Query 009782
Match_columns 526
No_of_seqs 566 out of 2797
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 12:53:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.5E-39 1.2E-43 328.9 36.9 427 89-523 82-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.7E-37 5.7E-42 316.5 32.6 439 55-504 83-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.8E-28 3E-32 230.9 39.3 371 68-508 11-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.3E-29 4.4E-34 247.7 22.0 212 176-438 7-222 (501)
5 4g26_A Pentatricopeptide repea 100.0 6.1E-30 2.1E-34 250.0 17.9 208 74-305 8-220 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 5.1E-27 1.8E-31 225.6 36.6 357 98-523 6-369 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.3E-23 1.1E-27 206.7 32.3 425 91-523 6-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.8E-22 6.1E-27 197.9 31.7 348 90-518 25-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 2E-22 6.8E-27 201.1 29.9 397 66-499 16-489 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 9.7E-22 3.3E-26 192.7 30.3 298 160-523 27-359 (450)
11 3fp2_A TPR repeat-containing p 99.9 3.7E-21 1.3E-25 193.1 31.4 419 91-523 25-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.8E-20 6E-25 188.1 26.4 422 65-497 34-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 4E-19 1.4E-23 168.2 32.4 339 90-507 2-354 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8E-19 2.7E-23 166.2 32.8 313 128-524 5-337 (359)
15 3hym_B Cell division cycle pro 99.8 3.3E-18 1.1E-22 159.9 30.6 287 160-510 23-322 (330)
16 2ooe_A Cleavage stimulation fa 99.8 2.5E-16 8.5E-21 157.4 39.7 406 90-521 12-491 (530)
17 3hym_B Cell division cycle pro 99.8 6.7E-18 2.3E-22 157.9 26.2 269 190-523 18-300 (330)
18 1fch_A Peroxisomal targeting s 99.8 2.6E-18 9E-23 163.4 23.2 295 139-519 38-356 (368)
19 2xm6_A Protein corresponding t 99.8 1.4E-15 4.7E-20 150.4 40.8 360 76-491 27-435 (490)
20 1b89_A Protein (clathrin heavy 99.8 2.3E-19 7.8E-24 167.2 11.9 282 138-515 15-304 (449)
21 4eqf_A PEX5-related protein; a 99.8 8E-18 2.7E-22 159.9 21.5 273 160-518 66-352 (365)
22 3mkr_A Coatomer subunit epsilo 99.8 3.4E-17 1.2E-21 149.4 23.7 269 204-515 9-287 (291)
23 2xm6_A Protein corresponding t 99.8 1.3E-15 4.6E-20 150.5 36.2 366 69-491 56-470 (490)
24 1b89_A Protein (clathrin heavy 99.8 8E-18 2.7E-22 156.8 17.7 221 68-355 15-235 (449)
25 3mkr_A Coatomer subunit epsilo 99.8 2E-16 6.9E-21 144.3 25.3 275 136-481 9-287 (291)
26 4g1t_A Interferon-induced prot 99.8 6.4E-16 2.2E-20 152.2 30.2 380 88-524 48-461 (472)
27 1xi4_A Clathrin heavy chain; a 99.8 4.1E-14 1.4E-18 147.1 43.2 377 90-514 984-1376(1630)
28 3cv0_A Peroxisome targeting si 99.7 1E-16 3.4E-21 149.6 21.1 273 160-519 22-312 (327)
29 2ooe_A Cleavage stimulation fa 99.7 7.2E-15 2.5E-19 146.8 35.2 398 58-491 15-495 (530)
30 1xi4_A Clathrin heavy chain; a 99.7 3E-14 1E-18 148.1 39.5 410 55-517 984-1440(1630)
31 4eqf_A PEX5-related protein; a 99.7 3.7E-16 1.3E-20 148.4 22.3 239 232-522 68-310 (365)
32 1fch_A Peroxisomal targeting s 99.7 8.7E-16 3E-20 145.9 23.5 282 66-352 35-355 (368)
33 3spa_A Mtrpol, DNA-directed RN 99.7 3.9E-18 1.3E-22 171.5 7.4 150 125-274 126-286 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.7 9.5E-18 3.2E-22 168.7 8.8 150 160-341 128-286 (1134)
35 3cv0_A Peroxisome targeting si 99.7 8E-15 2.7E-19 136.6 25.5 254 65-354 30-313 (327)
36 4g1t_A Interferon-induced prot 99.6 1.9E-14 6.4E-19 141.7 23.5 391 54-500 49-471 (472)
37 3uq3_A Heat shock protein STI1 99.6 1.7E-14 5.8E-19 129.4 20.7 109 391-501 140-255 (258)
38 3u4t_A TPR repeat-containing p 99.6 7E-14 2.4E-18 126.6 24.5 245 199-508 8-270 (272)
39 3e4b_A ALGK; tetratricopeptide 99.6 2.2E-13 7.4E-18 132.6 29.5 341 97-491 9-390 (452)
40 3uq3_A Heat shock protein STI1 99.6 2.3E-14 8E-19 128.5 19.5 61 161-223 7-67 (258)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.7E-14 1.6E-18 127.9 20.6 218 230-516 44-269 (275)
42 2pl2_A Hypothetical conserved 99.6 1.5E-14 5E-19 126.1 15.9 193 324-520 2-212 (217)
43 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.2E-13 1.4E-17 121.6 24.2 221 64-289 13-244 (275)
44 4a1s_A PINS, partner of inscut 99.6 5.8E-14 2E-18 135.5 18.1 209 261-521 127-371 (411)
45 3sf4_A G-protein-signaling mod 99.6 9.7E-14 3.3E-18 133.5 18.9 268 200-520 15-334 (406)
46 3ro2_A PINS homolog, G-protein 99.6 8.8E-14 3E-18 129.9 17.3 132 391-522 184-332 (338)
47 2pl2_A Hypothetical conserved 99.5 1.6E-13 5.6E-18 119.4 16.0 195 88-286 2-211 (217)
48 3u4t_A TPR repeat-containing p 99.5 2.4E-12 8.3E-17 116.3 24.1 161 128-289 5-171 (272)
49 3sf4_A G-protein-signaling mod 99.5 1E-13 3.5E-18 133.3 15.8 295 162-510 12-364 (406)
50 3vtx_A MAMA; tetratricopeptide 99.5 5E-13 1.7E-17 113.1 17.3 166 326-523 4-171 (184)
51 2q7f_A YRRB protein; TPR, prot 99.5 2.9E-13 1E-17 120.1 16.0 213 230-506 24-240 (243)
52 2ho1_A Type 4 fimbrial biogene 99.5 2.3E-12 8E-17 115.0 21.3 197 91-289 37-238 (252)
53 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-12 4.1E-17 116.9 19.3 195 327-523 37-239 (252)
54 1ouv_A Conserved hypothetical 99.5 6.4E-12 2.2E-16 113.7 24.0 127 390-523 110-252 (273)
55 2h6f_A Protein farnesyltransfe 99.5 1.7E-12 5.8E-17 122.4 19.9 131 389-522 199-348 (382)
56 2vq2_A PILW, putative fimbrial 99.5 2.4E-12 8.1E-17 112.6 19.7 195 327-523 8-212 (225)
57 2q7f_A YRRB protein; TPR, prot 99.5 4.6E-13 1.6E-17 118.8 15.2 195 326-523 22-223 (243)
58 3ulq_A Response regulator aspa 99.5 3.3E-12 1.1E-16 121.8 22.1 234 235-521 109-367 (383)
59 2vq2_A PILW, putative fimbrial 99.5 7.4E-12 2.5E-16 109.4 21.8 198 90-289 7-211 (225)
60 4a1s_A PINS, partner of inscut 99.5 1.4E-12 4.8E-17 125.7 18.4 274 165-491 54-375 (411)
61 3ro2_A PINS homolog, G-protein 99.5 1.9E-12 6.6E-17 120.7 18.7 275 164-491 10-335 (338)
62 3e4b_A ALGK; tetratricopeptide 99.5 1.1E-11 3.8E-16 120.6 23.7 342 163-524 7-389 (452)
63 2h6f_A Protein farnesyltransfe 99.5 8.3E-12 2.8E-16 117.7 21.6 127 160-288 98-228 (382)
64 4e6h_A MRNA 3'-END-processing 99.4 1.3E-09 4.5E-14 109.7 37.1 414 75-494 51-576 (679)
65 4abn_A Tetratricopeptide repea 99.4 1E-12 3.6E-17 128.6 14.2 190 326-519 101-318 (474)
66 1ouv_A Conserved hypothetical 99.4 4.9E-11 1.7E-15 107.9 23.9 191 90-290 5-216 (273)
67 3nf1_A KLC 1, kinesin light ch 99.4 1.1E-11 3.7E-16 114.4 18.8 236 261-521 28-306 (311)
68 4gyw_A UDP-N-acetylglucosamine 99.4 3.5E-12 1.2E-16 129.9 15.7 163 326-521 8-173 (723)
69 3as5_A MAMA; tetratricopeptide 99.4 3.7E-11 1.3E-15 101.3 19.4 163 328-521 9-172 (186)
70 4abn_A Tetratricopeptide repea 99.4 1.3E-11 4.5E-16 120.8 16.9 211 70-283 82-315 (474)
71 4e6h_A MRNA 3'-END-processing 99.4 2.8E-09 9.7E-14 107.3 33.5 413 107-522 48-570 (679)
72 3nf1_A KLC 1, kinesin light ch 99.4 4.5E-12 1.6E-16 116.9 12.3 257 160-491 28-310 (311)
73 2ond_A Cleavage stimulation fa 99.3 1.3E-10 4.3E-15 107.1 21.8 214 73-289 33-270 (308)
74 3ulq_A Response regulator aspa 99.3 6.5E-11 2.2E-15 112.8 20.3 235 202-489 111-369 (383)
75 1hz4_A MALT regulatory protein 99.3 1.1E-09 3.7E-14 103.9 28.3 206 263-520 96-320 (373)
76 3q15_A PSP28, response regulat 99.3 9.2E-11 3.2E-15 111.5 20.0 235 234-521 106-364 (378)
77 3vtx_A MAMA; tetratricopeptide 99.3 1.2E-10 4E-15 98.3 17.7 161 126-288 5-169 (184)
78 3q15_A PSP28, response regulat 99.3 5.1E-10 1.7E-14 106.4 22.8 232 204-488 111-365 (378)
79 3edt_B KLC 2, kinesin light ch 99.3 6.4E-11 2.2E-15 107.4 15.8 197 326-522 42-281 (283)
80 2ond_A Cleavage stimulation fa 99.3 5.1E-10 1.8E-14 103.0 21.5 164 327-493 99-275 (308)
81 4i17_A Hypothetical protein; T 99.3 2.2E-10 7.4E-15 100.5 17.6 168 326-523 6-210 (228)
82 1qqe_A Vesicular transport pro 99.2 4.2E-10 1.5E-14 102.6 18.4 214 244-520 32-267 (292)
83 4i17_A Hypothetical protein; T 99.2 6.1E-10 2.1E-14 97.5 18.4 101 393-503 120-224 (228)
84 3as5_A MAMA; tetratricopeptide 99.2 1.4E-09 4.7E-14 91.5 18.4 161 127-289 9-173 (186)
85 2fo7_A Synthetic consensus TPR 99.2 4.6E-10 1.6E-14 88.8 14.4 131 392-524 3-134 (136)
86 4gyw_A UDP-N-acetylglucosamine 99.2 2.7E-10 9.1E-15 116.1 14.8 134 387-523 5-141 (723)
87 1hz4_A MALT regulatory protein 99.2 1.3E-08 4.4E-13 96.4 25.8 258 68-353 26-319 (373)
88 3edt_B KLC 2, kinesin light ch 99.1 4.9E-10 1.7E-14 101.5 13.3 223 66-288 18-280 (283)
89 3gyz_A Chaperone protein IPGC; 99.1 4.5E-10 1.5E-14 90.6 11.3 102 421-522 30-133 (151)
90 4ga2_A E3 SUMO-protein ligase 99.1 4.2E-10 1.4E-14 91.2 9.4 116 391-508 32-149 (150)
91 4ga2_A E3 SUMO-protein ligase 99.1 1.4E-10 4.8E-15 94.0 6.4 124 396-522 3-129 (150)
92 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.3E-09 2.2E-13 90.8 17.5 134 391-524 42-215 (225)
93 3qky_A Outer membrane assembly 99.1 3.4E-09 1.1E-13 94.9 15.0 167 326-522 14-224 (261)
94 3mv2_B Coatomer subunit epsilo 99.0 3.1E-08 1.1E-12 88.6 20.3 162 326-494 99-288 (310)
95 4gco_A Protein STI-1; structur 99.0 2E-09 6.8E-14 84.1 11.3 115 386-502 8-124 (126)
96 4gco_A Protein STI-1; structur 99.0 1.8E-09 6.2E-14 84.3 10.9 102 422-523 8-111 (126)
97 2vsy_A XCC0866; transferase, g 99.0 3.1E-09 1E-13 106.9 15.5 148 371-523 5-158 (568)
98 1qqe_A Vesicular transport pro 99.0 3.4E-09 1.2E-13 96.6 14.3 133 390-522 77-228 (292)
99 2ifu_A Gamma-SNAP; membrane fu 99.0 3.6E-09 1.2E-13 97.3 14.3 232 207-514 4-253 (307)
100 2r5s_A Uncharacterized protein 99.0 2.4E-09 8.2E-14 89.5 11.8 159 330-521 9-172 (176)
101 3qky_A Outer membrane assembly 99.0 4.5E-09 1.5E-13 94.1 13.8 193 260-513 15-252 (261)
102 3qou_A Protein YBBN; thioredox 99.0 3.5E-09 1.2E-13 96.2 13.1 163 326-521 116-283 (287)
103 2vgx_A Chaperone SYCD; alterna 99.0 1.4E-09 4.9E-14 87.7 9.3 102 392-495 23-125 (148)
104 3rjv_A Putative SEL1 repeat pr 99.0 4.9E-08 1.7E-12 84.1 19.1 162 326-524 17-199 (212)
105 2pzi_A Probable serine/threoni 99.0 2.6E-09 9E-14 109.3 12.3 135 369-508 447-583 (681)
106 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.1E-08 3.8E-13 88.3 14.6 126 393-523 9-151 (213)
107 2pzi_A Probable serine/threoni 98.9 2.2E-09 7.5E-14 109.9 10.3 167 326-497 432-611 (681)
108 1a17_A Serine/threonine protei 98.9 1.7E-08 6E-13 83.0 13.5 128 391-520 14-144 (166)
109 3urz_A Uncharacterized protein 98.9 1.2E-08 4E-13 87.8 12.8 152 368-524 17-188 (208)
110 3u3w_A Transcriptional activat 98.9 1.2E-07 4.1E-12 86.4 19.2 129 393-521 118-265 (293)
111 3qou_A Protein YBBN; thioredox 98.9 5.8E-08 2E-12 88.1 16.9 177 72-254 102-280 (287)
112 1p5q_A FKBP52, FK506-binding p 98.9 9.2E-09 3.2E-13 95.6 11.2 129 390-521 147-293 (336)
113 2fo7_A Synthetic consensus TPR 98.9 6.8E-08 2.3E-12 76.0 14.8 128 94-223 4-132 (136)
114 2vyi_A SGTA protein; chaperone 98.9 2.7E-08 9.3E-13 78.0 11.8 120 389-510 11-131 (131)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 4.2E-08 1.4E-12 90.0 14.8 129 391-520 77-222 (307)
116 3mv2_B Coatomer subunit epsilo 98.9 1.4E-07 4.7E-12 84.4 17.2 139 111-254 86-236 (310)
117 3upv_A Heat shock protein STI1 98.8 1.8E-08 6.1E-13 78.7 10.4 109 392-502 6-121 (126)
118 2lni_A Stress-induced-phosphop 98.8 2.9E-08 1E-12 78.1 11.8 119 388-508 14-133 (133)
119 2r5s_A Uncharacterized protein 98.8 5.4E-08 1.8E-12 81.1 13.9 158 94-253 9-168 (176)
120 2xcb_A PCRH, regulatory protei 98.8 2.2E-08 7.4E-13 80.2 11.0 106 392-499 20-126 (142)
121 2e2e_A Formate-dependent nitri 98.8 9.3E-09 3.2E-13 85.9 8.9 123 369-494 24-150 (177)
122 1na0_A Designed protein CTPR3; 98.8 4.9E-08 1.7E-12 75.7 12.4 116 390-507 9-125 (125)
123 3gyz_A Chaperone protein IPGC; 98.8 7.8E-08 2.7E-12 77.4 13.2 106 386-493 31-138 (151)
124 1hxi_A PEX5, peroxisome target 98.8 1.7E-08 6E-13 78.1 8.8 96 428-523 19-115 (121)
125 2uy1_A Cleavage stimulation fa 98.8 3.9E-06 1.3E-10 81.9 27.0 123 391-520 287-411 (493)
126 3sz7_A HSC70 cochaperone (SGT) 98.8 4.2E-08 1.4E-12 80.7 10.7 110 389-500 10-120 (164)
127 4gcn_A Protein STI-1; structur 98.8 2.4E-08 8.3E-13 78.0 8.5 92 429-520 11-110 (127)
128 3q49_B STIP1 homology and U bo 98.8 7E-08 2.4E-12 76.5 11.4 101 389-491 8-109 (137)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.1E-07 2.4E-11 76.8 18.2 129 330-492 9-154 (213)
130 2fbn_A 70 kDa peptidylprolyl i 98.7 6.7E-08 2.3E-12 82.3 11.5 133 391-523 39-187 (198)
131 3urz_A Uncharacterized protein 98.7 1.6E-07 5.5E-12 80.6 13.7 131 163-297 58-192 (208)
132 2qfc_A PLCR protein; TPR, HTH, 98.7 9.1E-07 3.1E-11 80.5 19.1 128 393-520 118-264 (293)
133 2kck_A TPR repeat; tetratricop 98.7 6.4E-08 2.2E-12 73.4 9.6 100 425-524 5-108 (112)
134 3dra_A Protein farnesyltransfe 98.7 3.9E-06 1.3E-10 75.8 22.7 124 373-499 164-299 (306)
135 2lni_A Stress-induced-phosphop 98.7 1.2E-07 4.3E-12 74.4 11.6 99 424-522 14-113 (133)
136 2vsy_A XCC0866; transferase, g 98.7 1.4E-07 4.8E-12 94.8 14.6 142 327-500 23-169 (568)
137 2vgx_A Chaperone SYCD; alterna 98.7 8.8E-08 3E-12 77.1 10.7 108 412-522 9-118 (148)
138 2yhc_A BAMD, UPF0169 lipoprote 98.7 3.2E-07 1.1E-11 79.9 14.9 134 389-522 3-176 (225)
139 2hr2_A Hypothetical protein; a 98.7 8.7E-08 3E-12 76.2 9.7 91 430-520 15-129 (159)
140 1elw_A TPR1-domain of HOP; HOP 98.7 2.7E-07 9.4E-12 70.5 12.5 112 390-503 4-116 (118)
141 2dba_A Smooth muscle cell asso 98.7 2.6E-07 8.9E-12 74.1 12.8 113 389-504 27-144 (148)
142 1elw_A TPR1-domain of HOP; HOP 98.7 1.7E-07 5.7E-12 71.8 11.2 100 425-524 3-103 (118)
143 3upv_A Heat shock protein STI1 98.7 1.5E-07 5.3E-12 73.3 11.0 98 425-522 3-101 (126)
144 2xcb_A PCRH, regulatory protei 98.7 1.3E-07 4.3E-12 75.6 10.6 101 422-522 13-115 (142)
145 3u3w_A Transcriptional activat 98.7 2.2E-06 7.4E-11 77.9 19.6 201 79-288 34-265 (293)
146 1na0_A Designed protein CTPR3; 98.7 1.9E-07 6.4E-12 72.3 10.7 98 426-523 9-107 (125)
147 3rjv_A Putative SEL1 repeat pr 98.6 6.6E-07 2.3E-11 77.0 14.7 173 110-290 5-198 (212)
148 3sz7_A HSC70 cochaperone (SGT) 98.6 2.9E-07 9.8E-12 75.6 11.8 98 425-522 10-108 (164)
149 2uy1_A Cleavage stimulation fa 98.6 2E-05 6.7E-10 77.0 26.5 335 105-487 28-412 (493)
150 2dba_A Smooth muscle cell asso 98.6 5.6E-07 1.9E-11 72.1 13.1 100 424-523 26-129 (148)
151 2qfc_A PLCR protein; TPR, HTH, 98.6 8.4E-07 2.9E-11 80.7 15.3 175 262-488 77-266 (293)
152 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 3.8E-07 1.3E-11 88.6 13.6 132 390-521 268-414 (457)
153 2vyi_A SGTA protein; chaperone 98.6 3.3E-07 1.1E-11 71.6 10.6 99 425-523 11-110 (131)
154 3gw4_A Uncharacterized protein 98.6 9.1E-07 3.1E-11 75.3 14.2 133 389-521 25-175 (203)
155 2xev_A YBGF; tetratricopeptide 98.6 2.7E-07 9.1E-12 72.2 10.0 107 394-502 6-119 (129)
156 3rkv_A Putative peptidylprolyl 98.6 2.7E-07 9.3E-12 75.6 9.9 120 390-509 11-148 (162)
157 3q49_B STIP1 homology and U bo 98.6 3.7E-07 1.3E-11 72.2 10.4 98 424-521 7-105 (137)
158 3dra_A Protein farnesyltransfe 98.6 1.5E-05 5.2E-10 71.9 21.9 212 73-288 50-286 (306)
159 2e2e_A Formate-dependent nitri 98.6 5.3E-07 1.8E-11 75.1 11.7 123 400-524 20-146 (177)
160 3k9i_A BH0479 protein; putativ 98.6 9.4E-08 3.2E-12 73.4 6.3 92 403-495 3-97 (117)
161 1wao_1 Serine/threonine protei 98.5 2E-07 6.7E-12 91.0 9.0 120 396-517 12-134 (477)
162 2c2l_A CHIP, carboxy terminus 98.5 7E-07 2.4E-11 80.6 11.6 113 389-503 3-116 (281)
163 1a17_A Serine/threonine protei 98.5 8E-07 2.7E-11 72.9 10.8 98 426-523 13-111 (166)
164 1elr_A TPR2A-domain of HOP; HO 98.5 6.4E-07 2.2E-11 69.9 9.6 113 391-506 5-125 (131)
165 1elr_A TPR2A-domain of HOP; HO 98.5 4.7E-07 1.6E-11 70.7 8.7 98 426-523 4-109 (131)
166 1ihg_A Cyclophilin 40; ppiase 98.5 9.3E-07 3.2E-11 83.0 12.1 125 391-515 224-363 (370)
167 1hxi_A PEX5, peroxisome target 98.5 6.2E-07 2.1E-11 69.2 9.1 100 392-493 19-119 (121)
168 4gcn_A Protein STI-1; structur 98.5 1.1E-06 3.6E-11 68.6 10.5 99 391-491 9-115 (127)
169 3ro3_A PINS homolog, G-protein 98.5 8.1E-07 2.8E-11 72.3 10.1 131 391-521 10-157 (164)
170 2kck_A TPR repeat; tetratricop 98.5 1.3E-06 4.6E-11 65.9 10.4 102 390-493 6-111 (112)
171 2if4_A ATFKBP42; FKBP-like, al 98.4 3.4E-07 1.2E-11 85.1 8.1 129 392-523 181-329 (338)
172 2xev_A YBGF; tetratricopeptide 98.4 3.1E-06 1.1E-10 65.9 12.5 95 429-523 5-106 (129)
173 1p5q_A FKBP52, FK506-binding p 98.4 8.5E-07 2.9E-11 82.3 10.5 117 404-523 127-260 (336)
174 3rkv_A Putative peptidylprolyl 98.4 6.5E-07 2.2E-11 73.3 8.1 95 428-522 13-126 (162)
175 2fbn_A 70 kDa peptidylprolyl i 98.4 2.6E-06 8.8E-11 72.3 11.4 121 401-523 15-152 (198)
176 3n71_A Histone lysine methyltr 98.4 5.5E-06 1.9E-10 80.2 14.8 125 398-522 317-464 (490)
177 2hr2_A Hypothetical protein; a 98.4 8E-07 2.7E-11 70.7 7.2 108 391-501 12-144 (159)
178 3k9i_A BH0479 protein; putativ 98.4 2.4E-07 8.1E-12 71.1 4.1 85 438-522 2-90 (117)
179 3gw4_A Uncharacterized protein 98.4 1.6E-06 5.3E-11 73.9 9.3 57 232-288 110-175 (203)
180 2l6j_A TPR repeat-containing p 98.3 1.6E-07 5.4E-12 71.2 2.7 94 425-518 3-103 (111)
181 4f3v_A ESX-1 secretion system 98.3 6.4E-06 2.2E-10 72.7 12.8 124 395-522 107-237 (282)
182 4f3v_A ESX-1 secretion system 98.3 6E-06 2E-10 72.9 12.5 186 69-256 19-235 (282)
183 2c2l_A CHIP, carboxy terminus 98.3 2.6E-06 8.7E-11 76.9 10.3 145 368-522 17-164 (281)
184 3q7a_A Farnesyltransferase alp 98.3 3.2E-05 1.1E-09 70.7 17.1 218 271-521 65-330 (349)
185 2kat_A Uncharacterized protein 98.3 2.5E-06 8.4E-11 65.1 8.3 96 408-505 3-101 (115)
186 3q7a_A Farnesyltransferase alp 98.3 0.00024 8.2E-09 64.9 22.3 214 72-289 70-331 (349)
187 1na3_A Designed protein CTPR2; 98.2 4.4E-06 1.5E-10 60.3 8.4 83 425-507 8-91 (91)
188 1zu2_A Mitochondrial import re 98.2 8.3E-07 2.8E-11 70.4 4.5 87 437-523 13-121 (158)
189 3dss_A Geranylgeranyl transfer 98.2 9.6E-05 3.3E-09 67.2 18.2 217 271-521 40-303 (331)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 4.6E-06 1.6E-10 80.9 10.2 117 404-523 248-381 (457)
191 1ihg_A Cyclophilin 40; ppiase 98.2 6E-06 2.1E-10 77.5 10.5 97 427-523 224-337 (370)
192 2if4_A ATFKBP42; FKBP-like, al 98.2 3.2E-06 1.1E-10 78.4 8.3 97 426-522 179-293 (338)
193 3dss_A Geranylgeranyl transfer 98.1 6.2E-05 2.1E-09 68.4 15.0 182 338-522 40-267 (331)
194 3ma5_A Tetratricopeptide repea 98.1 1.3E-05 4.5E-10 59.2 8.7 65 425-489 6-71 (100)
195 4b4t_Q 26S proteasome regulato 98.1 0.00023 7.8E-09 68.5 19.0 26 263-288 58-83 (434)
196 1wao_1 Serine/threonine protei 98.0 1.1E-05 3.7E-10 78.7 8.9 95 429-523 9-104 (477)
197 1dce_A Protein (RAB geranylger 98.0 7.5E-05 2.5E-09 74.2 14.9 138 371-511 89-244 (567)
198 1zu2_A Mitochondrial import re 98.0 6.3E-06 2.2E-10 65.4 4.9 92 401-494 13-126 (158)
199 4b4t_Q 26S proteasome regulato 98.0 0.00015 5.1E-09 69.8 15.4 128 393-520 58-202 (434)
200 2kat_A Uncharacterized protein 98.0 2.9E-05 1E-09 58.9 8.2 77 444-520 3-80 (115)
201 1klx_A Cysteine rich protein B 97.9 0.00022 7.5E-09 56.1 12.8 112 404-524 9-128 (138)
202 3ro3_A PINS homolog, G-protein 97.9 4.3E-05 1.5E-09 61.8 9.0 58 231-288 91-157 (164)
203 1dce_A Protein (RAB geranylger 97.9 0.00023 7.9E-09 70.6 15.0 148 372-523 46-222 (567)
204 2l6j_A TPR repeat-containing p 97.8 6.5E-05 2.2E-09 56.3 8.5 66 458-523 3-68 (111)
205 3n71_A Histone lysine methyltr 97.8 8.7E-05 3E-09 71.9 10.8 88 434-521 317-421 (490)
206 3bee_A Putative YFRE protein; 97.8 0.00015 5.3E-09 52.2 9.0 67 425-491 5-75 (93)
207 3qww_A SET and MYND domain-con 97.8 9E-05 3.1E-09 70.5 9.9 61 460-520 341-409 (433)
208 3ma5_A Tetratricopeptide repea 97.7 4.8E-05 1.6E-09 56.1 6.0 62 459-520 7-68 (100)
209 1na3_A Designed protein CTPR2; 97.7 0.00016 5.5E-09 51.8 8.1 65 459-523 9-73 (91)
210 3qwp_A SET and MYND domain-con 97.6 0.00024 8.1E-09 67.8 10.6 60 460-519 330-397 (429)
211 2kc7_A BFR218_protein; tetratr 97.6 0.00028 9.6E-09 51.6 8.3 65 432-496 6-72 (99)
212 3qww_A SET and MYND domain-con 97.5 0.00072 2.5E-08 64.3 12.0 94 402-495 310-423 (433)
213 1qsa_A Protein (soluble lytic 97.5 0.067 2.3E-06 53.1 26.1 266 233-521 76-347 (618)
214 1wy6_A Hypothetical protein ST 97.5 0.0083 2.8E-07 45.1 14.5 84 439-525 74-157 (172)
215 2kc7_A BFR218_protein; tetratr 97.5 0.00036 1.2E-08 51.0 7.2 59 465-523 6-65 (99)
216 3qwp_A SET and MYND domain-con 97.4 0.0016 5.4E-08 62.1 13.2 100 397-496 294-413 (429)
217 3bee_A Putative YFRE protein; 97.4 0.0012 4.3E-08 47.4 9.3 67 458-524 5-74 (93)
218 3ly7_A Transcriptional activat 97.3 0.0031 1E-07 57.6 12.8 71 423-493 274-344 (372)
219 1klx_A Cysteine rich protein B 97.2 0.008 2.7E-07 47.0 13.2 114 67-189 6-127 (138)
220 3u64_A Protein TP_0956; tetrat 97.2 0.001 3.4E-08 58.1 8.3 105 406-519 179-295 (301)
221 1pc2_A Mitochondria fission pr 97.2 0.0019 6.6E-08 50.5 8.9 91 405-497 13-109 (152)
222 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0035 1.2E-07 46.2 9.2 76 425-500 4-87 (104)
223 3ly7_A Transcriptional activat 97.0 0.01 3.4E-07 54.2 13.3 134 87-223 190-339 (372)
224 1nzn_A CGI-135 protein, fissio 96.7 0.021 7.3E-07 42.9 10.7 96 400-497 11-112 (126)
225 1pc2_A Mitochondria fission pr 96.6 0.0045 1.5E-07 48.4 6.7 82 442-523 14-101 (152)
226 3mkq_A Coatomer beta'-subunit; 96.6 0.074 2.5E-06 55.5 18.3 22 333-354 742-763 (814)
227 3mkq_A Coatomer beta'-subunit; 96.4 0.12 4.2E-06 53.9 18.2 131 95-256 633-763 (814)
228 3lvg_A Clathrin heavy chain 1; 96.4 1.3E-06 4.5E-11 80.8 -17.1 262 160-514 55-325 (624)
229 3u64_A Protein TP_0956; tetrat 96.3 0.012 4.1E-07 51.5 7.7 82 372-458 180-272 (301)
230 3mkq_B Coatomer subunit alpha; 96.1 0.37 1.3E-05 38.7 15.2 130 133-286 12-141 (177)
231 2v5f_A Prolyl 4-hydroxylase su 96.1 0.026 8.8E-07 41.4 8.1 65 458-522 4-75 (104)
232 3lvg_A Clathrin heavy chain 1; 95.7 0.0024 8.3E-08 59.6 1.0 211 56-282 83-326 (624)
233 4gns_B Protein CSD3, chitin bi 95.7 0.057 1.9E-06 54.6 10.6 123 394-519 252-397 (754)
234 3mkq_B Coatomer subunit alpha; 95.7 0.41 1.4E-05 38.5 13.5 131 98-256 12-142 (177)
235 4b4t_P 26S proteasome regulato 95.6 1.5 5.2E-05 41.7 19.9 263 69-356 29-324 (445)
236 4h7y_A Dual specificity protei 95.3 0.078 2.7E-06 40.9 7.8 113 389-503 12-138 (161)
237 4h7y_A Dual specificity protei 95.3 0.21 7.1E-06 38.6 10.0 97 368-467 26-136 (161)
238 1nzn_A CGI-135 protein, fissio 94.3 0.18 6.1E-06 37.9 7.3 84 440-523 15-104 (126)
239 2ff4_A Probable regulatory pro 94.2 0.14 4.8E-06 47.9 8.3 60 462-521 174-233 (388)
240 3o48_A Mitochondria fission 1 94.0 0.34 1.2E-05 36.5 8.3 71 424-494 38-113 (134)
241 1y8m_A FIS1; mitochondria, unk 93.7 0.72 2.5E-05 35.3 9.7 73 423-495 36-113 (144)
242 1wy6_A Hypothetical protein ST 93.7 1.7 5.9E-05 32.8 13.5 129 93-225 7-156 (172)
243 1y8m_A FIS1; mitochondria, unk 93.4 0.75 2.6E-05 35.2 9.4 81 443-523 23-107 (144)
244 1v54_E Cytochrome C oxidase po 93.1 0.59 2E-05 33.1 7.7 62 72-134 26-87 (109)
245 3o48_A Mitochondria fission 1 92.4 0.65 2.2E-05 35.0 7.7 81 443-523 24-108 (134)
246 2uwj_G Type III export protein 91.6 2.1 7E-05 30.2 8.8 84 307-393 21-105 (115)
247 2p58_C Putative type III secre 91.4 2.2 7.5E-05 30.1 8.8 77 307-385 22-99 (116)
248 4gns_B Protein CSD3, chitin bi 91.3 3.1 0.00011 42.2 13.7 126 130-256 252-398 (754)
249 2qx5_A Nucleoporin NIC96; mRNA 90.6 8.2 0.00028 38.5 15.8 81 265-353 299-382 (661)
250 3ffl_A Anaphase-promoting comp 90.5 2.3 7.9E-05 33.6 9.4 26 494-519 123-148 (167)
251 3lpz_A GET4 (YOR164C homolog); 90.3 9.8 0.00034 34.1 21.9 169 328-520 36-214 (336)
252 2uwj_G Type III export protein 90.0 3.7 0.00013 28.9 9.4 88 208-300 20-107 (115)
253 2y69_E Cytochrome C oxidase su 90.0 1.7 5.8E-05 32.7 7.7 59 74-133 71-129 (152)
254 3lpz_A GET4 (YOR164C homolog); 89.8 11 0.00037 33.9 22.5 165 230-418 36-215 (336)
255 2p58_C Putative type III secre 89.8 3.9 0.00013 28.8 9.8 88 208-300 21-108 (116)
256 1v54_E Cytochrome C oxidase po 89.4 1.8 6.1E-05 30.7 7.1 61 373-435 28-88 (109)
257 3esl_A Checkpoint serine/threo 89.0 3.6 0.00012 33.7 9.8 54 473-526 93-148 (202)
258 1zbp_A Hypothetical protein VP 88.3 2.7 9.4E-05 36.2 9.1 111 399-521 6-128 (273)
259 1wdy_A 2-5A-dependent ribonucl 88.3 5 0.00017 34.9 11.6 51 97-151 8-61 (285)
260 4fhn_B Nucleoporin NUP120; pro 88.2 14 0.00046 40.1 16.8 54 94-152 815-868 (1139)
261 2ff4_A Probable regulatory pro 87.8 2 6.9E-05 40.0 8.9 69 392-462 173-248 (388)
262 1zbp_A Hypothetical protein VP 86.0 1.8 6.3E-05 37.2 6.7 61 434-494 5-66 (273)
263 4fhn_B Nucleoporin NUP120; pro 85.1 8.6 0.00029 41.7 13.2 122 395-522 817-967 (1139)
264 4a1g_A Mitotic checkpoint seri 84.3 7.7 0.00026 30.1 8.9 49 478-526 84-134 (152)
265 2y69_E Cytochrome C oxidase su 84.1 5.2 0.00018 30.1 7.4 61 373-435 71-131 (152)
266 1k1a_A B-cell lymphoma 3-encod 82.1 18 0.0006 30.4 11.8 53 98-150 13-67 (241)
267 2wpv_A GET4, UPF0363 protein Y 81.9 27 0.00094 31.0 21.4 168 329-520 35-215 (312)
268 2wvi_A Mitotic checkpoint seri 80.7 11 0.00039 29.6 8.8 29 460-488 97-125 (164)
269 4b4t_P 26S proteasome regulato 80.1 41 0.0014 31.8 22.9 182 105-288 30-246 (445)
270 3eu9_A Huntingtin-interacting 77.8 9.9 0.00034 31.9 8.7 19 236-254 181-199 (240)
271 2wpv_A GET4, UPF0363 protein Y 76.7 40 0.0014 29.9 21.4 187 210-419 13-217 (312)
272 1wdy_A 2-5A-dependent ribonucl 76.2 29 0.00098 29.9 11.6 18 334-351 223-240 (285)
273 1n11_A Ankyrin; clathrin, BAND 75.2 25 0.00087 32.9 11.6 173 333-521 215-401 (437)
274 3ffl_A Anaphase-promoting comp 75.0 5.7 0.0002 31.3 5.5 60 461-520 22-90 (167)
275 4b4t_R RPN7, 26S proteasome re 74.3 20 0.00067 33.8 10.3 57 392-449 133-191 (429)
276 3txn_A 26S proteasome regulato 73.8 56 0.0019 30.2 17.6 157 330-487 22-209 (394)
277 4b4t_R RPN7, 26S proteasome re 71.5 19 0.00065 33.9 9.5 94 160-255 132-234 (429)
278 3ltj_A Alpharep-4; protein eng 71.3 39 0.0013 27.3 16.0 59 228-287 120-178 (201)
279 3ltm_A Alpha-REP4; protein eng 70.5 42 0.0015 27.4 14.2 80 89-174 31-110 (211)
280 3esl_A Checkpoint serine/threo 69.5 45 0.0015 27.3 9.8 67 162-229 83-150 (202)
281 3b7b_A Euchromatic histone-lys 69.5 23 0.0008 29.6 9.0 19 133-151 81-99 (237)
282 4ady_A RPN2, 26S proteasome re 68.6 1.2E+02 0.0041 31.8 31.7 247 236-487 381-657 (963)
283 4a1g_A Mitotic checkpoint seri 66.9 33 0.0011 26.6 8.1 52 372-424 82-134 (152)
284 4aez_C MAD3, mitotic spindle c 65.4 15 0.00052 30.6 6.4 48 478-525 133-182 (223)
285 3bqo_A Telomeric repeat-bindin 64.9 37 0.0013 27.5 8.1 41 467-507 125-165 (211)
286 3kea_A K1L; tropism, ANK repea 63.2 26 0.00087 30.6 8.1 143 98-253 35-182 (285)
287 3ljn_A Hypothetical protein; a 62.7 20 0.00068 32.6 7.6 19 334-352 177-195 (364)
288 1bd8_A P19INK4D CDK4/6 inhibit 62.2 21 0.00073 27.3 6.8 16 239-254 108-123 (156)
289 3kea_A K1L; tropism, ANK repea 62.1 74 0.0025 27.5 11.0 172 77-258 45-221 (285)
290 2zu6_B Programmed cell death p 61.4 87 0.003 27.7 11.2 54 330-383 6-66 (307)
291 3ltm_A Alpha-REP4; protein eng 60.7 67 0.0023 26.1 16.2 155 123-288 30-184 (211)
292 3bu8_A Telomeric repeat-bindin 60.6 57 0.0019 26.8 8.5 40 432-471 120-159 (235)
293 3txn_A 26S proteasome regulato 60.5 1.1E+02 0.0036 28.4 22.5 33 489-523 312-344 (394)
294 3ltj_A Alpharep-4; protein eng 60.4 65 0.0022 25.9 15.4 144 89-246 26-169 (201)
295 2wvi_A Mitotic checkpoint seri 59.6 33 0.0011 27.0 7.0 52 373-425 78-130 (164)
296 2d2s_A Exocyst complex compone 58.2 47 0.0016 28.0 8.4 87 165-254 24-116 (235)
297 4aez_C MAD3, mitotic spindle c 57.5 57 0.0019 27.2 8.4 52 372-424 131-183 (223)
298 1k1a_A B-cell lymphoma 3-encod 57.3 54 0.0019 27.2 9.0 139 67-214 17-167 (241)
299 4gq2_M Nucleoporin NUP120; bet 56.6 83 0.0028 33.2 11.7 106 396-507 816-950 (950)
300 3hra_A Ankyrin repeat family p 55.8 39 0.0013 27.2 7.6 16 135-150 78-93 (201)
301 3aji_A 26S proteasome non-ATPa 52.8 95 0.0032 25.5 12.7 147 98-254 10-161 (231)
302 2d2s_A Exocyst complex compone 52.2 63 0.0022 27.3 8.2 89 97-186 24-118 (235)
303 3hra_A Ankyrin repeat family p 52.0 89 0.003 24.9 9.6 58 237-294 111-172 (201)
304 1ya0_A SMG-7 transcript varian 51.4 57 0.0019 31.3 8.7 76 394-471 156-232 (497)
305 3kae_A CDC27, possible protein 50.6 92 0.0032 24.7 11.1 42 483-525 197-240 (242)
306 3jxi_A Vanilloid receptor-rela 49.9 25 0.00087 29.9 5.7 50 68-117 14-72 (260)
307 3eu9_A Huntingtin-interacting 49.4 1E+02 0.0034 25.3 9.5 20 132-151 45-64 (240)
308 3jxi_A Vanilloid receptor-rela 48.8 28 0.00095 29.7 5.8 53 168-220 11-72 (260)
309 3aji_A 26S proteasome non-ATPa 48.3 1.1E+02 0.0038 25.0 9.8 174 66-254 13-194 (231)
310 1ya0_A SMG-7 transcript varian 47.1 70 0.0024 30.7 8.5 77 429-505 155-232 (497)
311 4ady_A RPN2, 26S proteasome re 45.2 2.9E+02 0.01 28.9 32.4 25 232-256 233-257 (963)
312 2xig_A Ferric uptake regulatio 44.3 92 0.0032 23.9 7.5 65 78-143 14-78 (150)
313 2fu4_A Ferric uptake regulatio 44.3 68 0.0023 21.4 6.3 62 80-142 6-68 (83)
314 3bu8_A Telomeric repeat-bindin 43.8 1.4E+02 0.0047 24.7 11.1 89 68-157 31-145 (235)
315 1n11_A Ankyrin; clathrin, BAND 42.2 1E+02 0.0035 28.7 9.1 70 78-151 29-102 (437)
316 2fe3_A Peroxide operon regulat 42.1 82 0.0028 24.0 6.9 62 80-142 11-72 (145)
317 3bqo_A Telomeric repeat-bindin 41.6 1.4E+02 0.0048 24.2 8.6 46 142-187 94-145 (211)
318 4g8k_A 2-5A-dependent ribonucl 41.2 1.9E+02 0.0064 25.5 13.5 209 130-352 26-261 (337)
319 2nsz_A Programmed cell death p 40.3 86 0.0029 23.4 6.5 26 428-454 9-34 (129)
320 2ion_A PDCD4, programmed cell 40.2 43 0.0015 26.0 4.9 62 129-190 12-76 (152)
321 3ygs_P Procaspase 9; apoptosis 39.3 42 0.0014 23.6 4.4 38 140-179 51-88 (97)
322 3e3v_A Regulatory protein RECX 39.3 1.4E+02 0.0049 23.7 9.7 31 427-458 137-168 (177)
323 2qx5_A Nucleoporin NIC96; mRNA 38.7 3.1E+02 0.011 27.4 18.6 80 332-416 299-382 (661)
324 3ljn_A Hypothetical protein; a 38.3 1.7E+02 0.0058 26.2 9.7 25 201-225 88-112 (364)
325 3vu7_H DNA repair protein REV1 37.0 90 0.0031 23.2 5.9 48 72-119 38-88 (124)
326 2rfa_A Transient receptor pote 36.5 1.7E+02 0.006 23.8 9.9 25 201-225 158-182 (232)
327 4b4t_S RPN3, 26S proteasome re 36.2 1.3E+02 0.0045 28.8 8.4 65 390-458 231-302 (523)
328 2f8y_A Notch homolog 1, transl 34.3 1.8E+02 0.0063 23.4 9.1 53 201-257 129-183 (223)
329 3b7b_A Euchromatic histone-lys 33.7 1.9E+02 0.0064 23.7 8.6 147 98-257 15-169 (237)
330 1wty_A Hypothetical protein TT 33.5 71 0.0024 23.4 5.0 89 71-165 3-92 (119)
331 2ion_A PDCD4, programmed cell 33.0 1.7E+02 0.0058 22.6 10.3 65 232-296 12-81 (152)
332 1mzb_A Ferric uptake regulatio 32.9 1E+02 0.0034 23.2 6.0 62 81-143 8-70 (136)
333 2w57_A Ferric uptake regulatio 32.8 1E+02 0.0035 23.7 6.1 64 79-143 5-69 (150)
334 4gq2_M Nucleoporin NUP120; bet 32.4 3.8E+02 0.013 28.2 12.1 130 97-243 816-950 (950)
335 1bd8_A P19INK4D CDK4/6 inhibit 32.4 50 0.0017 25.1 4.3 146 98-254 6-155 (156)
336 2rfa_A Transient receptor pote 32.3 2E+02 0.007 23.4 11.3 54 237-291 126-182 (232)
337 1oyz_A Hypothetical protein YI 32.1 2.4E+02 0.0081 24.0 21.7 63 424-491 204-266 (280)
338 4ets_A Ferric uptake regulatio 32.1 1.4E+02 0.005 23.2 6.9 69 73-142 14-85 (162)
339 2pnn_A Transient receptor pote 31.7 97 0.0033 26.4 6.6 17 335-351 238-254 (273)
340 3ygs_P Procaspase 9; apoptosis 31.7 65 0.0022 22.6 4.3 38 243-280 51-88 (97)
341 3mv2_A Coatomer subunit alpha; 31.6 2.8E+02 0.0094 24.6 13.2 40 452-491 198-239 (325)
342 3eyy_A Putative iron uptake re 30.9 90 0.0031 23.8 5.4 62 79-142 7-68 (145)
343 2r9g_A AAA ATPase, central reg 30.3 2.2E+02 0.0076 23.1 8.1 63 162-225 14-84 (204)
344 2fu4_A Ferric uptake regulatio 30.0 1.2E+02 0.0042 20.0 6.5 60 184-244 7-67 (83)
345 2etb_A Transient receptor pote 29.6 62 0.0021 27.3 4.8 28 98-125 6-33 (256)
346 2p1h_A APAF-1, apoptotic prote 29.5 1.2E+02 0.0041 20.9 5.5 35 139-175 49-83 (94)
347 3utm_A Tankyrase-1; tankyrase, 29.5 2.9E+02 0.0098 24.2 13.8 248 130-389 25-307 (351)
348 3twr_A Tankyrase-2; ankyrin re 29.1 1.6E+02 0.0053 22.4 6.9 16 239-254 115-130 (165)
349 2xig_A Ferric uptake regulatio 28.8 1.7E+02 0.0059 22.4 6.8 61 183-244 16-76 (150)
350 1mzb_A Ferric uptake regulatio 28.3 1.7E+02 0.0058 21.9 6.6 60 184-244 8-68 (136)
351 2r9g_A AAA ATPase, central reg 28.2 2.4E+02 0.0083 22.9 10.7 62 262-324 13-85 (204)
352 4b4t_S RPN3, 26S proteasome re 28.0 1.3E+02 0.0043 29.0 6.8 22 499-520 276-297 (523)
353 2w57_A Ferric uptake regulatio 27.7 1.8E+02 0.006 22.3 6.7 62 183-245 6-68 (150)
354 2fe3_A Peroxide operon regulat 27.7 1.7E+02 0.006 22.1 6.6 61 183-244 11-71 (145)
355 2nsz_A Programmed cell death p 27.4 1.9E+02 0.0065 21.5 11.7 65 232-296 10-79 (129)
356 3eiq_C Programmed cell death p 27.3 3.5E+02 0.012 24.5 15.4 196 328-524 55-284 (358)
357 1jog_A Hypothetical protein HI 27.3 1.4E+02 0.0049 22.8 5.9 95 68-164 7-115 (146)
358 4ets_A Ferric uptake regulatio 27.1 2.2E+02 0.0076 22.1 7.7 69 176-245 14-85 (162)
359 3v30_A DNA-binding protein rfx 26.5 1.9E+02 0.0066 22.1 7.0 15 136-150 76-90 (172)
360 2y1l_E Darpin-8.4; hydrolase-i 26.2 2.2E+02 0.0075 21.8 8.0 15 136-150 54-68 (169)
361 2dzn_A Probable 26S proteasome 26.2 2.6E+02 0.0088 22.6 8.4 53 99-152 7-59 (228)
362 2b7e_A PRE-mRNA processing pro 25.9 74 0.0025 19.9 3.2 30 175-204 2-31 (59)
363 2p1h_A APAF-1, apoptotic prote 25.4 1.7E+02 0.0057 20.1 6.8 38 242-279 49-86 (94)
364 3bge_A Predicted ATPase; struc 24.8 2.8E+02 0.0096 22.5 8.8 43 263-305 7-52 (201)
365 3bge_A Predicted ATPase; struc 24.7 2.5E+02 0.0086 22.8 6.9 45 164-208 9-56 (201)
366 2crb_A Nuclear receptor bindin 24.7 99 0.0034 21.4 3.9 22 463-484 19-40 (97)
367 2xai_A ASB-9, ankyrin repeat a 24.4 3.1E+02 0.011 22.9 10.5 14 137-150 44-57 (261)
368 2ijq_A Hypothetical protein; s 24.4 1.4E+02 0.0049 23.3 5.4 52 68-119 44-103 (161)
369 3ctd_A Putative ATPase, AAA fa 24.0 2.9E+02 0.0098 22.7 7.2 90 165-255 38-135 (213)
370 1wty_A Hypothetical protein TT 24.0 2.1E+02 0.0072 20.8 7.0 75 405-487 3-80 (119)
371 2etb_A Transient receptor pote 23.4 2.1E+02 0.0071 23.8 7.1 90 165-256 5-114 (256)
372 2pnn_A Transient receptor pote 23.3 1.6E+02 0.0055 24.9 6.4 83 68-151 22-123 (273)
373 1ug3_A EIF4GI, eukaryotic prot 22.6 2.7E+02 0.0094 24.9 7.9 148 95-254 15-166 (339)
374 2ijq_A Hypothetical protein; s 22.6 2.8E+02 0.0095 21.7 8.2 51 470-520 43-102 (161)
375 3d9h_A CDNA FLJ77766, highly s 22.2 3.7E+02 0.013 22.9 9.8 167 76-253 72-243 (285)
376 2qq8_A TBC1 domain family memb 21.6 1.4E+02 0.0047 26.8 5.7 109 72-184 170-291 (334)
377 2f8y_A Notch homolog 1, transl 21.6 3.1E+02 0.011 21.9 10.1 16 239-254 132-147 (223)
378 2xai_A ASB-9, ankyrin repeat a 21.5 3.6E+02 0.012 22.5 10.7 163 78-254 18-188 (261)
379 3hzj_A Rabgap1L, RAB GTPase-ac 21.5 4.1E+02 0.014 23.2 8.9 111 72-187 131-256 (310)
380 4b93_B Ankyrin repeat domain-c 21.3 3.2E+02 0.011 23.2 7.8 14 240-253 160-173 (269)
381 2qfz_A TBC1 domain family memb 21.2 2.4E+02 0.0083 25.2 7.3 110 72-185 188-312 (345)
382 2o03_A Probable zinc uptake re 21.1 1.3E+02 0.0044 22.4 4.6 24 166-189 17-40 (131)
383 2yru_A Steroid receptor RNA ac 20.6 1.9E+02 0.0063 21.2 5.0 42 78-119 48-89 (118)
384 3v31_A Ankyrin repeat family A 20.2 2.8E+02 0.0097 20.9 7.1 143 76-222 16-160 (167)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-39 Score=328.92 Aligned_cols=427 Identities=9% Similarity=-0.021 Sum_probs=349.2
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHH
Q 009782 89 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168 (526)
Q Consensus 89 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 168 (526)
++...|+.++..+.+.|++++|.++|+.+.+. .|+..++..++.+|.+.|++++|..+|+.+....+++.+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 46777788888888888888888888877753 4566777778888888888888888888775544555777888888
Q ss_pred HHhcCChHHHHHHHHHHHHc---------------CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh---
Q 009782 169 YAELGEYEDAIALYFQMEEE---------------GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF--- 230 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--- 230 (526)
|.+.|++++|+++|+++... |.+++..+|+.++.+|.+.|++++|.++|+++.+.+. .+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHH
Confidence 88888888888888742211 1233456778888888888888888888888776542 1222
Q ss_pred -----------------------------------HHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcccHHHHHHHHHhC
Q 009782 231 -----------------------------------VLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHH 273 (526)
Q Consensus 231 -----------------------------------~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 273 (526)
+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 233446667788999999999999988 7899999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHh
Q 009782 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350 (526)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 350 (526)
|++++|.++|+++.+.+. .+..++..++..+ |+.++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999997652 2444555555554 99999999999998654 457889999999999999999999999
Q ss_pred ccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 009782 351 DHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424 (526)
Q Consensus 351 ~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 424 (526)
+++.+ .+..+|+.++.. .|+.++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+. .+.
