Query 009785
Match_columns 526
No_of_seqs 477 out of 3013
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 17:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1298 Squalene monooxygenase 100.0 7.6E-94 1.6E-98 677.5 43.1 469 55-523 40-509 (509)
2 PLN02985 squalene monooxygenas 100.0 6.9E-80 1.5E-84 647.4 54.5 507 4-525 2-511 (514)
3 PTZ00367 squalene epoxidase; P 100.0 1.8E-67 3.8E-72 555.3 49.7 442 60-515 33-540 (567)
4 PF08491 SE: Squalene epoxidas 100.0 9.1E-51 2E-55 380.2 27.9 272 212-484 2-276 (276)
5 PRK06126 hypothetical protein; 100.0 2.5E-48 5.4E-53 416.5 34.7 420 59-493 6-492 (545)
6 COG0654 UbiH 2-polyprenyl-6-me 100.0 9.9E-46 2.1E-50 379.5 34.3 364 60-438 2-372 (387)
7 PRK08132 FAD-dependent oxidore 100.0 9.1E-46 2E-50 396.4 35.1 402 59-478 22-461 (547)
8 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.4E-45 3E-50 393.9 32.7 403 59-477 9-445 (538)
9 PRK08013 oxidoreductase; Provi 100.0 2E-45 4.4E-50 379.3 32.1 362 60-435 3-376 (400)
10 PRK08850 2-octaprenyl-6-methox 100.0 4.7E-45 1E-49 377.5 33.7 364 59-436 3-377 (405)
11 PRK08244 hypothetical protein; 100.0 5.7E-45 1.2E-49 385.8 33.1 395 60-478 2-427 (493)
12 PRK06184 hypothetical protein; 100.0 7.2E-45 1.6E-49 385.7 31.4 394 60-477 3-421 (502)
13 TIGR01989 COQ6 Ubiquinone bios 100.0 3.7E-44 8E-49 373.5 34.8 370 61-435 1-427 (437)
14 PRK08294 phenol 2-monooxygenas 100.0 7.8E-43 1.7E-47 375.8 38.6 378 57-446 29-451 (634)
15 PRK05714 2-octaprenyl-3-methyl 100.0 4.5E-43 9.6E-48 363.0 33.7 362 60-436 2-380 (405)
16 PRK06617 2-octaprenyl-6-methox 100.0 6.8E-43 1.5E-47 357.2 34.6 347 61-436 2-358 (374)
17 PRK07364 2-octaprenyl-6-methox 100.0 7.8E-43 1.7E-47 362.6 35.3 368 56-435 14-388 (415)
18 PRK06834 hypothetical protein; 100.0 6.9E-43 1.5E-47 366.6 34.2 348 60-435 3-355 (488)
19 PRK07045 putative monooxygenas 100.0 1.9E-42 4.1E-47 356.2 36.5 359 59-430 4-372 (388)
20 PRK06185 hypothetical protein; 100.0 2.1E-42 4.6E-47 358.3 36.3 367 59-437 5-380 (407)
21 PRK08849 2-octaprenyl-3-methyl 100.0 2.3E-42 5E-47 354.7 35.1 356 60-436 3-369 (384)
22 PRK08773 2-octaprenyl-3-methyl 100.0 1.3E-42 2.7E-47 358.0 31.0 362 59-435 5-376 (392)
23 PRK09126 hypothetical protein; 100.0 2.3E-42 4.9E-47 356.4 30.3 362 60-435 3-374 (392)
24 PRK07190 hypothetical protein; 100.0 7.4E-42 1.6E-46 358.4 34.4 335 60-415 5-347 (487)
25 TIGR01988 Ubi-OHases Ubiquinon 100.0 9.2E-42 2E-46 351.1 33.0 359 62-434 1-369 (385)
26 PRK07494 2-octaprenyl-6-methox 100.0 1.9E-41 4.1E-46 349.0 32.3 357 60-435 7-371 (388)
27 PRK08020 ubiF 2-octaprenyl-3-m 100.0 5.8E-41 1.3E-45 345.7 34.2 360 60-435 5-375 (391)
28 PRK07333 2-octaprenyl-6-methox 100.0 4.7E-41 1E-45 348.0 33.0 360 61-436 2-375 (403)
29 TIGR01984 UbiH 2-polyprenyl-6- 100.0 2.2E-41 4.8E-46 347.9 30.1 356 62-435 1-367 (382)
30 PRK08243 4-hydroxybenzoate 3-m 100.0 2.6E-40 5.7E-45 340.4 36.4 357 60-434 2-371 (392)
31 PRK07608 ubiquinone biosynthes 100.0 3.4E-40 7.3E-45 339.8 34.5 361 59-435 4-373 (388)
32 PRK06753 hypothetical protein; 100.0 6.2E-40 1.3E-44 336.0 35.7 351 61-434 1-356 (373)
33 PRK07588 hypothetical protein; 100.0 4.4E-40 9.5E-45 339.0 34.6 357 61-435 1-368 (391)
34 PRK06996 hypothetical protein; 100.0 4.1E-40 8.9E-45 339.5 33.9 355 59-435 10-379 (398)
35 PRK06847 hypothetical protein; 100.0 1E-39 2.3E-44 334.6 36.6 359 60-434 4-372 (375)
36 PF01494 FAD_binding_3: FAD bi 100.0 6.7E-41 1.4E-45 340.4 24.5 336 60-407 1-355 (356)
37 PRK05732 2-octaprenyl-6-methox 100.0 8.1E-40 1.8E-44 337.8 31.0 362 59-435 2-376 (395)
38 PRK06475 salicylate hydroxylas 100.0 4.5E-39 9.8E-44 332.1 35.7 354 61-432 3-375 (400)
39 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 1E-38 2.2E-43 327.8 36.9 358 60-434 2-371 (390)
40 PRK07538 hypothetical protein; 100.0 4.3E-38 9.4E-43 326.2 34.4 337 61-410 1-361 (413)
41 PRK08163 salicylate hydroxylas 100.0 7.7E-38 1.7E-42 323.1 35.2 354 58-431 2-370 (396)
42 PRK05868 hypothetical protein; 100.0 6.2E-38 1.3E-42 319.7 33.0 352 61-430 2-366 (372)
43 TIGR03219 salicylate_mono sali 100.0 3.1E-37 6.7E-42 320.1 30.9 341 62-418 2-376 (414)
44 PRK07236 hypothetical protein; 100.0 1.3E-36 2.8E-41 312.5 34.1 331 60-418 6-378 (386)
45 PLN02927 antheraxanthin epoxid 100.0 2.7E-35 5.9E-40 312.1 36.2 345 57-415 78-446 (668)
46 KOG2614 Kynurenine 3-monooxyge 100.0 1E-33 2.2E-38 274.7 20.5 308 60-378 2-326 (420)
47 PLN00093 geranylgeranyl diphos 100.0 7.4E-32 1.6E-36 279.6 33.7 344 59-430 38-398 (450)
48 TIGR02023 BchP-ChlP geranylger 100.0 6.3E-31 1.4E-35 270.3 36.0 333 61-428 1-347 (388)
49 TIGR02028 ChlP geranylgeranyl 100.0 7.8E-31 1.7E-35 269.6 33.4 342 61-430 1-359 (398)
50 TIGR02032 GG-red-SF geranylger 100.0 2.9E-29 6.3E-34 248.4 28.6 285 61-374 1-295 (295)
51 COG0644 FixC Dehydrogenases (f 100.0 3.3E-28 7.2E-33 250.3 33.5 319 59-405 2-329 (396)
52 PRK08255 salicylyl-CoA 5-hydro 100.0 1.8E-29 3.8E-34 278.4 24.7 322 61-417 1-341 (765)
53 PRK11445 putative oxidoreducta 100.0 2.3E-28 4.9E-33 247.7 28.4 308 61-404 2-320 (351)
54 KOG3855 Monooxygenase involved 100.0 8.5E-28 1.8E-32 231.5 21.7 365 58-428 34-457 (481)
55 PRK10015 oxidoreductase; Provi 99.9 5.4E-25 1.2E-29 228.0 34.2 360 60-436 5-394 (429)
56 TIGR01790 carotene-cycl lycope 99.9 3.2E-24 6.8E-29 221.0 33.3 306 62-403 1-321 (388)
57 PRK10157 putative oxidoreducta 99.9 1.1E-23 2.4E-28 218.6 34.1 324 60-401 5-356 (428)
58 PLN02697 lycopene epsilon cycl 99.9 1.1E-22 2.4E-27 213.1 33.7 321 59-415 107-454 (529)
59 PF04820 Trp_halogenase: Trypt 99.9 1.1E-23 2.4E-28 218.9 23.8 335 62-426 1-396 (454)
60 PLN02463 lycopene beta cyclase 99.9 1E-20 2.2E-25 195.5 34.0 289 58-379 26-333 (447)
61 TIGR01789 lycopene_cycl lycope 99.9 6.4E-20 1.4E-24 186.3 28.2 298 62-409 1-315 (370)
62 PF05834 Lycopene_cycl: Lycope 99.8 2.4E-18 5.2E-23 175.6 27.8 277 62-376 1-290 (374)
63 KOG2415 Electron transfer flav 99.7 8.7E-15 1.9E-19 141.7 20.6 306 57-378 73-422 (621)
64 PRK04176 ribulose-1,5-biphosph 99.6 2E-14 4.4E-19 138.2 14.5 141 60-231 25-181 (257)
65 TIGR00292 thiazole biosynthesi 99.5 8.9E-14 1.9E-18 133.3 15.0 140 60-230 21-177 (254)
66 PF01946 Thi4: Thi4 family; PD 99.5 5E-13 1.1E-17 120.6 15.0 138 60-228 17-170 (230)
67 PRK01747 mnmC bifunctional tRN 99.5 2.7E-12 5.8E-17 140.9 22.7 214 1-224 192-464 (662)
68 COG1635 THI4 Ribulose 1,5-bisp 99.5 7.9E-13 1.7E-17 118.3 13.5 139 60-229 30-184 (262)
69 COG0578 GlpA Glycerol-3-phosph 99.4 1.9E-11 4.2E-16 126.1 20.3 213 59-274 11-281 (532)
70 PRK12266 glpD glycerol-3-phosp 99.4 5.5E-11 1.2E-15 126.2 24.5 168 58-227 4-221 (508)
71 KOG0042 Glycerol-3-phosphate d 99.4 6.8E-12 1.5E-16 125.7 15.3 172 58-231 65-296 (680)
72 PRK13369 glycerol-3-phosphate 99.4 1.1E-10 2.3E-15 124.1 24.7 168 58-227 4-220 (502)
73 PRK05192 tRNA uridine 5-carbox 99.3 2E-11 4.4E-16 128.5 15.9 149 59-224 3-158 (618)
74 PRK06481 fumarate reductase fl 99.3 3.6E-11 7.7E-16 127.7 17.8 168 57-228 58-256 (506)
75 PF01134 GIDA: Glucose inhibit 99.3 4.3E-11 9.2E-16 119.8 14.8 148 62-224 1-153 (392)
76 PLN02464 glycerol-3-phosphate 99.3 5.7E-10 1.2E-14 120.9 24.7 73 158-231 228-305 (627)
77 COG2081 Predicted flavoprotein 99.3 4.6E-11 1E-15 117.2 13.9 144 59-224 2-168 (408)
78 TIGR01377 soxA_mon sarcosine o 99.3 1.4E-09 2.9E-14 111.8 25.0 70 157-233 140-211 (380)
79 PLN02661 Putative thiazole syn 99.3 1.2E-10 2.5E-15 114.9 15.9 136 59-224 91-245 (357)
80 PF01266 DAO: FAD dependent ox 99.2 1E-10 2.2E-15 118.8 14.4 69 156-230 141-211 (358)
81 PF12831 FAD_oxidored: FAD dep 99.2 4E-12 8.7E-17 132.1 2.5 153 62-231 1-157 (428)
82 PRK08274 tricarballylate dehyd 99.2 3.4E-10 7.3E-15 119.5 16.3 67 162-229 131-198 (466)
83 PRK12409 D-amino acid dehydrog 99.2 6.5E-09 1.4E-13 108.0 24.8 69 160-230 195-266 (410)
84 PRK11259 solA N-methyltryptoph 99.2 3.8E-09 8.2E-14 108.4 22.7 60 158-224 145-205 (376)
85 PRK00711 D-amino acid dehydrog 99.2 5E-09 1.1E-13 109.0 23.5 60 159-224 198-258 (416)
86 PRK07121 hypothetical protein; 99.2 9.7E-10 2.1E-14 116.7 17.9 65 162-228 177-244 (492)
87 PF03486 HI0933_like: HI0933-l 99.2 3.7E-10 8E-15 115.5 14.1 144 61-224 1-167 (409)
88 TIGR01813 flavo_cyto_c flavocy 99.2 3.9E-10 8.4E-15 118.1 14.0 164 62-226 1-195 (439)
89 PRK11101 glpA sn-glycerol-3-ph 99.1 8.1E-10 1.8E-14 118.3 16.4 73 158-231 145-220 (546)
90 TIGR01373 soxB sarcosine oxida 99.1 4.4E-09 9.6E-14 109.1 21.1 68 159-232 180-250 (407)
91 PF00890 FAD_binding_2: FAD bi 99.1 4.6E-10 1E-14 116.8 13.3 63 161-224 140-204 (417)
92 TIGR00551 nadB L-aspartate oxi 99.1 1.2E-09 2.5E-14 115.7 16.6 65 162-227 128-193 (488)
93 PRK11728 hydroxyglutarate oxid 99.1 5.8E-09 1.2E-13 107.7 20.5 69 157-232 144-214 (393)
94 PRK09231 fumarate reductase fl 99.1 1.4E-09 3.1E-14 117.1 16.3 64 163-226 134-199 (582)
95 TIGR01812 sdhA_frdA_Gneg succi 99.1 1.7E-09 3.7E-14 116.8 16.6 64 163-227 130-195 (566)
96 TIGR01176 fum_red_Fp fumarate 99.1 1.9E-09 4.1E-14 115.9 16.7 63 163-225 133-197 (580)
97 PRK06069 sdhA succinate dehydr 99.1 3.1E-09 6.8E-14 114.7 17.9 65 163-227 138-204 (577)
98 PRK06854 adenylylsulfate reduc 99.1 2.5E-09 5.5E-14 115.7 17.0 158 60-224 11-196 (608)
99 TIGR01320 mal_quin_oxido malat 99.1 2.3E-09 4.9E-14 112.8 15.3 74 157-232 173-250 (483)
100 PRK06175 L-aspartate oxidase; 99.1 1.5E-09 3.2E-14 113.0 13.5 62 163-225 129-191 (433)
101 PRK07804 L-aspartate oxidase; 99.1 3.6E-09 7.9E-14 113.2 16.8 164 57-227 13-214 (541)
102 PRK12834 putative FAD-binding 99.1 9.8E-10 2.1E-14 118.0 12.1 67 163-229 149-233 (549)
103 TIGR00136 gidA glucose-inhibit 99.0 3.4E-09 7.4E-14 111.7 15.0 153 61-230 1-161 (617)
104 PRK05257 malate:quinone oxidor 99.0 2.6E-09 5.5E-14 112.5 14.0 76 156-232 177-256 (494)
105 COG0579 Predicted dehydrogenas 99.0 3.9E-09 8.4E-14 107.1 14.5 164 59-233 2-222 (429)
106 PRK06452 sdhA succinate dehydr 99.0 2.8E-09 6.1E-14 114.6 13.7 62 163-225 137-200 (566)
107 PTZ00139 Succinate dehydrogena 99.0 5.6E-09 1.2E-13 113.2 16.0 62 163-225 167-231 (617)
108 PRK07843 3-ketosteroid-delta-1 99.0 4.5E-09 9.6E-14 112.9 15.1 64 163-228 209-274 (557)
109 PRK05945 sdhA succinate dehydr 99.0 3.7E-09 8.1E-14 114.0 14.6 62 163-225 136-199 (575)
110 PRK06263 sdhA succinate dehydr 99.0 6.7E-09 1.5E-13 111.4 16.2 62 163-225 135-199 (543)
111 KOG2820 FAD-dependent oxidored 99.0 1.9E-08 4E-13 96.2 16.9 174 57-233 4-224 (399)
112 PLN00128 Succinate dehydrogena 99.0 6.9E-09 1.5E-13 112.5 16.1 62 163-225 188-252 (635)
113 PRK07573 sdhA succinate dehydr 99.0 4.5E-09 9.8E-14 114.3 14.6 59 166-225 174-234 (640)
114 PRK09078 sdhA succinate dehydr 99.0 9.7E-09 2.1E-13 111.1 17.1 62 163-225 150-214 (598)
115 PRK09077 L-aspartate oxidase; 99.0 9.7E-09 2.1E-13 109.9 16.9 65 163-227 139-211 (536)
116 PRK12837 3-ketosteroid-delta-1 99.0 1.5E-09 3.2E-14 115.5 10.3 64 163-227 174-239 (513)
117 PRK08275 putative oxidoreducta 99.0 8.8E-09 1.9E-13 110.7 16.3 62 163-225 138-202 (554)
118 PLN02172 flavin-containing mon 99.0 7.5E-09 1.6E-13 108.1 15.0 155 60-224 10-174 (461)
119 PRK12844 3-ketosteroid-delta-1 99.0 1.4E-08 3E-13 109.1 17.3 64 163-228 209-274 (557)
120 PRK12845 3-ketosteroid-delta-1 99.0 1.5E-08 3.3E-13 108.6 17.0 64 163-228 218-283 (564)
121 PRK08071 L-aspartate oxidase; 99.0 1.1E-08 2.4E-13 108.7 15.8 61 163-225 131-192 (510)
122 PRK07803 sdhA succinate dehydr 99.0 1.3E-08 2.8E-13 110.6 16.6 63 163-225 139-215 (626)
123 PRK13339 malate:quinone oxidor 99.0 1.5E-08 3.2E-13 106.1 16.2 76 156-232 178-257 (497)
124 PRK07057 sdhA succinate dehydr 99.0 1.2E-08 2.7E-13 110.2 15.9 62 163-225 149-213 (591)
125 PRK08641 sdhA succinate dehydr 99.0 1.6E-08 3.4E-13 109.3 16.7 63 163-225 134-202 (589)
126 PRK08626 fumarate reductase fl 99.0 1.3E-08 2.7E-13 111.0 15.7 62 163-225 159-222 (657)
127 PRK08958 sdhA succinate dehydr 99.0 8.8E-09 1.9E-13 111.1 14.4 62 163-225 144-208 (588)
128 PLN02815 L-aspartate oxidase 98.9 1.2E-08 2.6E-13 109.7 15.2 164 58-225 27-224 (594)
129 COG0665 DadA Glycine/D-amino a 98.9 7.9E-08 1.7E-12 99.0 20.3 63 157-225 151-214 (387)
130 PRK07395 L-aspartate oxidase; 98.9 1.8E-08 3.9E-13 107.8 15.8 62 163-225 135-199 (553)
131 PRK12835 3-ketosteroid-delta-1 98.9 1.5E-08 3.2E-13 109.3 15.1 62 164-227 215-279 (584)
132 PRK12839 hypothetical protein; 98.9 3.1E-08 6.8E-13 106.4 17.4 62 162-224 214-277 (572)
133 PRK08205 sdhA succinate dehydr 98.9 2.1E-08 4.5E-13 108.4 16.0 62 163-225 141-208 (583)
134 PRK12842 putative succinate de 98.9 3.4E-08 7.3E-13 106.7 17.1 61 163-225 215-277 (574)
135 TIGR03329 Phn_aa_oxid putative 98.9 2E-08 4.3E-13 105.8 15.0 60 157-224 178-238 (460)
136 PTZ00306 NADH-dependent fumara 98.9 1E-08 2.2E-13 118.8 13.7 166 58-226 407-623 (1167)
137 PRK06134 putative FAD-binding 98.9 1.9E-08 4E-13 108.7 15.0 61 163-225 218-280 (581)
138 PRK08401 L-aspartate oxidase; 98.9 2.7E-08 5.8E-13 104.8 15.4 59 163-227 121-179 (466)
139 KOG2852 Possible oxidoreductas 98.9 1.1E-07 2.3E-12 89.0 16.7 162 60-224 10-209 (380)
140 PF13738 Pyr_redox_3: Pyridine 98.9 6.5E-09 1.4E-13 96.8 8.1 136 64-224 1-139 (203)
141 TIGR01292 TRX_reduct thioredox 98.8 4.3E-08 9.3E-13 97.1 14.2 113 61-224 1-113 (300)
142 COG0492 TrxB Thioredoxin reduc 98.8 3.7E-08 8E-13 96.8 13.3 114 59-224 2-116 (305)
143 KOG2853 Possible oxidoreductas 98.8 1.3E-07 2.8E-12 90.3 16.3 74 158-232 239-330 (509)
144 PRK07512 L-aspartate oxidase; 98.8 4.1E-08 8.9E-13 104.4 14.6 62 163-225 137-199 (513)
145 PRK12843 putative FAD-binding 98.8 1.6E-08 3.4E-13 109.2 11.5 65 163-229 222-288 (578)
146 PRK05335 tRNA (uracil-5-)-meth 98.8 1.6E-08 3.5E-13 102.4 10.6 114 61-189 3-126 (436)
147 PLN02612 phytoene desaturase 98.8 1.3E-06 2.8E-11 94.1 25.8 62 60-121 93-170 (567)
148 PTZ00383 malate:quinone oxidor 98.8 3.7E-08 8.1E-13 103.4 13.3 69 158-231 207-282 (497)
149 TIGR03143 AhpF_homolog putativ 98.8 4.6E-08 1E-12 105.1 13.7 114 59-225 3-116 (555)
150 TIGR01811 sdhA_Bsu succinate d 98.8 5.8E-08 1.3E-12 105.0 14.3 63 163-225 130-198 (603)
151 PRK05976 dihydrolipoamide dehy 98.8 2.2E-08 4.7E-13 105.9 10.6 35 58-92 2-36 (472)
152 PRK06467 dihydrolipoamide dehy 98.8 4.6E-08 1E-12 103.2 13.0 36 58-93 2-37 (471)
153 TIGR03364 HpnW_proposed FAD de 98.8 3.5E-08 7.7E-13 100.8 11.7 34 61-94 1-34 (365)
154 PLN02487 zeta-carotene desatur 98.8 2.7E-06 5.8E-11 90.9 26.2 63 60-122 75-153 (569)
155 TIGR02061 aprA adenosine phosp 98.8 3.5E-08 7.5E-13 106.2 12.0 61 163-224 127-192 (614)
156 PRK07233 hypothetical protein; 98.8 2E-06 4.2E-11 90.0 24.7 59 62-120 1-74 (434)
157 TIGR02731 phytoene_desat phyto 98.8 9.1E-07 2E-11 93.1 22.2 60 62-121 1-76 (453)
158 KOG1399 Flavin-containing mono 98.8 6.7E-08 1.4E-12 99.4 13.0 140 60-223 6-153 (448)
159 PRK15317 alkyl hydroperoxide r 98.8 1.3E-07 2.8E-12 100.9 15.3 113 58-223 209-322 (517)
160 PRK13800 putative oxidoreducta 98.8 2E-07 4.4E-12 105.6 17.3 162 59-225 12-207 (897)
161 TIGR00562 proto_IX_ox protopor 98.8 4.8E-06 1E-10 87.9 26.7 61 61-121 3-82 (462)
162 COG0029 NadB Aspartate oxidase 98.7 9.4E-08 2E-12 96.4 12.7 65 163-227 134-200 (518)
163 TIGR02734 crtI_fam phytoene de 98.7 2.8E-06 6.1E-11 90.6 24.4 62 163-229 220-282 (502)
164 PRK06416 dihydrolipoamide dehy 98.7 1.4E-07 3E-12 99.5 13.7 34 60-93 4-37 (462)
165 TIGR02732 zeta_caro_desat caro 98.7 4.2E-06 9.1E-11 88.3 24.4 61 62-122 1-77 (474)
166 KOG2404 Fumarate reductase, fl 98.7 2.7E-08 5.9E-13 94.2 6.8 162 62-225 11-208 (477)
167 COG2072 TrkA Predicted flavopr 98.7 1.7E-07 3.7E-12 97.5 13.5 37 59-95 7-44 (443)
168 COG1053 SdhA Succinate dehydro 98.7 1.2E-07 2.5E-12 100.8 12.0 170 58-227 4-206 (562)
169 PRK14694 putative mercuric red 98.7 2.6E-07 5.6E-12 97.6 14.4 33 60-92 6-38 (468)
170 PRK05249 soluble pyridine nucl 98.7 9.5E-08 2.1E-12 100.8 10.6 35 60-94 5-39 (461)
171 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 2E-07 4.4E-12 95.1 12.4 115 61-189 1-124 (433)
172 PRK08010 pyridine nucleotide-d 98.7 3E-07 6.6E-12 96.4 14.1 34 60-93 3-36 (441)
173 TIGR00275 flavoprotein, HI0933 98.7 2.1E-07 4.6E-12 96.0 12.7 141 64-223 1-160 (400)
174 TIGR03140 AhpF alkyl hydropero 98.6 3.3E-07 7.2E-12 97.7 14.1 113 58-223 210-323 (515)
175 PRK07208 hypothetical protein; 98.6 8.3E-07 1.8E-11 94.2 16.9 40 58-97 2-41 (479)
176 PRK12416 protoporphyrinogen ox 98.6 3.9E-06 8.4E-11 88.7 21.9 60 62-121 3-83 (463)
177 PRK06115 dihydrolipoamide dehy 98.6 2.9E-07 6.2E-12 97.1 12.7 34 60-93 3-36 (466)
178 TIGR01424 gluta_reduc_2 glutat 98.6 3.7E-07 8E-12 95.8 13.4 33 60-92 2-34 (446)
179 PRK06327 dihydrolipoamide dehy 98.6 2.7E-07 5.8E-12 97.6 12.4 33 59-91 3-35 (475)
180 TIGR02485 CobZ_N-term precorri 98.6 3.8E-07 8.3E-12 95.3 13.4 63 163-229 124-189 (432)
