Query 009783
Match_columns 526
No_of_seqs 397 out of 1451
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:54:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 1.1E-27 3.8E-32 254.0 23.2 222 8-270 107-335 (428)
2 2e6m_A Werner syndrome ATP-dep 99.9 4.8E-27 1.6E-31 226.4 18.5 190 6-229 12-207 (208)
3 1yt3_A Ribonuclease D, RNAse D 99.9 2.2E-26 7.6E-31 241.2 21.9 217 10-270 2-220 (375)
4 2hbj_A Exosome complex exonucl 99.9 5.7E-26 1.9E-30 240.5 23.8 217 10-270 86-319 (410)
5 1vk0_A Hypothetical protein; h 99.9 2.1E-26 7.3E-31 222.0 14.9 166 20-214 28-205 (206)
6 3cym_A Uncharacterized protein 99.9 2.5E-23 8.6E-28 222.0 21.3 219 9-270 16-240 (440)
7 2kfn_A Klenow fragment of DNA 99.7 2.3E-16 7.8E-21 174.8 19.0 188 8-231 4-207 (605)
8 3pv8_A DNA polymerase I; DNA p 99.6 3.3E-15 1.1E-19 164.4 14.8 163 32-231 29-194 (592)
9 1x9m_A DNA polymerase; DNA plo 99.3 5.9E-13 2E-17 149.7 7.3 154 34-221 1-188 (698)
10 4dfk_A DNA polymerase I, therm 98.9 1.6E-09 5.3E-14 118.2 7.3 131 33-231 11-142 (540)
11 3v9w_A Ribonuclease T; DEDD nu 98.2 1.9E-05 6.6E-10 76.6 13.5 171 19-222 24-227 (235)
12 1bgx_T TAQ DNA polymerase; DNA 97.9 1.1E-05 3.9E-10 91.9 7.8 122 33-222 305-427 (832)
13 1wlj_A Interferon stimulated g 97.4 0.0012 4.2E-08 61.6 12.5 101 91-222 72-175 (189)
14 2p1j_A POLIII, DNA polymerase 97.4 0.0012 4.2E-08 61.5 12.0 100 91-220 81-180 (186)
15 2f96_A Ribonuclease T; RNAse, 96.6 0.031 1.1E-06 53.3 14.0 92 104-222 126-219 (224)
16 1y97_A Three prime repair exon 95.5 0.06 2E-06 51.7 9.9 109 91-217 98-211 (238)
17 3mxm_B Three prime repair exon 95.1 0.072 2.5E-06 51.6 9.3 110 91-217 103-216 (242)
18 2gui_A DNA polymerase III epsi 95.0 0.078 2.7E-06 49.1 8.9 99 91-214 84-183 (194)
19 2qxf_A Exodeoxyribonuclease I; 94.9 0.28 9.7E-06 52.4 14.0 105 92-215 84-200 (482)
20 3u3y_B Three prime repair exon 94.2 0.19 6.7E-06 50.7 10.1 110 91-217 103-216 (314)
21 1w0h_A 3'-5' exonuclease ERI1; 92.3 0.36 1.2E-05 44.8 8.0 98 92-214 88-193 (204)
22 2lcq_A Putative toxin VAPC6; P 90.5 0.24 8.4E-06 44.9 4.7 28 392-419 85-112 (165)
23 3j20_Y 30S ribosomal protein S 88.3 0.32 1.1E-05 35.4 3.0 15 493-507 35-49 (50)
24 1qht_A Protein (DNA polymerase 86.2 12 0.0004 42.3 15.7 115 91-214 189-328 (775)
25 1noy_A Protein (DNA polymerase 85.7 5.9 0.0002 40.8 12.1 113 91-212 193-335 (388)
26 1zbh_A 3'-5' exonuclease ERI1; 85.5 3.2 0.00011 41.1 9.7 98 92-214 156-261 (299)
27 2igi_A Oligoribonuclease; RNAs 85.1 13 0.00044 33.4 12.8 32 92-123 84-119 (180)
28 1zbu_A ERI-1 homolog, 3'-5' ex 84.1 4.4 0.00015 41.3 10.0 98 92-214 206-311 (349)
29 3na7_A HP0958; flagellar bioge 82.4 0.56 1.9E-05 45.8 2.4 41 455-512 199-239 (256)
30 1s5j_A DNA polymerase I; repli 81.5 25 0.00086 40.0 15.9 164 31-210 189-387 (847)
31 2pk7_A Uncharacterized protein 79.3 1.2 4.2E-05 34.6 2.9 28 455-505 9-36 (69)
32 2jr6_A UPF0434 protein NMA0874 78.6 1.3 4.5E-05 34.3 2.9 28 455-505 9-36 (68)
33 2hf1_A Tetraacyldisaccharide-1 78.6 1.3 4.3E-05 34.4 2.8 28 455-505 9-36 (68)
34 2js4_A UPF0434 protein BB2007; 77.4 1.3 4.5E-05 34.5 2.6 28 455-505 9-36 (70)
35 4rxn_A Rubredoxin; electron tr 76.0 1.1 3.9E-05 33.1 1.7 40 455-503 4-44 (54)
36 3iay_A DNA polymerase delta ca 75.8 17 0.00057 41.9 12.2 114 91-213 315-466 (919)
37 3cg7_A CRN-4, cell death-relat 73.2 3.7 0.00013 41.0 5.3 102 92-214 98-207 (308)
38 2k4x_A 30S ribosomal protein S 70.7 2.7 9.2E-05 31.1 2.7 17 493-509 34-50 (55)
39 3ga8_A HTH-type transcriptiona 70.2 1.8 6.2E-05 34.1 1.8 29 493-521 34-62 (78)
40 4dlp_A Aminoacyl-tRNA syntheta 69.5 2.7 9.1E-05 45.2 3.5 33 372-404 54-86 (536)
41 2jny_A Uncharacterized BCR; st 68.9 3.1 0.00011 32.1 2.8 28 455-505 11-38 (67)
42 1pft_A TFIIB, PFTFIIBN; N-term 68.7 2.9 9.7E-05 30.0 2.4 13 494-506 23-35 (50)
43 2xri_A ERI1 exoribonuclease 3; 68.6 8.5 0.00029 36.2 6.5 97 92-214 107-212 (224)
44 3k59_A POL II, DNA polymerase 67.7 25 0.00087 39.6 11.1 152 32-212 153-349 (786)
45 1e8j_A Rubredoxin; iron-sulfur 67.0 2.8 9.7E-05 30.6 2.1 40 455-503 4-44 (52)
46 3o9x_A Uncharacterized HTH-typ 66.9 0.7 2.4E-05 39.9 -1.4 28 494-521 35-62 (133)
47 2v0c_A Aminoacyl-tRNA syntheta 66.0 6.4 0.00022 45.1 5.9 33 372-404 62-94 (878)
48 2kn9_A Rubredoxin; metalloprot 65.4 1.9 6.5E-05 34.6 1.0 40 455-503 28-68 (81)
49 4gmj_B CCR4-NOT transcription 65.1 1.1E+02 0.0037 30.0 14.4 93 100-218 146-247 (285)
50 1vq8_Z 50S ribosomal protein L 64.6 2.6 8.9E-05 33.9 1.7 16 493-508 43-58 (83)
51 1yk4_A Rubredoxin, RD; electro 64.0 2.9 9.9E-05 30.6 1.7 39 456-503 4-43 (52)
52 1dx8_A Rubredoxin; electron tr 63.0 2.9 9.8E-05 32.6 1.6 40 455-503 8-48 (70)
53 2gbz_A Oligoribonuclease; ORN, 62.6 10 0.00035 34.8 5.6 32 92-123 88-123 (194)
54 2v3b_B Rubredoxin 2, rubredoxi 61.2 2.6 9E-05 31.2 1.0 40 455-503 4-44 (55)
55 1s24_A Rubredoxin 2; electron 60.7 2.7 9.2E-05 34.2 1.1 40 455-503 36-76 (87)
56 4arc_A Leucine--tRNA ligase; l 60.0 4.5 0.00015 46.4 3.1 33 372-404 82-114 (880)
57 1dxg_A Desulforedoxin; non-hem 60.0 4.2 0.00014 27.2 1.8 14 492-505 3-16 (36)
58 1x0t_A Ribonuclease P protein 58.5 13 0.00045 31.8 5.2 33 434-466 45-77 (120)
59 2k3r_A Ribonuclease P protein 57.0 15 0.00052 31.6 5.3 60 434-505 40-99 (123)
60 3tqo_A Cysteinyl-tRNA syntheta 54.1 5.7 0.00019 42.1 2.5 34 372-405 53-86 (462)
61 1dl6_A Transcription factor II 52.2 9.4 0.00032 28.4 2.8 13 493-505 28-40 (58)
62 3cc2_Z 50S ribosomal protein L 51.6 6 0.00021 33.7 1.8 15 494-508 77-91 (116)
63 3v2d_5 50S ribosomal protein L 48.9 7.4 0.00025 29.3 1.7 10 454-463 30-39 (60)
64 3i8o_A KH domain-containing pr 47.9 16 0.00055 32.3 4.1 39 392-430 94-132 (142)
65 2kvh_A Zinc finger and BTB dom 47.1 6.6 0.00023 22.7 1.0 19 495-513 3-21 (27)
66 1rik_A E6APC1 peptide; E6-bind 46.8 8.1 0.00028 22.5 1.4 18 496-513 3-20 (29)
67 2m0d_A Zinc finger and BTB dom 46.7 8 0.00027 22.5 1.4 19 495-513 3-21 (30)
68 2lvu_A Zinc finger and BTB dom 52.3 4.2 0.00014 23.4 0.0 18 496-513 3-20 (26)
69 1d0q_A DNA primase; zinc-bindi 45.8 12 0.00039 31.0 2.7 46 438-503 20-66 (103)
70 1li5_A Cysrs, cysteinyl-tRNA s 45.8 8.4 0.00029 40.7 2.2 34 372-405 50-83 (461)
71 2zjr_Z 50S ribosomal protein L 45.7 8 0.00027 29.1 1.5 11 453-463 29-39 (60)
72 1o4w_A PIN (PILT N-terminus) d 45.3 13 0.00044 32.4 3.1 41 390-431 98-138 (147)
73 3u50_C Telomerase-associated p 45.2 8.5 0.00029 35.2 1.9 27 454-504 42-68 (172)
74 2m0f_A Zinc finger and BTB dom 45.1 8.9 0.00031 22.1 1.4 18 496-513 3-20 (29)
75 2kvg_A Zinc finger and BTB dom 43.3 7.8 0.00027 22.5 0.9 18 496-513 4-21 (27)
76 2kvf_A Zinc finger and BTB dom 43.2 8.2 0.00028 22.3 1.0 18 496-513 4-21 (28)
77 6rxn_A Rubredoxin; electron tr 42.6 8.9 0.0003 27.3 1.2 14 494-507 3-16 (46)
78 3ix7_A Uncharacterized protein 42.1 17 0.00059 31.7 3.3 37 392-428 86-122 (134)
79 2m0e_A Zinc finger and BTB dom 42.1 7.7 0.00026 22.3 0.8 18 496-513 3-20 (29)
80 3c8z_A Cysteinyl-tRNA syntheta 41.3 8.1 0.00028 40.1 1.3 33 372-404 67-99 (414)
81 1ard_A Yeast transcription fac 41.1 6.1 0.00021 23.0 0.1 18 496-513 3-20 (29)
82 2akl_A PHNA-like protein PA012 41.0 13 0.00044 32.3 2.2 28 454-505 27-54 (138)
83 1gh9_A 8.3 kDa protein (gene M 40.6 13 0.00044 28.9 2.0 12 493-505 19-30 (71)
84 1znf_A 31ST zinc finger from X 39.6 6.7 0.00023 22.4 0.2 18 496-513 2-19 (27)
85 3pwf_A Rubrerythrin; non heme 39.0 12 0.0004 34.1 1.8 14 493-506 136-149 (170)
86 3m7n_A Putative uncharacterize 38.5 5.5 0.00019 36.5 -0.5 15 451-465 137-151 (179)
87 1klr_A Zinc finger Y-chromosom 38.3 7.8 0.00027 22.5 0.3 18 496-513 3-20 (30)
88 2els_A Zinc finger protein 406 38.2 12 0.00042 23.2 1.3 21 493-513 7-27 (36)
89 3j21_i 50S ribosomal protein L 37.5 15 0.00052 29.4 2.0 17 493-509 51-67 (83)
90 3iz5_m 60S ribosomal protein L 37.0 17 0.00058 29.7 2.2 18 493-510 52-69 (92)
91 3jyw_9 60S ribosomal protein L 35.5 16 0.00056 28.5 1.8 17 493-509 42-58 (72)
92 3izc_m 60S ribosomal protein R 35.5 18 0.00063 29.5 2.2 18 493-510 52-69 (92)
93 4a17_Y RPL37A, 60S ribosomal p 35.2 16 0.00054 30.5 1.8 18 493-510 52-69 (103)
94 3sp1_A Cysteinyl-tRNA syntheta 34.9 9 0.00031 40.9 0.4 34 372-405 70-113 (501)
95 2kpi_A Uncharacterized protein 34.9 18 0.00062 26.7 1.9 11 455-465 11-21 (56)
96 2lo3_A SAGA-associated factor 34.8 18 0.0006 25.2 1.6 14 491-504 13-26 (44)
97 2elq_A Zinc finger protein 406 34.3 18 0.00063 22.3 1.7 21 493-513 7-27 (36)
98 2elx_A Zinc finger protein 406 34.1 15 0.00052 22.3 1.3 20 494-513 6-25 (35)
99 1l1o_C Replication protein A 7 34.1 19 0.00066 32.8 2.4 13 493-505 60-72 (181)
100 1yuz_A Nigerythrin; rubrythrin 34.1 23 0.00079 33.0 3.0 28 434-463 153-180 (202)
101 2elm_A Zinc finger protein 406 34.0 22 0.00076 22.3 2.1 20 493-512 7-26 (37)
102 1paa_A Yeast transcription fac 33.5 11 0.00038 22.0 0.5 17 496-512 3-19 (30)
103 1p7a_A BF3, BKLF, kruppel-like 33.5 11 0.00038 23.5 0.5 20 494-513 10-29 (37)
104 3ray_A PR domain-containing pr 33.4 14 0.00048 35.5 1.4 26 482-508 18-43 (237)
105 1srk_A Zinc finger protein ZFP 32.6 15 0.00051 22.5 1.0 20 494-513 6-25 (35)
106 2k5c_A Uncharacterized protein 32.5 12 0.0004 29.9 0.5 13 495-507 51-63 (95)
107 2elt_A Zinc finger protein 406 32.3 17 0.00059 22.3 1.3 21 493-513 7-27 (36)
108 2lvt_A Zinc finger and BTB dom 38.4 9.6 0.00033 22.2 0.0 17 496-512 3-19 (29)
109 2lvr_A Zinc finger and BTB dom 38.0 9.8 0.00033 22.2 0.0 18 496-513 4-21 (30)
110 1s24_A Rubredoxin 2; electron 31.1 17 0.00059 29.4 1.3 15 493-507 33-47 (87)
111 3dbo_B Uncharacterized protein 30.9 26 0.00089 30.8 2.7 44 369-418 97-140 (150)
112 2odx_A Cytochrome C oxidase po 30.5 19 0.00063 28.7 1.4 13 493-505 54-66 (80)
113 2kn9_A Rubredoxin; metalloprot 30.5 17 0.00059 29.0 1.2 14 493-506 25-38 (81)
114 2elo_A Zinc finger protein 406 30.4 15 0.00051 22.9 0.7 21 493-513 7-27 (37)
115 2elp_A Zinc finger protein 406 30.3 24 0.00084 21.8 1.8 21 493-513 7-28 (37)
116 2au3_A DNA primase; zinc ribbo 30.2 28 0.00097 35.8 3.2 47 437-503 16-63 (407)
117 2d74_B Translation initiation 30.2 48 0.0016 29.4 4.2 53 426-504 82-134 (148)
118 2elr_A Zinc finger protein 406 29.8 17 0.00059 22.3 1.0 21 493-513 7-27 (36)
119 1v54_F VI, cytochrome C oxidas 28.6 20 0.0007 29.6 1.4 13 493-505 77-89 (98)
120 3j21_g 50S ribosomal protein L 28.6 19 0.00064 26.2 1.0 10 495-504 28-37 (51)
121 2elv_A Zinc finger protein 406 27.5 24 0.00082 21.7 1.4 20 494-513 8-27 (36)
122 3u1f_A Methionyl-tRNA syntheta 27.3 21 0.0007 38.1 1.6 32 372-405 38-71 (542)
123 1lko_A Rubrerythrin all-iron(I 27.1 21 0.00073 32.9 1.4 14 494-508 154-167 (191)
124 3iuf_A Zinc finger protein UBI 26.9 20 0.0007 24.3 1.0 20 494-513 6-25 (48)
125 2yts_A Zinc finger protein 484 26.8 21 0.00071 23.5 1.0 21 493-513 10-30 (46)
126 1njq_A Superman protein; zinc- 26.8 21 0.00072 22.6 1.0 20 494-513 5-24 (39)
127 2kfq_A FP1; protein, de novo p 26.8 10 0.00035 23.1 -0.6 15 496-510 3-17 (32)
128 1qyp_A RNA polymerase II; tran 26.7 24 0.00084 25.7 1.4 12 493-504 41-52 (57)
129 3mhs_E SAGA-associated factor 26.7 23 0.00078 29.1 1.3 17 488-504 68-84 (96)
130 3q87_A Putative uncharacterize 26.4 20 0.00069 30.9 1.0 12 495-506 99-110 (125)
131 2ept_A Zinc finger protein 32; 25.8 27 0.00092 22.3 1.4 21 493-513 8-28 (41)
132 2emi_A Zinc finger protein 484 25.8 22 0.00076 23.4 1.0 21 493-513 10-30 (46)
133 2kwq_A Protein MCM10 homolog; 25.7 36 0.0012 27.8 2.3 41 455-504 16-56 (92)
134 3zvk_A VAPC2, toxin of toxin-a 25.6 34 0.0012 28.6 2.4 40 370-415 82-122 (134)
135 1yuz_A Nigerythrin; rubrythrin 25.4 26 0.00088 32.7 1.7 14 493-506 169-182 (202)
136 1wg2_A Zinc finger (AN1-like) 25.3 43 0.0015 25.5 2.5 11 454-464 15-25 (64)
137 2i5o_A DNA polymerase ETA; zin 25.3 34 0.0012 23.4 1.8 13 493-505 7-19 (39)
138 2en2_A B-cell lymphoma 6 prote 25.2 28 0.00095 22.3 1.4 21 493-513 9-29 (42)
139 2e72_A POGO transposable eleme 25.2 17 0.00059 26.0 0.3 12 494-505 11-22 (49)
140 3tnd_A TRNA(FMet)-specific end 25.2 52 0.0018 27.3 3.5 40 371-416 82-122 (132)
141 2k5r_A Uncharacterized protein 25.1 69 0.0023 26.4 4.0 13 493-505 51-63 (97)
142 1rim_A E6APC2 peptide; E6-bind 25.0 15 0.0005 22.6 -0.1 18 496-513 3-20 (33)
143 3d45_A Poly(A)-specific ribonu 25.0 80 0.0027 33.5 5.6 106 102-217 274-393 (507)
144 2e9h_A EIF-5, eukaryotic trans 24.9 68 0.0023 28.7 4.2 60 426-509 81-140 (157)
145 2a1r_A Poly(A)-specific ribonu 24.8 1.3E+02 0.0043 31.3 7.0 114 96-217 274-398 (430)
146 3tr8_A Oligoribonuclease; tran 24.6 1.4E+02 0.0047 27.1 6.5 46 92-141 88-137 (186)
147 2epv_A Zinc finger protein 268 24.5 24 0.00084 23.0 1.0 21 493-513 10-30 (44)
148 2eoy_A Zinc finger protein 473 24.4 29 0.00099 22.8 1.4 20 494-513 11-30 (46)
149 3kfl_A Methionyl-tRNA syntheta 24.1 23 0.00079 38.2 1.2 34 372-405 55-88 (564)
150 3ikm_A DNA polymerase subunit 23.8 54 0.0019 38.1 4.1 57 163-219 288-350 (1172)
151 2em3_A Zinc finger protein 28 23.5 26 0.00089 23.0 1.0 21 493-513 10-30 (46)
152 1fv5_A First zinc finger of U- 23.4 29 0.00099 22.8 1.2 21 493-513 6-26 (36)
153 2emj_A Zinc finger protein 28 23.0 27 0.00094 23.0 1.0 21 493-513 10-30 (46)
154 3u6p_A Formamidopyrimidine-DNA 22.8 31 0.0011 33.7 1.8 12 492-503 262-273 (273)
155 2yrj_A Zinc finger protein 473 22.8 32 0.0011 22.5 1.4 21 493-513 10-30 (46)
156 2eox_A Zinc finger protein 473 22.8 30 0.001 22.4 1.2 21 493-513 10-30 (44)
157 1wfh_A Zinc finger (AN1-like) 22.7 51 0.0018 25.0 2.5 11 454-464 15-25 (64)
158 1ee8_A MUTM (FPG) protein; bet 22.6 30 0.001 33.7 1.5 12 492-503 252-263 (266)
159 2y69_F Cytochrome C oxidase su 22.5 32 0.0011 29.8 1.6 13 493-505 108-120 (129)
160 2eoz_A Zinc finger protein 473 22.1 28 0.00095 22.9 0.9 21 493-513 10-30 (46)
161 2cr8_A MDM4 protein; ZF-ranbp 21.9 38 0.0013 24.5 1.6 14 491-504 7-20 (53)
162 2yu5_A Zinc finger protein 473 21.8 36 0.0012 22.0 1.4 20 494-513 11-30 (44)
163 3h0g_I DNA-directed RNA polyme 21.8 52 0.0018 27.6 2.7 37 454-509 4-40 (113)
164 2ytp_A Zinc finger protein 484 21.7 30 0.001 22.8 1.0 21 493-513 10-30 (46)
165 2lcq_A Putative toxin VAPC6; P 21.7 30 0.001 30.8 1.2 15 435-449 105-119 (165)
166 2jrp_A Putative cytoplasmic pr 21.6 54 0.0019 26.1 2.6 11 455-465 3-13 (81)
167 2e2z_A TIM15; protein import, 21.5 19 0.00064 29.9 -0.1 33 456-504 15-47 (100)
168 2x1l_A Methionyl-tRNA syntheta 21.5 29 0.00099 36.8 1.3 33 372-404 41-73 (524)
169 2eoj_A Zinc finger protein 268 21.5 27 0.00091 22.7 0.7 21 493-513 10-30 (44)
170 2emb_A Zinc finger protein 473 21.5 30 0.001 22.4 1.0 20 494-513 11-30 (44)
171 2epc_A Zinc finger protein 32; 21.5 37 0.0012 21.6 1.4 21 493-513 9-29 (42)
172 2en3_A ZFP-95, zinc finger pro 21.5 36 0.0012 22.3 1.4 21 493-513 10-30 (46)
173 2eof_A Zinc finger protein 268 21.5 30 0.001 22.3 1.0 21 493-513 10-30 (44)
174 2enh_A Zinc finger protein 28 21.4 25 0.00086 23.2 0.5 21 493-513 10-30 (46)
175 2eor_A Zinc finger protein 224 21.3 30 0.001 22.6 1.0 21 493-513 10-30 (46)
176 1wfp_A Zinc finger (AN1-like) 21.3 58 0.002 25.5 2.6 11 454-464 25-35 (74)
177 2yto_A Zinc finger protein 484 21.2 36 0.0012 22.3 1.4 21 493-513 10-30 (46)
178 3k7a_M Transcription initiatio 21.0 38 0.0013 34.0 2.1 15 492-506 39-53 (345)
179 2xzf_A Formamidopyrimidine-DNA 20.9 36 0.0012 33.1 1.8 12 492-503 259-270 (271)
180 2em4_A Zinc finger protein 28 20.9 36 0.0012 22.3 1.3 21 493-513 10-30 (46)
181 2ep3_A Zinc finger protein 484 20.8 36 0.0012 22.3 1.3 21 493-513 10-30 (46)
182 2yxb_A Coenzyme B12-dependent 20.8 72 0.0025 28.2 3.6 31 372-403 38-68 (161)
183 1vd4_A Transcription initiatio 20.7 49 0.0017 23.7 2.1 19 493-511 12-30 (62)
184 1vk6_A NADH pyrophosphatase; 1 20.6 50 0.0017 32.0 2.7 32 454-508 107-138 (269)
185 1ffk_W Ribosomal protein L37AE 20.6 35 0.0012 26.6 1.3 15 494-508 44-58 (73)
186 2eml_A Zinc finger protein 28 20.6 37 0.0013 22.2 1.3 21 493-513 10-30 (46)
187 3qt1_I DNA-directed RNA polyme 20.6 54 0.0018 28.5 2.6 35 454-507 24-58 (133)
188 1ncs_A Peptide M30F, transcrip 20.6 51 0.0017 21.9 2.1 21 493-513 16-38 (47)
189 1k82_A Formamidopyrimidine-DNA 20.6 37 0.0013 33.0 1.8 12 492-503 257-268 (268)
190 2ab3_A ZNF29; zinc finger prot 20.5 33 0.0011 19.5 0.9 18 496-513 3-22 (29)
191 2eow_A Zinc finger protein 347 20.4 38 0.0013 22.1 1.3 21 493-513 10-30 (46)
192 2el5_A Zinc finger protein 268 20.3 39 0.0013 21.5 1.3 21 493-513 8-28 (42)
193 2ytf_A Zinc finger protein 268 20.2 38 0.0013 22.1 1.3 21 493-513 10-30 (46)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.96 E-value=1.1e-27 Score=254.05 Aligned_cols=222 Identities=21% Similarity=0.259 Sum_probs=178.8
Q ss_pred CccEEEEeCCChHHHHHHHHHhcCCCeEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC
Q 009783 8 PLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI 87 (526)
Q Consensus 8 ~~~i~~V~t~~~~el~~~~~~L~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l 87 (526)
...|++|++ .+++..+++.+...+.||||+||.+... +.+.+++||||+. +++|+||+..+
T Consensus 107 ~~~y~~I~t--~e~L~~~l~~L~~~~~vavDtE~~~~~~---~~~~l~lIQLa~~--------------~~~~lidpl~l 167 (428)
T 3saf_A 107 ETPCHFISS--LDELVELNEKLLNCQEFAVNLEHHSYRS---FLGLTCLMQISTR--------------TEDFIIDTLEL 167 (428)
T ss_dssp GSCEEEECS--HHHHHHHHHHHTTCSEEEEEEEEECTTC---SSCEEEEEEEECS--------------SCEEEEETTTT
T ss_pred CCCcEEECC--HHHHHHHHHHHhcCCeEEEEEEecCCCC---CCCeEEEEEEEeC--------------CcEEEEEeccc
Confidence 356889998 8999999999999999999999988764 7789999999985 57899998876
Q ss_pred CchhhHHHHHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHHH
Q 009783 88 PLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANI 167 (526)
Q Consensus 88 ~~~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L 167 (526)