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 473 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQY 473 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 98763 457788888877 588999999999999853 336789999999999999999999999999875 345
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcC------CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKME------FEAS--PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
+..+|..++..|.+.|++++|.++|.+++. ..|+ ..+|..++.+|.+.|++++|++.++++++..|+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 789999999999999999999999966654 3777 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 497 ELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 497 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..++.+|.+.|++++|.+.++++.+..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-37 Score=316.49 Aligned_cols=439 Identities=10% Similarity=-0.028 Sum_probs=376.7
Q ss_pred CCccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHH
Q 009782 55 TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134 (526)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 134 (526)
+...++.++..+.+.|++++|+.++++|.. ..|+..++..++.+|.+.|++++|.++|+.+... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 334566777777888999999999999985 4568889999999999999999999999988754 688899999999
Q ss_pred HHHhcCChhHHHHHHhccccCC-----------------CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-ch
Q 009782 135 LYATFGLIDEAHQVFDQMSNRT-----------------AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ-FT 196 (526)
Q Consensus 135 ~~~~~g~~~~a~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t 196 (526)
+|.+.|++++|.++|+++.... .++.+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 236 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEA 236 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHH
Confidence 9999999999999999654332 134789999999999999999999999998864 433 23
Q ss_pred HHH--------------------------------------HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009782 197 FPR--------------------------------------VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238 (526)
Q Consensus 197 ~~~--------------------------------------ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 238 (526)
+.. ++..|.+.|++++|.++|+++.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 222 244566788999999999998766 5889999999999
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHH
Q 009782 239 YAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGA 312 (526)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~ 312 (526)
|.+.|++++|.++|+++.+ .+..+|+.++.++.+.|++++|.++++++.+.. ..+..++..+...+ |++++|.
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999998863 477899999999999999999999999998653 34566666665555 9999999
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCC
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~ 386 (526)
.+++.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|..+..+ .|+.++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9999998864 34678999999999999999999999998763 466788887776 588999999999999853
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCc--hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHH
Q 009782 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY---GISPR--VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPV 460 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 460 (526)
+.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.+.+.+...| +..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 3367899999999999999999999999998753 55777 78999999999999999999999988887778 569
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
+|..++..|.+.|++++|.+.+++++++.|+++.++..++.+|.
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988774
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.8e-28 Score=230.92 Aligned_cols=371 Identities=14% Similarity=0.139 Sum_probs=260.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
+.|++++|++.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..++..+...+.+.|++++|+.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456667777766666655322 44455555556666667777776666666543 4556666666677777777777777
Q ss_pred HHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 009782 148 VFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225 (526)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 225 (526)
.|+++...+|+. .+|..+..++.+.|++++|.+.|+++.+. .|+.. .+..+...+...|++++|.+.|+++.+..
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 776665555432 45666666667777777777777666654 23333 44555556666667777777666666553
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 009782 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302 (526)
Q Consensus 226 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 302 (526)
+.+..+|..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++..... |
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p--------- 234 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--P--------- 234 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--T---------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c---------
Confidence 33455666666666666666666666665543 233455566666666666666666666555431 1
Q ss_pred HHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHH
Q 009782 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382 (526)
Q Consensus 303 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~ 382 (526)
.+..++..+..+|.+.|++++|...|++ +.
T Consensus 235 ----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------------------al 264 (388)
T 1w3b_A 235 ----------------------NHAVVHGNLACVYYEQGLIDLAIDTYRR----------------------------AI 264 (388)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------------HH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------HH
Confidence 1344556677777777777777666654 33
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HH
Q 009782 383 RDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PV 460 (526)
Q Consensus 383 ~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 460 (526)
+ ..| +..++..+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.+.+.+...|+ ..
T Consensus 265 ~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 265 E--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp H--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred h--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 4 234 4568899999999999999999999999875 4567889999999999999999999999889988886 48
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
++..+...+.+.|++++|...+++++++.|+++.+|..++.+|...|+
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 899999999999999999999999999999999999999999988774
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.3e-29 Score=247.73 Aligned_cols=212 Identities=13% Similarity=0.158 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 176 EDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 176 ~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
..+..+.+++.+.+..+... .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34555666777666655443 57778888888888888888888888888888888888888888776643211
Q ss_pred cCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHh
Q 009782 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIAN 331 (526)
Q Consensus 255 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 331 (526)
.+.+..+.|.++|++|...|+.||..||+++|.+| |++++|.+++++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 12234455666666666666666666666666655 56666666666666666666666677
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 411 (526)
++|.+|++.|++++|.++|+ +|.+.|+.||..||++||.+|++.|++++|.+
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~----------------------------~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDA----------------------------HMVESEVVPEEPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----------------------------HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH----------------------------HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence 77778887777766555544 56677788888888888888888888888888
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHh
Q 009782 412 LFSVMVEKYGISPRVEHYACMVNLYGR 438 (526)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~l~~~~~~ 438 (526)
++++|.+. |..|+..||+.++..|..
T Consensus 197 ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 197 TLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 88888777 888888888888777765
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.1e-30 Score=250.01 Aligned_cols=208 Identities=12% Similarity=0.029 Sum_probs=171.0
Q ss_pred HHHHHHHHHhhCCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 009782 74 SIIQDLESSVQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152 (526)
Q Consensus 74 ~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 152 (526)
.+..+.+.+.+.+....+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4455566777777666554 58889999999999999999999999999999999999999999887754321
Q ss_pred ccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 009782 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232 (526)
Q Consensus 153 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 232 (526)
.+.+.++.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 123456889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 009782 233 NALVDMYAKCGDIVKARTVFDRIG----NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305 (526)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 305 (526)
+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..+
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 999999999999999999999886 4788999999999999999999999999999999999999998888776
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.1e-27 Score=225.59 Aligned_cols=357 Identities=14% Similarity=0.118 Sum_probs=297.1
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChH
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYE 176 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 176 (526)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++.....+|. +.+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455678899999999999888764 556677777888888999999999999888776654 467999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009782 177 DAIALYFQMEEEGVEPDQ-FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 177 ~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 255 (526)
+|++.|+++.+. .|+. .+|..+..++...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999875 3544 478889999999999999999999988874 345567777888888899999999999877
Q ss_pred CC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhH
Q 009782 256 GN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332 (526)
Q Consensus 256 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 332 (526)
.+ .+..+|..+...+...|++++|...|+++.+.+ |+ +...+..
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-------------------------------~~~~~~~ 208 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN-------------------------------FLDAYIN 208 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-------------------------------cHHHHHH
Confidence 54 345788888889999999999999998887742 22 3344566
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 009782 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGER 411 (526)
Q Consensus 333 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 411 (526)
+...+...|++++|...|++ ... ..| +..++..+...+...|++++|.+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~----------------------------al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLR----------------------------ALS--LSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHH----------------------------HHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH----------------------------HHh--hCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777778877777766653 333 344 46788899999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
.++++.+. .+.+..+|..+...+.+.|++++|.+.|.+.+...| +..++..+...+...|++++|...++++++..|
T Consensus 259 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 259 TYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999863 333678899999999999999999999988887777 458899999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
++..++..++.+|.+.|++++|.+.++++.+..
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998754
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.3e-23 Score=206.74 Aligned_cols=425 Identities=10% Similarity=-0.020 Sum_probs=266.8
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGY 169 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~ 169 (526)
...+......+.+.|++++|.+.|+.+.+.. |+..++..+..++.+.|++++|+..|+++...+|+. .+|..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3455666677888899999999999888875 678888888899999999999999998887766643 6788888899
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCCHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV---DMYAKCGDIV 246 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li---~~~~~~g~~~ 246 (526)
.+.|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+...+..-. ..........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999888765 3444455555554443333333333332222221111111000000 0000011111
Q ss_pred HHHHHHhhcCC---------C-CcccHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCCCCc-------H-HHHHH
Q 009782 247 KARTVFDRIGN---------K-DLISYNSMLTGYIH---HGLLVEAFDIFRGMIL-----NGFDPD-------P-VAISS 300 (526)
Q Consensus 247 ~A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~~~p~-------~-~~~~~ 300 (526)
.+...+..... + +...+......+.. .|++++|...|+++.+ ....|+ . ..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111111 1 12233333333333 5666666666666665 211111 1 11111
Q ss_pred HHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCc
Q 009782 301 ILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKD 371 (526)
Q Consensus 301 ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~ 371 (526)
+...+ |+++.|...++.+.+.... ...+..+..+|...|++++|...++++.+ .+...+..+... .|+.
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 11111 6666666666666665544 66667777778888888888777776654 233344444333 5777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 009782 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (526)
++|...+++..+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+.+
T Consensus 321 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777422 23457777888888888888888888888764 233566777888888888888888888866
Q ss_pred hcCCCCCH-------HHHHHHHHHHHh---cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 452 KMEFEASP-------VVWGALLYACYL---HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 452 ~~~~~p~~-------~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+...|+. ..+..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66544433 277788888888 88888888888888888888888888888888888888888888888765
Q ss_pred CC
Q 009782 522 RG 523 (526)
Q Consensus 522 ~g 523 (526)
.+
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 43
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.8e-22 Score=197.93 Aligned_cols=348 Identities=11% Similarity=0.034 Sum_probs=220.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISG 168 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~ 168 (526)
+...+..+...+.+.|++++|.++|+.+.+.. +.+..++..+..++...|++++|...|+++...+|+ +.+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 56777778888888888888888888888764 556778888888888888888888888887766554 3677888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCc----chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 169 YAELGEYEDAIALYFQMEEEGVEPDQ----FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
+.+.|++++|.+.|+++.+. .|+. ..+..+...+.. ..+..+...+.+.|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 88888888888888888764 3433 344444332100 011122333444555
Q ss_pred HHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 009782 245 IVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321 (526)
Q Consensus 245 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 321 (526)
+++|...|+++.+ .+...+..+..+|.+.|++++|.+.|+++.+..
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------- 207 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK------------------------------- 207 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------
Confidence 5555555554432 234455555555555566666666555554421
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
+.+..++..+..+|...|++++|...|+++.+ |+.... ...+..+. ....+..+...
T Consensus 208 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------------~~~~~~~~------~~~~~~~~~~~ 266 (450)
T 2y4t_A 208 --NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC-------------FAHYKQVK------KLNKLIESAEE 266 (450)
T ss_dssp --CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------------HHHHHHHH------HHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHH-------------HHHHHHHH------HHHHHHHHHHH
Confidence 11233444555555555555555555554331 111100 00000000 01122334667
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcC
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPR-----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHG 473 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 473 (526)
+...|++++|...|+.+.+. .|+ ...+..++..+.+.|++++|++.+.+.+...| +...|..++.+|...|
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 77788888888888888764 343 34677778888888888888888877777667 4577888888888888
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHH------------HHhcC-----ChHHHHHHHHH
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKI------------YGNAG-----RLDDVERVERM 518 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 518 (526)
++++|...+++++++.|+++.++..+..+ |...| +.+++.+.+++
T Consensus 344 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 88888888888888888888877777743 44444 55566666665
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2e-22 Score=201.10 Aligned_cols=397 Identities=9% Similarity=-0.013 Sum_probs=272.6
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHH
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 145 (526)
+.+.|++++|+..++.+.+.. |+...+..+..++...|++++|.+.++.+.+.. +.+..++..+..++.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 346789999999999999876 689999999999999999999999999999876 66778999999999999999999
Q ss_pred HHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------------------------------
Q 009782 146 HQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD------------------------------- 193 (526)
Q Consensus 146 ~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------------------------------- 193 (526)
...|+++...+|.. .....++..+........+.+.+..+...+..|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 93 MFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 99999987776532 3444455544443333333333322211111111
Q ss_pred -------------cchHHHHHHHHh---ccCChHHHHHHHHHHHH-----hCC--------CCchhHHHHHHHHHHhcCC
Q 009782 194 -------------QFTFPRVLKACA---GLGLIRVGEKVHLDAVR-----FGF--------GFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 194 -------------~~t~~~ll~~~~---~~g~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~li~~~~~~g~ 244 (526)
...+......+. ..|++++|...++++.+ ..- +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 112222222222 25666666666666655 200 1223455555666666666
Q ss_pred HHHHHHHHhhcCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhC
Q 009782 245 IVKARTVFDRIGN--KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322 (526)
Q Consensus 245 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 322 (526)
+++|...|+++.+ |+...+..+...+...|++++|...++++....
T Consensus 253 ~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------- 300 (514)
T 2gw1_A 253 PLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-------------------------------- 300 (514)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--------------------------------
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--------------------------------
Confidence 6666666655432 224455555666666666666666666655432
Q ss_pred CCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 009782 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSL 396 (526)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 396 (526)
+.+...+..+..+|...|++++|...++++.+ .+...+..+... .|+.++|...++++.+.. +.+...+..+
T Consensus 301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 378 (514)
T 2gw1_A 301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFF 378 (514)
T ss_dssp -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHH
Confidence 12344556677777777777777777776542 233444444444 466677888888877642 2245688889
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHh---cCChHHHHHHHHhhcCCCCC-HHHHHHHHHH
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGR---AGLIDEAYSMIVEKMEFEAS-PVVWGALLYA 468 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 468 (526)
...+...|++++|...++.+.+...-.++ ...+..+...+.. .|++++|.+.+.+.+...|+ ..++..+...
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 99999999999999999999875222222 3388999999999 99999999999888877785 5788899999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
+...|++++|...+++++++.|+++..+..+
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999988766655
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=9.7e-22 Score=192.69 Aligned_cols=298 Identities=11% Similarity=0.057 Sum_probs=201.9
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+...+..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344445555555555555555555554431 2234444445555555555555555555555443 22344444555555
Q ss_pred HhcCCHHHHHHHHhhcCCCCc------ccHHH------------HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 009782 240 AKCGDIVKARTVFDRIGNKDL------ISYNS------------MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~------~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 301 (526)
.+.|++++|.+.|+++.+.+. ..+.. +...+...|++++|...|+++.+..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------- 173 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----------- 173 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 555555555555554433211 22222 2344666677777777777666531
Q ss_pred HHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHH
Q 009782 302 LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQM 381 (526)
Q Consensus 302 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m 381 (526)
+.+..++..+..+|.+.|++++|...|+++.
T Consensus 174 ----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------------- 204 (450)
T 2y4t_A 174 ----------------------VWDAELRELRAECFIKEGEPRKAISDLKAAS--------------------------- 204 (450)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH---------------------------
T ss_pred ----------------------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------------
Confidence 2245556777888888888888777776433
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHH------------HHHHHhcCChHHHHHHH
Q 009782 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM------------VNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 382 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~ 449 (526)
+. .+.+..++..+...+...|++++|...++++.+. .+.+...+..+ +..+.+.|++++|.+.|
T Consensus 205 -~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 280 (450)
T 2y4t_A 205 -KL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 280 (450)
T ss_dssp -HH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 21 1235678889999999999999999999999864 22244445444 88999999999999999
Q ss_pred HhhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 450 VEKMEFEAS-----PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 450 ~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+.+...|+ ...+..+...+.+.|++++|+..+++++++.|+++.+|..++.+|...|++++|.+.++++.+..
T Consensus 281 ~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 281 ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 888887786 34788889999999999999999999999999999999999999999999999999999998754
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.7e-21 Score=193.07 Aligned_cols=419 Identities=11% Similarity=0.013 Sum_probs=284.5
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGY 169 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~ 169 (526)
...+..+...+.+.|++++|.+.|+.+.+.. +.+...+..+..+|.+.|++++|++.|+++...+|+ +.+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4566777778888999999999999998875 567888889999999999999999999988776664 36788888999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG--FGFDGFVLNALVDMYAKCGDIVK 247 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~ 247 (526)
...|++++|+..|+.+. ..|+.. ...+..+...+....|...++.+.... ..+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS---LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHHh---cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996432 223322 122334444555677888887775431 01111112233444556666666
Q ss_pred HHHHHhhcCCCCcc---cHHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCcHH--------HHHHHHHH---h
Q 009782 248 ARTVFDRIGNKDLI---SYNSMLTGYIH--------HGLLVEAFDIFRGMILNGFDPDPV--------AISSILAN---A 305 (526)
Q Consensus 248 A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~--------~~~~ll~~---~ 305 (526)
+...+......+.. ....+...+.. .|++++|..+++++.+.. |+.. .+..+-.. .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhc
Confidence 66666655554432 22222222222 146777777777776643 3211 11111111 1
Q ss_pred hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHH
Q 009782 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFE 379 (526)
Q Consensus 306 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~ 379 (526)
|+++.|...++.+.+... +...+..+...|...|++++|...++++.+ .+...|..+... .+++++|...++
T Consensus 257 ~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 677777777777777643 366777777888888888888888877653 233444444433 577788888888
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC
Q 009782 380 QMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458 (526)
Q Consensus 380 ~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 458 (526)
+..+. .| +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+.+.+...|+
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 88774 33 3467888888889999999999999998875 3445778888899999999999999999666644332
Q ss_pred H-------HHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 459 P-------VVWGALLYACYLH----------GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 459 ~-------~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
. ..+......+... |++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2 2244445667777 9999999999999999999999999999999999999999999988876
Q ss_pred CC
Q 009782 522 RG 523 (526)
Q Consensus 522 ~g 523 (526)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.8e-20 Score=188.13 Aligned_cols=422 Identities=8% Similarity=-0.021 Sum_probs=289.9
Q ss_pred CCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 65 PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 65 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
.+.+.|++++|+..++.+.+..+. ++..+..+..++.+.|++++|.+.++.+.+.. +.+..++..+..++...|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 345778899999999999987644 78899999999999999999999999999876 6678899999999999999999
Q ss_pred HHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG--VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 145 a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
|...|+.+ ...| ...+..+..+...+....|...++++.... ..+........+..+....+.+.+...+.....
T Consensus 112 A~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 112 AMFDLSVL-SLNG--DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHHH-C-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHHH-hcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 99999744 4444 223334555666666788999998886531 011111112233334444444444333222111
Q ss_pred hCCCCch-hHHHHHHHHHHh--------cCCHHHHHHHHhhcCCCCc----------ccHHHHHHHHHhCCChHHHHHHH
Q 009782 223 FGFGFDG-FVLNALVDMYAK--------CGDIVKARTVFDRIGNKDL----------ISYNSMLTGYIHHGLLVEAFDIF 283 (526)
Q Consensus 223 ~g~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~a~~~~ 283 (526)
..+.. .....+...+.. .|++++|..+|+++.+.++ .++..+...+...|++++|...+
T Consensus 189 --~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 189 --YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp --SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 11111 122222222221 2467888888877765322 24566667778888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--C-C
Q 009782 284 RGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--K-D 357 (526)
Q Consensus 284 ~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~ 357 (526)
++..+. .|+...+..+-..+ |+++.|...++.+.+... .+..++..+..++...|++++|...|+++.+ | +
T Consensus 267 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 267 QESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 888775 34544444444443 788888888888877653 3567788888999999999999999887764 2 3
Q ss_pred hhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----chhHHH
Q 009782 358 VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RVEHYA 430 (526)
Q Consensus 358 ~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~ 430 (526)
...+..+... .|+.++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+...-.+ ....+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 3444444444 688899999999988752 22456888899999999999999999999876521111 122344
Q ss_pred HHHHHHHhc----------CChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHH
Q 009782 431 CMVNLYGRA----------GLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 431 ~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (526)
.+...+.+. |++++|...+.+.+...|+ ...+..+...+...|++++|.+.+++++++.|.+.....
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 556777777 9999999999888888885 588899999999999999999999999999999776544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=4e-19 Score=168.24 Aligned_cols=339 Identities=10% Similarity=0.009 Sum_probs=218.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISG 168 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~ 168 (526)
++..+..+...+...|++++|.+.|+.+.+.. +.+..++..+...+...|++++|...|+++...+|+ +..|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34556666677777788888888888777754 455677777777777888888888888777665553 3567777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC----CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 169 YAELGEYEDAIALYFQMEEEGVEP----DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
+...|++++|...|++..+. .| +...+..+.... . ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccC
Confidence 77778888888888777753 34 222222221000 0 0011223445555666
Q ss_pred HHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 009782 245 IVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321 (526)
Q Consensus 245 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 321 (526)
+++|.+.|+++.+ .+...+..+...+...|++++|...+++..+.. |+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------------- 186 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SD--------------------------- 186 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SC---------------------------
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC---------------------------
Confidence 6666666655432 234455566666666666666666666665531 11
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 009782 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401 (526)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 401 (526)
+...+..+...|...|++++|...|++..+. ......+...+..+. .......+...+.
T Consensus 187 ----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----------~~~~~~~~~~~~~~~------~~~~~~~~a~~~~ 245 (359)
T 3ieg_A 187 ----NTEAFYKISTLYYQLGDHELSLSEVRECLKL-----------DQDHKRCFAHYKQVK------KLNKLIESAEELI 245 (359)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------CccchHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 2333445556666666666666665543310 000111111111111 1122334466788
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCc-h----hHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCh
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPR-V----EHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNV 475 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 475 (526)
..|++++|...++++.+. .|+ . ..+..+...+...|++++|.+.+.+.+...| +..++..+...+...|++
T Consensus 246 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 246 RDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH
Confidence 899999999999999875 233 2 3355678899999999999999988888788 558899999999999999
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
++|...+++++++.|++..++..+..++...+
T Consensus 323 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 323 DEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999998888888876544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=8e-19 Score=166.16 Aligned_cols=313 Identities=11% Similarity=0.017 Sum_probs=196.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 009782 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206 (526)
Q Consensus 128 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 206 (526)
.+..+...+...|++++|...|+++...+|+ +.+|..+...+...|++++|+..|+++.+.. +.+...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 3444444444455555555555444433332 2344444444444455555555544444431 1122344444444444
Q ss_pred cCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHH
Q 009782 207 LGLIRVGEKVHLDAVRFGFG--FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284 (526)
Q Consensus 207 ~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 284 (526)
.|++++|...++.+.+.... .+...+..+...+. + ..+..+...+...|++++|.+.++
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~------------~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M------------QRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H------------HHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444444433100 11111111111110 0 012223556677777777777777
Q ss_pred HHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHH
Q 009782 285 GMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364 (526)
Q Consensus 285 ~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 364 (526)
++.+.. +.+...+..+..++...|++++|...++++.
T Consensus 145 ~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---------- 181 (359)
T 3ieg_A 145 KILEVC---------------------------------VWDAELRELRAECFIKEGEPRKAISDLKAAS---------- 181 (359)
T ss_dssp HHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHhC---------------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH----------
Confidence 766532 1234455667778888888888777776543
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHH------------HH
Q 009782 365 IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA------------CM 432 (526)
Q Consensus 365 i~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~------------~l 432 (526)
+. .+.+..++..+...+...|++++|...++.+.+. .+.+...+. .+
T Consensus 182 ------------------~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 182 ------------------KL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp ------------------TT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHH
Confidence 21 1235668888999999999999999999999875 222333332 33
Q ss_pred HHHHHhcCChHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 433 VNLYGRAGLIDEAYSMIVEKMEFEASP-----VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
...+.+.|++++|.+.+.+.+...|+. ..+..+...+...|++++|...++++++..|+++.++..++.+|...|
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 677899999999999998888777764 234557788999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 009782 508 RLDDVERVERMLVDRGL 524 (526)
Q Consensus 508 ~~~~A~~~~~~m~~~g~ 524 (526)
++++|.+.++++.+...
T Consensus 321 ~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 321 MYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp CHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 99999999999987653
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.3e-18 Score=159.92 Aligned_cols=287 Identities=12% Similarity=-0.010 Sum_probs=208.0
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 556666666777777777777777766643 2344455556666677777777777777776654 34556667777777
Q ss_pred HhcC-CHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHH
Q 009782 240 AKCG-DIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVH 315 (526)
Q Consensus 240 ~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~ 315 (526)
...| ++++|...|++..+ .+...|..+...+...|++++|...+++..+.. |
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~---------------------- 156 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--K---------------------- 156 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--T----------------------
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--c----------------------
Confidence 7777 77777777776653 244567777778888888888888887776642 1
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 009782 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVS 395 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 395 (526)
.+...+..+...|...|++++|...++++.+ . .+.+...+..
T Consensus 157 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----------------------------~-~~~~~~~~~~ 198 (330)
T 3hym_B 157 ---------GCHLPMLYIGLEYGLTNNSKLAERFFSQALS----------------------------I-APEDPFVMHE 198 (330)
T ss_dssp ---------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT----------------------------T-CTTCHHHHHH
T ss_pred ---------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----------------------------h-CCCChHHHHH
Confidence 1233344566777778887777777765432 1 1224567888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHH
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYG-------ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLY 467 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 467 (526)
+...+...|++++|...++++.+... .+.+...+..+...|...|++++|.+.+.+.+...|+ ...+..+..
T Consensus 199 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~ 278 (330)
T 3hym_B 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGY 278 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 88888889999999999988876421 1334678889999999999999999999888877775 488889999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH-HhcCChH
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY-GNAGRLD 510 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 510 (526)
.+...|++++|...+++++++.|+++.++..++.++ ...|+.+
T Consensus 279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 279 IHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999988 4556544
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.5e-16 Score=157.37 Aligned_cols=406 Identities=10% Similarity=0.035 Sum_probs=259.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 169 (526)
+...+..++.. .+.|+++.|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++.....|++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 66667777763 56777777777777777653 55666777777777777777777777777777666555565555432
Q ss_pred -HhcCChHHHHH----HHHHHHHc-CCCCC-cchHHHHHHHHhc---------cCChHHHHHHHHHHHHhCCCCchhHHH
Q 009782 170 -AELGEYEDAIA----LYFQMEEE-GVEPD-QFTFPRVLKACAG---------LGLIRVGEKVHLDAVRFGFGFDGFVLN 233 (526)
Q Consensus 170 -~~~~~~~~a~~----~~~~m~~~-~~~p~-~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~~g~~~~~~~~~ 233 (526)
...|+.+.|.+ +|++.... |..|+ ...|...+..... .|+++.|..+|+...+.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 34566665554 55555432 44333 3345555544433 566777777777666521111112222
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH------HcC---CCCcH--------H
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI------LNG---FDPDP--------V 296 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~------~~~---~~p~~--------~ 296 (526)
.........|. ..+..++. .+.+++..|..++.++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 22211100110 01111111 02234555655555422 111 23331 2
Q ss_pred HHHHHHHHh-h------h----hHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh-------cCChH-------HHHHHhc
Q 009782 297 AISSILANA-S------L----LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK-------DGKLD-------QACWLFD 351 (526)
Q Consensus 297 ~~~~ll~~~-~------~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~ 351 (526)
.+...+.-. + + .+.+..++++.+... +.++..|..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 222222111 1 1 135566777777653 3467788888888775 68887 8999998
Q ss_pred cCCC---CC-hhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 009782 352 HMPQ---KD-VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH--LTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422 (526)
Q Consensus 352 ~~~~---~~-~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 422 (526)
+..+ |+ ...|..+... .|+.++|..+|++..+ +.|+. ..|..++..+.+.|++++|.++|+++.+.
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--- 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--- 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 8764 43 4455444443 6889999999999998 45652 47888888888999999999999999853
Q ss_pred CC-chhHHHHHHHH-HHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc----h
Q 009782 423 SP-RVEHYACMVNL-YGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH----N 495 (526)
Q Consensus 423 ~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~ 495 (526)
.| +...|...+.. +...|+.++|..+|.+.+...|+ +..|..++..+.+.|+.++|..+|++++...|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 34 33333332222 34689999999999888888885 588899999999999999999999999998776655 7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 496 FELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
|...+......|+.+.+.++.+++.+
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888999999999999988764
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=6.7e-18 Score=157.87 Aligned_cols=269 Identities=10% Similarity=-0.026 Sum_probs=215.0
Q ss_pred CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHH
Q 009782 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSM 266 (526)
Q Consensus 190 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 266 (526)
.+.+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|...++++.+ .+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 45566777788888888899999999999888765 44556666777888888899988888887754 356678888
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHH
Q 009782 267 LTGYIHHG-LLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345 (526)
Q Consensus 267 i~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (526)
...+...| ++++|...|++..+.. | .+...+..+..++...|++++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~--~-------------------------------~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE--K-------------------------------TYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC--T-------------------------------TCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC--C-------------------------------ccHHHHHHHHHHHHHccCHHH
Confidence 88888888 8888888888877642 2 134456677788888888888
Q ss_pred HHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 009782 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425 (526)
Q Consensus 346 A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 425 (526)
|...++++. +.. +.+...+..+...+...|++++|.+.++++.+. .+.+
T Consensus 144 A~~~~~~a~----------------------------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~ 192 (330)
T 3hym_B 144 AMAAYFTAA----------------------------QLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APED 192 (330)
T ss_dssp HHHHHHHHH----------------------------HHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHHH----------------------------Hhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCC
Confidence 877776433 211 123456777888999999999999999999863 3446
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCC---------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFE---------A-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
...+..+...+...|++++|...+.+.+... | ...++..+...+...|++++|+..++++++..|++..+
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 272 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHH
Confidence 7889999999999999999999997766432 3 34789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 496 FELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+..++.+|.+.|++++|.+.++++.+..
T Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999887654
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.6e-18 Score=163.39 Aligned_cols=295 Identities=11% Similarity=-0.045 Sum_probs=196.2
Q ss_pred cCChhHHHH-HHhccccCCC-----CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHH
Q 009782 139 FGLIDEAHQ-VFDQMSNRTA-----FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212 (526)
Q Consensus 139 ~g~~~~a~~-~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 212 (526)
.|++++|.+ .|++.....+ +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 467777777 7775543322 23557777778888888888888888877653 3345567777777777777777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 213 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
|...++.+.+.. +.+..++..+...|...|++++|.+.|+++...+. ..+..+... ...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-----------------AGG 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-----------------hhh
Confidence 777777777664 33555666666666666666666666655432111 111000000 000
Q ss_pred CCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcC
Q 009782 290 GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369 (526)
Q Consensus 290 ~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 369 (526)
. . ....+..+...+ ..|++++|...|+
T Consensus 179 -~--------------------------------~-~~~~~~~~~~~~-~~~~~~~A~~~~~------------------ 205 (368)
T 1fch_A 179 -A--------------------------------G-LGPSKRILGSLL-SDSLFLEVKELFL------------------ 205 (368)
T ss_dssp -----------------------------------------CTTHHHH-HHHHHHHHHHHHH------------------
T ss_pred -h--------------------------------c-ccHHHHHHHHHh-hcccHHHHHHHHH------------------
Confidence 0 0 000011111222 4555555555444
Q ss_pred CchHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH
Q 009782 370 KDHEALIYFEQMERDGVLP---DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 370 ~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 446 (526)
++.+ ..| +..++..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.
T Consensus 206 ----------~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 206 ----------AAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp ----------HHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------HHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3333 223 4678888899999999999999999998874 3446788999999999999999999
Q ss_pred HHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-----------cchHHHHHHHHHhcCChHHHHH
Q 009782 447 SMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN-----------EHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 447 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
+.+.+.+...|+ ...+..+...+.+.|++++|...+++++++.|++ ..+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999888887775 5888999999999999999999999999988877 7889999999999999999998
Q ss_pred HHHHH
Q 009782 515 VERML 519 (526)
Q Consensus 515 ~~~~m 519 (526)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.4e-15 Score=150.38 Aligned_cols=360 Identities=12% Similarity=0.037 Sum_probs=245.2
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh----cCChhHHHH
Q 009782 76 IQDLESSVQNGITVQTETFASLLETCYQ----LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT----FGLIDEAHQ 147 (526)
Q Consensus 76 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~ 147 (526)
+..++...+.| ++..+..+-..+.. .+++++|.+.|+...+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455554444 66777777777776 788888888888887764 56677778888877 788888888
Q ss_pred HHhccccCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc----cCChHHHHHHHHH
Q 009782 148 VFDQMSNRTAFAFPWNSLISGYAE----LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG----LGLIRVGEKVHLD 219 (526)
Q Consensus 148 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~ 219 (526)
.|++..+.+ ++..+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|.+.|+.
T Consensus 101 ~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 101 WYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 888876654 23566677777777 778888888888887765 45566667777765 6788888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 009782 220 AVRFGFGFDGFVLNALVDMYAK----CGDIVKARTVFDRIGN-KDLISYNSMLTGYIH----HGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 220 ~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 290 (526)
..+.| +...+..+...|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|...|++..+.|
T Consensus 177 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 177 AAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 87765 56667777777777 7888888888876654 345566667777765 677888888887776654
Q ss_pred CCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCChHHHHHHhccCCCC-ChhHHHHHH
Q 009782 291 FDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK----DGKLDQACWLFDHMPQK-DVVSWNSII 365 (526)
Q Consensus 291 ~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li 365 (526)
. ...+..+...|.. .+++++|...|++..+. +...+..+-
T Consensus 254 ~-----------------------------------~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 298 (490)
T 2xm6_A 254 N-----------------------------------SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLA 298 (490)
T ss_dssp C-----------------------------------HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred C-----------------------------------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 2222333444444 56666666666654432 222222221
Q ss_pred Hh---c-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009782 366 HA---H-----SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG---SVKVGERLFSVMVEKYGISPRVEHYACMVN 434 (526)
Q Consensus 366 ~~---~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 434 (526)
.. . ++.++|..++++..+.| +...+..+...+...| +.++|.+.|++..+. .+...+..|..
T Consensus 299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~ 371 (490)
T 2xm6_A 299 HLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGN 371 (490)
T ss_dssp HHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHH
Confidence 11 1 45566777777776654 3455666666666545 677888888887764 35667777777
Q ss_pred HHHh----cCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCC
Q 009782 435 LYGR----AGLIDEAYSMIVEKMEFEASPVVWGALLYACYL----HGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 435 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 491 (526)
.|.. .+++++|.+.|.++... .++..+..+...|.. .++.++|...|+++.+..|+
T Consensus 372 ~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 372 ALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 7777 77888888888666653 356677777777777 78888888888888887765
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.3e-19 Score=167.18 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=112.3
Q ss_pred hcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 009782 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217 (526)
Q Consensus 138 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 217 (526)
+.|++++|.++++++... .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~~~----~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 567788888888887332 56888888888888888888888542 56668888888888888888888877
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH
Q 009782 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297 (526)
Q Consensus 218 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 297 (526)
+...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+.
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---------- 149 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------- 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHTT----------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------
Confidence 766653 44567777888888888888888777753 666788888888888888888888887651
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHH
Q 009782 298 ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377 (526)
Q Consensus 298 ~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~ 377 (526)
.|..++.++.+.|++++|.+.++++.
T Consensus 150 -------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA~----------------------- 175 (449)
T 1b89_A 150 -------------------------------NFGRLASTLVHLGEYQAAVDGARKAN----------------------- 175 (449)
T ss_dssp -------------------------------CHHHHHHHHHTTTCHHHHHHHHHHHT-----------------------
T ss_pred -------------------------------hHHHHHHHHHHhccHHHHHHHHHHcC-----------------------
Confidence 24667777777777777777666432
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC
Q 009782 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457 (526)
Q Consensus 378 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 457 (526)
+..+|..++.+|...|+++.|...... +..++.....++..|.+.|++++|..+++..++..+
T Consensus 176 -----------~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 176 -----------STRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred -----------CchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 556777777777777777777443332 112333344577777777777777777777777665
Q ss_pred CH-HHHHHHHHHHHh--cCChHHHHHHHHHHHccCC-----CCcchHHHHHHHHHhcCChHHHHHH
Q 009782 458 SP-VVWGALLYACYL--HGNVCMGETAAQKLFELEP-----DNEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 458 ~~-~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
.. ..|+-+.-+|++ -++..+.++.|.....+.| .+...|..++-.|.+-|+|+.|...
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 33 666666655554 3345555555554444445 5667777788888888888877654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=8e-18 Score=159.92 Aligned_cols=273 Identities=9% Similarity=-0.051 Sum_probs=180.5
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 457777777777777777777777777653 2345566666666666677777777666666553 22344444444444
Q ss_pred HhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009782 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVL 319 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~ 319 (526)
.. .|++++|...++++.+. .|+.......+
T Consensus 144 ~~-------------------------------~g~~~~A~~~~~~al~~--~p~~~~~~~~~----------------- 173 (365)
T 4eqf_A 144 TN-------------------------------TSHQQDACEALKNWIKQ--NPKYKYLVKNK----------------- 173 (365)
T ss_dssp HH-------------------------------TTCHHHHHHHHHHHHHH--CHHHHCC---------------------
T ss_pred Hc-------------------------------cccHHHHHHHHHHHHHh--CccchHHHhhh-----------------
Confidence 44 44555555555544442 22221110000
Q ss_pred HhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 009782 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDG-VLPDHLTFVSLLS 398 (526)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~ 398 (526)
......+..+...+...|++++|...|+++ .+.. -.++..++..+..
T Consensus 174 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------------l~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 174 ----KGSPGLTRRMSKSPVDSSVLEGVKELYLEA----------------------------AHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHH----------------------------HHHSCSSCCHHHHHHHHH
T ss_pred ----ccchHHHHHHHHHHhhhhhHHHHHHHHHHH----------------------------HHhCcCccCHHHHHHHHH
Confidence 001122334555666666666666655533 2211 1125678888888
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 477 (526)
.+...|++++|...++++.+. .+.+..+|..+..+|...|++++|.+.|.+.+...|+ ..++..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 899999999999999998874 3446888999999999999999999999888888886 5888999999999999999
Q ss_pred HHHHHHHHHccCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 478 GETAAQKLFELEPD------------NEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 478 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
|...+++++++.|+ +..+|..++.++...|+.+.|.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988766 366799999999999999999887654
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=3.4e-17 Score=149.45 Aligned_cols=269 Identities=10% Similarity=-0.015 Sum_probs=180.7
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHH
Q 009782 204 CAGLGLIRVGEKVHLDAVRFGFGFDG--FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 281 (526)
....|++..|+...+..... .|+. .....+..+|...|+++.|...++....++..++..+...+...|+.++|.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34456666666655543322 2222 2334456677777777777776665444455566666777777777777777
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHH
Q 009782 282 IFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361 (526)
Q Consensus 282 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 361 (526)
.++++...+..|+.. ..+..+..++...|++++|++.+++ ..+...+
T Consensus 87 ~l~~ll~~~~~P~~~-------------------------------~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~ 133 (291)
T 3mkr_A 87 ELDREMSRSVDVTNT-------------------------------TFLLMAASIYFYDQNPDAALRTLHQ--GDSLECM 133 (291)
T ss_dssp HHHHHHHSCCCCSCH-------------------------------HHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHH
T ss_pred HHHHHHhcccCCCCH-------------------------------HHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHH
Confidence 777776655445432 2334455677777777777777776 2334444
Q ss_pred HHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009782 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF---VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435 (526)
Q Consensus 362 ~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 435 (526)
..+... .|+.++|.+.++++.+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~ 209 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAAC 209 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 443333 46777777777777774 4554311 22334445568999999999999875 45678888999999
Q ss_pred HHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHH-HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHH
Q 009782 436 YGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCM-GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513 (526)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 513 (526)
+.+.|++++|.+.+.+.+...|+ +.++..++..+...|+.++ +.+++++++++.|+++.+. ....+.+.++++.
T Consensus 210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLV 285 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHH
Confidence 99999999999999888888884 5788889999999998865 5788899999999987643 3455555666655
Q ss_pred HH
Q 009782 514 RV 515 (526)
Q Consensus 514 ~~ 515 (526)
.-
T Consensus 286 ~~ 287 (291)
T 3mkr_A 286 LQ 287 (291)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.3e-15 Score=150.49 Aligned_cols=366 Identities=13% Similarity=0.057 Sum_probs=270.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh----cC
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASLLETCYQ----LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT----FG 140 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g 140 (526)
.+++++|+..++...+.| ++..+..+-..+.. .+++++|.+.|+...+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 578899999999998875 67788888888888 899999999999998865 66777888888888 78
Q ss_pred ChhHHHHHHhccccCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc----cCChHH
Q 009782 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAE----LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG----LGLIRV 212 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~ 212 (526)
++++|.+.|++..+.+ ++.++..|...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++
T Consensus 130 ~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 9999999999987664 23677888888887 789999999999998865 66778888888877 899999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCcccHHHHHHHHHh----CCChHHHHHHH
Q 009782 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAK----CGDIVKARTVFDRIGN-KDLISYNSMLTGYIH----HGLLVEAFDIF 283 (526)
Q Consensus 213 a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~ 283 (526)
|.+.|+...+.| +...+..+...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|...|
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 999999998876 55677778888886 8999999999988765 456677778888888 89999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc-----CChHHHHHHhccCCC-CC
Q 009782 284 RGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD-----GKLDQACWLFDHMPQ-KD 357 (526)
Q Consensus 284 ~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~ 357 (526)
++..+.|.. + .+..+...|... +++++|...|++..+ .+
T Consensus 283 ~~a~~~~~~-~----------------------------------a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~ 327 (490)
T 2xm6_A 283 RKSAEQGNS-D----------------------------------GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD 327 (490)
T ss_dssp HHHHTTTCH-H----------------------------------HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCH-H----------------------------------HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC
Confidence 998776421 1 122233333333 455555555544332 12
Q ss_pred hhHHHHHHHhc---C---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhcCCCCchh
Q 009782 358 VVSWNSIIHAH---S---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAH----LGSVKVGERLFSVMVEKYGISPRVE 427 (526)
Q Consensus 358 ~~~~~~li~~~---~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~ 427 (526)
...+..+-..+ + +.++|..+|++..+.| +...+..|...|.. .+++++|.+.|++..+. + +..
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~ 400 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSA 400 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHH
Confidence 22222221111 1 3466777777777753 56788888888888 89999999999999875 4 567
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 428 HYACMVNLYGR----AGLIDEAYSMIVEKMEFEAS----PVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 428 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
.+..|...|.. .++.++|...|.+++...|+ ......+...+. .+.+.+.+..++.++..|+
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHH
Confidence 78889999988 89999999999888876643 233333333322 2345555555555555444
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=8e-18 Score=156.84 Aligned_cols=221 Identities=11% Similarity=0.070 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
+.|++++|.++++++ +++.+|..+..++.+.|++++|.+.|.. .+|...|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 445666777777666 2334666777777777777777777643 2455566677777777777777777
Q ss_pred HHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 009782 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227 (526)
Q Consensus 148 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 227 (526)
.++...+..+++.+.+.|+.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 666665544444566677777777777777666663 255567777777777777777777777654
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhh
Q 009782 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307 (526)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 307 (526)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-------------------- 204 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV-------------------- 204 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT--------------------
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH--------------------
Confidence 356677777777777777777777662 56677777777777777777743332211
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC
Q 009782 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355 (526)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 355 (526)
..+.-...++..|.+.|++++|..+++....