181 PLN02507 glutathione reductase 98.6 4.4E-07 9.4E-12 96.3 13.7 34 59-92 24-57 (499)
182 COG3380 Predicted NAD/FAD-depe 98.6 1.5E-06 3.2E-11 81.0 15.0 36 61-96 2-37 (331)
183 PRK13748 putative mercuric red 98.6 7.8E-07 1.7E-11 96.3 14.6 34 59-92 97-130 (561)
184 PRK06116 glutathione reductase 98.6 4.3E-07 9.4E-12 95.4 12.1 34 59-92 3-36 (450)
185 PRK10262 thioredoxin reductase 98.6 9.7E-07 2.1E-11 88.5 14.0 113 59-223 5-117 (321)
186 PRK13977 myosin-cross-reactive 98.6 2.5E-06 5.4E-11 89.7 17.3 61 163-224 227-294 (576)
187 PRK07251 pyridine nucleotide-d 98.5 6.8E-07 1.5E-11 93.6 12.7 34 60-93 3-36 (438)
188 PTZ00363 rab-GDP dissociation 98.5 3.2E-05 6.9E-10 80.3 24.6 41 57-97 1-41 (443)
189 TIGR01350 lipoamide_DH dihydro 98.5 5.2E-06 1.1E-10 87.6 19.3 60 163-226 212-272 (461)
190 PRK07818 dihydrolipoamide dehy 98.5 8.3E-07 1.8E-11 93.7 13.1 34 59-92 3-36 (466)
191 PF00743 FMO-like: Flavin-bind 98.5 6.5E-07 1.4E-11 95.0 11.7 143 62-224 3-151 (531)
192 COG1231 Monoamine oxidase [Ami 98.5 3.3E-05 7.1E-10 77.8 22.7 41 59-99 6-46 (450)
193 PRK06370 mercuric reductase; V 98.5 5.6E-06 1.2E-10 87.4 18.5 37 57-93 2-38 (463)
194 PF06039 Mqo: Malate:quinone o 98.5 2E-06 4.3E-11 86.7 12.8 77 156-232 175-254 (488)
195 COG0445 GidA Flavin-dependent 98.4 6.8E-07 1.5E-11 91.1 9.3 146 59-224 3-159 (621)
196 PRK14727 putative mercuric red 98.4 2.9E-06 6.3E-11 89.8 14.3 35 59-93 15-49 (479)
197 PF13450 NAD_binding_8: NAD(P) 98.4 3.5E-07 7.7E-12 68.6 5.3 32 65-96 1-32 (68)
198 TIGR01421 gluta_reduc_1 glutat 98.4 1.1E-06 2.3E-11 92.3 10.3 33 60-92 2-34 (450)
199 PF00732 GMC_oxred_N: GMC oxid 98.4 4.8E-06 1E-10 82.4 14.4 61 164-224 194-259 (296)
200 PRK07845 flavoprotein disulfid 98.4 2.7E-06 5.9E-11 89.7 12.8 145 62-224 3-152 (466)
201 PTZ00058 glutathione reductase 98.4 1.1E-06 2.3E-11 94.0 9.3 34 59-92 47-80 (561)
202 PF07992 Pyr_redox_2: Pyridine 98.4 4E-07 8.6E-12 84.5 5.3 32 62-93 1-32 (201)
203 TIGR02462 pyranose_ox pyranose 98.4 6.5E-06 1.4E-10 87.1 14.9 57 174-230 225-286 (544)
204 KOG2844 Dimethylglycine dehydr 98.4 4.9E-06 1.1E-10 86.4 13.2 65 154-224 179-244 (856)
205 PLN02546 glutathione reductase 98.3 1.5E-06 3.2E-11 93.0 9.5 33 59-91 78-110 (558)
206 PF00070 Pyr_redox: Pyridine n 98.3 1.2E-05 2.5E-10 62.7 11.9 77 62-201 1-78 (80)
207 TIGR01438 TGR thioredoxin and 98.3 5.5E-06 1.2E-10 87.6 13.1 33 60-92 2-34 (484)
208 TIGR01372 soxA sarcosine oxida 98.3 8.8E-06 1.9E-10 93.2 15.6 36 59-94 162-197 (985)
209 PTZ00052 thioredoxin reductase 98.3 5.7E-06 1.2E-10 87.9 13.1 33 60-92 5-37 (499)
210 PRK06292 dihydrolipoamide dehy 98.3 1E-05 2.3E-10 85.3 13.6 34 59-92 2-35 (460)
211 PRK06912 acoL dihydrolipoamide 98.3 4.9E-06 1.1E-10 87.7 11.0 32 62-93 2-33 (458)
212 TIGR03378 glycerol3P_GlpB glyc 98.3 1.6E-05 3.5E-10 81.0 14.2 59 163-224 264-324 (419)
213 TIGR01423 trypano_reduc trypan 98.2 4.6E-06 1E-10 88.0 10.0 33 60-92 3-36 (486)
214 COG1249 Lpd Pyruvate/2-oxoglut 98.2 7.5E-06 1.6E-10 84.8 11.0 36 58-93 2-37 (454)
215 TIGR02053 MerA mercuric reduct 98.2 9.7E-06 2.1E-10 85.6 12.2 33 61-93 1-33 (463)
216 KOG1335 Dihydrolipoamide dehyd 98.2 9.3E-05 2E-09 72.4 17.4 69 163-233 253-323 (506)
217 COG1233 Phytoene dehydrogenase 98.2 1.6E-06 3.6E-11 91.6 6.0 54 163-221 225-279 (487)
218 PF13454 NAD_binding_9: FAD-NA 98.2 5.7E-06 1.2E-10 73.5 8.4 30 64-93 1-35 (156)
219 PRK09564 coenzyme A disulfide 98.2 1E-05 2.2E-10 84.9 11.4 33 62-94 2-36 (444)
220 KOG3923 D-aspartate oxidase [A 98.2 0.00011 2.4E-09 69.6 16.5 215 60-302 3-266 (342)
221 COG3573 Predicted oxidoreducta 98.2 2.5E-05 5.3E-10 74.9 12.3 37 59-95 4-40 (552)
222 PRK02106 choline dehydrogenase 98.2 3E-05 6.6E-10 83.8 14.7 59 167-225 205-264 (560)
223 PRK13512 coenzyme A disulfide 98.2 1.4E-05 3E-10 83.7 11.5 33 62-94 3-37 (438)
224 PRK09897 hypothetical protein; 98.2 1.4E-05 3E-10 84.7 11.5 34 61-94 2-37 (534)
225 TIGR01810 betA choline dehydro 98.1 4.4E-05 9.4E-10 82.1 13.7 60 165-224 196-257 (532)
226 PTZ00153 lipoamide dehydrogena 98.1 3.8E-05 8.2E-10 83.5 13.1 33 60-92 116-148 (659)
227 PRK12779 putative bifunctional 98.1 1.8E-05 3.9E-10 89.6 10.6 34 60-93 306-339 (944)
228 PRK12810 gltD glutamate syntha 98.1 0.00014 3E-09 76.9 16.7 36 60-95 143-178 (471)
229 PF13434 K_oxygenase: L-lysine 98.0 2.6E-05 5.7E-10 78.3 10.3 152 60-228 2-164 (341)
230 PRK11749 dihydropyrimidine deh 98.0 0.00011 2.3E-09 77.5 15.1 36 60-95 140-175 (457)
231 PTZ00318 NADH dehydrogenase-li 98.0 3.3E-05 7.2E-10 80.5 11.0 111 60-224 10-126 (424)
232 PRK07818 dihydrolipoamide dehy 98.0 0.00019 4E-09 75.9 16.8 103 61-226 173-276 (466)
233 COG3634 AhpF Alkyl hydroperoxi 98.0 7.9E-06 1.7E-10 78.6 5.3 115 57-223 208-325 (520)
234 KOG2311 NAD/FAD-utilizing prot 98.0 2E-05 4.4E-10 78.8 8.3 152 58-231 26-192 (679)
235 COG1232 HemY Protoporphyrinoge 98.0 1.9E-05 4.2E-10 81.0 7.9 61 62-122 2-79 (444)
236 KOG0029 Amine oxidase [Seconda 97.9 1E-05 2.2E-10 84.9 5.7 41 59-99 14-54 (501)
237 COG1249 Lpd Pyruvate/2-oxoglut 97.9 0.00015 3.2E-09 75.3 14.1 100 61-225 174-274 (454)
238 PRK06416 dihydrolipoamide dehy 97.9 0.00035 7.5E-09 73.8 17.1 101 61-225 173-274 (462)
239 TIGR03169 Nterm_to_SelD pyridi 97.9 3.9E-05 8.4E-10 78.4 9.6 106 62-225 1-109 (364)
240 PRK06327 dihydrolipoamide dehy 97.9 0.0002 4.3E-09 75.8 14.5 102 61-225 184-286 (475)
241 KOG2665 Predicted FAD-dependen 97.9 2.3E-05 4.9E-10 74.6 6.4 39 57-95 45-85 (453)
242 PRK04965 NADH:flavorubredoxin 97.9 0.00016 3.5E-09 74.2 13.3 98 61-224 142-240 (377)
243 TIGR02730 carot_isom carotene 97.9 1.4E-05 3E-10 85.1 5.6 63 163-230 230-293 (493)
244 PRK06912 acoL dihydrolipoamide 97.9 0.00021 4.6E-09 75.3 14.3 99 61-225 171-270 (458)
245 PRK05249 soluble pyridine nucl 97.9 0.00035 7.6E-09 73.7 15.9 99 61-226 176-275 (461)
246 PLN02576 protoporphyrinogen ox 97.9 2E-05 4.4E-10 84.0 6.3 40 59-98 11-51 (496)
247 TIGR02733 desat_CrtD C-3',4' d 97.9 1.7E-05 3.6E-10 84.5 5.6 36 61-96 2-37 (492)
248 PRK12771 putative glutamate sy 97.9 0.00027 5.9E-09 76.4 14.8 36 60-95 137-172 (564)
249 PRK05976 dihydrolipoamide dehy 97.8 0.00024 5.2E-09 75.2 14.0 101 61-225 181-283 (472)
250 COG1206 Gid NAD(FAD)-utilizing 97.8 4.4E-05 9.5E-10 73.2 7.4 117 60-190 3-128 (439)
251 TIGR02053 MerA mercuric reduct 97.8 0.00057 1.2E-08 72.2 16.8 101 61-225 167-268 (463)
252 COG3349 Uncharacterized conser 97.8 1.9E-05 4.1E-10 81.0 5.1 38 62-99 2-39 (485)
253 PRK11883 protoporphyrinogen ox 97.8 2.1E-05 4.6E-10 82.7 5.6 59 62-120 2-77 (451)
254 PRK07846 mycothione reductase; 97.8 5.3E-05 1.1E-09 79.6 8.3 31 60-92 1-31 (451)
255 PRK06115 dihydrolipoamide dehy 97.8 0.00036 7.9E-09 73.6 14.6 102 61-225 175-278 (466)
256 PRK09754 phenylpropionate diox 97.8 8.8E-05 1.9E-09 76.6 9.7 34 61-94 4-39 (396)
257 COG1252 Ndh NADH dehydrogenase 97.8 0.00013 2.9E-09 73.9 10.2 108 60-224 3-112 (405)
258 KOG2960 Protein involved in th 97.8 6.9E-05 1.5E-09 67.3 7.1 134 60-225 76-236 (328)
259 PLN02268 probable polyamine ox 97.8 2.9E-05 6.4E-10 81.3 5.6 38 61-98 1-38 (435)
260 KOG0404 Thioredoxin reductase 97.8 0.00023 5E-09 64.6 10.2 117 60-223 8-124 (322)
261 PRK07251 pyridine nucleotide-d 97.8 0.0007 1.5E-08 70.9 15.7 97 61-225 158-255 (438)
262 PRK06467 dihydrolipoamide dehy 97.8 0.00042 9.1E-09 73.2 14.1 102 61-226 175-277 (471)
263 PRK09754 phenylpropionate diox 97.8 0.00033 7.2E-09 72.4 13.0 98 61-225 145-243 (396)
264 COG1148 HdrA Heterodisulfide r 97.7 3.3E-05 7.1E-10 77.7 5.1 38 61-98 125-162 (622)
265 TIGR00031 UDP-GALP_mutase UDP- 97.7 3.7E-05 8E-10 78.0 5.6 36 61-96 2-37 (377)
266 COG3075 GlpB Anaerobic glycero 97.7 4.4E-05 9.6E-10 73.2 5.4 35 60-94 2-36 (421)
267 PRK15317 alkyl hydroperoxide r 97.7 0.00035 7.5E-09 74.8 12.9 96 61-223 352-449 (517)
268 TIGR03315 Se_ygfK putative sel 97.7 4.8E-05 1E-09 85.6 5.8 35 60-94 537-571 (1012)
269 TIGR03140 AhpF alkyl hydropero 97.7 0.00056 1.2E-08 73.2 13.5 96 61-223 353-450 (515)
270 PLN02568 polyamine oxidase 97.7 7.1E-05 1.5E-09 79.9 6.4 40 59-98 4-48 (539)
271 TIGR02352 thiamin_ThiO glycine 97.6 0.0029 6.3E-08 63.6 17.4 63 156-224 131-194 (337)
272 TIGR01421 gluta_reduc_1 glutat 97.6 0.0017 3.8E-08 68.2 16.2 100 61-225 167-267 (450)
273 TIGR01424 gluta_reduc_2 glutat 97.6 0.0018 3.9E-08 68.0 16.3 98 61-225 167-265 (446)
274 PRK06116 glutathione reductase 97.6 0.00079 1.7E-08 70.8 13.6 99 61-225 168-267 (450)
275 PLN02507 glutathione reductase 97.6 0.0016 3.4E-08 69.3 15.9 98 61-225 204-302 (499)
276 KOG1276 Protoporphyrinogen oxi 97.6 0.00019 4.2E-09 71.3 8.1 69 59-127 10-99 (491)
277 PRK12831 putative oxidoreducta 97.6 8.9E-05 1.9E-09 78.0 5.7 35 60-94 140-174 (464)
278 PRK04965 NADH:flavorubredoxin 97.6 0.00039 8.4E-09 71.3 10.3 34 61-94 3-38 (377)
279 PRK06292 dihydrolipoamide dehy 97.6 0.00097 2.1E-08 70.4 13.5 101 61-226 170-271 (460)
280 PRK08010 pyridine nucleotide-d 97.6 0.0011 2.4E-08 69.5 13.8 97 61-225 159-256 (441)
281 PRK10262 thioredoxin reductase 97.6 0.0012 2.6E-08 66.1 13.4 99 61-223 147-248 (321)
282 TIGR03452 mycothione_red mycot 97.5 0.00095 2E-08 70.2 13.0 31 60-92 2-32 (452)
283 COG2509 Uncharacterized FAD-de 97.5 0.00035 7.5E-09 70.3 8.9 56 163-223 174-230 (486)
284 COG0562 Glf UDP-galactopyranos 97.5 0.00012 2.6E-09 70.2 5.4 36 61-96 2-37 (374)
285 PRK05329 anaerobic glycerol-3- 97.5 0.00011 2.3E-09 75.9 5.5 34 60-93 2-35 (422)
286 TIGR01292 TRX_reduct thioredox 97.5 0.001 2.2E-08 65.7 12.4 95 61-223 142-238 (300)
287 PRK07845 flavoprotein disulfid 97.5 0.0014 3.1E-08 69.2 14.0 99 61-226 178-277 (466)
288 PF01593 Amino_oxidase: Flavin 97.5 0.0012 2.5E-08 68.6 13.3 45 177-226 223-268 (450)
289 PRK07846 mycothione reductase; 97.5 0.0015 3.3E-08 68.6 14.0 97 61-225 167-264 (451)
290 TIGR03377 glycerol3P_GlpA glyc 97.5 0.0079 1.7E-07 64.4 19.6 73 158-231 124-199 (516)
291 PLN02852 ferredoxin-NADP+ redu 97.5 0.00015 3.2E-09 76.1 6.2 37 60-96 26-64 (491)
292 COG2907 Predicted NAD/FAD-bind 97.5 0.00084 1.8E-08 65.1 9.9 59 60-119 8-86 (447)
293 PLN02785 Protein HOTHEAD 97.5 0.00033 7.2E-09 75.6 8.1 36 58-94 53-88 (587)
294 PLN02328 lysine-specific histo 97.4 0.00014 3E-09 80.2 5.2 38 60-97 238-275 (808)
295 PLN02676 polyamine oxidase 97.4 0.00017 3.7E-09 76.3 5.8 38 60-97 26-64 (487)
296 PRK09853 putative selenate red 97.4 0.00017 3.7E-09 81.0 5.8 35 60-94 539-573 (1019)
297 PRK12769 putative oxidoreducta 97.4 0.00018 3.9E-09 79.2 5.7 36 60-95 327-362 (654)
298 PTZ00188 adrenodoxin reductase 97.4 0.00032 6.9E-09 72.7 7.0 37 60-96 39-76 (506)
299 TIGR01316 gltA glutamate synth 97.4 0.00019 4.1E-09 75.3 5.5 35 60-94 133-167 (449)
300 PRK06567 putative bifunctional 97.4 0.00016 3.6E-09 80.2 5.0 34 60-93 383-416 (1028)
301 PRK12775 putative trifunctiona 97.4 0.0002 4.3E-09 82.0 5.5 36 60-95 430-465 (1006)
302 PLN02529 lysine-specific histo 97.4 0.00025 5.4E-09 77.7 5.9 37 60-96 160-196 (738)
303 PRK14694 putative mercuric red 97.4 0.0027 5.8E-08 67.2 13.5 96 61-225 179-275 (468)
304 PRK14989 nitrite reductase sub 97.3 0.0018 4E-08 72.8 12.7 100 61-225 146-247 (847)
305 TIGR02374 nitri_red_nirB nitri 97.3 0.002 4.3E-08 72.4 12.9 99 61-225 141-240 (785)
306 TIGR03452 mycothione_red mycot 97.3 0.0062 1.3E-07 64.1 15.7 97 61-225 170-267 (452)
307 PRK12778 putative bifunctional 97.3 0.00027 5.9E-09 79.1 5.8 35 60-94 431-465 (752)
308 COG0446 HcaD Uncharacterized N 97.3 0.0023 4.9E-08 66.2 12.4 101 61-224 137-238 (415)
309 PRK09564 coenzyme A disulfide 97.3 0.0027 5.8E-08 66.7 12.7 97 61-224 150-247 (444)
310 PRK14727 putative mercuric red 97.3 0.0033 7.1E-08 66.7 13.4 97 61-226 189-286 (479)
311 PTZ00058 glutathione reductase 97.3 0.0033 7.2E-08 67.5 13.5 99 61-224 238-337 (561)
312 TIGR01318 gltD_gamma_fam gluta 97.3 0.00035 7.6E-09 73.7 5.9 36 60-95 141-176 (467)
313 TIGR03385 CoA_CoA_reduc CoA-di 97.3 0.0027 5.9E-08 66.3 12.6 96 61-224 138-234 (427)
314 TIGR02374 nitri_red_nirB nitri 97.3 0.0009 2E-08 75.1 9.4 33 63-95 1-36 (785)
315 PRK14989 nitrite reductase sub 97.3 0.0014 3.1E-08 73.7 10.7 35 61-95 4-42 (847)
316 TIGR01423 trypano_reduc trypan 97.3 0.004 8.7E-08 65.9 13.6 100 61-226 188-291 (486)
317 COG4529 Uncharacterized protei 97.3 0.0011 2.5E-08 67.5 8.9 34 61-94 2-38 (474)
318 TIGR01438 TGR thioredoxin and 97.3 0.0039 8.4E-08 66.1 13.4 98 62-225 182-281 (484)
319 KOG4716 Thioredoxin reductase 97.3 0.0013 2.8E-08 63.5 8.7 34 59-92 18-51 (503)
320 PRK13748 putative mercuric red 97.3 0.0061 1.3E-07 66.1 15.3 96 61-225 271-367 (561)
321 PTZ00052 thioredoxin reductase 97.2 0.0049 1.1E-07 65.6 13.4 97 62-226 184-281 (499)
322 PRK12814 putative NADPH-depend 97.2 0.00048 1E-08 75.7 5.7 36 60-95 193-228 (652)
323 COG2303 BetA Choline dehydroge 97.2 0.00037 8E-09 74.7 4.7 59 166-224 206-267 (542)
324 TIGR01317 GOGAT_sm_gam glutama 97.2 0.00054 1.2E-08 72.6 5.8 36 60-95 143-178 (485)
325 PRK05675 sdhA succinate dehydr 97.2 0.004 8.6E-08 67.4 12.5 63 162-225 126-191 (570)
326 PRK13512 coenzyme A disulfide 97.1 0.0041 9E-08 65.1 12.1 94 61-225 149-243 (438)
327 TIGR01316 gltA glutamate synth 97.1 0.0048 1E-07 64.8 12.5 33 61-93 273-305 (449)
328 PF13434 K_oxygenase: L-lysine 97.1 0.0025 5.3E-08 64.2 9.6 139 58-221 188-339 (341)
329 PLN02546 glutathione reductase 97.1 0.014 3E-07 62.8 15.5 100 61-226 253-353 (558)
330 PRK12770 putative glutamate sy 97.1 0.00093 2E-08 67.9 6.2 34 61-94 19-52 (352)
331 PRK12809 putative oxidoreducta 97.0 0.00077 1.7E-08 74.0 5.7 36 60-95 310-345 (639)
332 PRK12770 putative glutamate sy 97.0 0.0057 1.2E-07 62.1 11.3 33 61-93 173-206 (352)
333 KOG0685 Flavin-containing amin 97.0 0.0011 2.5E-08 67.0 5.9 42 60-101 21-63 (498)
334 COG0493 GltD NADPH-dependent g 97.0 0.00063 1.4E-08 70.7 4.3 57 61-117 124-188 (457)
335 PLN03000 amine oxidase 97.0 0.0011 2.5E-08 73.3 6.0 38 60-97 184-221 (881)
336 PRK12831 putative oxidoreducta 97.0 0.0084 1.8E-07 63.2 12.3 33 61-93 282-314 (464)
337 KOG0405 Pyridine nucleotide-di 96.9 0.018 3.9E-07 56.1 12.9 34 60-93 20-53 (478)
338 PTZ00153 lipoamide dehydrogena 96.9 0.015 3.3E-07 63.5 13.7 33 61-93 313-345 (659)
339 PTZ00318 NADH dehydrogenase-li 96.8 0.012 2.7E-07 61.2 12.4 91 62-223 175-280 (424)
340 PLN02976 amine oxidase 96.8 0.0017 3.7E-08 74.6 5.7 37 60-96 693-729 (1713)
341 TIGR03143 AhpF_homolog putativ 96.7 0.015 3.2E-07 62.8 12.2 33 61-93 144-176 (555)
342 PRK13984 putative oxidoreducta 96.7 0.0022 4.8E-08 70.1 5.7 37 59-95 282-318 (604)
343 COG1252 Ndh NADH dehydrogenase 96.7 0.0097 2.1E-07 60.5 9.5 51 164-223 211-262 (405)
344 TIGR01372 soxA sarcosine oxida 96.5 0.028 6.1E-07 64.9 13.2 94 61-225 318-413 (985)
345 KOG4254 Phytoene desaturase [C 96.5 0.0033 7.2E-08 63.1 4.8 63 163-229 265-327 (561)
346 KOG1238 Glucose dehydrogenase/ 96.4 0.011 2.5E-07 62.4 8.6 39 57-95 54-93 (623)
347 KOG1336 Monodehydroascorbate/f 96.4 0.033 7.1E-07 56.8 11.2 101 60-225 213-315 (478)
348 PRK12778 putative bifunctional 96.4 0.033 7.2E-07 62.5 12.7 33 61-93 571-604 (752)
349 KOG1800 Ferredoxin/adrenodoxin 96.3 0.0049 1.1E-07 60.7 4.9 37 60-96 20-58 (468)
350 PF06100 Strep_67kDa_ant: Stre 96.3 0.032 6.9E-07 57.6 10.7 36 61-96 3-42 (500)
351 TIGR03197 MnmC_Cterm tRNA U-34 96.2 0.21 4.6E-06 51.2 16.8 61 157-224 130-191 (381)
352 PRK12769 putative oxidoreducta 96.1 0.051 1.1E-06 60.0 12.1 33 61-93 469-502 (654)
353 PRK12779 putative bifunctional 96.0 0.072 1.6E-06 60.9 13.1 33 61-93 448-480 (944)
354 COG3486 IucD Lysine/ornithine 96.0 0.057 1.2E-06 54.1 10.4 148 58-225 3-159 (436)
355 KOG0399 Glutamate synthase [Am 96.0 0.01 2.2E-07 65.7 5.6 35 60-94 1785-1819(2142)
356 TIGR01318 gltD_gamma_fam gluta 95.9 0.087 1.9E-06 55.6 12.2 33 61-93 283-316 (467)
357 COG3634 AhpF Alkyl hydroperoxi 95.7 0.14 3E-06 50.1 11.4 89 54-209 348-438 (520)
358 COG0569 TrkA K+ transport syst 95.7 0.021 4.5E-07 53.9 5.9 58 62-119 2-66 (225)
359 PLN02852 ferredoxin-NADP+ redu 95.7 0.21 4.5E-06 52.7 13.8 61 163-223 267-354 (491)
360 COG0492 TrxB Thioredoxin reduc 95.7 0.14 3E-06 50.6 11.7 92 61-221 144-236 (305)
361 PF00996 GDI: GDP dissociation 95.6 0.014 3.1E-07 60.2 4.6 38 57-94 1-38 (438)
362 PF01210 NAD_Gly3P_dh_N: NAD-d 95.6 0.015 3.4E-07 51.5 4.2 32 62-93 1-32 (157)
363 TIGR03169 Nterm_to_SelD pyridi 95.5 0.15 3.2E-06 51.9 11.9 49 165-223 194-243 (364)
364 PRK12814 putative NADPH-depend 95.4 0.13 2.8E-06 56.8 11.7 34 60-93 323-357 (652)
365 PF02737 3HCDH_N: 3-hydroxyacy 95.3 0.024 5.2E-07 51.5 4.7 32 62-93 1-32 (180)
366 KOG3851 Sulfide:quinone oxidor 95.2 0.023 5E-07 54.8 4.2 36 58-93 37-74 (446)
367 PRK12775 putative trifunctiona 95.1 0.2 4.3E-06 57.9 12.3 32 61-92 572-604 (1006)
368 KOG2495 NADH-dehydrogenase (ub 95.0 0.085 1.8E-06 53.1 7.6 43 176-223 286-329 (491)