. ..+..|+++|+|++|.|||||+++|+.+|.+.+|+ . +.++|| |++|+|+++++ .+||+.|
T Consensus 168 ~--~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi---~-----~~~~fD-T~lAa~lL~~~--------~~gL~~L 228 (428)
T 3saf_A 168 R--SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGL---Y-----VVNMFD-THQAARLLNLG--------RHSLDHL 228 (428)
T ss_dssp G--GGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC---C-----CSSEEE-HHHHHHHTTCS--------CCSHHHH
T ss_pred h--hhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCC---C-----cCceee-chhHHHHhCCC--------CCCHHHH
Confidence 4 24578999999999999999999999999766766 2 367999 99999999863 5899999
Q ss_pred HHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cchhhhhhhhcc---CcccC
Q 009783 168 CKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGFAA----GNSCSSISELDS---SNLDL 240 (526)
Q Consensus 168 v~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~~----~~~~~e~~~~~~---~~~~~ 240 (526)
++++||+.++|+.+.+||+.|||+++|+.|||.||+++++||+.|.++|++.|... +|..++.+.+.. ..+.+
T Consensus 229 v~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (428)
T 3saf_A 229 LKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIF 308 (428)
T ss_dssp HHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999998731 233334333321 11223
Q ss_pred CCCCCcccCCCCCcccccchhhHHHHHHHh
Q 009783 241 GLKGILEKPDIGNKTVRFKLCEALDIIRAT 270 (526)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (526)
..+.|++.... +.+...+++++++++|
T Consensus 309 ~~~~~~~~~~~---~~~~l~~~~l~l~~~L 335 (428)
T 3saf_A 309 TDESYLELYRK---QKKHLNTQQLTAFQLL 335 (428)
T ss_dssp CTTGGGHHHHT---TCCCCCHHHHHHHHHH
T ss_pred CcccHHHHHHH---hccCCChHHHHHHHHH
Confidence 33445433211 1124578888888888
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.95 E-value=4.8e-27 Score=226.35 Aligned_cols=190 Identities=29% Similarity=0.395 Sum_probs=149.4
Q ss_pred CCCccEEEEeCCChHHHH----HHHHHhcCCCeEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEE
Q 009783 6 RKPLKIHLVTSTESPEFT----HLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFL 81 (526)
Q Consensus 6 ~~~~~i~~V~t~~~~el~----~~~~~L~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~l 81 (526)
..+++|++|++ .+++. .++..+...++||||+||.+.+.. .+.++++++|+|+. ++.+|+
T Consensus 12 ~f~g~i~~i~~--~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~-~~~~~~~~iqla~~-------------~~~~~~ 75 (208)
T 2e6m_A 12 EFPGSIVYSYE--ASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKP-GKRSRVAVIQLCVS-------------ESKCYL 75 (208)
T ss_dssp CCCSEEEEECS--HHHHHHHHHHHHHHCCTTCEEEEEEECCC---C-CSCCCCCEEEEECS-------------SSEEEE
T ss_pred ccCCcEEEEeC--HHHHHHHHHHHHHHhccCCEEEEEeecCCCCCC-CCCCCeEEEEEecC-------------CCeEEE
Confidence 45578999998 78887 555667777889999999987321 24578999999984 368999
Q ss_pred EeCCCCCchhhHHHHHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCC
Q 009783 82 LDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKET 161 (526)
Q Consensus 82 iD~~~l~~~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~ 161 (526)
||+..+. .+...|+++|+|+.|.|||||+++|+..|.+.+|+ .+.++||+|++|+|++++. ..
T Consensus 76 i~~~~~~--~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi--------~~~~~fDlt~lAayll~~~-------~~ 138 (208)
T 2e6m_A 76 FHISSMS--VFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDV--------KLESFVELTDVANEKLKCA-------ET 138 (208)
T ss_dssp ECGGGCS--SCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCC--------CCCSEEEHHHHHHHHTTCC-------CC
T ss_pred EECcccc--cchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCC--------CCCCEEEHHHHHHHHccCC-------CC
Confidence 9876543 24568999999999999999999999999887776 1356999999999999863 57
Q ss_pred ccHHHHHHHHcCCcCcc--cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhh
Q 009783 162 KSLANICKELLDISLSK--ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGFAAGNSCSS 229 (526)
Q Consensus 162 ~gL~~Lv~~~Lg~~L~K--~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~e 229 (526)
+||+.|++++||..+.| ..+++||+.|||+++|+.|||.||+++++||+.|.++|++.|.. +|..+|
T Consensus 139 ~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~-~~~~~~ 207 (208)
T 2e6m_A 139 WSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVF-ALNKAE 207 (208)
T ss_dssp CCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-------------
T ss_pred hhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhh-hhcccc
Confidence 99999999999999854 67899999999999999999999999999999999999998877 666554
No 3
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.94 E-value=2.2e-26 Score=241.23 Aligned_cols=217 Identities=22% Similarity=0.323 Sum_probs=181.8
Q ss_pred cEEEEeCCChHHHHHHHHHhcCCCeEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCc
Q 009783 10 KIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPL 89 (526)
Q Consensus 10 ~i~~V~t~~~~el~~~~~~L~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~ 89 (526)
+|++|++ .+++..+++.+...+.||||+||.+... +.+.+++|||++. +.+|++|+..+.
T Consensus 2 ~~~~I~t--~~~l~~~~~~l~~~~~va~D~E~~~~~~---~~~~l~liqla~~--------------~~~~lid~~~l~- 61 (375)
T 1yt3_A 2 NYQMITT--DDALASLCEAVRAFPAIALDTEFVRTRT---YYPQLGLIQLFDG--------------EHLALIDPLGIT- 61 (375)
T ss_dssp CCEEECS--HHHHHHHHHHHTTSSEEEEEEEEECCSC---SSCEEEEEEEECS--------------SCEEEECGGGCS-
T ss_pred CeEEeCC--HHHHHHHHHHHcCCCeEEEEeeecCCCc---CCCceEEEEEecC--------------CcEEEEeCCCCC-
Confidence 4678888 7889999999888899999999998763 5689999999974 468999965442
Q ss_pred hhhHHHHHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHH
Q 009783 90 PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (526)
Q Consensus 90 ~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~ 169 (526)
.+..|+++|+|++|.|||||+++|+..|.+.+|+ . +.++|| |++|+|++++. .++||+.|++
T Consensus 62 --~~~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi---~-----~~~~fD-t~lAa~lL~~~-------~~~~L~~L~~ 123 (375)
T 1yt3_A 62 --DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGE---L-----PQPLID-TQILAAFCGRP-------MSWGFASMVE 123 (375)
T ss_dssp --CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSS---C-----CSSEEE-HHHHHHHTTCC-------TTCCHHHHHH
T ss_pred --ChHHHHHHHcCCCceEEEeeHHHHHHHHHHHcCC---C-----CCcEEE-cHHHHHHcCCC-------CChhHHHHHH
Confidence 3567999999999999999999999999876666 2 358999 99999999873 5799999999
Q ss_pred HHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCcc--cCCCCCCcc
Q 009783 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGFAAGNSCSSISELDSSNL--DLGLKGILE 247 (526)
Q Consensus 170 ~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~e~~~~~~~~~--~~~~~~~~~ 247 (526)
++||..++|+.+.+||+.|||+++|+.|||.||++++.||+.|.++|++.|.. +|+++||+....... ...-..|++
T Consensus 124 ~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~-~l~~~e~E~pl~~~~~~~~~~~~~~~ 202 (375)
T 1yt3_A 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL-PAALDECRLMQMRRQEVVAPEDAWRD 202 (375)
T ss_dssp HHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHCCCCGGGGGGG
T ss_pred HHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHhhcccCCCchHHHHh
Confidence 99999999999999999999999999999999999999999999999999988 788999987644211 112245777
Q ss_pred cCCCCCcccccchhhHHHHHHHh
Q 009783 248 KPDIGNKTVRFKLCEALDIIRAT 270 (526)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~ 270 (526)
.+ +.+++ .++++++++++
T Consensus 203 ~~----~~~~l-~~~~~~~~~~L 220 (375)
T 1yt3_A 203 IT----NAWQL-RTRQLACLQLL 220 (375)
T ss_dssp ST----TGGGS-CHHHHHHHHHH
T ss_pred cc----CcccC-CHHHHHHHHHH
Confidence 76 34555 68899999987
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.94 E-value=5.7e-26 Score=240.54 Aligned_cols=217 Identities=20% Similarity=0.226 Sum_probs=177.9
Q ss_pred cEEEEeCCChHHHHHHHHHhcCCCeEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCc
Q 009783 10 KIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPL 89 (526)
Q Consensus 10 ~i~~V~t~~~~el~~~~~~L~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~ 89 (526)
.+.+|++ .+++..+++.|...+.||||+||.+... +.+.+++||||+. +.+|++|+..+.
T Consensus 86 ~~~~I~t--~~~L~~~~~~L~~~~~vavDtE~~~~~~---~~~~l~liQla~~--------------~~~ylid~l~l~- 145 (410)
T 2hbj_A 86 VPIWVDT--STELESMLEDLKNTKEIAVDLEHHDYRS---YYGIVCLMQISTR--------------ERDYLVDTLKLR- 145 (410)
T ss_dssp CCEEECS--HHHHHHHHHHHTTCSEEEEEEEEECSSS---SSCEEEEEEEECS--------------SCEEEEETTTTT-
T ss_pred CcEEeCC--HHHHHHHHHHHhhCCceEEEeeecCCcC---CCCcEEEEEEEEC--------------CcEEEEechhhh-
Confidence 3788988 7889999999888889999999987542 5689999999984 468999975542
Q ss_pred hhhHHHHHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHH
Q 009783 90 PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (526)
Q Consensus 90 ~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~ 169 (526)
..+..|+++|+|++|.|||||+++|+..|.+.+|+ . +.++|| |++|+|+++++ ++||+.|++
T Consensus 146 -~~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi---~-----~~~~fD-t~lAa~LL~~~--------~~~L~~L~~ 207 (410)
T 2hbj_A 146 -ENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGL---Y-----VVGLFD-TYHASKAIGLP--------RHSLAYLLE 207 (410)
T ss_dssp -TTGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC---C-----CSSEEE-HHHHHHHHTCS--------CCSHHHHHH
T ss_pred -hhHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCC---C-----cCCEEE-cHHHHHHhCCC--------ccCHHHHHH
Confidence 23567899999999999999999999999887776 2 356999 99999999862 689999999
Q ss_pred HHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCc------------
Q 009783 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGFAAGNSCSSISELDSSN------------ 237 (526)
Q Consensus 170 ~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~e~~~~~~~~------------ 237 (526)
++||..++|+.+.+||+.|||+++|+.|||.||++++.||+.|.++|++.|+. +|+.+|+..+....
T Consensus 208 ~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~-~~~~~e~~~l~~~~~~~~~~~~~~~~ 286 (410)
T 2hbj_A 208 NFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKL-AGVLYESRNVAKRRFEYSKYRPLTPS 286 (410)
T ss_dssp HHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCEECCGGGCCSSCC
T ss_pred HHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-HhHHHHHHHHHHHHhhhccccccccc
Confidence 99999999999999999999999999999999999999999999999999998 89999888653311
Q ss_pred -----ccCCCCCCcccCCCCCcccccchhhHHHHHHHh
Q 009783 238 -----LDLGLKGILEKPDIGNKTVRFKLCEALDIIRAT 270 (526)
Q Consensus 238 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (526)
....-..|++..+. ++++ +++++++++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~----~~l~-~~~~~l~~~L 319 (410)
T 2hbj_A 287 SEVYSPIEKESPWKILMYQ----YNIP-PEREVLVREL 319 (410)
T ss_dssp SSEECCCCSSSSSSSCSSC----SCCC-STTHHHHHHH
T ss_pred cccccCCchhHHHHHHhhh----cCCC-HHHHHHHHHH
Confidence 11123458776633 4443 3455777777
No 5
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.94 E-value=2.1e-26 Score=221.95 Aligned_cols=166 Identities=15% Similarity=0.227 Sum_probs=131.5
Q ss_pred HHHHHHHHHh------cCCCeEEEEEEEcCCCCC---CCCC--CceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCC
Q 009783 20 PEFTHLARAL------SQSSLVGLDAEWKPQRSH---QSNF--PRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIP 88 (526)
Q Consensus 20 ~el~~~~~~L------~~~~~Vg~D~E~~~~~~~---~~~~--~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~ 88 (526)
+++..+++.+ .+..+||||+||.+.+.. .++. ++++|||||+. +.++||++.. .
T Consensus 28 ~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~--------------~~~~l~~l~~-~ 92 (206)
T 1vk0_A 28 TDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTR--------------NLCLFLRLPK-P 92 (206)
T ss_dssp CCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECS--------------SEEEEEECCS-S
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecC--------------CCeEEEeccc-c
Confidence 4455555444 567899999999986510 0133 48999999984 6799999831 1
Q ss_pred chhhHHHHHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHH
Q 009783 89 LPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANIC 168 (526)
Q Consensus 89 ~~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv 168 (526)
.+..+..|.++|+|++|+||||++++|+..|.+.||+ .+.++||++.+|+.+++... ....||+.|+
T Consensus 93 ~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~--------~~~~~~Dl~~la~~~lg~~~-----~~~~gL~~Lv 159 (206)
T 1vk0_A 93 FHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGL--------VIRNAINVGKLAAEARGTLV-----LEFLGTRELA 159 (206)
T ss_dssp CCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCC--------CCSSEEEHHHHHHHHHTCGG-----GGGCCHHHHH
T ss_pred CCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCC--------CcCCeeeHHHHHHHHcCCCC-----CCCccHHHHH
Confidence 1223456889999999999999999999999988776 24899997778877665310 1478999999
Q ss_pred HHHcCCcC-cccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 169 KELLDISL-SKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (526)
Q Consensus 169 ~~~Lg~~L-~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (526)
+++||..+ +|..++|||++ ||+++|+.|||.||+++++||+.|.+
T Consensus 160 ~~~lg~~lK~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 160 HRVLWSDLGQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHCCCCHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcCCCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999 55779999999 99999999999999999999999864
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.91 E-value=2.5e-23 Score=222.04 Aligned_cols=219 Identities=22% Similarity=0.260 Sum_probs=177.1
Q ss_pred ccEEEEeCCChHHHHHHHHHhcCC-CeEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC
Q 009783 9 LKIHLVTSTESPEFTHLARALSQS-SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI 87 (526)
Q Consensus 9 ~~i~~V~t~~~~el~~~~~~L~~~-~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l 87 (526)
..+.+|++ .+++..+++.+... +.||||+||.+.+. +.+.+++|||++. ++.+|+||...+
T Consensus 16 ~~~~~I~t--~e~L~~~~~~L~~~~~~vavDtE~~~~~~---~~~~l~liQla~~-------------~~~~~lid~l~~ 77 (440)
T 3cym_A 16 GVPNVIDT--LPAFRDYCSELASSHGSLAADAERASGFR---YGHEDWLVQFKRD-------------GAGIGLLDPQAL 77 (440)
T ss_dssp CCCCEECS--HHHHHHHHHHHHSCEEEEEEEEEECTTTS---SSCCEEEEEEEEE-------------TTEEEEECHHHH
T ss_pred CCCEeeCC--HHHHHHHHHHHHhcCCeEEEEeeecCCCC---CCCCEEEEEEEEC-------------CCcEEEEEcCCc
Confidence 33467887 78899999988776 88999999987653 5788999999985 356888886321
Q ss_pred Cc-hhhHHHHHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHH
Q 009783 88 PL-PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLAN 166 (526)
Q Consensus 88 ~~-~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~ 166 (526)
.. ...+..|+++|+|+ .||+|++++|+.+|. .+|+ . +.++|| |++|+|++++ .++||+.
T Consensus 78 ~~~~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L~-~~gi---~-----~~~~fD-t~lAa~lL~~--------~~~gL~~ 137 (440)
T 3cym_A 78 AAAGADWNDFNRAVGDA--VWILHDSLQDLPGFD-ELGM---E-----PQRLFD-TEIAARLLGL--------KRFGLAA 137 (440)
T ss_dssp HHTTCCHHHHHHHHTTC--EEEESSHHHHHHHHH-HHTC---C-----CCEEEE-HHHHHHHTTC--------SSCSHHH
T ss_pred cccccCHHHHHHHHCCC--CEEEEcCHHHHHHHH-HcCC---c-----CCceeh-HHHHHHHhCC--------CCCCHHH
Confidence 00 01256899999997 699999999999997 5665 2 358999 8999999986 2799999
Q ss_pred HHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCcc---cCCCC
Q 009783 167 ICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGFAAGNSCSSISELDSSNL---DLGLK 243 (526)
Q Consensus 167 Lv~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~e~~~~~~~~~---~~~~~ 243 (526)
|++.++|..++|+.+.+||..|||+++|+.|||.||++++.||+.|.++|.+.|.. +|+.+|+..+..... .+...
T Consensus 138 L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~-~l~~~e~~~l~~~~~~~~~~~~~ 216 (440)
T 3cym_A 138 VTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKM-EWAQEEFDYALKEGLGPRKEHLI 216 (440)
T ss_dssp HHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHSSSCCCCSS
T ss_pred HHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHhccccccCCCchH
Confidence 99999999999999999999999999999999999999999999999999999998 899999998854222 23345
Q ss_pred CCcccCCCCCccccc-chhhHHHHHHHh
Q 009783 244 GILEKPDIGNKTVRF-KLCEALDIIRAT 270 (526)
Q Consensus 244 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 270 (526)
.|++.... .++ +.++++++++++
T Consensus 217 ~~~~~~~~----~~l~~~~~~l~~~~~L 240 (440)
T 3cym_A 217 PWMHVSHI----TEVMRDRQALAIVRAL 240 (440)
T ss_dssp GGGCCTTG----GGGTTCHHHHHHHHHH
T ss_pred HHHHhccc----cccCCCHHHHHHHHHH
Confidence 57655432 233 578999999888
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.70 E-value=2.3e-16 Score=174.82 Aligned_cols=188 Identities=18% Similarity=0.183 Sum_probs=147.2
Q ss_pred CccEEEEeCCChHHHHHHHHHhcCCCeEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCC-
Q 009783 8 PLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSS- 86 (526)
Q Consensus 8 ~~~i~~V~t~~~~el~~~~~~L~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~- 86 (526)
+.+|.+|++ .+++.++++.+...+.|+||+|+++..+ +.+++..||++.. .+.++++++..
T Consensus 4 ~~~y~~I~~--~~~l~~~~~~l~~~~~va~DtEttgl~~---~~~~iv~I~~~~~-------------~g~~~yip~~~~ 65 (605)
T 2kfn_A 4 YDNYVTILD--EETLKAWIAKLEKAPVFAFDTETDSLDN---ISANLVGLSFAIE-------------PGVAAYIPVAHD 65 (605)
T ss_dssp SSSSEECCS--HHHHHHHHHHHHTSSSEEEEEEESCSCT---TTCCEEEEEEEEE-------------TTEEEEEECCCC
T ss_pred hhheEEecC--HHHHHHHHHhcccCCeEEEEEecCCCCc---ccCceEEEEEEEc-------------CCcEEEEecccc
Confidence 345778887 7889899998877788999999998764 4578888888864 24556664322
Q ss_pred -------CCchhhHHHHHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCc
Q 009783 87 -------IPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPK 159 (526)
Q Consensus 87 -------l~~~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~ 159 (526)
+...+++..|+++|+++++.||+||+++|+..|.+ +|+ . ..+.++| |++++|+++++ .