T Consensus 205 -----------------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 205 -----------------VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp -----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred -----------------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 1122223577788888888888888876553
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=2e-16 Score=144.35 Aligned_cols=275 Identities=12% Similarity=-0.001 Sum_probs=194.5
Q ss_pred HHhcCChhHHHHHHhccccCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHH
Q 009782 136 YATFGLIDEAHQVFDQMSNRTAFA--FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213 (526)
Q Consensus 136 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 213 (526)
....|+++.|+..++.....+|.. .....+..+|...|+++.|+..++.. -+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345678888888777766655532 24455677788888888877755441 345666777777788888888888
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 009782 214 EKVHLDAVRFGFGF-DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292 (526)
Q Consensus 214 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 292 (526)
.+.++++...+..| +...+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 88888887766434 455666777888899999999999988 4567788889999999999999999999988753
Q ss_pred CcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCch
Q 009782 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372 (526)
Q Consensus 293 p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 372 (526)
|+..... .....+..+...|++++|.
T Consensus 161 p~~~~~~-----------------------------l~~a~~~l~~~~~~~~eA~------------------------- 186 (291)
T 3mkr_A 161 EDATLTQ-----------------------------LATAWVSLAAGGEKLQDAY------------------------- 186 (291)
T ss_dssp TTCHHHH-----------------------------HHHHHHHHHHCTTHHHHHH-------------------------
T ss_pred cCcHHHH-----------------------------HHHHHHHHHhCchHHHHHH-------------------------
Confidence 4322110 0011222333335555554
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH-HHHHHHh
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE-AYSMIVE 451 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 451 (526)
.+|+++.+. .+.+...++.+..++.+.|++++|...++++.+. -+-+..++..++..+...|+.++ +.+++.+
T Consensus 187 ---~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 187 ---YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp ---HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ---HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445555554 3457789999999999999999999999999875 34478889999999999999976 5688878
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009782 452 KMEFEASPVVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 452 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
.+...|+..... ....+.+.++++..-
T Consensus 261 ~~~~~P~~~~~~---d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 261 LKDAHRSHPFIK---EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHCTTCHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHH---HHHHHHHHHHHHHHH
Confidence 888888764332 234455555555443
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=6.4e-16 Score=152.22 Aligned_cols=380 Identities=9% Similarity=-0.045 Sum_probs=242.2
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhh-----c---cCCChhHHHHHHHHHHhcCChhHHHHHHhccccC----
Q 009782 88 TVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-----L---LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR---- 155 (526)
Q Consensus 88 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 155 (526)
......|+.+...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334667899999999999999999999887642 1 1233567889999999999999999998876321
Q ss_pred ----CCC-cccHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCcc-hHHHHHHH---HhccCChHHHHHHHHHHHHhC
Q 009782 156 ----TAF-AFPWNSLISGYAEL--GEYEDAIALYFQMEEEGVEPDQF-TFPRVLKA---CAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 156 ----~~~-~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g 224 (526)
++. +.+|..+..++... +++++|++.|++..+. .|+.. .+..+..+ +...++.++|.+.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 111 24565555555554 5789999999999875 45543 34444433 345678888999999888775
Q ss_pred CCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH
Q 009782 225 FGFDGFVLNALVDMYAK----CGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297 (526)
Q Consensus 225 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 297 (526)
+.+..++..+...+.. .|++++|.+.+++... .+...+..+...|...|++++|...+++..+. .|+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~- 281 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNA- 281 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH-
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChH-
Confidence 4455666666555544 4677889998887643 45567888999999999999999999998875 33322
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHH
Q 009782 298 ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377 (526)
Q Consensus 298 ~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~ 377 (526)
.++..+..+|...+....+...... ..........++|...
T Consensus 282 ------------------------------~~~~~lg~~y~~~~~~~~~~~~~~~---------~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 282 ------------------------------YLHCQIGCCYRAKVFQVMNLRENGM---------YGKRKLLELIGHAVAH 322 (472)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHHhhhHHHHHH---------HHHHHHHhhHHHHHHH
Confidence 2222222233211111000000000 0000011223567777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch--hHHHHHHH-HHHhcCChHHHHHHHHhhc
Q 009782 378 FEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV--EHYACMVN-LYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 378 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~ 453 (526)
+++..+. .|+ ..++..+...+...|++++|.+.|+++.+. ...+.. ..+..+.. .+...|+.++|++.|.+++
T Consensus 323 ~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 323 LKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7776663 333 357888889999999999999999999864 332221 12333332 2357899999999998999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 454 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
.+.|+...... ....+.+++++.++.+|+++.+|..|+.+|...|++++|.+.|++..+.|-
T Consensus 400 ~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 400 KINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred hcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88887643332 234456778888899999999999999999999999999999999887653
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=4.1e-14 Score=147.14 Aligned_cols=377 Identities=10% Similarity=0.080 Sum_probs=285.7
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhc--cCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNL--LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 167 (526)
++.-....+++|...|.+.+|.++++.+.-.+ +..+....+.++.+..+. +..+..++.++..... ..-+..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-----~~eIA~ 1057 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-----APDIAN 1057 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-----HHHHHH
Confidence 56666778888999999999999999988432 224556777788777777 5577777776665222 345778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 009782 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 247 (526)
.+...|.+++|..+|++... .....+.++ ...|++++|.++.++. -+..+|..+..++...|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 88889999999999999621 111222232 2678899999988754 356788899999999999999
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCC
Q 009782 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVE 324 (526)
Q Consensus 248 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~ 324 (526)
|.+.|.+. .|...|..++.++.+.|++++|.+.|....+..-.|...+ .+.-++ ++++....+ . -.
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rleele~f----I---~~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAELEEF----I---NG 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCHHHHHHH----H---hC
Confidence 99999775 6777888999999999999999999998776542222222 233333 444432222 2 13
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 009782 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401 (526)
Q Consensus 325 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 401 (526)
++...+..+...|...|++++|..+|... ..|..+... +|++++|.+.+++. -+..+|..+-.+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45566777999999999999999999985 367666666 58889999999876 35689999999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh--cCChHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYL--HGNVCMG 478 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~--~g~~~~a 478 (526)
..|++..|...... +..++..+..++..|.+.|.+++|+++++..++.+|.. ..|..+...+++ -++..++
T Consensus 1262 e~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999876553 23356677799999999999999999998899988754 677777777665 4567777
Q ss_pred HHHHHHHHccCC-----CCcchHHHHHHHHHhcCChHHHHH
Q 009782 479 ETAAQKLFELEP-----DNEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 479 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
.+.|..-..+.| .+...|..++-.|.+.|+|+.|..
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 777777666655 578889999999999999999984
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1e-16 Score=149.63 Aligned_cols=273 Identities=10% Similarity=-0.075 Sum_probs=178.9
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|.+.++.+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 456666667777777777777777776643 2344556666666667777777777777666653 33444555555555
Q ss_pred HhcCCHHHHHHHHhhcCCCC---cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHH
Q 009782 240 AKCGDIVKARTVFDRIGNKD---LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG 316 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~ 316 (526)
...|++++|.+.++++.+.+ ...+..+... .|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~----------------------- 134 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DV----------------------- 134 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HH-----------------------
Confidence 55555555555555443211 1111111000 00
Q ss_pred HHHHhCCCCchhHHhHHHH--HHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 009782 317 WVLRRGVEWDLCIANSLIV--VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFV 394 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 394 (526)
+......+.. .+...|++++|...+ +++.+.. +.+...+.
T Consensus 135 ---------~~~~~~~~~~~~~~~~~~~~~~A~~~~----------------------------~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 135 ---------DIDDLNVQSEDFFFAAPNEYRECRTLL----------------------------HAALEMN-PNDAQLHA 176 (327)
T ss_dssp --------------------CCTTSHHHHHHHHHHH----------------------------HHHHHHS-TTCHHHHH
T ss_pred ---------HHHHHHHHHHhHHHHHcccHHHHHHHH----------------------------HHHHhhC-CCCHHHHH
Confidence 0000001101 133334444444443 3333321 22566788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcC
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHG 473 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 473 (526)
.+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.+.+.+...|+ ...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 8888888889999999999988864 3346778888999999999999999999787877775 578888999999999
Q ss_pred ChHHHHHHHHHHHccCCC------------CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 474 NVCMGETAAQKLFELEPD------------NEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
++++|.+.++++++..|. +..++..++.+|.+.|++++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999888 6788999999999999999999887654
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=7.2e-15 Score=146.79 Aligned_cols=398 Identities=9% Similarity=0.014 Sum_probs=237.6
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHH-
Q 009782 58 LTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY- 136 (526)
Q Consensus 58 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~- 136 (526)
.+..++. +...|++++|..+++.+.+..+. +...+...+..+.+.|+++.|.++|+...+.. |+...|...+...
T Consensus 15 ~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVR 90 (530)
T ss_dssp HHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHH
Confidence 3333343 35578999999999999977533 77889999999999999999999999999864 5777887777543
Q ss_pred HhcCChhHHHH----HHhccccC---CC-CcccHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCc---ch
Q 009782 137 ATFGLIDEAHQ----VFDQMSNR---TA-FAFPWNSLISGYAE---------LGEYEDAIALYFQMEEEGVEPDQ---FT 196 (526)
Q Consensus 137 ~~~g~~~~a~~----~~~~~~~~---~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~---~t 196 (526)
...|+.++|.+ +|+..... ++ +...|...+....+ .|+++.|..+|++..+. |+. ..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~ 167 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQL 167 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHH
Confidence 45677777665 66665321 22 23567777776655 68899999999999872 432 22
Q ss_pred HHHHHHHHh-------------ccCChHHHHHHHHHHHHh--C-------CCCc--------hhHHHHHHHHHHhc----
Q 009782 197 FPRVLKACA-------------GLGLIRVGEKVHLDAVRF--G-------FGFD--------GFVLNALVDMYAKC---- 242 (526)
Q Consensus 197 ~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~--g-------~~~~--------~~~~~~li~~~~~~---- 242 (526)
|........ ..++++.|..++...... + ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 322222110 122334444444332110 0 1221 12222222211111
Q ss_pred CCH----HHHHHHHhhcCC---CCcccHHHHHHHHHh-------CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhh
Q 009782 243 GDI----VKARTVFDRIGN---KDLISYNSMLTGYIH-------HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308 (526)
Q Consensus 243 g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 308 (526)
++. +++..+|++... .+...|..++..+.+ .|+++.|.. ..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~-------------------------~~ 302 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL-------------------------FS 302 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH-------------------------HH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh-------------------------hh
Confidence 111 233334433332 123344444444433 344430000 00
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CC-h-hHHHHHHHh---cCCchHHHHHHHHH
Q 009782 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KD-V-VSWNSIIHA---HSKDHEALIYFEQM 381 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~li~~---~~~~~~a~~~~~~m 381 (526)
+.|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|...... .|+.++|..+|++.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 14444444444321223455556666666666666666666665543 22 1 234433332 34556666666666
Q ss_pred HHCCCCCC-HHHHHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-
Q 009782 382 ERDGVLPD-HLTFVSLLSA-CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS- 458 (526)
Q Consensus 382 ~~~~~~p~-~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 458 (526)
.+. .|+ ...|...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|.+.+...|.
T Consensus 383 l~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 383 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred Hhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 653 232 2223222222 335899999999999998752 346788999999999999999999999888765442
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 459 ----PVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 459 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
...|...+......|+.+.+..+.+++.+..|+
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 247888888888999999999999999998874
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=3e-14 Score=148.15 Aligned_cols=410 Identities=10% Similarity=0.089 Sum_probs=293.1
Q ss_pred CCccccccCCCCchHHHHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHH
Q 009782 55 TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGI--TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132 (526)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 132 (526)
+|.-.+.....+...|.+.+|++++++..-.+- .-+...-+.++....+. +.....+..+.+.. .+ ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HHHH
Confidence 333345556666788999999999999984421 12344555566555555 55655555555442 11 3346
Q ss_pred HHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChH
Q 009782 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA-ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211 (526)
Q Consensus 133 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 211 (526)
...+...|.+++|..+|++... +...+..+. ..+++++|.++.++. -+..+|..+..++...|+++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-------NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 7788889999999999999741 222223333 678899999998865 24678889999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 212 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
+|.+.|.+. .|...|..++.++.+.|++++|.+.|....+ ++....+.++.+|++.+++++...+. .
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 999998663 4777888899999999999999999977654 34444556999999999988644442 2
Q ss_pred CCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHH
Q 009782 290 GFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366 (526)
Q Consensus 290 ~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 366 (526)
.++...+..+-..| |+++.|..+|..+ ..|..+..+|++.|++++|.+.+++.. +..+|..+-.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~ 1258 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCF 1258 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHH
Confidence 23444444443333 8999999999885 478899999999999999999999875 4567766665
Q ss_pred hc---CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhc--C
Q 009782 367 AH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRA--G 440 (526)
Q Consensus 367 ~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g 440 (526)
+| +++..|...... +..+...+..++..|.+.|.+++|..+++... ++.+ ....|+-|..+|.+- +
T Consensus 1259 acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHH
Confidence 54 444455554432 34466778899999999999999999998877 4444 456677777777654 5
Q ss_pred ChHHHHHHHHhhcCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc------------cCCCCcchHHHHHHH
Q 009782 441 LIDEAYSMIVEKMEFEA------SPVVWGALLYACYLHGNVCMGETAAQKLFE------------LEPDNEHNFELLIKI 502 (526)
Q Consensus 441 ~~~~A~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~ 502 (526)
+..++.+.|...+.+.| +...|..+...|.+.|+++.|...+-.-.. ..+.|+..|...+.-
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~F 1410 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 1410 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHH
Confidence 77788888867776555 347799999999999999998843322211 246677777777777
Q ss_pred HHhcC---------------ChHHHHHHHH
Q 009782 503 YGNAG---------------RLDDVERVER 517 (526)
Q Consensus 503 ~~~~g---------------~~~~A~~~~~ 517 (526)
|...+ +++.+.++++
T Consensus 1411 yl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1411 YLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 77666 7777777766
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=3.7e-16 Score=148.37 Aligned_cols=239 Identities=10% Similarity=-0.023 Sum_probs=168.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhh
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 308 (526)
+..+...+.+.|++++|...|+++.+ .+..+|..+...|...|++++|...|+++.+.. |
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p--------------- 130 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--P--------------- 130 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T---------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C---------------
Confidence 33344444444444444444444332 234456667777777777888888887776642 2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 009782 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p 388 (526)
.+...+..+..+|...|++++|...|+++.+.+....... .....
T Consensus 131 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------------------~~~~~ 175 (365)
T 4eqf_A 131 ----------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV-------------------KNKKG 175 (365)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------
T ss_pred ----------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH-------------------hhhcc
Confidence 2345567788899999999999998886553111000000 00001
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 467 (526)
....+..+...+...|++++|.++++++.+...-.++...+..+...|...|++++|.+.+.+.+...|+ ..+|..+..
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 255 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGA 255 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2234556678899999999999999999986222226889999999999999999999999888888885 589999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.|...|++++|+..+++++++.|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998753
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=8.7e-16 Score=145.92 Aligned_cols=282 Identities=13% Similarity=-0.021 Sum_probs=209.7
Q ss_pred CchHHHHHHHHH-HHHHHhhCCC---CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCC
Q 009782 66 KTKLQALDSIIQ-DLESSVQNGI---TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141 (526)
Q Consensus 66 ~~~~~~~~~a~~-~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 141 (526)
+...+++++|++ .+++...... ..+...+..+...+.+.|++++|.+.++.+.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 345578888888 7776554322 2245678888889999999999999999998865 5677889999999999999
Q ss_pred hhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc-hHHH---------------HHHHH
Q 009782 142 IDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF-TFPR---------------VLKAC 204 (526)
Q Consensus 142 ~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~---------------ll~~~ 204 (526)
+++|.+.|+++...+|+ +.+|..+...+...|++++|++.++++.+.. |+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999988776653 4778899999999999999999999998854 3322 2221 23334
Q ss_pred hccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHH
Q 009782 205 AGLGLIRVGEKVHLDAVRFGFGF-DGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAF 280 (526)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 280 (526)
...|++++|...++.+.+..... +..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 48899999999999998875221 578889999999999999999999988753 35678899999999999999999
Q ss_pred HHHHHHHHcCCCCc-HHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCC----------chhHHhHHHHHHHhcCChHHH
Q 009782 281 DIFRGMILNGFDPD-PVAISSILANA---SLLRIGAQVHGWVLRRGVEW----------DLCIANSLIVVYSKDGKLDQA 346 (526)
Q Consensus 281 ~~~~~m~~~~~~p~-~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A 346 (526)
..|+++.+.. |+ ...+..+-..+ |++++|...++.+....... ...+|..+..+|...|++++|
T Consensus 272 ~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 272 AAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999988753 33 33333333333 88888888888887653322 267888888999999999998
Q ss_pred HHHhcc
Q 009782 347 CWLFDH 352 (526)
Q Consensus 347 ~~~~~~ 352 (526)
..+++.
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 888774
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=3.9e-18 Score=171.48 Aligned_cols=150 Identities=11% Similarity=0.176 Sum_probs=123.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhcccc-----CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHH
Q 009782 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSN-----RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199 (526)
Q Consensus 125 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 199 (526)
-..+||++|++|++.|++++|.++|++|.. ..|++++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988753 267889999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CcccHHHHHHHHHhC
Q 009782 200 VLKACAGLGLI-RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-----DLISYNSMLTGYIHH 273 (526)
Q Consensus 200 ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~ 273 (526)
+|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+.-+ .+.+...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 789999999999999999999999998777765444444443333221 133444455556554
Q ss_pred C
Q 009782 274 G 274 (526)
Q Consensus 274 g 274 (526)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=9.5e-18 Score=168.70 Aligned_cols=150 Identities=13% Similarity=0.011 Sum_probs=111.1
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEE---EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 236 (526)
.+||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 6799999999999999999999988764 5789999999999999999999999999999999999999998888888
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHH
Q 009782 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG 316 (526)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~ 316 (526)
+++++.|+. .++|.++|++|.+.|+.||..+|+.++.+.+.- ...+..+
T Consensus 208 ~glcK~G~~------------------------------~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-~vL~~Vr 256 (1134)
T 3spa_A 208 QCMGRQDQD------------------------------AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-TVLKAVH 256 (1134)
T ss_dssp HHHHHHTCC------------------------------HHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-HHHHHHG
T ss_pred HHHHhCCCc------------------------------HHHHHHHHHHHHHcCCCCChhhcccccChhhHH-HHHHHHH
Confidence 877766542 345667777788888888888888776554322 2222222
Q ss_pred HHHHhCCCCc------hhHHhHHHHHHHhcC
Q 009782 317 WVLRRGVEWD------LCIANSLIVVYSKDG 341 (526)
Q Consensus 317 ~~~~~~~~~~------~~~~~~l~~~~~~~g 341 (526)
.+ ..+..|+ ..+...|.+.|.+.+
T Consensus 257 kv-~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 257 KV-KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp GG-CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred Hh-CcccCCCCCCcccccchHHHHHHHccCC
Confidence 22 2233333 344455666666555
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=8e-15 Score=136.64 Aligned_cols=254 Identities=13% Similarity=-0.039 Sum_probs=142.1
Q ss_pred CCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 65 PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 65 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
.+...|++++|+.+++.+.+..+. +...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 334555666666666666554332 45555555556666666666666666665543 3345555556666666666666
Q ss_pred HHHHHhccccCCCCc-ccHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC
Q 009782 145 AHQVFDQMSNRTAFA-FPWNSL--------------IS-GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208 (526)
Q Consensus 145 a~~~~~~~~~~~~~~-~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 208 (526)
|.+.++++....|.. ..+..+ .. .+...|++++|.+.++++.+.. +.+..++..+...+...|
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhc
Confidence 666666655444322 222222 11 2444555555666555555432 223445555555555556
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHH
Q 009782 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRG 285 (526)
Q Consensus 209 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 285 (526)
++++|.+.++.+.+.. +.+..++..+...+...|++++|...|+++.+ .+..++..+...+...|++++|.+.+++
T Consensus 187 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 187 NYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6666666555555543 33344555555555555555555555554432 2334555555555555555555555555
Q ss_pred HHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCC-----------chhHHhHHHHHHHhcCChHHHHHHhccCC
Q 009782 286 MILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW-----------DLCIANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 286 m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
... ..... +...+..+..++.+.|++++|..++++..
T Consensus 266 a~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 266 AIY--------------------------------MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHH--------------------------------HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHH--------------------------------hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 544 22221 45677889999999999999999998765
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.9e-14 Score=141.72 Aligned_cols=391 Identities=9% Similarity=-0.037 Sum_probs=235.1
Q ss_pred CCCccccccCCCCchHHHHHHHHHHHHHHhhC-----C---CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhc----
Q 009782 54 PTPLLTNQKAFPKTKLQALDSIIQDLESSVQN-----G---ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL---- 121 (526)
Q Consensus 54 p~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~-----~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 121 (526)
.....|+.+...+...|++++|++.+++..+. + ......+|+.+..++...|++++|...++...+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34456777777777889999999999887542 1 12245678899999999999999999999876531
Q ss_pred ---cCCChhHHHHHHHHHHhc--CChhHHHHHHhccccCCCCc-ccHHHHHHH---HHhcCChHHHHHHHHHHHHcCCCC
Q 009782 122 ---LRKNKGISSKLLRLYATF--GLIDEAHQVFDQMSNRTAFA-FPWNSLISG---YAELGEYEDAIALYFQMEEEGVEP 192 (526)
Q Consensus 122 ---~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p 192 (526)
......++..+..++... +++++|++.|++....+|+. ..+..+..+ +...++.++|++.+++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 012345666666566554 46899999999988776643 444444444 345678889999999888753 23
Q ss_pred CcchHHHHHHHHh----ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcccHHH
Q 009782 193 DQFTFPRVLKACA----GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--K-DLISYNS 265 (526)
Q Consensus 193 ~~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 265 (526)
+..++..+...+. ..|+.++|.+.+++..... +.+..++..+...|...|++++|...|++..+ | +..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 3445555544443 4567889999999988875 55677889999999999999999999988764 3 3455666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHH
Q 009782 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345 (526)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (526)
+..+|...+.... ... ...........+..+.+...++...+... .+...+..+...|...|++++
T Consensus 287 lg~~y~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 287 IGCCYRAKVFQVM---------NLR----ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHHHHHH---------HC----------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhh---------hHH----HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHH
Confidence 6555533211111 000 00000111122445666677776666543 345566778888888888888
Q ss_pred HHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHHHHhcCC
Q 009782 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHL--TFVSLLS-ACAHLGSVKVGERLFSVMVEKYGI 422 (526)
Q Consensus 346 A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~ 422 (526)
|...|++.. +....|... .+..+.. .....|+.++|...+++..+ +
T Consensus 353 A~~~~~kaL----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i 401 (472)
T 4g1t_A 353 AEYYFQKEF----------------------------SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---I 401 (472)
T ss_dssp HHHHHHHHH----------------------------HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---S
T ss_pred HHHHHHHHH----------------------------hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---c
Confidence 888776533 211111111 1222222 23467899999999998875 4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHH
Q 009782 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (526)
.|+....... ...+.+++.+.+...|+ ..+|..++..|...|++++|++.|++++++.|.++.+...++
T Consensus 402 ~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 402 NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 5654332222 23445556566666774 588999999999999999999999999999988877665544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.7e-14 Score=129.41 Aligned_cols=109 Identities=7% Similarity=-0.070 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYAC 469 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 469 (526)
..+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.+.+.+...|+ ...+..+...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45666666777777777777777777654 2335666777777777777777777777666666664 46666677777
Q ss_pred HhcCChHHHHHHHHHHHccC------CCCcchHHHHHH
Q 009782 470 YLHGNVCMGETAAQKLFELE------PDNEHNFELLIK 501 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 501 (526)
...|++++|...+++++++. |.+..++..+..
T Consensus 218 ~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 77777777777777777766 665555544443
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=7e-14 Score=126.56 Aligned_cols=245 Identities=10% Similarity=0.005 Sum_probs=163.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcc----cHHHHHHHHHh
Q 009782 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLI----SYNSMLTGYIH 272 (526)
Q Consensus 199 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~ 272 (526)
.....+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++..+ ++.. +|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34444455555555555555555442 22333455555555556666666655554433 1222 36677777778
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhcc
Q 009782 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352 (526)
Q Consensus 273 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 352 (526)
.|++++|...|++..+.. +.+..++..+..+|...|++++|...|++
T Consensus 87 ~~~~~~A~~~~~~a~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD---------------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS---------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred cccHHHHHHHHHHHHhcC---------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888887776632 12345667888899999999999999988
Q ss_pred CCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009782 353 MPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432 (526)
Q Consensus 353 ~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (526)
..+.+ +.+...+..+...+...+++++|.+.++++.+. .+.+...+..+
T Consensus 134 al~~~-----------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~ 182 (272)
T 3u4t_A 134 QIRPT-----------------------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWR 182 (272)
T ss_dssp GCCSS-----------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HhhcC-----------------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHH
Confidence 76421 123445656662444456999999999999874 23357777888
Q ss_pred HHHHHhcCC---hHHHHHHHHhhcCC---CCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHH
Q 009782 433 VNLYGRAGL---IDEAYSMIVEKMEF---EASP------VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 433 ~~~~~~~g~---~~~A~~~~~~~~~~---~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (526)
...+...|+ +++|...+.+.+.. .|+. ..|..+...|...|++++|.+.++++++++|+++.++..+.
T Consensus 183 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 888888888 88888888666533 2542 57788889999999999999999999999999999888888
Q ss_pred HHHHhcCC
Q 009782 501 KIYGNAGR 508 (526)
Q Consensus 501 ~~~~~~g~ 508 (526)
......+.
T Consensus 263 ~~~~~~~~ 270 (272)
T 3u4t_A 263 MKLEHHHH 270 (272)
T ss_dssp --------
T ss_pred hhhccccc
Confidence 77665543
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=2.2e-13 Score=132.60 Aligned_cols=341 Identities=12% Similarity=0.008 Sum_probs=188.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCCh---hHHHHHHhccccCCCCcccHHHHHHHHHhcC
Q 009782 97 LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI---DEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173 (526)
Q Consensus 97 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 173 (526)
+...+.+.|++++|.++|+...+.| +...+..|...|...|+. ++|...|++..+. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCC
Confidence 4556677889999999999998876 334455566666777877 8999999988766 4477777777566655
Q ss_pred -----ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--
Q 009782 174 -----EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI---RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG-- 243 (526)
Q Consensus 174 -----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 243 (526)
++++|+..|++..+.|. ...+..+...|...+.. ..+.+.+......| +......+...|...+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 77899999999988663 33666677777655543 34555555555555 3455666777777777
Q ss_pred --CHHHHHHHHhhcCCCCcccHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHH
Q 009782 244 --DIVKARTVFDRIGNKDLISYNSMLTGYIHHG---LLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318 (526)
Q Consensus 244 --~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~ 318 (526)
+.+.+..+++.....+...+..|...|...| +.++|++.|++..+.|......
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~---------------------- 215 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQR---------------------- 215 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHH----------------------
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHH----------------------
Confidence 5666777778777777789999999999999 8999999999988876433221
Q ss_pred HHhCCCCchhHHhHHHHHHHhc----CChHHHHHHhccCCCCChhHHHHHHH------hcCCchHHHHHHHHHHHCCCCC
Q 009782 319 LRRGVEWDLCIANSLIVVYSKD----GKLDQACWLFDHMPQKDVVSWNSIIH------AHSKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~------~~~~~~~a~~~~~~m~~~~~~p 388 (526)
+..+...|... +++++|...|++....+...+..|-. ..++.++|..+|++..+.|
T Consensus 216 -----------~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 216 -----------VDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp -----------HHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred -----------HHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence 12233333222 45555555554433111111111110 1233444555555555544
Q ss_pred CHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHHhhcCCCCCH
Q 009782 389 DHLTFVSLLSACAHLG-----SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDEAYSMIVEKMEFEASP 459 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 459 (526)
+...+..|...|. .| ++++|.+.|++.. +-+...+..|...|.. ..++++|...|.+... ..++
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g~~ 354 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NGQN 354 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TTCT
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hChH
Confidence 3444555555554 34 6666666666553 2244555555555544 2366666666655443 2233
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHccCCC
Q 009782 460 VVWGALLYACYL----HGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 460 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 491 (526)
.....|...|.. ..|.++|...++++.+..+.
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 444445555543 34666666666666665543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.3e-14 Score=128.46 Aligned_cols=61 Identities=16% Similarity=0.023 Sum_probs=35.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
.|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|.+.++.+.+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 67 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 45555556666666666666666665554 45555555666666666666666666555543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=4.7e-14 Score=127.87 Aligned_cols=218 Identities=11% Similarity=-0.082 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhh
Q 009782 230 FVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306 (526)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 306 (526)
.++..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|...|++..+.. |
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~------------- 108 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--P------------- 108 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--c-------------
Confidence 3444444455555555555555544432 234455555566666666666666666655431 1
Q ss_pred hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 009782 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGV 386 (526)
Q Consensus 307 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~ 386 (526)
.+...+..+..+|...|++++|...|+++. + .
T Consensus 109 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----------------------------~--~ 140 (275)
T 1xnf_A 109 ------------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFY----------------------------Q--D 140 (275)
T ss_dssp ------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------H--H
T ss_pred ------------------cccHHHHHHHHHHHHhccHHHHHHHHHHHH----------------------------H--h
Confidence 123344555666666666666666555332 1 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-----HHH
Q 009782 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-----PVV 461 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~ 461 (526)
.|+.......+..+...|++++|...++..... .+++...+ .++..+...++.++|.+.+.+.+...|. ...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 141 DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 233333333334445668888888888877764 34444444 4667777888888899988777776663 477
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (526)
+..+...+...|++++|...++++++..|++.. ....++...|++++|.+.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 888889999999999999999999999987644 4467888899999988765
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=1.5e-14 Score=126.07 Aligned_cols=193 Identities=15% Similarity=0.049 Sum_probs=147.7
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHhccCCC--C-ChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCC-HHHHHHH
Q 009782 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--K-DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD-HLTFVSL 396 (526)
Q Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 396 (526)
+++...+..+...+.+.|++++|...|++..+ | +...+..+-.. .|+.++|...+++..+ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 34566777888888899999999999887764 3 33344333333 6888899999999888 3454 5688888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHH
Q 009782 397 LSACAHL-----------GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465 (526)
Q Consensus 397 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 465 (526)
...+... |++++|...+++..+. -+-+...+..+...|...|++++|+..|.+.+....++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8899999 9999999999999874 23367888999999999999999999998877655666889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
...+...|++++|+..+++++++.|+++.++..++.+|.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998764
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=4.2e-13 Score=121.60 Aligned_cols=221 Identities=11% Similarity=-0.021 Sum_probs=185.8
Q ss_pred CCCchHHHHHHHHHHHHHHhhCCCC---CChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC
Q 009782 64 FPKTKLQALDSIIQDLESSVQNGIT---VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140 (526)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 140 (526)
......+++++|+..++.+.+.... .+..++..+...+...|++++|.+.|+.+.+.. +.+..++..+...+...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 3455679999999999999987432 256778888899999999999999999999875 567889999999999999
Q ss_pred ChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH
Q 009782 141 LIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 219 (526)
++++|.+.|++....+|+ +.+|..+...+.+.|++++|...|+++.+. .|+.......+..+...|++++|...++.
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999998876553 478999999999999999999999999885 46666666666666788999999999988
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------cccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD-------LISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 220 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
..... +++...+. ++..+...++.++|...++.....+ ...|..+...|...|++++|...|++....
T Consensus 170 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 170 HFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 88764 44444444 7777888899999999999887643 467888999999999999999999999875
No 44
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=5.8e-14 Score=135.48 Aligned_cols=209 Identities=11% Similarity=-0.014 Sum_probs=145.4
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD-PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (526)
.++..+...|...|++++|...+++..+.... .+. .....++..+...|..
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR----------------------------LSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch----------------------------HHHHHHHHHHHHHHHH
Confidence 35566666777777777777777765542000 000 0123345667778888
Q ss_pred cCC-----------------hHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 009782 340 DGK-----------------LDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACA 401 (526)
Q Consensus 340 ~g~-----------------~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 401 (526)
.|+ +++|...+++ ++++.... +-.+ ...++..+...+.
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~---------------------al~~~~~~---~~~~~~~~~~~~la~~~~ 234 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQE---------------------NLKLMRDL---GDRGAQGRACGNLGNTYY 234 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHH---------------------HHHHHHHH---TCHHHHHHHHHHHHHHHH
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHH---------------------HHHHHHHc---CCHHHHHHHHHHHHHHHH
Confidence 888 6666665542 33333322 1112 2347788888899
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-------HHHHHHHHHHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-------PVVWGALLYACY 470 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~ 470 (526)
..|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+.+.+...|. ..++..+...+.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 235 LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999988764211112 237788899999999999999999766643332 367788888999
Q ss_pred hcCChHHHHHHHHHHHccCCC------CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 471 LHGNVCMGETAAQKLFELEPD------NEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
..|++++|...+++++++.+. ...++..++.+|...|++++|.+.+++..+
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999886433 234788899999999999999999998765
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=9.7e-14 Score=133.52 Aligned_cols=268 Identities=16% Similarity=0.035 Sum_probs=147.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C----CcccHHHH
Q 009782 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFD----GFVLNALVDMYAKCGDIVKARTVFDRIGN-----K----DLISYNSM 266 (526)
Q Consensus 200 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l 266 (526)
....+...|++++|...++.+.+.+. .+ ..++..+...|...|++++|...+++... . ...++..+
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33344444444444444444444321 11 12344444455555555555554443321 0 12355666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC---
Q 009782 267 LTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK--- 342 (526)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 342 (526)
...+...|++++|...+++..+... .++.. ....++..+...|...|+
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------~~~~~~~~l~~~~~~~g~~~~ 145 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKV----------------------------GEARALYNLGNVYHAKGKSFG 145 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------HHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhccccc----------------------------chHHHHHHHHHHHHHcCCccc
Confidence 7777777777777777776654210 00000 012345566777777777
Q ss_pred -----------------hHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 009782 343 -----------------LDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLG 404 (526)
Q Consensus 343 -----------------~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 404 (526)
+++|...+++. ..++... +..|. ..++..+...+...|
T Consensus 146 ~~~~~~~~~~~~~a~~~~~~A~~~~~~a---------------------l~~~~~~---~~~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 146 CPGPQDVGEFPEEVRDALQAAVDFYEEN---------------------LSLVTAL---GDRAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHH---------------------HHHHHHT---TCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHH---------------------HHHHHhc---cCcHHHHHHHHHHHHHHHHcc
Confidence 66666555432 2222211 11111 235666666777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC---C----HHHHHHHHHHHHhcC
Q 009782 405 SVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA---S----PVVWGALLYACYLHG 473 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g 473 (526)
++++|...++++.+...-.++ ...+..+...|...|++++|...+.+.+...| + ..++..+...+...|
T Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC
Confidence 777777777776643111111 23566677777777777777777755553222 1 245666677777777
Q ss_pred ChHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 474 NVCMGETAAQKLFELEPDN------EHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
++++|...+++++++.+.. ..++..++.+|...|++++|.+.+++..
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777653322 3456677777777777777777777654
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=8.8e-14 Score=129.92 Aligned_cols=132 Identities=12% Similarity=-0.010 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC---C----H
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA---S----P 459 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~ 459 (526)
.++..+...+...|++++|...++++.+...-.++ ...+..+...+...|++++|.+.+.+.+...+ + .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 46788888899999999999999988754111111 34778889999999999999999966663322 1 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDN------EHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.++..+...+...|++++|...+++++++.+.. ..++..++.+|.+.|++++|.+.+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 677888889999999999999999998865432 346888999999999999999999998764
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=1.6e-13 Score=119.37 Aligned_cols=195 Identities=17% Similarity=0.081 Sum_probs=141.0
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHH
Q 009782 88 TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLI 166 (526)
Q Consensus 88 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li 166 (526)
+++...+..+...+.+.|++++|...|+...+.. +.+...+..+...+.+.|++++|+..|++....+|+. ..|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3466677777778888888888888888888765 5667788888888888888888888888887766643 5677788
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 009782 167 SGYAEL-----------GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235 (526)
Q Consensus 167 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 235 (526)
..+... |++++|+..|++..+.. +-+...+..+..++...|++++|...+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 888888 88888888888887753 2244567777788888888888888888888877 677778888
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 009782 236 VDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGM 286 (526)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (526)
..+|...|++++|...|++..+ .+...+..+...+...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888888888887753 34567777888888888888888887764
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.4e-12 Score=116.33 Aligned_cols=161 Identities=14% Similarity=0.046 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc--chHHHHHHHH
Q 009782 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ--FTFPRVLKAC 204 (526)
Q Consensus 128 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~ 204 (526)
.+......+...|++++|+..|++....+|+. ..|..+...+...|++++|+..+++..+.+..|+. .+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34455666777788888888887776665543 46777777888888888888888887763322222 1267777778
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChHHHHH
Q 009782 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~ 281 (526)
...|++++|.+.++...+.. +.+..++..+...|...|++++|.+.|++..+. +...|..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877764 445567777888888888888888888777652 33445555523334447777777
Q ss_pred HHHHHHHc
Q 009782 282 IFRGMILN 289 (526)
Q Consensus 282 ~~~~m~~~ 289 (526)
.|++..+.
T Consensus 164 ~~~~a~~~ 171 (272)
T 3u4t_A 164 SFVKVLEL 171 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666553
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=1e-13 Score=133.32 Aligned_cols=295 Identities=13% Similarity=0.031 Sum_probs=183.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchhH
Q 009782 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ-----FTFPRVLKACAGLGLIRVGEKVHLDAVRF----GFG-FDGFV 231 (526)
Q Consensus 162 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~ 231 (526)
+......+...|++++|...|++..+.+ |+. ..+..+...+...|++++|...+++..+. +.. ....+
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344445555555666666555555532 221 24445555555566666666655554432 111 12334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCC--------------------hHHHHHH
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGL--------------------LVEAFDI 282 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 282 (526)
+..+...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 55566666666666666666655432 11 2356666667777777 6666666
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCC-CCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHH
Q 009782 283 FRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV-EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361 (526)
Q Consensus 283 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 361 (526)
+.+.... .. ..+. .....++..+...|...|++++|...+++..
T Consensus 170 ~~~al~~-------------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------- 214 (406)
T 3sf4_A 170 YEENLSL-------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL------- 214 (406)
T ss_dssp HHHHHHH-------------------------HH---HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH-------
T ss_pred HHHHHHH-------------------------HH---hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-------
Confidence 6554331 00 0000 0113456777888999999999988887433
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHH
Q 009782 362 NSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLY 436 (526)
Q Consensus 362 ~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 436 (526)
++... .+..+ ...++..+...+...|++++|...+++..+...-.++ ..++..+...|
T Consensus 215 --------------~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 277 (406)
T 3sf4_A 215 --------------LIAKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 277 (406)
T ss_dssp --------------HHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 22221 11111 1237788888899999999999999988753211111 56778889999
Q ss_pred HhcCChHHHHHHHHhhcCCCC---C----HHHHHHHHHHHHhcCChHHHHHHHHHHHccC------CCCcchHHHHHHHH
Q 009782 437 GRAGLIDEAYSMIVEKMEFEA---S----PVVWGALLYACYLHGNVCMGETAAQKLFELE------PDNEHNFELLIKIY 503 (526)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 503 (526)
...|++++|.+.+.+.+...+ + ..++..+...+...|++++|.+.+++++++. +....++..++.+|
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 999999999999966663321 1 3677888889999999999999999998853 22355688888999
Q ss_pred HhcCChH
Q 009782 504 GNAGRLD 510 (526)
Q Consensus 504 ~~~g~~~ 510 (526)
...|+..
T Consensus 358 ~~~g~~~ 364 (406)
T 3sf4_A 358 MVLGLSY 364 (406)
T ss_dssp HHHHTTS
T ss_pred HHhhHhH
Confidence 8888763
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=5e-13 Score=113.10 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=142.4
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLG 404 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 404 (526)
+..+|..+...|...|++++|+..|++.. + +.| +...+..+..++...|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al----------------------------~--~~p~~~~~~~~la~~~~~~~ 53 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVL----------------------------K--ADPNNVETLLKLGKTYMDIG 53 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------------H--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------H--hCCCCHHHHHHHHHHHHHCC
Confidence 45677888888988998888888877533 2 234 4568888999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQ 483 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 483 (526)
++++|...++.+... .+.+...+..+...+...++++.|.+.+.+.+...|+ ...+..+...+.+.|++++|++.++
T Consensus 54 ~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 54 LPNDAIESLKKFVVL--DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 999999999999874 3446777888889999999999999999888888885 4788889999999999999999999
Q ss_pred HHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
++++++|.++.+|..++.+|.+.|++++|.+.|++..+..
T Consensus 132 ~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 132 KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999987653
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=2.9e-13 Score=120.09 Aligned_cols=213 Identities=15% Similarity=0.069 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhh
Q 009782 230 FVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306 (526)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 306 (526)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...+++..+.. |
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~------------- 88 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD--S------------- 88 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-------------
Confidence 3444444455555555555555554432 233455555666666666666666666655431 1
Q ss_pred hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 009782 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGV 386 (526)
Q Consensus 307 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~ 386 (526)
.+...+..+...|...|++++|...++++. +. .
T Consensus 89 ------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----------------------------~~-~ 121 (243)
T 2q7f_A 89 ------------------SAATAYYGAGNVYVVKEMYKEAKDMFEKAL----------------------------RA-G 121 (243)
T ss_dssp ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------HH-T
T ss_pred ------------------cchHHHHHHHHHHHHhccHHHHHHHHHHHH----------------------------Hh-C
Confidence 123334455566666666666666555322 11 1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHH
Q 009782 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGAL 465 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 465 (526)
+.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.+.+.+...|+ ..++..+
T Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 199 (243)
T 2q7f_A 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 224556777777888888888888888888764 3346777888888899999999999999777776664 5778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
...+...|++++|...++++++..|+++.++..+.......
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 88999999999999999999999999888777666554433
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=2.3e-12 Score=115.01 Aligned_cols=197 Identities=13% Similarity=-0.013 Sum_probs=168.6
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGY 169 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~ 169 (526)
...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++....|. ...|..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4567778888889999999999999998875 557788999999999999999999999998766553 46788899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 248 (526)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998733344 44577888889999999999999999998875 45678888999999999999999
Q ss_pred HHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 249 RTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 249 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
...|+++.+ .+...+..+...+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999988765 34567888888999999999999999999875
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=1.2e-12 Score=116.90 Aligned_cols=195 Identities=9% Similarity=-0.049 Sum_probs=150.5
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 400 (526)
...+..+...+...|++++|...|+++.+ .+...+..+... .++.++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455666666777777777777666543 233333333332 466677777777776642 22567888888899
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 478 (526)
...|++++|.++++++.+. +..| +...+..+...|...|++++|.+.+.+.+...|+ ...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998762 3455 5677888889999999999999999888877774 57888888999999999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
...++++++..|++...+..++.+|...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999889999999999999999999999887654
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=6.4e-12 Score=113.69 Aligned_cols=127 Identities=12% Similarity=-0.061 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHHhhcCCCCCHHH
Q 009782 390 HLTFVSLLSACAH----LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDEAYSMIVEKMEFEASPVV 461 (526)
Q Consensus 390 ~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~ 461 (526)
...+..+...|.. .+++++|.+.+++..+. + +...+..+...|.. .+++++|.+.|.+.+.. .+...
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a 184 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPG 184 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHH
T ss_pred ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHH
Confidence 3344444444444 45555555555555443 2 33344444444544 55555555555444432 12344
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 009782 462 WGALLYACYL----HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN----AGRLDDVERVERMLVDRG 523 (526)
Q Consensus 462 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 523 (526)
+..+...|.. .+++++|+..++++.+..| +.++..++.+|.. .|++++|.+.+++..+.|
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4445555555 5555555555555555443 3345555555555 555555555555554433
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.7e-12 Score=122.42 Aligned_cols=131 Identities=10% Similarity=0.049 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-cCChHHH-----HHHHHhhcCCCCCH-HH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR-AGLIDEA-----YSMIVEKMEFEASP-VV 461 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~p~~-~~ 461 (526)
+...|..+..++...|++++|+..++++.+. -+-+...|+.+..+|.+ .|..++| ++.|.+++...|+. ..
T Consensus 199 ~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a 276 (382)
T 2h6f_A 199 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 276 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 3456666777777778888888888888764 23367777888888877 5555777 47777888888854 77
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC---------ChHHHHHHHHHH-HhC
Q 009782 462 WGALLYACYLHG--NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG---------RLDDVERVERML-VDR 522 (526)
Q Consensus 462 ~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m-~~~ 522 (526)
|..+...+...| ++++|++.++++ +..|+++.++..++.+|.+.| .+++|.++++++ .+.
T Consensus 277 ~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 277 WNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 888888888877 688899988888 888999999999999998874 258899999988 543
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=2.4e-12 Score=112.61 Aligned_cols=195 Identities=13% Similarity=0.008 Sum_probs=150.5
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 400 (526)
...+..+...+...|++++|...|+++.+ .+...+..+... .++.++|...+++..+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44555666666777777777776665543 223334333333 466677777777776632 23566888889999
Q ss_pred hcc-CCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHH
Q 009782 401 AHL-GSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 401 ~~~-~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 477 (526)
... |++++|...++.+.+. +..| +...+..+...+...|++++|.+.+.+.+...|+ ...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 999 9999999999999862 3444 4677888999999999999999999888877775 5788889999999999999
Q ss_pred HHHHHHHHHccCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 478 GETAAQKLFELEP-DNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 478 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|...++++++..| .+...+..++..+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999 888889889999999999999999999886543
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=4.6e-13 Score=118.80 Aligned_cols=195 Identities=9% Similarity=0.032 Sum_probs=146.1
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--C-ChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQ--K-DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
....+..+...+...|++++|...|+++.+ | +...+..+... .++.++|...+++..+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677777788888888877776654 2 33344433333 577788888888877742 2356788899999
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 478 (526)
+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.+.+.+...|+ ...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999875 3447788899999999999999999999888877774 58888999999999999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+..++++++..|.+..++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987654
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=3.3e-12 Score=121.84 Aligned_cols=234 Identities=12% Similarity=-0.023 Sum_probs=161.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCc-HHHHHHHHH
Q 009782 235 LVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGLLVEAFDIFRGMILNGF-DPD-PVAISSILA 303 (526)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~~ll~ 303 (526)
....+...|++++|...|++..+ ++ ..++..+...|...|++++|...+.+..+.-. .++ ..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 181 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI------- 181 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH-------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH-------
Confidence 55567788888888888877654 22 25678888888999999999988887765310 011 00
Q ss_pred HhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHH
Q 009782 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383 (526)
Q Consensus 304 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~ 383 (526)
....+++.+..+|...|++++|...|++. +++....
T Consensus 182 ---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------------l~~~~~~-- 217 (383)
T 3ulq_A 182 ---------------------RLLQCHSLFATNFLDLKQYEDAISHFQKA---------------------YSMAEAE-- 217 (383)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHT--
T ss_pred ---------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HHHHHHc--
Confidence 01345677888999999999999888743 2332221
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CC-CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC---
Q 009782 384 DGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKY---GI-SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--- 455 (526)
Q Consensus 384 ~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 455 (526)
+-.+ ...++..+...|...|++++|.+.+++..+.. +. +....++..+...|.+.|++++|.+.+.+.+..