369 PRK01438 murD UDP-N-acetylmura 94.9 0.044 9.6E-07 58.1 6.2 33 61-93 17-49 (480)
370 COG1251 NirB NAD(P)H-nitrite r 94.9 0.067 1.4E-06 57.5 7.1 97 62-224 147-244 (793)
371 TIGR01816 sdhA_forward succina 94.9 0.12 2.5E-06 56.0 9.3 62 163-225 120-183 (565)
372 PRK13984 putative oxidoreducta 94.8 0.32 7E-06 53.2 12.7 29 61-89 419-453 (604)
373 PRK05329 anaerobic glycerol-3- 94.6 0.22 4.9E-06 51.5 10.2 56 164-222 261-317 (422)
374 PRK02705 murD UDP-N-acetylmura 94.6 0.038 8.3E-07 58.3 4.7 33 62-94 2-34 (459)
375 PF02558 ApbA: Ketopantoate re 94.5 0.058 1.3E-06 47.3 4.9 31 63-93 1-31 (151)
376 TIGR01317 GOGAT_sm_gam glutama 94.5 0.56 1.2E-05 49.8 13.1 33 61-93 284-317 (485)
377 TIGR01350 lipoamide_DH dihydro 94.4 0.055 1.2E-06 57.1 5.4 35 61-95 171-205 (461)
378 PF03721 UDPG_MGDP_dh_N: UDP-g 94.4 0.044 9.6E-07 49.9 3.9 32 62-93 2-33 (185)
379 PRK12809 putative oxidoreducta 94.2 0.42 9E-06 52.7 11.8 33 61-93 452-485 (639)
380 PRK06129 3-hydroxyacyl-CoA deh 94.2 0.053 1.2E-06 53.9 4.3 33 62-94 4-36 (308)
381 TIGR03315 Se_ygfK putative sel 94.2 0.7 1.5E-05 52.9 13.5 34 60-93 666-701 (1012)
382 KOG1336 Monodehydroascorbate/f 94.1 0.26 5.6E-06 50.5 9.0 33 60-92 74-108 (478)
383 PRK06370 mercuric reductase; V 94.0 0.079 1.7E-06 56.0 5.4 34 61-94 172-205 (463)
384 PRK07530 3-hydroxybutyryl-CoA 93.5 0.11 2.5E-06 51.1 5.3 33 61-93 5-37 (292)
385 PRK08293 3-hydroxybutyryl-CoA 93.5 0.09 1.9E-06 51.7 4.5 32 62-93 5-36 (287)
386 PRK06249 2-dehydropantoate 2-r 93.5 0.11 2.4E-06 51.7 5.2 33 61-93 6-38 (313)
387 PRK05708 2-dehydropantoate 2-r 93.5 0.11 2.3E-06 51.6 4.9 33 61-93 3-35 (305)
388 PRK07819 3-hydroxybutyryl-CoA 93.4 0.078 1.7E-06 52.0 3.9 33 62-94 7-39 (286)
389 KOG0404 Thioredoxin reductase 93.3 0.87 1.9E-05 42.0 9.9 100 61-228 158-259 (322)
390 TIGR02354 thiF_fam2 thiamine b 93.3 0.13 2.9E-06 47.4 4.9 34 60-93 21-55 (200)
391 PRK07066 3-hydroxybutyryl-CoA 93.3 0.11 2.3E-06 51.8 4.5 33 62-94 9-41 (321)
392 PRK09853 putative selenate red 93.2 1.2 2.6E-05 50.9 13.1 33 61-93 669-703 (1019)
393 PRK09260 3-hydroxybutyryl-CoA 93.0 0.13 2.7E-06 50.7 4.6 33 62-94 3-35 (288)
394 TIGR01470 cysG_Nterm siroheme 93.0 0.16 3.4E-06 47.2 5.0 32 61-92 10-41 (205)
395 PRK06522 2-dehydropantoate 2-r 93.0 0.12 2.6E-06 51.1 4.6 32 62-93 2-33 (304)
396 PF13478 XdhC_C: XdhC Rossmann 93.0 0.12 2.6E-06 44.5 3.9 32 63-94 1-32 (136)
397 PF01262 AlaDh_PNT_C: Alanine 93.0 0.16 3.5E-06 45.5 4.9 34 60-93 20-53 (168)
398 PRK06035 3-hydroxyacyl-CoA deh 92.9 0.12 2.6E-06 50.9 4.3 32 62-93 5-36 (291)
399 PF13241 NAD_binding_7: Putati 92.9 0.11 2.4E-06 42.4 3.3 33 60-92 7-39 (103)
400 PRK06719 precorrin-2 dehydroge 92.8 0.16 3.5E-06 44.9 4.6 31 61-91 14-44 (157)
401 PRK14106 murD UDP-N-acetylmura 92.8 0.15 3.2E-06 53.7 5.2 33 61-93 6-38 (450)
402 PF02254 TrkA_N: TrkA-N domain 92.8 0.2 4.2E-06 41.6 4.9 32 63-94 1-32 (116)
403 PRK12921 2-dehydropantoate 2-r 92.8 0.14 3E-06 50.7 4.6 30 62-91 2-31 (305)
404 TIGR03467 HpnE squalene-associ 92.7 4.1 9E-05 42.0 15.8 53 166-223 201-254 (419)
405 PF13738 Pyr_redox_3: Pyridine 92.5 0.16 3.4E-06 46.8 4.3 34 60-93 167-200 (203)
406 PRK05808 3-hydroxybutyryl-CoA 92.4 0.15 3.2E-06 50.0 4.2 33 62-94 5-37 (282)
407 PF01488 Shikimate_DH: Shikima 92.4 0.26 5.6E-06 42.4 5.2 34 60-93 12-46 (135)
408 PRK09424 pntA NAD(P) transhydr 92.2 0.16 3.4E-06 53.7 4.4 34 60-93 165-198 (509)
409 PRK15116 sulfur acceptor prote 92.2 0.23 5E-06 47.9 5.2 34 60-93 30-64 (268)
410 cd05292 LDH_2 A subgroup of L- 92.2 0.2 4.4E-06 49.7 4.9 33 62-94 2-36 (308)
411 TIGR00518 alaDH alanine dehydr 92.1 0.22 4.7E-06 50.8 5.1 33 61-93 168-200 (370)
412 PF00899 ThiF: ThiF family; I 92.1 0.21 4.6E-06 42.9 4.4 34 61-94 3-37 (135)
413 cd00401 AdoHcyase S-adenosyl-L 92.0 0.2 4.3E-06 51.5 4.7 34 60-93 202-235 (413)
414 PRK10669 putative cation:proto 92.0 0.43 9.4E-06 51.7 7.6 35 60-94 417-451 (558)
415 PRK06718 precorrin-2 dehydroge 92.0 0.26 5.7E-06 45.6 5.1 32 61-92 11-42 (202)
416 PRK14618 NAD(P)H-dependent gly 91.8 0.26 5.7E-06 49.4 5.3 33 61-93 5-37 (328)
417 KOG2495 NADH-dehydrogenase (ub 91.8 2.3 5.1E-05 43.2 11.6 117 58-225 53-172 (491)
418 PRK06130 3-hydroxybutyryl-CoA 91.7 0.28 6E-06 48.8 5.3 33 61-93 5-37 (311)
419 PRK12475 thiamine/molybdopteri 91.7 0.26 5.6E-06 49.5 5.0 34 60-93 24-58 (338)
420 PRK08229 2-dehydropantoate 2-r 91.7 0.22 4.9E-06 50.2 4.7 32 61-92 3-34 (341)
421 PRK11064 wecC UDP-N-acetyl-D-m 91.5 0.22 4.7E-06 51.7 4.4 34 61-94 4-37 (415)
422 PRK14620 NAD(P)H-dependent gly 91.4 0.27 5.9E-06 49.3 4.8 32 62-93 2-33 (326)
423 TIGR02356 adenyl_thiF thiazole 91.3 0.34 7.4E-06 44.8 5.1 34 60-93 21-55 (202)
424 TIGR01763 MalateDH_bact malate 91.2 0.33 7.1E-06 48.1 5.2 33 61-93 2-35 (305)
425 PTZ00082 L-lactate dehydrogena 91.2 0.37 8E-06 48.1 5.5 35 60-94 6-41 (321)
426 PRK07688 thiamine/molybdopteri 91.2 0.33 7.1E-06 48.8 5.2 34 60-93 24-58 (339)
427 PRK04148 hypothetical protein; 91.1 0.23 5E-06 42.3 3.4 32 61-93 18-49 (134)
428 COG1004 Ugd Predicted UDP-gluc 91.1 0.27 5.9E-06 49.3 4.4 33 62-94 2-34 (414)
429 PLN02545 3-hydroxybutyryl-CoA 91.0 0.36 7.8E-06 47.6 5.3 32 62-93 6-37 (295)
430 PF00056 Ldh_1_N: lactate/mala 91.0 0.43 9.4E-06 41.3 5.1 32 62-93 2-36 (141)
431 cd01080 NAD_bind_m-THF_DH_Cycl 91.0 0.4 8.7E-06 42.9 5.0 33 60-92 44-77 (168)
432 cd01487 E1_ThiF_like E1_ThiF_l 90.8 0.38 8.3E-06 43.4 4.8 32 62-93 1-33 (174)
433 TIGR02964 xanthine_xdhC xanthi 90.8 0.42 9.2E-06 45.6 5.3 36 59-94 99-134 (246)
434 TIGR02355 moeB molybdopterin s 90.7 0.4 8.6E-06 45.7 5.0 34 60-93 24-58 (240)
435 PRK14619 NAD(P)H-dependent gly 90.7 0.4 8.8E-06 47.6 5.3 33 61-93 5-37 (308)
436 KOG1346 Programmed cell death 90.5 0.92 2E-05 45.7 7.3 50 169-224 400-450 (659)
437 TIGR03026 NDP-sugDHase nucleot 90.5 0.27 5.9E-06 51.0 4.0 33 62-94 2-34 (411)
438 PRK08644 thiamine biosynthesis 90.4 0.44 9.6E-06 44.4 5.0 34 60-93 28-62 (212)
439 PRK06567 putative bifunctional 90.2 1.2 2.6E-05 50.5 8.8 32 61-92 551-585 (1028)
440 COG5044 MRS6 RAB proteins gera 90.0 0.5 1.1E-05 46.8 5.0 36 60-95 6-41 (434)
441 PRK07531 bifunctional 3-hydrox 90.0 0.42 9.1E-06 50.8 5.0 33 62-94 6-38 (495)
442 cd01483 E1_enzyme_family Super 89.9 0.55 1.2E-05 40.7 4.9 32 62-93 1-33 (143)
443 KOG2304 3-hydroxyacyl-CoA dehy 89.9 0.38 8.3E-06 44.3 3.8 35 60-94 11-45 (298)
444 PRK00094 gpsA NAD(P)H-dependen 89.8 0.46 9.9E-06 47.5 4.9 32 62-93 3-34 (325)
445 PRK12549 shikimate 5-dehydroge 89.8 0.44 9.6E-06 46.7 4.7 33 61-93 128-161 (284)
446 PRK07417 arogenate dehydrogena 89.8 0.42 9.1E-06 46.7 4.5 32 62-93 2-33 (279)
447 PRK05690 molybdopterin biosynt 89.8 0.51 1.1E-05 45.1 5.0 34 60-93 32-66 (245)
448 PRK06223 malate dehydrogenase; 89.8 0.5 1.1E-05 46.9 5.1 34 61-94 3-37 (307)
449 PRK00066 ldh L-lactate dehydro 89.7 0.62 1.3E-05 46.3 5.7 34 60-93 6-41 (315)
450 PRK08328 hypothetical protein; 89.7 0.54 1.2E-05 44.5 5.0 34 60-93 27-61 (231)
451 TIGR00936 ahcY adenosylhomocys 89.6 0.47 1E-05 48.7 4.7 35 60-94 195-229 (406)
452 PF00743 FMO-like: Flavin-bind 89.3 1.6 3.4E-05 46.9 8.7 33 61-93 184-216 (531)
453 cd05311 NAD_bind_2_malic_enz N 89.1 0.58 1.3E-05 44.1 4.7 33 61-93 26-61 (226)
454 cd00757 ThiF_MoeB_HesA_family 89.1 0.63 1.4E-05 44.0 5.0 34 60-93 21-55 (228)
455 cd05291 HicDH_like L-2-hydroxy 89.0 0.57 1.2E-05 46.5 4.9 33 62-94 2-36 (306)
456 PRK11749 dihydropyrimidine deh 89.0 0.53 1.1E-05 49.6 4.8 34 60-93 273-307 (457)
457 cd01339 LDH-like_MDH L-lactate 89.0 0.52 1.1E-05 46.6 4.5 31 63-93 1-32 (300)
458 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.0 0.61 1.3E-05 49.6 5.2 34 61-94 6-39 (503)
459 TIGR00561 pntA NAD(P) transhyd 88.9 0.56 1.2E-05 49.5 4.8 34 60-93 164-197 (511)
460 COG1063 Tdh Threonine dehydrog 88.9 0.51 1.1E-05 47.8 4.4 32 62-93 171-203 (350)
461 cd05293 LDH_1 A subgroup of L- 88.8 0.73 1.6E-05 45.8 5.4 34 60-93 3-38 (312)
462 TIGR03736 PRTRC_ThiF PRTRC sys 88.7 0.66 1.4E-05 44.1 4.8 34 60-93 11-55 (244)
463 PRK03659 glutathione-regulated 88.6 1.6 3.5E-05 47.7 8.3 34 60-93 400-433 (601)
464 KOG1439 RAB proteins geranylge 88.5 0.29 6.3E-06 49.0 2.2 38 58-95 2-39 (440)
465 TIGR01915 npdG NADPH-dependent 88.5 0.62 1.3E-05 43.7 4.5 32 62-93 2-34 (219)
466 PF03446 NAD_binding_2: NAD bi 88.5 0.75 1.6E-05 40.9 4.8 33 61-93 2-34 (163)
467 cd00755 YgdL_like Family of ac 88.3 0.77 1.7E-05 43.4 4.9 34 60-93 11-45 (231)
468 PRK08306 dipicolinate synthase 88.3 0.76 1.7E-05 45.3 5.1 34 60-93 152-185 (296)
469 COG1748 LYS9 Saccharopine dehy 88.3 0.65 1.4E-05 47.1 4.6 34 61-94 2-36 (389)
470 PTZ00117 malate dehydrogenase; 88.2 0.81 1.7E-05 45.7 5.3 35 60-94 5-40 (319)
471 PRK08223 hypothetical protein; 88.2 0.75 1.6E-05 44.7 4.9 34 60-93 27-61 (287)
472 PRK02472 murD UDP-N-acetylmura 88.2 0.62 1.3E-05 48.9 4.8 32 62-93 7-38 (447)
473 PRK08268 3-hydroxy-acyl-CoA de 88.2 0.62 1.3E-05 49.6 4.7 33 62-94 9-41 (507)
474 PRK05476 S-adenosyl-L-homocyst 88.2 0.67 1.4E-05 47.9 4.8 35 60-94 212-246 (425)
475 COG0446 HcaD Uncharacterized N 88.2 2.2 4.8E-05 43.8 8.9 32 63-94 1-34 (415)
476 COG0686 Ald Alanine dehydrogen 88.2 0.46 1E-05 46.0 3.3 34 60-93 168-201 (371)
477 PRK15057 UDP-glucose 6-dehydro 88.1 0.63 1.4E-05 47.8 4.6 32 62-94 2-33 (388)
478 PLN02353 probable UDP-glucose 88.1 0.63 1.4E-05 49.0 4.7 34 61-94 2-37 (473)
479 PRK11730 fadB multifunctional 88.1 0.58 1.3E-05 52.1 4.6 33 62-94 315-347 (715)
480 PRK10537 voltage-gated potassi 88.0 1.1 2.5E-05 45.9 6.3 32 61-92 241-272 (393)
481 TIGR02437 FadB fatty oxidation 88.0 0.6 1.3E-05 51.9 4.6 33 62-94 315-347 (714)
482 cd01485 E1-1_like Ubiquitin ac 87.9 0.84 1.8E-05 42.1 4.9 34 60-93 19-53 (198)
483 PF00670 AdoHcyase_NAD: S-aden 87.8 0.7 1.5E-05 40.8 4.0 33 61-93 24-56 (162)
484 PRK03369 murD UDP-N-acetylmura 87.8 0.66 1.4E-05 49.3 4.7 32 61-92 13-44 (488)
485 cd01078 NAD_bind_H4MPT_DH NADP 87.8 0.9 2E-05 41.6 5.0 32 61-92 29-61 (194)
486 PRK09496 trkA potassium transp 87.7 0.62 1.3E-05 49.0 4.4 33 62-94 2-34 (453)
487 KOG4405 GDP dissociation inhib 87.5 0.57 1.2E-05 46.9 3.6 41 57-97 5-45 (547)
488 cd01492 Aos1_SUMO Ubiquitin ac 87.5 0.9 1.9E-05 41.8 4.8 34 60-93 21-55 (197)
489 PRK04308 murD UDP-N-acetylmura 87.5 0.8 1.7E-05 48.1 5.1 34 61-94 6-39 (445)
490 cd01075 NAD_bind_Leu_Phe_Val_D 87.5 1.2 2.6E-05 41.1 5.6 32 61-92 29-60 (200)
491 KOG2755 Oxidoreductase [Genera 87.2 0.49 1.1E-05 44.7 2.8 31 63-93 2-34 (334)
492 PRK01710 murD UDP-N-acetylmura 87.1 0.77 1.7E-05 48.4 4.7 32 62-93 16-47 (458)
493 COG1893 ApbA Ketopantoate redu 87.0 0.75 1.6E-05 45.5 4.2 32 62-93 2-33 (307)
494 PRK05600 thiamine biosynthesis 86.8 1 2.2E-05 45.8 5.2 34 60-93 41-75 (370)
495 PF10727 Rossmann-like: Rossma 86.7 0.46 9.9E-06 40.3 2.2 33 60-92 10-42 (127)
496 TIGR01505 tartro_sem_red 2-hyd 86.7 0.76 1.6E-05 45.2 4.1 32 62-93 1-32 (291)
497 TIGR02853 spore_dpaA dipicolin 86.6 0.95 2.1E-05 44.4 4.6 33 61-93 152-184 (287)
498 PRK12548 shikimate 5-dehydroge 86.4 1 2.2E-05 44.3 4.7 33 61-93 127-160 (289)
499 TIGR02441 fa_ox_alpha_mit fatt 86.3 0.81 1.8E-05 51.1 4.4 33 62-94 337-369 (737)
500 cd05191 NAD_bind_amino_acid_DH 86.1 1.9 4E-05 33.7 5.3 31 61-91 24-55 (86)
No 1
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.6e-94 Score=677.49 Aligned_cols=469 Identities=70% Similarity=1.161 Sum_probs=455.4
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEE
Q 009785 55 GECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 134 (526)
Q Consensus 55 ~~~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 134 (526)
......+||||||||++|.++|+.|+|.|.+|+|+||+..+++|..|+.+||+|...|+++|++|+++.++++...|+.+
T Consensus 40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~i 119 (509)
T KOG1298|consen 40 ARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAI 119 (509)
T ss_pred hccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEE
Confidence 33455799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCe
Q 009785 135 FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPL 214 (526)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~ 214 (526)
+.+|+...+.||..++...+.|+.+|+++|.+.|++.+...|||++.+|+|.++.++++.|.||+++++.|++.+..|.+
T Consensus 120 fk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApL 199 (509)
T KOG1298|consen 120 FKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPL 199 (509)
T ss_pred EeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeecCCccccccccCCCCC-CccceeEEEEeccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCCCCCCch
Q 009785 215 TIVCDGCFSNLRRSLCNPKVD-VPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNG 293 (526)
Q Consensus 215 vV~ADG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 293 (526)
.|.|||++|++||.+..+... ..++++|++..+++++.++++|++++++.++.+||++..++|+++++++++.|+..+.
T Consensus 200 TvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~g 279 (509)
T KOG1298|consen 200 TVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANG 279 (509)
T ss_pred EEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccch
Confidence 999999999999999875544 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHH
Q 009785 294 EMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNL 373 (526)
Q Consensus 294 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~ 373 (526)
++..++.+.+.|++|+.+++.|.++++.+.++.+|+..+++....+.+++|+|||.++.||++|.||+.++.|+..|.++
T Consensus 280 em~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~l 359 (509)
T KOG1298|consen 280 EMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRL 359 (509)
T ss_pred hHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHhcCCCCcchhhhhhcCCCC
Q 009785 374 LRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNP 453 (526)
Q Consensus 374 L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~~g~~~ 453 (526)
|....+..+.+.+.+.+++|+++|||....++.++.++|++|.+.+|+.++++|++||+|+++||.|.++|+.+++|++|
T Consensus 360 l~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP 439 (509)
T KOG1298|consen 360 LKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNP 439 (509)
T ss_pred hccccccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999779999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCChHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccCccccccccCC
Q 009785 454 RPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAYYYQAP 523 (526)
Q Consensus 454 ~p~~~~~h~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (526)
+|.++..|||+|++|+++..+.++|.|.++|++.+++..|+.||+|+|++|+++|||||+++|||||++|
T Consensus 440 ~Pl~Lv~HffAValy~i~~ll~p~PsP~riw~s~~i~~~A~~vi~P~i~aEgv~qm~fp~~~~a~~~~~~ 509 (509)
T KOG1298|consen 440 RPLSLVLHFFAVALYGIYRLLSPFPSPRRIWESLRILSLASSVIFPIIKAEGVSQMLFPANAAAYYRSYP 509 (509)
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhheeeecccchHhhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=6.9e-80 Score=647.37 Aligned_cols=507 Identities=49% Similarity=0.832 Sum_probs=428.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCCCCCccCCCCCCCCcEEEECCCHHHHHHHHHHHhCC
Q 009785 4 QYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPTTALNGECPFDADVIVVGAGVAGAALANTLAKDG 83 (526)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGaG~aGl~~A~~La~~G 83 (526)
++.|++|+++|.+++.++... +.+++ ..+.... .........+||+|||||++|+++|+.|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~~~~~~~---~~~~~~~~~~DViIVGAG~aGlalA~aLa~~G 66 (514)
T PLN02985 2 THVCLWTLLAFVLTWTVFYVT---------NRKKK---ATELADA---VAEERKDGATDVIIVGAGVGGSALAYALAKDG 66 (514)
T ss_pred cchHHHHHHHHHHHHHHHHHh---------hhhhh---hcchhhh---hcccCcCCCceEEEECCCHHHHHHHHHHHHcC
Confidence 467888888888888887642 11111 1111111 11122344689999999999999999999999
Q ss_pred CeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCeeeeecCCCcC--CCCCcccceeec
Q 009785 84 RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHN 161 (526)
Q Consensus 84 ~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 161 (526)
++|+|+||++..+++..|+.++|++.+.|+++|+++.+......+..++.++.+++.....++... ......++.++|
T Consensus 67 ~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r 146 (514)
T PLN02985 67 RRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHN 146 (514)
T ss_pred CeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCEEEEEeCCCCCcCCCcccceeeeec
Confidence 999999999777778889999999999999999999988876667778888777765555555322 222345678999
Q ss_pred hHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccccccccCCCCCCcccee
Q 009785 162 GRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFV 241 (526)
Q Consensus 162 ~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~ 241 (526)
.+|.+.|++.+.+.+++++.+++++++.++++.+.+|++.+.+|++.+++||+||+|||++|++|++++.+.....+.+.