T Consensus 66 ~~~~~~~l~~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~-~Gi---~----l~~~~~D-T~laayLL~p~------~ 130 (605)
T 2kfn_A 66 YLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILAN-YGI---E----LRGIAFD-TMLESYILNSV------A 130 (605)
T ss_dssp STTCCCCCCHHHHHHHHHHHHTCTTSCEEESSHHHHHHHHHT-TTC---C----CCCEEEE-HHHHHHHHCTT------S
T ss_pred ccccccccCHHHHHHHHHHHHcCCCCeEEEECcHHHHHHHHH-CCC---C----CCCcccc-HHHHHHHhCCC------C
Confidence 22234667899999999999999999999999987 455 2 1245899 99999999985 3
Q ss_pred CCccHHHHHHHHcCCcCc-------ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccchhhhhh
Q 009783 160 ETKSLANICKELLDISLS-------KELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ-KGFAAGNSCSSIS 231 (526)
Q Consensus 160 ~~~gL~~Lv~~~Lg~~L~-------K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~-~g~~~~~~~~e~~ 231 (526)
.+++|+.|++++||.... |+.+.++|..+|+ +++..||+.||+++++||..|.++|++ .|.. .++.+++
T Consensus 131 ~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l~--~L~~~iE 207 (605)
T 2kfn_A 131 GRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPL--NVFENIE 207 (605)
T ss_dssp SCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH--HHHHHTH
T ss_pred CCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHH
Confidence 479999999999998753 5555668988887 779999999999999999999999987 6554 4444444
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.61 E-value=3.3e-15 Score=164.41 Aligned_cols=163 Identities=10% Similarity=-0.037 Sum_probs=133.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCcEEEEEe
Q 009783 32 SSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFK 111 (526)
Q Consensus 32 ~~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lL~~~~i~KVgh~ 111 (526)
....++|+|...... +...++.||++.. +++|+|++.. ......|+++|+|+++.||+||
T Consensus 29 ~~~~aldtE~~~~~~---~~a~Lvgisla~~--------------~~a~yIp~~~---~~~l~~Lk~lLed~~i~KV~hn 88 (592)
T 3pv8_A 29 ADKAALVVEVVEENY---HDAPIVGIAVVNE--------------HGRFFLRPET---ALADPQFVAWLGDETKKKSMFD 88 (592)
T ss_dssp CSEEEEEEECCSSSC---TTCCCCEEEEEET--------------TEEEEECHHH---HTTCHHHHHHHTCTTSEEEESS
T ss_pred ccCcEEEEEEcCCcc---CcccEEEEEEEcC--------------CceEEEccch---hhHHHHHHHHHhCCCCeEEEec
Confidence 356799999887764 5678889999984 4678887532 1245689999999999999999
Q ss_pred cHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcccccccCCCC---C
Q 009783 112 FKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSN---R 188 (526)
Q Consensus 112 ~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~L~K~~q~sdW~~---R 188 (526)
+|+|+..|.+ +|+ ...+.+|| |+||+||++++ ..+++|++|+++|||..+.+.++..+|.. .
T Consensus 89 ~K~Dl~vL~~-~Gi-------~l~g~~fD-TmLAAYLL~p~------~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~ 153 (592)
T 3pv8_A 89 SKRAAVALKW-KGI-------ELCGVSFD-LLLAAYLLDPA------QGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAV 153 (592)
T ss_dssp HHHHHHHHHH-TTC-------CCCCEEEE-HHHHHHHHCGG------GCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCC
T ss_pred hHHHHHHHHH-cCC-------CCCCccch-HHHHHHHcCCC------CCCCCHHHHHHHHcCCCCchHHHhcCccccccC
Confidence 9999999987 455 12367999 99999999986 34799999999999999998888888853 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhh
Q 009783 189 PLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGFAAGNSCSSIS 231 (526)
Q Consensus 189 PL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~e~~ 231 (526)
|..+.+..|||.||.++++|++.|.++|++.|+. .++.+++
T Consensus 154 ~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l~--~l~~~~E 194 (592)
T 3pv8_A 154 PDEPVLAEHLVRKAAAIWELERPFLDELRRNEQD--RLLVELE 194 (592)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHTH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--hHHHHHH
Confidence 5568889999999999999999999999998876 5555544
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.35 E-value=5.9e-13 Score=149.68 Aligned_cols=154 Identities=14% Similarity=0.052 Sum_probs=120.7
Q ss_pred eEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCcEEEEEec-
Q 009783 34 LVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF- 112 (526)
Q Consensus 34 ~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lL~~~~i~KVgh~~- 112 (526)
+|+||+|+++... +..+++++|++... .+.++++|+..+ ++.++.|+++|+ +++.||+||+
T Consensus 1 ~vv~D~ETtGl~~---~~d~i~~iqi~~~~------------~~~~~~~~p~~i--~~~l~~L~~~l~-~~~~kV~HNa~ 62 (698)
T 1x9m_A 1 MIVSDIEANALLE---SVTKFHCGVIYDYS------------TAEYVSYRPSDF--GAYLDALEAEVA-RGGLIVFHNGH 62 (698)
T ss_dssp CEEEEEEESSCGG---GCCCEEEEEEEETT------------TTEEEEECGGGH--HHHHHHHHHHHH-TTCCEEESSTT
T ss_pred CEEEEcCCCCcCC---CCCEEEEEEEEecC------------CCcEEEEChHHH--HHHHHHHHHHHh-cCCeEEEcCCh
Confidence 4899999998875 56799999998741 357888886533 246788999999 8999999999
Q ss_pred HHhHHHHHhhc------ccCCCccCcCCC-CceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHc-------CCcC--
Q 009783 113 KQDLIYLSSTF------CSQGCDIGFDRV-EPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELL-------DISL-- 176 (526)
Q Consensus 113 k~Dl~~L~~~~------gi~~~~~~~~~~-~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~L-------g~~L-- 176 (526)
++|+..|.+.+ |+ . .. +.++| |++++|+++++ ...++|++|++++| |..+
T Consensus 63 kfD~~~L~~~~~~~~~~Gi-~------l~~~~~~D-TmlaayLL~p~------~~~~~L~~La~~~L~~sL~~~g~~lg~ 128 (698)
T 1x9m_A 63 KYDVPALTKLAKLQLNREF-H------LPRENCID-TLVLSRLIHSN------LKDTDMGLLRSGKLPGALEAWGYRLGE 128 (698)
T ss_dssp TTHHHHHHHHHHHHHCCCC-C------CCGGGEEE-HHHHHHHHTTT------SCCCTTTTSCGGGSCSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccCCc-c------CCCCcchh-HHHHHHHhCCC------CCCCCHHHHHHHHcccchhhhcccccc
Confidence 99999998753 54 1 22 57999 99999999985 34789999999998 4333
Q ss_pred ---c-----------cccc--c-cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009783 177 ---S-----------KELQ--C-SDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGF 221 (526)
Q Consensus 177 ---~-----------K~~q--~-sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~ 221 (526)
+ |+.+ . .+|.. +++++..||+.||.++++|++.|.++|++.+.
T Consensus 129 ~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 129 MKGEYKDDFKRMLEEQGEEYVDGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCTTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred cccCHHHHhCcccccccccccccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 2211 1 27864 66899999999999999999999999988765
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.89 E-value=1.6e-09 Score=118.16 Aligned_cols=131 Identities=10% Similarity=0.007 Sum_probs=102.4
Q ss_pred CeEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCcEEEEEec
Q 009783 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (526)
Q Consensus 33 ~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lL~~~~i~KVgh~~ 112 (526)
+.+++|+|...... +...++++|++.. +.+|+++ .....|+++|+| +.||+||+
T Consensus 11 ~~valDtE~~~~~~---~~a~Lvgi~la~~--------------~~a~~i~-------~~l~~l~~~l~d--~~kV~hn~ 64 (540)
T 4dfk_A 11 EGAFVGFVLSRKEP---MWADLLALAAARG--------------GRVHRAP-------EPYKALRDLKEA--RGLLAKDL 64 (540)
T ss_dssp TTCEEEEEESSSCT---TTCCEEEEEEEET--------------TEEEECS-------SHHHHHTTCSSB--CSTTHHHH
T ss_pred CceEEEEEecCCcc---CcccEEEEEEEcC--------------CEEEEeh-------hhHHHHHHHHcC--CCEEEecc
Confidence 44999999988774 6678889999963 5778765 256789999998 88899999
Q ss_pred HHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcccccccCCCCCCCCH
Q 009783 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTE 192 (526)
Q Consensus 113 k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~L~K~~q~sdW~~RPL~~ 192 (526)
|+|+. + +|+ . . ..+|| |++++|++++ . +++|++|+++|++. |..
T Consensus 65 K~Dl~---~-~Gi---~----~-~~~fD-T~laAyLL~p-------~-~~~L~~La~~yl~~----------~gk----- 108 (540)
T 4dfk_A 65 SVLAL---R-EGL---G----L-PPGDD-PMLLAYLLDP-------S-NTTPEGVARRYGGE----------WTE----- 108 (540)
T ss_dssp HHHHH---H-TTC---C----C-CBCCC-HHHHHHHHCT-------T-CCCHHHHHHHHTSC----------CCS-----
T ss_pred HHHHH---H-cCC---C----C-Cccee-HHHHHHHhCC-------C-CCCHHHHHHHHhhh----------hcc-----
Confidence 99999 3 454 2 1 27899 9999999997 3 68999999999986 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccchhhhhh
Q 009783 193 EQKNYAAIDAHCLIEIFNIFQVKV-AQKGFAAGNSCSSIS 231 (526)
Q Consensus 193 ~qi~YAA~DA~~ll~L~~~L~~~L-~~~g~~~~~~~~e~~ 231 (526)
+|+.||.++++||..|.++| ++.++. .++.+++
T Consensus 109 ----~a~~DA~~t~~L~~~L~~~L~~~~~~~--~~~~~iE 142 (540)
T 4dfk_A 109 ----EAGERAALSERLFANLWGRLEGEERLL--WLYREVE 142 (540)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTTTCHHHH--HHHHHTH
T ss_pred ----chHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHH
Confidence 37799999999999999999 555544 4444433
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.16 E-value=1.9e-05 Score=76.56 Aligned_cols=171 Identities=13% Similarity=0.073 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEEcCCCCCCCCCCceEEEEEeccC-CCC-CCCCCCCCCCCEEEEEeCC---C-------
Q 009783 19 SPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQP-GPR-FNPESDESNASVVFLLDLS---S------- 86 (526)
Q Consensus 19 ~~el~~~~~~L~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~-~~~-~~~~~~~~~~~~v~liD~~---~------- 86 (526)
.+++..+...+.....|+||+|+++..+ . .-.+|+|+... +.+ .|- ......-..++.+. .
T Consensus 24 ~~~~~~l~~~l~~~~~vviD~ETTGl~~---~--~~~IieIgav~~~~~~~g~--i~~~~~f~~~v~P~~~~~i~~~~~~ 96 (235)
T 3v9w_A 24 NAQLTGLCDRFRGFYPVVIDVETAGFNA---K--TDALLEIAAITLKMDEQGW--LMPDTTLHFHVEPFVGANLQPEALA 96 (235)
T ss_dssp -----CHHHHTTTEEEEEEEEEESSSCT---T--TBCEEEEEEEEEEECTTSC--EEEEEEEEEEBCCCTTCBCCHHHHH
T ss_pred cccccCchhcccCCcEEEEEEeCCCCCC---C--CCeEEEEEEEEEEEcCCCc--ccccceEEEEECCCCCCCCCHHHHH
Confidence 4567777788888889999999998764 2 23466664420 000 000 00000011123331 0
Q ss_pred ---CCc----------hhhHHHHHHhhCC-------CCcEEEEEecHHhHHHHHhhcccCCCcc-CcCCCCceeeHHHHH
Q 009783 87 ---IPL----------PSIWELLKELFVS-------PDILKLGFKFKQDLIYLSSTFCSQGCDI-GFDRVEPYLDITSIY 145 (526)
Q Consensus 87 ---l~~----------~~~~~~L~~lL~~-------~~i~KVgh~~k~Dl~~L~~~~gi~~~~~-~~~~~~~~~Dlt~La 145 (526)
+.. .+++..|.+++.+ .+...||||+++|+..|...+...|+.. .| ....++| |+.+
T Consensus 97 i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~-~~~~~~D-t~~l 174 (235)
T 3v9w_A 97 FNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPF-HPFATFD-TAAL 174 (235)
T ss_dssp HHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCE-EEEEEEE-HHHH
T ss_pred HhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCC-CCCcEEE-hHHH
Confidence 111 1244555555542 4677899999999999976543223210 00 0135889 7777
Q ss_pred HHhhccccCCCCCcCCccHHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009783 146 NHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGFA 222 (526)
Q Consensus 146 ~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~ 222 (526)
++.+.+ ..+|+.|++.+ |+++.. ....+|..||.++.+|+..|.+++++.|.+
T Consensus 175 a~~~~p---------~~~L~~l~~~~-gi~~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~~~~ 227 (235)
T 3v9w_A 175 AGLALG---------QTVLSKACQTA-GMDFDS--------------TQAHSALYDTERTAVLFCEIVNRWKRLGGW 227 (235)
T ss_dssp HHHHHS---------CCSHHHHHHHH-TCCCCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHhC---------CCCHHHHHHHc-CCCCCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 777754 36899999876 654421 113469999999999999999999988766
No 12
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=97.93 E-value=1.1e-05 Score=91.93 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=88.8
Q ss_pred CeEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCcEEEEEec
Q 009783 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (526)
Q Consensus 33 ~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lL~~~~i~KVgh~~ 112 (526)
+.+++|+|..+ + ....++ +++|.. ++.++++++ . + +.|+++|+++.+ |+
T Consensus 305 ~~va~d~et~~--~---~~~~l~-vg~a~~-------------~g~a~yvp~-~----~--~~Lk~lLed~~i-----n~ 353 (832)
T 1bgx_T 305 AFVGFVLSRKE--P---MWADLL-ALAAAR-------------GGRVHRAPE-P----Y--KALRDLKEARGL-----LA 353 (832)
T ss_dssp CCBEEECSSSC--T---TTCCCC-EEECBS-------------SSEEECCSC-H----H--HHHHHCSSBCBT-----TH
T ss_pred ceEEEEEecCC--c---ccCcee-EEEEEc-------------CCCEEEEEC-C----H--HHHHHHHhCCCC-----Ch
Confidence 45888888655 1 123332 567664 356777654 1 1 579999999987 99
Q ss_pred HHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcccccccCCCCCCCCH
Q 009783 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTE 192 (526)
Q Consensus 113 k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~L~K~~q~sdW~~RPL~~ 192 (526)
|+|++.|.+ +|+ . +..++| |+|++||+++ . .++|++|++++ |. +|.
T Consensus 354 K~d~~~L~~-~Gi---~-----~~~~~D-t~laayLl~p-------~-~~~l~~l~~~~-gk---------~~~------ 399 (832)
T 1bgx_T 354 KDLSVLALR-EGL---G-----LPPGDD-PMLLAYLLDP-------S-NTTPEGVARRY-GG---------EWT------ 399 (832)
T ss_dssp HHHHHHHHH-HTC---C-----CCBCCC-HHHHHHHHCT-------T-CCSTTHHHHHH-SC---------CCC------
T ss_pred HHHHHHHHH-cCC---c-----cCcccC-HHHHHHHcCC-------C-CCCHHHHHHHh-CC---------Cch------
Confidence 999999987 565 2 237799 9999999997 2 68999999999 31 231
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC
Q 009783 193 EQKNYAAIDAHCLIEIFNIFQVKVA-QKGFA 222 (526)
Q Consensus 193 ~qi~YAA~DA~~ll~L~~~L~~~L~-~~g~~ 222 (526)
++ || .||.++++|++.|.++|+ +.++.
T Consensus 400 ~~--ya-~da~~~~~l~~~l~~~L~~~~~~~ 427 (832)
T 1bgx_T 400 EE--AG-ERAALSERLFANLWGRLEGEERLL 427 (832)
T ss_dssp SS--HH-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HH--HH-HHHHHHHHHHHHHHHHHhhhhhhH
Confidence 11 88 799999999999999998 55543
No 13
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.44 E-value=0.0012 Score=61.63 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=67.6
Q ss_pred hhHHHHHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHh---hccccCCCCCcCCccHHHH
Q 009783 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHL---HHKQLGRKLPKETKSLANI 167 (526)
Q Consensus 91 ~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yL---l~~~~~~~~~~~~~gL~~L 167 (526)
+++..|.+++.+ .+.||||+.+|+..|...++ ...++|+..++... ..+. ...++|+.|
T Consensus 72 ~v~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~~----------~~~~idt~~~~~~~~~~~~p~------~~~~~L~~l 133 (189)
T 1wlj_A 72 VARLEILQLLKG--KLVVGHDLKHDFQALKEDMS----------GYTIYDTSTDRLLWREAKLDH------CRRVSLRVL 133 (189)
T ss_dssp HHHHHHHHHHTT--SEEEESSHHHHHHHTTCCCT----------TCEEEEGGGCHHHHHHHTC-----------CCHHHH
T ss_pred HHHHHHHHHHCC--CEEEECCcHHHHHHHHHhCC----------CCceechHhhhhhhhcccCCC------CCCccHHHH
Confidence 355667778864 45699999999999876421 13578943332211 1111 247899999
Q ss_pred HHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009783 168 CKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGFA 222 (526)
Q Consensus 168 v~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~ 222 (526)
+++++|+++....+. .-|..||.++.+|+..+.+++++.+..
T Consensus 134 ~~~~lgi~~~~~~~~-------------H~Al~Da~ata~l~~~l~~~~~~~~~~ 175 (189)
T 1wlj_A 134 SERLLHKSIQNSLLG-------------HSSVEDARATMELYQISQRIRARRGLP 175 (189)
T ss_dssp HHHHTCCCCSCCTTC-------------CCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCCCCCCCCC-------------cCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999887542111 128899999999999999988877655
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.41 E-value=0.0012 Score=61.45 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=64.6
Q ss_pred hhHHHHHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHH
Q 009783 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (526)
Q Consensus 91 ~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~ 170 (526)
+++..|..++.+. +.||||..+|+..|.+.+.-.|+.+ ....++|+..++..+. . ...++|+.+++.
T Consensus 81 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~---~~~~~iDt~~l~~~~~-~-------~~~~~L~~l~~~ 147 (186)
T 2p1j_A 81 EVLPEFLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLD---WERPYIDTLALAKSLL-K-------LRSYSLDSVVEK 147 (186)
T ss_dssp HHHHHHHHHSSSC--EEEETTHHHHHHHHHHHHHHHHCCC---CCCCEEEHHHHHHHHT-C-------CSCCSHHHHHHH
T ss_pred HHHHHHHHHHCCC--EEEEECcHHHHHHHHHHHHHcCCCC---CCCCEEeHHHHHHHHh-h-------cCCCCHHHHHHH
Confidence 3456677777653 5699999999999875432222221 1246889544555444 2 257899999986
Q ss_pred HcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009783 171 LLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKG 220 (526)
Q Consensus 171 ~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g 220 (526)
+|++.... ..|..||.++.+|+..+.++.+++|
T Consensus 148 -~gi~~~~~----------------H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 148 -LGLGPFRH----------------HRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp -TTCCSTTC----------------CHHHHHHHHHHHHHHHHTTCC----
T ss_pred -cCCCCCCC----------------cCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57764321 3588999999999998877655544
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=96.60 E-value=0.031 Score=53.27 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=61.2
Q ss_pred CcEEEEEecHHhHHHHHhhcccCCCc--cCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCccccc
Q 009783 104 DILKLGFKFKQDLIYLSSTFCSQGCD--IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQ 181 (526)
Q Consensus 104 ~i~KVgh~~k~Dl~~L~~~~gi~~~~--~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~L~K~~q 181 (526)
..+.||||..+|+..|.+.+...|+. | | ....++|+..++..+. + ..+|..|++. +|+++....
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p-~-~~~~~iDt~~l~~~~~-~---------~~~L~~l~~~-~gi~~~~~~- 191 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNP-F-HPFSSFDTATLAGLAY-G---------QTVLAKACQA-AGMEFDNRE- 191 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCC-E-EEEEEEEHHHHHHHHH-S---------CCSHHHHHHH-TTCCCCTTS-
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCC-c-cccceeeHHHHHHHHc-C---------CCCHHHHHHH-cCCCcCCCC-
Confidence 45679999999999987654322321 1 1 0135789544555443 2 3589999886 587653111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009783 182 CSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGFA 222 (526)
Q Consensus 182 ~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~ 222 (526)
. .-|..||.++.+|+..+.+++.+.|.+
T Consensus 192 ~-------------H~Al~Da~~ta~l~~~l~~~~~~~~~~ 219 (224)
T 2f96_A 192 A-------------HSARYDTEKTAELFCGIVNRWKEMGGW 219 (224)
T ss_dssp C-------------CCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred C-------------CChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 228899999999999999999887654
No 16
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=95.46 E-value=0.06 Score=51.66 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=67.1
Q ss_pred hhHHHHHHhhCCC--CcEEEEEec-HHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhcccc-CCCCC-cCCccHH
Q 009783 91 SIWELLKELFVSP--DILKLGFKF-KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQL-GRKLP-KETKSLA 165 (526)
Q Consensus 91 ~~~~~L~~lL~~~--~i~KVgh~~-k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~-~~~~~-~~~~gL~ 165 (526)
++...|..++..- ..+.|+||. .+|+..|.+.+.-.|+. +.....++|+..++..+..... ....| ...++|+
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~--~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~ 175 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGAR--LPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLG 175 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCC--CCTTCEEEEHHHHHHHHHHHC----------CCSHH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCC--CCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHH
Confidence 3456777888762 256699999 99999987543322322 1111358994445555541000 00001 2478999
Q ss_pred HHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 166 NICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (526)
Q Consensus 166 ~Lv~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~ 217 (526)
.++++++|++... ...|..||.++.+|+..+.+++.
T Consensus 176 ~l~~~~~gi~~~~----------------~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 176 SLFHRYFRAEPSA----------------AHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp HHHHHHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHhCCCCcc----------------CccHHHHHHHHHHHHHHHHHHHH
Confidence 9999888876532 23488999999999999887664
No 17
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=95.10 E-value=0.072 Score=51.64 Aligned_cols=110 Identities=13% Similarity=0.065 Sum_probs=68.9
Q ss_pred hhHHHHHHhhCC--CCcEEEEEec-HHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccC-CCCCcCCccHHH
Q 009783 91 SIWELLKELFVS--PDILKLGFKF-KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLG-RKLPKETKSLAN 166 (526)
Q Consensus 91 ~~~~~L~~lL~~--~~i~KVgh~~-k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~-~~~~~~~~gL~~ 166 (526)
+++..|..++.+ +..+.|+||. .+|+..|.+.+.-.|+...+ ....++|+..++..+...... .......++|++
T Consensus 103 ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~-~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~ 181 (242)
T 3mxm_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (242)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHHHHCC------CCCSHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCc-cCCeEeehHHHHHHHHhhcCccccCCCCCcCHHH
Confidence 456667777776 2245699995 99999997654333432100 112678955555544421000 000135789999
Q ss_pred HHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 167 ICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (526)
Q Consensus 167 Lv~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~ 217 (526)
|+++++|++....+. |..||.++.+|+..+.+++.