T Consensus 218 -~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 218 -KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 1111 12367778888888999999998888877621 12 224667788888899999999999888766643
Q ss_pred --CCCH-HHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 456 --EASP-VVWGALLYACYLHGN---VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 456 --~p~~-~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.|.. ..+..+...+...|+ +++|+..+++. ...|....++..++.+|...|++++|.+.+++..+
T Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2222 335667777788888 77777777765 23344455678889999999999999998888754
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=7.4e-12 Score=109.44 Aligned_cols=198 Identities=11% Similarity=-0.060 Sum_probs=160.7
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISG 168 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~ 168 (526)
+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|++.....|+ ..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 56677788888889999999999999988865 556778888899999999999999999988766553 3678888889
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 009782 169 YAEL-GEYEDAIALYFQMEEEGVEPD-QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246 (526)
Q Consensus 169 ~~~~-~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 246 (526)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999887322333 4567788888889999999999999988775 445778888889999999999
Q ss_pred HHHHHHhhcCC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 247 KARTVFDRIGN----KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 247 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
+|...++++.+ .+...+..+...+...|+.+.|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999887653 45566777777888899999999988888754
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=1.4e-12 Score=125.71 Aligned_cols=274 Identities=11% Similarity=0.015 Sum_probs=164.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCchhHHHH
Q 009782 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQ-----FTFPRVLKACAGLGLIRVGEKVHLDAVRFG-----FGFDGFVLNA 234 (526)
Q Consensus 165 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~ 234 (526)
+...+...|++++|+..|++..+.+ |+. ..+..+...+...|++++|...+++..+.. .+.....+..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3334444455555555554444431 221 234444444445555555555554443321 0122344555
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---------CcccHHHHHHHHHhCCC-----------------hHHHHHHHHHHHH
Q 009782 235 LVDMYAKCGDIVKARTVFDRIGNK---------DLISYNSMLTGYIHHGL-----------------LVEAFDIFRGMIL 288 (526)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~ 288 (526)
+...|...|++++|...|++..+- ...++..+...|...|+ +++|.+.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 555666666666666655544320 12355666666777777 5666655555432
Q ss_pred cCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCC-CCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh
Q 009782 289 NGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV-EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367 (526)
Q Consensus 289 ~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 367 (526)
. ... .+. ......+..+...|...|++++|...+++..
T Consensus 212 ~-------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------- 250 (411)
T 4a1s_A 212 L-------------------------MRD---LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL------------- 250 (411)
T ss_dssp H-------------------------HHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred H-------------------------HHH---cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-------------
Confidence 1 000 000 0123456778889999999999999887433
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHhcCChH
Q 009782 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RVEHYACMVNLYGRAGLID 443 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~ 443 (526)
++..... .......++..+...+...|++++|...++++.+...-.. ....+..+...|...|+++
T Consensus 251 --------~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 251 --------RIAREFG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp --------HHHHHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --------HHHHhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 2222210 0001123778888899999999999999998876421111 2567788999999999999
Q ss_pred HHHHHHHhhcCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 444 EAYSMIVEKMEFEAS-------PVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 444 ~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
+|.+.+.+.+...++ ..++..+...+...|++++|.+.+++++++.+.
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999766643221 257788889999999999999999999887654
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.9e-12 Score=120.74 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=169.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHh----CC-CCchhHHH
Q 009782 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQ-----FTFPRVLKACAGLGLIRVGEKVHLDAVRF----GF-GFDGFVLN 233 (526)
Q Consensus 164 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~-~~~~~~~~ 233 (526)
.....+...|++++|...|++..+.. |+. ..+..+...+...|++++|.+.+++..+. +. +....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445555666666666666665542 222 34555555666666666666666655432 11 11234555
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCC--------------------hHHHHHHHH
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGL--------------------LVEAFDIFR 284 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~ 284 (526)
.+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666666666777776666655432 11 1255556666666666 555555555
Q ss_pred HHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCC-CCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHH
Q 009782 285 GMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV-EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363 (526)
Q Consensus 285 ~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 363 (526)
+.... . ...+. ......+..+...+...|++++|...+++..
T Consensus 168 ~a~~~-------------------------~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--------- 210 (338)
T 3ro2_A 168 ENLSL-------------------------V---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL--------- 210 (338)
T ss_dssp HHHHH-------------------------H---HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------
T ss_pred HHHHH-------------------------H---HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------
Confidence 44321 0 00010 1123456677888999999999998887432
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhc
Q 009782 364 IIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRA 439 (526)
Q Consensus 364 li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~ 439 (526)
++..... .......++..+...+...|++++|...+++..+...-.++ ..++..+...|...
T Consensus 211 ------------~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 211 ------------LIAKEFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp ------------HHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 2222210 00111337788888899999999999999988754211112 56778889999999
Q ss_pred CChHHHHHHHHhhcCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 440 GLIDEAYSMIVEKMEFEAS-------PVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 440 g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
|++++|...+.+.+...+. ..++..+...+...|++++|...+++++++.+.
T Consensus 277 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9999999999666643221 257788889999999999999999999987654
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=1.1e-11 Score=120.56 Aligned_cols=342 Identities=11% Similarity=-0.012 Sum_probs=227.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI---RVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 163 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 346677888999999999999998876 344555666777778888 8999999988854 445566666655
Q ss_pred HhcC-----CHHHHHHHHhhcCCC-CcccHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHH
Q 009782 240 AKCG-----DIVKARTVFDRIGNK-DLISYNSMLTGYIHHGLLV---EAFDIFRGMILNGFDPDPVAISSILANASLLRI 310 (526)
Q Consensus 240 ~~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 310 (526)
...| +.++|.+.|++..++ +...+..|...|...+..+ ++.+.+......|.......+..+...-+.++.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 5555 789999999887654 5568888888888876544 455566666666654444444444433344444
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHHHHHHhcC---ChHHHHHHhccCCC---CChhHHHHHHHhc-------CCchHHHHH
Q 009782 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDG---KLDQACWLFDHMPQ---KDVVSWNSIIHAH-------SKDHEALIY 377 (526)
Q Consensus 311 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~-------~~~~~a~~~ 377 (526)
+......+.+.....++..+..+...|...| +.++|+..|++..+ ++...+..+-..+ .+.++|..+
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 4443444444434445558888999999999 99999999987754 3333323333332 456899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-----ChHHHHHHH
Q 009782 378 FEQMERDGVLPDHLTFVSLLSA-C--AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG-----LIDEAYSMI 449 (526)
Q Consensus 378 ~~~m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~ 449 (526)
|++.. .| +...+..|... + ...++.++|.+.|++..+. | +...+..|...|. .| ++++|.+.|
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99987 33 34455555555 3 5689999999999999875 4 6677778888887 55 999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHh
Q 009782 450 VEKMEFEASPVVWGALLYACYL----HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN----AGRLDDVERVERMLVD 521 (526)
Q Consensus 450 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 521 (526)
.++. ..++..+..|...|.. ..+.++|...|+++.+. .++.+...|+.+|.. ..+.++|...+++..+
T Consensus 311 ~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 311 EKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7777 5566788888877776 34999999999998875 456678999999986 5589999999999988
Q ss_pred CCC
Q 009782 522 RGL 524 (526)
Q Consensus 522 ~g~ 524 (526)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 874
No 63
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=8.3e-12 Score=117.71 Aligned_cols=127 Identities=9% Similarity=-0.092 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDM 238 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 238 (526)
..|+.+...+.+.|++++|++.+++..+.. +-+...|+.+..++...|+ +++|+..++++++.. +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 446666666666677777777777666542 2233455666666666664 666666666666654 3345555555555
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 239 YAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+...|++++|+..|+++.+ .+...|..+..++.+.|++++|+..++++++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5555555555555554432 2334555555555555566666666655554
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=1.3e-09 Score=109.74 Aligned_cols=414 Identities=10% Similarity=0.034 Sum_probs=238.6
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCC---hhHHHHHHhc
Q 009782 75 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL---IDEAHQVFDQ 151 (526)
Q Consensus 75 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~ 151 (526)
.+..++..+...+ -|...|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.|. ++.+..+|++
T Consensus 51 ~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444455555554 39999999999999999999999999999987 47788899999999888888 9999999999
Q ss_pred cccCC---CCcccHHHHHHHHHhcCCh--------HHHHHHHHHHHH-cCC-CCCc-chHHHHHHHHh---------ccC
Q 009782 152 MSNRT---AFAFPWNSLISGYAELGEY--------EDAIALYFQMEE-EGV-EPDQ-FTFPRVLKACA---------GLG 208 (526)
Q Consensus 152 ~~~~~---~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~t~~~ll~~~~---------~~g 208 (526)
..... +++..|...+....+.++. +...++|+.... .|. .|+. ..|...+.... ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 88776 6667788877766665554 334477776554 365 5544 45666665433 234
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHH---HHHHHH----------hcCCHHHHHHHHhhc-------CC--CC-------
Q 009782 209 LIRVGEKVHLDAVRFGFGFDGFVLNA---LVDMYA----------KCGDIVKARTVFDRI-------GN--KD------- 259 (526)
Q Consensus 209 ~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~~~----------~~g~~~~A~~~~~~~-------~~--~~------- 259 (526)
+++.+.++|+.++......-..+|.. +...+. ...+++.|...+.++ .+ |.
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 56788889988875322212233322 211110 011233344444331 11 00
Q ss_pred -------------cccHHHHHHHHHhCC-------ChHHHHHHHHHHHHcC-CCCcH-HHHHHHHHHhhhhHHHH-HHHH
Q 009782 260 -------------LISYNSMLTGYIHHG-------LLVEAFDIFRGMILNG-FDPDP-VAISSILANASLLRIGA-QVHG 316 (526)
Q Consensus 260 -------------~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~-~~p~~-~~~~~ll~~~~~~~~a~-~~~~ 316 (526)
...|...+..--..+ ..+.+..+|++.+... ..|+. ..|..++...|+.+.|. .+++
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 012333333222221 0122344566555531 11111 12233333336666775 7777
Q ss_pred HHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-------------CC------------hhHHHHHHHh---c
Q 009782 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-------------KD------------VVSWNSIIHA---H 368 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~---~ 368 (526)
..... .+.+...+-..+....+.|++++|..+|+.+.+ |+ ...|...+.. .
T Consensus 369 rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 369 LGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 77653 344566666777777778888888888776653 11 1123333332 3
Q ss_pred CCchHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH
Q 009782 369 SKDHEALIYFEQMERD-G-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 446 (526)
+..+.|..+|.+..+. + ..+......+.+.-.+ .++.+.|..+|+...+. ++-+...+...++.....|+.+.|.
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 4456677777776654 1 1122222222222111 24467777777777664 2234445556666666667777777
Q ss_pred HHHHhhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 447 SMIVEKMEFEAS----PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 447 ~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
.+|++++...|+ ...|...+..-.+.|+.+.+.++.+++.+..|+++.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 777666665552 255666666666677777777777777777766543
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1e-12 Score=128.64 Aligned_cols=190 Identities=11% Similarity=0.006 Sum_probs=152.5
Q ss_pred chhHHhHHHHHHHhcCCh-HHHHHHhccCCC--C-ChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKL-DQACWLFDHMPQ--K-DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 398 (526)
+...+..+..+|...|++ ++|++.|++..+ | +...|..+-.. .|++++|...|++..+ ..|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 445555666666666666 666666665543 2 23344433333 4666677777777776 4677788999999
Q ss_pred HHhcc---------CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc--------CChHHHHHHHHhhcCCCC----
Q 009782 399 ACAHL---------GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA--------GLIDEAYSMIVEKMEFEA---- 457 (526)
Q Consensus 399 ~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p---- 457 (526)
.+... |++++|.+.++++.+. .+.+...|..+..+|... |++++|++.|.+++...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 99999 9999999999999875 334688899999999998 999999999988888888
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
+...|..+...|...|++++|++.+++++++.|++..++..+..++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55889999999999999999999999999999999999999999999999999999765543
No 66
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=4.9e-11 Score=107.86 Aligned_cols=191 Identities=15% Similarity=0.068 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh----cCChhHHHHHHhccccCCCCcccHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT----FGLIDEAHQVFDQMSNRTAFAFPWNSL 165 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l 165 (526)
++.++..+-..+...|++++|.+.|+...+. .+...+..+...|.. .+++++|...|++..+.+ ++.++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 4556666677777778888888888877773 345667777777777 788888888888776554 34667777
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 009782 166 ISGYAE----LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG----LGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237 (526)
Q Consensus 166 i~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 237 (526)
...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 777777 788888888888877754 55667777777777 788888888888877765 4556666777
Q ss_pred HHHh----cCCHHHHHHHHhhcCC-CCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 009782 238 MYAK----CGDIVKARTVFDRIGN-KDLISYNSMLTGYIH----HGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 238 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 290 (526)
.|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 7776 7788888888776654 345566777777777 778888888887777653
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.1e-11 Score=114.35 Aligned_cols=236 Identities=14% Similarity=0.100 Sum_probs=129.9
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (526)
.++..+...+...|++++|..+++++.+.. ........+.....+..+...|...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------------------------~~~~~~~~~~~~~~~~~la~~~~~~ 82 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDL-------------------------EKTSGHDHPDVATMLNILALVYRDQ 82 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------HHHHCSSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------HHHcCCCCHHHHHHHHHHHHHHHHC
Confidence 466777788888888888888888776520 0000000111234567788889999
Q ss_pred CChHHHHHHhccCCC-------C-C---hhHHHHHHHh---cCCchHHHHHHHHHHHC------CCCCC-HHHHHHHHHH
Q 009782 341 GKLDQACWLFDHMPQ-------K-D---VVSWNSIIHA---HSKDHEALIYFEQMERD------GVLPD-HLTFVSLLSA 399 (526)
Q Consensus 341 g~~~~A~~~~~~~~~-------~-~---~~~~~~li~~---~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~ll~~ 399 (526)
|++++|...+++..+ + + ...+..+... .+++++|...+++..+. +-.|+ ...+..+...
T Consensus 83 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999999988876542 0 1 1122222222 35556666666665542 12222 2345556666
Q ss_pred HhccCCHHHHHHHHHHHHHhc-----CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCC---------CCCH-----
Q 009782 400 CAHLGSVKVGERLFSVMVEKY-----GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---------EASP----- 459 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p~~----- 459 (526)
+...|++++|.++++++.+.. +..| ....+..+...|...|++++|.+.+.+.+.. .+..
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 666666666666666665421 0012 2345556666666666666666666444421 1111
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 460 --VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 460 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
..+..+...+...+.+.++...++.+....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11122222233344445555555555556677788899999999999999999999998865
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=3.5e-12 Score=129.92 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=144.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLG 404 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 404 (526)
+...++.+..+|.+.|++++|++.|++.. + +.|+ ...+..+..++.+.|
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl----------------------------~--l~P~~~~a~~nLg~~l~~~g 57 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKAL----------------------------E--VFPEFAAAHSNLASVLQQQG 57 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------H--HCSCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------H--hCCCCHHHHHHHHHHHHHcC
Confidence 35677888888888888888888777433 2 3454 568899999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 009782 405 SVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAA 482 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 482 (526)
++++|++.|+++.+. .| +...|..+..+|.+.|++++|++.|.+++..+|+. ..|..+...+...|++++|++.|
T Consensus 58 ~~~eA~~~~~~Al~l---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 58 KLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999874 45 58899999999999999999999999999999964 89999999999999999999999
Q ss_pred HHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+++++++|+++.++..++.+|...|++++|.+.++++.+
T Consensus 135 ~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=3.7e-11 Score=101.29 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=137.3
Q ss_pred hHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 009782 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407 (526)
Q Consensus 328 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 407 (526)
..+..+...+...|++++|...++++.+.+ +.+...+..+...+...|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 59 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----------------------------AFDVDVALHLGIAYVKTGAVD 59 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----------------------------SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------------ccChHHHHHHHHHHHHcCCHH
Confidence 455677888999999999999999877421 224567788888888999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
+|...++++.+. .+.+...+..+...+...|++++|.+.+.+.+...| +...+..+...+...|++++|...+++++
T Consensus 60 ~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 60 RGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 999999998874 344677888889999999999999999977777666 45778888889999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 487 ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 487 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+..|.++.++..++.+|...|++++|.+.++++.+
T Consensus 138 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 138 GLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988765
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=1.3e-11 Score=120.79 Aligned_cols=211 Identities=9% Similarity=-0.054 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCCh-HHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 009782 70 QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAV-EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148 (526)
Q Consensus 70 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 148 (526)
+.+++++..++....... .+...+..+..++...|++ ++|.+.|+...+.. +.+...+..+...|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 335555555555443322 2455555555666666666 66666666666543 33455666666666666666666666
Q ss_pred HhccccCCCCcccHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc--------CChH
Q 009782 149 FDQMSNRTAFAFPWNSLISGYAEL---------GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL--------GLIR 211 (526)
Q Consensus 149 ~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--------g~~~ 211 (526)
|++....+|+...|..+...+... |++++|+..|++..+.. +-+...|..+..++... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 666655555545555556666665 66666666666665542 22344555555555555 5666
Q ss_pred HHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHH
Q 009782 212 VGEKVHLDAVRFGFG--FDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIF 283 (526)
Q Consensus 212 ~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 283 (526)
+|.+.|++..+.... .+...|..+..+|...|++++|.+.|++..+ .+...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666554310 3455556666666666666666666655432 23344555555555555555555544
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=2.8e-09 Score=107.32 Aligned_cols=413 Identities=9% Similarity=-0.017 Sum_probs=276.9
Q ss_pred hHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCC---hHHHHHHH
Q 009782 107 VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGE---YEDAIALY 182 (526)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~---~~~a~~~~ 182 (526)
..+....++..+... +.|...|..++..+.+.+.++.+..+|+++...-|.. ..|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455556666555 6799999999999999999999999999998876643 568888888888888 99999999
Q ss_pred HHHHHcC-CCCCcchHHHHHHHHhccCCh--------HHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHH---------h
Q 009782 183 FQMEEEG-VEPDQFTFPRVLKACAGLGLI--------RVGEKVHLDAVR-FGF-GFD-GFVLNALVDMYA---------K 241 (526)
Q Consensus 183 ~~m~~~~-~~p~~~t~~~ll~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~---------~ 241 (526)
++..... ..|+...|..-+....+.++. +.+.++|+.... .|. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998753 137877777777655554443 344577776654 466 554 467777776543 2
Q ss_pred cCCHHHHHHHHhhcCC-CCc---ccHH---HHHHHH----------HhCCChHHHHHHHHHHHHc--CCC----------
Q 009782 242 CGDIVKARTVFDRIGN-KDL---ISYN---SMLTGY----------IHHGLLVEAFDIFRGMILN--GFD---------- 292 (526)
Q Consensus 242 ~g~~~~A~~~~~~~~~-~~~---~~~~---~li~~~----------~~~g~~~~a~~~~~~m~~~--~~~---------- 292 (526)
.++++.+.++|++... |.. .+|. .+...+ -...+++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3457889999988875 211 1222 111111 0012334455555544321 221
Q ss_pred -----C-----cHH---HHHHHHHHh-h---------hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH-H
Q 009782 293 -----P-----DPV---AISSILANA-S---------LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC-W 348 (526)
Q Consensus 293 -----p-----~~~---~~~~ll~~~-~---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~ 348 (526)
| +.. .|...+.-- . ..+.+..++++.+..- +....+|-..+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 111 122222111 1 1234556777777653 447788888888899999999996 9
Q ss_pred HhccCCC--CCh-hHHH---HHHHhcCCchHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHh
Q 009782 349 LFDHMPQ--KDV-VSWN---SIIHAHSKDHEALIYFEQMERDG---------VLPD------------HLTFVSLLSACA 401 (526)
Q Consensus 349 ~~~~~~~--~~~-~~~~---~li~~~~~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~ll~~~~ 401 (526)
+|+.... |.. ..|- .+....++.++|.++|+.+.... -.|+ ...|...++...
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9987764 433 2232 23333788999999999987631 0142 236888888888
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc-CChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA-GLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 479 (526)
+.|+.+.|..+|..+.+. .-.+....|...+..-.+. ++.+.|..+|.+.+...|+ ...|...+......|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 889999999999999864 0111233443333333344 4589999999888877774 466678888888899999999
Q ss_pred HHHHHHHccCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 480 TAAQKLFELEPD---NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 480 ~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.+|++++...|+ ....|..++..-.+.|+.+.+.++.+++.+.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999998873 4566888888888999999999999999764
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=4.5e-12 Score=116.90 Aligned_cols=257 Identities=14% Similarity=0.075 Sum_probs=142.2
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEE-------GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 232 (526)
.++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...++++.+..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 99 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------- 99 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------
Confidence 44666666666667777777666666542 111122344445555555555555555555444321
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhc--C--CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhh
Q 009782 233 NALVDMYAKCGDIVKARTVFDRI--G--NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308 (526)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 308 (526)
+.. . .....++..+...|...|++++|...+++..+..
T Consensus 100 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------------ 141 (311)
T 3nf1_A 100 --------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------------------ 141 (311)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH------------------
T ss_pred --------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH------------------
Confidence 000 0 0012345566666677777777777776655420
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 009782 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p 388 (526)
........+.....+..+...|...|++++|...++++. ++++.... +..|
T Consensus 142 -------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~---------------------~~~~~~~~-~~~~ 192 (311)
T 3nf1_A 142 -------EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL---------------------EIYQTKLG-PDDP 192 (311)
T ss_dssp -------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH---------------------HHHHHTSC-TTCH
T ss_pred -------HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------HHHHHHhC-CCCH
Confidence 000000001123456678888999999999998887432 22222110 1123
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc------CCCCc-------hhHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 389 D-HLTFVSLLSACAHLGSVKVGERLFSVMVEKY------GISPR-------VEHYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 389 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
+ ..++..+...+...|++++|.+.++++.+.. ...+. ...+..+...+...+.+.+|...+.+...
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 2 3478888999999999999999999988631 11111 12223333344455666667777755555
Q ss_pred CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 455 FEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 455 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
..|+. .++..+...|...|++++|.+.+++++++.|.
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 56644 78899999999999999999999999987764
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=1.3e-10 Score=107.12 Aligned_cols=214 Identities=8% Similarity=0.020 Sum_probs=163.8
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHH-------ccCCh-------HHHHHHHHHHhhhccCCChhHHHHHHHHHHh
Q 009782 73 DSIIQDLESSVQNGITVQTETFASLLETCY-------QLKAV-------EHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138 (526)
Q Consensus 73 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 138 (526)
++|+..+++.....+. ++..|......+. +.|++ ++|..+|+...+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6888888888876433 6777777777665 35776 8899999998883225566788999999999
Q ss_pred cCChhHHHHHHhccccCCCCc-c-cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH-hccCChHHHHH
Q 009782 139 FGLIDEAHQVFDQMSNRTAFA-F-PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC-AGLGLIRVGEK 215 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~~-~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~g~~~~a~~ 215 (526)
.|++++|..+|++.....|.. . .|..+...+.+.|++++|..+|++..+.. +++...|....... ...|+.+.|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988776643 3 78888999999999999999999988753 23334444333222 23689999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-------DLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+|+...+.. +.+...|..++..+.+.|++++|..+|++.... ....|..++..+.+.|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999888764 446778888888888899999999999877541 234678888888888999999988888876
Q ss_pred c
Q 009782 289 N 289 (526)
Q Consensus 289 ~ 289 (526)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 5
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=6.5e-11 Score=112.85 Aligned_cols=235 Identities=11% Similarity=0.012 Sum_probs=155.2
Q ss_pred HHHhccCChHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-----cccHHHH
Q 009782 202 KACAGLGLIRVGEKVHLDAVRF----GFGF-DGFVLNALVDMYAKCGDIVKARTVFDRIGN-----KD-----LISYNSM 266 (526)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 266 (526)
..+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344555566665555555442 1011 224555566666666666666666554432 11 2467777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHH
Q 009782 267 LTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345 (526)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (526)
...|...|++++|...+++..+... .++... ...++..+..+|...|++++
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------------~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL----------------------------MGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH----------------------------HHHHHHHHHHHHHHCCCHHH
Confidence 7888888888888888887765310 011111 12355678889999999999
Q ss_pred HHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC---
Q 009782 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYG--- 421 (526)
Q Consensus 346 A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 421 (526)
|...+++ |+++.+ ..+..|+ ..++..+...+...|++++|...+++..+...
T Consensus 243 A~~~~~~---------------------al~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 243 AIPYFKR---------------------AIAVFE---ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp HHHHHHH---------------------HHHHHH---HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH---------------------HHHHHH---hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 9988874 333322 2223233 45788899999999999999999998876411
Q ss_pred CCCchhHHHHHHHHHHhcCC---hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 422 ISPRVEHYACMVNLYGRAGL---IDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 422 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
-+.....+..+...|...|+ +++|+.++ +..+..|+. ..+..+...|...|++++|...+++++++.
T Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 299 DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL-ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11123345778888999999 89999999 555555544 677888999999999999999999998743
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=1.1e-09 Score=103.95 Aligned_cols=206 Identities=15% Similarity=0.078 Sum_probs=121.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC--C-chhHHhHHHHHHHh
Q 009782 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE--W-DLCIANSLIVVYSK 339 (526)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~ 339 (526)
+..+...+...|++++|...+++..... ...+.. | ....+..+...+..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLI----------------------------NEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH----------------------------HHhccccCcHHHHHHHHHHHHHHH
Confidence 4556667777888888888777765421 001111 1 12344567778888
Q ss_pred cCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
.|++++|...+++..+ +. ...|......++..+...+...|++++|...+++....
T Consensus 148 ~g~~~~A~~~~~~al~---------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 148 WARLDEAEASARSGIE---------------------VL---SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp TTCHHHHHHHHHHHHH---------------------HT---TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH---------------------Hh---hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999988888775331 00 00111112345666677777778888888877777653
Q ss_pred cCCCCchhHHH-----HHHHHHHhcCChHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 420 YGISPRVEHYA-----CMVNLYGRAGLIDEAYSMIVEKMEFEAS-----PVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 420 ~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
..-......+. ..+..+...|++++|...+.+.....|. ...+..+...+...|++++|...++++.+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 283 (373)
T 1hz4_A 204 LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA 283 (373)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11111111111 2234466778888888877666554432 1244566667777788888888877776643
Q ss_pred CC-----C-cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 490 PD-----N-EHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 490 p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+. + ..++..++.+|...|++++|.+.+++..
T Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 284 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 21 1 1245666777778888888877777654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=9.2e-11 Score=111.54 Aligned_cols=235 Identities=9% Similarity=-0.030 Sum_probs=160.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCc-HHHHHHHH
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGLLVEAFDIFRGMILNGF-DPD-PVAISSIL 302 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~~ll 302 (526)
.....+...|++++|...|++..+ ++ ..++..+...|...|+++.|...+.+..+... .++ ..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI------ 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh------
Confidence 344556678888888888876653 22 24677788888889999999888887765310 010 00
Q ss_pred HHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHH
Q 009782 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382 (526)
Q Consensus 303 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~ 382 (526)
....+++.+..+|...|++++|...|++. +++.+..
T Consensus 180 ----------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~a---------------------l~~~~~~- 215 (378)
T 3q15_A 180 ----------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAA---------------------LELAMDI- 215 (378)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHT-
T ss_pred ----------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------------HHHHHHc-
Confidence 01345677888999999999999888743 3333221
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC---
Q 009782 383 RDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKY---GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--- 455 (526)
Q Consensus 383 ~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 455 (526)
+-.+ ...++..+...+...|++++|.+.+++..+.. +.+....++..+...|.+.|++++|.+.+.+.+..
T Consensus 216 --~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 216 --QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred --CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 1111 23467788888889999999999998887621 12223667788888999999999999999666632
Q ss_pred --CCCH-HHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 456 --EASP-VVWGALLYACYLHGN---VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 456 --~p~~-~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.|.. ..+..+...+...|+ +.+|+..+++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2222 445555566667777 77777777762 22233445677899999999999999999888754
No 77
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=1.2e-10 Score=98.30 Aligned_cols=161 Identities=16% Similarity=0.087 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 009782 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204 (526)
Q Consensus 126 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 204 (526)
..+|..+...|...|++++|++.|++..+.+|+ +.+|..+...+.+.|++++|+..+....... +-+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 344555555555555555555555555444432 2445555555555555555555555554432 12233444444455
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHH
Q 009782 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 281 (526)
...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|.+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555555555443 33444555555666666666666666655432 234456666666666666666666
Q ss_pred HHHHHHH
Q 009782 282 IFRGMIL 288 (526)
Q Consensus 282 ~~~~m~~ 288 (526)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666655
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=5.1e-10 Score=106.38 Aligned_cols=232 Identities=9% Similarity=-0.087 Sum_probs=153.8
Q ss_pred HhccCChHHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-----cccHHHHHH
Q 009782 204 CAGLGLIRVGEKVHLDAVRFGF-GF----DGFVLNALVDMYAKCGDIVKARTVFDRIGN-----KD-----LISYNSMLT 268 (526)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 268 (526)
+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+++..+ ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4455666666666665554311 01 123555666666666766666666654432 11 235677788
Q ss_pred HHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH
Q 009782 269 GYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347 (526)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 347 (526)
.|...|++++|.+.+++..+..- .++... ...++..+..+|...|++++|.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~----------------------------~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRF----------------------------IAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------------------------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHH----------------------------HHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888877665210 011110 1235567888999999999999
Q ss_pred HHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---
Q 009782 348 WLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP--- 424 (526)
Q Consensus 348 ~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--- 424 (526)
..+++ |+++++.. +.+....++..+...+.+.|++++|...+++..+...-.+
T Consensus 243 ~~~~~---------------------al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 243 EHFQK---------------------AAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHH---------------------HHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHH---------------------HHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 98874 33333332 2222356788899999999999999999999987522211
Q ss_pred chhHHHHHHHHHHhcCC---hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 425 RVEHYACMVNLYGRAGL---IDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
....+..+...|...|+ +.+|+..+ +..+..|+. ..+..+...|...|++++|...++++++.
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYF-EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23456667777778888 89999998 555544544 66778889999999999999999998764
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=6.4e-11 Score=107.39 Aligned_cols=197 Identities=16% Similarity=0.154 Sum_probs=97.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCC--------C---hhHHHHHHHh---cCCchHHHHHHHHHHHC------C
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQK--------D---VVSWNSIIHA---HSKDHEALIYFEQMERD------G 385 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~---~~~~~~a~~~~~~m~~~------~ 385 (526)
...++..+..+|...|++++|...++++.+. + ..++..+... .++.++|...+++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4566788899999999999999988765420 0 1112222211 34445555555554432 0
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc-----CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCC---
Q 009782 386 VLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKY-----GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--- 455 (526)
Q Consensus 386 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 455 (526)
-.|+ ..++..+...+...|++++|..+++++.+.. +..| ...++..+...|...|++++|.+.+.+.+..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0121 2344445555555555555555555544320 0011 2334444555555555555555555333311
Q ss_pred ------CCCH-HHHHHHHHHHHhcCC------hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 456 ------EASP-VVWGALLYACYLHGN------VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 456 ------~p~~-~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.+.. ..+..+...+...+. +..+...++......|....++..++.+|...|++++|.+++++..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1211 222222222222111 111111111111123445567889999999999999999999998764
No 80
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=5.1e-10 Score=103.00 Aligned_cols=164 Identities=8% Similarity=0.058 Sum_probs=92.6
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCC--CC-hh-HHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQ--KD-VV-SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
...|..++..+.+.|++++|..+|+++.+ |+ .. .|..+... .|+.++|..+|++..+.+ +++...|......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34455556666666666666666655443 21 11 23322222 344455555555555432 1223333332222
Q ss_pred H-hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC---CCC--HHHHHHHHHHHHhcC
Q 009782 400 C-AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---EAS--PVVWGALLYACYLHG 473 (526)
Q Consensus 400 ~-~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~--~~~~~~l~~~~~~~g 473 (526)
. ...|+.++|..+|+.+.+. .+-+...|..++..+.+.|++++|..+|.+.+.. .|+ ...|..++....+.|
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 1257777777777777664 2235666677777777777777777777666653 332 356666677777777
Q ss_pred ChHHHHHHHHHHHccCCCCc
Q 009782 474 NVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~ 493 (526)
+.+.|..+++++++..|++.
T Consensus 256 ~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 256 DLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHHccccc
Confidence 77777777777777777644
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=2.2e-10 Score=100.46 Aligned_cols=168 Identities=11% Similarity=-0.015 Sum_probs=105.7
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 405 (526)
++..+......+...|++++|...|++.. +....++...+..+..++...|+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 57 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYL----------------------------KLTNNQDSVTAYNCGVCADNIKK 57 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------HHTTTCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHH----------------------------hccCCCCcHHHHHHHHHHHHhhc
Confidence 44566667777888888888777776543 22112444555556666666666
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--------HHHHHHHHHHHhcCChHH
Q 009782 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--------VVWGALLYACYLHGNVCM 477 (526)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~ 477 (526)
+++|.+.+++..+. .+.+...+..+...|...|++++|++.+.+.+...|+. ..|..+...+...|++++
T Consensus 58 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 58 YKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp HHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence 66666666666542 22245556666666666666666666666666555532 235555556666666666
Q ss_pred HHHHHHHHHccCCC--CcchHHHHHHHHHhcCCh---------------------------HHHHHHHHHHHhCC
Q 009782 478 GETAAQKLFELEPD--NEHNFELLIKIYGNAGRL---------------------------DDVERVERMLVDRG 523 (526)
Q Consensus 478 a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~---------------------------~~A~~~~~~m~~~g 523 (526)
|++.+++++++.|+ ++.++..++.+|...|+. ++|...+++..+..
T Consensus 136 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 136 AEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 66666666666666 666666666666666665 88999998887644
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=4.2e-10 Score=102.64 Aligned_cols=214 Identities=12% Similarity=0.000 Sum_probs=140.3
Q ss_pred CHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCC
Q 009782 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323 (526)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~ 323 (526)
++++|...|++. ...|...|++++|...|.+..+.. .+.+.
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~ 72 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQ----------------------------KKAGN 72 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHH----------------------------HHTTC
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHH----------------------------HHhCC
Confidence 367777666553 456677788888888777665420 00010
Q ss_pred CC-chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 009782 324 EW-DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACA 401 (526)
Q Consensus 324 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 401 (526)
.+ ...+++.+..+|.+.|++++|+..|++. ++++.+. |-.. -..++..+...|.
T Consensus 73 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A---------------------l~l~~~~---g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENA---------------------IQIFTHR---GQFRRGANFKFELGEILE 128 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------HHHHHHc---CCHHHHHHHHHHHHHHHH
Confidence 01 1345677888888999999988888743 3333221 1111 1346777888888
Q ss_pred cc-CCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHH--------HHHHHHHH
Q 009782 402 HL-GSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV--------VWGALLYA 468 (526)
Q Consensus 402 ~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--------~~~~l~~~ 468 (526)
.. |++++|...+++..+...-..+ ..++..+...|.+.|++++|+..|.+.+...|+.. .+..+..+
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 85 9999999999988764211111 35678888899999999999999977776666431 46777788
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcch-----HHHHHHHHH--hcCChHHHHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHN-----FELLIKIYG--NAGRLDDVERVERMLV 520 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~ 520 (526)
+...|++++|+..+++++++.|....+ +..++.+|. ..+++++|.+.|+++.
T Consensus 209 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888999999999999999988875543 344566665 4567888888886653
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=6.1e-10 Score=97.54 Aligned_cols=101 Identities=6% Similarity=0.093 Sum_probs=53.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPR---VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYA 468 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 468 (526)
|..+...+...|++++|.+.++++.+ +.|+ ...+..+...|...|+. .+.+.....+ +...+....
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-- 189 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK-- 189 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--
Confidence 44455555555666666666665553 2333 34444555555443322 1111111111 122222211
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
....+.+++|+..+++++++.|+++.+...+..+.
T Consensus 190 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 190 AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 22334459999999999999999988777776654
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=1.4e-09 Score=91.52 Aligned_cols=161 Identities=12% Similarity=-0.017 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHh
Q 009782 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205 (526)
Q Consensus 127 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 205 (526)
..+..+...+...|++++|...|+++....|. ...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44556666777777777777777777666543 3556777777777788888888877776652 334556667777777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHH
Q 009782 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDI 282 (526)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 282 (526)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888887777664 44566777777777888888888887776643 3456777777888888888888888
Q ss_pred HHHHHHc
Q 009782 283 FRGMILN 289 (526)
Q Consensus 283 ~~~m~~~ 289 (526)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8777653
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=4.6e-10 Score=88.84 Aligned_cols=131 Identities=20% Similarity=0.220 Sum_probs=115.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 470 (526)
.+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...+.+.+...|+ ...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788889999999999999999875 2346778888999999999999999999777776664 577888899999
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
..|++++|.+.++++++..|.+..++..++.+|...|++++|.+.++++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999876543
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=2.7e-10 Score=116.13 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=123.2
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHH
Q 009782 387 LPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWG 463 (526)
Q Consensus 387 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~ 463 (526)
.|+ ...|+.|...+.+.|++++|++.|+++.+. .| +...|..+..+|.+.|++++|++.|.+++...|+. ..|.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 455 458999999999999999999999999974 45 58899999999999999999999999999999964 8999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+..++...|++++|++.|+++++++|++..+|..++.+|.+.|++++|.+.|++..+..
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999987654
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=1.3e-08 Score=96.43 Aligned_cols=258 Identities=10% Similarity=-0.068 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChh----hHHHHHHHHHccCChHHHHHHHHHHhhhcc-CCCh----hHHHHHHHHHHh
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTE----TFASLLETCYQLKAVEHGIKLHRLIPTNLL-RKNK----GISSKLLRLYAT 138 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~ 138 (526)
..|++++|...++.........+.. .+..+...+...|+++.|.+.++...+... ..+. .++..+...+..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4677888888888877654332322 345555667778888888888887765321 1121 235566777788
Q ss_pred cCChhHHHHHHhccccC-----C---CC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CcchHHHHHHHHh
Q 009782 139 FGLIDEAHQVFDQMSNR-----T---AF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP----DQFTFPRVLKACA 205 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~-----~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~t~~~ll~~~~ 205 (526)
.|++++|...+++.... + +. ...+..+...+...|++++|...+++........ ...++..+...+.
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 88888888888776432 1 11 1345667777888888888888888876542211 1235666777788
Q ss_pred ccCChHHHHHHHHHHHHhCCCCc--hhHHH----HHHHHHHhcCCHHHHHHHHhhcCCCCc-------ccHHHHHHHHHh
Q 009782 206 GLGLIRVGEKVHLDAVRFGFGFD--GFVLN----ALVDMYAKCGDIVKARTVFDRIGNKDL-------ISYNSMLTGYIH 272 (526)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~g~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~ 272 (526)
..|++++|...+++.....-.++ ..... ..+..+...|++++|...+++....+. ..+..+...+..
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 265 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 265 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 88888888888888776422221 11111 233446788888888888888765432 134566777888
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCch-hHHhHHHHHHHhcCChHHHHHHhc
Q 009782 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDL-CIANSLIVVYSKDGKLDQACWLFD 351 (526)
Q Consensus 273 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 351 (526)
.|++++|...+++...... ..+..++. ..+..+..++...|+.++|...++
T Consensus 266 ~g~~~~A~~~l~~a~~~~~----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 266 LGEFEPAEIVLEELNENAR----------------------------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHH----------------------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH----------------------------hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888877654210 00101111 234456677888888888888877
Q ss_pred cC
Q 009782 352 HM 353 (526)
Q Consensus 352 ~~ 353 (526)
+.
T Consensus 318 ~a 319 (373)
T 1hz4_A 318 DA 319 (373)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=4.9e-10 Score=101.46 Aligned_cols=223 Identities=13% Similarity=-0.001 Sum_probs=160.3
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhh------cc-CCChhHHHHHHHHHHh
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN------LL-RKNKGISSKLLRLYAT 138 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~ 138 (526)
......+++|+++++.......+....++..+...+...|++++|.+.++...+. +- +....++..+...+..
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 3456778889988888876554446778889999999999999999999988764 11 2345678889999999
Q ss_pred cCChhHHHHHHhccccC--------CCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CcchHHHHHH
Q 009782 139 FGLIDEAHQVFDQMSNR--------TAF-AFPWNSLISGYAELGEYEDAIALYFQMEEE------GVEP-DQFTFPRVLK 202 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~--------~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~t~~~ll~ 202 (526)
.|++++|.+.|++.... +|. ..+|..+...+...|++++|+..+++..+. +-.| ...++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999987543 222 367888999999999999999999998764 1122 2457888889
Q ss_pred HHhccCChHHHHHHHHHHHHhC-------CCCc-hhHHHHHHHHHHhcC------CHHHHHHHHhhcCCCC---cccHHH
Q 009782 203 ACAGLGLIRVGEKVHLDAVRFG-------FGFD-GFVLNALVDMYAKCG------DIVKARTVFDRIGNKD---LISYNS 265 (526)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~g-------~~~~-~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~~---~~~~~~ 265 (526)
.+...|++++|...+++..+.. ..+. ...+..+...+...+ .+..+...++.....+ ..++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999887641 1222 233333333333322 2445555555554332 357888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 009782 266 MLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+...|...|++++|...+++..+
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 89
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.12 E-value=4.5e-10 Score=90.57 Aligned_cols=102 Identities=8% Similarity=-0.060 Sum_probs=81.0
Q ss_pred CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHH
Q 009782 421 GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498 (526)
Q Consensus 421 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (526)
.+.| +...+..+...+.+.|++++|+..|.+.+...|+ +..|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 4556777778888888888888888777777774 4777888888888888888888888888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 009782 499 LIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 499 l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
++.+|.+.|++++|.+.|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888877654
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=4.2e-10 Score=91.18 Aligned_cols=116 Identities=8% Similarity=0.013 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYAC 469 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 469 (526)
..+..+...|.+.|++++|.+.|+++.+. -+-+...|..+..+|.+.|++++|+..|.+.+...|+ ...+..+...+
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELL 109 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35667888899999999999999999864 2336888999999999999999999999888988885 58888899999
Q ss_pred HhcCChHHHHHH-HHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 470 YLHGNVCMGETA-AQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 470 ~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
.+.|++++|.+. ++++++++|+++.+|.....++.+.|+
T Consensus 110 ~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 110 CKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999998776654 689999999999999999999888875
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=1.4e-10 Score=94.05 Aligned_cols=124 Identities=14% Similarity=0.009 Sum_probs=105.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcC
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHG 473 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 473 (526)
|...+...|++++|.+.++.... ..| +...+..+...|.+.|++++|++.|.+.+...|+ ..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456677899999999988763 344 4566778999999999999999999999999995 589999999999999
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHH-HHHHHhC
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV-ERMLVDR 522 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 522 (526)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887665 5776653
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=6.3e-09 Score=90.77 Aligned_cols=134 Identities=9% Similarity=0.023 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHh------------------cCChHHHHHHHHh
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV-EHYACMVNLYGR------------------AGLIDEAYSMIVE 451 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~------------------~g~~~~A~~~~~~ 451 (526)
..+..+..++.+.|++++|...|+++.+.+.-.+.. ..+..+..++.. .|++++|...|.+
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 456667777788888888888888887652222221 234444444443 5788899988877
Q ss_pred hcCCCCCH-HHH-----------------HHHHHHHHhcCChHHHHHHHHHHHccCCCCc---chHHHHHHHHHhcCChH
Q 009782 452 KMEFEASP-VVW-----------------GALLYACYLHGNVCMGETAAQKLFELEPDNE---HNFELLIKIYGNAGRLD 510 (526)
Q Consensus 452 ~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 510 (526)
.+...|+. ..+ ..+...+.+.|++++|+..++++++..|+++ .++..++.+|.+.|+++
T Consensus 122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 88877765 222 2455678899999999999999999999976 56889999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 009782 511 DVERVERMLVDRGL 524 (526)
Q Consensus 511 ~A~~~~~~m~~~g~ 524 (526)
+|.+.++.+...+.
T Consensus 202 ~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 202 QAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999887664
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=3.4e-09 Score=94.95 Aligned_cols=167 Identities=12% Similarity=0.001 Sum_probs=126.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHh
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD----HLTFVSLLSACA 401 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~ 401 (526)
+...+-.+...+.+.|++++|...|+++. + ..|+ ...+..+..++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l----------------------------~--~~p~~~~~~~a~~~lg~~~~ 63 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVF----------------------------T--YGRTHEWAADAQFYLARAYY 63 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHG----------------------------G--GCSCSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHH----------------------------H--hCCCCcchHHHHHHHHHHHH
Confidence 34445556667777777777777776554 2 1222 456777888888
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHh--------cCChHHHHHHHHhhcCCCCCH-HHH---------
Q 009782 402 HLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGR--------AGLIDEAYSMIVEKMEFEASP-VVW--------- 462 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~p~~-~~~--------- 462 (526)
..|++++|...|+.+.+.+.-.| ....+..+..++.. .|++++|+..|.+.+...|+. ...
T Consensus 64 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~ 143 (261)
T 3qky_A 64 QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL 143 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH
Confidence 88999999999998887532222 24566777788888 889999999997777767754 333
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHHHccCCCCc---chHHHHHHHHHhc----------CChHHHHHHHHHHHh
Q 009782 463 --------GALLYACYLHGNVCMGETAAQKLFELEPDNE---HNFELLIKIYGNA----------GRLDDVERVERMLVD 521 (526)
Q Consensus 463 --------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~ 521 (526)
..+...|...|++++|+..++++++..|+++ .++..++.+|... |++++|...++++.+
T Consensus 144 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 144 RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 4567889999999999999999999999854 4788999999977 999999999999876
Q ss_pred C
Q 009782 522 R 522 (526)
Q Consensus 522 ~ 522 (526)
.
T Consensus 224 ~ 224 (261)
T 3qky_A 224 I 224 (261)
T ss_dssp H
T ss_pred H
Confidence 4
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=3.1e-08 Score=88.59 Aligned_cols=162 Identities=13% Similarity=0.084 Sum_probs=95.5
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCC-----hhHHHHHHHh---cCCchHHHHHHHHHHHCCCCC-----CHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKD-----VVSWNSIIHA---HSKDHEALIYFEQMERDGVLP-----DHLT 392 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p-----~~~~ 392 (526)
+...+..+..++...|++++|++++.+....+ ...+..++.. .++.+.|.+.+++|.+ ..| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHH
Confidence 33344466677777788887777777653322 1122222222 4666666667767766 455 2455
Q ss_pred HHHHHHH--HhccC--CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC----------CC-
Q 009782 393 FVSLLSA--CAHLG--SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF----------EA- 457 (526)
Q Consensus 393 ~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p- 457 (526)
...|..+ ....| +..+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.+...... .|
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 5555555 22233 777888888887643 344233334444777778888888877433332 24
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
++.++..++......|+ +|.++++++.+..|+++.
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 33556566665555666 677778888888887766
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=2e-09 Score=84.13 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=90.2
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHH
Q 009782 386 VLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWG 463 (526)
Q Consensus 386 ~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 463 (526)
+.|+. ..+......+.+.|++++|.+.|+++.+. -+.+...|..+..+|.+.|++++|++.+.+.+...|+ ...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44543 36677777888888888888888888764 2346778888888888888888888888778877775 47788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
.+..++...|++++|++.|+++++++|++..++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888888888888877776654
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.03 E-value=1.8e-09 Score=84.34 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=93.4
Q ss_pred CCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 422 ISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 422 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
+.|+ ...+......|.+.|++++|++.|.+.+...|+ ...|..+..++.+.|++++|+..++++++++|++..+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5564 567788899999999999999999999988885 58899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 009782 500 IKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+.+|...|++++|.+.|++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987654
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=3.1e-09 Score=106.91 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHH
Q 009782 371 DHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSM 448 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 448 (526)
.++|...+++..+ ..| +...+..+...+...|++++|.+.+++..+ ..| +...+..+...|...|++++|.+.