T Consensus 147 ~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~ 226 (514)
T PLN02985 147 GRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQV 226 (514)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeE
Confidence 99999999999988899999889988887777777888887788877788999999999999999999876544445556
Q ss_pred EEEEeccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcC
Q 009785 242 GLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDG 321 (526)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 321 (526)
+++..+...+.++..++++++++++++||++++++++++.++.+..++.+..++.+++.+...|.+|+.+.+.+...++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~ 306 (514)
T PLN02985 227 GYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDE 306 (514)
T ss_pred EEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhccc
Confidence 66555555666777888999999999999999999999888766666666778888888877788888888887765544
Q ss_pred C-CeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcch
Q 009785 322 G-NIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV 400 (526)
Q Consensus 322 ~-~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 400 (526)
. .+..+++...+...+..+|++|+|||||+++|++|||||+|++||..|++.|....+..+..++.++|++|+++|+++
T Consensus 307 ~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r 386 (514)
T PLN02985 307 GAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM 386 (514)
T ss_pred ccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc
Confidence 3 578888887777778889999999999999999999999999999999999987655456677889999999999999
Q ss_pred hHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHhcCCCCcchhhhhhcCCCCCCchhHHHHHHHHHHHHhhhcccCCCh
Q 009785 401 ASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSP 480 (526)
Q Consensus 401 ~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~~g~~~~p~~~~~h~~~~~l~~~~~~l~~~~~~ 480 (526)
++.++.+|+++|++|...+++.++.||++||+|+++||.|.++|+.++||+.|+|..|+.|||+|++|+++.++...+.|
T Consensus 387 ~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~~~p~~l~~h~~~v~~~~~~~~~~~~~~~ 466 (514)
T PLN02985 387 SATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSLIYHLCAITLSSIGHLLSPFPSP 466 (514)
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCCCCcHHHHHHHHHHHHHHHHHHhcccCCh
Confidence 99999999999999976558889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccCccccccccCCCC
Q 009785 481 YRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAYYYQAPPS 525 (526)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (526)
.++|++++++++||.||+|+||+|++++||||.++|+||+++|+.
T Consensus 467 ~~~~~~~~~~~~a~~~~~p~~~~e~~~~~~~~~~~~~~~~~~~~~ 511 (514)
T PLN02985 467 LRIWHSLRLFGLALKMLVPHLKAEGVSQMLFPANAAAYRKSYMAA 511 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhccccccccccccCCCcc
Confidence 999999999999999999999999999999999999999999975
No 3
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=1.8e-67 Score=555.30 Aligned_cols=442 Identities=43% Similarity=0.711 Sum_probs=367.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC-
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL-SEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD- 137 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~-~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~- 137 (526)
++||+||||||+|+++|+.|+++|++|+|+||++ ..+++..|+.++|++.++|+++|+++.+...... ..++.+++.
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~-~~~~~v~~~~ 111 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMP-CFGYVVFDHK 111 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcc-eeeeEEEECC
Confidence 5899999999999999999999999999999986 3455778899999999999999999988876554 667777664
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHH--HcCCCeEEEeceEEEEEeeCC----eEEEEEEEeCCC------
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKA--ASLPNVRLEQGTVTSLLEEKG----TIKGVQYKTKAG------ 205 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a--~~~~~v~i~~~~v~~l~~~~~----~v~gv~v~~~~G------ 205 (526)
++.....++ ....+..++++++++.|++.+ ...+++++.+++|+++.++++ .+.+|++...++
T Consensus 112 G~~~~i~~~-----~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~ 186 (567)
T PTZ00367 112 GKQVKLPYG-----AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPEN 186 (567)
T ss_pred CCEEEecCC-----CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCccccccc
Confidence 433333332 233467789999999999988 445789998888998876544 377788776542
Q ss_pred ---------------cEEEEEcCeEEEeecCCccccccccCCC--CCCccceeEEEEeccCCCCCCccEEEecCCCcEEE
Q 009785 206 ---------------EELTAYAPLTIVCDGCFSNLRRSLCNPK--VDVPSCFVGLVLENCNLPFENHGHVVLADPSPILF 268 (526)
Q Consensus 206 ---------------~~~~i~a~~vV~ADG~~S~vR~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (526)
+..+++||+||+|||++|++|++++... ....+.+.+.+..+..++.++.+++++++++++++
T Consensus 187 ~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~ 266 (567)
T PTZ00367 187 PFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILS 266 (567)
T ss_pred ccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEE
Confidence 1246789999999999999999997643 23445677777766778888888899999999999
Q ss_pred EecCCCcEEEEEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcC-CCeEeccCCCCCCCCCCCCcEEEEcc
Q 009785 269 YPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDG-GNIKTMPNRSMPAAPYPTPGALLMGD 347 (526)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~~~~~~~~grv~LiGD 347 (526)
||+++++.++++.++....++ .++..+++.+...|.+++++.+.+...+.. ..+..++...+++.+|..+|++|+||
T Consensus 267 yPl~~~~~r~lv~~~~~~~p~--~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~~~~~~gvvLIGD 344 (567)
T PTZ00367 267 YRLDDNELRVLVDYNKPTLPS--LEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIGD 344 (567)
T ss_pred EEcCCCeEEEEEEecCCcCCC--hHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCccCCCCCEEEEEc
Confidence 999999988888776443222 235567777777788888888888666543 46788888888888888999999999
Q ss_pred CCCcCCCCCchhHHHHHHHHHHHHHHHhhhc-----CCCChHHHHHHHH----HHHHHhcchhHHHHHHHHHHHHhHccC
Q 009785 348 AFNMRHPLTGGGMTVALSDIVILRNLLRHLS-----NLNDAPALCNYLE----SFYTLRKPVASTINTLAGALYQVFSAS 418 (526)
Q Consensus 348 AAh~~~P~~G~G~n~al~Da~~La~~L~~~~-----~~~~~~~~~~~L~----~Y~~~R~~~~~~~~~~a~~~~~~~~~~ 418 (526)
|||++||++|||||+||+||..|+++|.... +.++..+++++|+ +|+++|++++..++.+++.++++|+.
T Consensus 345 AAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~- 423 (567)
T PTZ00367 345 HANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS- 423 (567)
T ss_pred ccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh-
Confidence 9999999999999999999999999998643 2233345677788 99999999999999999999999976
Q ss_pred CchHHHHHHHHHHHHHhcCCCCcchhhhhhcCCCCCCchhHHHHHHHHHHHHhhhccc----------------------
Q 009785 419 PDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLP---------------------- 476 (526)
Q Consensus 419 ~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~~g~~~~p~~~~~h~~~~~l~~~~~~l~~---------------------- 476 (526)
..+|++||+|+++||.|.++|+.+++|+.|+|..++.|||+|++|+++.++.+
T Consensus 424 -----~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~p~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (567)
T PTZ00367 424 -----PALRDACLDYFSLGGECVTGPMSLLSGLDPSPGGLLFHYFSVALYGVLNLIMETGAYSIFGKQLSSFEKLTNVAS 498 (567)
T ss_pred -----HHHHHHHHHHHhcCCccccccHHHHcCCCCCcHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 47999999999999999999999999999999999999999999999998887
Q ss_pred -CCChHHHHHHHHHHHhhhhhhhhhhhhh--hhhhhcccCcc
Q 009785 477 -FPSPYRFWIGARIITSASGIIFPIMKAE--GLRQMFFPATV 515 (526)
Q Consensus 477 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 515 (526)
++.|.++|++++++++||.||+|++|+| .+.++++|+..
T Consensus 499 ~~~~~~~~~~~~~~~~~a~~~~~p~~~~e~~~~~~~~~~~~~ 540 (567)
T PTZ00367 499 FFVDPERIKHALYLLGAATTIAAPLAKSEFVSLWRFIDPTSI 540 (567)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 4779999999999999999999999999 56888898764
No 4
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=100.00 E-value=9.1e-51 Score=380.19 Aligned_cols=272 Identities=57% Similarity=0.978 Sum_probs=259.9
Q ss_pred cCeEEEeecCCccccccccCCCCCCccceeEEEEeccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCCCCCC
Q 009785 212 APLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSIS 291 (526)
Q Consensus 212 a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 291 (526)
|+++|+|||++|++||.+..+.+...++++|+.+.++++|.++++++++++++++++||++.+++|++++++.++.|+.+
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~~~ 81 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPSVS 81 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCCcc
Confidence 78999999999999999998888888999999999999999999999999999999999999999999999988788888
Q ss_pred chHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHH
Q 009785 292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (526)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La 371 (526)
.+++++++++.+.|++|+++++.+.++++.++++.+|+..+++......+++++|||+|++||++|+||+.|+.|+..|+
T Consensus 82 ~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~ 161 (276)
T PF08491_consen 82 NGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLR 161 (276)
T ss_pred chHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHhcCCCCcchhhhhhcCC
Q 009785 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGL 451 (526)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~~g~ 451 (526)
+.|....+..+...+.+++++|+++|++....++.+|+++|.+|.++ ++....||++||+|+++||.|.++|+.+++|+
T Consensus 162 ~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~-~~~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl 240 (276)
T PF08491_consen 162 DLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAAD-DDYLKALRQGCFKYFQLGGECVSGPVALLSGL 240 (276)
T ss_pred HHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCCCCcchHHHhccC
Confidence 99998888888999999999999999999999999999999999988 77788999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCC---ChHHHH
Q 009785 452 NPRPLILVFHFFAVAIYGVGRILLPFP---SPYRFW 484 (526)
Q Consensus 452 ~~~p~~~~~h~~~~~l~~~~~~l~~~~---~~~~~~ 484 (526)
.|+|..++.|||+|++|+++.++.+.| .|.++|
T Consensus 241 ~p~P~~L~~Hff~Va~~~i~~~~~~~p~~~~P~~~~ 276 (276)
T PF08491_consen 241 NPRPLVLFYHFFAVAFYAIYLNLKPRPWYGFPLALW 276 (276)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcccCCcccCChhhC
Confidence 999999999999999999999999877 666543
No 5
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-48 Score=416.46 Aligned_cols=420 Identities=21% Similarity=0.249 Sum_probs=292.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceee--eeeEEE-
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRV--FGYALF- 135 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~--~~~~~~- 135 (526)
.++||+||||||+||++|+.|+++|++|+|+||.+.....+++..++++++++|+++|+.+.+.+...... .....+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~ 85 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT 85 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence 35899999999999999999999999999999998777777888999999999999999988876542210 111111
Q ss_pred -ECCeee-eecCCCc------------CCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEE
Q 009785 136 -KDGNRT-QISYPLE------------KFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQY 200 (526)
Q Consensus 136 -~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v 200 (526)
..+... ...++.. .+......+.++|..+++.|.+.+.+.+++++++++ |+++.++++++. +++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~ 164 (545)
T PRK06126 86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-ATV 164 (545)
T ss_pred cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-EEE
Confidence 122211 1111100 001112345688899999999999887789999985 999998877665 555
Q ss_pred Ee-CCCcEEEEEcCeEEEeecCCccccccccCCCCCCcc--ceeEEEEeccCC----CCCC-ccEEEecCCCcEEEEecC
Q 009785 201 KT-KAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPS--CFVGLVLENCNL----PFEN-HGHVVLADPSPILFYPIS 272 (526)
Q Consensus 201 ~~-~~G~~~~i~a~~vV~ADG~~S~vR~~l~~~~~~~~~--~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~p~~ 272 (526)
.+ .+|+..++++|+||+|||.+|.||+++++...+... ....+.+...++ +... ..++++.++....+++..
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 244 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAID 244 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEEC
Confidence 55 567767899999999999999999999986544332 222233322121 1111 223445555566667776
Q ss_pred CCcEEEEEE-eCC-CCCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCC
Q 009785 273 SNEVRCLVD-IPG-QKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFN 350 (526)
Q Consensus 273 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh 350 (526)
.+. .|.+. +.. +.....+.++..+.+++.+.+.++.++. ....|......+++|..|||+|+|||||
T Consensus 245 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------~~~~w~~~~~~a~~~~~gRv~L~GDAAH 313 (545)
T PRK06126 245 GRD-EWLFHQLRGGEDEFTIDDVDARAFVRRGVGEDIDYEVL----------SVVPWTGRRLVADSYRRGRVFLAGDAAH 313 (545)
T ss_pred CCC-eEEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCeEEE----------eecccchhheehhhhccCCEEEechhhc
Confidence 544 44443 332 2222345566777777765433322211 2234556667788999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccC--------CchH
Q 009785 351 MRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS--------PDEA 422 (526)
Q Consensus 351 ~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~--------~~~~ 422 (526)
.++|++|||||+||+||.+|+|+|+.+.+ +.+.+.+|++|+++|+|++..++..+..+...+... .++.
T Consensus 314 ~~~P~~GqG~N~gieDa~~La~~La~~~~---~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 390 (545)
T PRK06126 314 LFTPTGGYGMNTGIGDAVNLAWKLAAVLN---GWAGPALLDSYEAERRPIAARNTDYARRNADALGSFPVPPEIEDDGPA 390 (545)
T ss_pred cCCCCcCcccchhHHHHHHHHHHHHHHHc---CCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhcccccchhhccCChh
Confidence 99999999999999999999999997643 233478999999999999999999998877665421 1233
Q ss_pred HHHHHHHHHHHH-------------hcCCCCcchhhhhhcC------------CCCCCchhHHHHHH------HHHHHHh
Q 009785 423 RKEMRQACFDYL-------------SLGGIFSSGPVSLLSG------------LNPRPLILVFHFFA------VAIYGVG 471 (526)
Q Consensus 423 ~~~lr~~~~~~~-------------~~g~~~~~~~~~~~~g------------~~~~p~~~~~h~~~------~~l~~~~ 471 (526)
...+|+...+++ ++|++|.++++...++ ..++||.|+||.|+ +||+|.+
T Consensus 391 ~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~pG~r~ph~~l~~~~s~~dl~g~~ 470 (545)
T PRK06126 391 GDAARRKVGDALSEHARQEFNSPGITLGYRYDGSPIIVPDGTPPPPDDPGVYVPSACPGGRAPHAWLSDGRSLYDLFGPG 470 (545)
T ss_pred HHHHHHHHHHHHhhccccccccceeeecceecCCceecCCCCCCCCCcccccccCCCCCcCCCCeeecCCcchHHhcCCc
Confidence 344555544333 3789998888765332 24679999999998 9999999
Q ss_pred hhcccCCChHHHHHHHHHHHhh
Q 009785 472 RILLPFPSPYRFWIGARIITSA 493 (526)
Q Consensus 472 ~~l~~~~~~~~~~~~~~~~~~~ 493 (526)
|+|+++.....+..++.-....
T Consensus 471 f~Ll~~~~~~~~~~~~~~~~~~ 492 (545)
T PRK06126 471 FTLLRFGDAAVDVAPLEAAAAA 492 (545)
T ss_pred eEEEecCCCcHHHHHHHHHHHH
Confidence 9999977655555555444333
No 6
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=9.9e-46 Score=379.49 Aligned_cols=364 Identities=25% Similarity=0.316 Sum_probs=279.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD-LSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~-~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
.+||+||||||+||++|+.|+++|++|+|+||. .......++..++++++++|+++|+.+.+......+.....++.++
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 479999999999999999999999999999998 3444555889999999999999999766666555555555555555
Q ss_pred eeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEE
Q 009785 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (526)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ 217 (526)
. ....+..........++.++|..+.+.|.+.+.+.++++++.++ |+.+.++++.+. +++.. +|+ +++||+||+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~-dG~--~~~a~llVg 156 (387)
T COG0654 82 R-RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSF-DGE--TLDADLLVG 156 (387)
T ss_pred c-eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcC-CCc--EEecCEEEE
Confidence 3 23334433444456788999999999999999999889999985 999999887665 66655 787 678999999
Q ss_pred eecCCccccccccCCCCCC-ccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCC---CCCCCc
Q 009785 218 CDGCFSNLRRSLCNPKVDV-PSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPSISN 292 (526)
Q Consensus 218 ADG~~S~vR~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~ 292 (526)
|||.+|.||+.+++..... .+...+++.. ..+.++......++.+.+++.++|++++.....+..+... ...++.
T Consensus 157 ADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T COG0654 157 ADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD 236 (387)
T ss_pred CCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCH
Confidence 9999999999999433333 4444444443 3334666677778888889999999977667777665332 223344
Q ss_pred hHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHH
Q 009785 293 GEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRN 372 (526)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~ 372 (526)
+.....+.+.+....+ +...........+|.....+.+|..+||+|+|||||.+||++|||+|+||+||.+|++
T Consensus 237 ~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~ 310 (387)
T COG0654 237 EEFLRELQRRLGERDP------LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAE 310 (387)
T ss_pred HHHHHHHHHhcCcccc------cceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHH
Confidence 4443444443322111 1112233455678888888999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHhcCC
Q 009785 373 LLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGG 438 (526)
Q Consensus 373 ~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~ 438 (526)
+|.+....+. + +.+|+.|+++|++.+..++..+..+.+.|... .+....+|+..+.++....
T Consensus 311 ~L~~~~~~~~--~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~~~~~ 372 (387)
T COG0654 311 ALAAAPRPGA--D-AAALAAYEARRRPRAEAIQKLSRALGRLFSAD-GPFARFLRNLGLRLLDRLP 372 (387)
T ss_pred HHHHHhhcCc--c-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccC-CcHHHHHHHHHHHhhccCc
Confidence 9998643111 1 79999999999999999999999999999887 8888999999988875443
No 7
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=9.1e-46 Score=396.36 Aligned_cols=402 Identities=19% Similarity=0.169 Sum_probs=274.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
.++||+||||||+||++|+.|+++|++|+|+||++......++..++++++++|+++|+.+.+.+.... ......+..+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~-~~~~~~~~~~ 100 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVS-WNVGKVFLRD 100 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCce-eeceeEEeCC
Confidence 468999999999999999999999999999999987766677888999999999999999887664322 1222223222
Q ss_pred eeeeecCCCcC-C-CCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 139 NRTQISYPLEK-F-HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 139 ~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
.. ...+.... . ...+....++|..+++.|.+.+.+.+++++++++ ++++.++++.+. +++++.+|+ .++++|+|
T Consensus 101 ~~-~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~~~g~-~~i~ad~v 177 (547)
T PRK08132 101 EE-VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETPDGP-YTLEADWV 177 (547)
T ss_pred Ce-EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEECCCCc-EEEEeCEE
Confidence 21 11111111 0 1111233478889999999999988789998885 999988777554 555555554 46889999
Q ss_pred EEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEec----CCCcEEEEecCCCcEEEEEEeCCCCC--C
Q 009785 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQKV--P 288 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~--~ 288 (526)
|+|||.+|.+|+.++++..+.......++.. ..+.+.+.....++. ++..+++.+..++.+++.+....... .
T Consensus 178 VgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (547)
T PRK08132 178 IACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDADPEA 257 (547)
T ss_pred EECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCCchh
Confidence 9999999999999998665544322222221 111122223334443 22345555666655554443332111 1
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHH
Q 009785 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (526)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~ 368 (526)
..+.+++.+.+++.+.+..+ .+......|......+++|++|||+|+|||||.++|++|||||+||+||.
T Consensus 258 ~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~ 327 (547)
T PRK08132 258 EKKPENVIPRVRALLGEDVP----------FELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDAD 327 (547)
T ss_pred hcCHHHHHHHHHHHcCCCCC----------eeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHH
Confidence 12334444455544321100 01112234556667789999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHH---------------
Q 009785 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDY--------------- 433 (526)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~--------------- 433 (526)
+|+|+|+.+.. +.+.+++|++|++||+|++..++..+..+...+... ++....+|+..+..
T Consensus 328 ~LawkLa~vl~---g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 403 (547)
T PRK08132 328 NLAWKLALVLR---GRAPDSLLDSYASEREFAADENIRNSTRSTDFITPK-SPVSRLFRDAVLRLARDHPFARRLVNSGR 403 (547)
T ss_pred HHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CHHHHHHHHHHHhhhcccHHHHHHHhccc
Confidence 99999998653 234578999999999999999999888888877654 45555566654332
Q ss_pred HhcCCCCcchhhhhhcC----CCCCCchhHHHHHH---------HHHHHHhhhcccCC
Q 009785 434 LSLGGIFSSGPVSLLSG----LNPRPLILVFHFFA---------VAIYGVGRILLPFP 478 (526)
Q Consensus 434 ~~~g~~~~~~~~~~~~g----~~~~p~~~~~h~~~---------~~l~~~~~~l~~~~ 478 (526)
+..+..|.++++...++ ..++||.|+||.|+ .|++|.+|+|+.+.
T Consensus 404 ~~~~~~y~~~~~~~~~~~~~~~~~~pG~r~p~~~~~~~~~~~~l~dl~g~~f~ll~~~ 461 (547)
T PRK08132 404 LSVPAVYADSPLNTPDGDAFAGGPVPGAPAPDAPVRADGEPGWLLDLLGGGFTLLLFG 461 (547)
T ss_pred cccCcccCCCCCCCCcccccCCCCCCCCCCCCCcccCCCCceEHHHhcCCCEEEEEec
Confidence 23467788877653221 24679999999976 78999999998754
No 8
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.4e-45 Score=393.91 Aligned_cols=403 Identities=23% Similarity=0.211 Sum_probs=283.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
.++||+||||||+|+++|+.|+++|++|+|+||++.....+++..++++++++|+++|+.+.+.+.. .+..+..++...
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~~~~~~ 87 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHT-TPNHGMRFLDAK 87 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhc-ccCCceEEEcCC
Confidence 4589999999999999999999999999999999877777788899999999999999998876643 233445554332
Q ss_pred eeeeecCCCcC--CCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 139 NRTQISYPLEK--FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
......++... ....+....++|..+++.|++.+.+.++++++++ +|++++++++++. |++++.+|++.+++||+|
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ad~v 166 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARYV 166 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEEEEEE
Confidence 22222222111 0011223567899999999999988778999988 4999998887654 666555786678999999
Q ss_pred EEeecCCccccccccCCCCCCccceeEEEEe---ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCC-CCCCC-
Q 009785 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE---NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQ-KVPSI- 290 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~- 290 (526)
|+|||.+|.||+.+++...+.......+.+. ............++.+++++.++|.+++..+|.+.+... .....
T Consensus 167 VgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~ 246 (538)
T PRK06183 167 VGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEEQLA 246 (538)
T ss_pred EecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChhhcC
Confidence 9999999999999987654443322222221 111112223456677788999999988887887765422 11122
Q ss_pred CchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHH
Q 009785 291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL 370 (526)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~L 370 (526)
+.+.+.+++..+.. .+... +..+...+......+++|+.|||+|+|||||.++|++|||||+||+||.+|
T Consensus 247 ~~~~~~~~l~~~~~--~~~~~--------~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~L 316 (538)
T PRK06183 247 SPENVWRLLAPWGP--TPDDA--------ELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANL 316 (538)
T ss_pred CHHHHHHHHHhhCC--CCcce--------EEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHH
Confidence 23444444443210 01100 001223344445567899999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh---------------
Q 009785 371 RNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS--------------- 435 (526)
Q Consensus 371 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~--------------- 435 (526)
+|+|+.+.. +.+.+++|++|+++|+|++..++..+..+.+++... ++....+|+..+..+.
T Consensus 317 a~kLa~~~~---g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~ 392 (538)
T PRK06183 317 AWKLAAVLR---GRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT-DRLAAALRDAVLRALNYLPPLKRYVLEMRFK 392 (538)
T ss_pred HHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHhhhcCcchhhhhhhccCC
Confidence 999997643 234578999999999999999999999999998776 7888888997765432
Q ss_pred cCCCCcchhhhhhc-CCCCCCchhHHHHHH----------HHHHHHhhhcccC
Q 009785 436 LGGIFSSGPVSLLS-GLNPRPLILVFHFFA----------VAIYGVGRILLPF 477 (526)
Q Consensus 436 ~g~~~~~~~~~~~~-g~~~~p~~~~~h~~~----------~~l~~~~~~l~~~ 477 (526)
....|..+++.... .-.+.||.++|+.++ -++.|.+|+|+.+
T Consensus 393 ~~~~y~~~~~~~~~~~~~~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~ 445 (538)
T PRK06183 393 PMPRLTGGAVVREGEAKHSPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW 445 (538)
T ss_pred CCCcccccccccCcccCCCCcccCcCCCeeEcCCCCcccchhccCCceEEEEe
Confidence 22334444322111 123567888888744 3477888888864
No 9
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=2e-45 Score=379.26 Aligned_cols=362 Identities=20% Similarity=0.230 Sum_probs=253.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc------ccceeeCcchHHHHHHcCCcchhhcccceeeeeeE
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR------IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~------~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 133 (526)
++||+||||||+|+++|+.|+++|++|+|+||++.+... .++..++++++++|+++|+++.+......+..+..