T Consensus 182 l~~~~~gi~~~~~H~----------------Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 182 IYTRLYWQAPTDSHT----------------AEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHHHHHSSCCSSTTS----------------HHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHhCCCCCCCcC----------------hHHHHHHHHHHHHHHHHHHH
Confidence 999999988653332 88999999999888877654
No 18
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=95.02 E-value=0.078 Score=49.15 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=62.3
Q ss_pred hhHHHHHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCc-cCcCCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHH
Q 009783 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCD-IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (526)
Q Consensus 91 ~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~-~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~ 169 (526)
+++..|..++.+. ..||||..+|+..|...+.-.|+. |.|.....++|+..++..+ .++ ..++|..|++
T Consensus 84 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~-~p~-------~~~~L~~l~~ 153 (194)
T 2gui_A 84 EVADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKM-FPG-------KRNSLDALCA 153 (194)
T ss_dssp HHHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHH-STT-------SCCSHHHHHH
T ss_pred HHHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHH-cCC-------CCCCHHHHHH
Confidence 3556677788754 358999999999987643322322 1111014689944455443 342 3579999998
Q ss_pred HHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (526)
Q Consensus 170 ~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (526)
. +|++.... .. .-|..||.++.+|+..+..
T Consensus 154 ~-~gi~~~~~-~~-------------H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 154 R-YEIDNSKR-TL-------------HGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp H-TTCCCTTC-SS-------------CCHHHHHHHHHHHHHHHTC
T ss_pred H-cCcCCCCC-CC-------------CChHHHHHHHHHHHHHHHh
Confidence 6 58765321 01 1288999999999988764
No 19
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=94.92 E-value=0.28 Score=52.42 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=62.6
Q ss_pred hHHHHHHhhCCCCcEEEEEe-cHHhHHHHHhhcccCCCccCcCC----CCceeeHHHHHHHhhc--cccCCC-----CCc
Q 009783 92 IWELLKELFVSPDILKLGFK-FKQDLIYLSSTFCSQGCDIGFDR----VEPYLDITSIYNHLHH--KQLGRK-----LPK 159 (526)
Q Consensus 92 ~~~~L~~lL~~~~i~KVgh~-~k~Dl~~L~~~~gi~~~~~~~~~----~~~~~Dlt~La~yLl~--~~~~~~-----~~~ 159 (526)
++..|..++..++.+.|||| +.+|...|...+.-.|+.+ +.. ....+|+..++..+.. +. +.. ...
T Consensus 84 vl~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~-~~~~w~~~~~~iDtl~l~r~~~~~~~~-~~~wP~~~~~~ 161 (482)
T 2qxf_A 84 FAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP-YAWSWQHDNSRWDLLDVMRACYALRPE-GINWPENDDGL 161 (482)
T ss_dssp HHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCS-SGGGTGGGCEEEEHHHHHHHHHHHCCT-TSCCCBCTTSS
T ss_pred HHHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCc-cccccccCCceeeHHHHHHHHHHhCcc-cccCcccccCC
Confidence 44556677875566779999 8999998875433223221 110 0457785556554431 10 000 012
Q ss_pred CCccHHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 160 ETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (526)
Q Consensus 160 ~~~gL~~Lv~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~ 215 (526)
.+++|+.|++. +|++....+ -|..||.++.+|+..+.++
T Consensus 162 ~s~kL~~L~~~-~Gi~~~~aH----------------rAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 162 PSFRLEHLTKA-NGIEHSNAH----------------DAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp BCCCHHHHHHH-TTCCCC-------------------CTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-cCCCCCCCC----------------CHHHHHHHHHHHHHHHHHh
Confidence 47899999875 477653222 2678999999998887653
No 20
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=94.19 E-value=0.19 Score=50.68 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=68.6
Q ss_pred hhHHHHHHhhCC--CCcEEEEEe-cHHhHHHHHhhcccCCCccCcCCCCceeeHHHHHHHhhccccC-CCCCcCCccHHH
Q 009783 91 SIWELLKELFVS--PDILKLGFK-FKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLG-RKLPKETKSLAN 166 (526)
Q Consensus 91 ~~~~~L~~lL~~--~~i~KVgh~-~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~-~~~~~~~~gL~~ 166 (526)
+++..|.+++.+ +..+.|+|| +.+|+..|.+.+.-.|+...+ ....++|...++..+...... ......+++|++
T Consensus 103 ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~-~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~ 181 (314)
T 3u3y_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (314)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHTTC-------CCCCSHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC-CCceEEeHHHHHHHHHHHhCccccccCCCCCHHH
Confidence 455666777776 225679999 999999997654333432100 113478943334434321100 001125789999
Q ss_pred HHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 167 ICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (526)
Q Consensus 167 Lv~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~ 217 (526)
++++++|++....+. |..||.++.+|+..+.+++.
T Consensus 182 L~~~l~gi~~~~aHr----------------Al~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 182 IYTRLYWQAPTDSHT----------------AEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp HHHHHHSSCCSCSSS----------------HHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHhcCCCCCCCCC----------------HHHHHHHHHHHHHHHHHHHH
Confidence 999988988653332 88999999999998877654
No 21
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=92.28 E-value=0.36 Score=44.85 Aligned_cols=98 Identities=9% Similarity=0.109 Sum_probs=61.5
Q ss_pred hHHHHHHhhCCCC-----cEEEEEecHHhHH-HHHhhcccCCCccCcCC-CCceeeHHHHHHHhhccccCCCCCcCCccH
Q 009783 92 IWELLKELFVSPD-----ILKLGFKFKQDLI-YLSSTFCSQGCDIGFDR-VEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (526)
Q Consensus 92 ~~~~L~~lL~~~~-----i~KVgh~~k~Dl~-~L~~~~gi~~~~~~~~~-~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL 164 (526)
++..|..++.+.. ..-|+||...|+. .|.+.+...|+. +.. ...++|+..++..+.... ...++|
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~--~p~~~~~~~dt~~l~~~~~~~~------~~~~~L 159 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK--YPPFAKKWINIRKSYGNFYKVP------RSQTKL 159 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCC--CCGGGSEEEEHHHHHHHHHTCC------GGGCSH
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCC--CcccccceEEHHHHHHHHhCCC------CccchH
Confidence 4455566666533 3469999999996 886543222322 111 126899656666554321 235799
Q ss_pred HHHHHHHcCCcCcc-cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 165 ANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (526)
Q Consensus 165 ~~Lv~~~Lg~~L~K-~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (526)
+.+++. +|++... .+ -|..||.++.+|+..+.+
T Consensus 160 ~~l~~~-~gi~~~~~~H----------------~Al~Da~~ta~l~~~l~~ 193 (204)
T 1w0h_A 160 TIMLEK-LGMDYDGRPH----------------CGLDDSKNIARIAVRMLQ 193 (204)
T ss_dssp HHHHHH-TTCCCCSCTT----------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCCcc----------------CcHHHHHHHHHHHHHHHH
Confidence 999977 5876531 12 288999999999988865
No 22
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=90.49 E-value=0.24 Score=44.94 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=22.4
Q ss_pred ChHHHHHhhhcCCcEEEecChhHHHhhc
Q 009783 392 EPRELIDQTSKEKRVLLTRDAKLLRHQY 419 (526)
Q Consensus 392 ~d~~ll~~A~~E~RiiLTrd~~l~~~~~ 419 (526)
.|..++.+|.+.+.+|+|.|..+-+.+.
T Consensus 85 ~D~~lIaLA~~l~~~lvT~D~~l~~vA~ 112 (165)
T 2lcq_A 85 ADIEVLALAYELKGEIFSDDYNVQNIAS 112 (165)
T ss_dssp HHHHHHHHHHHHTCCEECCCHHHHHHHH
T ss_pred HHHHHHHhHHHhCCeEEcCcHHHHHHHH
Confidence 4678999999989999999987655443
No 23
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.32 E-value=0.32 Score=35.44 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=13.3
Q ss_pred CceeecCCCCeEEec
Q 009783 493 LQFWQCMDCNQLYWE 507 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~ 507 (526)
..-+.|++||-+||.
T Consensus 35 ~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 35 GDRWACGKCGYTEWK 49 (50)
T ss_dssp SSEEECSSSCCEEEC
T ss_pred CCeEECCCCCCEEEC
Confidence 467899999999996
No 24
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=86.24 E-value=12 Score=42.29 Aligned_cols=115 Identities=16% Similarity=0.224 Sum_probs=69.9
Q ss_pred hhHHHHHHhhC--CCCcEEEEEecH-HhHHHHHhhcccCCCccCcC-------------------CCCceeeHHHHHHHh
Q 009783 91 SIWELLKELFV--SPDILKLGFKFK-QDLIYLSSTFCSQGCDIGFD-------------------RVEPYLDITSIYNHL 148 (526)
Q Consensus 91 ~~~~~L~~lL~--~~~i~KVgh~~k-~Dl~~L~~~~gi~~~~~~~~-------------------~~~~~~Dlt~La~yL 148 (526)
+++..+..++. ||+++ +|||.. +|+..|......+|+...+. .-...+|+-.++...
T Consensus 189 ~LL~~f~~~i~~~dPDii-vGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~ 267 (775)
T 1qht_A 189 EMIKRFLRVVREKDPDVL-ITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRT 267 (775)
T ss_dssp HHHHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEE-EEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHh
Confidence 34555555444 67754 899986 59988764422223221110 013477965565554
Q ss_pred hccccCCCCCcCCccHHHHHHHHcCCcCcc--ccccc-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 149 HHKQLGRKLPKETKSLANICKELLDISLSK--ELQCS-DWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (526)
Q Consensus 149 l~~~~~~~~~~~~~gL~~Lv~~~Lg~~L~K--~~q~s-dW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (526)
.. ..+++|.++++.+||..-.. ..+.. -|...+-...-+.|...||..++.|+..+..
T Consensus 268 ~~--------l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 268 IN--------LPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp SC--------CSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC--------cCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 32 25789999999999975321 11222 2544431266789999999999999876654
No 25
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=85.67 E-value=5.9 Score=40.75 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=64.6
Q ss_pred hhHHHHHHhh--CCCCcEEEEEecH-HhHHHHHhh----ccc--------CCCc------cCc------CCCC-ceeeHH
Q 009783 91 SIWELLKELF--VSPDILKLGFKFK-QDLIYLSST----FCS--------QGCD------IGF------DRVE-PYLDIT 142 (526)
Q Consensus 91 ~~~~~L~~lL--~~~~i~KVgh~~k-~Dl~~L~~~----~gi--------~~~~------~~~------~~~~-~~~Dlt 142 (526)
+++..+..++ .+|+++ +|||.. +|+..|... +|+ .|-. ..+ ...+ .++|+-
T Consensus 193 ~LL~~f~~~i~~~dPDii-~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~~ 271 (388)
T 1noy_A 193 DMLMEYINLWEQKRPAIF-TGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYL 271 (388)
T ss_dssp HHHHHHHHHHHHSCCSEE-ECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHH
T ss_pred HHHHHHHHHHHHhCCcEE-EecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEHH
Confidence 3555555555 578765 899985 598876432 221 0100 000 0011 177865
Q ss_pred HHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcc-cccccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009783 143 SIYNHLHHKQLGRKLPKETKSLANICKELLDISLSK-ELQCSD-WSNRPLTEEQKNYAAIDAHCLIEIFNIF 212 (526)
Q Consensus 143 ~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~L~K-~~q~sd-W~~RPL~~~qi~YAA~DA~~ll~L~~~L 212 (526)
.++..+-... ..+++|+++++.+||..-.. ..+... |. .-...-+.|...||..+++|+..+
T Consensus 272 ~~~k~~~~~~------l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~--~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 272 DLYKKFAFTN------LPSFSLESVAQHETKKGKLPYDGPINKLRE--TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp HHHHHHTCCC------CSCCSHHHHHHHHHSCCCCCCSSCGGGHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCcCc------ccCCCHHHHHHHHhCCCCCCcHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555531110 25799999999999864211 122222 32 111345899999999999999874
No 26
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=85.55 E-value=3.2 Score=41.10 Aligned_cols=98 Identities=10% Similarity=0.065 Sum_probs=61.6
Q ss_pred hHHHHHHhhCCC-----CcEEEEEecHHhHH-HHHhhcccCCCc-cCcCCCCceeeHHHHHHHhhccccCCCCCcCCccH
Q 009783 92 IWELLKELFVSP-----DILKLGFKFKQDLI-YLSSTFCSQGCD-IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (526)
Q Consensus 92 ~~~~L~~lL~~~-----~i~KVgh~~k~Dl~-~L~~~~gi~~~~-~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL 164 (526)
++..|..++.+. ....|+||...|+. .|...+...|+. |. ....++|+..++..+.+.. ...++|
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~--~~~~~iDt~~l~~~~~~~~------~~~~~L 227 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP--FAKKWINIRKSYGNFYKVP------RSQTKL 227 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG--GGSEEEEHHHHHHHHHTCC------GGGCSH
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCc--ccchHHHHHHHHHHHhCCC------CCCccH
Confidence 455566677654 13569999999999 886543222322 10 1136889544555443211 135899
Q ss_pred HHHHHHHcCCcCcc-cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 165 ANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (526)
Q Consensus 165 ~~Lv~~~Lg~~L~K-~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (526)
+.|++. +|++... .+ -|..||.++.+|+..+.+
T Consensus 228 ~~l~~~-~gi~~~g~~H----------------~Al~DA~ata~l~~~l~~ 261 (299)
T 1zbh_A 228 TIMLEK-LGMDYDGRPN----------------CGLDDSKNIARIAVRMLQ 261 (299)
T ss_dssp HHHHHH-TTCCCCSCTT----------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCCCC----------------ChHHHHHHHHHHHHHHHH
Confidence 999986 6776531 12 288999999999988765
No 27
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=85.05 E-value=13 Score=33.36 Aligned_cols=32 Identities=16% Similarity=-0.062 Sum_probs=23.0
Q ss_pred hHHHHHHhhCCC----CcEEEEEecHHhHHHHHhhc
Q 009783 92 IWELLKELFVSP----DILKLGFKFKQDLIYLSSTF 123 (526)
Q Consensus 92 ~~~~L~~lL~~~----~i~KVgh~~k~Dl~~L~~~~ 123 (526)
++..|..++.+- ..+.||||+.+|+..|.+.+
T Consensus 84 v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~ 119 (180)
T 2igi_A 84 AELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYM 119 (180)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHH
Confidence 455666777651 24569999999999998653
No 28
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=84.07 E-value=4.4 Score=41.27 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=61.6
Q ss_pred hHHHHHHhhCCC-----CcEEEEEecHHhHH-HHHhhcccCCCc-cCcCCCCceeeHHHHHHHhhccccCCCCCcCCccH
Q 009783 92 IWELLKELFVSP-----DILKLGFKFKQDLI-YLSSTFCSQGCD-IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (526)
Q Consensus 92 ~~~~L~~lL~~~-----~i~KVgh~~k~Dl~-~L~~~~gi~~~~-~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL 164 (526)
++..|..++.+. ..+.|+||..+|+. .|...+...|+. |. ....++|+..++..+.+.. ...++|
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~--~~~~~iDt~~l~~~~~~~~------~~~~~L 277 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP--FAKKWINIRKSYGNFYKVP------RSQTKL 277 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG--GGSEEEEHHHHHHHHHTCC------GGGGSH
T ss_pred HHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc--ccchHHHHHHHHHHHhcCC------CCCCCH
Confidence 455566677653 13569999999999 886543222322 10 1136889655555443211 135899
Q ss_pred HHHHHHHcCCcCcc-cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 165 ANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (526)
Q Consensus 165 ~~Lv~~~Lg~~L~K-~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (526)
+.|++. +|++... .+ -|..||.++.+|+..+..
T Consensus 278 ~~l~~~-~gi~~~g~~H----------------rAl~DA~ata~ll~~ll~ 311 (349)
T 1zbu_A 278 TIMLEK-LGMDYDGRPH----------------CGLDDSKNIARIAVRMLQ 311 (349)
T ss_dssp HHHHHH-TTCCCCSCTT----------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCCCC----------------CHHHHHHHHHHHHHHHHH
Confidence 999976 5776531 12 288999999999988765
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.44 E-value=0.56 Score=45.77 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=26.1
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecccchh
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAY 512 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvyW~GsH~~ 512 (526)
.+|.-|+-.+ +.....+ | ...+++.+||.||+|-+...+|.
T Consensus 199 ~~C~GC~~~l-----ppq~~~~-----------i-~~~~~Iv~Cp~CgRIL~~~~~~~ 239 (256)
T 3na7_A 199 QACGGCFIRL-----NDKIYTE-----------V-LTSGDMITCPYCGRILYAEGAYE 239 (256)
T ss_dssp TBCTTTCCBC-----CHHHHHH-----------H-HHSSSCEECTTTCCEEECSCC--
T ss_pred CccCCCCeee-----CHHHHHH-----------H-HCCCCEEECCCCCeeEEeCcchh
Confidence 5899999865 2223221 1 12467899999999877666654
No 30
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=81.46 E-value=25 Score=39.99 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=88.5
Q ss_pred CCCeEEEEEEE-cC---CCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC----------------Cch
Q 009783 31 QSSLVGLDAEW-KP---QRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI----------------PLP 90 (526)
Q Consensus 31 ~~~~Vg~D~E~-~~---~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l----------------~~~ 90 (526)
.-.+++||.|. .+ .++.. ....--++||+... ..+...++++..... +..
T Consensus 189 ~l~ilsfDIEt~s~~~g~fP~~-~~~~d~Ii~Is~~~---------~~g~~~~~~~~~~~~~~~~~~i~~~~v~~~~~E~ 258 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPDS-QKAEFPIISIALAG---------SDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEY 258 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCCT-TTCCSCEEEEEEEE---------TTSCEEEEEECSSCCCCCCEEETTEEEEEESSHH
T ss_pred CceEEEEEEEeCcCCCCCCCCc-cccCCcEEEEEEEc---------cCCCcEEEEEeCCcccccccCCCCCeEEEeCCHH
Confidence 34679999999 43 22210 11113578887641 001235666643211 123
Q ss_pred hhHHHHHHhhCCCCcEEEEEecH-HhHHHHHhhcccCCCcc---CcCC---------CCceeeHHHHHHH-hhc-cccCC
Q 009783 91 SIWELLKELFVSPDILKLGFKFK-QDLIYLSSTFCSQGCDI---GFDR---------VEPYLDITSIYNH-LHH-KQLGR 155 (526)
Q Consensus 91 ~~~~~L~~lL~~~~i~KVgh~~k-~Dl~~L~~~~gi~~~~~---~~~~---------~~~~~Dlt~La~y-Ll~-~~~~~ 155 (526)
+++..+..++.+.+ +.+|||.. +|+..|......+|+.. .|.. ....+|+-.+... .+. -.+.
T Consensus 259 ~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~- 336 (847)
T 1s5j_A 259 ELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFE- 336 (847)
T ss_dssp HHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTST-
T ss_pred HHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccc-
Confidence 56777788888886 56999986 69999864432334320 0110 1236784332211 000 0000
Q ss_pred CCCcCCccHHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 009783 156 KLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFN 210 (526)
Q Consensus 156 ~~~~~~~gL~~Lv~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~ 210 (526)
....+++|.++++.+||..-..- ...|.. .-...-+.|.-.||..++.|+.
T Consensus 337 -~kl~sysL~~Va~~~Lg~~K~dv--~~~i~~-~~~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 337 -GKYNEYNLDAVAKALLGTSKVKV--DTLISF-LDVEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp -TCCSSCSHHHHHHHHHCCCCC----SSCTTT-CCHHHHHHHHHHHHHHHHHTTT
T ss_pred -cccccccHHHHHHHHhCCCCcch--hHhhhh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 01247899999999999642111 122321 1125568999999999999853
No 31
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=79.29 E-value=1.2 Score=34.61 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=20.2
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 505 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 505 (526)
-.|+.|.++|.. . .....-+|+.||+.|
T Consensus 9 L~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKL---S--------------------ADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEE---C--------------------TTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeE---e--------------------CCCCEEEcCCCCcEe
Confidence 479999998842 1 012356799999998
No 32
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=78.64 E-value=1.3 Score=34.34 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=20.2
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 505 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 505 (526)
-+|+.|.++|.. . .....-+|+.||+.|
T Consensus 9 L~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGRLEY---H--------------------QDKQELWSRQAKLAY 36 (68)
T ss_dssp CBCSSSCCBCEE---E--------------------TTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeE---e--------------------CCCCEEEcCCCCcEe
Confidence 589999998842 0 012355799999998
No 33
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=78.59 E-value=1.3 Score=34.41 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=20.2
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 505 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 505 (526)
-+|+.|.++|.. . .....-+|+.||+.|
T Consensus 9 L~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVF---D--------------------KSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEE---E--------------------TTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeE---e--------------------CCCCEEEcCCCCcEe
Confidence 489999998842 0 012355799999998
No 34
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=77.41 E-value=1.3 Score=34.53 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=20.2
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 505 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 505 (526)
-.|+.|.++|.. . .....-+|+.||+.|
T Consensus 9 L~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEF---Q--------------------RAQAELVCNADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEE---E--------------------TTTTEEEETTTTEEE
T ss_pred eECCCCCCcCEE---e--------------------CCCCEEEcCCCCcee
Confidence 589999998842 0 012355799999998
No 35
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=75.98 E-value=1.1 Score=33.08 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=24.7
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 503 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 503 (526)
-+|..|+-.--+.. .+.. ..||++. |+..-+-|+||.||-
T Consensus 4 y~C~vCGyvYd~~~---Gdp~------~gi~pGt~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 4 YTCTVCGYIYDPED---GDPD------DGVNPGTDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp EEETTTCCEECTTT---CBGG------GTBCTTCCGGGSCTTCBCTTTCC
T ss_pred eECCCCCeEECCCc---CCcc------cCcCCCCChhHCCCCCcCcCCCC
Confidence 37999997542110 1110 2355554 667778899999995
No 36
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=75.79 E-value=17 Score=41.86 Aligned_cols=114 Identities=16% Similarity=0.196 Sum_probs=65.6
Q ss_pred hhHHHHHHhh--CCCCcEEEEEecH-HhHHHHHhhcccCCCcc--Cc----------------------------CCC-C
Q 009783 91 SIWELLKELF--VSPDILKLGFKFK-QDLIYLSSTFCSQGCDI--GF----------------------------DRV-E 136 (526)
Q Consensus 91 ~~~~~L~~lL--~~~~i~KVgh~~k-~Dl~~L~~~~gi~~~~~--~~----------------------------~~~-~ 136 (526)
+++..+..++ .||+|+ +|||.. +|+..|....-.+|+.. .+ ... .
T Consensus 315 eLL~~F~~~i~~~DPDII-vGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR 393 (919)
T 3iay_A 315 EMLSNWRNFIIKVDPDVI-IGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGR 393 (919)
T ss_dssp HHHHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTC
T ss_pred HHHHHHHHHHHHhCCCEE-EecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCe
Confidence 4555555555 368874 799996 69998853321122210 00 000 1
Q ss_pred ceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcc--cccccCC-CCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 009783 137 PYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSK--ELQCSDW-SNRPLT-EEQKNYAAIDAHCLIEIFNIF 212 (526)
Q Consensus 137 ~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~L~K--~~q~sdW-~~RPL~-~~qi~YAA~DA~~ll~L~~~L 212 (526)
..+|+-.++..... ..+++|.++++.+||..-.. ..++.+| ...+-. ..-+.|...||..+++|+..+
T Consensus 394 ~~lDl~~~~k~~~~--------l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 394 LQLDLLQFIQREYK--------LRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEEEHHHHHHHHCC--------CSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEhHHHHHhhcC--------CCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36786555554322 36899999999999964321 1222222 221111 334799999999999999887
Q ss_pred H
Q 009783 213 Q 213 (526)
Q Consensus 213 ~ 213 (526)
.