T Consensus 5 ~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 5 GPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444455544444 233 345666677777777777777777777764 233 466667777777777777777777
Q ss_pred HHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc---CChHHHHHHHHHHHhCC
Q 009782 449 IVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA---GRLDDVERVERMLVDRG 523 (526)
Q Consensus 449 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g 523 (526)
+.+.+...|+ ...+..+...+...|++++|.+.+++++++.|++..++..++.+|... |++++|.+.+++..+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7666666664 366677777777777777777777777777777777777777777777 77777777777766543
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=3.4e-09 Score=96.60 Aligned_cols=133 Identities=11% Similarity=-0.079 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhc-CChHHHHHHHHhhcCCCCC------
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRA-GLIDEAYSMIVEKMEFEAS------ 458 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~------ 458 (526)
..+|+.+..+|...|++++|...+++..+.+.-..+ ..++..+...|... |++++|+..|.+++...|+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 458889999999999999999999998764211112 45788899999996 9999999999888865542
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 459 -PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH-------NFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 459 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..++..+...+...|++++|+..+++++++.|.+.. .|..++.+|...|++++|...+++..+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356888999999999999999999999999887654 4788899999999999999999987653
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.02 E-value=3.6e-09 Score=97.25 Aligned_cols=232 Identities=11% Similarity=0.056 Sum_probs=137.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHH
Q 009782 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK-CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285 (526)
Q Consensus 207 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 285 (526)
.|++++|.+++++..+... .. +.+ .+++++|...|.. ....|...|++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 3556666666666554321 10 111 4666666666554 24566677777777777766
Q ss_pred HHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHH
Q 009782 286 MILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365 (526)
Q Consensus 286 m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 365 (526)
..+.... .++... -...++.+..+|...|++++|...|++
T Consensus 62 al~~~~~------------~~~~~~---------------~a~~~~~lg~~~~~~g~~~~A~~~~~~------------- 101 (307)
T 2ifu_A 62 EAEAHAN------------NRSLFH---------------AAKAFEQAGMMLKDLQRMPEAVQYIEK------------- 101 (307)
T ss_dssp HHHHHHH------------TTCHHH---------------HHHHHHHHHHHHHHTTCGGGGHHHHHH-------------
T ss_pred HHHHHHH------------cCCHHH---------------HHHHHHHHHHHHHhCCCHHHHHHHHHH-------------
Confidence 5542000 000000 123455666777778888888777763
Q ss_pred HhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHhcC
Q 009782 366 HAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RVEHYACMVNLYGRAG 440 (526)
Q Consensus 366 ~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g 440 (526)
|++++.+ .|-.. ...++..+...|.. |++++|...+++..+.+.-.. ...++..+...|.+.|
T Consensus 102 --------Al~l~~~---~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 102 --------ASVMYVE---NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp --------HHHHHHT---TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHH---cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence 2222221 11111 12466677777777 888888888888775421111 1456777888888888
Q ss_pred ChHHHHHHHHhhcCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch-----HHHHHHHHHhcCC
Q 009782 441 LIDEAYSMIVEKMEFEAS-------PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN-----FELLIKIYGNAGR 508 (526)
Q Consensus 441 ~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~ 508 (526)
++++|++.|.+.+...|+ ...+..++..+...|++++|...+++++ +.|....+ ...++.++ ..|+
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d 247 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQD 247 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcC
Confidence 888888888666643321 1355666667777888888888888888 87764432 33455555 4667
Q ss_pred hHHHHH
Q 009782 509 LDDVER 514 (526)
Q Consensus 509 ~~~A~~ 514 (526)
.+.+.+
T Consensus 248 ~~~~~~ 253 (307)
T 2ifu_A 248 EEQLLR 253 (307)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=2.4e-09 Score=89.45 Aligned_cols=159 Identities=7% Similarity=0.001 Sum_probs=122.7
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKV 408 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~ 408 (526)
+..+...+...|++++|...|++..+ ..| +...+..+...+...|++++
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~------------------------------~~P~~~~a~~~la~~~~~~g~~~~ 58 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD------------------------------ELQSRGDVKLAKADCLLETKQFEL 58 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH------------------------------HHHTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------HCCCcHHHHHHHHHHHHHCCCHHH
Confidence 34556778888888888888887663 122 45678888888999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHH-HHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 409 GERLFSVMVEKYGISPRVEHYACMVNL-YGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 409 a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
|...++.+.+. .|+...+..+... +...+...+|...+.+.+...|+ ...+..+...+...|++++|+..+++++
T Consensus 59 A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 59 AQELLATIPLE---YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp HHHHHTTCCGG---GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhc---cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999988754 3344333332222 22333444578888888888885 5888999999999999999999999999
Q ss_pred ccCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 487 ELEPDN--EHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 487 ~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+..|+. +.++..++.+|...|+.++|...|++...
T Consensus 136 ~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 136 KVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999875 55899999999999999999999988764
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=4.5e-09 Score=94.11 Aligned_cols=193 Identities=12% Similarity=0.081 Sum_probs=122.6
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh
Q 009782 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339 (526)
Q Consensus 260 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (526)
...+..+...+.+.|++++|...|+++.+.. |+.. .....+..+..+|.+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~----------------------------~~~~a~~~lg~~~~~ 64 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHE----------------------------WAADAQFYLARAYYQ 64 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCST----------------------------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCc----------------------------chHHHHHHHHHHHHH
Confidence 3445555566666666666666666665542 2110 002333455666666
Q ss_pred cCChHHHHHHhccCCC--CChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc--------cCCHHH
Q 009782 340 DGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAH--------LGSVKV 408 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~--------~~~~~~ 408 (526)
.|++++|...|+...+ |+ .|. ...+..+..++.. .|++++
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~-----------------------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 115 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQI-----------------------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRK 115 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-----------------------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCC-----------------------------CchhHHHHHHHHHHHHHhcccccccchhHHH
Confidence 7776666666654331 11 111 2234444555555 677777
Q ss_pred HHHHHHHHHHhcCCCCchhHH-----------------HHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHHH
Q 009782 409 GERLFSVMVEKYGISPRVEHY-----------------ACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALLY 467 (526)
Q Consensus 409 a~~~~~~~~~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~ 467 (526)
|...|+++.+.+ +.+.... ..+...|.+.|++++|+..|.+.+...|+ ...+..+..
T Consensus 116 A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~ 193 (261)
T 3qky_A 116 AIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMR 193 (261)
T ss_dssp HHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 777777776542 1122222 56688899999999999999888877775 256777788
Q ss_pred HHHhc----------CChHHHHHHHHHHHccCCCCcc---hHHHHHHHHHhcCChHHHH
Q 009782 468 ACYLH----------GNVCMGETAAQKLFELEPDNEH---NFELLIKIYGNAGRLDDVE 513 (526)
Q Consensus 468 ~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 513 (526)
+|... |++++|+..++++++..|+++. +...+..++.+.|+++++.
T Consensus 194 ~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 194 AYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88766 8999999999999999999864 4555666776666666544
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=3.5e-09 Score=96.21 Aligned_cols=163 Identities=7% Similarity=-0.053 Sum_probs=129.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLG 404 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 404 (526)
+...+..+...+...|++++|...|++.. + ..| +...+..+...+...|
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al----------------------------~--~~P~~~~a~~~la~~~~~~g 165 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAW----------------------------Q--LSNQNGEIGLLLAETLIALN 165 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------H--HTTSCHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHH----------------------------H--hCCcchhHHHHHHHHHHHCC
Confidence 34445566677777777777777666433 3 234 4567888899999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAA 482 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 482 (526)
++++|...++.+... .|+..... .....+...++.++|.+.+.+.+...|+ ...+..+...+...|++++|+..+
T Consensus 166 ~~~~A~~~l~~~~~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 166 RSEDAEAVLXTIPLQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp CHHHHHHHHTTSCGG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHhCchh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999999988753 45544332 3333467788889999999888888885 488899999999999999999999
Q ss_pred HHHHccCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 483 QKLFELEPDN--EHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 483 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+++++.+|++ ..++..++.+|...|+.++|...+++...
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999987 88899999999999999999998887653
No 103
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.00 E-value=1.4e-09 Score=87.70 Aligned_cols=102 Identities=12% Similarity=-0.016 Sum_probs=67.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 470 (526)
.+..+...+...|++++|...|+.+.+. -+.+...|..+..+|...|++++|++.|.+.+...|+ +..+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 5555666666777777777777776653 2335666666667777777777777777666666663 366666666777
Q ss_pred hcCChHHHHHHHHHHHccCCCCcch
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
..|++++|+..|++++++.|+++..
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 7777777777777777776665553
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=4.9e-08 Score=84.14 Aligned_cols=162 Identities=10% Similarity=-0.013 Sum_probs=130.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG- 404 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 404 (526)
++..+..+...|...+++++|+..|++. .+.| +...+..|...|.. +
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a----------------------------~~~g---~~~a~~~lg~~y~~-~g 64 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKA----------------------------AAQG---DGDALALLAQLKIR-NP 64 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------------------HHTT---CHHHHHHHHHHTTS-ST
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHH----------------------------HHcC---CHHHHHHHHHHHHc-CC
Confidence 5566677777787778877777776643 3333 45666677777777 6
Q ss_pred ---CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHHhhcCCCCC---HHHHHHHHHHHHh---
Q 009782 405 ---SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDEAYSMIVEKMEFEAS---PVVWGALLYACYL--- 471 (526)
Q Consensus 405 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~--- 471 (526)
+.++|.+.|++..+. | +...+..|...|.. .+++++|++.|.+.....|. +..+..|...|..
T Consensus 65 ~~~~~~~A~~~~~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 65 QQADYPQARQLAEKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp TSCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCC
Confidence 899999999999764 3 56777888888877 88999999999888888874 6888889999988
Q ss_pred -cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 009782 472 -HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA-G-----RLDDVERVERMLVDRGL 524 (526)
Q Consensus 472 -~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 524 (526)
.++.++|+..++++.+. |.++.++..|+.+|... | ++++|.+.+++..+.|.
T Consensus 141 ~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp SSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999988 66677899999999864 3 89999999999888764
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2.6e-09 Score=109.34 Aligned_cols=135 Identities=8% Similarity=-0.066 Sum_probs=61.0
Q ss_pred CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 009782 369 SKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 447 (526)
|++++|...|++..+. .| +...|..+..++...|++++|.+.|+++.+. .+.+...+..+..+|.+.|++++ ++
T Consensus 447 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 447 GDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp TCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TC
T ss_pred CCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HH
Confidence 4445555555544442 22 2334444444444555555555555554432 11133444444444555555555 44
Q ss_pred HHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 448 MIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 448 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
.|.+++...|+. ..|..+..++.+.|++++|++.++++++++|++..++..++.+|...|+
T Consensus 522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 444444444422 4444444445555555555555555555555544444444444444443
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=1.1e-08 Score=88.27 Aligned_cols=126 Identities=10% Similarity=0.008 Sum_probs=99.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYL 471 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 471 (526)
+..+...+...|++++|...++++ +.|+...+..+...|.+.|++++|++.+.+.+...|+ ...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 445566677788888888888765 3557778888888888888888888888777776674 4777788888888
Q ss_pred cCChHHHHHHHHHHHccCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 472 HGNVCMGETAAQKLFELEPDNE----------------HNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.|++++|++.++++++..|.+. .++..++.+|.+.|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888777766 778888888888888888888888877654
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=2.2e-09 Score=109.90 Aligned_cols=167 Identities=10% Similarity=-0.009 Sum_probs=120.4
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--C-ChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQ--K-DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD-HLTFVSLLS 398 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~ 398 (526)
+...+..+..+|...|++++|...|+++.+ | +...|..+-.. .|++++|...|++..+ ..|+ ...+..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 455666677777788888888887777664 3 33333333222 5777888888888777 4453 467889999
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCC---
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGN--- 474 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~--- 474 (526)
++...|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|++.|.+++...|+. ..+..+..++...++
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------
T ss_pred HHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCC
Confidence 9999999999 9999999874 23367889999999999999999999998999999975 777778888766665
Q ss_pred --hHHHHHHHHHHHccCCCCcchHH
Q 009782 475 --VCMGETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 475 --~~~a~~~~~~~~~~~p~~~~~~~ 497 (526)
.+...+..+.+.++.+.++....
T Consensus 587 ~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 587 VTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred CCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34444555555566666666443
No 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.92 E-value=1.7e-08 Score=83.02 Aligned_cols=128 Identities=7% Similarity=-0.021 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYAC 469 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 469 (526)
..+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+.+.+...|+ ...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45777888889999999999999999874 3446888899999999999999999999888887885 57888999999
Q ss_pred HhcCChHHHHHHHHHHHccCCCCcchHHHHHHH--HHhcCChHHHHHHHHHHH
Q 009782 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKI--YGNAGRLDDVERVERMLV 520 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~ 520 (526)
...|++++|...++++++..|.+...+..+..+ +...|++++|.+.+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999998887555554 888999999999988764
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=1.2e-08 Score=87.81 Aligned_cols=152 Identities=15% Similarity=0.021 Sum_probs=118.4
Q ss_pred cCCchHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLPDH-LTFVS----------------LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 430 (526)
.|++++|...|++..+ ..|+. ..+.. +..++...|++++|...+++..+. -+-+...+.
T Consensus 17 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 92 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLE 92 (208)
T ss_dssp TTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 6889999999999988 45654 35666 888899999999999999999874 233688899
Q ss_pred HHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC--hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 431 CMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGN--VCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
.+...|...|++++|++.|.+.+...|+ ...+..+...+...|+ .+.+...++++....|. ...+..++.++...|
T Consensus 93 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~ 171 (208)
T 3urz_A 93 ACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTT 171 (208)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHcc
Confidence 9999999999999999999888888895 4788888888766554 44556666665543333 234667788888999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 009782 508 RLDDVERVERMLVDRGL 524 (526)
Q Consensus 508 ~~~~A~~~~~~m~~~g~ 524 (526)
++++|...|++..+...
T Consensus 172 ~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 172 RYEKARNSLQKVILRFP 188 (208)
T ss_dssp THHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 99999999999886543
No 110
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=1.2e-07 Score=86.37 Aligned_cols=129 Identities=9% Similarity=-0.031 Sum_probs=101.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhc-------CCCCCH-H
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKM-------EFEASP-V 460 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~-~ 460 (526)
+..+...+...|++++|...++++.+...-.++ ..+++.+...|...|++++|...|.+++ +..+.. .
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 345666777888999999999999874112223 3368899999999999999999997776 222222 5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDN------EHNFELLIKIYGNAGR-LDDVERVERMLVD 521 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 521 (526)
++..+...|.+.|++++|+..+++++++.+.. ..+|..++.+|.+.|+ +++|.+.+++...
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999998864332 5679999999999995 6999999888753
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=5.8e-08 Score=88.07 Aligned_cols=177 Identities=12% Similarity=0.029 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhc
Q 009782 72 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 151 (526)
.+...+.+.... +.+...+..+...+.+.|++++|.+.|+...+.. +.+...+..+...+.+.|++++|...+++
T Consensus 102 ~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 102 EEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444443 3356667777788889999999999999998875 56778888999999999999999999999
Q ss_pred cccCCCCcccHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-ch
Q 009782 152 MSNRTAFAFPWN-SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-DG 229 (526)
Q Consensus 152 ~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~ 229 (526)
+...+|+..... .....+...++.++|+..+++..+.. +.+...+..+...+...|++++|...+..+.+..... +.
T Consensus 177 ~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 177 IPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp SCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred CchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 988777543222 22233667788888899898888753 3455677888888889999999999999888875221 25
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 230 FVLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
..+..++..+...|+.++|...|++
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 6778888888888888888777654
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.88 E-value=9.2e-09 Score=95.62 Aligned_cols=129 Identities=10% Similarity=-0.013 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----------------VEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
...+..+...+.+.|++++|...|+++.+. .|+ ...|..+..+|.+.|++++|+..+.+.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457788888999999999999999999875 343 4789999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 009782 454 EFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVD 521 (526)
Q Consensus 454 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 521 (526)
...|+ ...+..+..++...|++++|+..|++++++.|++..++..++.++.+.|++++| .+.++.|.+
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88885 588999999999999999999999999999999999999999999999999999 557777653
No 113
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=6.8e-08 Score=76.05 Aligned_cols=128 Identities=17% Similarity=0.152 Sum_probs=71.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAEL 172 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~ 172 (526)
+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...|+++....|. +..+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4445555666666666666666665543 334555555666666666666666666665444332 23455555566666
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
|++++|.+.++++.+.. +.+..++..+...+...|++++|...++.+.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66666666666655532 223444555555555666666666665555443
No 114
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.86 E-value=2.7e-08 Score=77.96 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 467 (526)
+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+.+.+...|+ ...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3457778888899999999999999999875 3446788899999999999999999999888877775 578888999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChH
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (526)
.+...|++++|...++++++..|.+..++..++.++.+.|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999988763
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=4.2e-08 Score=90.03 Aligned_cols=129 Identities=9% Similarity=-0.057 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--C--chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-------H
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS--P--RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-------P 459 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~ 459 (526)
.+|..+...|...|++++|...+++..+.+.-. + ...++..+...|.. |++++|++.|.+++...|. .
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 478888888999999999999999887642111 1 24677888899988 9999999999777754332 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE------HNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6788899999999999999999999999765443 256778888889999999999999876
No 116
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.85 E-value=1.4e-07 Score=84.45 Aligned_cols=139 Identities=8% Similarity=-0.083 Sum_probs=60.2
Q ss_pred HHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009782 111 IKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA---FAFPWNSLISGYAELGEYEDAIALYFQMEE 187 (526)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 187 (526)
...++...+.+ .++...+..+..++...|++++|++++.+....++ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444443332 23333333444555555555555555555433332 123444555555555555555555555544
Q ss_pred cCCCC-----CcchHHHHHHHHh--ccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 188 EGVEP-----DQFTFPRVLKACA--GLG--LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 188 ~~~~p-----~~~t~~~ll~~~~--~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
. .| +..+...+..++. ..| +...|..+|+++.+. .|+......++.++.+.|++++|++.++.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 23 1233333333321 112 455555555554332 22212222233345555555555555543
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.8e-08 Score=78.75 Aligned_cols=109 Identities=7% Similarity=-0.064 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 470 (526)
.+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+.+.+...|+ ...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4444555555556666666666655543 2224555555555555666666666655555555553 345555555555
Q ss_pred hcCChHHHHHHHHHHHccC------CCCcchHHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELE------PDNEHNFELLIKI 502 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 502 (526)
..|++++|...+++++++. |.+..+...+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 5666666666666665555 5554444444443
No 118
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=2.9e-08 Score=78.12 Aligned_cols=119 Identities=10% Similarity=0.021 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHH
Q 009782 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALL 466 (526)
Q Consensus 388 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~ 466 (526)
.+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.+.+.+...|+ ...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34557888888899999999999999998853 2336788888999999999999999999888877775 57888888
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
..+...|++++|.+.++++++..|.+...+..++.++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999988889999999887764
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=5.4e-08 Score=81.11 Aligned_cols=158 Identities=7% Similarity=0.009 Sum_probs=82.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHH-HHhc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG-YAEL 172 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~-~~~~ 172 (526)
+......+.+.|++++|...++...+.. +.+...+..+..++...|++++|+..|++....+|++..+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 4444555666777777777777766654 4456667777777777777777777777766555422211111111 1111
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHH
Q 009782 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-DGFVLNALVDMYAKCGDIVKARTV 251 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 251 (526)
+...+|+..+++..+.. +-+...+..+...+...|++++|...++.+.+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 22233455555555432 1123444555555555555555555555555443211 233444455555555555555544
Q ss_pred Hh
Q 009782 252 FD 253 (526)
Q Consensus 252 ~~ 253 (526)
|+
T Consensus 167 y~ 168 (176)
T 2r5s_A 167 YR 168 (176)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=2.2e-08 Score=80.17 Aligned_cols=106 Identities=9% Similarity=-0.032 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 470 (526)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|.+.+...|+. ..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 5555666677778888888888877753 23356677777777778888888888887777767743 66677777777
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
..|++++|+..+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88888888888888887777766644433
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.84 E-value=9.3e-09 Score=85.88 Aligned_cols=123 Identities=12% Similarity=0.120 Sum_probs=86.9
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHhcCCh--HHH
Q 009782 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL-YGRAGLI--DEA 445 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~A 445 (526)
+++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+... +...|++ ++|
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45566777777776632 224567777777788888888888888887764 23356666777777 6677777 888
Q ss_pred HHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 446 YSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 446 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
...+.+.+...|+ ...+..+...+...|++++|...++++++..|++..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888777776774 466777777788888888888888888888877655
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=4.9e-08 Score=75.73 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYA 468 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 468 (526)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|...+.+.+...| +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 457788888899999999999999999875 344677888999999999999999999977777666 45788889999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
+...|++++|...++++++..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998988888887654
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=7.8e-08 Score=77.37 Aligned_cols=106 Identities=8% Similarity=-0.020 Sum_probs=93.6
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHH
Q 009782 386 VLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWG 463 (526)
Q Consensus 386 ~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 463 (526)
+.|+. ..+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|...|++++|++.|.+++...|+ +..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 44544 37778888899999999999999999974 3347889999999999999999999999999999996 48899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
.+..+|...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999854
No 124
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.80 E-value=1.7e-08 Score=78.06 Aligned_cols=96 Identities=11% Similarity=-0.064 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
.+..+...+.+.|++++|+..+.+.+...|+ ...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888899999999999888888884 578888888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 009782 507 GRLDDVERVERMLVDRG 523 (526)
Q Consensus 507 g~~~~A~~~~~~m~~~g 523 (526)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999998887654
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=3.9e-06 Score=81.94 Aligned_cols=123 Identities=8% Similarity=0.064 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-cCChHHHHHHHHhhcCCCCC-HHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR-AGLIDEAYSMIVEKMEFEAS-PVVWGALLYA 468 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 468 (526)
..|...+....+.++.+.|..+|+.+ .. . ..+...|......-.. .++.+.|..+|...+..-|+ +..+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34566666666667788888888877 32 1 1233344322222222 23578888888666654454 3445556666
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
....|+.+.|..+|+++ +.....|...+..-...|+.+.+.++++++.
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67778888888888876 2345556777766677788888887777765
No 126
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.77 E-value=4.2e-08 Score=80.68 Aligned_cols=110 Identities=12% Similarity=0.001 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 467 (526)
+...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|.+.+...|+ ...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4557888888899999999999999999874 2337788889999999999999999999888888885 588888999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHH
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (526)
++...|++++|+..+++++++.|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887554443
No 127
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.76 E-value=2.4e-08 Score=78.04 Aligned_cols=92 Identities=8% Similarity=-0.025 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc-------hHHHHH
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH-------NFELLI 500 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 500 (526)
+..++..+.+.|++++|++.|.+++...|+ ...|..+..+|...|++++|++.+++++++.|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344455555555555555555555554553 244455555555555555555555555554443321 344445
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 009782 501 KIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~m~ 520 (526)
.+|...|++++|.+.|++..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555443
No 128
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.76 E-value=7e-08 Score=76.49 Aligned_cols=101 Identities=7% Similarity=-0.079 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 467 (526)
+...+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|...+.+.+...|+ ...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666777777777777777777777654 2334666677777777777777777777666666664 366666777
Q ss_pred HHHhcCChHHHHHHHHHHHccCCC
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
.+...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777777777777777777776665
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=7.1e-07 Score=76.79 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=87.7
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 409 (526)
+..+...+...|++++|...|++... |+...+..+...+...|++++|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--------------------------------~~~~~~~~lg~~~~~~g~~~~A 56 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--------------------------------PHSRICFNIGCMYTILKNMTEA 56 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--------------------------------CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--------------------------------CChHHHHHHHHHHHHcCCHHHH
Confidence 34566777888888888888876653 3455666666677777777777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-----------------HHHHHHHHHHHHhc
Q 009782 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-----------------PVVWGALLYACYLH 472 (526)
Q Consensus 410 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----------------~~~~~~l~~~~~~~ 472 (526)
...+++..+. .+.+...+..+...|...|++++|.+.|.+.+...|+ ...+..+...+...
T Consensus 57 ~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (213)
T 1hh8_A 57 EKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134 (213)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence 7777777654 2335566667777777777777777777665554332 15666677777777
Q ss_pred CChHHHHHHHHHHHccCCCC
Q 009782 473 GNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~ 492 (526)
|++++|...+++++++.|++
T Consensus 135 g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 135 EEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHTTCCSG
T ss_pred cCHHHHHHHHHHHHHcCccc
Confidence 77777777777777777764
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.75 E-value=6.7e-08 Score=82.31 Aligned_cols=133 Identities=8% Similarity=-0.001 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--------------hhHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR--------------VEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (526)
..+..+...+...|++++|...|+++.+...-.|+ ...+..+..+|.+.|++++|+..+.+.+...
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 35666777888999999999999999864211221 2788889999999999999999998888888
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHH-HHHHHHHhCC
Q 009782 457 AS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE-RVERMLVDRG 523 (526)
Q Consensus 457 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 523 (526)
|+ ...+..+..++...|++++|+..+++++++.|.+..++..+..++...|+.+++. ..+..|...|
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 85 5888899999999999999999999999999999999999999999999998887 5666666554
No 131
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.74 E-value=1.6e-07 Score=80.59 Aligned_cols=131 Identities=11% Similarity=0.070 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009782 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242 (526)
Q Consensus 163 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 242 (526)
+.+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+.. +.+..++..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 336677777777777777777777653 2345566777777777778888887777777764 44566677777766555
Q ss_pred CC--HHHHHHHHhhcCCCCcc--cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH
Q 009782 243 GD--IVKARTVFDRIGNKDLI--SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297 (526)
Q Consensus 243 g~--~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 297 (526)
|+ .+.+...++....++.. .+.....++...|++++|...|++..+. .|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 43 45566666666665543 2333455566677888888888877664 565443
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=9.1e-07 Score=80.49 Aligned_cols=128 Identities=9% Similarity=-0.043 Sum_probs=97.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCc--hhHHHHHHHHHHhcCChHHHHHHHHhhc---CCCCC-----HH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGI--SPR--VEHYACMVNLYGRAGLIDEAYSMIVEKM---EFEAS-----PV 460 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~p~-----~~ 460 (526)
+..+...+...|++++|...++++.+...- .+. ..+++.+...|...|++++|...+.+++ ...|+ ..
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~ 197 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence 334556677888999999999988753111 111 4578888999999999999999997766 22333 15
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC------CcchHHHHHHHHHhcCChHHH-HHHHHHHH
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPD------NEHNFELLIKIYGNAGRLDDV-ERVERMLV 520 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 520 (526)
++..+...|...|++++|+..+++++++.+. -..+|..++.+|.+.|++++| ...+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7888899999999999999999999875422 145688899999999999999 77677654
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=6.4e-08 Score=73.43 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=77.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CcchHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPD--NEHNFELLIK 501 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 501 (526)
+...+..+...+...|++++|...+.+.+...|+ ...+..+...+...|++++|.+.++++++..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556667777777888888888888777766664 466777777888888888888888888888888 7888888888
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCC
Q 009782 502 IYGNA-GRLDDVERVERMLVDRGL 524 (526)
Q Consensus 502 ~~~~~-g~~~~A~~~~~~m~~~g~ 524 (526)
+|.+. |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 88888 888888888888776543
No 134
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=3.9e-06 Score=75.80 Aligned_cols=124 Identities=7% Similarity=0.034 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH-H
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGS------VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE-A 445 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A 445 (526)
++++.++++.+.... |...|+.....+...+. ++++.+.++.+... .+-|...|+.+...+.+.|+..+ +
T Consensus 164 ~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 164 KELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHH
Confidence 445555555553222 44455555555555554 56666666666543 23355566666666656555333 2
Q ss_pred HHHHHhhcCCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCcchHHHH
Q 009782 446 YSMIVEKMEFE---A-SPVVWGALLYACYLHGNVCMGETAAQKLFE-LEPDNEHNFELL 499 (526)
Q Consensus 446 ~~~~~~~~~~~---p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l 499 (526)
.++..+..... | ++..+..+...+.+.|+.++|.++++.+.+ .+|.....|...
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 33332223222 2 335555555566666666666666666654 566555544433
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=1.2e-07 Score=74.42 Aligned_cols=99 Identities=9% Similarity=-0.030 Sum_probs=91.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
.+...+..+...+.+.|++++|.+.+.+.+...| +...+..+...+...|++++|+..++++++..|.+..++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3577888899999999999999999988888888 458889999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 009782 503 YGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 503 ~~~~g~~~~A~~~~~~m~~~ 522 (526)
|.+.|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 136
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.72 E-value=1.4e-07 Score=94.78 Aligned_cols=142 Identities=9% Similarity=-0.057 Sum_probs=114.6
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGS 405 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~ 405 (526)
...+..+...|...|++++|.+.|++.. + ..| +...+..+..++...|+
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al----------------------------~--~~p~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGL----------------------------A--LHPGHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------------T--TSTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------H--hCCCCHHHHHHHHHHHHHCCC
Confidence 4455666667777777777766665433 3 233 45688889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhc---CChHHHHHH
Q 009782 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLH---GNVCMGETA 481 (526)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~a~~~ 481 (526)
+++|.+.+++..+. .+.+...+..+...|.+.|++++|.+.+.+.+...|+ ...+..+...+... |+.++|.+.
T Consensus 73 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 73 HAEAAVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999999875 2346788899999999999999999999888888885 47888899999999 999999999
Q ss_pred HHHHHccCCCCcchHHHHH
Q 009782 482 AQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~ 500 (526)
++++++.+|.+...+..+.
T Consensus 151 ~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 151 VRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHhcCCcccChHHHhC
Confidence 9999999999887776655
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=8.8e-08 Score=77.09 Aligned_cols=108 Identities=9% Similarity=-0.015 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 412 LFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 412 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
.++.+. .+.| +...+..+...+.+.|++++|+..|.+.+...| +...|..+..++...|++++|+..+++++++.
T Consensus 9 ~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445554 4455 566778889999999999999999988888888 45888899999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
|+++.++..++.+|...|++++|.+.|++..+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988653
No 138
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.71 E-value=3.2e-07 Score=79.87 Aligned_cols=134 Identities=10% Similarity=0.010 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHH----HHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV----VWG 463 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~ 463 (526)
+...+..+...+...|++++|...|+.+.+.+...|. ...+..+..+|.+.|++++|++.|.+.+...|+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677788999999999999999976322222 35778889999999999999999988887777542 444
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHccCCCCcchH-----------------HHHHHHHHhcCC
Q 009782 464 ALLYACYL------------------HGNVCMGETAAQKLFELEPDNEHNF-----------------ELLIKIYGNAGR 508 (526)
Q Consensus 464 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~ 508 (526)
.+..++.. .|+.++|+..++++++..|+++.++ ..++..|.+.|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 45555543 5789999999999999999988765 356788999999
Q ss_pred hHHHHHHHHHHHhC
Q 009782 509 LDDVERVERMLVDR 522 (526)
Q Consensus 509 ~~~A~~~~~~m~~~ 522 (526)
+++|...++++.+.
T Consensus 163 ~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 163 WVAVVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 139
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.69 E-value=8.7e-08 Score=76.25 Aligned_cols=91 Identities=16% Similarity=0.012 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhcCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHcc-------C
Q 009782 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEAS-------------PVVWGALLYACYLHGNVCMGETAAQKLFEL-------E 489 (526)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 489 (526)
......+.+.|++++|++.|.+++...|+ ...|..+..++.+.|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444455555555555555555544444 125666666666666666666666666666 6
Q ss_pred CCCcchH----HHHHHHHHhcCChHHHHHHHHHHH
Q 009782 490 PDNEHNF----ELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 490 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
|++..+| ...+.+|...|++++|++.|++..
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666 666777777777777766666654
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=2.7e-07 Score=70.55 Aligned_cols=112 Identities=11% Similarity=0.047 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYA 468 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 468 (526)
...+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+.+.+...|+ ...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 445667777788888999999988888764 2336777888888888889999998888777777774 5777888888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...|++++|...++++++..|+++..+..+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88888999999999988888888877776666554
No 141
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2.6e-07 Score=74.15 Aligned_cols=113 Identities=13% Similarity=-0.027 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWG 463 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 463 (526)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|.+.+.+.+...|+ ...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 456777788888888888888888888874 4555 677777888888888888888888777777774 46777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
.+...+...|++++|...+++++++.|++..++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 78888888888888888888888888888776666665543
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=1.7e-07 Score=71.80 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...+..+...+...|++++|...+.+.+...| +...+..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 456677888999999999999999988887777 5588888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 009782 504 GNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~g~ 524 (526)
...|++++|.+.+++..+.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999887643
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.5e-07 Score=73.31 Aligned_cols=98 Identities=8% Similarity=-0.097 Sum_probs=89.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...+..+...+.+.|++++|++.|.+.+...|+ ...|..+..++...|++++|+..++++++++|+++.+|..++.+|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456778889999999999999999889988885 588999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009782 504 GNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~ 522 (526)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.68 E-value=1.3e-07 Score=75.61 Aligned_cols=101 Identities=12% Similarity=-0.102 Sum_probs=90.3
Q ss_pred CCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 422 ISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 422 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
+.| +...+..+...+.+.|++++|...|.+.+...|+ ...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 444 4566677888899999999999999888888884 58888899999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 009782 500 IKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.+|...|++++|.+.+++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=2.2e-06 Score=77.94 Aligned_cols=201 Identities=7% Similarity=-0.057 Sum_probs=133.9
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhH---HHHHHHHHHhcCChhHHHHHHhccccC
Q 009782 79 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI---SSKLLRLYATFGLIDEAHQVFDQMSNR 155 (526)
Q Consensus 79 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~ 155 (526)
+..+......|+..+...+...+.-. ++ .++ ......+... +...+..+...|++++|.+++++....
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~--~~---~~~----~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIP--II---HFY----EVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCC--TH---HHH----HTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcC--HH---HHh----CCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 33443333566777776666665432 11 111 1111222222 233466778899999999999987665
Q ss_pred CCCc-------ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCc----chHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 156 TAFA-------FPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQ----FTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 156 ~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
.+.. ..+..+...+...+++++|+..|++..+.... ++. .+|+.+...|...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3321 12334666667778999999999998874322 221 25888888999999999999999988742
Q ss_pred -----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCC-hHHHHHHHHHHH
Q 009782 224 -----GFGF-DGFVLNALVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGL-LVEAFDIFRGMI 287 (526)
Q Consensus 224 -----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 287 (526)
+..+ ...++..+...|.+.|++++|...+++..+ .+ ..+|..+..+|.+.|+ +++|.+.+++..
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1112 234778889999999999999999877653 11 3577888889999994 699999888765
Q ss_pred H
Q 009782 288 L 288 (526)
Q Consensus 288 ~ 288 (526)
.
T Consensus 265 ~ 265 (293)
T 3u3w_A 265 F 265 (293)
T ss_dssp H
T ss_pred H
Confidence 4
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=1.9e-07 Score=72.33 Aligned_cols=98 Identities=23% Similarity=0.297 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
...+..+...+...|++++|.+.+.+.+...|+ ...+..+...+...|++++|...++++.+..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999888877774 5788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 009782 505 NAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 505 ~~g~~~~A~~~~~~m~~~g 523 (526)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987653
No 147
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.64 E-value=6.6e-07 Score=76.96 Aligned_cols=173 Identities=13% Similarity=-0.046 Sum_probs=89.6
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcC----ChHHHHHHHHHH
Q 009782 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG----EYEDAIALYFQM 185 (526)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m 185 (526)
|.+.|+...+.| ++..+..+...|...+++++|.+.|++..+.+ ++.++..|...|.. + ++++|++.|++.
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 334444444432 44444555555555555555555555544432 12344444444444 3 555666666555
Q ss_pred HHcCCCCCcchHHHHHHHHhc----cCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHh----cCCHHHHHHHHhhcC
Q 009782 186 EEEGVEPDQFTFPRVLKACAG----LGLIRVGEKVHLDAVRFGFG-FDGFVLNALVDMYAK----CGDIVKARTVFDRIG 256 (526)
Q Consensus 186 ~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~ 256 (526)
.+.| +...+..+...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|...|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 5433 33444555555544 55666666666665554421 114455555555555 556666666665553
Q ss_pred C--CCcccHHHHHHHHHhC-C-----ChHHHHHHHHHHHHcC
Q 009782 257 N--KDLISYNSMLTGYIHH-G-----LLVEAFDIFRGMILNG 290 (526)
Q Consensus 257 ~--~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 290 (526)
+ .+...+..|...|... | ++++|...|++..+.|
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 2 3444555555555543 2 6677777776666655
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=2.9e-07 Score=75.63 Aligned_cols=98 Identities=8% Similarity=0.018 Sum_probs=85.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...+..+...+.+.|++++|++.|.+.+...| +...|..+..++...|++++|+..+++++++.|++..+|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566778888889999999999999988888888 4578888888999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009782 504 GNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~ 522 (526)
...|++++|.+.|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999998887653
No 149
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=2e-05 Score=77.00 Aligned_cols=335 Identities=11% Similarity=-0.021 Sum_probs=169.7
Q ss_pred CChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCC-hhHHHHHHhccccC---CC-CcccHHHHHHHHH----hcCCh
Q 009782 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQMSNR---TA-FAFPWNSLISGYA----ELGEY 175 (526)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~---~~-~~~~~~~li~~~~----~~~~~ 175 (526)
++++.+.++|+..... .|+...|...+....+.+. .+....+|+..... ++ +...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788888888888774 4688888888877776653 34455666654332 22 2255666665543 23567
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHhc---cC--------------ChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009782 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAG---LG--------------LIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238 (526)
Q Consensus 176 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~---~g--------------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 238 (526)
+.+.++|++.... ++.. +..+-..|.. .. .+..|..+++.+...--..+...|...+..
T Consensus 106 ~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~ 181 (493)
T 2uy1_A 106 EKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 7788888888762 2211 1222222211 11 122223333332221000122233333332
Q ss_pred HHhc--CC-----HHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhh
Q 009782 239 YAKC--GD-----IVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308 (526)
Q Consensus 239 ~~~~--g~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 308 (526)
-... |- .+.+..+|+++.. .+...|...+..+.+.|+.++|..++++.... |....+......+...
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~ 258 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDE 258 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTC
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcch
Confidence 1111 00 2234445554432 23345555566666666666666666666665 3322211111111000
Q ss_pred HHHHHHHHHHHHhCC------------CCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHH
Q 009782 309 RIGAQVHGWVLRRGV------------EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI 376 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~ 376 (526)
+ ++++.+.+.-. .....+|...+..+.+.+ ..+.|..
T Consensus 259 ~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~----------------------------~~~~AR~ 307 (493)
T 2uy1_A 259 E---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR----------------------------GLELFRK 307 (493)
T ss_dssp T---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH----------------------------CHHHHHH
T ss_pred h---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC----------------------------CHHHHHH
Confidence 0 01111111100 000112222233333333 3455556
Q ss_pred HHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 377 YFEQMERDGVLPDHLTFV--SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 377 ~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
+|+.. .. ...+...|. +.+.... .++.+.|..+|+...+.++ -+...+...++...+.|+.+.|..+|.+..
T Consensus 308 i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~- 381 (493)
T 2uy1_A 308 LFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE- 381 (493)
T ss_dssp HHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-
T ss_pred HHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 66555 21 112333443 2233222 3469999999999988632 234456667787788999999999994442
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 455 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
.....|...+..-...|+.+.+..++++..+
T Consensus 382 --k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 --KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp --CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2467788888877888999999998888875
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=5.6e-07 Score=72.13 Aligned_cols=100 Identities=17% Similarity=0.073 Sum_probs=90.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
.+...+..+...+...|++++|.+.|.+.+...|+ ...+..+...+...|++++|+..++++++..|++...+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 36778888999999999999999999889998997 57788888999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 009782 500 IKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+.+|...|++++|.+.+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=8.4e-07 Score=80.72 Aligned_cols=175 Identities=9% Similarity=-0.038 Sum_probs=117.9
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 009782 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341 (526)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (526)
.+...+..+...|++++|.+.+.+..+.......... ....+..+...+...|
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~ 129 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ---------------------------FLQWQYYVAAYVLKKV 129 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH---------------------------HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH---------------------------HHHHHHHHHHHHhcCC
Confidence 3445567788888999998888877765322111100 0111233556677778
Q ss_pred ChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD--HLTFVSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 342 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
++++|...+++..+.. .....+. ..+++.+...|...|++++|..+++++.+.
T Consensus 130 ~~~~A~~~~~~al~~~-------------------------~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~ 184 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQ-------------------------LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CHHHHHHHHHHHHTTC-------------------------CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-------------------------hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888887776433100 0001111 347888888999999999999999998732
Q ss_pred cCCCCc-----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-------HHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 009782 420 YGISPR-----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-------PVVWGALLYACYLHGNVCMG-ETAAQKLF 486 (526)
Q Consensus 420 ~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 486 (526)
....|+ ..++..+...|.+.|++++|.+.+.+++...++ ..+|..+...|...|++++| ...+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111222 257888999999999999999999776643332 47788889999999999999 77788877
Q ss_pred cc
Q 009782 487 EL 488 (526)
Q Consensus 487 ~~ 488 (526)
.+
T Consensus 265 ~~ 266 (293)
T 2qfc_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 152
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.61 E-value=3.8e-07 Score=88.55 Aligned_cols=132 Identities=9% Similarity=0.006 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-------------hhHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-------------VEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (526)
...+..+...+.+.|++++|...|+++.+...-.++ ...|..+..+|.+.|++++|+..+.+++...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 346777888899999999999999999874222111 5788899999999999999999998999888
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHH-HHHHHHh
Q 009782 457 AS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER-VERMLVD 521 (526)
Q Consensus 457 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 521 (526)
|+ ...|..+..+|...|++++|+..|++++++.|++..++..+..++.+.|++++|.+ .++.|..
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 85 58899999999999999999999999999999999999999999999999998864 5665543
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=3.3e-07 Score=71.60 Aligned_cols=99 Identities=9% Similarity=0.050 Sum_probs=90.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...+..+...+...|++++|.+.+.+.+...| +...+..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 466778889999999999999999988887777 4588888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 009782 504 GNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~g 523 (526)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999987654
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=9.1e-07 Score=75.33 Aligned_cols=133 Identities=13% Similarity=0.032 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCC---CC-C--
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKY---GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---EA-S-- 458 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p-~-- 458 (526)
....+..+...+...|++++|...+++..+.. +..| ....+..+...|...|++++|.+.+.+.+.. .+ +
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 45578888888889999999999998887631 1222 3566788888999999999999998666643 22 2
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC--CCc----chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 459 --PVVWGALLYACYLHGNVCMGETAAQKLFELEP--DNE----HNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 459 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
...+..+...+...|++++|...+++++++.+ .++ .++..++.+|...|++++|.+.+++..+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 25677888889999999999999999886432 222 2357889999999999999998887753
No 155
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.60 E-value=2.7e-07 Score=72.18 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=79.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHH
Q 009782 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRV---EHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALL 466 (526)
Q Consensus 394 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 466 (526)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|.+.+...|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345566778888888888888887641 2223 46777888888888888888888777766665 45677777
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
.++...|++++|...++++++..|+++.+.......
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 888888888888888888888888876655444433
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.58 E-value=2.7e-07 Score=75.59 Aligned_cols=120 Identities=12% Similarity=-0.034 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC----------------CCCchhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYG----------------ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
...+......+.+.|++++|...|....+... -+.+...|..+..+|.+.|++++|+..+.+.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44677778888889999999999988876300 11134677788888888999999998888888
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc-chHHHHHHHHHhcCCh
Q 009782 454 EFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE-HNFELLIKIYGNAGRL 509 (526)
Q Consensus 454 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~ 509 (526)
...|+ ...|..+..++...|++++|...+++++++.|+++ .....+..+..+.++.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 87885 47888888888899999999999999999988887 4455555555444433
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=3.7e-07 Score=72.21 Aligned_cols=98 Identities=9% Similarity=-0.053 Sum_probs=90.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
.+...+..+...+...|++++|...|.+.+...|+ ...+..+...+...|++++|+..+++++++.|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 46788899999999999999999999888888885 58889999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 009782 503 YGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 503 ~~~~g~~~~A~~~~~~m~~ 521 (526)
|...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998865
No 158
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.57 E-value=1.5e-05 Score=71.91 Aligned_cols=212 Identities=7% Similarity=-0.021 Sum_probs=148.1
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC--ChHHHHHHHHHHhhhccCCChhHHHHHHHHH----Hhc---CChh
Q 009782 73 DSIIQDLESSVQNGITVQTETFASLLETCYQLK--AVEHGIKLHRLIPTNLLRKNKGISSKLLRLY----ATF---GLID 143 (526)
Q Consensus 73 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g~~~ 143 (526)
++|+.+.+.+....+. +...++.--..+...+ +++++++.++.++... +-+..+|+..-..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 5677777777665443 4555666666666677 8888888888888765 55566777666555 445 6788
Q ss_pred HHHHHHhccccCCCCc-ccHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC------hHHHH
Q 009782 144 EAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYE--DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL------IRVGE 214 (526)
Q Consensus 144 ~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~------~~~a~ 214 (526)
+++.+++.+...+|.. .+|+.-...+.+.|.++ ++++.++++.+... -|...|+.-...+...|. +++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 8888888887776643 56776667777777777 88888888887642 355566665555666665 77788
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHhhcCC------CCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK-ARTVFDRIGN------KDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
+.++.++... +-|...|+-+-..+.+.|+... +..+..++.. .+...+..++..|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888877765 5577777777777777777433 4445555432 245667778888888888888888888876
Q ss_pred H
Q 009782 288 L 288 (526)
Q Consensus 288 ~ 288 (526)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 159
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.57 E-value=5.3e-07 Score=75.07 Aligned_cols=123 Identities=10% Similarity=0.066 Sum_probs=104.3
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHH-HHhcCCh--
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYA-CYLHGNV-- 475 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~-- 475 (526)
+...|++++|...++...+. .+.+...+..+...|...|++++|...|.+.+...|+ ...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678899999999998875 3447788999999999999999999999888887774 4777888888 7789998
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
++|+..++++++..|.+..++..++.+|...|++++|.+.++++.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999887543
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.56 E-value=9.4e-08 Score=73.45 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 009782 403 LGSVKVGERLFSVMVEKYGI-SP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 479 (526)
.|++++|...|+++.+. +. .| +...+..+..+|...|++++|++.|.+.+...|+ ...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777776642 10 12 4556666777777777777777777666666664 366666667777777777777
Q ss_pred HHHHHHHccCCCCcch
Q 009782 480 TAAQKLFELEPDNEHN 495 (526)
Q Consensus 480 ~~~~~~~~~~p~~~~~ 495 (526)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777777766553
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=2e-07 Score=90.98 Aligned_cols=120 Identities=8% Similarity=-0.004 Sum_probs=103.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGN 474 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 474 (526)
+...+.+.|++++|.+.++++.+. .+.+...|..+..+|.+.|++++|++.+.+++...|+ ...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344567889999999999999875 3336889999999999999999999999999988885 4888999999999999
Q ss_pred hHHHHHHHHHHHccCCCCcchHHHHHHH--HHhcCChHHHHHHHH
Q 009782 475 VCMGETAAQKLFELEPDNEHNFELLIKI--YGNAGRLDDVERVER 517 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 517 (526)
+++|++.+++++++.|++..++..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999888 889999999999887
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=7e-07 Score=80.57 Aligned_cols=113 Identities=9% Similarity=-0.062 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 467 (526)
+...+..+...+...|++++|...++++.+. .+.+...|..+..+|.+.|++++|.+.+.+.+...|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567778888888999999999999998864 23367888888999999999999999998888888854 78888888
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
++...|++++|+..+++++++.|++...+...+...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 999999999999999999998887654444333333
No 163
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=8e-07 Score=72.86 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
...+..+...+...|++++|...|.+.+...|+ ...+..+...+...|++++|...++++++..|.++.++..++.+|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888999999999999999888887774 5888899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 009782 505 NAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 505 ~~g~~~~A~~~~~~m~~~g 523 (526)
..|++++|.+.++++.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HhccHHHHHHHHHHHHHhC
Confidence 9999999999999987653
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.49 E-value=6.4e-07 Score=69.94 Aligned_cols=113 Identities=6% Similarity=-0.045 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC--------HHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS--------PVVW 462 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~ 462 (526)
..+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+.+.+...|+ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 46777788888899999999999999875 3446778888899999999999999999777755442 5678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
..+...+...|++++|.+.++++++..| ++.....+..++...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 8888889999999999999999999888 466666666655443
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.48 E-value=4.7e-07 Score=70.70 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------cchHH
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN-------EHNFE 497 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 497 (526)
...+..+...+...|++++|...+.+.+...| +...+..+...+...|++++|...++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45677888999999999999999988887777 45788889999999999999999999999988766 77899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 498 LLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.++.+|...|++++|.+.++++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999987643
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.48 E-value=9.3e-07 Score=83.02 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhc-------------CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKY-------------GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (526)
..+..+...+.+.|++++|.+.|+++.+.. ...| +...|..+..+|.+.|++++|++.+.+++...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677778889999999999999887610 0223 46788899999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHH
Q 009782 457 AS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 457 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
|+ ...+..+..+|...|++++|+..+++++++.|++..++..+..++...++++++.+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 95 488899999999999999999999999999999999999999999999999988653
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.48 E-value=6.2e-07 Score=69.20 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=83.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 470 (526)
.+..+...+.+.|++++|...++.+.+. -+.+...|..+..++...|++++|+..|.+.+...|+ ...+..+...+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455667788999999999999999874 3347888999999999999999999999999999995 488889999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCc
Q 009782 471 LHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
..|++++|+..++++++..|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999999864
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=1.1e-06 Score=68.58 Aligned_cols=99 Identities=9% Similarity=0.023 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--------HHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--------VVW 462 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~ 462 (526)
..+..+...+.+.|++++|++.|+++.+. .+.+...|..+..+|.+.|++++|++.+.+.+...|+. .+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 46777888999999999999999999874 23368889999999999999999999998888665532 467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
..+...+...|++++|++.|+++++..|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 78888999999999999999999998876
No 169
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=8.1e-07 Score=72.32 Aligned_cols=131 Identities=12% Similarity=-0.002 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC---C----H
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA---S----P 459 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~ 459 (526)
.++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+.+.+...+ + .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777888889999999999999988764211112 24778889999999999999999966663221 1 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC------CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPD------NEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
..+..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56778888999999999999999999875321 245688899999999999999999998764
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.46 E-value=1.3e-06 Score=65.89 Aligned_cols=102 Identities=12% Similarity=-0.025 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC---HHHHHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS---PVVWGALL 466 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~ 466 (526)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+.+.+...|+ ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 346777888899999999999999999875 3446788889999999999999999999888888887 58888899
Q ss_pred HHHHhc-CChHHHHHHHHHHHccCCCCc
Q 009782 467 YACYLH-GNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 467 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 493 (526)
..+... |++++|.+.++++++..|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999 999999999999999998764
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.45 E-value=3.4e-07 Score=85.06 Aligned_cols=129 Identities=9% Similarity=-0.082 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch------------------hHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV------------------EHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
.+..+...+.+.|++++|...|+++.+. .|+. ..|..+..+|.+.|++++|+..+.+.+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666667777777777777776643 3432 278889999999999999999998888
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH-hcCChHHHHHHHHHHHhCC
Q 009782 454 EFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG-NAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 454 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~g 523 (526)
...|+ ...|..+..+|...|++++|+..|++++++.|++..++..+..+.. ..+..+++.+.|++|....