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 589999999999999999999999999999998764321 24556899999999999999888764444555666
Q ss_pred EEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEc
Q 009785 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (526)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a 212 (526)
++.........+..........++.++|..+++.|.+.+.+.+++++++++ |++++++++. |++...+|+ +++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~---v~v~~~~g~--~i~a 157 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE---AFLTLKDGS--MLTA 157 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe---EEEEEcCCC--EEEe
Confidence 665432222223222222233467899999999999999988789999885 9999877764 445556675 4789
Q ss_pred CeEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCc-EEEEEEeCCCCC---
Q 009785 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQKV--- 287 (526)
Q Consensus 213 ~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~--- 287 (526)
|+||+|||.+|.||+.++++.....+....+... ..+.+.......++..++++.++|..++. .++.+..+.+..
T Consensus 158 ~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 237 (400)
T PRK08013 158 RLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQRM 237 (400)
T ss_pred eEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHHHHHH
Confidence 9999999999999999998765444333333322 22223333334455666788899997654 456665543211
Q ss_pred CCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHH
Q 009785 288 PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI 367 (526)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da 367 (526)
.....+++.+.+.... ++.+. ...-......++.....+++|..|||+|+|||||.++|++|||||+||+||
T Consensus 238 ~~~~~~~~~~~l~~~~----~~~l~----~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da 309 (400)
T PRK08013 238 QQAPEEEFNRALAIAF----DNRLG----LCELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDA 309 (400)
T ss_pred HcCCHHHHHHHHHHHH----hHhhC----ceEecCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHH
Confidence 1112222333222211 11100 000001122455565668899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
.+|+++|......+.......+|++|+++|++.+..++..+..+.++|... ++....+|+..+..+.
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~~~~R~~~l~~~~ 376 (400)
T PRK08013 310 AELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGN-NPAKKLLRDIGLKLAD 376 (400)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHh
Confidence 999999986532111111235899999999999999999999999999876 7788889998877654
No 10
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=4.7e-45 Score=377.47 Aligned_cols=364 Identities=21% Similarity=0.245 Sum_probs=261.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCC----CcccceeeCcchHHHHHHcCCcchhhcccceeeeeeE
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD-LSEP----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~-~~~~----~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 133 (526)
..+||+||||||+|+++|+.|+++|++|+|+|+. +... ...++..++++++++|+++|+++.+.+....+...+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 82 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME 82 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence 3589999999999999999999999999999996 3211 2346778999999999999999988765445556667
Q ss_pred EEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEc
Q 009785 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (526)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a 212 (526)
++.........++.........++.+++..+.+.|.+.+.+.++++++.+ +|+++.++++. +.+...+|+ +++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a 157 (405)
T PRK08850 83 VWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE---AWLTLDNGQ--ALTA 157 (405)
T ss_pred EEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe---EEEEECCCC--EEEe
Confidence 77654322333332222233346778899999999999988778999888 59999877664 445556776 4779
Q ss_pred CeEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCc-EEEEEEeCCCCC---
Q 009785 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQKV--- 287 (526)
Q Consensus 213 ~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~--- 287 (526)
|+||+|||.+|.+|+.++++.....+...++... ..+.+.....+.++++++++.++|+.++. .++.+..+.+..
T Consensus 158 ~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~ 237 (405)
T PRK08850 158 KLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEAL 237 (405)
T ss_pred CEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHHHH
Confidence 9999999999999999988654433333333322 22233334456677888899999998654 466666543211
Q ss_pred CCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHH
Q 009785 288 PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI 367 (526)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da 367 (526)
...+.++..+.+.+.+.+.+. .+ .. ......+|.....+.+|.++||+|+|||||.++|+.|||+|+||+||
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~-~~-----~~--~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da 309 (405)
T PRK08850 238 LAMSDEQFNKALTAEFDNRLG-LC-----EV--VGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDA 309 (405)
T ss_pred HcCCHHHHHHHHHHHHhhhhC-cE-----EE--cccccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHH
Confidence 122233333333332211110 00 00 11223466666667899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHhc
Q 009785 368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSL 436 (526)
Q Consensus 368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 436 (526)
.+|+|+|......+.....+.+|++|+++|++++..++..+..+.++|... ++....+|+..+..+..
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~~~~~~R~~~l~~~~~ 377 (405)
T PRK08850 310 ASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGS-NPAKKLVRGIGMSLAGQ 377 (405)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhh
Confidence 999999986542222223468999999999999999999999999999876 77888999988776654
No 11
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-45 Score=385.83 Aligned_cols=395 Identities=19% Similarity=0.181 Sum_probs=275.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCe
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 139 (526)
++||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+.+.+.+... +.....++....
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~-~~~~~~~~~~~~ 80 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGR-KLPSGHFAGLDT 80 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcc-cccceEEecccc
Confidence 4899999999999999999999999999999998877777899999999999999999988876432 222222221111
Q ss_pred eeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEe
Q 009785 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (526)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~A 218 (526)
...+.... ...+....++|..+++.|.+.+++. +++++.+ +++++.++++.+. +++.+.+|+ .+++||+||+|
T Consensus 81 --~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~-~~i~a~~vVgA 154 (493)
T PRK08244 81 --RLDFSALD-TSSNYTLFLPQAETEKVLEEHARSL-GVEIFRGAEVLAVRQDGDGVE-VVVRGPDGL-RTLTSSYVVGA 154 (493)
T ss_pred --cCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEcCCeEE-EEEEeCCcc-EEEEeCEEEEC
Confidence 11111101 1123345688999999999998887 7889888 4999988777654 566555663 46889999999
Q ss_pred ecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCC----CCCCCch
Q 009785 219 DGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK----VPSISNG 293 (526)
Q Consensus 219 DG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~ 293 (526)
||.+|.+|++++++..+....+.++... ....+.+.....++.+.++++++|++++..++.+..+... ....+.+
T Consensus 155 DG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (493)
T PRK08244 155 DGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLE 234 (493)
T ss_pred CCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHH
Confidence 9999999999988765555444444332 1111222234455677789999999988777766543211 1123455
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHH
Q 009785 294 EMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNL 373 (526)
Q Consensus 294 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~ 373 (526)
++.+.+.+.....+.. ........++.....+++|.+|||+|+|||||.++|++|||||+||+||.+|+|+
T Consensus 235 ~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~ 305 (493)
T PRK08244 235 ELKTSLIRICGTDFGL---------NDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWK 305 (493)
T ss_pred HHHHHHHHhhCCCCCc---------CCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHH
Confidence 5556555543322110 0112334566666778899999999999999999999999999999999999999
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHH--------------hcCCC
Q 009785 374 LRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYL--------------SLGGI 439 (526)
Q Consensus 374 L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~--------------~~g~~ 439 (526)
|+.+.+ +.+.+.+|++|+++|+|++..++..+..+..++.. ++....+|+.....+ .++..
T Consensus 306 La~~l~---g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~--~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (493)
T PRK08244 306 LAAAIK---GWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFDF--TRPGLALRSMLSDLLGFPEVNRYLAGQISALDVH 380 (493)
T ss_pred HHHHHc---CCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcC--CchhHHHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 997653 23346899999999999999999888888887753 244455555433221 24445
Q ss_pred CcchhhhhhcCCCCCCchhHHHHHH----------HHHHHHh-hhcccCC
Q 009785 440 FSSGPVSLLSGLNPRPLILVFHFFA----------VAIYGVG-RILLPFP 478 (526)
Q Consensus 440 ~~~~~~~~~~g~~~~p~~~~~h~~~----------~~l~~~~-~~l~~~~ 478 (526)
|..++. ....+.||.|+||.|+ .|+++.+ |+|+.+.
T Consensus 381 Y~~~~~---~~~~~~~G~r~p~~~~~~~~~~~~~l~~~~~~~~~~ll~~~ 427 (493)
T PRK08244 381 YEPDAE---MPPHPLNGKRLPDLELTLSDGESERLYSLLHKGTFLLLSFG 427 (493)
T ss_pred cCCCCc---cCCCCCCCCCCCCcceecCCCCceeHHHhhcCCeEEEEEec
Confidence 543221 1124678999999875 5666554 7777543
No 12
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-45 Score=385.65 Aligned_cols=394 Identities=20% Similarity=0.190 Sum_probs=271.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCe
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 139 (526)
++||+||||||+||++|+.|+++|++|+|+||++.+...+++..++++++++|+++|+.+.+.+... ......++..+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~-~~~~~~~~~~~~ 81 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGG-LYPPMRIYRDDG 81 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCc-cccceeEEeCCc
Confidence 5899999999999999999999999999999998877778899999999999999999988876432 223333443322
Q ss_pred ee-eecCCC--cC--CCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcC
Q 009785 140 RT-QISYPL--EK--FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAP 213 (526)
Q Consensus 140 ~~-~~~~~~--~~--~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~ 213 (526)
.. ...+.. .. ....+....++|..+++.|.+.+.+. +++++++ ++++++++++.+. +++...++ ..+++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~-~~~i~a~ 158 (502)
T PRK06184 82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAEL-GHRVEFGCELVGFEQDADGVT-ARVAGPAG-EETVRAR 158 (502)
T ss_pred eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHC-CCEEEeCcEEEEEEEcCCcEE-EEEEeCCC-eEEEEeC
Confidence 21 111110 00 01112345788999999999999887 7899888 4999998877654 44443333 2468899
Q ss_pred eEEEeecCCccccccccCCCCCCccce-eEEEEeccCCC--CCCccEEEecCC-CcEEEEecCCCc-EEEEEEeCCCCCC
Q 009785 214 LTIVCDGCFSNLRRSLCNPKVDVPSCF-VGLVLENCNLP--FENHGHVVLADP-SPILFYPISSNE-VRCLVDIPGQKVP 288 (526)
Q Consensus 214 ~vV~ADG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~p~~~~~-~~~~~~~~~~~~~ 288 (526)
+||+|||++|.+|+++++...+..... ..++.. ...+ .....+.+.... +++.++|+.++. +++.+..+.+...
T Consensus 159 ~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 237 (502)
T PRK06184 159 YLVGADGGRSFVRKALGIGFPGETLGIDRMLVAD-VSLTGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGGEP 237 (502)
T ss_pred EEEECCCCchHHHHhCCCCcccCcCCCceEEEEE-EEeecCCCcceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCccC
Confidence 999999999999999998765544322 223222 1111 122333444444 678888987654 3333433333233
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHH
Q 009785 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (526)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~ 368 (526)
..+.+++.+.++...... +..+ ........|+.....+++|+.|||+|+|||||.++|++|||||+||+||.
T Consensus 238 ~~~~~~~~~~l~~~~~~~-~~~~-------~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~ 309 (502)
T PRK06184 238 DLSADGLTALLAERTGRT-DIRL-------HSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAY 309 (502)
T ss_pred CCCHHHHHHHHHHhcCCC-Ccce-------eeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHH
Confidence 445666777776654321 1000 01122344555666678999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 009785 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLL 448 (526)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~ 448 (526)
+|+|+|+.+.+ + +.+.+|++|+.+|+|++..++..+..+.+.+... +. .+.. .....+..|..+++...
T Consensus 310 ~LawkLa~vl~---g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~----~~~~--~~~~~~~~y~~~~~~~~ 378 (502)
T PRK06184 310 NLGWKLAAVLA---G-APEALLDTYEEERRPVAAAVLGLSTELLDAIKRG-DM----RRGR--DVQQLDLGYRGSSLAVD 378 (502)
T ss_pred HHHHHHHHHHc---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-Hh----hccc--chhcceeecCCCcccCC
Confidence 99999998654 2 3478999999999999999999999888776432 11 1111 22345666777776543
Q ss_pred cC---CCCCCchhHHHHHH----------HHHHH-HhhhcccC
Q 009785 449 SG---LNPRPLILVFHFFA----------VAIYG-VGRILLPF 477 (526)
Q Consensus 449 ~g---~~~~p~~~~~h~~~----------~~l~~-~~~~l~~~ 477 (526)
+. ..+.||.|+||.|+ .|+++ .+|+|+.+
T Consensus 379 ~~~~~~~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~ 421 (502)
T PRK06184 379 GPERTGGLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAF 421 (502)
T ss_pred CcccCCCCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEe
Confidence 21 24679999999986 56664 56888753
No 13
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=3.7e-44 Score=373.50 Aligned_cols=370 Identities=16% Similarity=0.192 Sum_probs=264.8
Q ss_pred CcEEEECCCHHHHHHHHHHHh----CCCeEEEEecCCCCCC------------cccceeeCcchHHHHHHcCCcchhhcc
Q 009785 61 ADVIVVGAGVAGAALANTLAK----DGRRVHVIERDLSEPD------------RIVGELLQPGGYLKLIELGLEDCVEQI 124 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~----~G~~V~l~Er~~~~~~------------~~~g~~l~~~~~~~l~~lGl~~~l~~~ 124 (526)
|||+||||||+|+++|+.|++ +|++|+|+||++.+.. ..++..++++++++|+++|+++.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 8999999999643321 246788999999999999999988765
Q ss_pred cceeeeeeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCC--CeEEEece-EEEEEee----CCeEEE
Q 009785 125 DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP--NVRLEQGT-VTSLLEE----KGTIKG 197 (526)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~--~v~i~~~~-v~~l~~~----~~~v~g 197 (526)
...+.....++.........+.... ...+.++.++|..+.+.|.+.+.+.+ ++++++++ |++++.+ ++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 4445555565554332233333222 22345678999999999999998886 69999885 9998742 111124
Q ss_pred EEEEeCCCcEEEEEcCeEEEeecCCccccccccCCCCCCccceeEEEEe-ccC-CCCCCccEEEecCCCcEEEEecCCCc
Q 009785 198 VQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCN-LPFENHGHVVLADPSPILFYPISSNE 275 (526)
Q Consensus 198 v~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 275 (526)
|++...+|+ +++||+||+|||.+|.||+.+++...+..+...+++.. ..+ .+++...+.++.+.+++.++|+.++.
T Consensus 160 v~v~~~~g~--~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~~~~lPl~~~~ 237 (437)
T TIGR01989 160 VHITLSDGQ--VLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGPIALLPLPDNN 237 (437)
T ss_pred eEEEEcCCC--EEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCCEEEeECCCCC
Confidence 566667776 57899999999999999999998776655444444432 111 23334445566788899999999888
Q ss_pred EEEEEEeCCCC---CCCCCchHHHHHHHHhcC---CCCCh---------hh-----------------HHHHHhhhcCCC
Q 009785 276 VRCLVDIPGQK---VPSISNGEMANYLKTVVA---PQIPR---------EI-----------------FHSFVAAVDGGN 323 (526)
Q Consensus 276 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~---~~~~~---------~l-----------------~~~~~~~~~~~~ 323 (526)
.++++..+... ....+.++..+.+.+.+. ...|. .+ ...+ ..+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 316 (437)
T TIGR01989 238 STLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRV-IGVVDKS 316 (437)
T ss_pred EEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchh-heeeccc
Confidence 88888765321 112344555555544330 00000 00 0000 0111112
Q ss_pred eEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHH
Q 009785 324 IKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAST 403 (526)
Q Consensus 324 i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 403 (526)
...++.....+++|..+||+|+|||||.+||++|||+|+||+||.+|+|+|.+....+.....+.+|++|+++|++++..
T Consensus 317 ~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 396 (437)
T TIGR01989 317 RAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVV 396 (437)
T ss_pred ceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 35667777778899999999999999999999999999999999999999997643222122357999999999999999
Q ss_pred HHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 404 INTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 404 ~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
++..+..+.++|... ++....+|+..+..+.
T Consensus 397 v~~~t~~l~~l~~~~-~~~~~~~R~~~l~~~~ 427 (437)
T TIGR01989 397 LLGLVDKLHKLYATD-FPPVVALRTFGLNLTN 427 (437)
T ss_pred HHHHHHHHHHHHcCC-ccHHHHHHHHHHHHhh
Confidence 999999999999876 7788899998876654
No 14
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=7.8e-43 Score=375.78 Aligned_cols=378 Identities=17% Similarity=0.196 Sum_probs=256.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEE
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALF 135 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~-G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 135 (526)
+..++||+||||||+||++|+.|+++ |++|+|+||.+.....+.+..++++++++|+++|+.+.+.+.. .......+|
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g-~~~~~~~~~ 107 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEA-YWINETAFW 107 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhc-ccccceEEE
Confidence 45679999999999999999999995 9999999999877677788899999999999999999887643 233444555
Q ss_pred ECCee--eee----cCC-CcCCCCCcccceeechHHHHHHHHHHHcCCC-eEEEece-EEEEEeeCC--eEEEEEEEeC-
Q 009785 136 KDGNR--TQI----SYP-LEKFHSDVAGRGFHNGRFVQRLREKAASLPN-VRLEQGT-VTSLLEEKG--TIKGVQYKTK- 203 (526)
Q Consensus 136 ~~~~~--~~~----~~~-~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~-v~i~~~~-v~~l~~~~~--~v~gv~v~~~- 203 (526)
..+.. ..+ ... ............++|..+++.|.+.+.+.+. +.+++++ +++++++++ ..+.|++.+.
T Consensus 108 ~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~ 187 (634)
T PRK08294 108 KPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTD 187 (634)
T ss_pred cCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECC
Confidence 43211 000 000 0000011112467899999999999987753 6777774 999986542 2223666553
Q ss_pred ---CCcEEEEEcCeEEEeecCCccccccccCCCCCCccceeEEEEe---ccCCCCCCccE-EEecCCCcEEEEecCCCc-
Q 009785 204 ---AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE---NCNLPFENHGH-VVLADPSPILFYPISSNE- 275 (526)
Q Consensus 204 ---~G~~~~i~a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~- 275 (526)
+|++.+++|||||||||++|.||++++++..+........+.. ..++|...... +...+++.++++|..++.
T Consensus 188 ~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~ 267 (634)
T PRK08294 188 GEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYL 267 (634)
T ss_pred CCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeE
Confidence 5655689999999999999999999998766544332222211 23444322222 233466889999998874
Q ss_pred EEEEEEeCC---CC---CCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCC----------CC
Q 009785 276 VRCLVDIPG---QK---VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPY----------PT 339 (526)
Q Consensus 276 ~~~~~~~~~---~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~----------~~ 339 (526)
+++++.... .. ....+.+++.+.+++.+.|...+ +. ...+...++...+.+++| +.
T Consensus 268 ~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~-~~-------~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~ 339 (634)
T PRK08294 268 VRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLD-VK-------EVAWWSVYEVGQRLTDRFDDVPAEEAGTRL 339 (634)
T ss_pred EEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCc-ee-------EEeEEecccccceehhhccccccccccccc
Confidence 566655421 11 12345666777776655442111 10 112233445445555555 46
Q ss_pred CcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCC
Q 009785 340 PGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASP 419 (526)
Q Consensus 340 grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~ 419 (526)
|||+|+|||||.++|.+|||||+||+||.+|+|+|+.+.. +.+.+++|++|+.||+|+++.++..+..+.++|...+
T Consensus 340 gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~---g~a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~~ 416 (634)
T PRK08294 340 PRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLS---GRSPPELLHTYSAERQAIAQELIDFDREWSTMMAAPP 416 (634)
T ss_pred CCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999998753 3345789999999999999999999999999997653
Q ss_pred ch----HHHHHHHHH----HHHHhcCCCCcchhhh
Q 009785 420 DE----ARKEMRQAC----FDYLSLGGIFSSGPVS 446 (526)
Q Consensus 420 ~~----~~~~lr~~~----~~~~~~g~~~~~~~~~ 446 (526)
.. ....+.+.. ......+-.|..+++.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~sG~~~~Y~~s~l~ 451 (634)
T PRK08294 417 KEGGGVDPAELQDYFVKHGRFTAGTATHYAPSLLT 451 (634)
T ss_pred ccccccCHHHHHHHHHHhhhhhcccCcccCCcccc
Confidence 21 122333322 1122456667666654
No 15
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=4.5e-43 Score=362.98 Aligned_cols=362 Identities=20% Similarity=0.283 Sum_probs=252.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC--------CCcccceeeCcchHHHHHHcCCcchhhcccceeeee
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE--------PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG 131 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~--------~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~ 131 (526)
++||+||||||+|+++|+.|+++|++|+|+|+.+.. ....++..++++++++|+++|+++.+.+....+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999998621 123456779999999999999998876543334455
Q ss_pred eEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEE
Q 009785 132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTA 210 (526)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i 210 (526)
..+++........+..........++.+++..+.+.|.+.+.+. +++++++ ++++++++++. +++...+|+ ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v~~~~g~--~~ 155 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDS-DIGLLANARLEQMRRSGDD---WLLTLADGR--QL 155 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcC-CCEEEcCCEEEEEEEcCCe---EEEEECCCC--EE
Confidence 55555433323333322222233467889999999999988876 7899888 59999887764 445556675 46
Q ss_pred EcCeEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCc-E---EEEEEeCCC
Q 009785 211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-V---RCLVDIPGQ 285 (526)
Q Consensus 211 ~a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~---~~~~~~~~~ 285 (526)
+||+||+|||.+|.+|+.+++...........++.. ....+.....+..+.+.+++.++|+.++. . .+.+..+.+
T Consensus 156 ~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~ 235 (405)
T PRK05714 156 RAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPE 235 (405)
T ss_pred EeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHH
Confidence 799999999999999999987654444333433332 11222222334445777899999997432 1 223433321
Q ss_pred CC---CCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHH
Q 009785 286 KV---PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTV 362 (526)
Q Consensus 286 ~~---~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~ 362 (526)
.. ...+.++..+.+.+.+.+ . +.+.........|+.....+++|.++||+|+|||||.++|+.|||+|+
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~~~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~ 307 (405)
T PRK05714 236 EAERLMALDDDAFCAALERAFEG----R----LGEVLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNL 307 (405)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH----H----hCCceecCCccEEecceeehhhhccCCEEEEEeccccCCCcccccccH
Confidence 10 112223333333332211 1 111112233455777777789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHhc
Q 009785 363 ALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSL 436 (526)
Q Consensus 363 al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 436 (526)
||+||.+|+++|......+.....+.+|+.|+++|++++..++..++.+.++|... +.....+|+..+..+..
T Consensus 308 al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~ 380 (405)
T PRK05714 308 GFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQAD-PLPLRWLRNTGLKLVDQ 380 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhh
Confidence 99999999999986432111122358999999999999999999999999999876 77788889988776543
No 16
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=6.8e-43 Score=357.23 Aligned_cols=347 Identities=18% Similarity=0.267 Sum_probs=250.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC----CcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEE
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~----~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 136 (526)
+||+||||||+|+++|+.|++.|++|+|+|+.+... ...++..++++++++|+++|+++.+.... .+.....+++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~~~~ 80 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFV-AEMQDIYVVD 80 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhc-CCCcEEEEEE
Confidence 699999999999999999999999999999974322 23578889999999999999998876542 3445555555
Q ss_pred CCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
........+... .....++.++|..|.+.|++.+.+.++++++++ +++++.++++.+ ++...++ +++||+|
T Consensus 81 ~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v---~v~~~~~---~~~adlv 152 (374)
T PRK06617 81 NKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYS---IIKFDDK---QIKCNLL 152 (374)
T ss_pred CCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeE---EEEEcCC---EEeeCEE
Confidence 433323333321 223457899999999999999999888998877 499998877754 3444444 4779999
Q ss_pred EEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCc-EEEEEEeCCCCC---CCC
Q 009785 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQKV---PSI 290 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~---~~~ 290 (526)
|+|||.+|.+|+.++++...... ..++.+. ..+.++.+....++...++++++|+.++. ..++|..+.+.. ...
T Consensus 153 IgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~ 231 (374)
T PRK06617 153 IICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNL 231 (374)
T ss_pred EEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcC
Confidence 99999999999999876533332 3333332 22233333334456677889999998875 455565542111 111
Q ss_pred CchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHH
Q 009785 291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL 370 (526)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~L 370 (526)
+.++..+.+.....+ .+. .......+..++.....+.+|..|||+|+|||||.+||+.|||+|+||+||.+|
T Consensus 232 ~~~~~~~~~~~~~~~----~~~----~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~L 303 (374)
T PRK06617 232 PVEEVRFLTQRNAGN----SLG----KITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEIL 303 (374)
T ss_pred CHHHHHHHHHHhhch----hcC----ceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHH
Confidence 222333333322111 110 101112356678777788999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHhc
Q 009785 371 RNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSL 436 (526)
Q Consensus 371 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 436 (526)
++.|.. ..+|+.|+++|++++..++..+..+.++|... .+....+|+..+..+..
T Consensus 304 a~~L~~----------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~-~~~~~~~R~~~l~~~~~ 358 (374)
T PRK06617 304 SMIVSN----------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNY-SKNLRCLRQIGFKVINN 358 (374)
T ss_pred HHHHcC----------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhc
Confidence 999842 15899999999999999999999999999876 67788899988776543
No 17
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=7.8e-43 Score=362.62 Aligned_cols=368 Identities=18% Similarity=0.194 Sum_probs=251.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC--cccceeeCcchHHHHHHcCCcchhhcccceeeeeeE
Q 009785 56 ECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD--RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (526)
Q Consensus 56 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~--~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 133 (526)
.++.++||+||||||+|+++|+.|+++|++|+|+||++.... ++.+..++++++++|+++|+++.+..... +.....