T Consensus 466 ~ 466 (919)
T 3iay_A 466 M 466 (919)
T ss_dssp T
T ss_pred h
Confidence 3
No 37
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=73.15 E-value=3.7 Score=40.95 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=57.3
Q ss_pred hHHHHHHhhCCCCcEEEEEec------HHhH-HHHHhhcccCCCccCcC-CCCceeeHHHHHHHhhccccCCCCCcCCcc
Q 009783 92 IWELLKELFVSPDILKLGFKF------KQDL-IYLSSTFCSQGCDIGFD-RVEPYLDITSIYNHLHHKQLGRKLPKETKS 163 (526)
Q Consensus 92 ~~~~L~~lL~~~~i~KVgh~~------k~Dl-~~L~~~~gi~~~~~~~~-~~~~~~Dlt~La~yLl~~~~~~~~~~~~~g 163 (526)
++..|..++.+..+ |+||+ ..|+ ..|...+...|+. +. ....++|+..++..+.... ........++
T Consensus 98 vl~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~--~p~~~~~~iDt~~l~~~~~~~~-~~~~~~~~~~ 172 (308)
T 3cg7_A 98 VYEQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQ--MPAFFRQYINLYKIFTNEMDRM-GPKELSATTN 172 (308)
T ss_dssp HHHHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCC--CCGGGSEEEEHHHHHHHHHHHH-CCCCCCCCSH
T ss_pred HHHHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCC--CchhhcceeeHHHHHHHHhccc-cccccccCcC
Confidence 44555566665433 56666 8998 5665433222322 11 1135789655766554321 0000012578
Q ss_pred HHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 164 LANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (526)
Q Consensus 164 L~~Lv~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (526)
|.+|++ .+|++.... . .-|..||.++.+|+..|.+
T Consensus 173 L~~l~~-~~gi~~~~~--~-------------HrAl~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 173 IGKMNE-YYDLPTIGR--A-------------HDAMDDCLNIATILQRMIN 207 (308)
T ss_dssp HHHHHH-HTTCCCCSC--T-------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCCCC--C-------------cCHHHHHHHHHHHHHHHHH
Confidence 999995 567765321 0 1278899999999988765
No 38
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=70.73 E-value=2.7 Score=31.13 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=14.5
Q ss_pred CceeecCCCCeEEeccc
Q 009783 493 LQFWQCMDCNQLYWEVM 509 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~Gs 509 (526)
...+.|++||-.||.+.
T Consensus 34 ~dr~~C~kCgyt~~~~~ 50 (55)
T 2k4x_A 34 ADRYSCGRCGYTEFKKA 50 (55)
T ss_dssp SSEEECTTTCCCEECCC
T ss_pred CCEEECCCCCCEEEeCc
Confidence 45899999999999874
No 39
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=70.25 E-value=1.8 Score=34.15 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=24.8
Q ss_pred CceeecCCCCeEEecccchhhHHhhhhhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYLFIFLTPAY 521 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r~~~~~~~~ 521 (526)
-..|.|+.||-.|+...+.+|+-.+|.+|
T Consensus 34 Vp~~~C~~CGE~~~~~e~~~~~~~~~~~f 62 (78)
T 3ga8_A 34 IHGLYCVHCEESIMNKEESDAFMAQVKAF 62 (78)
T ss_dssp EEEEEETTTCCEECCHHHHHHHHHHHHHH
T ss_pred ceeEECCCCCCEEECHHHHHHHHHHHHHH
Confidence 36899999999999999999977776654
No 40
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=69.53 E-value=2.7 Score=45.24 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=24.3
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009783 372 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 404 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 404 (526)
|+|+||..||+|.++.+.+.-+..+...|.++|
T Consensus 54 laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g 86 (536)
T 4dlp_A 54 MARFQRLNGMDVYFLTGTDEHGIKMLQSARKEG 86 (536)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHhcCCcEEEecCcCCcchHHHHHHHHcC
Confidence 799999999999887653333456777776654
No 41
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=68.88 E-value=3.1 Score=32.12 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=19.6
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 505 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 505 (526)
-.|+.|.++|.. . ....--.|+.||..|
T Consensus 11 L~CP~ck~~L~~---~--------------------~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGPLRY---L--------------------ESEQLLVNERLNLAY 38 (67)
T ss_dssp CBCTTTCCBCEE---E--------------------TTTTEEEETTTTEEE
T ss_pred hCCCCCCCcCeE---e--------------------CCCCEEEcCCCCccc
Confidence 589999998842 0 012234699999998
No 42
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=68.72 E-value=2.9 Score=29.98 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=10.5
Q ss_pred ceeecCCCCeEEe
Q 009783 494 QFWQCMDCNQLYW 506 (526)
Q Consensus 494 ~F~~C~~CgkvyW 506 (526)
.-..|+.||-+|=
T Consensus 23 gelvC~~CG~v~~ 35 (50)
T 1pft_A 23 GEIVCAKCGYVIE 35 (50)
T ss_dssp TEEEESSSCCBCC
T ss_pred CeEECcccCCccc
Confidence 4578999999873
No 43
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=68.62 E-value=8.5 Score=36.16 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=55.8
Q ss_pred hHHHHHHhhCCCCcEEEEEec--------HHhHHH-HHhhcccCCCccCcCCCCceeeHHHHHHHhhccccCCCCCcCCc
Q 009783 92 IWELLKELFVSPDILKLGFKF--------KQDLIY-LSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETK 162 (526)
Q Consensus 92 ~~~~L~~lL~~~~i~KVgh~~--------k~Dl~~-L~~~~gi~~~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~ 162 (526)
++..+..++.+..+ ||||. ..|+.. |.+.+...|+.. ......++|+.......... ...+
T Consensus 107 v~~~f~~~l~~~~l--v~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~-p~~~~~~iD~~~~~~~~~~~-------~p~~ 176 (224)
T 2xri_A 107 VLERVDEWMAKEGL--LDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPV-ADYFKQWINLKKAYSFAMGC-------WPKN 176 (224)
T ss_dssp HHHHHHHHHHHTTT--TSTTSCEEEEESSSHHHHTHHHHHHHHHTCCC-CGGGSCEEEHHHHHHHHHTS-------CCTT
T ss_pred HHHHHHHHHhhccc--ccCCCceEEEEeChhhHHHHHHHHHHHhCCCC-cccccceEeHHHHHHHHhcc-------CCCC
Confidence 45556667766544 78888 999984 643322223221 00113688954333322211 1247
Q ss_pred cHHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 163 SLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (526)
Q Consensus 163 gL~~Lv~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (526)
+|..|++ .+|++... +. .-|..||.++.+|+..|..
T Consensus 177 ~L~~l~~-~~gi~~~~--~~-------------H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 177 GLLDMNK-GLSLQHIG--RP-------------HSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp THHHHHH-HTTCCCCS--CT-------------TCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHH-HcCCCCCC--CC-------------cChHHHHHHHHHHHHHHHH
Confidence 9999987 55765421 11 1288999999999988764
No 44
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=67.72 E-value=25 Score=39.62 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=82.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCceEEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC-------------CchhhHHHHHH
Q 009783 32 SSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI-------------PLPSIWELLKE 98 (526)
Q Consensus 32 ~~~Vg~D~E~~~~~~~~~~~~~vaLiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l-------------~~~~~~~~L~~ 98 (526)
-.+++||.|... . + .+++|+..+ + ....++.+..... +..+++..+..
T Consensus 153 lrilsfDIE~~~-~------g--~i~~I~~~~-----~-----~~~~v~~l~~~~~~~~~~~~~V~~f~~E~~lL~~f~~ 213 (786)
T 3k59_A 153 LKWVSIDIETTR-H------G--ELYCIGLEG-----C-----GQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNA 213 (786)
T ss_dssp CCEEEEEEEECT-T------S--CEEEEEEEE-----T-----TEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHH
T ss_pred CeEEEEEEEEcC-C------C--CEEEEEecC-----C-----CCCeEEEEecCCCCCCCCCceEEEeCCHHHHHHHHHH
Confidence 468999999762 1 1 266666531 0 1245555543320 11234444444
Q ss_pred hhC--CCCcEEEEEecHH-hHHHHHhhcccCCCccCcC--------------------CC--CceeeHHHHHHHhhcccc
Q 009783 99 LFV--SPDILKLGFKFKQ-DLIYLSSTFCSQGCDIGFD--------------------RV--EPYLDITSIYNHLHHKQL 153 (526)
Q Consensus 99 lL~--~~~i~KVgh~~k~-Dl~~L~~~~gi~~~~~~~~--------------------~~--~~~~Dlt~La~yLl~~~~ 153 (526)
++. +|+++ +|||..+ |+..|......+|+...+. .. ...+|+-.+.....
T Consensus 214 ~i~~~dPDii-~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~---- 288 (786)
T 3k59_A 214 WFANYDPDVI-IGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAF---- 288 (786)
T ss_dssp HHHHHCCSEE-EESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTT----
T ss_pred HHHHcCCCEE-EecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhcc----
Confidence 443 67764 8999884 9988853311112111000 00 22678433333211
Q ss_pred CCCCCcCCccHHHHHHHHcCCcCcc------cccccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009783 154 GRKLPKETKSLANICKELLDISLSK------ELQCSD-WSNRPLTEEQKNYAAIDAHCLIEIFNIF 212 (526)
Q Consensus 154 ~~~~~~~~~gL~~Lv~~~Lg~~L~K------~~q~sd-W~~RPL~~~qi~YAA~DA~~ll~L~~~L 212 (526)
.+..+++|.++++.+||..-.. ..+... |... +..-+.|...||..+++|+..+
T Consensus 289 ---~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~--~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 289 ---WNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAED--KPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp ---CCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 1135899999999999965210 112222 2211 1456899999999999998875
No 45
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=66.96 E-value=2.8 Score=30.64 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=24.6
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 503 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 503 (526)
-+|..|+-.-.+.. .+. ...||++. |+..-+-|.||.||-
T Consensus 4 y~C~~CGyvYd~~~---Gdp------~~gi~pGt~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 4 YVCTVCGYEYDPAK---GDP------DSGIKPGTKFEDLPDDWACPVCGA 44 (52)
T ss_dssp EECSSSCCCCCTTT---CCT------TTTCCSSCCTTSSCTTCCCSSSCC
T ss_pred EEeCCCCeEEcCCc---CCc------ccCcCCCCchHHCCCCCcCCCCCC
Confidence 37999997542110 010 12456655 566677899999996
No 46
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=66.88 E-value=0.7 Score=39.87 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=22.9
Q ss_pred ceeecCCCCeEEecccchhhHHhhhhhh
Q 009783 494 QFWQCMDCNQLYWEVMSAYLFIFLTPAY 521 (526)
Q Consensus 494 ~F~~C~~CgkvyW~GsH~~r~~~~~~~~ 521 (526)
..|+|+.||..|+......+...++..+
T Consensus 35 ~~~~C~~CGE~~~d~e~~~~~~~~~~e~ 62 (133)
T 3o9x_A 35 HGLYCVHCEESIMNKEESDAFMAQVKAF 62 (133)
T ss_dssp EEEEESSSSCEECCHHHHHHHHHHHHHH
T ss_pred ceeECCCCCCEeecHHHHHHHHHHHHHH
Confidence 6999999999999988887766665543
No 47
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=66.05 E-value=6.4 Score=45.06 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=23.8
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009783 372 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 404 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 404 (526)
++||+|+.||+|.++.+.+.-...+...|.++|
T Consensus 62 l~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g 94 (878)
T 2v0c_A 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFG 94 (878)
T ss_dssp HHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTT
T ss_pred HHHHHHhcCCceEeecccCcccHHHHHHHHHcC
Confidence 899999999999998764322334555666655
No 48
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=65.42 E-value=1.9 Score=34.59 Aligned_cols=40 Identities=23% Similarity=0.418 Sum_probs=25.2
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 503 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 503 (526)
-+|..|+-.-....- +. ...||++. |+...+-|.||.||-
T Consensus 28 y~C~vCGyvYD~~~G---dp------~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 28 FRCIQCGFEYDEALG---WP------EDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp EEETTTCCEEETTTC---BT------TTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred EEeCCCCEEEcCCcC---Cc------ccCcCCCCChhHCCCCCcCCCCCC
Confidence 579999975421110 00 12466665 566677899999996
No 49
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=65.05 E-value=1.1e+02 Score=30.03 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=55.0
Q ss_pred hCCCCcEEEEEecHHhHHHHHhhcccCCCcc---CcC-----CCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHH
Q 009783 100 FVSPDILKLGFKFKQDLIYLSSTFCSQGCDI---GFD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKEL 171 (526)
Q Consensus 100 L~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~---~~~-----~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~ 171 (526)
+-++++..|.|....|+-.|.+.+--..+.+ .|. .-..++|+-.++.... ...-||.+|++.
T Consensus 146 vl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~---------~l~ggL~~lA~~- 215 (285)
T 4gmj_B 146 VLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCK---------NLKGGLQEVAEQ- 215 (285)
T ss_dssp SSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGST---------TCCSCHHHHHHH-
T ss_pred HhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhcc---------ccCChHHHHHHh-
Confidence 3467888999998899977654321001100 000 0134788433332211 124589999886
Q ss_pred cCCc-CcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009783 172 LDIS-LSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (526)
Q Consensus 172 Lg~~-L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~ 218 (526)
||++ +.+.+| |..|++.+..++-+|++.+-+
T Consensus 216 L~v~r~g~~Hq----------------AGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 216 LELERIGPQHQ----------------AGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp TTCCCCSCTTS----------------HHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCc----------------chhHHHHHHHHHHHHHHHHhc
Confidence 4543 222222 889999999999999887754
No 50
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=64.56 E-value=2.6 Score=33.94 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=13.1
Q ss_pred CceeecCCCCeEEecc
Q 009783 493 LQFWQCMDCNQLYWEV 508 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~G 508 (526)
..-|.|+.||+.|=-|
T Consensus 43 tGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 43 TGIWQCSYCDYKFTGG 58 (83)
T ss_dssp TTEEEETTTCCEEECC
T ss_pred CCeEECCCCCCEecCC
Confidence 3489999999998555
No 51
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=64.00 E-value=2.9 Score=30.59 Aligned_cols=39 Identities=18% Similarity=0.408 Sum_probs=24.1
Q ss_pred cccCCCcccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009783 456 RCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 503 (526)
Q Consensus 456 RC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 503 (526)
+|..|+-.-....-+.+ ..||++. |+..-+-|.||.||-
T Consensus 4 ~C~~CGyvYd~~~Gdp~---------~gi~pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 4 SCKICGYIYDEDEGDPD---------NGISPGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp EESSSSCEEETTTCBGG---------GTBCTTCCGGGSCTTCBCTTTCC
T ss_pred EeCCCCeEECCCcCCcc---------cCcCCCCCHhHCCCCCcCCCCCC
Confidence 69999975421110101 2355554 566678899999996
No 52
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=63.05 E-value=2.9 Score=32.58 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=25.1
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 503 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 503 (526)
-+|..|+-.-....-+. ...||++. |+...+=|.||.||-
T Consensus 8 y~C~vCGyiYd~~~Gdp---------~~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 8 YECEACGYIYEPEKGDK---------FAGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp EEETTTCCEECTTTCCT---------TTTCCSSCCGGGSCTTCBCTTTCC
T ss_pred EEeCCCCEEEcCCCCCc---------ccCcCCCCchhhCCCCCcCCCCCC
Confidence 57999997542111010 12456655 566677899999996
No 53
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=62.64 E-value=10 Score=34.75 Aligned_cols=32 Identities=13% Similarity=-0.098 Sum_probs=22.7
Q ss_pred hHHHHHHhhCCCC----cEEEEEecHHhHHHHHhhc
Q 009783 92 IWELLKELFVSPD----ILKLGFKFKQDLIYLSSTF 123 (526)
Q Consensus 92 ~~~~L~~lL~~~~----i~KVgh~~k~Dl~~L~~~~ 123 (526)
++..|..++.+.- ...||||+.+|+..|.+.+
T Consensus 88 v~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~ 123 (194)
T 2gbz_A 88 AEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQM 123 (194)
T ss_dssp HHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHH
Confidence 4455666776532 2359999999999998754
No 54
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=61.20 E-value=2.6 Score=31.18 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=24.5
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 503 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 503 (526)
-+|..|+-.-....-+. ...||++. |+..-+=|.||.||-
T Consensus 4 y~C~~CGyvYd~~~Gdp---------~~gi~pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLP---------EEGIPAGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp EEETTTCCEEETTTCBT---------TTTBCTTCCGGGSCTTCCCTTTCC
T ss_pred EEeCCCCeEECCCcCCc---------ccCcCCCCChhHCCCCCcCCCCCC
Confidence 37999997542110000 12455555 566677899999996
No 55
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=60.71 E-value=2.7 Score=34.17 Aligned_cols=40 Identities=18% Similarity=0.387 Sum_probs=25.1
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 503 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 503 (526)
-+|..|+-.-....-+.+ ..||++. |+..-+-|.||.||-
T Consensus 36 y~C~vCGyvYD~~~Gdp~---------~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 36 WICITCGHIYDEALGDEA---------EGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp EEETTTTEEEETTSCCTT---------TTCCSCCCGGGCCTTCCCSSSCC
T ss_pred EECCCCCeEecCCcCCcc---------cCcCCCCChhHCCCCCCCCCCCC
Confidence 589999975421111101 2455555 566677899999995
No 56
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=60.04 E-value=4.5 Score=46.36 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=22.6
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009783 372 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 404 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 404 (526)
|+|++|+.||+|.++.+.+.-...+...|.++|
T Consensus 82 laRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g 114 (880)
T 4arc_A 82 IARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNN 114 (880)
T ss_dssp HHHHHHHTTCEEECCCEECCCSTHHHHHHHHTT
T ss_pred HHHHHHHcCCceEEecCccccCcHHHHHHHHcC
Confidence 799999999999998753322224555555554
No 57
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=60.00 E-value=4.2 Score=27.24 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=11.8
Q ss_pred CCceeecCCCCeEE
Q 009783 492 NLQFWQCMDCNQLY 505 (526)
Q Consensus 492 ~~~F~~C~~Cgkvy 505 (526)
..+||+|+.||.|.
T Consensus 3 ~~~fY~C~~CGniv 16 (36)
T 1dxg_A 3 EGDVYKCELCGQVV 16 (36)
T ss_dssp TTCEEECTTTCCEE
T ss_pred cccEEEcCCCCcEE
Confidence 36799999999875
No 58
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=58.49 E-value=13 Score=31.77 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCccccccccCccccCCCccccc
Q 009783 434 NQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQ 466 (526)
Q Consensus 434 ~~QL~~vl~~f~l~~~~~~~~sRC~~CN~~l~~ 466 (526)
..++..|.....+.+.++.--+-|-.|+..|++
T Consensus 45 ~~~~~~is~k~~irlp~~~KR~~Ck~C~s~LiP 77 (120)
T 1x0t_A 45 VELALEIQKKAKVKIPRKWKRRYCKRCHTFLIP 77 (120)
T ss_dssp HHHHHHHHHHHTCCCCTTTTTSBCTTTCCBCCB
T ss_pred HHHHHHHHHHhccCCCHHHHHHhccCCCCEeEC
Confidence 467788888888888887667889999999974
No 59
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=56.99 E-value=15 Score=31.59 Aligned_cols=60 Identities=17% Similarity=0.354 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCccccccccCccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009783 434 NQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 505 (526)
Q Consensus 434 ~~QL~~vl~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 505 (526)
..++..|.+...+.+.++.--+-|-.|++.|++- ++.. -+|-.. ....-.+.|-.||.+.
T Consensus 40 ~~~~~~Is~K~~irlp~~~KR~~Ck~C~s~LIPG-~t~~---------vri~~~--~k~~vv~tCl~Cg~~k 99 (123)
T 2k3r_A 40 VELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPG-INAR---------VRLRQK--RMPHIVVKCLECGHIM 99 (123)
T ss_dssp HHHHHHHHHHHTCCCSSTTTTSBCTTTCCBCCBT-TTEE---------EEEECS--SSCEEEEEETTTTEEE
T ss_pred HHHHHHHHHHhccCCCHHHHHHhccCCCCEeECC-CceE---------EEEecC--CccEEEEECCCCCCEE
Confidence 4677888888888888876678899999999741 1100 011110 0113578899999764
No 60
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=54.12 E-value=5.7 Score=42.07 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=27.4
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCCc
Q 009783 372 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 405 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~R 405 (526)
|+||||..||+|.++.+.+.-+..|+..|+++|.
T Consensus 53 l~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~ 86 (462)
T 3tqo_A 53 VVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKE 86 (462)
T ss_dssp HHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTS
T ss_pred HHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCC
Confidence 7999999999999987644334679999988874
No 61
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=52.18 E-value=9.4 Score=28.37 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=10.7
Q ss_pred CceeecCCCCeEE
Q 009783 493 LQFWQCMDCNQLY 505 (526)
Q Consensus 493 ~~F~~C~~Cgkvy 505 (526)
..-+.|..||-||
T Consensus 28 ~ge~vC~~CGlVl 40 (58)
T 1dl6_A 28 AGDMICPECGLVV 40 (58)
T ss_dssp SCCEECTTTCCEE
T ss_pred CCeEEeCCCCCEE
Confidence 3458899999987
No 62
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=51.55 E-value=6 Score=33.73 Aligned_cols=15 Identities=27% Similarity=0.703 Sum_probs=13.1
Q ss_pred ceeecCCCCeEEecc
Q 009783 494 QFWQCMDCNQLYWEV 508 (526)
Q Consensus 494 ~F~~C~~CgkvyW~G 508 (526)
.-|.|+.|+++|=-|
T Consensus 77 GIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 77 GIWQCSYCDYKFTGG 91 (116)
T ss_dssp TEEEETTTCCEEECC
T ss_pred eeEECCCCCCEEECC
Confidence 489999999998666
No 63
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=48.86 E-value=7.4 Score=29.30 Aligned_cols=10 Identities=20% Similarity=0.826 Sum_probs=8.5
Q ss_pred CccccCCCcc
Q 009783 454 MSRCTKCNGR 463 (526)
Q Consensus 454 ~sRC~~CN~~ 463 (526)
++.|+.|+..
T Consensus 30 l~~c~~cGe~ 39 (60)
T 3v2d_5 30 LVPCPECKAM 39 (60)
T ss_dssp CEECTTTCCE
T ss_pred eeECCCCCCe
Confidence 7889999884
No 64
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=47.93 E-value=16 Score=32.29 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=32.4
Q ss_pred ChHHHHHhhhcCCcEEEecChhHHHhhcccCCcEEEEcC
Q 009783 392 EPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKS 430 (526)
Q Consensus 392 ~d~~ll~~A~~E~RiiLTrd~~l~~~~~~~~~~~~~v~~ 430 (526)
-|..++++|++.+.+++|.|..+.+.+...+..++.++.