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 88885 5888999999999999999999999999999999998888888844 5667788888888886543
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=3.1e-06 Score=65.93 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---cchHHHHHH
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDN---EHNFELLIK 501 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 501 (526)
+..+...+...|++++|.+.|.+.+...|+. ..+..+...+...|++++|...++++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3456677888999999999997777766754 377778888999999999999999999999988 677889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 009782 502 IYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 502 ~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+|...|++++|.+.++++.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999887643
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=8.5e-07 Score=82.31 Aligned_cols=117 Identities=9% Similarity=-0.003 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----------------HHHHHHH
Q 009782 404 GSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----------------VVWGALL 466 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----------------~~~~~l~ 466 (526)
+++++|...++...+. .| +...+..+...|.+.|++++|+..|.+++...|+. ..|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 4445555555444332 23 46778889999999999999999998888888864 7899999
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.++.+.|++++|+..+++++++.|++..+|..++.+|...|++++|.+.|+++.+..
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999987643
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.41 E-value=6.5e-07 Score=73.27 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCC------------------CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEF------------------EASP-VVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
.+......+.+.|++++|+..|.+.+.. .|.. ..|..+..++.+.|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3455677788889999998888777765 3322 67788888888899999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 489 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9998888999999999999999999888887654
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.38 E-value=2.6e-06 Score=72.34 Aligned_cols=121 Identities=12% Similarity=-0.003 Sum_probs=93.6
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-----------------HHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-----------------VVWG 463 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------------~~~~ 463 (526)
...|+++.+.+.|+...+. .......+..+...+.+.|++++|++.|.+.+...|+. ..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3445555555555433221 11135567788889999999999999998888766532 6788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+..++...|++++|+..+++++++.|++..++..++.+|...|++++|.+.+++..+..
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 888999999999999999999999999999999999999999999999999999987543
No 176
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.38 E-value=5.5e-06 Score=80.22 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=101.5
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcC--CCC----chhHHHHHHHHHHhcCChHHHHHHHHhhc--------CCCCCH-HHH
Q 009782 398 SACAHLGSVKVGERLFSVMVEKYG--ISP----RVEHYACMVNLYGRAGLIDEAYSMIVEKM--------EFEASP-VVW 462 (526)
Q Consensus 398 ~~~~~~~~~~~a~~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~p~~-~~~ 462 (526)
..+..+|++++|+.++++..+... +.| ...+++.|..+|...|++++|..++.+.+ ...|+. .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345678999999999988876422 222 35678999999999999999999986655 335555 789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFE-----LEPDNEHN---FELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.|...|...|++++|+.+++++++ +.|+++.+ ...+..++...|++++|..++.+++++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 46776654 567888999999999999999999764
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.37 E-value=8e-07 Score=70.70 Aligned_cols=108 Identities=12% Similarity=-0.000 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-------------hhHHHHHHHHHHhcCChHHHHHHHHhhcCC--
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-------------VEHYACMVNLYGRAGLIDEAYSMIVEKMEF-- 455 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 455 (526)
..+......+.+.|++++|...|++..+. .|+ ...|..+..++.+.|++++|+..+.+++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34566667788899999999999999864 333 238899999999999999999999888887
Q ss_pred -----CCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHH
Q 009782 456 -----EASP-VVW----GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501 (526)
Q Consensus 456 -----~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (526)
.|+. ..| .....++...|++++|+..|++++++.|.+...+..+-.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9976 788 899999999999999999999999999998775554443
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=2.4e-07 Score=71.14 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=63.6
Q ss_pred hcCChHHHHHHHHhhcCC---CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHH
Q 009782 438 RAGLIDEAYSMIVEKMEF---EASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~---~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 513 (526)
..|++++|+..|.+.+.. .|+. ..+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357778888888777776 3543 677778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhC
Q 009782 514 RVERMLVDR 522 (526)
Q Consensus 514 ~~~~~m~~~ 522 (526)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888776643
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=1.6e-06 Score=73.87 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-----CCc----ccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGN-----KDL----ISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+..+...+...|++++|...+++... .+. .++..+...+...|++++|.+.+++..+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444445555555555544443321 111 2234555566666666666666655543
No 180
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.6e-07 Score=71.19 Aligned_cols=94 Identities=15% Similarity=0.014 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------cchHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN------EHNFE 497 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 497 (526)
+...+..+...+.+.|++++|++.|.+.+...|+ ...+..+..++...|++++|+..+++++++.|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567778888888999999999999888877774 5778888888999999999999999999999988 67788
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 009782 498 LLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~ 518 (526)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888777655443
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=6.4e-06 Score=72.67 Aligned_cols=124 Identities=9% Similarity=-0.105 Sum_probs=71.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHH
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACY 470 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~ 470 (526)
.+...+...|++++|.+.|+.+.. ..|+......+...+.+.+++++|+..|.+... .|++ ..+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cCCcccHHHHHHHHHHHHH
Confidence 344555666667777666666543 234322444555566666777777776633332 2222 34555666666
Q ss_pred hcCChHHHHHHHHHHHccC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 471 LHGNVCMGETAAQKLFELE--PD-NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..|++++|+..|+++.... |. ...+....+.++.+.|+.++|..+|+++...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6777777777777665432 33 3335566666666777777777776666543
No 182
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=6e-06 Score=72.87 Aligned_cols=186 Identities=10% Similarity=-0.058 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHH-------HHHHHccCChHHHHHHHHHHhh------------hcc----C--
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASL-------LETCYQLKAVEHGIKLHRLIPT------------NLL----R-- 123 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~------------~~~----~-- 123 (526)
.+++..|.+.|....+..+. ....|..+ ...+.+.++..++...+..-.+ .|. .
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 36677888888888877544 55556555 3333333333443333333322 110 0
Q ss_pred --CChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--cchHHH
Q 009782 124 --KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD--QFTFPR 199 (526)
Q Consensus 124 --~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ 199 (526)
........+...+...|++++|.++|+.+...+|.......+...+.+.+++++|+..|+...... .|. ...+..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHH
Confidence 002234456667777888888888888887776643355555567778888888888887554321 110 224556
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFD--GFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 200 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66677777777777777777663322132 2234444555555666666666555543
No 183
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=2.6e-06 Score=76.86 Aligned_cols=145 Identities=8% Similarity=-0.029 Sum_probs=104.0
Q ss_pred cCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEA 445 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 445 (526)
.|++++|...|++..+. .| +...|..+..++.+.|++++|...++++.+ +.| +...+..+..+|...|++++|
T Consensus 17 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp TTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 68899999999999884 45 567888899999999999999999999875 344 678888999999999999999
Q ss_pred HHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 446 YSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 446 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
...|.+.+...|+. ..+...+....+ ...+...........|.+......+...+ .|++++|.+.+++..+.
T Consensus 92 ~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~ 164 (281)
T 2c2l_A 92 IANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEG 164 (281)
T ss_dssp HHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTT
T ss_pred HHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 99998888766643 222222222222 12222223333345677777666665544 68999998888765543
No 184
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.30 E-value=3.2e-05 Score=70.65 Aligned_cols=218 Identities=10% Similarity=0.035 Sum_probs=116.9
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCcHHHH-H---HHHHHhh-hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHH
Q 009782 271 IHHGLLVEAFDIFRGMILNGFDPDPVAI-S---SILANAS-LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345 (526)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~---~ll~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (526)
...+..++|++++++++.. .|+..|. + .++...+ .++++..+++.++.... -+..+|+.-..++.+.
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l----- 136 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRI----- 136 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHH-----
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHh-----
Confidence 3344556788888887775 3443332 1 1222223 24445555554444332 2333444433333333
Q ss_pred HHHHhccCCCCChhHHHHHHHhcC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHH
Q 009782 346 ACWLFDHMPQKDVVSWNSIIHAHS-KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK--------VGERLFSVM 416 (526)
Q Consensus 346 A~~~~~~~~~~~~~~~~~li~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~ 416 (526)
.+ +.++++++++.+.+... -|...|+.-...+.+.|..+ ++.+.++++
T Consensus 137 ----------------------~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 137 ----------------------SPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp ----------------------CCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ----------------------cCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 13 34455555555544211 13334444333333333333 677777777
Q ss_pred HHhcCCCCchhHHHHHHHHHHhcCC-------hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCCh-------------
Q 009782 417 VEKYGISPRVEHYACMVNLYGRAGL-------IDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNV------------- 475 (526)
Q Consensus 417 ~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~------------- 475 (526)
.+. -+-|...|+.....+.+.++ ++++++.+.+++...|+. ..|+.+-..+.+.|+.
T Consensus 194 I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 194 LRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp HHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred HHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 664 23366666666666666665 567777777777777743 6666666556555543
Q ss_pred -------HHHHHHHHHHHccC------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 476 -------CMGETAAQKLFELE------PDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 476 -------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.........+.... +.++.++..|+.+|...|+.++|.++++.+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 45677888999999999999999999998863
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.29 E-value=2.5e-06 Score=65.08 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
.+.+.++++.+. .+.+...+..+...|...|++++|+..|.+.+...|+ ...|..+...+...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355566666542 2235666677777777777777777777666666664 3666667777777777777777777777
Q ss_pred ccCCC--CcchHHHHHHHHHh
Q 009782 487 ELEPD--NEHNFELLIKIYGN 505 (526)
Q Consensus 487 ~~~p~--~~~~~~~l~~~~~~ 505 (526)
++.|. +......+...+.+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHH
Confidence 76653 23333444444433
No 186
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=0.00024 Score=64.88 Aligned_cols=214 Identities=8% Similarity=-0.006 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhc-C-ChhHHHHH
Q 009782 72 LDSIIQDLESSVQNGITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF-G-LIDEAHQV 148 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~ 148 (526)
.++|+++++.+....+. +..+++.--..+...+ +++++++.++.++... +-+..+|+.....+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 35677777777766544 5556666666666667 5899999999998765 66778888888887776 7 88999999
Q ss_pred HhccccCCCCc-ccHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-------hHH
Q 009782 149 FDQMSNRTAFA-FPWNSLISGYAELGEYE--------DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-------IRV 212 (526)
Q Consensus 149 ~~~~~~~~~~~-~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-------~~~ 212 (526)
++.+...+|.- .+|+.-...+.+.+.++ ++++.++++.+.. +-|...|+.....+...+. +++
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 99998887743 56666555555555555 8999999988864 3366677777777777765 678
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH--------------------HHHHHHHhhcCC---------CCcccH
Q 009782 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI--------------------VKARTVFDRIGN---------KDLISY 263 (526)
Q Consensus 213 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~---------~~~~~~ 263 (526)
+.+.++++.... +-|...|+-+-..+.+.|.. ....+...++.. ++....
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 888888887765 55777777766666666543 334444444432 234566
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 264 NSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
..++..|...|+.++|.++++.+.+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 77888899999999999999987653
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.24 E-value=4.4e-06 Score=60.32 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=71.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...+..+...+...|++++|...+.+.+...|+ ...+..+...+...|++++|...+++++++.|.++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3567778888899999999999999888877774 477888889999999999999999999999999999999999888
Q ss_pred HhcC
Q 009782 504 GNAG 507 (526)
Q Consensus 504 ~~~g 507 (526)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.24 E-value=8.3e-07 Score=70.42 Aligned_cols=87 Identities=9% Similarity=-0.004 Sum_probs=71.3
Q ss_pred HhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC----------hHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 009782 437 GRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGN----------VCMGETAAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
.+.+.+++|.+.+.+.+...|+ ...|..+..++...++ +++|+..|+++++++|++..+|..++.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3456677788888777777774 4777777777777665 4699999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhCC
Q 009782 506 AG-----------RLDDVERVERMLVDRG 523 (526)
Q Consensus 506 ~g-----------~~~~A~~~~~~m~~~g 523 (526)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999987654
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=9.6e-05 Score=67.16 Aligned_cols=217 Identities=9% Similarity=0.026 Sum_probs=106.3
Q ss_pred HhCCChH-HHHHHHHHHHHcCCCCcHHHHH----HHHHHhhh----------hHHHHHHHHHHHHhCCCCchhHHhHHHH
Q 009782 271 IHHGLLV-EAFDIFRGMILNGFDPDPVAIS----SILANASL----------LRIGAQVHGWVLRRGVEWDLCIANSLIV 335 (526)
Q Consensus 271 ~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 335 (526)
.+.|.++ +|+..++.+... .|+..|.- .++...+. ++.+..+++.+..... -+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4455554 788888888875 45554421 12222222 3445555555554432 24445544444
Q ss_pred HHHhcCC--hHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHH
Q 009782 336 VYSKDGK--LDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS-VKVGERL 412 (526)
Q Consensus 336 ~~~~~g~--~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~ 412 (526)
++.+.|+ ++++ +.+++.+.+... -|...|+.-...+...|. ++++.+.
T Consensus 117 lL~~l~~~~~~~E----------------------------L~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 117 LLSRLPEPNWARE----------------------------LELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHCSSCCHHHH----------------------------HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhccCcccHHHH----------------------------HHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4444442 4444 444444444221 133444444444444444 3555555
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhc--------------CChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhc-----
Q 009782 413 FSVMVEKYGISPRVEHYACMVNLYGRA--------------GLIDEAYSMIVEKMEFEASP-VVWGALLYACYLH----- 472 (526)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~----- 472 (526)
++.+.+. .+-|...|+.....+.+. +.++++++.+.+++...|+. ..|+-+-..+.+.
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 5555543 122444444444443333 33556666665666556633 4444443333333
Q ss_pred ------CChHHHHHHHHHHHccCCCCcchHHHHHHHH---HhcCChHHHHHHHHHHHh
Q 009782 473 ------GNVCMGETAAQKLFELEPDNEHNFELLIKIY---GNAGRLDDVERVERMLVD 521 (526)
Q Consensus 473 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~ 521 (526)
+.++++++.++++++++|++..++..++... ...|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 2356666666666666666644433333221 134556666666666543
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=4.6e-06 Score=80.91 Aligned_cols=117 Identities=8% Similarity=-0.014 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----------------HHHHHHHH
Q 009782 404 GSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----------------PVVWGALL 466 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------------~~~~~~l~ 466 (526)
+++++|...|+...+. .| ....+..+...|.+.|++++|+..|.+++...|+ ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 3444455444433321 12 4567788899999999999999999888877665 37888999
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+|.+.|++++|+..++++++++|++..+|..++.+|...|++++|...|+++.+..
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999987654
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=6e-06 Score=77.49 Aligned_cols=97 Identities=7% Similarity=-0.025 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcC----------------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKME----------------FEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
..+..+...+.+.|++++|++.|.+++. ..|. ...|..+..+|.+.|++++|+..+++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3466778889999999999999987776 4553 3788899999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|++..++..++.+|...|++++|.+.+++..+..
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.19 E-value=3.2e-06 Score=78.44 Aligned_cols=97 Identities=9% Similarity=-0.051 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHH------------------HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV------------------VWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
...+..+...+.+.|++++|...|.+++...|+.. .|..+..++.+.|++++|+..++++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566788889999999999999988888888754 788899999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 488 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.|++..+|..++.+|...|++++|.+.|++..+.
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654
No 193
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.13 E-value=6.2e-05 Score=68.42 Aligned_cols=182 Identities=13% Similarity=0.056 Sum_probs=134.7
Q ss_pred HhcCChH-HHHHHhccCCCCChh---HHHH---HHHhcCC----------chHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009782 338 SKDGKLD-QACWLFDHMPQKDVV---SWNS---IIHAHSK----------DHEALIYFEQMERDGVLPDHLTFVSLLSAC 400 (526)
Q Consensus 338 ~~~g~~~-~A~~~~~~~~~~~~~---~~~~---li~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 400 (526)
.+.|.++ +|+.+++.+..-|+. .|+. ++...++ .++++.+++.+..... -+..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3455554 677777777653322 2332 2222332 4678888888887422 2566787777777
Q ss_pred hccC--CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhc----
Q 009782 401 AHLG--SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL-IDEAYSMIVEKMEFEAS-PVVWGALLYACYLH---- 472 (526)
Q Consensus 401 ~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---- 472 (526)
...+ .++++..+++.+.+. -+-|...|+.-...+...|. ++++++.+.+.+...|. ...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 7777 489999999999975 34477888777777788888 58999999889988884 47787777776655
Q ss_pred ----------CChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc-----------CChHHHHHHHHHHHhC
Q 009782 473 ----------GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA-----------GRLDDVERVERMLVDR 522 (526)
Q Consensus 473 ----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~ 522 (526)
+.++++++.+.+++...|+|..+|+.+-.++.+. +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999999888888877 5678899888888754
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.12 E-value=1.3e-05 Score=59.18 Aligned_cols=65 Identities=8% Similarity=-0.131 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
+...+..+...|...|++++|+..|.+.+...|+ ...|..+..+|...|++++|++.+++++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3444455555555555555555555445544443 2445555555555555555555555555443
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.00023 Score=68.48 Aligned_cols=26 Identities=8% Similarity=-0.067 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 263 YNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+..+...|...|++++|.+.+..+..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677777788888888777776654
No 196
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=1.1e-05 Score=78.69 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
+..+...+.+.|++++|++.|.+++...|+ ...+..+..++.+.|++++|++.+++++++.|+++.++..++.+|.+.|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455677899999999999999988886 5889999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 009782 508 RLDDVERVERMLVDRG 523 (526)
Q Consensus 508 ~~~~A~~~~~~m~~~g 523 (526)
++++|.+.+++..+..
T Consensus 89 ~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 89 KFRAALRDYETVVKVK 104 (477)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999987643
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=7.5e-05 Score=74.16 Aligned_cols=138 Identities=12% Similarity=-0.005 Sum_probs=114.7
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-ChHHHHH
Q 009782 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG--SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG-LIDEAYS 447 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~ 447 (526)
.+++++.++.+.+... -+..+|..-...+.+.+ +++++.+.++++.+. -+-|...|+.-..++.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHH
Confidence 6788888888887432 25568888888888888 779999999999985 3347888888888888888 8999999
Q ss_pred HHHhhcCCCCC-HHHHHHHHHHHHhc--------------CChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHH
Q 009782 448 MIVEKMEFEAS-PVVWGALLYACYLH--------------GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511 (526)
Q Consensus 448 ~~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (526)
.+.+++...|+ ...|+.....+.+. +.++++++.+++++.++|++..+|..+..++.+.|++++
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99899999995 48888877776663 557999999999999999999999999999999888554
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.99 E-value=6.3e-06 Score=65.39 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=75.9
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh----------HHHHHHHHhhcCCCCCH-HHHHHHHHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI----------DEAYSMIVEKMEFEASP-VVWGALLYAC 469 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p~~-~~~~~l~~~~ 469 (526)
.+.+.+++|.+.++...+. -+.+...|..+..++...+++ ++|+..|.+++.++|+. ..|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3456678888888888864 233778888888888887764 59999999999999965 8899999999
Q ss_pred HhcC-----------ChHHHHHHHHHHHccCCCCcc
Q 009782 470 YLHG-----------NVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 470 ~~~g-----------~~~~a~~~~~~~~~~~p~~~~ 494 (526)
...| ++++|++.|+++++++|++..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 8774 899999999999999999765
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00015 Score=69.75 Aligned_cols=128 Identities=9% Similarity=-0.032 Sum_probs=71.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhcCChHHHHHHHHhhc------CCCCC-HHH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV----EHYACMVNLYGRAGLIDEAYSMIVEKM------EFEAS-PVV 461 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~p~-~~~ 461 (526)
+..+...|...|++++|.+++..+....+..++. ...+.+...+...|+.++|.+++.+.+ +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666677777777777666665432222221 122333334445566666666664333 22222 255
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcc------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFEL------EPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+..+...+...|++++|...++++... .|....++..++.+|...|++++|..++++..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 566666677777777777777666542 11123356666777777777777777666554
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.95 E-value=2.9e-05 Score=58.92 Aligned_cols=77 Identities=8% Similarity=-0.005 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 444 EAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 444 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+|++.|.+.+...|+ ...+..+...+...|++++|+..+++++++.|.+..+|..++.+|...|++++|.+.|++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555553 35555666666666666666666666666666666666666666666666666666666554
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=0.00022 Score=56.12 Aligned_cols=112 Identities=8% Similarity=-0.099 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 009782 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL----HGNVCMGE 479 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 479 (526)
+++++|.+.|++..+. | .|+.. |...|...+.+++|.+.|.++... .++..+..|...|.. .++.++|.
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3556666777666654 3 22222 556666666666677777555542 455566666666666 66777777
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 009782 480 TAAQKLFELEPDNEHNFELLIKIYGN----AGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 524 (526)
+.++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777777665 345667777777777 6777777777777766653
No 202
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=4.3e-05 Score=61.77 Aligned_cols=58 Identities=19% Similarity=0.031 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 231 VLNALVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 231 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
.+..+...+...|++++|.+.+++..+ .+ ..++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444555555555555555544321 11 13455566666666777777766666543
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.87 E-value=0.00023 Score=70.63 Aligned_cols=148 Identities=10% Similarity=0.008 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 009782 372 HEALIYFEQMERDGVLPDH-LTFVSLLSACAHLGS----------VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 440 (526)
++|++.++++.. +.|+. ..|+.--.++...|+ ++++.+.++.+.+. .+-+...|..-..++.+.|
T Consensus 46 eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 46 ESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 678888888888 55654 466666666666666 89999999999975 3447788888888888889
Q ss_pred --ChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc----------
Q 009782 441 --LIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHG-NVCMGETAAQKLFELEPDNEHNFELLIKIYGNA---------- 506 (526)
Q Consensus 441 --~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------- 506 (526)
+++++++.+.+++..+|. ...|+.-...+.+.| .++++++.++++++.+|.|..+|+..+.++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999889988884 588888888888889 899999999999999999999999999998885
Q ss_pred ----CChHHHHHHHHHHHhCC
Q 009782 507 ----GRLDDVERVERMLVDRG 523 (526)
Q Consensus 507 ----g~~~~A~~~~~~m~~~g 523 (526)
++++++.+.+++.....
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHhhC
Confidence 56789999988877543
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=6.5e-05 Score=56.33 Aligned_cols=66 Identities=8% Similarity=-0.044 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+...+..+...+...|++++|+..+++++++.|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456778889999999999999999999999999999999999999999999999999999988654
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=8.7e-05 Score=71.87 Aligned_cols=88 Identities=9% Similarity=-0.043 Sum_probs=72.5
Q ss_pred HHHHhcCChHHHHHHHHhhc--------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---chH
Q 009782 434 NLYGRAGLIDEAYSMIVEKM--------EFEASP-VVWGALLYACYLHGNVCMGETAAQKLFE-----LEPDNE---HNF 496 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~ 496 (526)
..+...|++++|+.++.+.+ ...|+. .+++.|..+|...|++++|+.+++++++ +.|+++ .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34668899999999986655 234444 7899999999999999999999999987 345554 458
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 497 ELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 497 ~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+.|+.+|...|++++|..++++..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998764
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.78 E-value=0.00015 Score=52.19 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHhcCC---hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 425 RVEHYACMVNLYGRAGL---IDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
|...+..+..++...++ .++|..++.+.+..+|+. ..+..+...+.+.|++++|+..|+++++..|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44455555555543332 455555555555555533 44444555555555555555555555555555
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.78 E-value=9e-05 Score=70.52 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFE-----LEPDNE---HNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.+++.+..+|...|++++|+.+++++++ ..|+++ .+++.|+.+|..+|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5556666666666666666666666654 233333 346666666666666666666666654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.75 E-value=4.8e-05 Score=56.06 Aligned_cols=62 Identities=24% Similarity=0.228 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 459 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
...+..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666677777777777777777777777777777777777777777777777777777664
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00016 Score=51.77 Aligned_cols=65 Identities=23% Similarity=0.272 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 459 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
...+..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46778888899999999999999999999999999999999999999999999999999987643
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.64 E-value=0.00024 Score=67.76 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---chHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFE-----LEPDNE---HNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.+++.+..+|...|++++|+.+++++++ ..|+++ .+++.|+.+|...|++++|..++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344444444444444444444444443 122222 22444455555555555555444444
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.59 E-value=0.00028 Score=51.57 Aligned_cols=65 Identities=18% Similarity=0.093 Sum_probs=48.2
Q ss_pred HHHHHHhcCChHHHHHHHHhhcCCCCCH-H-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 432 MVNLYGRAGLIDEAYSMIVEKMEFEASP-V-VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
....+.+.|++++|++.+.+.+...|+. . .+..+..++...|++++|++.+++++++.|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4556667788888888887777767744 5 677777777788888888888888888888777655
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.52 E-value=0.00072 Score=64.30 Aligned_cols=94 Identities=14% Similarity=0.002 Sum_probs=74.8
Q ss_pred ccCCHHHHHHHHHHHHHhc--CCCC----chhHHHHHHHHHHhcCChHHHHHHHHhhc--------CCCCCH-HHHHHHH
Q 009782 402 HLGSVKVGERLFSVMVEKY--GISP----RVEHYACMVNLYGRAGLIDEAYSMIVEKM--------EFEASP-VVWGALL 466 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~p~~-~~~~~l~ 466 (526)
..|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++.+.+ ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578999999998877642 1223 25778899999999999999999996665 345655 7899999
Q ss_pred HHHHhcCChHHHHHHHHHHHc-----cCCCCcch
Q 009782 467 YACYLHGNVCMGETAAQKLFE-----LEPDNEHN 495 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 495 (526)
..|...|++++|+.+++++++ +.|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999987 46777653
No 213
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.50 E-value=0.067 Score=53.11 Aligned_cols=266 Identities=11% Similarity=0.031 Sum_probs=130.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhhhHHH
Q 009782 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIG 311 (526)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~a 311 (526)
+..+..+.+.+++.....++.. ...+...-.....+....|+..+|....+++-..|- .|+. +
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~---------------c 139 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA---------------C 139 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH---------------H
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHH---------------H
Confidence 4445566677777777776665 333444445566677777877777776666655542 2332 2
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH
Q 009782 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHL 391 (526)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~ 391 (526)
..++..+.+.|.-.+..++. -+......|+...|..+...+..........++....+...+...... +.|+..
T Consensus 140 ~~l~~~~~~~g~lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~ 213 (618)
T 1qsa_A 140 DKLFSVWRASGKQDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDF 213 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHH
T ss_pred HHHHHHHHHCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChh
Confidence 33444444444333323332 335556667777777766665322222223333333333333332211 122222
Q ss_pred ---HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchh--HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHH
Q 009782 392 ---TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE--HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466 (526)
Q Consensus 392 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 466 (526)
.+...+.-+.+ .+.+.|...+........+.+... ....+...+...+...++...+.+.....++.....-.+
T Consensus 214 ~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 292 (618)
T 1qsa_A 214 TRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHH
Confidence 12222222333 366777777766654422322211 122233333334434445555533333333333333333
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
....+.|+++.|...++.+-.-.+..+....-+++++...|+.++|..+|.++..
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3344567777777777665543223344455666677777777777777766643
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.50 E-value=0.0083 Score=45.05 Aligned_cols=84 Identities=7% Similarity=-0.035 Sum_probs=65.1
Q ss_pred cCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
+|+.......+ -.+ ..+....+..+.....+|+-+.-.+++..++..++.++.....++.+|.+.|+..+|.+++.+
T Consensus 74 C~NlKrVi~C~-~~~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 74 CQNLKSVVECG-VIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp CSCTHHHHHHH-HHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcHHHHHHHH-HHh--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44445444444 222 344556677788888999999999999998777777788899999999999999999999999
Q ss_pred HHhCCCC
Q 009782 519 LVDRGLE 525 (526)
Q Consensus 519 m~~~g~~ 525 (526)
.-++|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 9999974
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.45 E-value=0.00036 Score=50.98 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=54.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEH-NFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
....+...|++++|+..++++++..|+++. ++..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456788999999999999999999999999 99999999999999999999999987654
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.44 E-value=0.0016 Score=62.07 Aligned_cols=100 Identities=9% Similarity=0.007 Sum_probs=79.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhc--CCCC----chhHHHHHHHHHHhcCChHHHHHHHHhhc--------CCCCCH-HH
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKY--GISP----RVEHYACMVNLYGRAGLIDEAYSMIVEKM--------EFEASP-VV 461 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~p~~-~~ 461 (526)
+..+.+.|++++|+..+++..+.. -+.| ...+++.|+.+|...|++++|+.++.+.+ ...|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999987531 1223 25678899999999999999999996655 345555 78
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCcchH
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFE-----LEPDNEHNF 496 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 496 (526)
++.|...|...|++++|+.+++++++ +.|+++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 89999999999999999999999987 468776643
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.40 E-value=0.0012 Score=47.35 Aligned_cols=67 Identities=16% Similarity=0.080 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 458 SPVVWGALLYACYLHGN---VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
++..+..+..++...++ .++|..+++++++++|+++.+...++..+.+.|+|++|...|+++.+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55777777777765554 68999999999999999999999999999999999999999999887653
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.31 E-value=0.0031 Score=57.59 Aligned_cols=71 Identities=20% Similarity=0.124 Sum_probs=56.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
+.+...|..+...+...|++++|...+.+++..+|+...|..+...+.-.|+.++|.+.+++++.++|..+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 44677777777777777888888888888887778777777777788888888888888888888888754
No 219
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.25 E-value=0.008 Score=46.97 Aligned_cols=114 Identities=11% Similarity=-0.074 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh----cCCh
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT----FGLI 142 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~ 142 (526)
.-.+++++|++.+++..+.| ++... +-..+...+.+++|.+.|+...+.| +...+..|...|.. .+++
T Consensus 6 g~~~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCccCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 34566777777777777666 22222 4444444555666666666666653 44555555555555 5566
Q ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 009782 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAE----LGEYEDAIALYFQMEEEG 189 (526)
Q Consensus 143 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 189 (526)
++|.+.|++..+.+. +.++..|...|.. .+++++|...|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666655544321 2344444445544 455555555555554443
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.24 E-value=0.001 Score=58.14 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhc-----CChHHHHHHHHhhcCCCCC--HHHHHHHHHHHHh-cCC
Q 009782 406 VKVGERLFSVMVEKYGISPR---VEHYACMVNLYGRA-----GLIDEAYSMIVEKMEFEAS--PVVWGALLYACYL-HGN 474 (526)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~-~g~ 474 (526)
...|...++++.+ +.|+ -..|..|...|.+. |+.++|.+.|++++.++|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4555666666654 3554 45677777777763 7777777777777777773 4666666666666 377
Q ss_pred hHHHHHHHHHHHccCCCC-cchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 475 VCMGETAAQKLFELEPDN-EHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.+++.+.+++++...|.. +. . .+...+.-++|..+++++
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~----~lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--N----KLLVILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--C----HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--h----hHHHHHHHHHHHHHHHHh
Confidence 777777777777766652 22 1 223333445565555544
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.20 E-value=0.0019 Score=50.53 Aligned_cols=91 Identities=15% Similarity=0.005 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC---ChHHHHHHHHhhcCCC-C--CHHHHHHHHHHHHhcCChHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG---LIDEAYSMIVEKMEFE-A--SPVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~a 478 (526)
....+++.|.+..+. + .++..+...+..++++.+ +.++++.++.+.+... | ....+-.+..++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 345556666666553 3 367777777888888877 5668888886666655 6 236667777888999999999
Q ss_pred HHHHHHHHccCCCCcchHH
Q 009782 479 ETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~ 497 (526)
.++++.+++++|++..+..
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 9999999999998876443
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.09 E-value=0.0035 Score=46.19 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--------EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
+..-+..|...+.+.|++..|...|.+++.. .+....+..+..++.+.|+++.|...+++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4455567788888888888888888665531 12347788888899999999999999999999999987765
Q ss_pred HHHH
Q 009782 497 ELLI 500 (526)
Q Consensus 497 ~~l~ 500 (526)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5443
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.05 E-value=0.01 Score=54.25 Aligned_cols=134 Identities=6% Similarity=-0.029 Sum_probs=69.3
Q ss_pred CCCChhhHHHHHHHHHc--cC---ChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh---cC-----Chh---HHHHHHh
Q 009782 87 ITVQTETFASLLETCYQ--LK---AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT---FG-----LID---EAHQVFD 150 (526)
Q Consensus 87 ~~~~~~~~~~ll~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g-----~~~---~a~~~~~ 150 (526)
.+.+...|...+++... .+ +..+|..+|++.++.. |.....+..+..+|.. .+ ... .+.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 34466777777765442 22 2466777777777653 2233444433333321 01 000 1111111
Q ss_pred ccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 151 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
.+.....++.+|..+...+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 111122233555555555555667777777776666653 55555555566666667777777666666655
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.74 E-value=0.021 Score=42.87 Aligned_cols=96 Identities=14% Similarity=0.003 Sum_probs=70.8
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH---HHHHHHhhcCCC-CC-H-HHHHHHHHHHHhcC
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE---AYSMIVEKMEFE-AS-P-VVWGALLYACYLHG 473 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p~-~-~~~~~l~~~~~~~g 473 (526)
-........+.+-+...... |. ++..+-..+..++.+.++..+ ++.++.+.+... |. . ...-.|.-++.+.|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 33344455666666666554 43 677777778888888887666 888887777665 52 2 56667778899999
Q ss_pred ChHHHHHHHHHHHccCCCCcchHH
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~ 497 (526)
+++.|.+.++.+++++|+|..+..
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999877443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.65 E-value=0.0045 Score=48.44 Aligned_cols=82 Identities=7% Similarity=-0.057 Sum_probs=65.9
Q ss_pred hHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccC-C-CCcchHHHHHHHHHhcCChHHHHHH
Q 009782 442 IDEAYSMIVEKMEF-EASPVVWGALLYACYLHG---NVCMGETAAQKLFELE-P-DNEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 442 ~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
...+.+.|.+.... .++..+.-.+..++.+++ +.++++.+++.+++.. | .+...+..|+.+|.+.|+|++|.+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34555666444432 357788888999999988 6779999999999988 6 4577899999999999999999999
Q ss_pred HHHHHhCC
Q 009782 516 ERMLVDRG 523 (526)
Q Consensus 516 ~~~m~~~g 523 (526)
++.+.+..
T Consensus 94 ~~~lL~ie 101 (152)
T 1pc2_A 94 VRGLLQTE 101 (152)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99987654
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.63 E-value=0.074 Score=55.52 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=13.8
Q ss_pred HHHHHHhcCChHHHHHHhccCC
Q 009782 333 LIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 333 l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
...+|.+.|++++|.+++.++.
T Consensus 742 A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHcC
Confidence 3445666677777777666544
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.41 E-value=0.12 Score=53.88 Aligned_cols=131 Identities=14% Similarity=0.156 Sum_probs=78.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCC
Q 009782 95 ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174 (526)
Q Consensus 95 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 174 (526)
..++..+.+.|.++.|.++.+. . ..-.......|++++|.++.+.+... ..|..+...+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~~~----~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDESAE----MKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCCCH----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhCcH----hHHHHHHHHHHHcCC
Confidence 5555555666666666654421 1 11133345677888887777665322 568888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 175 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
++.|.+.|..+.. |..+...+...|+.+...++.+.....| -++.-..+|.+.|++++|.+++.+
T Consensus 697 ~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 697 FKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877653 4455555555677666666555555444 123344455566777777665555
Q ss_pred cC
Q 009782 255 IG 256 (526)
Q Consensus 255 ~~ 256 (526)
+.
T Consensus 762 ~~ 763 (814)
T 3mkq_A 762 SQ 763 (814)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.36 E-value=1.3e-06 Score=80.83 Aligned_cols=262 Identities=14% Similarity=0.143 Sum_probs=164.4
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..|..|..+....+++.+|++.|-+. -|...|..++.++.+.|.+++-.+.+....+..- +...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 66888888888888888877655332 2556677888888888888887777766555422 333335677788
Q ss_pred HhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009782 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVL 319 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~ 319 (526)
++.++..+.++++. .||+.-...+..-|...|.++.|.-+|..+-.
T Consensus 127 Ak~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN------------------------------- 172 (624)
T 3lvg_A 127 AKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------------------------------- 172 (624)
T ss_dssp HTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-------------------------------
T ss_pred HhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-------------------------------
Confidence 88777655443332 25665666667777777777776666554322
Q ss_pred HhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
|..|..++.+.|++..|.+.-++.. +..||-.+-.+
T Consensus 173 ----------~akLAstLV~L~~yq~AVdaArKAn----------------------------------s~ktWKeV~~A 208 (624)
T 3lvg_A 173 ----------FGRLASTLVHLGEYQAAVDGARKAN----------------------------------STRTWKEVCFA 208 (624)
T ss_dssp ----------CTTTSSSSSSCSGGGSSTTTTTTCC----------------------------------SSCSHHHHTHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHhcC----------------------------------ChhHHHHHHHH
Confidence 1234445556666665544333322 44567777778
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 478 (526)
|...+.+..|.-.--.+. +.|| ....++..|-+.|.+++-+.+++..+|..- ....|+.|.-.|++- +.++.
T Consensus 209 Cvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKl 281 (624)
T 3lvg_A 209 CVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKM 281 (624)
T ss_dssp HHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHH
T ss_pred HhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHH
Confidence 888777766654433332 1222 233466778888888888888877777544 447777777777765 34444
Q ss_pred HHHHHHHHc-cC-CC------CcchHHHHHHHHHhcCChHHHHH
Q 009782 479 ETAAQKLFE-LE-PD------NEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 479 ~~~~~~~~~-~~-p~------~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
.+.++..+. ++ |. ....|..++-.|.+-..|+.|..
T Consensus 282 mEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 282 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 444444333 22 32 45668888888888888887754
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.28 E-value=0.012 Score=51.46 Aligned_cols=82 Identities=11% Similarity=0.134 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhc-C
Q 009782 372 HEALIYFEQMERDGVLPD---HLTFVSLLSACAHL-----GSVKVGERLFSVMVEKYGISP--RVEHYACMVNLYGRA-G 440 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 440 (526)
.+|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..+. .| +..++..+.+.+++. |
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcC
Confidence 557777777777 5666 34677777777774 8888888888888854 55 367777778888774 8
Q ss_pred ChHHHHHHHHhhcCCCCC
Q 009782 441 LIDEAYSMIVEKMEFEAS 458 (526)
Q Consensus 441 ~~~~A~~~~~~~~~~~p~ 458 (526)
+.++|.+.+.+.+...|.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 888888888777766555
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.37 Score=38.68 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=75.3
Q ss_pred HHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHH
Q 009782 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212 (526)
Q Consensus 133 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 212 (526)
......+|+++.|.++.+.+.. ...|..|.......|+++-|.+.|..... +..+.-.|...|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLND----SITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhCC----HHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 3344566777777777666522 25677777777777777777777777643 3444445555667666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 009782 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286 (526)
Q Consensus 213 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (526)
..++-+.....| -++.-...+.-.|+++++.++|.+..+.. .-+......|..+.|.++.+++
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 665555555444 13444455556777777777776655411 1111112245556666665544
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.13 E-value=0.026 Score=41.41 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELE-------PDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+..-.-.++..+...|+++.|...++.+++.. +....++..|+.+|.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455678889999999999999999998742 334567999999999999999999999988754
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.74 E-value=0.0024 Score=59.63 Aligned_cols=211 Identities=10% Similarity=0.043 Sum_probs=120.8
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 009782 56 PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135 (526)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 135 (526)
+..|..++....+.|.+++.+..+...++..- ++..=+.++-+|++.++..+-.+++ -.||..-...+.+-
T Consensus 83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDr 153 (624)
T 3lvg_A 83 PSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDR 153 (624)
T ss_dssp CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHH
Confidence 33455555555566666666666655544422 3333445666666666654333222 13444444555555
Q ss_pred HHhcCChhHHHHHHhccccC----------------------CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 009782 136 YATFGLIDEAHQVFDQMSNR----------------------TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193 (526)
Q Consensus 136 ~~~~g~~~~a~~~~~~~~~~----------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 193 (526)
|...|.++.|.-+|..+.+- -.++.+|..+-.+|...+.+.-|.-.--.+. +.||
T Consensus 154 cf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad 230 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD 230 (624)
T ss_dssp HHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS
T ss_pred HHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH
Confidence 66666666666665544221 1124677777777777777776655443333 1222
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CCccc
Q 009782 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-----------KDLIS 262 (526)
Q Consensus 194 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~ 262 (526)
-...++..|-..|.+++...+++..... -.....+|+.|.-.|++- +.++..+.++..-. .....
T Consensus 231 --eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 231 --ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp --CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 2234556677778888877777765522 144567788888888765 45555555544322 23467
Q ss_pred HHHHHHHHHhCCChHHHHHH
Q 009782 263 YNSMLTGYIHHGLLVEAFDI 282 (526)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~ 282 (526)
|..++-.|.+-.++|.|...
T Consensus 307 W~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHhcchhHHHHHHH
Confidence 88888888888888877543
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.057 Score=54.64 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=79.6
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHhcCCCCchhHH--HHHHHHHHhcC-ChHHHHHHHHhhcC--------CCCCH--
Q 009782 394 VSLLSACAHLGS-VKVGERLFSVMVEKYGISPRVEHY--ACMVNLYGRAG-LIDEAYSMIVEKME--------FEASP-- 459 (526)
Q Consensus 394 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~--------~~p~~-- 459 (526)
..++..+...++ .+.|..+|+++.+. .|....+ ..++..+...+ +--+|.+++.+.+. ..+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 445555555555 57788888888764 3432222 22233222222 22345555544431 11111
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 460 ---------VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 460 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
..+..-...|...|+++.|+++.+++...-|.+-.+|..|+.+|...|+|+.|+-.+.-+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 123333445778999999999999999999999999999999999999999999887765
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.41 Score=38.45 Aligned_cols=131 Identities=9% Similarity=0.099 Sum_probs=93.8
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHH
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED 177 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 177 (526)
+......|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+. .-+..+.-.|...|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-------~D~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ-------HSFDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-------TCHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh-------CCHHHHHHHHHHhCCHHH
Confidence 34455778999999987765 46778999999999999999999999988 346777777888888877
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 178 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
-.++-+.....| -++.....+...|+++++.++|.+. |--|... -.....|..+.|.++.+.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 776666655554 2666677777889999999887543 2212111 11123567777888876654
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=1.5 Score=41.68 Aligned_cols=263 Identities=8% Similarity=0.012 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHhhC-----CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhh-hccCCChhHHHHHHHHH----Hh
Q 009782 69 LQALDSIIQDLESSVQN-----GITVQTETFASLLETCYQLKAVEHGIKLHRLIPT-NLLRKNKGISSKLLRLY----AT 138 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~----~~ 138 (526)
.++++.|++.+-.+.+. +...+......++..|...++++...+.+..+.+ +|... .....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 47888898887666542 2344566788889999999999988887776654 33222 2223333332 22
Q ss_pred cCChh--HHHHHHhccccC---CCCc-----ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----chHHHHHHH
Q 009782 139 FGLID--EAHQVFDQMSNR---TAFA-----FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ-----FTFPRVLKA 203 (526)
Q Consensus 139 ~g~~~--~a~~~~~~~~~~---~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~ 203 (526)
....+ .-..+.+.+... .... .....|...+...|++.+|.+++..+...-...+. ..+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33222 233344433222 1111 11345677788888888888888887643112222 245556666
Q ss_pred HhccCChHHHHHHHHHHHHh----CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChH
Q 009782 204 CAGLGLIRVGEKVHLDAVRF----GFGFD--GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277 (526)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 277 (526)
|...+++..|..++..+... ...|+ ...+...+..+...+++.+|-+.|.+ +...+...++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e-----------~~~~~~~~~d~~ 255 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE-----------IYQTDAIKSDEA 255 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHSCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----------HHhcccccCCHH
Confidence 77777777777777665321 11222 12344555555566666666654433 222333333333
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc--CChHHHHHHhccCCC
Q 009782 278 EAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD--GKLDQACWLFDHMPQ 355 (526)
Q Consensus 278 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 355 (526)
.....+..+.- ..++...+ ..-..+.........-++...+..++.+|... .+++...+.|.....
T Consensus 256 ~~~~~L~~~v~----------~~iLa~~~--~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 256 KWKPVLSHIVY----------FLVLSPYG--NLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHHHHHH----------HHHHSSCS--STTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHHHHHHH----------HHHhCCCC--chHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 32222222110 00010001 11111122222222234566778888888764 467888888877654
Q ss_pred C
Q 009782 356 K 356 (526)
Q Consensus 356 ~ 356 (526)
+
T Consensus 324 ~ 324 (445)
T 4b4t_P 324 E 324 (445)
T ss_dssp T
T ss_pred c
Confidence 3
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.33 E-value=0.078 Score=40.90 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHhccCCH------HHHHHHHHHHHHhcCCCCch-hHHHHHHHH------HHhcCChHHHHHHHHhhcCC
Q 009782 389 DHLTFVSLLSACAHLGSV------KVGERLFSVMVEKYGISPRV-EHYACMVNL------YGRAGLIDEAYSMIVEKMEF 455 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~ 455 (526)
|..+|-..+....+.|+. ++..++|+++.. .++|+. ..|...+.. +...++.++|.++|..++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 566888888888888998 888999999987 577753 222333322 23457889999999555432
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 456 EA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 456 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
.. -...|......-.++|+...|.+++.+++.+.|.+...+...+.-+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 11 1466666666778899999999999999999988777676666554
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.26 E-value=0.21 Score=38.58 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=58.5
Q ss_pred cCCc------hHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009782 368 HSKD------HEALIYFEQMERDGVLPDHL----TFVSLLS---ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434 (526)
Q Consensus 368 ~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 434 (526)
.|+. ++..++|++.... ++|+.. .|..+-- .+...+++++|.++|+.+.+. +-.- ...|....+
T Consensus 26 ~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~-hKkF-AKiwi~~Aq 102 (161)
T 4h7y_A 26 NSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN-CKKF-AFVHISFAQ 102 (161)
T ss_dssp HTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-CTTB-HHHHHHHHH
T ss_pred cCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hHHH-HHHHHHHHH
Confidence 4666 6666777776663 566532 1111111 112337788888888888664 3222 666666666
Q ss_pred HHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 009782 435 LYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLY 467 (526)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 467 (526)
.-.+.|++..|.+++.+++|..|.+ ..+...+.