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~ 92 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIG-KFRQIR 92 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcC-CccEEE
Confidence 344469999999999999999999999999999999986543 35567899999999999999988765322 233334
Q ss_pred EEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEc
Q 009785 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (526)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a 212 (526)
++.........+...+......++...+..+.+.|++.+.+.++++++++ ++++++++++.+. |++.+ +++..+++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~-~~~~~~i~a 170 (415)
T PRK07364 93 LSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEI-EGKQQTLQS 170 (415)
T ss_pred EEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEcc-CCcceEEee
Confidence 44332222222332222222234555566788999999988888999987 4999987776543 55443 233346889
Q ss_pred CeEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCC---CC
Q 009785 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VP 288 (526)
Q Consensus 213 ~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~ 288 (526)
|+||+|||.+|.+|+.++............+.+. ..+.+........+...++++++|++++..++++..+.+. ..
T Consensus 171 dlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 250 (415)
T PRK07364 171 KLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALL 250 (415)
T ss_pred eEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHH
Confidence 9999999999999999987544332222222211 1222222222222345678899999988877776654221 11
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHH
Q 009785 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (526)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~ 368 (526)
..+.++..+.+.+.+.+.++ .+. .......++.....+.+|..||++|+|||||.++|++|||+|+||+||.
T Consensus 251 ~~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~ 322 (415)
T PRK07364 251 ALPEAEFLAELQQRYGDQLG-KLE-------LLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAA 322 (415)
T ss_pred CCCHHHHHHHHHHHhhhhhc-Cce-------ecCCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHH
Confidence 22334444444443322211 110 0112334666666678899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
+|+++|......+.....+++|+.|+++|++++..++..+..+.++|..+ ++....+|+..+..+.
T Consensus 323 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~ 388 (415)
T PRK07364 323 ALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQ-WWPLVVVRRLGLWLLR 388 (415)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHh
Confidence 99999986532111111247999999999999999999999999999876 6777888988777654
No 18
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-43 Score=366.60 Aligned_cols=348 Identities=20% Similarity=0.215 Sum_probs=247.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC-CcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~-~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
++||+||||||+|+++|+.|+++|++|+|+||.+.+. ...++..++++++++|+++|+++.+.+..... .... +.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~-~~~~-~~-- 78 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVA-QVTG-FA-- 78 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCcc-ccce-ee--
Confidence 4899999999999999999999999999999987543 33456789999999999999998876532111 1000 00
Q ss_pred eeeeecCCCcCCC-CCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 139 NRTQISYPLEKFH-SDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
. ..+...... ..+.+..+.+..+++.|.+.+++. ++++++++ ++++.++++. |++...+|+ ++++|+||
T Consensus 79 -~--~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~v~~~~~~---v~v~~~~g~--~i~a~~vV 149 (488)
T PRK06834 79 -A--TRLDISDFPTRHNYGLALWQNHIERILAEWVGEL-GVPIYRGREVTGFAQDDTG---VDVELSDGR--TLRAQYLV 149 (488)
T ss_pred -e--EecccccCCCCCCccccccHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCe---EEEEECCCC--EEEeCEEE
Confidence 0 111111111 123456788899999999999887 78998885 9999988774 444455665 57899999
Q ss_pred EeecCCccccccccCCCCCCccceeEEEEeccCCCCCCccEEEecCCCcEEEEecC-CCcEEEEEEeCCCC-CCCCCchH
Q 009785 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSPILFYPIS-SNEVRCLVDIPGQK-VPSISNGE 294 (526)
Q Consensus 217 ~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~-~~~~~~~~ 294 (526)
+|||.+|.+|+++++..++.......++.. ..++.+........+.++..+.|.. ++..++.+..+... ....+.++
T Consensus 150 gADG~~S~vR~~lgi~~~g~~~~~~~~~~d-v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (488)
T PRK06834 150 GCDGGRSLVRKAAGIDFPGWDPTTSYLIAE-VEMTEEPEWGVHRDALGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDD 228 (488)
T ss_pred EecCCCCCcHhhcCCCCCCCCcceEEEEEE-EEecCCCCcceeeCCCceEEEeccCCCCeEEEEEecCCCCCCCCCCHHH
Confidence 999999999999998777665444444332 2222211122333445566667765 45555555443221 11334455
Q ss_pred HHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHHH
Q 009785 295 MANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLL 374 (526)
Q Consensus 295 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~L 374 (526)
..+.+++.....+... ....+..++.....+++|+.|||+|+|||||.++|++|||||+||+||.||+|+|
T Consensus 229 ~~~~l~~~~g~~~~~~---------~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkL 299 (488)
T PRK06834 229 LREALIAVYGTDYGIH---------SPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKL 299 (488)
T ss_pred HHHHHHHhhCCCCccc---------cceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHH
Confidence 5565665443222211 1124566777778899999999999999999999999999999999999999999
Q ss_pred hhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 375 RHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 375 ~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
+.+.. +.+.+.+|++|++||+|++..++..+..+..++. . ++....+|+...+++.
T Consensus 300 a~vl~---g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~-~-~~~~~~lR~~~~~~~~ 355 (488)
T PRK06834 300 AQVVK---GTSPESLLDTYHAERHPVAARVLRNTMAQVALLR-P-DDRTEALRDIVAELLG 355 (488)
T ss_pred HHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-ChHHHHHHHHHHHHhc
Confidence 98653 2345789999999999999999998888887775 3 6777888988776643
No 19
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=1.9e-42 Score=356.25 Aligned_cols=359 Identities=23% Similarity=0.305 Sum_probs=247.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
.++||+||||||+|+++|+.|+++|++|+|+||++.......+..++|+++++|+++|+++.+.+..........++.++
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 35899999999999999999999999999999998766555666799999999999999988876543333344444444
Q ss_pred eeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEE
Q 009785 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (526)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ 217 (526)
+.. ..++............++|..+.+.|.+.+...+++++++++ ++++.++++.+. +.++..+|+ ++++|+||+
T Consensus 84 ~~~-~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-~~v~~~~g~--~~~~~~vIg 159 (388)
T PRK07045 84 ELI-ASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTV-TSVTLSDGE--RVAPTVLVG 159 (388)
T ss_pred cEE-EEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcE-EEEEeCCCC--EEECCEEEE
Confidence 322 112211111111123578899999999998877889999885 999987655431 334456675 477999999
Q ss_pred eecCCccccccc-cCCCCCC---ccceeEEEEeccCCCCCCccEEEecC-CCcEEEEecCCCcEEEEEEeCCCCCCC---
Q 009785 218 CDGCFSNLRRSL-CNPKVDV---PSCFVGLVLENCNLPFENHGHVVLAD-PSPILFYPISSNEVRCLVDIPGQKVPS--- 289 (526)
Q Consensus 218 ADG~~S~vR~~l-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 289 (526)
|||.+|.+|+++ +.+.... .....+.+...... +.....++.. .+..+++|++++..++.+.++.+...+
T Consensus 160 ADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
T PRK07045 160 ADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSV--RECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLA 237 (388)
T ss_pred CCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCc--cccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccC
Confidence 999999999975 4332211 11223333221111 2233344544 345778999888778887776443222
Q ss_pred -CCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHH
Q 009785 290 -ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (526)
Q Consensus 290 -~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~ 368 (526)
...+++.+.+.+++.+. +.+.+........+..++.....+++|..|||+|+|||||.++|++|||+|+||+||.
T Consensus 238 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~ 313 (388)
T PRK07045 238 DTTRTKLLARLNEFVGDE----SADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAG 313 (388)
T ss_pred CCCHHHHHHHHhhhcCcc----chHHHhccCcccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHHHH
Confidence 22344444454443222 2222211111122333455556678899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHH
Q 009785 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC 430 (526)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~ 430 (526)
+|+++|..... +....+++|+.|+++|++++..++..++.+.+.|... ++..+..|..+
T Consensus 314 ~La~~L~~~~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 372 (388)
T PRK07045 314 ELGACLDLHLS--GQIALADALERFERIRRPVNEAVISYGHALATTYHDR-AALVANFRSQL 372 (388)
T ss_pred HHHHHHHhhcC--CchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccc-hhHHHHHHhhh
Confidence 99999987532 2345789999999999999999999999999998765 66666666655
No 20
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=358.31 Aligned_cols=367 Identities=20% Similarity=0.195 Sum_probs=264.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
+++||+||||||+|+++|+.|+++|++|+|+|+++......++..+++.+.+.|+++|+++.+.+....+...+.++..+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 46899999999999999999999999999999987554455788999999999999999988776544455566666555
Q ss_pred eee-eecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 139 NRT-QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 139 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
... ...+..... ..+.++.+.+..+.+.|.+.+.+.++++++++ +++++..+++.+.+|++...+|+ .+++||+||
T Consensus 85 ~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~-~~i~a~~vI 162 (407)
T PRK06185 85 RTVTLADFSRLPT-PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGP-GEIRADLVV 162 (407)
T ss_pred eEEEecchhhcCC-CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCc-EEEEeCEEE
Confidence 322 222221111 12345678899999999999988778999888 59999988888877777766664 468899999
Q ss_pred EeecCCccccccccCCCCCCccceeEEEEeccCCC--CCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCCCCCCc--
Q 009785 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP--FENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISN-- 292 (526)
Q Consensus 217 ~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-- 292 (526)
+|||.+|.+|+.++++............+. .+.+ .......++.++++++++|.+ +..++.+..+.+.......
T Consensus 163 ~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~ 240 (407)
T PRK06185 163 GADGRHSRVRALAGLEVREFGAPMDVLWFR-LPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGGYAALRAAG 240 (407)
T ss_pred ECCCCchHHHHHcCCCccccCCCceeEEEe-cCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCCchhhhhhh
Confidence 999999999999988654433322222222 1211 112234466778889999987 6666777666443322222
Q ss_pred -hHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHH
Q 009785 293 -GEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (526)
Q Consensus 293 -~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La 371 (526)
+++.+.+.+. +| .+.+.+...........++.....+.+|..+|++|+|||||.+||++|||+|+||+|+..|+
T Consensus 241 ~~~~~~~~~~~----~p-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La 315 (407)
T PRK06185 241 LEAFRERVAEL----AP-ELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAA 315 (407)
T ss_pred HHHHHHHHHHh----Cc-cHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHH
Confidence 2223333222 22 22222222222234456666666788999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCc--hHHHHHHHHHHHHHhcC
Q 009785 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPD--EARKEMRQACFDYLSLG 437 (526)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~--~~~~~lr~~~~~~~~~g 437 (526)
+.|......++ ..+.+|+.|+++|++....++.++..+.++|..+ . +....+|+..+..+..-
T Consensus 316 ~~l~~~~~~~~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~R~~~l~~~~~~ 380 (407)
T PRK06185 316 NILAEPLRRGR--VSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAP-ALAGRGPLGPPLLLRLLNRL 380 (407)
T ss_pred HHHHHHhccCC--ccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccc-cccCccccCCchHHHHHHhC
Confidence 99997643222 2348999999999999999999999999999876 4 66677777776665433
No 21
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2.3e-42 Score=354.72 Aligned_cols=356 Identities=18% Similarity=0.189 Sum_probs=250.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC------cccceeeCcchHHHHHHcCCcchhhcccceeeeeeE
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD------RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~------~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 133 (526)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.... ..+...++++++++|+++|+++.+.+....+.....
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 48999999999999999999999999999998753211 113357999999999999999888653333333444
Q ss_pred EEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEc
Q 009785 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (526)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a 212 (526)
.+..... ...++.........++.+.+..+...|.+.+.+.++++++.++ |++++++++. +++...+|. +++|
T Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~---~~v~~~~g~--~~~~ 156 (384)
T PRK08849 83 TWEHPEC-RTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG---NRVTLESGA--EIEA 156 (384)
T ss_pred EEeCCCc-eEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe---EEEEECCCC--EEEe
Confidence 4443221 1222222222233457788888999999998888889999885 9999887764 445566775 4779
Q ss_pred CeEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCC---CCC
Q 009785 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQ---KVP 288 (526)
Q Consensus 213 ~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~ 288 (526)
|+||+|||.+|.+|+++++..........++++. ..+.+..+..+.++.+.++..++|+.++...+.+..... ...
T Consensus 157 ~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~~~~~~~~~ 236 (384)
T PRK08849 157 KWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSFLPLCGNQGSLVWYDSPKRIKQLS 236 (384)
T ss_pred eEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEEeEcCCCceEEEEECCHHHHHHHH
Confidence 9999999999999999987654443333333322 223334444455556667777789977665555543321 111
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHH
Q 009785 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (526)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~ 368 (526)
..+.++..+.+.+.+.+.+. .+.......|+.....+++|..|||+|+|||||.++|+.|||+|+||+||.
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~ 307 (384)
T PRK08849 237 AMNPEQLRSEILRHFPAELG---------EIKVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVD 307 (384)
T ss_pred cCCHHHHHHHHHHHhhhhhC---------cEEeccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHH
Confidence 22344444444443221111 011223355666667788999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHhc
Q 009785 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSL 436 (526)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 436 (526)
+|++.|... +...+++|+.|+++|+++...++..++.+.++|+.. +.....+|+..+..+..
T Consensus 308 ~L~~~l~~~-----~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~ 369 (384)
T PRK08849 308 VLLAETEKQ-----GVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNS-LTPLKFVRNAALKLAEN 369 (384)
T ss_pred HHHHHHHhc-----CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHhc
Confidence 999998742 123478999999999999999999999999999876 66778889887766543
No 22
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=1.3e-42 Score=358.03 Aligned_cols=362 Identities=21% Similarity=0.271 Sum_probs=257.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc-----ccceeeCcchHHHHHHcCCcchhhcccceeeeeeE
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~-----~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 133 (526)
..+||+||||||+|+++|+.|+++|++|+|+||++.+... .+...++++++++|+++|+++.+.+....+.....
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 4689999999999999999999999999999998654322 23356899999999999999888764333444555
Q ss_pred EEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEc
Q 009785 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (526)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a 212 (526)
++..+......++.........++.++|..+.+.|.+.+.+. +++++.+ +|++++.+++. +++...+|+ ++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~a 158 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAA-GVQLHCPARVVALEQDADR---VRLRLDDGR--RLEA 158 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeEEEEEecCCe---EEEEECCCC--EEEe
Confidence 555432222333332233334567899999999999998886 7888887 49999877764 445556665 4679
Q ss_pred CeEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCC---C
Q 009785 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKV---P 288 (526)
Q Consensus 213 ~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~ 288 (526)
|+||+|||.+|.+|+.++++.........+++.. ..+.+.....+.++.+++++.++|+.++..++++.++.+.. .
T Consensus 159 ~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~~ 238 (392)
T PRK08773 159 ALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERVL 238 (392)
T ss_pred CEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHHHHHH
Confidence 9999999999999999987654433334454433 22334444444456677889999999888778887653211 1
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHH
Q 009785 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (526)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~ 368 (526)
..+.++..+.+.+.+.+.+. .+. .......++.....+++|..+||+|+|||||.++|++|||+|+||+||.
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~ 310 (392)
T PRK08773 239 ALDEAAFSRELTQAFAARLG-EVR-------VASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVA 310 (392)
T ss_pred cCCHHHHHHHHHHHHhhhhc-CeE-------ecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHH
Confidence 12223333333332221111 000 0111224666666788999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
+|+++|.+....+.+.....+|++|+++|+++...+......+.++|... .+....+|+..+..+.
T Consensus 311 ~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~-~~~~~~~r~~~l~~~~ 376 (392)
T PRK08773 311 ALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSND-EMHLTLLRGSVLGLAG 376 (392)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHh
Confidence 99999997543222223457999999999999888877778999999876 7788889998876654
No 23
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=356.40 Aligned_cols=362 Identities=19% Similarity=0.204 Sum_probs=253.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC-----CcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEE
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 134 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~-----~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 134 (526)
++||+||||||+|+++|+.|+++|++|+|+||.+... ..+.+..+++++++.|+++|+++.+......+..+..+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 6899999999999999999999999999999997532 12334568899999999999998876644344445555
Q ss_pred EECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcC
Q 009785 135 FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP 213 (526)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~ 213 (526)
+.........++.........++.++|..+.+.|.+.+.+.+++++++++ |++++++++. +.+...+|+ +++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~---~~v~~~~g~--~~~a~ 157 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG---AQVTLANGR--RLTAR 157 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe---EEEEEcCCC--EEEeC
Confidence 54332222333322222234567789999999999988776789999885 9999877664 334456675 47799
Q ss_pred eEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCCC---C
Q 009785 214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVP---S 289 (526)
Q Consensus 214 ~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~ 289 (526)
+||+|||.+|.+|+.++++..........+... ....+.......+++.+++++++|+.++..++.+.++.+..+ .
T Consensus 158 ~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 237 (392)
T PRK09126 158 LLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLA 237 (392)
T ss_pred EEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHc
Confidence 999999999999999986543222111111111 112223334455677777889999998888887766532111 1
Q ss_pred CCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHH
Q 009785 290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (526)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~ 369 (526)
.+.++..+.+.+.+.+.+. .......+..++.....+++|..+||+|+|||||.++|++|||+|+||+||..
T Consensus 238 ~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~ 309 (392)
T PRK09126 238 LDPEAFAAEVTARFKGRLG--------AMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDI 309 (392)
T ss_pred CCHHHHHHHHHHHHhhhcc--------CeEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHH
Confidence 2223333333222111110 00011233455665566788999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
|+++|..+...+.+...+++|+.|+++|++++..++..++.+.+++... ++....+|+.++..+.
T Consensus 310 la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~ 374 (392)
T PRK09126 310 LARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDD-RPPARLLRRAVLRAAN 374 (392)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHh
Confidence 9999987642222223478999999999999999999999999999876 6777889998877654
No 24
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=7.4e-42 Score=358.40 Aligned_cols=335 Identities=17% Similarity=0.146 Sum_probs=241.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCe
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 139 (526)
.+||+||||||+||++|+.|+++|++|+|+||.+.+...+++..++++++++|+.+|+.+.+.... .+.....+|.++.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~-~~~~~~~~~~~g~ 83 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLG-KPCNTSSVWANGK 83 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhC-ccceeEEEecCCc
Confidence 589999999999999999999999999999999877666778889999999999999998776533 2223334444433
Q ss_pred eeeecCC-CcCC--CCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 140 RTQISYP-LEKF--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 140 ~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
....... .... ...+....+.+..+++.|.+.+.+. ++++++++ |+++.++++++ ++...+|+ +++|++|
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~-Gv~v~~~~~v~~l~~~~~~v---~v~~~~g~--~v~a~~v 157 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEA-GAAVKRNTSVVNIELNQAGC---LTTLSNGE--RIQSRYV 157 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCee---EEEECCCc--EEEeCEE
Confidence 2211110 0001 1112234577888999999999887 78998884 99999887754 33345564 5789999
Q ss_pred EEeecCCccccccccCCCCCCccceeEEEE---eccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCCCCCCc
Q 009785 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVL---ENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISN 292 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 292 (526)
|+|||.+|.+|++++++.++........+. .+.+.+.......+..+.+.++++|..++..++++... .+..+.
T Consensus 158 VgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~---~~~~t~ 234 (487)
T PRK07190 158 IGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMD---TKDFTL 234 (487)
T ss_pred EECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcC---CCCCCH
Confidence 999999999999999877654433222222 12333331223334466678888999877666554332 124456
Q ss_pred hHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCC-CCcEEEEccCCCcCCCCCchhHHHHHHHHHHHH
Q 009785 293 GEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYP-TPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (526)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~-~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La 371 (526)
++..+.+++.+.+. .+. ..+..+...|+...+.+++|+ .|||+|+|||||.++|.+|||||+||+||.||+
T Consensus 235 ~~~~~~l~~~~~~~---~~~-----~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~ 306 (487)
T PRK07190 235 EQAIAKINHAMQPH---RLG-----FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLI 306 (487)
T ss_pred HHHHHHHHHhcCCC---CCc-----eEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHH
Confidence 66666666544322 110 112234567888888999997 799999999999999999999999999999999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhH
Q 009785 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVF 415 (526)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~ 415 (526)
|+|+.+.+ +.+.+.+|++|+.||+|++..++..+..+.++.
T Consensus 307 wkLa~v~~---g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~ 347 (487)
T PRK07190 307 WKLNMVIH---HGASPELLQSYEAERKPVAQGVIETSGELVRST 347 (487)
T ss_pred HHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99997643 233478999999999999999999888877765
No 25
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=9.2e-42 Score=351.14 Aligned_cols=359 Identities=22% Similarity=0.296 Sum_probs=258.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc-----ccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEE
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~-----~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 136 (526)
||+||||||+|+++|+.|+++|++|+|+||++.+... .++..+++++++.|+++|+.+.+.+....+..+..++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999999865433 35678999999999999999888763334455555665
Q ss_pred CCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
.+......++.........++.++|..+.+.|.+.+.+.++++++++ +|+++..+++. +.+..++|+ ++++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~~~v 155 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDH---VELTLDDGQ--QLRARLL 155 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe---eEEEECCCC--EEEeeEE
Confidence 54332223332222223346789999999999999998876999888 49999877664 445566776 3679999
Q ss_pred EEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCC---CCCCC
Q 009785 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPSIS 291 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~ 291 (526)
|+|||.+|.+|++++.+.........++... ....+.....+.++.++++++++|++++..++.+.++.+. ....+
T Consensus 156 i~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (385)
T TIGR01988 156 VGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALS 235 (385)
T ss_pred EEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence 9999999999999986543322222222211 2222223333445567788899999998888877765321 11233
Q ss_pred chHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHH
Q 009785 292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (526)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La 371 (526)
.+++.+.+.+.+.+.++. + .....+..++.....+.+|..+||+|+|||||.++|++|||+|+||+||.+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La 307 (385)
T TIGR01988 236 DEEFLAELQRAFGSRLGA-I-------TLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALA 307 (385)
T ss_pred HHHHHHHHHHHHhhhcCc-e-------EeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHH
Confidence 445555555433222111 0 11223455666666677899999999999999999999999999999999999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHH
Q 009785 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYL 434 (526)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~ 434 (526)
++|......+.....+++|+.|+++|++++..++..++.+.+++... ++....+|+..++.+
T Consensus 308 ~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~ 369 (385)
T TIGR01988 308 EVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSND-FPPLRLLRNLGLRLL 369 (385)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHH
Confidence 99987532111112478999999999999999999999999999876 667788888776664
No 26
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.9e-41 Score=348.98 Aligned_cols=357 Identities=18% Similarity=0.217 Sum_probs=255.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCe
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 139 (526)
.+||+||||||+|+++|+.|+++|++|+|+||++...+ .++..+.+++.++|+++|+++.+... ..+.....++..+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~lgl~~~~~~~-~~~~~~~~~~~~~g 84 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERLGLWARLAPH-AAPLQSMRIVDATG 84 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHhCchhhhHhh-cceeeEEEEEeCCC
Confidence 58999999999999999999999999999999875433 44556788899999999999887653 33455556655432
Q ss_pred eee----ecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 140 RTQ----ISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 140 ~~~----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
... ..+...+......++.+++..+.+.|.+.+.+.++++....+|+++.++++.+ ++..++|+ +++||+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~---~v~~~~g~--~~~a~~v 159 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEV---TVTLADGT--TLSARLV 159 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeE---EEEECCCC--EEEEeEE
Confidence 211 11221122233457789999999999999998877774433699998777744 44556665 4779999
Q ss_pred EEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCC---CCCCC
Q 009785 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPSIS 291 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~ 291 (526)
|+|||.+|.+|+.++++.........++.+. ....+.......++...+++.++|+.++..++.+..+.+. ....+
T Consensus 160 I~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~ 239 (388)
T PRK07494 160 VGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALS 239 (388)
T ss_pred EEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCC
Confidence 9999999999999987654443333343332 2233444444456667789999999887766666544221 11223
Q ss_pred chHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHH
Q 009785 292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (526)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La 371 (526)
.+++.+.+.+.+.+.+. ..........|+.....+++|..+||+|+|||||.++|++|||||+||+||.+|+
T Consensus 240 ~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La 311 (388)
T PRK07494 240 DAALSAAIEERMQSMLG--------KLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLV 311 (388)
T ss_pred HHHHHHHHHHHHhhhcC--------CeEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHH
Confidence 34444444332211110 0111123456777777778899999999999999999999999999999999999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
++|.... .+...+++|+.|+++|++....++..+..+.++|... .+....+|+..+..+.
T Consensus 312 ~~L~~~~---~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~ 371 (388)
T PRK07494 312 EIVEDRP---EDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSD-FLPVQDLRAAGLHLLY 371 (388)
T ss_pred HHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHh
Confidence 9998642 1234578999999999999999988999999999877 7778888998776654
No 27
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=5.8e-41 Score=345.73 Aligned_cols=360 Identities=20% Similarity=0.228 Sum_probs=248.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC------cccceeeCcchHHHHHHcCCcchhhcccceeeeeeE
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD------RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~------~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 133 (526)
++||+||||||+|+++|+.|+++|++|+|+|+.+.... ..+...+++++++.|+++|+++.+......+.....