T Consensus 94 vD~~l~~lA~~~~a~lvTnD~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 94 IDAMIRKVAKETNSILLTSDWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp HHHHHHHHHHHTTCEEEESCHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHHHHHhCCEEEcCCHHHHHHHHHcCCEEEEecc
Confidence 367899999999999999999998877666667777765
No 65
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=47.08 E-value=6.6 Score=22.66 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=14.0
Q ss_pred eeecCCCCeEEecccchhh
Q 009783 495 FWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 495 F~~C~~CgkvyW~GsH~~r 513 (526)
-+.|+.||+.|-.-++..+
T Consensus 3 ~~~C~~C~k~f~~~~~l~~ 21 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTK 21 (27)
T ss_dssp CEECSSSSCEESSHHHHHH
T ss_pred CccCCCcChhhCCHHHHHH
Confidence 3689999999976555443
No 66
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=46.84 E-value=8.1 Score=22.45 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=14.2
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTL 20 (29)
T ss_dssp EECSSSSCEESCSHHHHH
T ss_pred ccCCCCCchhCCHHHHHH
Confidence 579999999977666554
No 67
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=46.71 E-value=8 Score=22.47 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=13.9
Q ss_pred eeecCCCCeEEecccchhh
Q 009783 495 FWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 495 F~~C~~CgkvyW~GsH~~r 513 (526)
-+.|+.||+.|-.-++..+
T Consensus 3 ~~~C~~C~~~f~~~~~l~~ 21 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMR 21 (30)
T ss_dssp CEECTTTCCEESCHHHHHH
T ss_pred CccCCCCCcccCCHHHHHH
Confidence 3689999999976555443
No 68
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=52.30 E-value=4.2 Score=23.37 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=13.9
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLAN 20 (26)
Confidence 579999999987666543
No 69
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=45.84 E-value=12 Score=31.05 Aligned_cols=46 Identities=22% Similarity=0.492 Sum_probs=26.7
Q ss_pred HHHHHHc-CccccccccCccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCe
Q 009783 438 LEVIEAF-QLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQ 503 (526)
Q Consensus 438 ~~vl~~f-~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgk 503 (526)
.+|+..+ .++-.......+|+.||..- |....+....+|.|-+||+
T Consensus 20 ~~v~~~~~~lk~~G~~~~~~CPfh~e~~--------------------pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 20 VDVIGEYVQLKRQGRNYFGLCPFHGEKT--------------------PSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp HHHHTTTSCCEEETTEEEECCSSSCCSS--------------------CCEEEETTTTEEEETTTCC
T ss_pred HHHHHHhCCeeecCCeEEEECCCCCCCC--------------------CcEEEEcCCCEEEECCCCC
Confidence 3555544 33333334456899988631 2222233467999999995
No 70
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=45.81 E-value=8.4 Score=40.66 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCCc
Q 009783 372 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 405 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~R 405 (526)
|+|+||..||+|.++.+.+.-|..++..|+++|.
T Consensus 50 l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~ 83 (461)
T 1li5_A 50 VARYLRFLGYKLKYVRNITDIDDKIIKRANENGE 83 (461)
T ss_dssp HHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCC
Confidence 8999999999999885533234678888988874
No 71
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=45.65 E-value=8 Score=29.09 Aligned_cols=11 Identities=27% Similarity=1.114 Sum_probs=8.7
Q ss_pred cCccccCCCcc
Q 009783 453 LMSRCTKCNGR 463 (526)
Q Consensus 453 ~~sRC~~CN~~ 463 (526)
.++.|+.|+..
T Consensus 29 ~l~~c~~cG~~ 39 (60)
T 2zjr_Z 29 NLTECPQCHGK 39 (60)
T ss_dssp CCEECTTTCCE
T ss_pred CceECCCCCCE
Confidence 36889999885
No 72
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=45.34 E-value=13 Score=32.41 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=30.6
Q ss_pred CCChHHHHHhhhcCCcEEEecChhHHHhhcccCCcEEEEcCC
Q 009783 390 KPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSL 431 (526)
Q Consensus 390 ~~~d~~ll~~A~~E~RiiLTrd~~l~~~~~~~~~~~~~v~~~ 431 (526)
++ |.-+++.|.+.+.+|+|.|+.|.++....+..++.+..+
T Consensus 98 ~~-D~~Ila~A~~~~~~LvT~D~~l~~~a~~~Gv~vi~~~~~ 138 (147)
T 1o4w_A 98 EG-DPSLIEAAEKYGCILITNDKELKRKAKQRGIPVGYLKED 138 (147)
T ss_dssp CS-HHHHHHHHHHHTCEEECCCHHHHHHHHHTTCCEECCCCC
T ss_pred Cc-hHHHHHHHHHhCCEEEECCHHHHHHHHHCCCeEEEecCC
Confidence 35 788999999999999999999877654445556555543
No 73
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=45.23 E-value=8.5 Score=35.20 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=20.2
Q ss_pred CccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeE
Q 009783 454 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQL 504 (526)
Q Consensus 454 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkv 504 (526)
..-|+.||..++. ....-|+|++|++.
T Consensus 42 Y~ACp~CnKKV~~------------------------~~~g~~~CekC~~~ 68 (172)
T 3u50_C 42 YYRCTCQGKSVLK------------------------YHGDSFFCESCQQF 68 (172)
T ss_dssp EEECTTSCCCEEE------------------------ETTTEEEETTTTEE
T ss_pred ehhchhhCCEeee------------------------CCCCeEECCCCCCC
Confidence 5679999996531 12458999999998
No 74
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=45.11 E-value=8.9 Score=22.10 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=13.4
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKR 20 (29)
T ss_dssp EECTTTSCEESCHHHHHH
T ss_pred ccCCCCCCccCChhHHHH
Confidence 579999999976555443
No 75
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=43.28 E-value=7.8 Score=22.52 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=13.3
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.||+.|-.-++..+
T Consensus 4 ~~C~~C~k~f~~~~~l~~ 21 (27)
T 2kvg_A 4 YRCPLCRAGCPSLASMQA 21 (27)
T ss_dssp EEETTTTEEESCHHHHHH
T ss_pred cCCCCCCcccCCHHHHHH
Confidence 679999999976555443
No 76
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=43.21 E-value=8.2 Score=22.33 Aligned_cols=18 Identities=11% Similarity=0.264 Sum_probs=13.5
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.||+.|-.-++..+
T Consensus 4 ~~C~~C~k~f~~~~~l~~ 21 (28)
T 2kvf_A 4 YSCSVCGKRFSLKHQMET 21 (28)
T ss_dssp EECSSSCCEESCHHHHHH
T ss_pred ccCCCCCcccCCHHHHHH
Confidence 679999999976555443
No 77
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=42.56 E-value=8.9 Score=27.27 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=11.4
Q ss_pred ceeecCCCCeEEec
Q 009783 494 QFWQCMDCNQLYWE 507 (526)
Q Consensus 494 ~F~~C~~CgkvyW~ 507 (526)
.-|+|+.||-||=+
T Consensus 3 ~~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 3 QKYVCNVCGYEYDP 16 (46)
T ss_dssp CCEEETTTCCEECG
T ss_pred CEEECCCCCeEEeC
Confidence 45899999999953
No 78
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=42.14 E-value=17 Score=31.71 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=30.2
Q ss_pred ChHHHHHhhhcCCcEEEecChhHHHhhcccCCcEEEE
Q 009783 392 EPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRV 428 (526)
Q Consensus 392 ~d~~ll~~A~~E~RiiLTrd~~l~~~~~~~~~~~~~v 428 (526)
-|..+++.|++-+.+++|.|..+.+.+...+..++.+
T Consensus 86 vD~~ll~lA~~~~~~lvTnD~~L~kvA~~~GI~Vl~l 122 (134)
T 3ix7_A 86 VDEKLLFLARDLEAALVTNDHALLQMARIYGVKALSI 122 (134)
T ss_dssp HHHHHHHHHHHTTCEEEESCHHHHHHHHHTTCCEEEH
T ss_pred HHHHHHHHHHHhCCEEEeCCHHHHHHHHHCCCeEEeh
Confidence 3678999999999999999999987766556566655
No 79
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=42.10 E-value=7.7 Score=22.35 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=14.3
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.||+.|-..++..+
T Consensus 3 ~~C~~C~~~f~~~~~l~~ 20 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLKA 20 (29)
T ss_dssp CCCSSCCCCCCTTTHHHH
T ss_pred CcCCCCCcccCCHHHHHH
Confidence 579999999977776554
No 80
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=41.35 E-value=8.1 Score=40.08 Aligned_cols=33 Identities=6% Similarity=0.077 Sum_probs=26.3
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009783 372 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 404 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 404 (526)
|+|+||..||+|.++.+.+.-+..++..|+++|
T Consensus 67 laR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g 99 (414)
T 3c8z_A 67 VHRLWLDAGHTVQYVQNVTDVDDPLFERAERDG 99 (414)
T ss_dssp HHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcC
Confidence 899999999999988654333457888888876
No 81
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=41.07 E-value=6.1 Score=22.97 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=13.9
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~~~f~~~~~l~~ 20 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKR 20 (29)
T ss_dssp CBCTTTCCBCSSHHHHHH
T ss_pred eECCCCCcccCCHHHHHH
Confidence 579999999977665544
No 82
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=41.01 E-value=13 Score=32.30 Aligned_cols=28 Identities=18% Similarity=0.785 Sum_probs=20.1
Q ss_pred CccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009783 454 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 505 (526)
Q Consensus 454 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 505 (526)
+.-|+.||++. +|+ ....|.||.|+.-+
T Consensus 27 lP~CP~C~sey-----------------------tYe-Dg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEY-----------------------TYE-DGALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCC-----------------------CEE-CSSSEEETTTTEEE
T ss_pred CCCCCCCCCcc-----------------------eEe-cCCeEECCcccccc
Confidence 46799999964 233 24579999999763
No 83
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=40.55 E-value=13 Score=28.93 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=9.4
Q ss_pred CceeecCCCCeEE
Q 009783 493 LQFWQCMDCNQLY 505 (526)
Q Consensus 493 ~~F~~C~~Cgkvy 505 (526)
.+-.+|| ||+..
T Consensus 19 ~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 19 AKTRKCV-CGRTV 30 (71)
T ss_dssp CSEEEET-TTEEE
T ss_pred CcEEECC-CCCee
Confidence 4567899 99875
No 84
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=39.61 E-value=6.7 Score=22.45 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=13.2
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.|||.|-.-++..+
T Consensus 2 ~~C~~C~k~f~~~~~l~~ 19 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSR 19 (27)
T ss_dssp CBCSSSCCBCSSHHHHHH
T ss_pred ccCCCCCCcCCCHHHHHH
Confidence 579999999976555443
No 85
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=38.97 E-value=12 Score=34.07 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=12.7
Q ss_pred CceeecCCCCeEEe
Q 009783 493 LQFWQCMDCNQLYW 506 (526)
Q Consensus 493 ~~F~~C~~CgkvyW 506 (526)
..+|+|+.||-||-
T Consensus 136 ~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 136 KKVYICPICGYTAV 149 (170)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCeeEeCCCCCeeC
Confidence 46999999999997
No 86
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=38.48 E-value=5.5 Score=36.53 Aligned_cols=15 Identities=20% Similarity=0.665 Sum_probs=12.2
Q ss_pred cccCccccCCCcccc
Q 009783 451 DQLMSRCTKCNGRFI 465 (526)
Q Consensus 451 ~~~~sRC~~CN~~l~ 465 (526)
-.++++|+.|+.+++
T Consensus 137 Gvv~a~~~~~g~~m~ 151 (179)
T 3m7n_A 137 GVLRALCSNCKTEMV 151 (179)
T ss_dssp EEEECBCTTTCCBCE
T ss_pred CEEEecccccCCceE
Confidence 346899999999885
No 87
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=38.26 E-value=7.8 Score=22.52 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=14.1
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (30)
T 1klr_A 3 YQCQYCEFRSADSSNLKT 20 (30)
T ss_dssp CCCSSSSCCCSCSHHHHH
T ss_pred ccCCCCCCccCCHHHHHH
Confidence 579999999977666554
No 88
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.18 E-value=12 Score=23.16 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=15.7
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2els_A 7 GKIFTCEYCNKVFKFKHSLQA 27 (36)
T ss_dssp CCCEECTTTCCEESSHHHHHH
T ss_pred CCCEECCCCCceeCCHHHHHH
Confidence 345789999999977665544
No 89
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.45 E-value=15 Score=29.41 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=13.7
Q ss_pred CceeecCCCCeEEeccc
Q 009783 493 LQFWQCMDCNQLYWEVM 509 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~Gs 509 (526)
.-.|.|.+||+.|=-|.
T Consensus 51 ~GIW~C~kCg~~~AGGA 67 (83)
T 3j21_i 51 TGIWQCQKCGATFAGGA 67 (83)
T ss_dssp TTEEEETTTCCEEECCS
T ss_pred cCeEEcCCCCCEEeCCc
Confidence 45899999999986654
No 90
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=36.98 E-value=17 Score=29.72 Aligned_cols=18 Identities=22% Similarity=0.604 Sum_probs=14.4
Q ss_pred CceeecCCCCeEEecccc
Q 009783 493 LQFWQCMDCNQLYWEVMS 510 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH 510 (526)
.-.|.|.+||+.|=.|.-
T Consensus 52 ~GIW~C~~Cg~~~AGGAy 69 (92)
T 3iz5_m 52 VGIWGCKDCGKVKAGGAY 69 (92)
T ss_dssp TTEEECSSSCCEEECCSS
T ss_pred cceEEcCCCCCEEeCCcc
Confidence 458999999999876653
No 91
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=35.50 E-value=16 Score=28.47 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=13.3
Q ss_pred CceeecCCCCeEEeccc
Q 009783 493 LQFWQCMDCNQLYWEVM 509 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~Gs 509 (526)
.-.|.|.+|++.|=-|.
T Consensus 42 ~GIW~C~~C~~~~AGGA 58 (72)
T 3jyw_9 42 AGIWTCSCCKKTVAGGA 58 (72)
T ss_dssp SSCBCCSSSCCCCCCSS
T ss_pred CCeEECCCCCCEEeCCc
Confidence 45899999999875553
No 92
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=35.50 E-value=18 Score=29.51 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=14.4
Q ss_pred CceeecCCCCeEEecccc
Q 009783 493 LQFWQCMDCNQLYWEVMS 510 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH 510 (526)
.-.|.|.+|++.|=.|.-
T Consensus 52 ~GIW~C~~C~~~~AGGAy 69 (92)
T 3izc_m 52 AGIWTCSCCKKTVAGGAY 69 (92)
T ss_dssp TTEEECTTTCCEEECCSS
T ss_pred cceEEcCCCCCEEeCCcc
Confidence 358999999999876643
No 93
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=35.21 E-value=16 Score=30.46 Aligned_cols=18 Identities=17% Similarity=0.576 Sum_probs=14.6
Q ss_pred CceeecCCCCeEEecccc
Q 009783 493 LQFWQCMDCNQLYWEVMS 510 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH 510 (526)
.-.|.|.+||+.|=.|.-
T Consensus 52 ~GIW~C~kCg~~~AGGAy 69 (103)
T 4a17_Y 52 VGIWKCKPCKKIIAGGAW 69 (103)
T ss_dssp TTEEEETTTTEEEECCSS
T ss_pred cceEEcCCCCCEEeCCcc
Confidence 458999999999876653
No 94
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=34.94 E-value=9 Score=40.94 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=15.8
Q ss_pred HHHHHHhcCCceecCCCC-CC---------ChHHHHHhhhcCCc
Q 009783 372 LAKHLRCVGIDAATPRSK-KP---------EPRELIDQTSKEKR 405 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~-~~---------~d~~ll~~A~~E~R 405 (526)
|+||||..||+|.++.+. ++ -+..|+..|+++|.
T Consensus 70 l~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~ 113 (501)
T 3sp1_A 70 LIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGL 113 (501)
T ss_dssp HHHHHHHHTCCEEEEEEEBCSCCC-------------------C
T ss_pred HHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCC
Confidence 799999999999987421 11 14568888888774
No 95
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=34.86 E-value=18 Score=26.67 Aligned_cols=11 Identities=18% Similarity=0.609 Sum_probs=9.4
Q ss_pred ccccCCCcccc
Q 009783 455 SRCTKCNGRFI 465 (526)
Q Consensus 455 sRC~~CN~~l~ 465 (526)
-+|+.|.++|.
T Consensus 11 L~CP~c~~~L~ 21 (56)
T 2kpi_A 11 LACPACHAPLE 21 (56)
T ss_dssp CCCSSSCSCEE
T ss_pred eeCCCCCCcce
Confidence 48999999874
No 96
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=34.81 E-value=18 Score=25.19 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=11.4
Q ss_pred cCCceeecCCCCeE
Q 009783 491 KNLQFWQCMDCNQL 504 (526)
Q Consensus 491 ~~~~F~~C~~Cgkv 504 (526)
....|..|.+|||-
T Consensus 13 ~~~~YRvC~~CgkP 26 (44)
T 2lo3_A 13 KPIQYRVCEKCGKP 26 (44)
T ss_dssp CCCCEEECTTTCCE
T ss_pred ccccchhhcccCCc
Confidence 44679999999984
No 97
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.33 E-value=18 Score=22.29 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=15.4
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.|++.|=.-++..+
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elq_A 7 GKPFKCSLCEYATRSKSNLKA 27 (36)
T ss_dssp CCSEECSSSSCEESCHHHHHH
T ss_pred CCCccCCCCCchhCCHHHHHH
Confidence 345789999999976555444
No 98
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.13 E-value=15 Score=22.32 Aligned_cols=20 Identities=10% Similarity=0.188 Sum_probs=15.2
Q ss_pred ceeecCCCCeEEecccchhh
Q 009783 494 QFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 494 ~F~~C~~CgkvyW~GsH~~r 513 (526)
.-+.|+.||+.|-.-++..+
T Consensus 6 k~~~C~~C~k~f~~~~~L~~ 25 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIRLRS 25 (35)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCcchhCCHHHHHH
Confidence 45789999999987665544
No 99
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=34.10 E-value=19 Score=32.82 Aligned_cols=13 Identities=15% Similarity=0.759 Sum_probs=10.9
Q ss_pred CceeecCCCCeEE
Q 009783 493 LQFWQCMDCNQLY 505 (526)
Q Consensus 493 ~~F~~C~~Cgkvy 505 (526)
..-|+|++|++.|
T Consensus 60 ~g~~~CekC~~~~ 72 (181)
T 1l1o_C 60 NGLYRCEKCDTEF 72 (181)
T ss_dssp TTEEEETTTTEEE
T ss_pred CCeEECCCCCCcC
Confidence 3479999999986
No 100
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=34.10 E-value=23 Score=32.99 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCccccccccCccccCCCcc
Q 009783 434 NQQLLEVIEAFQLKISEDQLMSRCTKCNGR 463 (526)
Q Consensus 434 ~~QL~~vl~~f~l~~~~~~~~sRC~~CN~~ 463 (526)
.+.+..+++.+... .+...-+|..|+-.
T Consensus 153 ~~~~~~ll~~l~~~--~~~~~~~C~~CG~i 180 (202)
T 1yuz_A 153 AERYLAAYNDIDAP--DDDKFHLCPICGYI 180 (202)
T ss_dssp HHHHHHHHHTTTCC--CSCCEEECSSSCCE
T ss_pred HHHHHHHHHHHhcC--CCCcEEEECCCCCE
Confidence 46677777766443 23346789999985
No 101
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.95 E-value=22 Score=22.28 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=14.8
Q ss_pred CceeecCCCCeEEecccchh
Q 009783 493 LQFWQCMDCNQLYWEVMSAY 512 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~ 512 (526)
+.-+.|+.||+.|=.-++..
T Consensus 7 ~k~~~C~~C~k~f~~~~~L~ 26 (37)
T 2elm_A 7 GHLYYCSQCHYSSITKNCLK 26 (37)
T ss_dssp SCEEECSSSSCEEECHHHHH
T ss_pred CcCeECCCCCcccCCHHHHH
Confidence 34688999999997655544
No 102
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=33.51 E-value=11 Score=22.00 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=12.3
Q ss_pred eecCCCCeEEecccchh
Q 009783 496 WQCMDCNQLYWEVMSAY 512 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~ 512 (526)
+.|+.||+.|=.-++..
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (30)
T 1paa_A 3 YACGLCNRAFTRRDLLI 19 (30)
T ss_dssp SBCTTTCCBCSSSHHHH
T ss_pred cCCcccCcccCChHHHH
Confidence 57999999986554443
No 103
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=33.50 E-value=11 Score=23.50 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=14.4
Q ss_pred ceeecCCCCeEEecccchhh
Q 009783 494 QFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 494 ~F~~C~~CgkvyW~GsH~~r 513 (526)
.-+.|+.||+.|=.-++..+
T Consensus 10 k~~~C~~C~k~f~~~~~l~~ 29 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDHLAL 29 (37)
T ss_dssp SSBCCTTTCCCBSSHHHHHH
T ss_pred CCccCCCCCcccCcHHHHHH
Confidence 45789999999866555443
No 104
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=33.44 E-value=14 Score=35.50 Aligned_cols=26 Identities=23% Similarity=0.682 Sum_probs=13.5
Q ss_pred cccCccccccCCceeecCCCCeEEecc
Q 009783 482 QRIPDCLFDKNLQFWQCMDCNQLYWEV 508 (526)
Q Consensus 482 ~~vp~~v~~~~~~F~~C~~CgkvyW~G 508 (526)
+.|++.-|+. ..||.|..|++.|+.-
T Consensus 18 ~~~~~~~~~~-~d~~~Ce~C~~~~~~~ 43 (237)
T 3ray_A 18 DLIVPKSFQQ-VDFWFCESCQEYFVDE 43 (237)
T ss_dssp ------------CCEEETTTTEEESSS
T ss_pred cccCCCCCCC-CCEEEchHhCcccccc
Confidence 3566776764 6799999999999864
No 105
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=32.60 E-value=15 Score=22.53 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=15.0
Q ss_pred ceeecCCCCeEEecccchhh
Q 009783 494 QFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 494 ~F~~C~~CgkvyW~GsH~~r 513 (526)
.-+.|+.||+.|-.-++..+
T Consensus 6 k~~~C~~C~k~f~~~~~l~~ 25 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCAR 25 (35)
T ss_dssp SCEECSSSCCEESSHHHHHH
T ss_pred cCeeCCCCCcccCCHHHHHH
Confidence 35789999999976655544
No 106
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=32.47 E-value=12 Score=29.90 Aligned_cols=13 Identities=15% Similarity=0.784 Sum_probs=10.2
Q ss_pred eeecCCCCeEEec
Q 009783 495 FWQCMDCNQLYWE 507 (526)
Q Consensus 495 F~~C~~CgkvyW~ 507 (526)
...||.||--|..
T Consensus 51 ~FkCP~CgEEFyG 63 (95)
T 2k5c_A 51 VFKCPVCGEEFYG 63 (95)
T ss_dssp EEECTTTCCEEET
T ss_pred hhcCCCccHHHhc
Confidence 3579999998863
No 107
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.26 E-value=17 Score=22.30 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=15.5
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elt_A 7 GKPYKCPQCSYASAIKANLNV 27 (36)
T ss_dssp CCSEECSSSSCEESSHHHHHH
T ss_pred CCCCCCCCCCcccCCHHHHHH
Confidence 345789999999977665544
No 108
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=38.44 E-value=9.6 Score=22.23 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=12.8
Q ss_pred eecCCCCeEEecccchh
Q 009783 496 WQCMDCNQLYWEVMSAY 512 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~ 512 (526)
+.|+.||+.|-.-++..