T Consensus 103 FEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 103 FELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6678888888888887788777754 44443333
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.27 E-value=0.18 Score=37.89 Aligned_cols=84 Identities=7% Similarity=-0.131 Sum_probs=63.2
Q ss_pred CChHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHccC-C-CCcchHHHHHHHHHhcCChHHHH
Q 009782 440 GLIDEAYSMIVEKME-FEASPVVWGALLYACYLHGNVCM---GETAAQKLFELE-P-DNEHNFELLIKIYGNAGRLDDVE 513 (526)
Q Consensus 440 g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~ 513 (526)
.....+.+.|.+... -.|+..+--.+.+++.++++... ++.+++.+++.. | ........|+-++.+.|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334455555544432 23677777778889988887666 999999998876 5 35566888999999999999999
Q ss_pred HHHHHHHhCC
Q 009782 514 RVERMLVDRG 523 (526)
Q Consensus 514 ~~~~~m~~~g 523 (526)
+.++.+.+.-
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999987643
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.16 E-value=0.14 Score=47.89 Aligned_cols=60 Identities=20% Similarity=0.048 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
...++..+...|+.+++...++.++...|-+...|..++.+|.+.|+..+|.+.|+++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677788888888888888888888888888888888888888888888877654
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.98 E-value=0.34 Score=36.55 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=41.8
Q ss_pred CchhHHHHHHHHHHhcCCh---HHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 424 PRVEHYACMVNLYGRAGLI---DEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
|+..+--.+..++.+..+. .+++.++.+.....|.. ..+-.+.-++.+.|+++.|.++.+.+++++|+|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3444444455555555543 34555554444444522 45555666677777777777777777777777655
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.68 E-value=0.72 Score=35.28 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=47.8
Q ss_pred CCchhHHHHHHHHHHhcCCh---HHHHHHHHhhcCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 423 SPRVEHYACMVNLYGRAGLI---DEAYSMIVEKMEFEAS-P-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
.|+..+--.+..++.+..+. .+++.++.+.....|+ . ...-.+.-++.+.|++++|.++.+.+++++|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45555555666666666543 3456666555554553 2 455556667888888888888888888888887653
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.66 E-value=1.7 Score=32.83 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=68.8
Q ss_pred hHHHHHHH--HHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC---------------
Q 009782 93 TFASLLET--CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR--------------- 155 (526)
Q Consensus 93 ~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------- 155 (526)
+...++.| ..-.|..++..++..+..... +..-+|-+|--....-+-+...++++.+...
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C 83 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVEC 83 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHH
Confidence 33444443 233566777777666665532 3333333333333333333333443333211
Q ss_pred ----CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 009782 156 ----TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225 (526)
Q Consensus 156 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 225 (526)
+.+....+..++.+...|+-++-.+++..+.. +.+|+......+..+|.+.|+..++.+++.++-+.|+
T Consensus 84 ~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 11113345556666667777777777766433 2356666666677777777777777777777776664
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.38 E-value=0.75 Score=35.18 Aligned_cols=81 Identities=9% Similarity=0.001 Sum_probs=61.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCC-CcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGN---VCMGETAAQKLFELEPD-NEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
....+-|.+..+-.|+..+--.+.+++.++.+ ..+++.+++.+++..|. .......|+-++.+.|+|++|.++.+.
T Consensus 23 ~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 23 EILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp HHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444553443446777777778888888775 45788999999988774 455678889999999999999999999
Q ss_pred HHhCC
Q 009782 519 LVDRG 523 (526)
Q Consensus 519 m~~~g 523 (526)
+.+.-
T Consensus 103 lL~~e 107 (144)
T 1y8m_A 103 LFEHE 107 (144)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 87654
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.07 E-value=0.59 Score=33.07 Aligned_cols=62 Identities=10% Similarity=0.242 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHH
Q 009782 72 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 134 (526)
.-++.+-++.+....+.|++....+.+++|.|.+++..|.++++-+...- .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 34566677777777888888888888888888888888888888776543 233456766664
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.35 E-value=0.65 Score=35.02 Aligned_cols=81 Identities=10% Similarity=0.023 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHccCCC-CcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNV---CMGETAAQKLFELEPD-NEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
....+.|.+..+-.|+..+--.+.+++.++.+. ..++.+++.+++..|. ....+..|+-++.+.|+|++|.+..+.
T Consensus 24 ~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~ 103 (134)
T 3o48_A 24 EILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 103 (134)
T ss_dssp HHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344455534334456777766778888887754 5788999999988874 456688899999999999999999999
Q ss_pred HHhCC
Q 009782 519 LVDRG 523 (526)
Q Consensus 519 m~~~g 523 (526)
+.+.-
T Consensus 104 lL~~e 108 (134)
T 3o48_A 104 LFEHE 108 (134)
T ss_dssp HHTTC
T ss_pred HHhhC
Confidence 87653
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.58 E-value=2.1 Score=30.16 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh-cCCchHHHHHHHHHHHCC
Q 009782 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFEQMERDG 385 (526)
Q Consensus 307 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~~~m~~~~ 385 (526)
.-++|..+-+++...+. ...+--.-+..+.+.|++++|..+.+...-||...|-+|-.. .|-.+++...+.++..+|
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 44566666666666554 333333445678899999999999999999999999998887 677777777777777665
Q ss_pred CCCCHHHH
Q 009782 386 VLPDHLTF 393 (526)
Q Consensus 386 ~~p~~~~~ 393 (526)
.|....|
T Consensus 99 -~p~~q~F 105 (115)
T 2uwj_G 99 -DPALADF 105 (115)
T ss_dssp -SHHHHHH
T ss_pred -CHHHHHH
Confidence 3333333
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.43 E-value=2.2 Score=30.07 Aligned_cols=77 Identities=9% Similarity=0.132 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh-cCCchHHHHHHHHHHHCC
Q 009782 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFEQMERDG 385 (526)
Q Consensus 307 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~~~m~~~~ 385 (526)
.-++|..+-+++...+. ...+--.-+..+.+.|++++|..+.+...-||...|-+|-.. .|-.+++...+.++..+|
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 44566666666666554 333333445678899999999999999999999999888877 677777777777776654
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.28 E-value=3.1 Score=42.18 Aligned_cols=126 Identities=10% Similarity=0.010 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCC-hhHHHHHHhccccCCCCcccH--HHHHHHHHhcC-ChHHHHHHHHHHHHc------CCCCCcc----
Q 009782 130 SKLLRLYATFGL-IDEAHQVFDQMSNRTAFAFPW--NSLISGYAELG-EYEDAIALYFQMEEE------GVEPDQF---- 195 (526)
Q Consensus 130 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~--~~li~~~~~~~-~~~~a~~~~~~m~~~------~~~p~~~---- 195 (526)
..++..+...|+ .+.|..+|+++...+|....+ ..++..+.+.+ +--+|..++.+..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555666 578999999988877744322 22333332222 233556665554321 1222211
Q ss_pred -------hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 196 -------TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 196 -------t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
....=.+.|...|+++.|+++-++....- +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111234567899999999999988763 5567799999999999999999999999886
No 249
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=90.62 E-value=8.2 Score=38.52 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=45.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh---cC
Q 009782 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK---DG 341 (526)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g 341 (526)
.....+.-.|+++.|.+.+-.. ...+.+.+...+..+|-+.....++..- .+ .| ..-+..||..|.+ ..
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~t 370 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKIDSSTRLTK--KP-KR-DIRFANILANYTKSFRYS 370 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC---------------------CHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccCCCcccccC--CC-cc-cccHHHHHHHHHHHhhcC
Confidence 3556777889999999987754 3577788888888776665411111110 00 11 2224567777764 46
Q ss_pred ChHHHHHHhccC
Q 009782 342 KLDQACWLFDHM 353 (526)
Q Consensus 342 ~~~~A~~~~~~~ 353 (526)
+..+|.+.|--+
T Consensus 371 d~~~Al~Y~~li 382 (661)
T 2qx5_A 371 DPRVAVEYLVLI 382 (661)
T ss_dssp CHHHHHHHHHGG
T ss_pred CHHHHHHHHHHH
Confidence 677777766544
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.55 E-value=2.3 Score=33.55 Aligned_cols=26 Identities=12% Similarity=-0.069 Sum_probs=21.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 494 HNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
..-.-+..+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 44566899999999999999998764
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.29 E-value=9.8 Score=34.13 Aligned_cols=169 Identities=16% Similarity=0.195 Sum_probs=105.4
Q ss_pred hHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 009782 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE----ALIYFEQMERDGVLPDHLTFVSLLSACAHL 403 (526)
Q Consensus 328 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 403 (526)
.+|.++..-|.+.+++++|.+++..- ...+...++... +.-+++-..+.++++|......++..+...
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G--------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV--------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH--------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 34567778899999999999987531 112222455533 444556667788999998888888877765
Q ss_pred CCHH-HHHHHHHHHHH---hcCC--CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHH
Q 009782 404 GSVK-VGERLFSVMVE---KYGI--SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 404 ~~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 477 (526)
..-+ .=..+++++.+ ++|- .-|+.....+...|.+.+++.+|..-| ..+.++.+..+..++..+...+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--HhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 4311 11222222221 1242 337888889999999999999999888 24555555777777766665544222
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+- ......+--|...|+...|..+++...
T Consensus 186 ~d--------------lfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 AP--------------LYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH--------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 21 112233445666778888877666554
No 252
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.03 E-value=3.7 Score=28.89 Aligned_cols=88 Identities=15% Similarity=0.011 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 208 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888777777653 33332333456778999999999999999999999877654 57888888888888887
Q ss_pred HcCCCCcHHHHHH
Q 009782 288 LNGFDPDPVAISS 300 (526)
Q Consensus 288 ~~~~~p~~~~~~~ 300 (526)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.96 E-value=1.7 Score=32.68 Aligned_cols=59 Identities=10% Similarity=0.281 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHH
Q 009782 74 SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133 (526)
Q Consensus 74 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 133 (526)
++.+-++.+....+.|++......+++|.+.+++..|.++++-++..- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 445555566666677777777777777777777777777777665432 23344565555
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.85 E-value=11 Score=33.89 Aligned_cols=165 Identities=12% Similarity=0.131 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCcHHHHHHHHHHh
Q 009782 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI----FRGMILNGFDPDPVAISSILANA 305 (526)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~ 305 (526)
.+|.++..=|.+.+++++|.+++-. -...+.+.|+...|-++ ++-..+.++++|......++.-+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3556677778889999999987644 23456666776665554 35556678888887776666555
Q ss_pred --------hhhHHHHHHHHHHHHhC--CCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHH
Q 009782 306 --------SLLRIGAQVHGWVLRRG--VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEAL 375 (526)
Q Consensus 306 --------~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~ 375 (526)
.+..-......+-.+.| ..-++.....+...|.+.+++.+|...|-.-.++....+..++
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL---------- 174 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARME---------- 174 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHH----------
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHH----------
Confidence 12223334444445544 3457788889999999999999999988532222223433322
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 009782 376 IYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418 (526)
Q Consensus 376 ~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 418 (526)
++...+.+ ..++...-..++ -|...++...|...++...+
T Consensus 175 --~ew~~~~~~~e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 175 --YEWYKQDESHTAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --HHHHHTSCGGGHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHhcCCccHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 22223322 112222233333 35566899999887777665
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.83 E-value=3.9 Score=28.84 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 208 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888777777653 33332333456778999999999999999999999877655 46788888888887777
Q ss_pred HcCCCCcHHHHHH
Q 009782 288 LNGFDPDPVAISS 300 (526)
Q Consensus 288 ~~~~~p~~~~~~~ 300 (526)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555543
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.45 E-value=1.8 Score=30.68 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 435 (526)
+..+-++.+....+-|++....+.+++|.+.+++..|.++|+....+ ..+...+|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 45556666667778999999999999999999999999999998875 33445567776653
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=89.04 E-value=3.6 Score=33.67 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009782 473 GNVCMGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526 (526)
Q Consensus 473 g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 526 (526)
++..++..+|..+.. ++..-+..|...+..|...|++.+|.++|+.-.+++-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334455555555544 334444445566666666666666666666655555443
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.32 E-value=2.7 Score=36.17 Aligned_cols=111 Identities=10% Similarity=0.080 Sum_probs=63.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCC
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGN 474 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~ 474 (526)
...+.|+++++++....-++. -+-|...-..|++.+|-.|+++.|..-+.-.....|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 456677777777777776653 44467777777788888888888877774444555654 234444433
Q ss_pred hHHHHHHHHHHHcc-----CCCC-cchHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 009782 475 VCMGETAAQKLFEL-----EPDN-EHNFELLIKIYG--NAGRLDDVERVERMLVD 521 (526)
Q Consensus 475 ~~~a~~~~~~~~~~-----~p~~-~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 521 (526)
+..=++++.- .+.. +.-...|+.++. ..|+.++|.++-.++.+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 2222223321 1111 122444555544 35777777777666643
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=88.26 E-value=5 Score=34.95 Aligned_cols=51 Identities=16% Similarity=-0.037 Sum_probs=24.7
Q ss_pred HHHHHHccCChHHHHHHHHHHhhhccCCChh---HHHHHHHHHHhcCChhHHHHHHhc
Q 009782 97 LLETCYQLKAVEHGIKLHRLIPTNLLRKNKG---ISSKLLRLYATFGLIDEAHQVFDQ 151 (526)
Q Consensus 97 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~ 151 (526)
.+...++.|+.+....+++ .|..++.. .-.+.+...+..|+.+-+..+++.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 4444556677665554443 33322211 112334445566776666655554
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.24 E-value=14 Score=40.15 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=35.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 152 (526)
...++..+...+..+.+.++.... +.++...-.+..++..+|++++|.+.|++.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334566666777777776655433 233333334566778899999999999876
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.83 E-value=2 Score=40.01 Aligned_cols=69 Identities=9% Similarity=0.091 Sum_probs=54.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHH-------HhhcCCCCCHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI-------VEKMEFEASPVVW 462 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-------~~~~~~~p~~~~~ 462 (526)
....++.++...|+++++...+..+... .+-+...|..+|.+|.+.|+..+|++.| .+.+|..|.+.+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3456677788899999999999888764 3447788999999999999999999888 2345888887543
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.97 E-value=1.8 Score=37.24 Aligned_cols=61 Identities=10% Similarity=0.180 Sum_probs=51.1
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
..+.+.|++++|++...+.++.+|. ...-..|+..+|-.|+++.|.+.++...+++|....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4566889999999999888888884 467777888899999999999999999999988433
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.11 E-value=8.6 Score=41.68 Aligned_cols=122 Identities=10% Similarity=-0.037 Sum_probs=81.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc-CCC-----------------
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM-EFE----------------- 456 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----------------- 456 (526)
.++..+...+..+.+.++..- .+.+...--.+..+|...|++++|.+.|.++- +..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 455566666776666554322 22344444566778888899999998885543 110
Q ss_pred ------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC-CCcc----hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 457 ------ASPVVWGALLYACYLHGNVCMGETAAQKLFELEP-DNEH----NFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 457 ------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.-...|..++..+.+.|.++.+.++.+.+++..+ ++.. .|..+.+.+...|+|++|-..+-.+.+.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 0113467777888889999999999988887543 3321 5777888899999999998777666544
No 264
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.27 E-value=7.7 Score=30.14 Aligned_cols=49 Identities=10% Similarity=0.002 Sum_probs=32.0
Q ss_pred HHHHHHHHHc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009782 478 GETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526 (526)
Q Consensus 478 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 526 (526)
+..+|+.+.. +....+..|...+..+...|++.+|.++++.-.+++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666654 344455557777777777777777777777776666554
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.06 E-value=5.2 Score=30.10 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 435 (526)
+..+-++.+...++-|++......+++|.+.+|+..|.++|+-.+.+ ..+....|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 45556666667789999999999999999999999999999999875 44456667777653
No 266
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=82.10 E-value=18 Score=30.40 Aligned_cols=53 Identities=11% Similarity=-0.023 Sum_probs=27.0
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChh--HHHHHHHHHHhcCChhHHHHHHh
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKG--ISSKLLRLYATFGLIDEAHQVFD 150 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~ 150 (526)
+...++.|+.+....+++.+.+.|..++.. .-.+.+...+..|+.+-+..+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 334445667776666666655554443321 11123344455666665555554
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.94 E-value=27 Score=30.99 Aligned_cols=168 Identities=11% Similarity=0.068 Sum_probs=102.4
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE----ALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 404 (526)
.|.++..-|.+.+++++|.+++..-. ..+..+++... |.-+++-..+.+++++......++..+....
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga--------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA--------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH--------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 45677788899999999999875311 12222455543 4445666667889999888888887775532
Q ss_pred CHH-HHHHHHHHHHH---hcCC--CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---CCh
Q 009782 405 SVK-VGERLFSVMVE---KYGI--SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH---GNV 475 (526)
Q Consensus 405 ~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~ 475 (526)
.-+ .-.++++.+.+ ..|- ..++..+..+...|.+.|++.+|..-|. .+..-++..+..++.-+... |..
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i--~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM--LGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH--hCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 111 11223333321 1122 2377888999999999999999998872 33222456666666666554 544
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.++--+ ....+--|.-.|+...|..+++...
T Consensus 185 ~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVAEF--------------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred chHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 332111 1222334556778888888777654
No 268
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=80.72 E-value=11 Score=29.64 Aligned_cols=29 Identities=7% Similarity=-0.092 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
..|......+...|++.+|.++|+..++.
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444445555555555555555543
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.13 E-value=41 Score=31.81 Aligned_cols=182 Identities=12% Similarity=0.092 Sum_probs=118.6
Q ss_pred CChHHHHHHHHHHhh-----hccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC-CcccHHHHH----HHHHhcCC
Q 009782 105 KAVEHGIKLHRLIPT-----NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA-FAFPWNSLI----SGYAELGE 174 (526)
Q Consensus 105 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li----~~~~~~~~ 174 (526)
++++.|.+.+-.+.+ ........+...++..|...|+++...+.+..+..... ...+-..++ ........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 577777776655543 23345567788899999999999999888776654422 112233333 33333444
Q ss_pred hHH--HHHHHHHHHHcCCCCCc--------chHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHH
Q 009782 175 YED--AIALYFQMEEEGVEPDQ--------FTFPRVLKACAGLGLIRVGEKVHLDAVRF--GFGFD---GFVLNALVDMY 239 (526)
Q Consensus 175 ~~~--a~~~~~~m~~~~~~p~~--------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~ 239 (526)
.+. -..+.+... .+.... .....|...+...|++.+|.+++..+... |.... ...+...+..|
T Consensus 110 ~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332 222222221 111111 12356778889999999999999998653 22221 34677788999
Q ss_pred HhcCCHHHHHHHHhhcCC-----C-C----cccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 240 AKCGDIVKARTVFDRIGN-----K-D----LISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
...+++.+|..++.++.. + + ...+...+..+...+++.+|-+.|.+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999998887642 1 1 13456677788889999999998888765
No 270
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=77.85 E-value=9.9 Score=31.92 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=9.9
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 009782 236 VDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~ 254 (526)
+...+..|+.+-+.-+++.
T Consensus 181 L~~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444455665555555544
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.72 E-value=40 Score=29.91 Aligned_cols=187 Identities=9% Similarity=0.089 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHH----HH
Q 009782 210 IRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI----FR 284 (526)
Q Consensus 210 ~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~ 284 (526)
+++.+.-++.-++.|- ---..+|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 3444444444444441 11223566677778888999999887654 23456667777666554 55
Q ss_pred HHHHcCCCCcHHHHHHHHHHh--------hhhHHHHHHHHHHHHhCC--CCchhHHhHHHHHHHhcCChHHHHHHhccCC
Q 009782 285 GMILNGFDPDPVAISSILANA--------SLLRIGAQVHGWVLRRGV--EWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 285 ~m~~~~~~p~~~~~~~ll~~~--------~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
-..+.+++++......++.-+ .+.+-......+-.+.|. .-++.....+...|.+.|++.+|...|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 556668888887776666554 122334444455454443 3478889999999999999999998775322
Q ss_pred CCChhHHHHHHHhcCCchHHHHHHHHHHHC--CCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 355 QKDVVSWNSIIHAHSKDHEALIYFEQMERD--GVLPDHLTF-VSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 355 ~~~~~~~~~li~~~~~~~~a~~~~~~m~~~--~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
..+...+..+ +++...+. |.+-....| ...+-.|...|+...|..+++...+.
T Consensus 162 ~~s~~~~a~~------------l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 162 HDSMIKYVDL------------LWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHH------------HHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CccHHHHHHH------------HHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1122222222 22233222 322112222 12222345668999999988877654
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.16 E-value=29 Score=29.88 Aligned_cols=18 Identities=11% Similarity=0.243 Sum_probs=10.1
Q ss_pred HHHHHhcCChHHHHHHhc
Q 009782 334 IVVYSKDGKLDQACWLFD 351 (526)
Q Consensus 334 ~~~~~~~g~~~~A~~~~~ 351 (526)
+...++.|+.+-+..+++
T Consensus 223 L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 344455666666655555
No 273
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=75.16 E-value=25 Score=32.91 Aligned_cols=173 Identities=13% Similarity=0.111 Sum_probs=78.2
Q ss_pred HHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh--cCCchHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccC
Q 009782 333 LIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA--HSKDHEALIYFEQMERDGVLPDHL---TFVSLLSACAHLG 404 (526)
Q Consensus 333 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~--~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~ 404 (526)
.+...+..|+.+-+..+++.-.. .+....+.|..+ .+. .++++.+.+.|..++.. -.+. +...+..|
T Consensus 215 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~ 289 (437)
T 1n11_A 215 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH----AEMVALLLSKQANGNLGNKSGLTP-LHLVAQEG 289 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHTTTCCTTCCCTTCCCH-HHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCC----HHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcC
Confidence 34556678888888888775433 222222333333 233 23444555566555432 2223 33344556
Q ss_pred CHHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRV---EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a 478 (526)
..+-+. .+.+. |..++. ...+.| ...+..|+.+-+.-++.. +..++. .-.+ .+......|+.+-.
T Consensus 290 ~~~~~~----~Ll~~-g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~--gad~n~~~~~g~t-~L~~A~~~g~~~iv 360 (437)
T 1n11_A 290 HVPVAD----VLIKH-GVMVDATTRMGYTPL-HVASHYGNIKLVKFLLQH--QADVNAKTKLGYS-PLHQAAQQGHTDIV 360 (437)
T ss_dssp CHHHHH----HHHHH-TCCTTCCCSSCCCHH-HHHHHSSCSHHHHHHHHT--TCCTTCCCTTSCC-HHHHHHHTTCHHHH
T ss_pred CHHHHH----HHHhC-CccCCCCCCCCCCHH-HHHHHcCcHHHHHHHHhc--CCCCCCCCCCCCC-HHHHHHHCChHHHH
Confidence 655443 33444 555432 222333 334466777666555532 333322 1122 23344566776655
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.-+++.-...+..+..-...+ ....+.| +.+..++++...+
T Consensus 361 ~~Ll~~ga~~~~~~~~g~t~l-~~A~~~g-~~~~~~~l~~~~~ 401 (437)
T 1n11_A 361 TLLLKNGASPNEVSSDGTTPL-AIAKRLG-YISVTDVLKVVTD 401 (437)
T ss_dssp HHHHHTTCCSCCCCSSSCCHH-HHHHHTT-CHHHHHHHHHHCC
T ss_pred HHHHHCcCCCCCCCCCCCCHH-HHHHHcC-cHHHHHHHHhccc
Confidence 444443222221122112222 2223334 4556666665543
No 274
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.01 E-value=5.7 Score=31.31 Aligned_cols=60 Identities=8% Similarity=-0.109 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc---------hHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEH---------NFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
++-.-+..+...|.++.|+-+...++.+..+++. ++..+++++...|+|..|...|++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344455566667777777776666554322221 46677888888888888888887753
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.29 E-value=20 Score=33.82 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=31.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCChHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP--RVEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
+...+...+.+.|+++.|.+.+.++... ...+ -...+-..++.+...+++..+...+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~ 191 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKL 191 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4455556666666666666666666543 2222 2344455555566666666665555
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.80 E-value=56 Score=30.17 Aligned_cols=157 Identities=11% Similarity=-0.019 Sum_probs=93.4
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCC--------CChhHHHHHHHhcCCc----hHHHHHHHHHHHCCCCCCHHHH----
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQ--------KDVVSWNSIIHAHSKD----HEALIYFEQMERDGVLPDHLTF---- 393 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~----~~a~~~~~~m~~~~~~p~~~~~---- 393 (526)
...|...|.+.|+.++..+++..... ........++..+... +.-.++..+..+..-. ...+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45678889999999998888877654 1222344555554332 3333444443321000 11122
Q ss_pred --HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhc----CCCCCHHHH-
Q 009782 394 --VSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKM----EFEASPVVW- 462 (526)
Q Consensus 394 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~- 462 (526)
.-++..|...|++.+|.+++..+.+...-..| ...+..-++.|...+++.++...+.++. .+.|++...
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 25777888899999998888888774221111 3445566777888899988888884443 122333221
Q ss_pred ---HHHHHHHH-hcCChHHHHHHHHHHHc
Q 009782 463 ---GALLYACY-LHGNVCMGETAAQKLFE 487 (526)
Q Consensus 463 ---~~l~~~~~-~~g~~~~a~~~~~~~~~ 487 (526)
..-+..+. ..+++..|...|-+.++
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 22223355 68888888888777654
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.51 E-value=19 Score=33.90 Aligned_cols=94 Identities=9% Similarity=0.011 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CcchHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCchh----
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEP--DQFTFPRVLKACAGLGLIRVGEKVHLDAVRF---GFGFDGF---- 230 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~---- 230 (526)
.++..+...|.+.|+++.|.+.|.++...-..+ -...+-.+++.+...+++..+...+.++... +-.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 456677777778888888888887777642222 2335666777777778888877777776543 2122221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhc
Q 009782 231 VLNALVDMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 231 ~~~~li~~~~~~g~~~~A~~~~~~~ 255 (526)
.|..+ .+...+++..|-+.|-+.
T Consensus 212 ~~~gl--~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGI--HCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHH--GGGGTSCHHHHHHHHHHH
T ss_pred HHHHH--HHHHhChHHHHHHHHHHH
Confidence 12211 233567788777776554
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=71.35 E-value=39 Score=27.32 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
+..+-...+.++.+.|+.+....+...+..++...-...+.++.+.|. .++...+..+.
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 333334444444444443322223333333444444444445554443 23344444443
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=70.54 E-value=42 Score=27.38 Aligned_cols=80 Identities=5% Similarity=-0.006 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHH
Q 009782 89 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168 (526)
Q Consensus 89 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 168 (526)
++...-...+.++.+.+..+....+.+ +.. .++..+-...+.++++.++.+....+.+.+.+.++ ..-...+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~--~vr~~a~~a 104 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDG--WVRQSAAVA 104 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSH--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCH--HHHHHHHHH
Confidence 355555556666666655333333332 222 24555555566666666654433333333332222 333444444
Q ss_pred HHhcCC
Q 009782 169 YAELGE 174 (526)
Q Consensus 169 ~~~~~~ 174 (526)
+.+.++
T Consensus 105 L~~~~~ 110 (211)
T 3ltm_A 105 LGQIGD 110 (211)
T ss_dssp HHHHCC
T ss_pred HHHhCc
Confidence 554444
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.52 E-value=45 Score=27.26 Aligned_cols=67 Identities=7% Similarity=0.025 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 009782 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG 229 (526)
Q Consensus 162 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 229 (526)
|-..+..+ ..+...++.++|..|...|+--... -|......+...|++.+|.++|+..++.+-.|-.
T Consensus 83 Wl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 83 WIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44444433 2333567778888887776654443 4566666677777778887777777777666643
No 281
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=69.51 E-value=23 Score=29.55 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=10.1
Q ss_pred HHHHHhcCChhHHHHHHhc
Q 009782 133 LRLYATFGLIDEAHQVFDQ 151 (526)
Q Consensus 133 l~~~~~~g~~~~a~~~~~~ 151 (526)
+...+..|..+-+..+++.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334455666655555554
No 282
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=68.60 E-value=1.2e+02 Score=31.77 Aligned_cols=247 Identities=11% Similarity=-0.019 Sum_probs=132.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC----Cc--ccHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CC---cHHHHHHHHHH
Q 009782 236 VDMYAKCGDIVKARTVFDRIGNK----DL--ISYNSMLTGYIHHGLLVEAFDIFRGMILNGF--DP---DPVAISSILAN 304 (526)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p---~~~~~~~ll~~ 304 (526)
--+.+..|+.+++..+++..... +. ..-..+.-+....|..+++..++.......- .- +...-....-+
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 34566788888899888876642 21 2223344456667776778887777665321 01 11111111112
Q ss_pred h-----hh-hHHHHHHHHHHHHhCCCCch--hHHhHHHHHHHhcCChHHHHHHhccCCC-CChhHHHHHHH-----hcCC
Q 009782 305 A-----SL-LRIGAQVHGWVLRRGVEWDL--CIANSLIVVYSKDGKLDQACWLFDHMPQ-KDVVSWNSIIH-----AHSK 370 (526)
Q Consensus 305 ~-----~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~-----~~~~ 370 (526)
+ |. -+++...+..+...... .. ..--++...++-.|+-+....++..+.+ .+......+.. .+|+
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2 21 23445555554443211 11 1122334445566777777777665432 22222222222 2688
Q ss_pred chHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 009782 371 DHEALIYFEQMERDGVLPDHL--TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 448 (526)
.+.+..+++.+... ..|... ....+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 88888888888763 223222 2234555788899988888899988763 333444444444555567777777777
Q ss_pred HHhhcCCCCCHHHHHHHHH--HHHhcCCh-HHHHHHHHHHHc
Q 009782 449 IVEKMEFEASPVVWGALLY--ACYLHGNV-CMGETAAQKLFE 487 (526)
Q Consensus 449 ~~~~~~~~p~~~~~~~l~~--~~~~~g~~-~~a~~~~~~~~~ 487 (526)
+ +.+....++.+-..... +....|+. .++...+..+..
T Consensus 617 v-~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 V-QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp T-TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred H-HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7 54433444433333333 33334443 566777777653
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.94 E-value=33 Score=26.59 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 009782 372 HEALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 424 (526)
+++.++|..|..+|+--.. ..|......+...|++++|.++|+.-.++ +-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 3467777777777665443 35666666667777777777777777665 5555
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=65.43 E-value=15 Score=30.56 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=24.6
Q ss_pred HHHHHHHHHc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009782 478 GETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525 (526)
Q Consensus 478 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 525 (526)
+..+|..+.. +.-.-+..|...+..|...|++.+|.++|+.-.+++-+
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3344444443 33334444555555555666666666666555554443
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=64.86 E-value=37 Score=27.47 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=18.9
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
..|.+.|.+++|.+++++.....+.+...-..|..+-.+.+
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 34666666666666666665555444443344443333333
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=63.16 E-value=26 Score=30.63 Aligned_cols=143 Identities=10% Similarity=-0.103 Sum_probs=59.9
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC-CcccHHHHHHHHHhcCChH
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA-FAFPWNSLISGYAELGEYE 176 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~ 176 (526)
+...+..|+.+.+..+++. |..++...-.+.+...+..|+.+-+..+++.-...+. +...++ .+...+..|+.+
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHH
Confidence 3344456676655544443 3333322122334445566776666666654221111 111122 233334455544
Q ss_pred HHHHHHHHHHHcCCCCCcc---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 009782 177 DAIALYFQMEEEGVEPDQF---TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-DGFVLNALVDMYAKCGDIVKARTVF 252 (526)
Q Consensus 177 ~a~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 252 (526)
-+.-+ .+.|..++.. .+.+.+...+..|+.+-+.. +.+.|..+ +...-.+.+...+..|+.+-+.-++
T Consensus 110 ~v~~L----l~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 110 TVKLF----VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp HHHHH----HHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHH----HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 33333 3334333322 11234444455565543333 33334222 1112233444445566666555555
Q ss_pred h
Q 009782 253 D 253 (526)
Q Consensus 253 ~ 253 (526)
+
T Consensus 182 ~ 182 (285)
T 3kea_A 182 D 182 (285)
T ss_dssp H
T ss_pred H
Confidence 4
No 287
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=62.69 E-value=20 Score=32.63 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=10.6
Q ss_pred HHHHHhcCChHHHHHHhcc
Q 009782 334 IVVYSKDGKLDQACWLFDH 352 (526)
Q Consensus 334 ~~~~~~~g~~~~A~~~~~~ 352 (526)
+...+..|+.+-+..+++.
T Consensus 177 L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3344456666666666653
No 288
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=62.15 E-value=21 Score=27.33 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=7.9
Q ss_pred HHhcCCHHHHHHHHhh
Q 009782 239 YAKCGDIVKARTVFDR 254 (526)
Q Consensus 239 ~~~~g~~~~A~~~~~~ 254 (526)
.+..|+.+-+.-+++.
T Consensus 108 A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 108 AVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHTCHHHHHHHHTT
T ss_pred HHHhChHHHHHHHHhc
Confidence 3445555555544444
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.06 E-value=74 Score=27.54 Aligned_cols=172 Identities=9% Similarity=-0.056 Sum_probs=88.7
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCCh---hHHHHHHHHHHhcCChhHHHHHHhccc
Q 009782 77 QDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK---GISSKLLRLYATFGLIDEAHQVFDQMS 153 (526)
Q Consensus 77 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~ 153 (526)
++++.+.+.|..++...-.+.+...+..|+.+-+..++ +.|..++. .-. +-+...+..|..+-+.-+++.-.
T Consensus 45 ~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga 119 (285)
T 3kea_A 45 RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGN-TALYYAVDSGNMQTVKLFVKKNW 119 (285)
T ss_dssp HHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHHCG
T ss_pred HHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCC-cHHHHHHHcCCHHHHHHHHhcCC
Confidence 34455556666554433344556666778877555554 44544432 222 23444567788887777776522
Q ss_pred cCC-CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 009782 154 NRT-AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV 231 (526)
Q Consensus 154 ~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 231 (526)
..+ .+...|.+.+...+..|+.+ +++.+.+.|..+... .-.+.+...+..|+.+-+.-+++.-..... .|..-
T Consensus 120 ~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g 194 (285)
T 3kea_A 120 RLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLL 194 (285)
T ss_dssp GGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCB
T ss_pred CCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCC
Confidence 211 11122345555566677754 444455555443222 445566666778888877666655433221 11111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGNK 258 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 258 (526)
.+..+...+..|+.+-+.-+++.-..+
T Consensus 195 ~t~~L~~A~~~~~~~~v~~Ll~~gad~ 221 (285)
T 3kea_A 195 FIPDIKLAIDNKDIEMLQALFKYDINI 221 (285)
T ss_dssp CCTTHHHHHHHTCHHHHHHHTTSCBCS
T ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 122234445667766555555543333
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=61.39 E-value=87 Score=27.70 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=35.1
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCCh---hHHHHHHHhcCCc----hHHHHHHHHHHH
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDV---VSWNSIIHAHSKD----HEALIYFEQMER 383 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~----~~a~~~~~~m~~ 383 (526)
...++.-|...|+.++|...++++..|.. .....+-.+..+. +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 35678889999999999999999987542 1222233334333 335666666654
No 291
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.72 E-value=67 Score=26.13 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=78.6
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 009782 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202 (526)
Q Consensus 123 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 202 (526)
.++..+-...+..+++.|..+....+.+.+.+.++ ..-...+.++.+.++. .+...+..+.. .+|...-...+.
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~--~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDA--WVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCH--HHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCH--HHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 34566666666677776664444444444443332 4444555666666653 33333333332 245555556666
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHH
Q 009782 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI 282 (526)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 282 (526)
++...|+.+....+ ..+.+ .++..+-...+.++.+.|+.+....+...+..++...-...+.++.+.+. .++...
T Consensus 104 aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~ 178 (211)
T 3ltm_A 104 ALGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAA 178 (211)
T ss_dssp HHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHH
T ss_pred HHHHhCcHHHHHHH-HHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHH
Confidence 66666664333222 22321 44555555566666666664433334444444555555555555655554 334444
Q ss_pred HHHHHH
Q 009782 283 FRGMIL 288 (526)
Q Consensus 283 ~~~m~~ 288 (526)
+..+.+
T Consensus 179 L~~~l~ 184 (211)
T 3ltm_A 179 MEKLAE 184 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 292
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=60.57 E-value=57 Score=26.85 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=25.1
Q ss_pred HHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009782 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471 (526)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 471 (526)
.+-.|.+.|.+++|.+++++.++..|+..-+..-+....+
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 3445777888888888887777766665544444433333
No 293
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.54 E-value=1.1e+02 Score=28.36 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=23.4
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 489 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.|-....+..+...+.- ..+++...+-+|...|
T Consensus 312 ~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 312 EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTT
T ss_pred HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 46666667777777654 6778888888877665
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.42 E-value=65 Score=25.93 Aligned_cols=144 Identities=11% Similarity=0.090 Sum_probs=82.6
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHH
Q 009782 89 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168 (526)
Q Consensus 89 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 168 (526)
++...-...+.++.+.+..+....+.+.+ . .++..+....+.+++..|..+....+.+.+.+.++ ..-...+.+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~--~vr~~a~~a 99 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDG--WVRQSAAVA 99 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSH--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCH--HHHHHHHHH
Confidence 46666667777777776644444444333 2 45666666777777777776555555554543333 555666677
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 009782 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 246 (526)
+.+.++.+ +...+..+.. .+|...-...+.++...|+.+. ...+..+.+ .++..+-...+.++.+.|+.+
T Consensus 100 L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 100 LGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCSHH
T ss_pred HHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCchh
Confidence 77777653 3444444443 3565566666777776666443 333333332 345566666677777776643
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.55 E-value=33 Score=27.04 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 009782 373 EALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 425 (526)
++.++|..|..+|+--.. ..|......+...|++.+|.++|+.-.+. +-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 356666777666665443 35555555666667777777777766665 55553
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.16 E-value=47 Score=28.04 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=38.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCC----CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009782 165 LISGYAELGEYEDAIALYFQMEEE--GVEP----DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238 (526)
Q Consensus 165 li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 238 (526)
-++.+....++++|.+++++..+. +.++ +.......++.-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 355666677777777777665432 2221 1111122222222222222223333333 11 3333444445556
Q ss_pred HHhcCCHHHHHHHHhh
Q 009782 239 YAKCGDIVKARTVFDR 254 (526)
Q Consensus 239 ~~~~g~~~~A~~~~~~ 254 (526)
+.+.|+-++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 6666666666666544
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.55 E-value=57 Score=27.17 Aligned_cols=52 Identities=8% Similarity=0.148 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 009782 372 HEALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 424 (526)
+++.++|..|..+|+--.. ..|......+...|++.+|.++|+.-.++ +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 4566666677666665443 35555666666667777777777766665 4444
No 298
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.28 E-value=54 Score=27.22 Aligned_cols=139 Identities=9% Similarity=-0.086 Sum_probs=68.5
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHccCChHHHHHHHHHHhhhccCCChh--HHHHHHHHHHhcCCh
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTET--FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG--ISSKLLRLYATFGLI 142 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~ 142 (526)
+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++.. .-.+.+...+..|..
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 92 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLACEHRSP 92 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence 456777777777777766665554321 12344445566776544 4444555444321 112334445667888
Q ss_pred hHHHHHHhccccC--CC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcch---HHHHHHHHhccCChHHHH
Q 009782 143 DEAHQVFDQMSNR--TA---FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT---FPRVLKACAGLGLIRVGE 214 (526)
Q Consensus 143 ~~a~~~~~~~~~~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~a~ 214 (526)
+-+..+++..... ++ +...++. +...+..|+. ++++.+.+.|..++... -.+.+...+..|+.+-+.
T Consensus 93 ~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 167 (241)
T 1k1a_A 93 TCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167 (241)
T ss_dssp HHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHH
Confidence 8777777765421 11 1111222 3333444554 34445555555544322 223344444556654433
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.58 E-value=83 Score=33.24 Aligned_cols=106 Identities=10% Similarity=-0.049 Sum_probs=70.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc-CCCCC----------------
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM-EFEAS---------------- 458 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~---------------- 458 (526)
++..|...|..+-+.++.. -.+.++..--.+..+|...|++++|.+.|.++- ++..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 6667777788776655332 233454444567888999999999999995543 22110
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCcc----hHHHHHHHHHhcC
Q 009782 459 -------PVVWGALLYACYLHGNVCMGETAAQKLFE-LEPDNEH----NFELLIKIYGNAG 507 (526)
Q Consensus 459 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~g 507 (526)
...|..++..+-+.+-++.+.++.+.+++ ..++|+. .|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 12567778888889999999999999887 3455443 4556666665544
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=55.77 E-value=39 Score=27.20 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=8.8
Q ss_pred HHHhcCChhHHHHHHh
Q 009782 135 LYATFGLIDEAHQVFD 150 (526)
Q Consensus 135 ~~~~~g~~~~a~~~~~ 150 (526)
..+..|..+-+..+++
T Consensus 78 ~A~~~~~~~~~~~Ll~ 93 (201)
T 3hra_A 78 YAGAQGRTEILAYMLK 93 (201)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3345566666655553
No 301
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=52.82 E-value=95 Score=25.47 Aligned_cols=147 Identities=10% Similarity=-0.037 Sum_probs=63.9
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC-CcccHHHHHHHHHhcCChH
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA-FAFPWNSLISGYAELGEYE 176 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~ 176 (526)
+...++.|+.+....+++.-...-...+..-.+ .+...+..|+.+-+..+++.-...+. +...++. +...+..|+.+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~ 87 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP-LHIAASAGXDE 87 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCH-HHHHHHcCHHH
Confidence 444556677776666665433211122222222 33344556666666666554211111 1111222 23333445543
Q ss_pred HHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHH
Q 009782 177 DAIALYFQMEEEGVEPDQFT--FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVF 252 (526)
Q Consensus 177 ~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 252 (526)
+++.+.+.|..++... -.+.+...+..|+.+.+.. +.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 88 ----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 88 ----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM----LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp ----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred ----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 4444445554443321 1123334445566554433 334454433211 112344445566766666666
Q ss_pred hh
Q 009782 253 DR 254 (526)
Q Consensus 253 ~~ 254 (526)
+.
T Consensus 160 ~~ 161 (231)
T 3aji_A 160 FY 161 (231)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.18 E-value=63 Score=27.25 Aligned_cols=89 Identities=13% Similarity=0.062 Sum_probs=48.3
Q ss_pred HHHHHHccCChHHHHHHHHHHhhh--ccCC----ChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHH
Q 009782 97 LLETCYQLKAVEHGIKLHRLIPTN--LLRK----NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA 170 (526)
Q Consensus 97 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 170 (526)
-++.+...+++++|.+++++..+. +.+. ........+..-.....-.-+..+.+.+.. ...+..-...+..+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 355677788899999888877642 2221 112222333333333333444444444433 333344555667777
Q ss_pred hcCChHHHHHHHHHHH
Q 009782 171 ELGEYEDAIALYFQME 186 (526)
Q Consensus 171 ~~~~~~~a~~~~~~m~ 186 (526)
+.|+.++|.++|-+..
T Consensus 103 rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNR 118 (235)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHH
Confidence 7777777777775543
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=51.95 E-value=89 Score=24.90 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=26.8
Q ss_pred HHHHhcCCHHHHHHHHhhc-CC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc
Q 009782 237 DMYAKCGDIVKARTVFDRI-GN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294 (526)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 294 (526)
...++.|+.+-+..+++.- .. .|..-++.+..+.........-.++++.+.+.|..++
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 3445566666666666554 22 2333333444333322223333455555555555443
No 304
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=51.39 E-value=57 Score=31.28 Aligned_cols=76 Identities=12% Similarity=-0.017 Sum_probs=53.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc-CCCCCHHHHHHHHHHHHh
Q 009782 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM-EFEASPVVWGALLYACYL 471 (526)
Q Consensus 394 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~l~~~~~~ 471 (526)
..|.+.......++.|...|..+... .+-+...|+.|.-.....|+.-+|.-.|.+.+ -..|-+.+..++...+.+
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~--~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHh--CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 33444444456678899999988764 34467788888888888888888877776665 445667777777776654
No 305
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=50.64 E-value=92 Score=24.68 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=27.6
Q ss_pred HHHHccCCCCcchHH--HHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009782 483 QKLFELEPDNEHNFE--LLIKIYGNAGRLDDVERVERMLVDRGLE 525 (526)
Q Consensus 483 ~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 525 (526)
++-.+.-|. ..+|. ....-|...|-.++...+|..++++...
T Consensus 197 kkY~n~iPG-iGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 197 KKYMEHVPG-IGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHTSTTT-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhCCC-chhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 333444455 33333 3456677899999999999988877654
No 306
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.91 E-value=25 Score=29.92 Aligned_cols=50 Identities=10% Similarity=-0.053 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhh-------HHHHHHHHH--ccCChHHHHHHHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTET-------FASLLETCY--QLKAVEHGIKLHRLI 117 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 117 (526)
+.|+.+....+++.+.+.|..++... .+.+..+.. +.|+.+-+..+++.-
T Consensus 14 ~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 44555555556666666555554332 233333332 456666666655543
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=49.37 E-value=1e+02 Score=25.35 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=10.9
Q ss_pred HHHHHHhcCChhHHHHHHhc
Q 009782 132 LLRLYATFGLIDEAHQVFDQ 151 (526)
Q Consensus 132 ll~~~~~~g~~~~a~~~~~~ 151 (526)
.+...+..|+.+-+.-+++.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHc
Confidence 34444556666655555554
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.79 E-value=28 Score=29.68 Aligned_cols=53 Identities=11% Similarity=-0.144 Sum_probs=25.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCcch-------HHHHHHHHh--ccCChHHHHHHHHHH
Q 009782 168 GYAELGEYEDAIALYFQMEEEGVEPDQFT-------FPRVLKACA--GLGLIRVGEKVHLDA 220 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-------~~~ll~~~~--~~g~~~~a~~~~~~~ 220 (526)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++..
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34455666665556665555554444222 222332221 456666555555543
No 309
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=48.32 E-value=1.1e+02 Score=25.00 Aligned_cols=174 Identities=11% Similarity=0.007 Sum_probs=81.1
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCCh---hHHHHHHHHHHhcCCh
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK---GISSKLLRLYATFGLI 142 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~ 142 (526)
.++.|+.+.+..+++.-...-...+....+.+ ...+..|+.+-... +.+.|..++. .-+ +.+...+..|..
T Consensus 13 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~ 86 (231)
T 3aji_A 13 LAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEIVEF----LLQLGVPVNDKDDAGW-SPLHIAASAGXD 86 (231)
T ss_dssp HHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHHHHHH----HHHTTCCSCCCCTTSC-CHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHHHHHH----HHHhCCCCCCcCCCCC-CHHHHHHHcCHH
Confidence 34567777766666543221112233333333 34445666654444 4444544432 222 234445567787
Q ss_pred hHHHHHHhccccCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCChHHHHHHHHH
Q 009782 143 DEAHQVFDQMSNRTA-FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT--FPRVLKACAGLGLIRVGEKVHLD 219 (526)
Q Consensus 143 ~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~ 219 (526)
+-+..+++.-...+. +...+ +.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+.+..
T Consensus 87 ~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---- 157 (231)
T 3aji_A 87 EIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI---- 157 (231)
T ss_dssp HHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH----
T ss_pred HHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH----
Confidence 766666664322211 11112 2344445566655 4444455665555432 1233444556677654443
Q ss_pred HHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhh
Q 009782 220 AVRFGFGFDGFV--LNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 220 ~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
+.+.|..++... -.+-+...++.|+.+-+.-+++.