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 58999999999999999999999999999999853221 124457899999999999999887653333323333
Q ss_pred EEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEc
Q 009785 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYA 212 (526)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a 212 (526)
.+..... ...+..........++.++|..|.+.|.+.+.+.++++++++ +++++.++++. +.+...+|+ +++|
T Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a 158 (391)
T PRK08020 85 TWEWETA-HVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG---WELTLADGE--EIQA 158 (391)
T ss_pred EEeCCCC-eEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe---EEEEECCCC--EEEe
Confidence 3322111 111221122223446789999999999999988878999877 58998877664 444556665 4779
Q ss_pred CeEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCC---CC
Q 009785 213 PLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VP 288 (526)
Q Consensus 213 ~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~ 288 (526)
|+||+|||.+|.+|+.++++.........++.+. ..+.+..+..+..+...++..++|+.++...+.+...... ..
T Consensus 159 ~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~~~~ 238 (391)
T PRK08020 159 KLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIRQLQ 238 (391)
T ss_pred CEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHHHHH
Confidence 9999999999999999987644333223333222 2222333334444566677888899876555555432110 01
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHH
Q 009785 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (526)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~ 368 (526)
..+.+++.+.+.+.. ++.+. .........||.....+++|..+|++|+|||||.++|+.|||+|+||+||.
T Consensus 239 ~~~~~~~~~~l~~~~----~~~~~-----~~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~ 309 (391)
T PRK08020 239 AMSMAQLQQEIAAHF----PARLG-----AVTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVD 309 (391)
T ss_pred CCCHHHHHHHHHHHh----hhhcc-----ceEeccccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHH
Confidence 112223333333221 11110 011112345676666788999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
+|+++|.+....+.....+.+|++|+++|++....++..++.+.++|+.+ .+....+|+..+..+.
T Consensus 310 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~~~~~~R~~~l~~~~ 375 (391)
T PRK08020 310 ALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNN-LPPLRFARNLGLMAAQ 375 (391)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHh
Confidence 99999987532222223568999999999999999888999999999887 6788889998877654
No 28
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=4.7e-41 Score=347.98 Aligned_cols=360 Identities=18% Similarity=0.239 Sum_probs=251.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCC--CcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEE
Q 009785 61 ADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G--~~V~l~Er~~~~~--~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 136 (526)
+||+||||||+|+++|+.|+++| ++|+|+||.+... ...++..++++++++|+++|+++.+.... .+.....++.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~-~~~~~~~~~~ 80 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEA-QPITDMVITD 80 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhc-CcccEEEEEe
Confidence 79999999999999999999996 9999999987533 23678899999999999999998886633 3334444444
Q ss_pred CCee-----eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEE
Q 009785 137 DGNR-----TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTA 210 (526)
Q Consensus 137 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i 210 (526)
.... ....+........+.++.++|..+.+.|.+.+.+. ++++++++ |+++.++++. +.+...+|+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v~~~~g~--~~ 154 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEAL-GIDLREATSVTDFETRDEG---VTVTLSDGS--VL 154 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCE---EEEEECCCC--EE
Confidence 2111 01111111111223456789999999999999887 78998874 9999877764 345556675 46
Q ss_pred EcCeEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCCC-
Q 009785 211 YAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVP- 288 (526)
Q Consensus 211 ~a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~- 288 (526)
++|+||+|||.+|.+|+.+++..........+++.. ....+..+....++..+++++++|++++..++.+..+.+..+
T Consensus 155 ~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~ 234 (403)
T PRK07333 155 EARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAER 234 (403)
T ss_pred EeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHH
Confidence 799999999999999999987654333333444332 222223334455666778889999999887776654321100
Q ss_pred --CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHH
Q 009785 289 --SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD 366 (526)
Q Consensus 289 --~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~D 366 (526)
....+...+.+.+.+...+++ + ........++.....+.+|..|||+|+|||||.++|++|||+|+||+|
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~D 306 (403)
T PRK07333 235 LVALDDLVFEAELEQRFGHRLGE-L-------KVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKD 306 (403)
T ss_pred HHCCCHHHHHHHHHHHhhhhcCc-e-------EeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHH
Confidence 111112222222222111110 0 001122345555567788999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHhc
Q 009785 367 IVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSL 436 (526)
Q Consensus 367 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 436 (526)
|.+|+|+|......+.....+++|++|+++|+++...++..++.+.++|..+ ++....+|+..+..+..
T Consensus 307 a~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 375 (403)
T PRK07333 307 VAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSND-STLLRSVRDIGLGLVDR 375 (403)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhc
Confidence 9999999987643222223578999999999999999999999999999876 77788889887776543
No 29
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=2.2e-41 Score=347.90 Aligned_cols=356 Identities=20% Similarity=0.271 Sum_probs=249.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEecCCCCCCc----ccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEE
Q 009785 62 DVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDR----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G-~~V~l~Er~~~~~~~----~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 136 (526)
||+||||||+|+++|+.|+++| ++|+|+||.+.+... .+++.++++++++|+++|+.+.+..... ...+..+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~-~~~~~~~~~ 79 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFAT-PILDIHVSD 79 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcC-ccceEEEEc
Confidence 7999999999999999999999 999999999765543 3568899999999999999988765432 233333333
Q ss_pred CCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
.+......+...++.....++.++|..|.+.|.+.+.+.++++++.+ +|+++.++++. +++...+|+ +++||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~ad~v 154 (382)
T TIGR01984 80 QGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY---VRVTLDNGQ--QLRAKLL 154 (382)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe---EEEEECCCC--EEEeeEE
Confidence 32111122221222223346789999999999999988668999977 59999877764 445556675 4779999
Q ss_pred EEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCC-cEEEEEEeCCCC---CCCC
Q 009785 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSN-EVRCLVDIPGQK---VPSI 290 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~---~~~~ 290 (526)
|+|||.+|.+|+.++++..........+... ....+.......++..++++.++|.+++ ..++.+..+.+. ....
T Consensus 155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 234 (382)
T TIGR01984 155 IAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANL 234 (382)
T ss_pred EEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcC
Confidence 9999999999999987544332222222221 1222322333344566678889999887 566666554221 1122
Q ss_pred CchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHH
Q 009785 291 SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL 370 (526)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~L 370 (526)
+.++..+.+.+.+.+.+. .......+..++......++|..+||+|+|||||.++|++|||+|+||+||.+|
T Consensus 235 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~L 306 (382)
T TIGR01984 235 PDAEFLAELQQAFGWRLG--------KITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETL 306 (382)
T ss_pred CHHHHHHHHHHHHhhhcc--------CeEEcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHH
Confidence 233333333332211110 111122345566666677889999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 371 RNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 371 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
+++|..... ....+++|+.|+++|++.+..++.++..+.++|..+ ++....+|+..++.+.
T Consensus 307 a~~L~~~~~---~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~ 367 (382)
T TIGR01984 307 AEVLIDARI---DLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNH-IPLLRALRNLGLLALE 367 (382)
T ss_pred HHHHHHhcc---CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHh
Confidence 999986531 223468999999999999999999999999999876 6677788888777654
No 30
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=2.6e-40 Score=340.45 Aligned_cols=357 Identities=21% Similarity=0.243 Sum_probs=238.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC--CCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE--PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~--~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
++||+||||||+|+++|+.|+++|++|+|+||++.. ....++..++|+++++|+++|+++.+.+.. ....+..++.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~-~~~~~~~~~~~ 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREG-LVHDGIELRFD 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcC-CccCcEEEEEC
Confidence 479999999999999999999999999999999753 234456679999999999999999887643 34456666666
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLE-EKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~-~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
++.....++ ..........++|..+.+.|.+.+.+. ++++++++ ++++++ +++. ..|++. .+|++.+++||+|
T Consensus 81 g~~~~~~~~--~~~~~~~~~~~~~~~l~~~Ll~~a~~~-gv~v~~~~~v~~i~~~~~~~-~~V~~~-~~G~~~~i~ad~v 155 (392)
T PRK08243 81 GRRHRIDLT--ELTGGRAVTVYGQTEVTRDLMAARLAA-GGPIRFEASDVALHDFDSDR-PYVTYE-KDGEEHRLDCDFI 155 (392)
T ss_pred CEEEEeccc--cccCCceEEEeCcHHHHHHHHHHHHhC-CCeEEEeeeEEEEEecCCCc-eEEEEE-cCCeEEEEEeCEE
Confidence 554333332 111122233556888888888887765 78888884 888876 4443 335553 4677677899999
Q ss_pred EEeecCCccccccccCCCCCC-----ccceeEEEEeccCCCCCCccEEEecC-CCcEEEEecCCCcEEEEEEeCC-CCCC
Q 009785 216 IVCDGCFSNLRRSLCNPKVDV-----PSCFVGLVLENCNLPFENHGHVVLAD-PSPILFYPISSNEVRCLVDIPG-QKVP 288 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~-~~~~ 288 (526)
|+|||.+|.+|++++...... +..+.++. .+.+.......+... .+..++++.+++..++++.++. +...
T Consensus 156 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (392)
T PRK08243 156 AGCDGFHGVSRASIPAGALRTFERVYPFGWLGIL---AEAPPVSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKVE 232 (392)
T ss_pred EECCCCCCchhhhcCcchhhceecccCceEEEEe---CCCCCCCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCcc
Confidence 999999999999997643111 11122221 122221112223333 3344444455555566665542 2223
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHH
Q 009785 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (526)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~ 368 (526)
.++.++..+.+++.+.+.....+.. ........++.....+++|..|||+|+|||||.++|++|||+|+||+||.
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~ 307 (392)
T PRK08243 233 DWSDERFWDELRRRLPPEDAERLVT-----GPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVR 307 (392)
T ss_pred cCChhHHHHHHHHhcCccccccccc-----CccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHH
Confidence 3444455555554433211111100 00011122344455677899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCC--chHHHHHHHHHHHHH
Q 009785 369 ILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASP--DEARKEMRQACFDYL 434 (526)
Q Consensus 369 ~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~--~~~~~~lr~~~~~~~ 434 (526)
+|+|+|...... +.+++|++|+++|++++..++..+..+.+++...+ ......+|+.+++.+
T Consensus 308 ~La~~L~~~~~~----~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (392)
T PRK08243 308 YLARALVEFYRE----GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYL 371 (392)
T ss_pred HHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Confidence 999999876431 23689999999999999999999999888877632 344556777766554
No 31
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=339.81 Aligned_cols=361 Identities=18% Similarity=0.245 Sum_probs=251.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc-----ccceeeCcchHHHHHHcCCcchhhcccceeeeeeE
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~-----~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 133 (526)
+++||+||||||+|+++|+.|++.|++|+|+||++..... .++..+++++++.|+++|+++.+......+.....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 3689999999999999999999999999999999765432 23477899999999999999877543333334444
Q ss_pred EEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcC
Q 009785 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAP 213 (526)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~ 213 (526)
++.... ..+.+.......+...+.+++..+.+.|.+.+++.++++++..+++++.++++. +.+...+|. +++||
T Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~a~ 157 (388)
T PRK07608 84 VFGDAH-ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDA---ATLTLADGQ--VLRAD 157 (388)
T ss_pred EEECCC-ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCe---EEEEECCCC--EEEee
Confidence 443221 112211111112233567899999999999999886688884469998877664 445556664 47799
Q ss_pred eEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCC---CCC
Q 009785 214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK---VPS 289 (526)
Q Consensus 214 ~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~ 289 (526)
+||+|||.+|.+|+.++...........++... ..+.+..+..+.|+.++++++++|++++...+.+..+.+. ...
T Consensus 158 ~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
T PRK07608 158 LVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLA 237 (388)
T ss_pred EEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHC
Confidence 999999999999999987654333323333332 2223333344566778889999999998776665543211 111
Q ss_pred CCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHH
Q 009785 290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (526)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~ 369 (526)
.+++++.+.+.+...+.+ ..+ . .......++......+.|..+||+|+|||||.++|++|||+|+||+||.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~-~~~-----~--~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~ 309 (388)
T PRK07608 238 LSPEALAARVERASGGRL-GRL-----E--CVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAA 309 (388)
T ss_pred CCHHHHHHHHHHHHHHhc-CCc-----e--ecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHH
Confidence 233445555444322100 000 0 01122335555556778999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
|+++|.......+ ....++|++|+++|+++...++..+..+.++|..+ ++....+|+..+..+.
T Consensus 310 La~~L~~~~~~~~-~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~ 373 (388)
T PRK07608 310 LADVLAGREPFRD-LGDLRLLRRYERARREDILALQVATDGLQRLFALP-GPLARWLRNAGMALVG 373 (388)
T ss_pred HHHHHHHhhccCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHh
Confidence 9999986531111 22347999999999999999999999999999876 6677788988877653
No 32
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-40 Score=335.99 Aligned_cols=351 Identities=17% Similarity=0.220 Sum_probs=244.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
.+|+||||||+|+++|+.|+++|++|+|+||++.......|..+++++++.|+.+|+.+.+.... .......++.....
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~-~~~~~~~~~~~~g~ 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAG-QILSTMNLLDDKGT 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcC-CcccceeEEcCCCC
Confidence 37999999999999999999999999999999887777788899999999999999988776532 34455555543222
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
.....+. .....++.++|..|.+.|.+.+. ..+++++ +|++++++++. +++..++|++ +++|+||+||
T Consensus 80 ~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~~~~vigad 148 (373)
T PRK06753 80 LLNKVKL---KSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENETDK---VTIHFADGES--EAFDLCIGAD 148 (373)
T ss_pred EEeeccc---ccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEecCCc---EEEEECCCCE--EecCEEEECC
Confidence 1111121 12234567899999999998764 3567777 59999877664 4455667763 6799999999
Q ss_pred cCCccccccccCCCCCCccceeEE--EEeccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCC-CCCCchHHH
Q 009785 220 GCFSNLRRSLCNPKVDVPSCFVGL--VLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKV-PSISNGEMA 296 (526)
Q Consensus 220 G~~S~vR~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~ 296 (526)
|.+|.+|+.++.........+..+ ......++.+.....+++.+++++++|..++...|.+.+..+.. +... ....
T Consensus 149 G~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~ 227 (373)
T PRK06753 149 GIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYS-SFGK 227 (373)
T ss_pred CcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccc-cccH
Confidence 999999999975432111111111 11122222333344556677788999999888777776542211 1111 1112
Q ss_pred HHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCC-CCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHHHh
Q 009785 297 NYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNR-SMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLR 375 (526)
Q Consensus 297 ~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~-~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~L~ 375 (526)
+.+.+.+. .+++.+...+ +......+..++.. ..+.++|..+||+|+|||||.++|+.|||+|+||+||..|++.|.
T Consensus 228 ~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~ 305 (373)
T PRK06753 228 PHLQAYFN-HYPNEVREIL-DKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLN 305 (373)
T ss_pred HHHHHHHh-cCChHHHHHH-HhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence 22333322 2444444333 22222222333332 234568899999999999999999999999999999999999996
Q ss_pred hhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHH
Q 009785 376 HLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYL 434 (526)
Q Consensus 376 ~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~ 434 (526)
. .+.+++|+.|+++|++++..++..+..+.+++... .+....+|+..++..
T Consensus 306 ~-------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~ 356 (373)
T PRK06753 306 A-------YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIE-SKLLVALRNRVMKRM 356 (373)
T ss_pred h-------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcC-CchHHHHHHHHHHhC
Confidence 3 24578999999999999999999999999988765 666777888876654
No 33
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-40 Score=339.04 Aligned_cols=357 Identities=16% Similarity=0.191 Sum_probs=245.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
.||+||||||+|+++|+.|+++|++|+|+||.+.......+..++++++++|+++|+++.+.+.. .+.....++.....
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~-~~~~~~~~~~~~g~ 79 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAG-YQIEHVRSVDPTGR 79 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhcc-CCccceEEEcCCCC
Confidence 37999999999999999999999999999999766554556678899999999999998887633 23444555543222
Q ss_pred eeecCCCcCCCC--CcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEE
Q 009785 141 TQISYPLEKFHS--DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (526)
Q Consensus 141 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ 217 (526)
....++...+.. ......++|..|.+.|.+.+.. ++++++++ |++++++++. |++..++|+. +++|+||+
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~--~v~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~~d~vIg 152 (391)
T PRK07588 80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG--QVETIFDDSIATIDEHRDG---VRVTFERGTP--RDFDLVIG 152 (391)
T ss_pred EEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc--CeEEEeCCEEeEEEECCCe---EEEEECCCCE--EEeCEEEE
Confidence 222222111111 1122478999999999886643 68999885 9999887774 4556677864 56999999
Q ss_pred eecCCccccccccCCCCCCccceeEEEEecc----CCCCCCc-cEEEecCCCcEEEEecCCCcEEEEEEeCCC-CCCCCC
Q 009785 218 CDGCFSNLRRSLCNPKVDVPSCFVGLVLENC----NLPFENH-GHVVLADPSPILFYPISSNEVRCLVDIPGQ-KVPSIS 291 (526)
Q Consensus 218 ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~ 291 (526)
|||.+|.+|+.+...... ...+.+...... ..+.+.. ...+.+++.++..+|+.++...+.+....+ ..+..+
T Consensus 153 ADG~~S~vR~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 231 (391)
T PRK07588 153 ADGLHSHVRRLVFGPERD-FEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLT 231 (391)
T ss_pred CCCCCccchhhccCCccc-eEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCC
Confidence 999999999986432221 122333222111 1222222 233445566888999988876665554422 223345
Q ss_pred chHHHHHHHHhcCCCCC--hhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHH
Q 009785 292 NGEMANYLKTVVAPQIP--REIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (526)
Q Consensus 292 ~~~~~~~l~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~ 369 (526)
.++..+.+++.+....+ +.+.+.+. ....+...+......++|..|||+|+|||||.++|+.|||+|+||+||..
T Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~ 308 (391)
T PRK07588 232 PAEEKQLLRDQFGDVGWETPDILAALD---DVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYV 308 (391)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHhhh---cccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHH
Confidence 55666667665542211 12222211 11112222223345678999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
|+++|.... .+.+.+|+.|+++|++++..++..+..+.+++... ++....+|+..+..+.
T Consensus 309 La~~L~~~~-----~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 309 LAGELARAG-----GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPK-TRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHhhcccccccccCC-CHHHHHHHHHHHHHhc
Confidence 999998531 23578999999999999999999999999998776 7777888998877655
No 34
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-40 Score=339.50 Aligned_cols=355 Identities=17% Similarity=0.180 Sum_probs=245.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC----CeEEEEecCCCCC--CcccceeeCcchHHHHHHcCCcchhhcccceeeeee
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDG----RRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G----~~V~l~Er~~~~~--~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 132 (526)
+++||+||||||+|+++|+.|+++| ++|+|+|+.+... ...++..++++++++|+++|+++... .+....
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~----~~~~~~ 85 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADA----TPIEHI 85 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcC----CcccEE
Confidence 3589999999999999999999987 4799999985432 23478899999999999999987521 222333
Q ss_pred EEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEE
Q 009785 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAY 211 (526)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~ 211 (526)
.++..+......+...+...+..++.++|..+.+.|.+.+.+. +++++.++ ++++.++++.+. +++.+.+|+ .+++
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~-g~~~~~~~~v~~~~~~~~~v~-v~~~~~~g~-~~i~ 162 (398)
T PRK06996 86 HVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGT-PVRWLTSTTAHAPAQDADGVT-LALGTPQGA-RTLR 162 (398)
T ss_pred EEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeeeeeeecCCeEE-EEECCCCcc-eEEe
Confidence 3443332212222223333334578899999999999999987 58888884 888877766433 333222343 4688
Q ss_pred cCeEEEeecC-CccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCc---EEEEEEeCCCC
Q 009785 212 APLTIVCDGC-FSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE---VRCLVDIPGQK 286 (526)
Q Consensus 212 a~~vV~ADG~-~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~ 286 (526)
||+||+|||. +|.+|+.+++......+...++... ..+.+.+...+..+...+++.++|+.++. .++++..+.+.
T Consensus 163 a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~ 242 (398)
T PRK06996 163 ARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDE 242 (398)
T ss_pred eeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHH
Confidence 9999999997 5788998887654444333443332 22223333344455677888889998654 44555444221
Q ss_pred ---CCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHH
Q 009785 287 ---VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVA 363 (526)
Q Consensus 287 ---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~a 363 (526)
....+.++..+.+.+.+.+.++. +. .......++.....+.+|..|||+|+|||||.++|+.|||+|+|
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-------~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~a 314 (398)
T PRK06996 243 AARRAALPDDAFLAELGAAFGTRMGR-FT-------RIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLG 314 (398)
T ss_pred HHHHHcCCHHHHHHHHHHHhccccCc-eE-------EecceEEEeeecccccceecCCEEEEEhhhccCCcccchhHHHH
Confidence 11233344444454443322211 10 11122346666667789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 364 LSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 364 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
|+||.+|+++|... + ..+++|++|+++|+++...++..+..+.++|... ++....+|+..+..+.
T Consensus 315 i~Da~~La~~L~~~---~---~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~-~~~~~~~R~~~l~~~~ 379 (398)
T PRK06996 315 LRDAHTLADALSDH---G---ATPLALATFAARRALDRRVTIGATDLLPRLFTVD-SRPLAHLRGAALTALE 379 (398)
T ss_pred HHHHHHHHHHHHhc---C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHhHHHHHHh
Confidence 99999999999752 1 1357899999999999999999999999999876 6677888888766543
No 35
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=1e-39 Score=334.60 Aligned_cols=359 Identities=21% Similarity=0.271 Sum_probs=245.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCe
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 139 (526)
..||+||||||+|+++|+.|++.|++|+|+||++.......|..+++++++.|+++|+.+.+.+.. .+.....++....
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~-~~~~~~~~~~~~g 82 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAG-FGFDGVDLFDPDG 82 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhC-CCccceEEECCCC
Confidence 579999999999999999999999999999999877777788899999999999999987776533 2333444443322
Q ss_pred eeeecCCCcCCC--CCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 140 RTQISYPLEKFH--SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
.....++..... ..+....++|..+.+.|.+.+.+. +++++++ +|+++..+++. +.+...+|+ ++++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---~~v~~~~g~--~~~ad~vI 156 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAA-GADVRLGTTVTAIEQDDDG---VTVTFSDGT--TGRYDLVV 156 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHh-CCEEEeCCEEEEEEEcCCE---EEEEEcCCC--EEEcCEEE
Confidence 222222211110 112345678999999999998876 7888888 59998876664 445556676 46799999
Q ss_pred EeecCCccccccccCCCCCCccceeEEEEeccCCC---CCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCCCCCCch
Q 009785 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP---FENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNG 293 (526)
Q Consensus 217 ~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 293 (526)
+|||.+|.+|+.+...... ..+.+...+...++ .......+.++++.+.++|.+++...+++..+.+.....+.+
T Consensus 157 ~AdG~~s~~r~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 234 (375)
T PRK06847 157 GADGLYSKVRSLVFPDEPE--PEYTGQGVWRAVLPRPAEVDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPRIEPD 234 (375)
T ss_pred ECcCCCcchhhHhcCCCCC--ceeccceEEEEEecCCCCccceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccccCChH
Confidence 9999999999988432111 12222222111111 112335667777788889998876655554443322233444
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHhhhc-CCCeEeccCCCC-CCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHH
Q 009785 294 EMANYLKTVVAPQIPREIFHSFVAAVD-GGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILR 371 (526)
Q Consensus 294 ~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~i~~~~~~~~-~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La 371 (526)
+..+.+++.+... ++.....+.+.+. ...+..++.... ...+|..|||+|+|||||.++|++|||+|+||+||.+|+
T Consensus 235 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La 313 (375)
T PRK06847 235 TLAALLRELLAPF-GGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLA 313 (375)
T ss_pred HHHHHHHHHHhhc-CchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHH
Confidence 5555565544332 2212222223222 223344444432 346799999999999999999999999999999999999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCc--hHHHHHHHHHHHHH
Q 009785 372 NLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPD--EARKEMRQACFDYL 434 (526)
Q Consensus 372 ~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~--~~~~~lr~~~~~~~ 434 (526)
++|... .+++++|+.|+++|+|++..++..++.+...+..... .....+|+..+.++
T Consensus 314 ~~L~~~------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T PRK06847 314 EELARH------DSLEAALQAYYARRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESMELLA 372 (375)
T ss_pred HHHhhC------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHHHhc
Confidence 999852 3467899999999999999999999998888754422 14456777766554
No 36
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=6.7e-41 Score=340.44 Aligned_cols=336 Identities=23% Similarity=0.272 Sum_probs=221.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceee-eeeEEEEC-
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRV-FGYALFKD- 137 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~-~~~~~~~~- 137 (526)
++||+||||||+|+++|+.|+++|++|+|+||++......+|..++++++++|+++|+.+.+.+...... ....++..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 3799999999999999999999999999999999888888999999999999999999988877543221 22222222
Q ss_pred -Ce-------eeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEE
Q 009785 138 -GN-------RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEEL 208 (526)
Q Consensus 138 -~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~ 208 (526)
+. .....+. ..........++|..|++.|++.+.+.+ +++++++ ++++.++++++..+.....+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~ 157 (356)
T PF01494_consen 81 SDSRIWVENPQIREDME--IDTKGPYGHVIDRPELDRALREEAEERG-VDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEE 157 (356)
T ss_dssp TTSEEEEEEEEEEEECH--STSGSSCEEEEEHHHHHHHHHHHHHHHT-EEEEESEEEEEEEEETTEEEEEEEETCTCEEE
T ss_pred CCccceeeecccceeee--ccccCCcchhhhHHHHHHhhhhhhhhhh-hhheeeeecccccccccccccccccccCCcee
Confidence 11 1111111 1122334567899999999999999885 9999985 899998888766333333478777
Q ss_pred EEEcCeEEEeecCCccccccccCCCCCCcc----ceeEEEEeccCCCCCCccEEEe--cCCCcEEEEecCC-CcEEEEEE
Q 009785 209 TAYAPLTIVCDGCFSNLRRSLCNPKVDVPS----CFVGLVLENCNLPFENHGHVVL--ADPSPILFYPISS-NEVRCLVD 281 (526)
Q Consensus 209 ~i~a~~vV~ADG~~S~vR~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~-~~~~~~~~ 281 (526)
+++||+||+|||.+|.+|+.++...+.... .+.++... ..++......+++ ...+.++++|..+ +...+.+.