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSLI 19 (29)
Confidence 57999999997655543
No 109
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=38.04 E-value=9.8 Score=22.19 Aligned_cols=18 Identities=11% Similarity=0.445 Sum_probs=13.6
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.||+.|-.-++..+
T Consensus 4 ~~C~~C~k~f~~~~~l~~ 21 (30)
T 2lvr_A 4 YVCIHCQRQFADPGALQR 21 (30)
Confidence 579999999976655443
No 110
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=31.07 E-value=17 Score=29.40 Aligned_cols=15 Identities=33% Similarity=0.966 Sum_probs=12.8
Q ss_pred CceeecCCCCeEEec
Q 009783 493 LQFWQCMDCNQLYWE 507 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~ 507 (526)
..-|+|+.||-||=+
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 568999999999954
No 111
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=30.90 E-value=26 Score=30.79 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=32.5
Q ss_pred cHHHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecChhHHHhh
Q 009783 369 VEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQ 418 (526)
Q Consensus 369 Lg~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~RiiLTrd~~l~~~~ 418 (526)
-+.|...||..|.-. +..|.-|...|...|-.|+|+|++|.+-.
T Consensus 97 a~~l~~~l~~~G~~~------~~~D~lIaA~A~~~~~~LvT~d~dF~~i~ 140 (150)
T 3dbo_B 97 WARLRIHLAESGRRV------RINDLWIAAVAASRALPVITQDDDFAALD 140 (150)
T ss_dssp HHHHHHHHHHHTCCC------BHHHHHHHHHHHHTTCCEEESSSSGGGGT
T ss_pred HHHHHHHHHHcCCCC------CCchHHHHHHHHHCCCEEEECChhhhhCC
Confidence 345777788888631 23467788999999999999998785543
No 112
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=30.48 E-value=19 Score=28.70 Aligned_cols=13 Identities=23% Similarity=0.810 Sum_probs=11.0
Q ss_pred CceeecCCCCeEE
Q 009783 493 LQFWQCMDCNQLY 505 (526)
Q Consensus 493 ~~F~~C~~Cgkvy 505 (526)
..-.+|+.||++|
T Consensus 54 g~~~RC~eCG~~f 66 (80)
T 2odx_A 54 NEVARCWECGSVY 66 (80)
T ss_dssp TCEEECSSSCCEE
T ss_pred CCCeECCCCCeEE
Confidence 3678999999988
No 113
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=30.45 E-value=17 Score=28.98 Aligned_cols=14 Identities=21% Similarity=0.776 Sum_probs=12.2
Q ss_pred CceeecCCCCeEEe
Q 009783 493 LQFWQCMDCNQLYW 506 (526)
Q Consensus 493 ~~F~~C~~CgkvyW 506 (526)
..-|+|+.||-||=
T Consensus 25 m~~y~C~vCGyvYD 38 (81)
T 2kn9_A 25 YKLFRCIQCGFEYD 38 (81)
T ss_dssp CCEEEETTTCCEEE
T ss_pred cceEEeCCCCEEEc
Confidence 45899999999995
No 114
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.43 E-value=15 Score=22.86 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=15.7
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-..++..+
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~ 27 (37)
T 2elo_A 7 GRSYSCPVCEKSFSEDRLIKS 27 (37)
T ss_dssp CCCCEETTTTEECSSHHHHHH
T ss_pred CCCcCCCCCCCccCCHHHHHH
Confidence 345789999999977666554
No 115
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.30 E-value=24 Score=21.83 Aligned_cols=21 Identities=10% Similarity=0.157 Sum_probs=15.6
Q ss_pred CceeecCCCCeEEecc-cchhh
Q 009783 493 LQFWQCMDCNQLYWEV-MSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~G-sH~~r 513 (526)
..-+.|+.|++.|-.- ++..+
T Consensus 7 ~k~~~C~~C~k~f~~~~~~L~~ 28 (37)
T 2elp_A 7 GRAMKCPYCDFYFMKNGSDLQR 28 (37)
T ss_dssp CCCEECSSSSCEECSSCHHHHH
T ss_pred CCCeECCCCChhhccCHHHHHH
Confidence 3457899999999775 55544
No 116
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=30.24 E-value=28 Score=35.82 Aligned_cols=47 Identities=17% Similarity=0.465 Sum_probs=28.7
Q ss_pred HHHHHHHc-CccccccccCccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCe
Q 009783 437 LLEVIEAF-QLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQ 503 (526)
Q Consensus 437 L~~vl~~f-~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgk 503 (526)
+.+|+..+ .++........+|+.||..- |.........+|.|-+||+
T Consensus 16 I~dvi~~~v~lkk~G~~~~~~CPfh~ekt--------------------pSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 16 IVDVISEYLNLEKVGSNYRTNCPFHPDDT--------------------PSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp HHHHHHHHSCCEEETTEEEECCSSSCCSS--------------------CCEEEETTTTEEEETTTCC
T ss_pred HHHHHHHhcccccCCCeEEeeCcCCCCCC--------------------CeEEEECCCCEEEECCCCC
Confidence 34666654 55544445557899998631 2222223456999999995
No 117
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=30.17 E-value=48 Score=29.43 Aligned_cols=53 Identities=9% Similarity=0.329 Sum_probs=33.2
Q ss_pred EEEcCCCHHHHHHHHHHHcCccccccccCccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeE
Q 009783 426 YRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQL 504 (526)
Q Consensus 426 ~~v~~~~~~~QL~~vl~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkv 504 (526)
+.|+-.-...+|..+|+.| + +.|-.|+.|+.+-.. +.+ +...-|-.|..||..
T Consensus 82 lii~G~~~~~~i~~~L~~y-I-----~~yVlC~~C~sPdT~--L~k------------------~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 82 VVLQGRFTPYLIANKLKKY-I-----KEYVICPVCGSPDTK--IIK------------------RDRFHFLKCEACGAE 134 (148)
T ss_dssp EEESSCCCHHHHHHHHHHH-H-----HHHSSCSSSCCTTCC--CCB------------------SSSSBCCCCSSSCCC
T ss_pred EEEEeeeCHHHHHHHHHHH-H-----HHEEECCCCCCcCcE--EEE------------------eCCEEEEEecCCCCC
Confidence 4454444467888888887 1 124579999997531 211 123457889999864
No 118
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.82 E-value=17 Score=22.31 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=15.0
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 7 ~~~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elr_A 7 GKTHLCDMCGKKFKSKGTLKS 27 (36)
T ss_dssp CSSCBCTTTCCBCSSHHHHHH
T ss_pred CCCeecCcCCCCcCchHHHHH
Confidence 345789999999966555443
No 119
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=28.61 E-value=20 Score=29.60 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.8
Q ss_pred CceeecCCCCeEE
Q 009783 493 LQFWQCMDCNQLY 505 (526)
Q Consensus 493 ~~F~~C~~Cgkvy 505 (526)
.+-.+|+.||++|
T Consensus 77 g~~~RC~eCG~~f 89 (98)
T 1v54_F 77 GEAQRCPSCGTHY 89 (98)
T ss_dssp SSCEECTTTCCEE
T ss_pred CCceECCCCCeEE
Confidence 3477999999987
No 120
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.58 E-value=19 Score=26.18 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=8.1
Q ss_pred eeecCCCCeE
Q 009783 495 FWQCMDCNQL 504 (526)
Q Consensus 495 F~~C~~Cgkv 504 (526)
-|.|..||-.
T Consensus 28 aw~CrKCG~~ 37 (51)
T 3j21_g 28 AKKCRKCGYK 37 (51)
T ss_dssp CSSCSSSSSC
T ss_pred ceecCCCCCc
Confidence 6889999854
No 121
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.45 E-value=24 Score=21.71 Aligned_cols=20 Identities=10% Similarity=0.366 Sum_probs=14.8
Q ss_pred ceeecCCCCeEEecccchhh
Q 009783 494 QFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 494 ~F~~C~~CgkvyW~GsH~~r 513 (526)
.-+.|+.|++.|-.-++..+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elv_A 8 LLYDCHICERKFKNELDRDR 27 (36)
T ss_dssp CCEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 45789999999976555443
No 122
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=27.28 E-value=21 Score=38.12 Aligned_cols=32 Identities=6% Similarity=0.171 Sum_probs=24.2
Q ss_pred HHHHHHhcCCceecCCCCCCCh--HHHHHhhhcCCc
Q 009783 372 LAKHLRCVGIDAATPRSKKPEP--RELIDQTSKEKR 405 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~~~~d--~~ll~~A~~E~R 405 (526)
++||+|+.||+|.++.+ .|+ -.+...|.++|.
T Consensus 38 i~Ry~r~~G~~v~~v~G--~D~hG~~ie~~a~k~g~ 71 (542)
T 3u1f_A 38 IGRYHRVKGERVFALTG--TDEHGQKVAEAAKQKQV 71 (542)
T ss_dssp HHHHHHHTTCCEEEEEE--EECCSHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCccccCc--cCcChHHHHHHHHHcCC
Confidence 79999999999999864 232 257777777763
No 123
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=27.06 E-value=21 Score=32.86 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=11.8
Q ss_pred ceeecCCCCeEEecc
Q 009783 494 QFWQCMDCNQLYWEV 508 (526)
Q Consensus 494 ~F~~C~~CgkvyW~G 508 (526)
..|+|+.||-|| .|
T Consensus 154 ~~~~C~~CG~~~-~g 167 (191)
T 1lko_A 154 TKWRCRNCGYVH-EG 167 (191)
T ss_dssp EEEEETTTCCEE-EE
T ss_pred ceEEECCCCCEe-eC
Confidence 489999999997 45
No 124
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=26.94 E-value=20 Score=24.30 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=15.2
Q ss_pred ceeecCCCCeEEecccchhh
Q 009783 494 QFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 494 ~F~~C~~CgkvyW~GsH~~r 513 (526)
.-+.|..|||.|-.-++..+
T Consensus 6 kp~~C~~C~k~F~~~~~L~~ 25 (48)
T 3iuf_A 6 KPYACDICGKRYKNRPGLSY 25 (48)
T ss_dssp SCEECTTTCCEESSHHHHHH
T ss_pred cCEECCCcCcccCCHHHHHH
Confidence 35789999999977665544
No 125
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.85 E-value=21 Score=23.48 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yts_A 10 EKPYICNECGKSFIQKSHLNR 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCEECCCCChhhCChHHHHH
Confidence 345789999999987766555
No 126
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=26.82 E-value=21 Score=22.60 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=14.8
Q ss_pred ceeecCCCCeEEecccchhh
Q 009783 494 QFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 494 ~F~~C~~CgkvyW~GsH~~r 513 (526)
.-+.|+.||+.|-.-++..+
T Consensus 5 k~~~C~~C~k~f~~~~~L~~ 24 (39)
T 1njq_A 5 RSYTCSFCKREFRSAQALGG 24 (39)
T ss_dssp SSEECTTTCCEESSHHHHHH
T ss_pred CceECCCCCcccCCHHHHHH
Confidence 34789999999976655544
No 127
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.75 E-value=10 Score=23.13 Aligned_cols=15 Identities=13% Similarity=0.527 Sum_probs=11.2
Q ss_pred eecCCCCeEEecccc
Q 009783 496 WQCMDCNQLYWEVMS 510 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH 510 (526)
+.|+.|||.|-.-++
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (32)
T 2kfq_A 3 FACPACPKRFMRSDA 17 (32)
T ss_dssp SSSSSSCTTHHHHHT
T ss_pred CCCCCCCcccCCHHH
Confidence 569999998865444
No 128
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=26.75 E-value=24 Score=25.71 Aligned_cols=12 Identities=25% Similarity=0.905 Sum_probs=10.5
Q ss_pred CceeecCCCCeE
Q 009783 493 LQFWQCMDCNQL 504 (526)
Q Consensus 493 ~~F~~C~~Cgkv 504 (526)
..||.|+.||..
T Consensus 41 T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 41 TIFYKCTKCGHT 52 (57)
T ss_dssp EEEEEESSSCCE
T ss_pred cEEEEcCCCCCE
Confidence 469999999986
No 129
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=26.74 E-value=23 Score=29.08 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=13.4
Q ss_pred ccccCCceeecCCCCeE
Q 009783 488 LFDKNLQFWQCMDCNQL 504 (526)
Q Consensus 488 v~~~~~~F~~C~~Cgkv 504 (526)
.++....|..|..|||-
T Consensus 68 ~Ld~~~~YRvCn~CGkP 84 (96)
T 3mhs_E 68 PLDKPIQYRVCEKCGKP 84 (96)
T ss_dssp TTSSSCCCEEETTTCCE
T ss_pred cCCCcccchhhhccCCc
Confidence 34556889999999983
No 130
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=26.41 E-value=20 Score=30.95 Aligned_cols=12 Identities=25% Similarity=0.539 Sum_probs=9.8
Q ss_pred eeecCCCCeEEe
Q 009783 495 FWQCMDCNQLYW 506 (526)
Q Consensus 495 F~~C~~CgkvyW 506 (526)
--+||.||++|=
T Consensus 99 ~L~Cp~cgr~yp 110 (125)
T 3q87_A 99 SLRCDMCGLIYP 110 (125)
T ss_dssp EEEETTTCCEEE
T ss_pred EEECCCCCCEee
Confidence 457999999993
No 131
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.82 E-value=27 Score=22.27 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=15.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
+.-+.|+.||+.|=.-++..+
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~ 28 (41)
T 2ept_A 8 QRVYECQECGKSFRQKGSLTL 28 (41)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCeECCCCCCCcCCHHHHHH
Confidence 345789999999976555443
No 132
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.77 E-value=22 Score=23.38 Aligned_cols=21 Identities=10% Similarity=0.517 Sum_probs=15.8
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.|||.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2emi_A 10 ERHYECSECGKAFIQKSTLSM 30 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCCCCCCCCcccCCHHHHHH
Confidence 345789999999987665554
No 133
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=25.71 E-value=36 Score=27.81 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=23.5
Q ss_pred ccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeE
Q 009783 455 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQL 504 (526)
Q Consensus 455 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkv 504 (526)
..|..||-.-. ..+..- ++ +.-+-...+....||+|+ |++-
T Consensus 16 v~C~~C~yt~~--~~~~~C-~~-----~~H~l~~~~a~KRFFkC~-C~~R 56 (92)
T 2kwq_A 16 VTCKTCKYTHF--KPKETC-VS-----ENHDFHWHNGVKRFFKCP-CGNR 56 (92)
T ss_dssp EEETTTCCEES--SCCHHH-HH-----TTCCEEEEEEECEEEECT-TSCE
T ss_pred EEccCCcceec--CcchhH-Hh-----cCCceEEEeeeEEEEECC-CCCc
Confidence 46999996432 222222 22 123444455668899997 8863
No 134
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=25.62 E-value=34 Score=28.61 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecC-hhHH
Q 009783 370 EGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRD-AKLL 415 (526)
Q Consensus 370 g~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~RiiLTrd-~~l~ 415 (526)
+.|...||..|+-. +..|.-++..|...|-.|+|+| ++|.
T Consensus 82 ~~l~~~~~~~g~~~------~~~D~lIaA~A~~~~~~lvT~d~~df~ 122 (134)
T 3zvk_A 82 GELRTELEQKGLII------GNNDLLIASHAIAENATLVTNNIKEFK 122 (134)
T ss_dssp HHHHHHHHHTTCCC------CHHHHHHHHHHHHHTCEEEESSTTTSC
T ss_pred HHHHHHHHHcCCCC------CccHHHHHHHHHHCCCEEEECCHHHhc
Confidence 35666677777641 2456779999999999999999 6664
No 135
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.42 E-value=26 Score=32.67 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=12.5
Q ss_pred CceeecCCCCeEEe
Q 009783 493 LQFWQCMDCNQLYW 506 (526)
Q Consensus 493 ~~F~~C~~CgkvyW 506 (526)
..+|+|+.||-||-
T Consensus 169 ~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 169 DKFHLCPICGYIHK 182 (202)
T ss_dssp CCEEECSSSCCEEE
T ss_pred CcEEEECCCCCEEc
Confidence 46999999999996
No 136
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.34 E-value=43 Score=25.46 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=8.9
Q ss_pred CccccCCCccc
Q 009783 454 MSRCTKCNGRF 464 (526)
Q Consensus 454 ~sRC~~CN~~l 464 (526)
-.||..||..+
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wg2_A 15 NNRCFSCNKKV 25 (64)
T ss_dssp SCSCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 47999999864
No 137
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=25.26 E-value=34 Score=23.37 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.2
Q ss_pred CceeecCCCCeEE
Q 009783 493 LQFWQCMDCNQLY 505 (526)
Q Consensus 493 ~~F~~C~~Cgkvy 505 (526)
...+.|+.||+.+
T Consensus 7 ~~~~~C~~C~~~i 19 (39)
T 2i5o_A 7 EDQVPCEKCGSLV 19 (39)
T ss_dssp CCEEECTTTCCEE
T ss_pred CCCcccccccCcC
Confidence 3467899999975
No 138
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.25 E-value=28 Score=22.28 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=15.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
+.-+.|+.||+.|=.-++..+
T Consensus 9 ~k~~~C~~C~k~f~~~~~L~~ 29 (42)
T 2en2_A 9 EKPYKCETCGARFVQVAHLRA 29 (42)
T ss_dssp SCSEECTTTCCEESSHHHHHH
T ss_pred CCCEeCCCcChhhCCHHHHHH
Confidence 345789999999966555444
No 139
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.23 E-value=17 Score=25.97 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=9.6
Q ss_pred ceeecCCCCeEE
Q 009783 494 QFWQCMDCNQLY 505 (526)
Q Consensus 494 ~F~~C~~Cgkvy 505 (526)
.-+.||+|++.|
T Consensus 11 ~~~~CPrCn~~f 22 (49)
T 2e72_A 11 GRKICPRCNAQF 22 (49)
T ss_dssp SCCCCTTTCCCC
T ss_pred CceeCCcccccc
Confidence 456799999877
No 140
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=25.19 E-value=52 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecC-hhHHH
Q 009783 371 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRD-AKLLR 416 (526)
Q Consensus 371 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~RiiLTrd-~~l~~ 416 (526)
.|...+|..|+.. +..|.-++..|...|-.|+|+| ++|.+
T Consensus 82 ~l~~~~~~~g~~~------~~~D~lIaA~A~~~~~~lvT~d~~dF~~ 122 (132)
T 3tnd_A 82 QIRAELARQGRPV------GPFDQMIAGHARSRGLIIVTNNTREFER 122 (132)
T ss_dssp HHHHHHHHHTCCC------CHHHHHHHHHHHHTTCEEEESCCHHHHT
T ss_pred HHHHHHHHCCCCC------CchHHHHHHHHHHcCCEEEECCHHHhCC
Confidence 4555556567541 2457789999999999999999 77743
No 141
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=25.11 E-value=69 Score=26.35 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=10.5
Q ss_pred CceeecCCCCeEE
Q 009783 493 LQFWQCMDCNQLY 505 (526)
Q Consensus 493 ~~F~~C~~Cgkvy 505 (526)
..--+|+.||..|
T Consensus 51 ~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 51 HEALITRDRKQVF 63 (97)
T ss_dssp SEEEECTTSCEEE
T ss_pred CCeEEcCCCCCCc
Confidence 3456799999998
No 142
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.98 E-value=15 Score=22.60 Aligned_cols=18 Identities=11% Similarity=0.375 Sum_probs=13.7
Q ss_pred eecCCCCeEEecccchhh
Q 009783 496 WQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~~CgkvyW~GsH~~r 513 (526)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~F~~~~~L~~ 20 (33)
T 1rim_A 3 FACPECPKRFMRSDHLSK 20 (33)
T ss_dssp CCCSSSCCCCSSHHHHHH
T ss_pred ccCCCCCchhCCHHHHHH
Confidence 579999999976665544
No 143
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=24.96 E-value=80 Score=33.53 Aligned_cols=106 Identities=19% Similarity=0.120 Sum_probs=57.7
Q ss_pred CCCcEEEEEecHHhHHHHHhhcccCCCccC----cC-----CCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHc
Q 009783 102 SPDILKLGFKFKQDLIYLSSTFCSQGCDIG----FD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELL 172 (526)
Q Consensus 102 ~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~----~~-----~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~L 172 (526)
+.+...||||+-.|+..|...| .+--|. |. .-..++| |...+...... .. ....+|+.|.+.+-
T Consensus 274 ~~~kpiVgHN~l~Dl~~l~~~F--~~pLP~~~~eFk~~i~~lFP~i~D-TK~la~~~~~~--~~--~~~~~L~~l~~~l~ 346 (507)
T 3d45_A 274 NSGKLVVGHNMLLDVMHTIHQF--YCPLPADLNEFKEMAICVFPRLLD-TKLMASTQPFK--DI--INNTSLAELEKRLK 346 (507)
T ss_dssp HHCCEEEESSCHHHHHHHHHHH--TCSCCSSHHHHHHHHHHHCSCEEE-HHHHTTSTTHH--HH--CCCCCHHHHHHHTT
T ss_pred hCCCeEEEechHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhCCceeE-hHhhhhcCccc--cc--cCCCCHHHHHHHHh
Confidence 3456679999999999987765 232220 00 0134889 65433211000 00 12568999988764
Q ss_pred CCc--Ccc---cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 173 DIS--LSK---ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (526)
Q Consensus 173 g~~--L~K---~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~ 217 (526)
..+ .+. ..+...+. .+.....-|+.||+.+-.++-.|...|.
T Consensus 347 ~~~~~~p~i~~~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 347 ETPFDPPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp STTCCCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCeEEecccccccc---cCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 322 111 01111111 1122234599999999999999988764
No 144
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.87 E-value=68 Score=28.73 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=36.0
Q ss_pred EEEcCCCHHHHHHHHHHHcCccccccccCccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009783 426 YRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 505 (526)
Q Consensus 426 ~~v~~~~~~~QL~~vl~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 505 (526)
+.|.-.-...+|..+|+.| + ..|-.|..|+.+-.. +.++ -+...-|-.|..||...
T Consensus 81 lii~G~~~~~~i~~~L~~y-I-----~~YVlC~~C~sPdT~--L~~~----------------~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 81 YIVNGSHEANKLQDMLDGF-I-----KKFVLCPECENPETD--LHVN----------------PKKQTIGNSCKACGYRG 136 (157)
T ss_dssp EEEEBCCCHHHHHHHHHHH-H-----HHTTSCTTTCCSCCE--EEEE----------------TTTTEEEEECSSSCCEE
T ss_pred EEEEeeeCHHHHHHHHHHH-H-----HHeEECCCCCCCccE--EEEe----------------cCCCEEEEEccCCCCCC
Confidence 4444433457888888887 1 125679999997431 1100 01234588899999876
Q ss_pred eccc
Q 009783 506 WEVM 509 (526)
Q Consensus 506 W~Gs 509 (526)
=-..
T Consensus 137 ~V~~ 140 (157)
T 2e9h_A 137 MLDT 140 (157)
T ss_dssp ECCC
T ss_pred cccc
Confidence 5544
No 145
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=24.84 E-value=1.3e+02 Score=31.25 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=59.5
Q ss_pred HHHhhCCCCcEEEEEecHHhHHHHHhhcccCCCccC----cC-----CCCceeeHHHHHHHhhccccCCCCCcCCccHHH
Q 009783 96 LKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIG----FD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLAN 166 (526)
Q Consensus 96 L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~----~~-----~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~ 166 (526)
+..|..+.. ..||||+-.|+..+...| .|--|. |. .-..++| |...+..... ... ....+|+.