T Consensus 158 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 444555443211 11233344555665555555544
No 310
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=47.06 E-value=70 Score=30.67 Aligned_cols=77 Identities=9% Similarity=-0.058 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
...|++...-...++.|...|.++....|+. ..|+.|.......|+.-+|.-.|-+.+....+-+.+...|...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3445555556677888999998888888866 8888888888888888888888888887666667778888877765
No 311
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=45.18 E-value=2.9e+02 Score=28.94 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
|...+.++.+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556667777778888888887754
No 312
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.32 E-value=92 Score=23.93 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=43.4
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChh
Q 009782 78 DLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143 (526)
Q Consensus 78 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 143 (526)
+.+.+.+.|.+++ ..-..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 14 ~~~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 14 LRMSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3445667888754 3444566666666778889999999988776666666556677777777543
No 313
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.30 E-value=68 Score=21.36 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=41.4
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCCh
Q 009782 80 ESSVQNGITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142 (526)
Q Consensus 80 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 142 (526)
+.+.+.|.+.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34667787766544 45666666654 5667788888887766556666666677777776644
No 314
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.80 E-value=1.4e+02 Score=24.68 Aligned_cols=89 Identities=9% Similarity=0.146 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHH---HHc--cC--------------ChHHHHHHHHHHhhhccCCChh-
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLET---CYQ--LK--------------AVEHGIKLHRLIPTNLLRKNKG- 127 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~--~~--------------~~~~a~~~~~~~~~~~~~~~~~- 127 (526)
+.++|.+...+++.+...++...+.. ...+.. +.| .| -++.|+.+|+.+.+-.--++..
T Consensus 31 r~~dFrq~rdi~eall~~~l~~~~~~-~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e~~l~~~l~ 109 (235)
T 3bu8_A 31 RYGDFRQIRDIMQALLVRPLGKEHTV-SRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVV 109 (235)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCCCHHH-HHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cHHHHHHHHHHHHHHHhCcccccccc-hhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHhhcCcHHHH
Confidence 45677777777777776665544432 222222 221 11 1455666666665432111110
Q ss_pred ------HHHHHHHHHHhcCChhHHHHHHhccccCCC
Q 009782 128 ------ISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157 (526)
Q Consensus 128 ------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 157 (526)
+--..+..|.+.|.+++|.++|++....++
T Consensus 110 e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~ 145 (235)
T 3bu8_A 110 ESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP 145 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence 111233445666666666666666655443
No 315
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.22 E-value=1e+02 Score=28.66 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=30.2
Q ss_pred HHHHHhhCCCCCChhh--HHHHHHHHHccCChHHHHHHHHHHhhhccCCChh--HHHHHHHHHHhcCChhHHHHHHhc
Q 009782 78 DLESSVQNGITVQTET--FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG--ISSKLLRLYATFGLIDEAHQVFDQ 151 (526)
Q Consensus 78 ~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~ 151 (526)
+++.+.+.|..++... ..+.+...+..|+.+-+..+++ .|..++.. .-.+.+...+..|..+-+.-+++.
T Consensus 29 ~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhC
Confidence 3444444555443221 1233444455566554444443 33322211 111233444556666655555554
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.13 E-value=82 Score=24.05 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=42.0
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCCh
Q 009782 80 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142 (526)
Q Consensus 80 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 142 (526)
+.+.+.|.++++. -..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4566778875544 3445556666667778889999988876556666655667777777654
No 317
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.62 E-value=1.4e+02 Score=24.22 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=28.8
Q ss_pred hhHHHHHHhccccCCCCc------ccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009782 142 IDEAHQVFDQMSNRTAFA------FPWNSLISGYAELGEYEDAIALYFQMEE 187 (526)
Q Consensus 142 ~~~a~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 187 (526)
++.|+.+|+.+....+.. ..--..+..|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 567777777776554321 1122345677788888888888877544
No 318
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=41.23 E-value=1.9e+02 Score=25.54 Aligned_cols=209 Identities=11% Similarity=0.103 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCChhHHHHHHhccccCCC-Ccc-cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHh
Q 009782 130 SKLLRLYATFGLIDEAHQVFDQMSNRTA-FAF-PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT--FPRVLKACA 205 (526)
Q Consensus 130 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~ 205 (526)
++.+...++.|+++-+..+++.=.+.+. +.. -++. +...+..|+.+ +.+.+.+.|..|+... ....+....
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~Tp-Lh~A~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCH-HHHHHHcCCHH----HHHHHHHcCCchhhhccCCCchhHHHH
Confidence 4455556788999888888875322111 111 1233 33445566654 4555566665554321 111122222
Q ss_pred ccCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc-------------ccHHHHHHH
Q 009782 206 GLGLIRVGEKVHLDAVRFGFGFDG---FVLNALVDMYAKCGDIVKARTVFDRIGNKDL-------------ISYNSMLTG 269 (526)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~li~~ 269 (526)
..+....... ....+..++. .-.+ -+...+..|..+-+..+++.-...+. .-.+.|. .
T Consensus 101 ~~~~~~~~~~----~~~~~~~~~~~d~~g~t-~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~-~ 174 (337)
T 4g8k_A 101 IAGSVKLLKL----FLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM-D 174 (337)
T ss_dssp HHTCHHHHHH----HHTTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH-H
T ss_pred hcccchhhHH----hhhccchhhhhccCCCC-HHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH-H
Confidence 2333332222 2223322211 1111 23344567777777666654332111 1122333 3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCcH---HHHHHHHHHh--hhhHHHHHHHHHHHHhCCCCchhH--HhHHHHHHHhcCC
Q 009782 270 YIHHGLLVEAFDIFRGMILNGFDPDP---VAISSILANA--SLLRIGAQVHGWVLRRGVEWDLCI--ANSLIVVYSKDGK 342 (526)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~--~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~ 342 (526)
.+..|+.+-+..+++ +.|..++. ...+.+..++ +.......+.+.+.+.|..++... -.+.+...+..|.
T Consensus 175 A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 175 AAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence 345566654444433 23433322 1111121111 222333445555666666554321 1223445566777
Q ss_pred hHHHHHHhcc
Q 009782 343 LDQACWLFDH 352 (526)
Q Consensus 343 ~~~A~~~~~~ 352 (526)
.+.+..+++.
T Consensus 252 ~~~v~~Ll~~ 261 (337)
T 4g8k_A 252 LGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHTS
T ss_pred hHHHHHHHHh
Confidence 7777766653
No 319
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.32 E-value=86 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
....++.-|...|+.++|.+.+ +.++
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl-~eL~ 34 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCL-KELE 34 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-HHhC
Confidence 3456778888888888888888 5555
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.22 E-value=43 Score=25.96 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCC--hHHHHHHHHHHHHcCC
Q 009782 129 SSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGE--YEDAIALYFQMEEEGV 190 (526)
Q Consensus 129 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~ 190 (526)
.+.++.-|...|+.++|.+.++++....... .++..+..++-+.++ .+.+..++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3456666667777777777777764321111 233344444444322 3445666666665543
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.31 E-value=42 Score=23.58 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=26.9
Q ss_pred CChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHH
Q 009782 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAI 179 (526)
Q Consensus 140 g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 179 (526)
...+.|.++++.++.++| .+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~--~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS--QALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT--THHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcCh--HHHHHHHHHHHHcCcHHHHH
Confidence 356778888888877777 67778888776666654443
No 322
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=39.28 E-value=1.4e+02 Score=23.67 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHhcCC-hHHHHHHHHhhcCCCCC
Q 009782 427 EHYACMVNLYGRAGL-IDEAYSMIVEKMEFEAS 458 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~ 458 (526)
....-++..+.+.|- ++.+..++ +.+...||
T Consensus 137 ~~~~K~~~~L~rrGF~~~~I~~vl-~~l~~~~~ 168 (177)
T 3e3v_A 137 NKQNKIKQSLLTKGFSYDIIDTII-QELDLIFD 168 (177)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH-HHHHHC--
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHCcCCCC
Confidence 344556666666664 33344444 44444443
No 323
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.72 E-value=3.1e+02 Score=27.36 Aligned_cols=80 Identities=9% Similarity=0.027 Sum_probs=47.6
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhc---cCCHH
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGV-LPDHLTFVSLLSACAH---LGSVK 407 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~---~~~~~ 407 (526)
....++.-.|++|.|.+++-.....+.+.+.+.+..+|-.... +.+..... .| ..-+..||..|.+ ..+..
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~~gLL~~~----~~lls~~~~~~-~lN~arLI~~Yt~~F~~td~~ 373 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASLKLFKID----SSTRLTKKPKR-DIRFANILANYTKSFRYSDPR 373 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHTTC----------------------CHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHHcCCccCC----CcccccCCCcc-cccHHHHHHHHHHHhhcCCHH
Confidence 4667788889999999988877545666666666666554431 11111100 11 2246677777764 57888
Q ss_pred HHHHHHHHH
Q 009782 408 VGERLFSVM 416 (526)
Q Consensus 408 ~a~~~~~~~ 416 (526)
+|.++|--+
T Consensus 374 ~Al~Y~~li 382 (661)
T 2qx5_A 374 VAVEYLVLI 382 (661)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHH
Confidence 898888776
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.27 E-value=1.7e+02 Score=26.20 Aligned_cols=25 Identities=8% Similarity=-0.121 Sum_probs=12.4
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCC
Q 009782 201 LKACAGLGLIRVGEKVHLDAVRFGF 225 (526)
Q Consensus 201 l~~~~~~g~~~~a~~~~~~~~~~g~ 225 (526)
+...+..|+.+-+..+++.....|.
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHhccccCC
Confidence 3344455666555555555444343
No 325
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=37.02 E-value=90 Score=23.16 Aligned_cols=48 Identities=6% Similarity=-0.018 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhC--CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 009782 72 LDSIIQDLESSVQN--GITV-QTETFASLLETCYQLKAVEHGIKLHRLIPT 119 (526)
Q Consensus 72 ~~~a~~~~~~m~~~--~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 119 (526)
+.+...+++.+... |+.+ |...+...+..+...++++++..++..+..
T Consensus 38 l~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~r 88 (124)
T 3vu7_H 38 FNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKR 88 (124)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 34444455555443 3332 555666666677778888888888776654
No 326
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.51 E-value=1.7e+02 Score=23.81 Aligned_cols=25 Identities=4% Similarity=-0.257 Sum_probs=13.3
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCC
Q 009782 201 LKACAGLGLIRVGEKVHLDAVRFGF 225 (526)
Q Consensus 201 l~~~~~~g~~~~a~~~~~~~~~~g~ 225 (526)
+...+..|+.+.+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3444455555555555555555553
No 327
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.18 E-value=1.3e+02 Score=28.82 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----ch--hHH-HHHHHHHHhcCChHHHHHHHHhhcCCCCC
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RV--EHY-ACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 458 (526)
...++.+++.|...+.++.|..+..+.. ++. +. ..| -.++..+.-.+++.+|.+.+..++...|.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 4578999999999999999999998873 222 21 222 34566777889999999998888876664
No 328
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=34.33 E-value=1.8e+02 Score=23.43 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=25.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 009782 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGF--VLNALVDMYAKCGDIVKARTVFDRIGN 257 (526)
Q Consensus 201 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~ 257 (526)
+...+..|+.+.+.. +.+.|..++.. .-.+-+...++.|+.+-+.-+++.-..
T Consensus 129 L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 183 (223)
T 2f8y_A 129 LHWAAAVNNVDAAVV----LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183 (223)
T ss_dssp HHHHHHTTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHH----HHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 344445566544433 33444433321 111233444566777766666665443
No 329
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.72 E-value=1.9e+02 Score=23.69 Aligned_cols=147 Identities=10% Similarity=-0.077 Sum_probs=66.5
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChh--HHHHHHHHHHhcCChhHHHHHHhccccCCC-CcccHHHHHHHHHhcCC
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKG--ISSKLLRLYATFGLIDEAHQVFDQMSNRTA-FAFPWNSLISGYAELGE 174 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 174 (526)
+...+..|+.+.... +.+.|..++.. .-.+.+...+..|+.+-+..+++.-...+. +.... +.+...+..|+
T Consensus 15 L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~ 89 (237)
T 3b7b_A 15 LHAAAEAGHVDICHM----LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGH 89 (237)
T ss_dssp HHHHHHHTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSC-CHHHHHHHTTC
T ss_pred HHHHHHcCcHHHHHH----HHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCC
Confidence 344455566654433 33444333321 111234444566777777666654322211 11112 23344445666
Q ss_pred hHHHHHHHHHHHHcC-CCCCcc--hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHH
Q 009782 175 YEDAIALYFQMEEEG-VEPDQF--TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF--VLNALVDMYAKCGDIVKAR 249 (526)
Q Consensus 175 ~~~a~~~~~~m~~~~-~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~ 249 (526)
.+ +++.+.+.| ..++.. .-.+.+...+..|+.+-+ +.+.+.|..++.. .-.+.+...+..|+.+-+.
T Consensus 90 ~~----~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 90 YE----VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV----KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp HH----HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HH----HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 54 344444444 222221 111234444556666544 4444556544322 1122344455677777776
Q ss_pred HHHhhcCC
Q 009782 250 TVFDRIGN 257 (526)
Q Consensus 250 ~~~~~~~~ 257 (526)
-+++.-..
T Consensus 162 ~Ll~~g~~ 169 (237)
T 3b7b_A 162 ILLAAKCD 169 (237)
T ss_dssp HHHTTTCC
T ss_pred HHHHcCCC
Confidence 66665443
No 330
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=33.49 E-value=71 Score=23.41 Aligned_cols=89 Identities=12% Similarity=0.101 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhh-hccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 009782 71 ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT-NLLRKNKGISSKLLRLYATFGLIDEAHQVF 149 (526)
Q Consensus 71 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 149 (526)
.+++|+.-+++.... .+|......+++.+-. -++.+.++.....+ .|+ .+.++...++...+.|-++....++
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~~~w~ 76 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPEDPFWL 76 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcHHHHH
Confidence 345666666666543 3455555566655543 25556665555544 454 4556666777777777655443333
Q ss_pred hccccCCCCcccHHHH
Q 009782 150 DQMSNRTAFAFPWNSL 165 (526)
Q Consensus 150 ~~~~~~~~~~~~~~~l 165 (526)
+....++..+.+|+..
T Consensus 77 ~m~~~RN~~vH~Y~~~ 92 (119)
T 1wty_A 77 EMLELRNLTNHTYDEA 92 (119)
T ss_dssp HHHHHHHHGGGTTSHH
T ss_pred HHHHHhhHhcccccHH
Confidence 3333333333455443
No 331
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.97 E-value=1.7e+02 Score=22.59 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCcHH
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGL--LVEAFDIFRGMILNGFDPDPV 296 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 296 (526)
.+.++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45677888888999999999998876632 233344444444322 345677888887777655444
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.91 E-value=1e+02 Score=23.19 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=41.8
Q ss_pred HHhhCCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChh
Q 009782 81 SSVQNGITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143 (526)
Q Consensus 81 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 143 (526)
.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 466778876544 344566666665 67789999999988766666666556677777776543
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.83 E-value=1e+02 Score=23.70 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=43.9
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChh
Q 009782 79 LESSVQNGITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143 (526)
Q Consensus 79 ~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 143 (526)
.+.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 5 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 5 NQALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345667888865443 44556666665 67789999999988766666666666677777777544
No 334
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.40 E-value=3.8e+02 Score=28.22 Aligned_cols=130 Identities=10% Similarity=-0.033 Sum_probs=70.5
Q ss_pred HHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC-CCCcccHHHHHHHHHhcCCh
Q 009782 97 LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR-TAFAFPWNSLISGYAELGEY 175 (526)
Q Consensus 97 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~ 175 (526)
++..|...+.++-|.++.... +.++..--.+.++|...|++++|...|++.... ......... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~----------~ 880 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV----------L 880 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG----------G
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc----------h
Confidence 566666777777666544333 233333334667778889999999999876422 110000000 0
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcC
Q 009782 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG----FVLNALVDMYAKCG 243 (526)
Q Consensus 176 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g 243 (526)
.....++..... ......-|..+++.+.+.+-++.+.++-+..++.--..|. ..|+.+.++.+..|
T Consensus 881 ~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 REFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011111111110 0111225778888888888888888888877764322232 35666777766544
No 335
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.38 E-value=50 Score=25.13 Aligned_cols=146 Identities=12% Similarity=-0.005 Sum_probs=58.3
Q ss_pred HHHHHccCChHHHHHHHHHHhhhcc-CCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC-CcccHHHHHHHHHhcCCh
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLL-RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA-FAFPWNSLISGYAELGEY 175 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 175 (526)
+...++.|+.+.+..+++. ....+ ..+..-.+ .+.. +..|+.+-+..+++.-...+. +...++ .+...+..|+.
T Consensus 6 L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t-~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~ 81 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKT-ALQV-MMFGSTAIALELLKQGASPNVQDTSGTS-PVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCC-HHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCc-HHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHHcCcH
Confidence 3344455666666666655 21000 11111122 2233 555666655555544221111 111122 23333444554
Q ss_pred HHHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 009782 176 EDAIALYFQMEEEGVEPDQFT--FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253 (526)
Q Consensus 176 ~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 253 (526)
+ +++.+.+.|..++... -.+.+...+..|+.+-+.-+++. .... ..|..-. +-+...++.|+.+-+.-+++
T Consensus 82 ~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~-t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 82 D----TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGL-TPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp H----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSC-CHHHHHHHSCCHHHHHHHHT
T ss_pred H----HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCC-CHHHHHHHcCcHHHHHHHHh
Confidence 3 3333344444433221 12233444456666655555443 1111 1111111 23334456666666555544
Q ss_pred h
Q 009782 254 R 254 (526)
Q Consensus 254 ~ 254 (526)
.
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 3
No 336
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.31 E-value=2e+02 Score=23.36 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=26.1
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 009782 237 DMYAKCGDIVKARTVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291 (526)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 291 (526)
...+..|+.+-+.-+++.-... |..-.+ .+...+..|+.+-+..+++.+.+.|.
T Consensus 126 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNT-VLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3334455555555555443222 211222 23334556666666666666666654
No 337
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.13 E-value=2.4e+02 Score=24.02 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=29.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
++...-...+.++.+.|+.. +...+.+.+. .|+ .....+.++.+.|+ +.+...+..+++-.++
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKR-VLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPVLDTMLYKFDD 266 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGG-GHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHHHHhCCHh-hHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcCCC
Confidence 44445555556666666433 3333324443 233 22334455555555 3455555555554443
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.07 E-value=1.4e+02 Score=23.20 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=46.3
Q ss_pred HHHHHHH-HHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhh--ccCCChhHHHHHHHHHHhcCCh
Q 009782 73 DSIIQDL-ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN--LLRKNKGISSKLLRLYATFGLI 142 (526)
Q Consensus 73 ~~a~~~~-~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~ 142 (526)
+.+++-+ +.+.+.|.+++. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 4444433 344566888644 4556677777777888899999999877 6566665555557777777754
No 339
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=31.70 E-value=97 Score=26.41 Aligned_cols=17 Identities=12% Similarity=0.427 Sum_probs=8.2
Q ss_pred HHHHhcCChHHHHHHhc
Q 009782 335 VVYSKDGKLDQACWLFD 351 (526)
Q Consensus 335 ~~~~~~g~~~~A~~~~~ 351 (526)
...++.|+.+-+.-+++
T Consensus 238 ~~A~~~g~~~iv~~Ll~ 254 (273)
T 2pnn_A 238 ALAASSGKIGVLAYILQ 254 (273)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHH
Confidence 33445555555544443
No 340
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.69 E-value=65 Score=22.58 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=29.9
Q ss_pred CCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHH
Q 009782 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280 (526)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 280 (526)
...++|.++++.++..+..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767665554
No 341
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.59 E-value=2.8e+02 Score=24.65 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=28.0
Q ss_pred hcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 452 KMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 452 ~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
..+..|.- .++...+..+.+.+++..|..+.++++++.|.
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 33444433 45666677778888888888888888888875
No 342
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.93 E-value=90 Score=23.82 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=40.2
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCCh
Q 009782 79 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142 (526)
Q Consensus 79 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 142 (526)
.+.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 7 ~~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34566778886554 334455555555 668888999888776556665555557777776644
No 343
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.26 E-value=2.2e+02 Score=23.15 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=37.8
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-----hHHHHHHHHHHHHhCC
Q 009782 162 WNSLISGYAE---LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-----IRVGEKVHLDAVRFGF 225 (526)
Q Consensus 162 ~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~g~ 225 (526)
..-+|+++.+ ..+.+.|+-.+.+|.+.| .|....-..++-+.-.-|. +..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4445566544 578888888888888888 5555555555555554443 2334444555555554
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.98 E-value=1.2e+02 Score=20.03 Aligned_cols=60 Identities=8% Similarity=0.106 Sum_probs=34.7
Q ss_pred HHHHcCCCCCcchHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 184 QMEEEGVEPDQFTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 184 ~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
.+.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4555666655433 34555555543 455667777777666555555555556666665553
No 345
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.56 E-value=62 Score=27.33 Aligned_cols=28 Identities=14% Similarity=-0.108 Sum_probs=17.0
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCC
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKN 125 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 125 (526)
+...++.|+.+....+++.+.+.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 3444566777776667776666665443
No 346
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.48 E-value=1.2e+02 Score=20.88 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=22.7
Q ss_pred cCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCCh
Q 009782 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEY 175 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 175 (526)
....++|..+++.+..+++ .+|..++.++...+..
T Consensus 49 ~t~~~kar~Lld~l~~kG~--~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDN--DSYVSFYNALLHEGYK 83 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHHHHcCH--HHHHHHHHHHHHcCHH
Confidence 4556667777777766666 5666677666665543
No 347
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=29.46 E-value=2.9e+02 Score=24.19 Aligned_cols=248 Identities=15% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHhccccC-CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHH--HHHHHHhc
Q 009782 130 SKLLRLYATFGLIDEAHQVFDQMSNR-TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP--RVLKACAG 206 (526)
Q Consensus 130 ~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~ 206 (526)
..-+...++.|+.+....++...... +.....-.+.+...+..|+ .++++.+.+.|..++..... +.+...+.
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR----VRIVQLLLQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCCHHHHHHHHhhcCCCCccc----------------------
Q 009782 207 LGLIRVGEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKARTVFDRIGNKDLIS---------------------- 262 (526)
Q Consensus 207 ~g~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------- 262 (526)
.|+.+ +.+.+.+.|..++..... +.+...+..|+.+-+..+++.-..++...
T Consensus 101 ~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~ 176 (351)
T 3utm_A 101 YGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176 (351)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred CCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Q ss_pred -HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHH--hHHHHHHHh
Q 009782 263 -YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA--NSLIVVYSK 339 (526)
Q Consensus 263 -~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~ 339 (526)
...-+...+..++.+....++..-......+....-...+..........++.+.+.+.|..++.... .+.+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 256 (351)
T 3utm_A 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256 (351)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH
Q ss_pred cCChHHHHHHhccCCC---CChhHHHHHHHh--cCCchHHHHHHHHHHHCCCCCC
Q 009782 340 DGKLDQACWLFDHMPQ---KDVVSWNSIIHA--HSKDHEALIYFEQMERDGVLPD 389 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~--~~~~~~a~~~~~~m~~~~~~p~ 389 (526)
.|+.+-+.-+++.-.. .|....+.|..+ .++ .++.+.+.+.|..|+
T Consensus 257 ~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~gad~~ 307 (351)
T 3utm_A 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH----LQTCRLLLSYGSDPS 307 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCTT
T ss_pred cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHHcCCCCC
No 348
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=29.05 E-value=1.6e+02 Score=22.45 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=7.6
Q ss_pred HHhcCCHHHHHHHHhh
Q 009782 239 YAKCGDIVKARTVFDR 254 (526)
Q Consensus 239 ~~~~g~~~~A~~~~~~ 254 (526)
.+..|+.+-+.-+++.
T Consensus 115 A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 115 AAAKGKYEICKLLLQH 130 (165)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555544444443
No 349
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.79 E-value=1.7e+02 Score=22.36 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=36.2
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 183 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3455666665443 234555555555667788888888777655566555556666666654
No 350
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.33 E-value=1.7e+02 Score=21.88 Aligned_cols=60 Identities=10% Similarity=0.086 Sum_probs=35.5
Q ss_pred HHHHcCCCCCcchHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 184 QMEEEGVEPDQFTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 184 ~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3555666655433 34555555555 566778888888777655565555555566665553
No 351
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.17 E-value=2.4e+02 Score=22.92 Aligned_cols=62 Identities=6% Similarity=0.038 Sum_probs=41.8
Q ss_pred cHHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhh--------hHHHHHHHHHHHHhCCC
Q 009782 262 SYNSMLTGYI---HHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL--------LRIGAQVHGWVLRRGVE 324 (526)
Q Consensus 262 ~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--------~~~a~~~~~~~~~~~~~ 324 (526)
....+|+++. +..+.+.|+-.+.+|++.| .|....-..++.+..+ +..+...++.....|.+
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4445666664 4689999999999999999 8877777777766632 33444444545555543
No 352
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.96 E-value=1.3e+02 Score=28.99 Aligned_cols=22 Identities=14% Similarity=-0.032 Sum_probs=11.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 009782 499 LIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 499 l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+++++.-.++|.+|.+.+....
T Consensus 276 ~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 276 LSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 4555555555555555555443
No 353
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.75 E-value=1.8e+02 Score=22.30 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=39.2
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 009782 183 FQMEEEGVEPDQFTFPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245 (526)
Q Consensus 183 ~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 245 (526)
+.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34566677665443 34555555555 5667888888888776666666655566666666643
No 354
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.68 E-value=1.7e+02 Score=22.13 Aligned_cols=61 Identities=8% Similarity=-0.034 Sum_probs=34.2
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 183 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34555666655432 33445554455556677777777666555555555555555655553
No 355
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.36 E-value=1.9e+02 Score=21.45 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCcHH
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGL--LVEAFDIFRGMILNGFDPDPV 296 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 296 (526)
.+.++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45677888888999999999999876632 233334444444432 356777888888777655544
No 356
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.35 E-value=3.5e+02 Score=24.48 Aligned_cols=196 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHhcCCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009782 328 CIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHAHSKD----HEALIYFEQMERDGVLPDHLTFVSLLSAC 400 (526)
Q Consensus 328 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 400 (526)
.....++.-|...|+.++|...++++.. .....-..+-.++-+. +.+-.++..+. .++-+.......+...+
T Consensus 55 k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll 133 (358)
T 3eiq_C 55 KTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLL 133 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Q ss_pred hccCC--------HHHHHHHHHHHHHhcCCCCc--------------hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC
Q 009782 401 AHLGS--------VKVGERLFSVMVEKYGISPR--------------VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458 (526)
Q Consensus 401 ~~~~~--------~~~a~~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 458 (526)
....+ ++..-.++..+.....++|. ..+...--..+......+...++|-..-+..|.
T Consensus 134 e~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~v 213 (358)
T 3eiq_C 134 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPV 213 (358)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCH
T ss_pred HhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccH
Q ss_pred H---HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC--ChHHHHHHHHHHHhCCC
Q 009782 459 P---VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG--RLDDVERVERMLVDRGL 524 (526)
Q Consensus 459 ~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~ 524 (526)
. .....++.-|...|+.++|.+.++++..-.-........+..++-+.+ .-+...+++..+...|+
T Consensus 214 eelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 214 NHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
No 357
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=27.32 E-value=1.4e+02 Score=22.79 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHhhCC-------CCC---ChhhHHHHHHHHHccCChHHHHHHHHHHhh-hccCC---ChhHHHHHH
Q 009782 68 KLQALDSIIQDLESSVQNG-------ITV---QTETFASLLETCYQLKAVEHGIKLHRLIPT-NLLRK---NKGISSKLL 133 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~-------~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~ll 133 (526)
+...+.+|+.-+++..... ..+ +......++..+-. -++.+.++.....+ .|+.+ ++.++...+
T Consensus 7 ~~~~~~kal~~L~e~~~~~~~~~~~~~~~~~~~~~~~dg~iq~fe~--t~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~ 84 (146)
T 1jog_A 7 NLNVLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAGAIQKFEF--VYELSLKMMKRQLQQDAINTDDIGAYGFKDIL 84 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCSCCCTTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccccCCcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCCccccCCCCHHHHH
Confidence 3456666666666555431 111 22233334433332 24555555555544 44433 356667777
Q ss_pred HHHHhcCChhHHHHHHhccccCCCCcccHHH
Q 009782 134 RLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164 (526)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 164 (526)
+...+.|-++....+++....++..+.+|+.
T Consensus 85 r~a~~~GlI~d~~~w~~m~~~RN~tvH~Y~e 115 (146)
T 1jog_A 85 REALRFGLIGDMSKWVAYRDMRNITSHTYDQ 115 (146)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHTTGGGTTSH
T ss_pred HHHHHcCCCCcHHHHHHHHHHhhHhcccccH
Confidence 7777777766554443433444555556654
No 358
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.15 E-value=2.2e+02 Score=22.12 Aligned_cols=69 Identities=6% Similarity=0.045 Sum_probs=45.6
Q ss_pred HHHHHHHH-HHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCH
Q 009782 176 EDAIALYF-QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF--GFGFDGFVLNALVDMYAKCGDI 245 (526)
Q Consensus 176 ~~a~~~~~-~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~ 245 (526)
+.+++-+. .+.+.|++++. --..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 44444443 34556777654 3456677777777778888999988887 6666666655566777777643
No 359
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=26.52 E-value=1.9e+02 Score=22.10 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=6.9
Q ss_pred HHhcCChhHHHHHHh
Q 009782 136 YATFGLIDEAHQVFD 150 (526)
Q Consensus 136 ~~~~g~~~~a~~~~~ 150 (526)
.+..|..+-+.-+++
T Consensus 76 A~~~~~~~~v~~Ll~ 90 (172)
T 3v30_A 76 ASTGGYTDIVGLLLE 90 (172)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHH
Confidence 344455544444443
No 360
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=26.25 E-value=2.2e+02 Score=21.76 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=7.2
Q ss_pred HHhcCChhHHHHHHh
Q 009782 136 YATFGLIDEAHQVFD 150 (526)
Q Consensus 136 ~~~~g~~~~a~~~~~ 150 (526)
.+..|+.+-+..+++
T Consensus 54 A~~~~~~~~v~~Ll~ 68 (169)
T 2y1l_E 54 AAFNGHLEIVEVLLK 68 (169)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344455554444444
No 361
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=26.19 E-value=2.6e+02 Score=22.56 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=23.6
Q ss_pred HHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 009782 99 ETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152 (526)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 152 (526)
...++.|+.+....+++.-.......+..-.+ .+...+..|+.+-+..+++.-
T Consensus 7 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~ 59 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHSKPSLLLQKDQDGRI-PLHWSVSFQAHEITSFLLSKM 59 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHHhcCccccccCCCCCCC-HHHHHHHcCCHHHHHHHHhcc
Confidence 33445566665555554432211112222222 233344556666666555554
No 362
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.95 E-value=74 Score=19.92 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 009782 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204 (526)
Q Consensus 175 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 204 (526)
.++|.+.|.+|++..-.++.-||...++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 357777787777654445566787777766
No 363
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.41 E-value=1.7e+02 Score=20.11 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHH
Q 009782 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEA 279 (526)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 279 (526)
....++|.++++.+...+..+|..++.++...+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 46677788888888877777888888877777654433
No 364
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.76 E-value=2.8e+02 Score=22.50 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=33.6
Q ss_pred HHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 009782 263 YNSMLTGYI---HHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305 (526)
Q Consensus 263 ~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 305 (526)
...+|+++. +.++.+.|+-.+.+|++.|-.|....-..++.+.
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344566664 4689999999999999999888887777777666
No 365
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.68 E-value=2.5e+02 Score=22.78 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=27.9
Q ss_pred HHHHHHH---hcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC
Q 009782 164 SLISGYA---ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208 (526)
Q Consensus 164 ~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 208 (526)
-+|+++. +..+.+.|+-.+.+|++.|-.|....-..++-+.-.-|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455554 35778888888888888776665544444444444333
No 366
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.65 E-value=99 Score=21.40 Aligned_cols=22 Identities=9% Similarity=-0.081 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 009782 463 GALLYACYLHGNVCMGETAAQK 484 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~ 484 (526)
..-...+.+.|++++|++..++
T Consensus 19 ~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHH
Confidence 3334455555555555555443
No 367
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=24.39 E-value=3.1e+02 Score=22.90 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=6.4
Q ss_pred HhcCChhHHHHHHh
Q 009782 137 ATFGLIDEAHQVFD 150 (526)
Q Consensus 137 ~~~g~~~~a~~~~~ 150 (526)
+..|+.+-+..+++
T Consensus 44 ~~~g~~~~v~~Ll~ 57 (261)
T 2xai_A 44 CLGGHLSCVKILLK 57 (261)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455544444444
No 368
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.36 E-value=1.4e+02 Score=23.30 Aligned_cols=52 Identities=8% Similarity=0.015 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCCC--ChhhHHHHHH-H-----HHccCChHHHHHHHHHHhh
Q 009782 68 KLQALDSIIQDLESSVQNGITV--QTETFASLLE-T-----CYQLKAVEHGIKLHRLIPT 119 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 119 (526)
..|+|-+|.++|+........+ ....|..+|+ . ..+.|+...|..++.....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467777777777777665555 4555666666 2 2346777777777776654
No 369
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.05 E-value=2.9e+02 Score=22.71 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-----hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 009782 165 LISGYAEL---GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-----IRVGEKVHLDAVRFGFGFDGFVLNALV 236 (526)
Q Consensus 165 li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~g~~~~~~~~~~li 236 (526)
+|+++.++ .+.+.|+-.+.+|.+.|-.|....-..++-+.-.-|. +..|...++.....|.+--.......+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHhhc
Q 009782 237 DMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~ 255 (526)
-.++.+-+-..+ ..++..
T Consensus 118 iyLA~APKSNs~-~A~~~A 135 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKA 135 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHH
T ss_pred HHHHcCCccHHH-HHHHHH
No 370
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=23.98 E-value=2.1e+02 Score=20.78 Aligned_cols=75 Identities=9% Similarity=0.018 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV---EKMEFEASPVVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
++.++..-+++... .++|......++..+..+ ++.|.++.. +..|. .+.++...+....+.|-.+.. +.
T Consensus 3 ~~~~al~~L~e~~~---~~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 3 SLARAVERLKAALE---RPKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp CHHHHHHHHHHHHS---SCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred HHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 45666666666643 345555555666554332 233333332 22244 345556666666666655444 44
Q ss_pred HHHHHc
Q 009782 482 AQKLFE 487 (526)
Q Consensus 482 ~~~~~~ 487 (526)
+..|.+
T Consensus 75 w~~m~~ 80 (119)
T 1wty_A 75 WLEMLE 80 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 371
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.44 E-value=2.1e+02 Score=23.85 Aligned_cols=90 Identities=6% Similarity=-0.158 Sum_probs=47.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCc-------chHHHHHHHHhcc---CChHHHHHHHHHHHHhCCCC-------
Q 009782 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQ-------FTFPRVLKACAGL---GLIRVGEKVHLDAVRFGFGF------- 227 (526)
Q Consensus 165 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~t~~~ll~~~~~~---g~~~~a~~~~~~~~~~g~~~------- 227 (526)
.+...++.|+.+....+++.+.+.|..++. .-.+.|. ..+.. |+.+-+..+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 344456677777777777777666655443 2233333 33333 77776666665544432110
Q ss_pred ---chhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 228 ---DGFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 228 ---~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
|..- .+-+...+..|+.+-+..+++.-.
T Consensus 84 ~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 84 TDEFYQG-HSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp CSTTTTT-CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccccC-CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 1111 223444556777777776666543
No 372
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.29 E-value=1.6e+02 Score=24.95 Aligned_cols=83 Identities=6% Similarity=-0.089 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCCC-------ChhhHHHHHHHHH--ccCChHHHHHHHHHHhhhc---------cC-CChhH
Q 009782 68 KLQALDSIIQDLESSVQNGITV-------QTETFASLLETCY--QLKAVEHGIKLHRLIPTNL---------LR-KNKGI 128 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~-~~~~~ 128 (526)
+.|+.+.+..+++.....+... +..-.+.+..++. +.|+.+-+..+++.-...+ .. .+..-
T Consensus 22 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g 101 (273)
T 2pnn_A 22 AQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKG 101 (273)
T ss_dssp HTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTT
T ss_pred HcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCC
Confidence 4455555555666655555332 3344445555553 3577776666666533211 00 11122
Q ss_pred HHHHHHHHHhcCChhHHHHHHhc
Q 009782 129 SSKLLRLYATFGLIDEAHQVFDQ 151 (526)
Q Consensus 129 ~~~ll~~~~~~g~~~~a~~~~~~ 151 (526)
.+. +...+..|..+-+.-+++.
T Consensus 102 ~tp-L~~A~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 102 QTA-LHIAIERRNMTLVTLLVEN 123 (273)
T ss_dssp CCH-HHHHHHTTCHHHHHHHHHT
T ss_pred CCH-HHHHHHcCCHHHHHHHHHC
Confidence 222 3334556777666666654
No 373
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.65 E-value=2.7e+02 Score=24.87 Aligned_cols=148 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCC
Q 009782 95 ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174 (526)
Q Consensus 95 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 174 (526)
..++.-|...|+.++|.+-++++......+...........=.+....+.+..++..+...+. .+-..+..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~--is~~~~~~G------ 86 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH--LSTAQYYQG------ 86 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS--SCHHHHHHH------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC--CCHHHHHHH------
Q ss_pred hHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCh----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 009782 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI----RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKART 250 (526)
Q Consensus 175 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 250 (526)
+....+.+.++.-. .|....+-.-+-+.+-.... +-...+.+.+.+.|... .....++..+.+....+.+.+
T Consensus 87 f~~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~--~fl~~vl~~l~~~~g~~~l~~ 162 (339)
T 1ug3_A 87 LYEILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAA--SLLLEILGLLCKSMGPKKVGT 162 (339)
T ss_dssp HHHHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHH--HHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHcCHHHHHH
Q ss_pred HHhh
Q 009782 251 VFDR 254 (526)
Q Consensus 251 ~~~~ 254 (526)
+|.+
T Consensus 163 ~~~~ 166 (339)
T 1ug3_A 163 LWRE 166 (339)
T ss_dssp HHHH
T ss_pred HHHH
No 374
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.64 E-value=2.8e+02 Score=21.67 Aligned_cols=51 Identities=8% Similarity=-0.004 Sum_probs=28.1
Q ss_pred HhcCChHHHHHHHHHHHccCCCC---cchHHHHHH----H--HHhcCChHHHHHHHHHHH
Q 009782 470 YLHGNVCMGETAAQKLFELEPDN---EHNFELLIK----I--YGNAGRLDDVERVERMLV 520 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~----~--~~~~g~~~~A~~~~~~m~ 520 (526)
...|++-+|-++++.++...+.. ...|..|++ + ..+.|++..|..++.+..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34466666666666666644332 233444444 1 234567777776666654
No 375
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.21 E-value=3.7e+02 Score=22.92 Aligned_cols=167 Identities=10% Similarity=-0.083 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCChhhHH--HHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccc
Q 009782 76 IQDLESSVQNGITVQTETFA--SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153 (526)
Q Consensus 76 ~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 153 (526)
.++++.+.+.|..++..... +.+...+..|+.+-+..+++. ...+........+-+...+..|..+-+..+++.-.
T Consensus 72 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 149 (285)
T 3d9h_A 72 QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 149 (285)
T ss_dssp HHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCC
Q ss_pred cCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHH--HHHHHHhccCChHHHHHHHHHHHHhCCCCch-h
Q 009782 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP--RVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-F 230 (526)
Q Consensus 154 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~ 230 (526)
..+.+....+.|..+..... .++++.+.+.|..++..... +.+...+..|+.+-+..+++. |..++. .
T Consensus 150 ~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~ 220 (285)
T 3d9h_A 150 SVQPESDLASPIHEAARRGH-----VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES----GADVNQGK 220 (285)
T ss_dssp CSSCSCTTSCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT----TCCTTCCB
T ss_pred CCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC----CCCCCCCC
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHh
Q 009782 231 VLNALVDMYAKCGDIVKARTVFD 253 (526)
Q Consensus 231 ~~~~li~~~~~~g~~~~A~~~~~ 253 (526)
.-.+.+...++.|+.+-+.-+++
T Consensus 221 ~g~t~L~~A~~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 221 GQDSPLHAVVRTASEELACLLMD 243 (285)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH
No 376
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=21.61 E-value=1.4e+02 Score=26.78 Aligned_cols=109 Identities=11% Similarity=0.126 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhCC-----CCCChh---hHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChh
Q 009782 72 LDSIIQDLESSVQNG-----ITVQTE---TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~-----~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 143 (526)
-++|..++..+...- ..++.. .+-..+..+.+..++ +++..+.+.|+.|...++.-++..+++.=.++
T Consensus 170 E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~ 245 (334)
T 2qq8_A 170 TADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLP----KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLD 245 (334)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHH
T ss_pred HHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHcCCCccchHHHHHHHHhcccCCHH
Confidence 356667666665431 222322 223334444443343 46777888899998888888888888888899
Q ss_pred HHHHHHhccccCCCCcccHH--HHHHHH---HhcCChHHHHHHHHH
Q 009782 144 EAHQVFDQMSNRTAFAFPWN--SLISGY---AELGEYEDAIALYFQ 184 (526)
Q Consensus 144 ~a~~~~~~~~~~~~~~~~~~--~li~~~---~~~~~~~~a~~~~~~ 184 (526)
.+.++|+.+...+.....+- +++..+ ....++++...+++.
T Consensus 246 ~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~ 291 (334)
T 2qq8_A 246 LACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTR 291 (334)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 99999998876654322121 111111 123466666666554
No 377
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.60 E-value=3.1e+02 Score=21.93 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=7.7
Q ss_pred HHhcCCHHHHHHHHhh
Q 009782 239 YAKCGDIVKARTVFDR 254 (526)
Q Consensus 239 ~~~~g~~~~A~~~~~~ 254 (526)
.+..|+.+-+..+++.
T Consensus 132 A~~~~~~~~v~~Ll~~ 147 (223)
T 2f8y_A 132 AAAVNNVDAAVVLLKN 147 (223)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555555444443
No 378
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=21.53 E-value=3.6e+02 Score=22.52 Aligned_cols=163 Identities=13% Similarity=-0.044 Sum_probs=73.9
Q ss_pred HHHHHhhCCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChh--HHHHHHHHHHhcCChhHHHHHHhcc
Q 009782 78 DLESSVQNGITVQT---ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG--ISSKLLRLYATFGLIDEAHQVFDQM 152 (526)
Q Consensus 78 ~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~ 152 (526)
+++.+.+.|..++. ...+ .+...+..|+.+-+..++ +.|..++.. ...+-+...+..|..+-+..+++.-
T Consensus 18 ~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 92 (261)
T 2xai_A 18 SLRNLISQGWAVNIITADHVS-PLHEACLGGHLSCVKILL----KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 92 (261)
T ss_dssp HHHHHHHTTCCSSCCCTTCCC-HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 44455555655433 2223 344445567766555444 444443321 1122334445567777776666653
Q ss_pred ccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 009782 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT--FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF 230 (526)
Q Consensus 153 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 230 (526)
...+.+.... +.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..++ +.|..++..
T Consensus 93 ~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~ 163 (261)
T 2xai_A 93 ASVQPESDLA-SPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL----ESGADVNQG 163 (261)
T ss_dssp CCSSCSCTTC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH----HHTCCTTCC
T ss_pred CCCCCCCCCC-CHHHHHHHcCcHH----HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHH----HcCCCCCCC
Confidence 3322211112 2334445556654 4445555565554331 113344445566665444433 345443311
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 231 -VLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 231 -~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
.-.+-+...++.|+.+-+.-+++.
T Consensus 164 ~~g~t~Lh~A~~~~~~~~v~~Ll~~ 188 (261)
T 2xai_A 164 KGQDSPLHAVARTASEELACLLMDF 188 (261)
T ss_dssp BTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCChHHHHHHcCCHHHHHHHHHc
Confidence 011233444455666555555544
No 379
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=21.52 E-value=4.1e+02 Score=23.22 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhC-CCCC----ChhhHH---HHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChh
Q 009782 72 LDSIIQDLESSVQN-GITV----QTETFA---SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143 (526)
Q Consensus 72 ~~~a~~~~~~m~~~-~~~~----~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 143 (526)
-++|..++..+... +++. +..... ..+..+.+..++ +++..+.+.|+.+...+..-++..+++.=.++
T Consensus 131 e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~ 206 (310)
T 3hzj_A 131 EEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLP----DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLC 206 (310)
T ss_dssp HHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHH
T ss_pred HHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhCh----HHHHHHHHcCCChHHHHHHHHHHHHhccCCHH
Confidence 35777787777654 2221 111111 122333333233 46777888899998888888999998888899
Q ss_pred HHHHHHhccccCCCCcccHHH--HH----HHHHhcCChHHHHHHHH-HHHH
Q 009782 144 EAHQVFDQMSNRTAFAFPWNS--LI----SGYAELGEYEDAIALYF-QMEE 187 (526)
Q Consensus 144 ~a~~~~~~~~~~~~~~~~~~~--li----~~~~~~~~~~~a~~~~~-~m~~ 187 (526)
.+.++|+.+...++....+-+ ++ .... ..++++.+..|. .+..
T Consensus 207 ~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll-~~d~~~~l~~l~~~lp~ 256 (310)
T 3hzj_A 207 MVFHIIDLLLCEGLNIIFHVALALLKTSKEDLL-QADFEGALKFFRVQLPK 256 (310)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHH-TCCHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHhCcc
Confidence 999999988776664322211 11 1122 347888888886 4443
No 380
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=21.27 E-value=3.2e+02 Score=23.21 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=6.5
Q ss_pred HhcCCHHHHHHHHh
Q 009782 240 AKCGDIVKARTVFD 253 (526)
Q Consensus 240 ~~~g~~~~A~~~~~ 253 (526)
+..|+.+-+.-+++
T Consensus 160 ~~~g~~~~v~~Ll~ 173 (269)
T 4b93_B 160 CSGGHHELVALLLQ 173 (269)
T ss_dssp HHTTCGGGHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 34455544444444
No 381
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.16 E-value=2.4e+02 Score=25.21 Aligned_cols=110 Identities=8% Similarity=0.010 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhhCC---CCCChh---hHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHH
Q 009782 72 LDSIIQDLESSVQNG---ITVQTE---TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~---~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 145 (526)
-+.|..++..+...- ..++.. .....+..+.+.-++ +++..+.+.|+.+...++.-++..+.+.=.++.+
T Consensus 188 E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~ 263 (345)
T 2qfz_A 188 EADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCT 263 (345)
T ss_dssp HHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHH
T ss_pred HHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHH
Confidence 356666666665431 222221 222333333343333 4677778888888888888888888888889999
Q ss_pred HHHHhccccCCCCcc---cHH--HHHHH----HHhcCChHHHHHHHHHH
Q 009782 146 HQVFDQMSNRTAFAF---PWN--SLISG----YAELGEYEDAIALYFQM 185 (526)
Q Consensus 146 ~~~~~~~~~~~~~~~---~~~--~li~~----~~~~~~~~~a~~~~~~m 185 (526)
.++|+.+...+.... .|- +++.. .....++++.+.+++.+
T Consensus 264 lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 264 IRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp HHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 999999877654321 121 22221 23357777777777654
No 382
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.05 E-value=1.3e+02 Score=22.36 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=10.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEG 189 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~ 189 (526)
+..+...+..-.|.++++.+.+.+
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~ 40 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRG 40 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhC
Confidence 333333344444555555554443
No 383
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.61 E-value=1.9e+02 Score=21.23 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=22.2
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 009782 78 DLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT 119 (526)
Q Consensus 78 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 119 (526)
+|+.+....+.|++..--.-+..+...++++.|.+++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444544333322333334456777777777776654
No 384
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=20.24 E-value=2.8e+02 Score=20.90 Aligned_cols=143 Identities=8% Similarity=-0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCChhhHH--HHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccc
Q 009782 76 IQDLESSVQNGITVQTETFA--SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153 (526)
Q Consensus 76 ~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 153 (526)
.++++.+.+.|..++..... +.+...+..|+.+-+..+++. ...+......-.+.+...+..|..+-+.-+++.-.
T Consensus 16 ~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 93 (167)
T 3v31_A 16 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93 (167)
T ss_dssp HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q ss_pred cCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 154 NRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 154 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
..+.....-.+.+...+..|+.+-+.-+++ ....+......-.+.+...+..|+.+-+.-+++...+
T Consensus 94 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 94 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLE--SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Done!