T Consensus 274 ~~~L~~s~K-piVGHN~llDl~~l~~~F--~~pLP~~~~eFk~~i~~lFP~i~D-TK~la~~~~~--~~~--~~~~sL~~ 345 (430)
T 2a1r_A 274 IHAIANSGK-LVIGHNMLLDVMHTVHQF--YCPLPADLSEFKEMTTCVFPRLLD-TKLMASTQPF--KDI--INNTSLAE 345 (430)
T ss_dssp HHHHHHHCC-EEEESSCHHHHHHHHHHH--TCCCCSSHHHHHHHHHHHCSSEEE-HHHHHTSTTT--TTT--CSCCSHHH
T ss_pred HHHHHhCCC-ceEechhHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHCCceee-hHHhhhccch--hhc--cCCCCHHH
Confidence 333444444 459999999999887665 232220 00 0145889 6544322110 011 13568999
Q ss_pred HHHHHcCCcC--cccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009783 167 ICKELLDISL--SKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (526)
Q Consensus 167 Lv~~~Lg~~L--~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~ 217 (526)
|...+-..+. ++-+.......-.-..++..-|+.||+.+-.++-.|...|.
T Consensus 346 l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~ 398 (430)
T 2a1r_A 346 LEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 398 (430)
T ss_dssp HHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 8776543322 11110000000001123345589999999999999988764
No 146
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=24.64 E-value=1.4e+02 Score=27.10 Aligned_cols=46 Identities=17% Similarity=-0.043 Sum_probs=27.5
Q ss_pred hHHHHHHhhC----CCCcEEEEEecHHhHHHHHhhcccCCCccCcCCCCceeeH
Q 009783 92 IWELLKELFV----SPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDI 141 (526)
Q Consensus 92 ~~~~L~~lL~----~~~i~KVgh~~k~Dl~~L~~~~gi~~~~~~~~~~~~~~Dl 141 (526)
+...+.+++. ..+...||||+.+|...|.+.+.-+|.. ....++|+
T Consensus 88 v~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~----~~~~~iDv 137 (186)
T 3tr8_A 88 AETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQF----FHYRHLDV 137 (186)
T ss_dssp HHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHH----SCSCEEEH
T ss_pred HHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCC----CCCcEEeH
Confidence 4445556663 1234459999999999998754322211 12467884
No 147
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.52 E-value=24 Score=23.03 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=15.8
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (44)
T 2epv_A 10 EKPYECNECGKAFIWKSLLIV 30 (44)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCeECCCCCcccCchHHHHH
Confidence 345789999999977666554
No 148
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.41 E-value=29 Score=22.83 Aligned_cols=20 Identities=10% Similarity=0.301 Sum_probs=15.6
Q ss_pred ceeecCCCCeEEecccchhh
Q 009783 494 QFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 494 ~F~~C~~CgkvyW~GsH~~r 513 (526)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eoy_A 11 KCFKCNKCEKTFSCSKYLTQ 30 (46)
T ss_dssp CCEECSSSCCEESSSHHHHH
T ss_pred CCEECcCCCCcCCCHHHHHH
Confidence 45789999999987666554
No 149
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=24.11 E-value=23 Score=38.16 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=25.3
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCCc
Q 009783 372 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 405 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~R 405 (526)
|||+||..||||.++...+.-+..+...|.++|.
T Consensus 55 laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~ 88 (564)
T 3kfl_A 55 LGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGV 88 (564)
T ss_dssp HHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTC
T ss_pred HHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCC
Confidence 8999999999998876533223467777777663
No 150
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=23.79 E-value=54 Score=38.12 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=39.9
Q ss_pred cHHHHHHHHcCC-cCcccccc--cCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009783 163 SLANICKELLDI-SLSKELQC--SDWSNRPLT---EEQKNYAAIDAHCLIEIFNIFQVKVAQK 219 (526)
Q Consensus 163 gL~~Lv~~~Lg~-~L~K~~q~--sdW~~RPL~---~~qi~YAA~DA~~ll~L~~~L~~~L~~~ 219 (526)
||.+++.-++|. +++|+..- ...+...+. .+-+.|.|.||.++.++|..+.+...+.
T Consensus 288 SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~er 350 (1172)
T 3ikm_A 288 SLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLER 350 (1172)
T ss_dssp HHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 799999999997 88886432 222222222 3348999999999999999999976654
No 151
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.53 E-value=26 Score=23.01 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2em3_A 10 EKPYECKVCSKAFTQKAHLAQ 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHH
Confidence 345789999999987766655
No 152
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=23.42 E-value=29 Score=22.77 Aligned_cols=21 Identities=10% Similarity=0.232 Sum_probs=15.5
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
+.-+.|+.|||.|=.-++..+
T Consensus 6 ekp~~C~~CgK~F~~~s~L~~ 26 (36)
T 1fv5_A 6 PARFMCLPCGIAFSSPSTLEA 26 (36)
T ss_dssp CCCCEETTTTEECSCHHHHHH
T ss_pred ccCeECCCCCCccCCHhHccC
Confidence 446789999999966665544
No 153
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=23.02 E-value=27 Score=22.97 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=16.0
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2emj_A 10 EKPFECAECGKSFSISSQLAT 30 (46)
T ss_dssp CCSEECSSSSCEESSHHHHHH
T ss_pred CCCEECCCCCcccCCHHHHHH
Confidence 345789999999987666555
No 154
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=22.81 E-value=31 Score=33.65 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.5
Q ss_pred CCceeecCCCCe
Q 009783 492 NLQFWQCMDCNQ 503 (526)
Q Consensus 492 ~~~F~~C~~Cgk 503 (526)
....|+||.|.+
T Consensus 262 gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 262 GRGTHYCPRCQR 273 (273)
T ss_dssp TEEEEECTTTCC
T ss_pred CCCeEECCCCCC
Confidence 356889999975
No 155
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.81 E-value=32 Score=22.49 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yrj_A 10 EKPYRCGECGKAFAQKANLTQ 30 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCeECCCCCCccCCHHHHHH
Confidence 345789999999987666554
No 156
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.77 E-value=30 Score=22.43 Aligned_cols=21 Identities=10% Similarity=0.427 Sum_probs=16.0
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~ 30 (44)
T 2eox_A 10 SKSYNCNECGKAFTRIFHLTR 30 (44)
T ss_dssp CCCEEETTTTEEESSSHHHHT
T ss_pred CCCeECcccCcccCCHHHHHH
Confidence 345789999999987666554
No 157
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.68 E-value=51 Score=25.03 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=8.9
Q ss_pred CccccCCCccc
Q 009783 454 MSRCTKCNGRF 464 (526)
Q Consensus 454 ~sRC~~CN~~l 464 (526)
-.||..|+..+
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wfh_A 15 PNRCTVCRKRV 25 (64)
T ss_dssp CCCCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 47999999864
No 158
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.62 E-value=30 Score=33.70 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=9.9
Q ss_pred CCceeecCCCCe
Q 009783 492 NLQFWQCMDCNQ 503 (526)
Q Consensus 492 ~~~F~~C~~Cgk 503 (526)
....|.||.|.+
T Consensus 252 gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 252 GRGTHFCPTCQG 263 (266)
T ss_dssp SCEEEECTTTTT
T ss_pred CCceEECCCCCC
Confidence 466889999986
No 159
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=22.48 E-value=32 Score=29.82 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.7
Q ss_pred CceeecCCCCeEE
Q 009783 493 LQFWQCMDCNQLY 505 (526)
Q Consensus 493 ~~F~~C~~Cgkvy 505 (526)
.+-.+|+.||++|
T Consensus 108 g~p~RCpeCG~~f 120 (129)
T 2y69_F 108 GEAQRCPSCGTHY 120 (129)
T ss_dssp SSCEECTTTCCEE
T ss_pred CCceeCCCCCeEE
Confidence 3467999999987
No 160
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.11 E-value=28 Score=22.93 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=16.0
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eoz_A 10 EKPYSCNVCGKAFVLSAHLNQ 30 (46)
T ss_dssp CCSEEETTTTEEESSHHHHHH
T ss_pred CCCeECcccChhhCCHHHHHH
Confidence 345789999999987666554
No 161
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=21.89 E-value=38 Score=24.49 Aligned_cols=14 Identities=29% Similarity=0.959 Sum_probs=11.3
Q ss_pred cCCceeecCCCCeE
Q 009783 491 KNLQFWQCMDCNQL 504 (526)
Q Consensus 491 ~~~~F~~C~~Cgkv 504 (526)
.-++.|+|+.|++.
T Consensus 7 ~~eD~WkC~~C~k~ 20 (53)
T 2cr8_A 7 GSEDEWQCTECKKF 20 (53)
T ss_dssp CCSCCEECSSSCCE
T ss_pred CCcceeeccccccc
Confidence 34679999999974
No 162
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.84 E-value=36 Score=22.05 Aligned_cols=20 Identities=10% Similarity=0.383 Sum_probs=15.5
Q ss_pred ceeecCCCCeEEecccchhh
Q 009783 494 QFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 494 ~F~~C~~CgkvyW~GsH~~r 513 (526)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQRNYLVQ 30 (44)
T ss_dssp CSEECSSSSCEESSSHHHHH
T ss_pred CCeECCCCCchhCCHHHHHH
Confidence 45789999999987666554
No 163
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.78 E-value=52 Score=27.59 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=24.0
Q ss_pred CccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEeccc
Q 009783 454 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVM 509 (526)
Q Consensus 454 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvyW~Gs 509 (526)
+.-|+.||..|.++. +. ......+.|+.||-++-..+
T Consensus 4 m~FCp~Cgn~L~~~~----------------~~---~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 4 FQYCIECNNMLYPRE----------------DK---VDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCCSSSCCCCEECC----------------CT---TTCCCCEECSSSCCEECCSC
T ss_pred ceeCcCCCCEeeEcc----------------cC---CCCeeEEECCCCCCeEEcCC
Confidence 445999999986421 00 01234678999998876543
No 164
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.69 E-value=30 Score=22.76 Aligned_cols=21 Identities=10% Similarity=0.487 Sum_probs=15.7
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.|||.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2ytp_A 10 ERHYECSECGKAFARKSTLIM 30 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCeECCcCCcccCCHHHHHH
Confidence 345789999999977665544
No 165
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.67 E-value=30 Score=30.84 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCcccc
Q 009783 435 QQLLEVIEAFQLKIS 449 (526)
Q Consensus 435 ~QL~~vl~~f~l~~~ 449 (526)
..|..+.+++||.+.
T Consensus 105 ~~l~~vA~~~Gv~v~ 119 (165)
T 2lcq_A 105 YNVQNIASLLGLRFR 119 (165)
T ss_dssp HHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHCCCeEE
Confidence 347888888888764
No 166
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.61 E-value=54 Score=26.08 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=8.5
Q ss_pred ccccCCCcccc
Q 009783 455 SRCTKCNGRFI 465 (526)
Q Consensus 455 sRC~~CN~~l~ 465 (526)
.-|+.|..++.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 35999999863
No 167
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=21.54 E-value=19 Score=29.87 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=23.2
Q ss_pred cccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeE
Q 009783 456 RCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQL 504 (526)
Q Consensus 456 RC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkv 504 (526)
-|-+||.+-. +.++ ...|.....|-+||+|...
T Consensus 15 TC~~C~tRs~-k~iS---------------k~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 15 TCKKCNTRSS-HTMS---------------KQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EETTTTEEEE-EEEE---------------HHHHHTSEEEEECTTTCCE
T ss_pred EccCCCCcch-hhcC---------------HHHhhCCEEEEEcCCCccc
Confidence 4999999753 2233 3345566789999999875
No 168
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=21.53 E-value=29 Score=36.83 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=24.6
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009783 372 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 404 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 404 (526)
++|++|+.||+|.++.+.+.-+..+...|.++|
T Consensus 41 l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 73 (524)
T 2x1l_A 41 IARFKRLDGYDVRYLTGTDVHGQKMAETAAKEG 73 (524)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHhcCCceeeeCCcCcccHHHHHHHHHcC
Confidence 799999999999988754322345777777665
No 169
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.53 E-value=27 Score=22.66 Aligned_cols=21 Identities=10% Similarity=0.346 Sum_probs=15.9
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2eoj_A 10 ENPYECCECGKVFSRKDQLVS 30 (44)
T ss_dssp CCSCEETTTTEECSSHHHHHH
T ss_pred CcCeeCCCCCCccCCHHHHHH
Confidence 345789999999987666554
No 170
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.48 E-value=30 Score=22.41 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=15.2
Q ss_pred ceeecCCCCeEEecccchhh
Q 009783 494 QFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 494 ~F~~C~~CgkvyW~GsH~~r 513 (526)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2emb_A 11 KRYECSKCQATFNLRKHLIQ 30 (44)
T ss_dssp SSEECTTTCCEESCHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 45789999999977665544
No 171
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=21.47 E-value=37 Score=21.60 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=15.6
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
+.-+.|+.||+.|-.-++..+
T Consensus 9 ~~~~~C~~C~k~f~~~~~l~~ 29 (42)
T 2epc_A 9 ETPYLCGQCGKSFTQRGSLAV 29 (42)
T ss_dssp SCCEECSSSCCEESSHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHH
Confidence 345789999999977665544
No 172
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.46 E-value=36 Score=22.27 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=16.1
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2en3_A 10 EKPFQCKECGMNFSWSCSLFK 30 (46)
T ss_dssp CCSEECSSSCCEESSSHHHHH
T ss_pred CCCeeCcccChhhCCHHHHHH
Confidence 345789999999987766555
No 173
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.45 E-value=30 Score=22.28 Aligned_cols=21 Identities=10% Similarity=0.395 Sum_probs=15.9
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2eof_A 10 EKPYECNECQKAFNTKSNLMV 30 (44)
T ss_dssp CCSEECTTTCCEESCHHHHHH
T ss_pred CCCeECCCCCcccCCHhHHHH
Confidence 345789999999977666554
No 174
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.37 E-value=25 Score=23.17 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=15.8
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.|+|.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2enh_A 10 EKPYECDVCRKAFSHHASLTQ 30 (46)
T ss_dssp SSSCBCTTTCCBCSSSHHHHH
T ss_pred CCCcCCCCcCchhCCHHHHHH
Confidence 345789999999987666554
No 175
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.35 E-value=30 Score=22.60 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=15.9
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eor_A 10 EKPYNCEECGKAFIHDSQLQE 30 (46)
T ss_dssp CCSEECTTTCCEESSHHHHHH
T ss_pred CcCccCCCCCCCcCCHHHHHH
Confidence 345789999999987666554
No 176
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.34 E-value=58 Score=25.47 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=8.8
Q ss_pred CccccCCCccc
Q 009783 454 MSRCTKCNGRF 464 (526)
Q Consensus 454 ~sRC~~CN~~l 464 (526)
-.||..|+..+
T Consensus 25 ~~RC~~C~kkv 35 (74)
T 1wfp_A 25 ATRCLSCNKKV 35 (74)
T ss_dssp CCBCSSSCCBC
T ss_pred CccchhhcCcc
Confidence 47999999864
No 177
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.23 E-value=36 Score=22.31 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=16.4
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.|++.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yto_A 10 EKPYKCSDCGKAFTRKSGLHI 30 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCEECcccCCccCCHhHHHH
Confidence 345789999999987766655
No 178
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=21.04 E-value=38 Score=34.05 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=11.4
Q ss_pred CCceeecCCCCeEEe
Q 009783 492 NLQFWQCMDCNQLYW 506 (526)
Q Consensus 492 ~~~F~~C~~CgkvyW 506 (526)
..-...|..||-|-=
T Consensus 39 ~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 39 SEGDVVCALCGLVLS 53 (345)
T ss_dssp SSCSCCCSSSCCCCC
T ss_pred CCCCEecCCCCeEcc
Confidence 345778999999873
No 179
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=20.92 E-value=36 Score=33.11 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=9.7
Q ss_pred CCceeecCCCCe
Q 009783 492 NLQFWQCMDCNQ 503 (526)
Q Consensus 492 ~~~F~~C~~Cgk 503 (526)
....|.||.|.+
T Consensus 259 gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 259 GRGTHFCPVCQQ 270 (271)
T ss_dssp TEEEEECTTTSC
T ss_pred CCceEECCCCCC
Confidence 356889999986
No 180
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.88 E-value=36 Score=22.31 Aligned_cols=21 Identities=14% Similarity=0.446 Sum_probs=16.0
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.|||.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em4_A 10 QRPYECIECGKAFKTKSSLIC 30 (46)
T ss_dssp SSSEECSSSCCEESSHHHHHH
T ss_pred CcCcCCCCCCCccCCHHHHHH
Confidence 345789999999987666554
No 181
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.81 E-value=36 Score=22.26 Aligned_cols=21 Identities=10% Similarity=0.487 Sum_probs=16.0
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ep3_A 10 EKPYRCAECGKAFTDRSNLFT 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCeECCCCCchhCCHHHHHH
Confidence 345889999999987665554
No 182
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.79 E-value=72 Score=28.23 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=25.0
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcC
Q 009783 372 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKE 403 (526)
Q Consensus 372 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E 403 (526)
++..||..||+|.++.. ....+++++.++++
T Consensus 38 va~~l~~~G~eVi~lG~-~~p~e~lv~aa~~~ 68 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGL-RQTPEQVAMAAVQE 68 (161)
T ss_dssp HHHHHHHTTCEEECCCS-BCCHHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEECCC-CCCHHHHHHHHHhc
Confidence 68999999999999864 35667888888755
No 183
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.65 E-value=49 Score=23.68 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=14.1
Q ss_pred CceeecCCCCeEEecccch
Q 009783 493 LQFWQCMDCNQLYWEVMSA 511 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~ 511 (526)
+.-+.|+.||+.|-.-++.
T Consensus 12 ~k~~~C~~C~k~F~~~~~l 30 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEAN 30 (62)
T ss_dssp SSEEECSSSCCEEEHHHHH
T ss_pred CCCccCCCCCchhccHHHh
Confidence 4568899999999654443
No 184
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=20.65 E-value=50 Score=32.00 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=22.2
Q ss_pred CccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecc
Q 009783 454 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEV 508 (526)
Q Consensus 454 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvyW~G 508 (526)
+.-|+.|++++.. . ....-.+|+.||.++|.-
T Consensus 107 ~~fC~~CG~~~~~--~---------------------~~~~~~~C~~C~~~~yp~ 138 (269)
T 1vk6_A 107 HKYCGYCGHEMYP--S---------------------KTEWAMLCSHCRERYYPQ 138 (269)
T ss_dssp TSBCTTTCCBEEE--C---------------------SSSSCEEESSSSCEECCC
T ss_pred CCccccCCCcCcc--C---------------------CCceeeeCCCCCCEecCC
Confidence 3569999998742 0 123345799999999864
No 185
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=20.65 E-value=35 Score=26.62 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=12.5
Q ss_pred ceeecCCCCeEEecc
Q 009783 494 QFWQCMDCNQLYWEV 508 (526)
Q Consensus 494 ~F~~C~~CgkvyW~G 508 (526)
-.|.|.+|++.|=-|
T Consensus 44 GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 44 SIWVCGHCGYKIAGG 58 (73)
T ss_pred EEEECCCCCcEEECC
Confidence 479999999998555
No 186
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.64 E-value=37 Score=22.20 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=16.1
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-+...+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eml_A 10 EKPYECSVCGKAFSHRQSLSV 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCeeCCCcCCccCCHHHHHH
Confidence 345789999999987666554
No 187
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=20.61 E-value=54 Score=28.49 Aligned_cols=35 Identities=17% Similarity=0.561 Sum_probs=22.1
Q ss_pred CccccCCCcccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEec
Q 009783 454 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWE 507 (526)
Q Consensus 454 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvyW~ 507 (526)
+--|+.||.-|.++. . . ....-.|.|+.||-.+-.
T Consensus 24 ~~FCPeCgNmL~pke----d---------~------~~~~l~~~CrtCgY~~~~ 58 (133)
T 3qt1_I 24 FRFCRDCNNMLYPRE----D---------K------ENNRLLFECRTCSYVEEA 58 (133)
T ss_dssp CCBCTTTCCBCBCCB----C---------T------TTCCBCCBCSSSCCBCCC
T ss_pred CeeCCCCCCEeeECc----c---------C------CCceeEEECCCCCCcEEc
Confidence 345999999986421 0 0 012347899999976543
No 188
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.61 E-value=51 Score=21.91 Aligned_cols=21 Identities=10% Similarity=0.370 Sum_probs=16.9
Q ss_pred CceeecC--CCCeEEecccchhh
Q 009783 493 LQFWQCM--DCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~--~CgkvyW~GsH~~r 513 (526)
+.-+.|+ .|||.|-.-++..+
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~L~~ 38 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYNIRS 38 (47)
T ss_dssp TTEEECCCTTCCCEECSSSSHHH
T ss_pred CCCeECCCCCCCCccCCHHHHHH
Confidence 4568895 89999998887665
No 189
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.56 E-value=37 Score=33.00 Aligned_cols=12 Identities=17% Similarity=0.623 Sum_probs=9.5
Q ss_pred CCceeecCCCCe
Q 009783 492 NLQFWQCMDCNQ 503 (526)
Q Consensus 492 ~~~F~~C~~Cgk 503 (526)
....|.||.|.+
T Consensus 257 gR~t~~CP~CQ~ 268 (268)
T 1k82_A 257 QRATFYCRQCQK 268 (268)
T ss_dssp TEEEEECTTTCC
T ss_pred CCceEECCCCCC
Confidence 356889999975
No 190
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=20.48 E-value=33 Score=19.45 Aligned_cols=18 Identities=11% Similarity=0.410 Sum_probs=13.7
Q ss_pred eecC--CCCeEEecccchhh
Q 009783 496 WQCM--DCNQLYWEVMSAYL 513 (526)
Q Consensus 496 ~~C~--~CgkvyW~GsH~~r 513 (526)
+.|+ .||+.|-.-++..+
T Consensus 3 ~~C~~~~C~k~f~~~~~l~~ 22 (29)
T 2ab3_A 3 YVCHFENCGRSFNDRRKLNR 22 (29)
T ss_dssp EEECSTTTCEEESSHHHHHH
T ss_pred CCCcCCcCcCccCCHHHHHH
Confidence 5799 99999976665544
No 191
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.43 E-value=38 Score=22.11 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eow_A 10 EKPYKCNECGKAFRARSSLAI 30 (46)
T ss_dssp CCCEECTTSCCEESSHHHHHH
T ss_pred CCCeeccccCChhcCHHHHHH
Confidence 445889999999987666555
No 192
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.29 E-value=39 Score=21.54 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=15.9
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.||+.|-.-++..+
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~ 28 (42)
T 2el5_A 8 ENPYECSECGKAFNRKDQLIS 28 (42)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCccCCCcChhhCCHHHHHH
Confidence 345789999999977666554
No 193
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.25 E-value=38 Score=22.10 Aligned_cols=21 Identities=10% Similarity=0.392 Sum_probs=16.0
Q ss_pred CceeecCCCCeEEecccchhh
Q 009783 493 LQFWQCMDCNQLYWEVMSAYL 513 (526)
Q Consensus 493 ~~F~~C~~CgkvyW~GsH~~r 513 (526)
..-+.|+.|++.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytf_A 10 EKPFECSECQKAFNTKSNLIV 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCcCCCCCCcccCCHHHHHH
Confidence 345789999999977666554
Done!