T Consensus 158 ~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 236 (356)
T PF01494_consen 158 TIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFD-SDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWF 236 (356)
T ss_dssp EEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEE-CHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEeeeecccCcccchhhhccccccCccccccccccccccc-cccccccccccccccccccceeEeeccCCccceEEEe
Confidence 899999999999999999999865322221 12222222 2333211112222 2333457889988 43445554
Q ss_pred eCCCC-CCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhH
Q 009785 282 IPGQK-VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGM 360 (526)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~ 360 (526)
++... ......+...+.+.+.+.+ .+....... ....+..++......++|.+|||+|+|||||.++|++|||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~ 311 (356)
T PF01494_consen 237 LPFDESKEERPEEFSPEELFANLPE----IFGPDLLET-EIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGI 311 (356)
T ss_dssp EETTTTTCCSTHCHHHHHHHHHHHH----HHHTCHHHH-EEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHH
T ss_pred eeccccccccccccccccccccccc----ccccccccc-ccccccccccccccccccccceeEEeccceeeecccccCCC
Confidence 43221 1111122222222221111 111000111 22244556666667788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHH
Q 009785 361 TVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTL 407 (526)
Q Consensus 361 n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 407 (526)
|+||+||..|+++|..+.. +...+++|+.|+++|++++..++..
T Consensus 312 n~Ai~da~~La~~L~~~~~---g~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 312 NMAIEDAAALAELLAAALK---GEASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998653 2345789999999999999888654
No 37
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=8.1e-40 Score=337.84 Aligned_cols=362 Identities=20% Similarity=0.233 Sum_probs=245.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEecCCCC-----CCcccceeeCcchHHHHHHcCCcchhhcccceeee
Q 009785 59 FDADVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSE-----PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVF 130 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~---G~~V~l~Er~~~~-----~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~ 130 (526)
+.+||+||||||+|+++|+.|+++ |++|+|+||.... ....++..+++++++.|+++|+++.+..... +..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~-~~~ 80 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCAT-PIT 80 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcC-Ccc
Confidence 358999999999999999999998 9999999995322 1234678899999999999999988766432 223
Q ss_pred eeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEE
Q 009785 131 GYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELT 209 (526)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~ 209 (526)
...+...+......+...+......++.++|..+.+.|.+.+.+.++++++++ +|+++.++++. +.+...+|. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~---~~v~~~~g~--~ 155 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS---VRVTLDDGE--T 155 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe---EEEEECCCC--E
Confidence 33333222211111111122222335678999999999999888778999887 59998876664 445556664 4
Q ss_pred EEcCeEEEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCC--
Q 009785 210 AYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQK-- 286 (526)
Q Consensus 210 i~a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-- 286 (526)
+++|+||+|||.+|.+|+.+++...........+... ....+........+..+++++++|.+++...+.+.++.+.
T Consensus 156 ~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~ 235 (395)
T PRK05732 156 LTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAE 235 (395)
T ss_pred EEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHH
Confidence 6799999999999999999987543332222222111 1111112222223456678889999998877776654221
Q ss_pred -CCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHH
Q 009785 287 -VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALS 365 (526)
Q Consensus 287 -~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~ 365 (526)
....+.++..+.+.+.+. ..+ ...........+++....+.+|..|||+|+|||||.++|++|||+|+||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~ 307 (395)
T PRK05732 236 EVLSWSDAQFLAELQQAFG----WRL----GRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLR 307 (395)
T ss_pred HHHcCCHHHHHHHHHHHHH----hhh----cceeecCCcceecccccchhhhccCcEEEEeecccccCCccccccchHHH
Confidence 112233333333333211 000 00111123344566556677899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHHHHh
Q 009785 366 DIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLS 435 (526)
Q Consensus 366 Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 435 (526)
||.+|+++|..+.........+++|+.|+++|++++..++..+..+.++|..+ ......+|+..+..+.
T Consensus 308 Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~ 376 (395)
T PRK05732 308 DVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANR-WAPLVVGRNLGLMAMD 376 (395)
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHc
Confidence 99999999976532111112358999999999999999999999999999865 5677788888776654
No 38
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=4.5e-39 Score=332.12 Aligned_cols=354 Identities=20% Similarity=0.255 Sum_probs=237.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+||||||+||++|+.|+++|++|+|+||.+.......|..++++++++|+++|+++.+....... ....+. ++..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~-~~~~~~-~g~~ 80 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTP-KALYLM-DGRK 80 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCc-ceEEEe-cCCC
Confidence 47999999999999999999999999999999877777788999999999999999998887644322 222222 2221
Q ss_pred ee--ecCCCcCC---CCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCe
Q 009785 141 TQ--ISYPLEKF---HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPL 214 (526)
Q Consensus 141 ~~--~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~ 214 (526)
.. ........ ........++|..|.+.|.+.+.+.+++++++++ |+++.++++.+. +++.+.++. .++++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~~~~~~-~~~~adl 158 (400)
T PRK06475 81 ARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATIIRTNSV-ETVSAAY 158 (400)
T ss_pred cceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEEeCCCC-cEEecCE
Confidence 11 11111000 0111223679999999999999877789999885 999987766543 444433333 2477999
Q ss_pred EEEeecCCccccccccCCCCCCc--cceeEEEEeccCC--------CCCCccEEEecCCCcEEEEecCCCcEEEEEEeCC
Q 009785 215 TIVCDGCFSNLRRSLCNPKVDVP--SCFVGLVLENCNL--------PFENHGHVVLADPSPILFYPISSNEVRCLVDIPG 284 (526)
Q Consensus 215 vV~ADG~~S~vR~~l~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 284 (526)
||+|||.+|.||++++.+..... ..+.+.+.. ..+ ++......|++++++++.||+++++..+++.+..
T Consensus 159 vIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~ 237 (400)
T PRK06475 159 LIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAA-DALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITG 237 (400)
T ss_pred EEECCCccHhHHhhcCCCCCCcCCceEEEEEeeh-hhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEc
Confidence 99999999999999865332221 112222211 111 1222345677888899999999876555543321
Q ss_pred C--CCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCC-CCCcEEEEccCCCcCCCCCchhHH
Q 009785 285 Q--KVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPY-PTPGALLMGDAFNMRHPLTGGGMT 361 (526)
Q Consensus 285 ~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~-~~grv~LiGDAAh~~~P~~G~G~n 361 (526)
. ....+......+.+.+.+ ..+++.+...+.. . .....|++......+| ..|||+|+|||||.++|+.|||+|
T Consensus 238 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~i~~-~--~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n 313 (400)
T PRK06475 238 GENPGEVWSKTGDKAHLKSIY-ADWNKPVLQILAA-I--DEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAA 313 (400)
T ss_pred CCCCcccCCCCCCHHHHHHHh-cCCChHHHHHHhc-C--CceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHH
Confidence 1 111122111233444433 3455555544322 2 2344677766655555 579999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHHH
Q 009785 362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFD 432 (526)
Q Consensus 362 ~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~ 432 (526)
+||+||..|+++|.. .++..+|+.|+++|+|++..++..++. ...+... .+.....|+..+.
T Consensus 314 ~aieDa~~La~~L~~-------~~~~~aL~~Ye~~R~~r~~~~~~~s~~-~~~~~~~-~~~~~~~r~~~~~ 375 (400)
T PRK06475 314 MAIEDAAALAEALDS-------DDQSAGLKRFDSVRKERIAAVAKRGQL-NRFAYHA-TGIFALGRNMLFA 375 (400)
T ss_pred HHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCC-CCHHHHHHHHHHh
Confidence 999999999999963 125689999999999999999988864 4443333 3344556776543
No 39
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=1e-38 Score=327.79 Aligned_cols=358 Identities=20% Similarity=0.242 Sum_probs=232.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC--CcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP--DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~--~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
.+||+||||||+|+++|+.|+++|++|+|+||.+... ...++..+.++++++|+++|+++.+.... ....+..++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~-~~~~~~~~~~~ 80 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREG-LVHEGTEIAFD 80 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcC-ceecceEEeeC
Confidence 4799999999999999999999999999999997532 23445568999999999999999887643 34445555555
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
+......++ ..........+.+..+...|.+.+.+. ++.++++ +++.+.+.++....|++. .+|+..+++||+||
T Consensus 81 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~~v~~~~~~~~~~~V~~~-~~g~~~~i~adlvI 156 (390)
T TIGR02360 81 GQRFRIDLK--ALTGGKTVMVYGQTEVTRDLMEAREAA-GLTTVYDADDVRLHDLAGDRPYVTFE-RDGERHRLDCDFIA 156 (390)
T ss_pred CEEEEEecc--ccCCCceEEEeCHHHHHHHHHHHHHhc-CCeEEEeeeeEEEEecCCCccEEEEE-ECCeEEEEEeCEEE
Confidence 443333333 111111111234667888899888777 5666666 477775532222245553 26765678899999
Q ss_pred EeecCCccccccccCCCCCCc-----cceeEEEEeccCCCCCCccEEEecCCCcEEEEecCCC-cEEEEEEeCCC-CCCC
Q 009785 217 VCDGCFSNLRRSLCNPKVDVP-----SCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSN-EVRCLVDIPGQ-KVPS 289 (526)
Q Consensus 217 ~ADG~~S~vR~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~-~~~~ 289 (526)
+|||.+|.||++++....... ..+.++.. ..+.......+.+.+..+.++|+.++ ..+|.+.++.. ....
T Consensus 157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (390)
T TIGR02360 157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILS---ETPPVSHELIYSNHERGFALCSMRSATRSRYYVQVPLTDKVED 233 (390)
T ss_pred ECCCCchhhHHhcCcccceeeeccCCcceEEEec---CCCCCCCceEEEeCCCceEEEeccCCCcceEEEEcCCCCChhh
Confidence 999999999999865332110 11222222 11112222344455566677777543 33455555422 2233
Q ss_pred CCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHH
Q 009785 290 ISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (526)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~ 369 (526)
+..+...+.+.+.+ ++.+.+.+... ........+.......+|..|||+|+|||||.++|+.|||+|+||+||.+
T Consensus 234 ~~~~~~~~~l~~~~----~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~ 308 (390)
T TIGR02360 234 WSDDRFWAELKRRL----PSEAAERLVTG-PSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHY 308 (390)
T ss_pred CChhHHHHHHHHhc----CchhhhhhccC-CccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHH
Confidence 33344444444433 22222222111 11112223444455678999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCC--chHHHHHHHHHHHHH
Q 009785 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASP--DEARKEMRQACFDYL 434 (526)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~--~~~~~~lr~~~~~~~ 434 (526)
|+++|..... .+.+.+|+.|+++|++++..++..|+.+..++...+ +.....++.++++++
T Consensus 309 La~~L~~~~~----~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
T TIGR02360 309 LYEALLEHYQ----EGSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELEYL 371 (390)
T ss_pred HHHHHHHHhc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Confidence 9999986421 235789999999999999999999999888876543 334444556665543
No 40
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-38 Score=326.19 Aligned_cols=337 Identities=20% Similarity=0.216 Sum_probs=223.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
+||+||||||+||++|+.|+++|++|+|+||++...+...|..++|++++.|+++|+.+.+.... .+.....++.....
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~-~~~~~~~~~~~~g~ 79 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIG-IRTRELAYFNRHGQ 79 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhC-CCCcceEEEcCCCC
Confidence 48999999999999999999999999999999877667788889999999999999998876533 22334444432221
Q ss_pred eeecCCCcC-CCCCcccceeechHHHHHHHHHHHcC-CCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEE
Q 009785 141 TQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASL-PNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTI 216 (526)
Q Consensus 141 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~a~~~-~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV 216 (526)
.....+... .......+.++|..|.+.|.+.+.+. +.+++++++ |+++.++++++. +.+.+ .+|+..+++||+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEE
Confidence 111111100 01112235689999999999988664 556788885 999987766533 33433 34555678899999
Q ss_pred EeecCCccccccccCCCCCCccceeEEEEeccC--CCC--CCccEEEec-CCCcEEEEecCCC-------cEEEEEEeCC
Q 009785 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCN--LPF--ENHGHVVLA-DPSPILFYPISSN-------EVRCLVDIPG 284 (526)
Q Consensus 217 ~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~ 284 (526)
+|||.+|.+|+++..... ...+.++..+... .+. .....++.+ +++.+.+||+.++ ..+|.+..+.
T Consensus 159 gADG~~S~vR~~l~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~ 236 (413)
T PRK07538 159 GADGIHSAVRAQLYPDEG--PPRWNGVMMWRGVTEAPPFLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRV 236 (413)
T ss_pred ECCCCCHHHhhhhcCCCC--CCcccceEEEEEeecCccccCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcC
Confidence 999999999999975431 2233444333211 111 112223443 3567888998753 3556665542
Q ss_pred CC-----CCCCCchHHHHHHHHhcCCCCCh--hhHHHHHhhhcCCCeEeccCCCC-CCCCCCCCcEEEEccCCCcCCCCC
Q 009785 285 QK-----VPSISNGEMANYLKTVVAPQIPR--EIFHSFVAAVDGGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHPLT 356 (526)
Q Consensus 285 ~~-----~~~~~~~~~~~~l~~~~~~~~~~--~l~~~~~~~~~~~~i~~~~~~~~-~~~~~~~grv~LiGDAAh~~~P~~ 356 (526)
+. ...+......+.+.+.+....++ .+.+.+ .. ...+..++.... +.++|..|||+|+|||||.|+|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~--~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~ 313 (413)
T PRK07538 237 DDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALI-RA--AEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVG 313 (413)
T ss_pred CccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHH-hc--CcceeeccccccCCCCcccCCcEEEEeeccCcCCCCC
Confidence 21 11122222222222222211111 122222 11 234455666543 467899999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 009785 357 GGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGA 410 (526)
Q Consensus 357 G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~ 410 (526)
|||+|+||+||..|+++|... .+.+++|+.|+++|++++..++..++.
T Consensus 314 GqG~~~Ai~Da~~La~~L~~~------~~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 314 SNGASQAILDARALADALAAH------GDPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred cccHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 999999999999999999863 126789999999999999999877765
No 41
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=7.7e-38 Score=323.13 Aligned_cols=354 Identities=19% Similarity=0.241 Sum_probs=237.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
.++.||+||||||+||++|+.|+++|++|+|+||++.......|..++++++++|+++|+.+.+.... .......++..
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~-~~~~~~~~~~~ 80 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRA-VFTDHLTMMDA 80 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhc-cCCcceEEEeC
Confidence 34579999999999999999999999999999999877777778889999999999999998776532 22333444432
Q ss_pred --CeeeeecCCCcC-C--CCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEE
Q 009785 138 --GNRTQISYPLEK-F--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAY 211 (526)
Q Consensus 138 --~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~ 211 (526)
+... ...+... . ........++|..+.+.|.+.+.+.++++++++ +++++.++++. +++...+|+ ++.
T Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ 154 (396)
T PRK08163 81 VDAEEV-VRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG---VTVFDQQGN--RWT 154 (396)
T ss_pred CCCCEE-EEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc---eEEEEcCCC--EEe
Confidence 2221 1111111 0 011123468999999999999988877999988 49999876664 445566775 467
Q ss_pred cCeEEEeecCCccccccccCCCCCCc--cceeEEEEeccCCCC---CCccEEEecCCCcEEEEecCCCc-EEEEEEeCCC
Q 009785 212 APLTIVCDGCFSNLRRSLCNPKVDVP--SCFVGLVLENCNLPF---ENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQ 285 (526)
Q Consensus 212 a~~vV~ADG~~S~vR~~l~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~ 285 (526)
||+||+|||.+|.+|+.+........ ..+.+.+ ...+.+. ......+.++.+.++.+|+.++. .++.+.++.+
T Consensus 155 ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~ 233 (396)
T PRK08163 155 GDALIGCDGVKSVVRQSLVGDAPRVTGHVVYRAVI-DVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSR 233 (396)
T ss_pred cCEEEECCCcChHHHhhccCCCCCccccEEEEEEE-eHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCC
Confidence 99999999999999998843211111 1122222 1111211 12234566667788889998765 3344444322
Q ss_pred CCCCC--CchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccC-CCCCCCCCCCCcEEEEccCCCcCCCCCchhHHH
Q 009785 286 KVPSI--SNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPN-RSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTV 362 (526)
Q Consensus 286 ~~~~~--~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~-~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~ 362 (526)
..... .... .+.+.+.+.. +.+.+...+.. . ..+..+.. ...+..+|..|||+|+|||||.++|++|||+|+
T Consensus 234 ~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ 308 (396)
T PRK08163 234 EQEEWGVKDGS-KEEVLSYFEG-IHPRPRQMLDK-P--TSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACM 308 (396)
T ss_pred CCcccccCCCC-HHHHHHHHcC-CChHHHHHHhc-C--CceeEccccCCCcccccccCcEEEEecccccCCcchhccHHH
Confidence 11111 1111 2223333332 23333333221 1 12222222 223567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHHH
Q 009785 363 ALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACF 431 (526)
Q Consensus 363 al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~ 431 (526)
||+||.+|+++|... ..+++++|+.|+++|++++..++..++.+.+++... .....+|+...
T Consensus 309 ai~Da~~La~~L~~~-----~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~--~~~~~~r~~~~ 370 (396)
T PRK08163 309 ALEDAVTLGKALEGC-----DGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK--GVERQVRNLLW 370 (396)
T ss_pred HHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC--CHHHHHHHHHh
Confidence 999999999999752 234688999999999999999999999999888754 34556666544
No 42
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=6.2e-38 Score=319.69 Aligned_cols=352 Identities=17% Similarity=0.138 Sum_probs=231.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC-Ce
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD-GN 139 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~-~~ 139 (526)
.||+||||||+|+++|+.|+++|++|+|+||++.......+..+.++++++|+++|+.+.+.+.. ....+..++.. +.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~-~~~~~~~~~~~~g~ 80 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHK-TRIRGASFVDRDGN 80 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhc-cCccceEEEeCCCC
Confidence 38999999999999999999999999999999876665666778999999999999998876533 23344444432 32
Q ss_pred eeeecCCCcCC--CCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 140 RTQISYPLEKF--HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 140 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
........... ......+.++|..|.+.|.+.+. .++++++++ |++++++++. |++...+|++ +++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~--~~v~i~~~~~v~~i~~~~~~---v~v~~~dg~~--~~adlvI 153 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ--PSVEYLFDDSISTLQDDGDS---VRVTFERAAA--REFDLVI 153 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc--CCcEEEeCCEEEEEEecCCe---EEEEECCCCe--EEeCEEE
Confidence 21111110001 11112346789999988876543 378999885 9999877663 5566677764 6699999
Q ss_pred EeecCCccccccccCCCCCCc--cceeEEEEe-ccCCCCCCccEEEecCCCcEEEEecCCCc-EEEEEEeCCCC--CCCC
Q 009785 217 VCDGCFSNLRRSLCNPKVDVP--SCFVGLVLE-NCNLPFENHGHVVLADPSPILFYPISSNE-VRCLVDIPGQK--VPSI 290 (526)
Q Consensus 217 ~ADG~~S~vR~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~--~~~~ 290 (526)
+|||.+|.+|+.+..+..... .......+. ....+......++++++..+.+||..++. .+.++.+.... .+..
T Consensus 154 gADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (372)
T PRK05868 154 GADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYR 233 (372)
T ss_pred ECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCcccccC
Confidence 999999999999865332211 111111111 11122222223345666778889988653 34444433211 1111
Q ss_pred CchHHHHHHHHhcCC-CCC-hhhHHHHHhhhcCC-CeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHH
Q 009785 291 SNGEMANYLKTVVAP-QIP-REIFHSFVAAVDGG-NIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDI 367 (526)
Q Consensus 291 ~~~~~~~~l~~~~~~-~~~-~~l~~~~~~~~~~~-~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da 367 (526)
..+...+.+++.+.. .+. +.+.+. +... .+........+.++|.+|||+|+|||||.++|+.|||+|+||+||
T Consensus 234 ~~~~~~~~l~~~f~~~~w~~~~l~~~----~~~~~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa 309 (372)
T PRK05868 234 DTEAQFAELQRRMAEDGWVRAQLLHY----MRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGA 309 (372)
T ss_pred ChHHHHHHHHHHHhhCCCchHHHHhh----cccCCceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHH
Confidence 222334445444431 122 333322 2211 222222344556899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHH
Q 009785 368 VILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC 430 (526)
Q Consensus 368 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~ 430 (526)
..|+++|... ..+++++|+.||+..||+..+.+.+.......|... .+....+|+.+
T Consensus 310 ~~La~~L~~~-----~~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~-~~~~~~~~~~~ 366 (372)
T PRK05868 310 YILAGELKAA-----GDDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPI-PQEEFERIVHS 366 (372)
T ss_pred HHHHHHHHhc-----CCCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCC-CHHHHHHhhcc
Confidence 9999999753 234789999999999999999998888777777655 55555555543
No 43
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=3.1e-37 Score=320.06 Aligned_cols=341 Identities=19% Similarity=0.212 Sum_probs=224.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhccccee---eeeeE-EEE
Q 009785 62 DVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQR---VFGYA-LFK 136 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G-~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~---~~~~~-~~~ 136 (526)
+|+||||||+||++|+.|+++| ++|+|+||++.....+.|..++|+++++|+++|+.+.+....... ..... .+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 699999999877666778889999999999999987776543211 11111 111
Q ss_pred CCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
++...... . ...........++|..|.+.|.+.+. ...++++ +|+++.+++++ +++...+|+ ++++|+|
T Consensus 82 ~~~~~~~~-~-~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~v~~~~~v~~i~~~~~~---~~v~~~~g~--~~~ad~v 151 (414)
T TIGR03219 82 NGSDASYL-G-ATIAPGVGQSSVHRADFLDALLKHLP---EGIASFGKRATQIEEQAEE---VQVLFTDGT--EYRCDLL 151 (414)
T ss_pred ecCcccee-e-eeccccCCcccCCHHHHHHHHHHhCC---CceEEcCCEEEEEEecCCc---EEEEEcCCC--EEEeeEE
Confidence 22111100 0 00001111235789999999988763 3456666 59999877664 455566776 3679999
Q ss_pred EEeecCCccccccccCC--CCCCccceeEEEEecc-----CC---------CC--CCccEEEecCCCcEEEEecCCCcEE
Q 009785 216 IVCDGCFSNLRRSLCNP--KVDVPSCFVGLVLENC-----NL---------PF--ENHGHVVLADPSPILFYPISSNEVR 277 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~--~~~~~~~~~~~~~~~~-----~~---------~~--~~~~~~~~~~~~~~~~~p~~~~~~~ 277 (526)
|+|||.+|.||+.+... .+.....+.++..+.. .+ +. .+...+++++++.+++||+.+++..
T Consensus 152 VgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 231 (414)
T TIGR03219 152 IGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLI 231 (414)
T ss_pred EECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEE
Confidence 99999999999988531 1111112222222111 10 00 1123467788888889999888754
Q ss_pred EE-EEeCCC--CC------CCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCC-CCCCCCCCcEEEEcc
Q 009785 278 CL-VDIPGQ--KV------PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSM-PAAPYPTPGALLMGD 347 (526)
Q Consensus 278 ~~-~~~~~~--~~------~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~-~~~~~~~grv~LiGD 347 (526)
+. +..... .. ..+..+...+.+.+.+ ..+++.+.+.+. ..... ..|+.... +.++|.+|||+|+||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~-~~~~~--~~~~~~~~~~~~~w~~grv~LiGD 307 (414)
T TIGR03219 232 NVVAFISDRSQPKPTWPSDTPWVREATQREMLDAF-AGWGDAARALLE-CIPAP--TLWALHDLAELPGYVHGRVALIGD 307 (414)
T ss_pred EEEEEEcCcccccCCCCCCCcccCccCHHHHHHHh-cCCCHHHHHHHH-hCCCC--CceeeeecccccceeeCcEEEEEc
Confidence 33 322211 00 1111222233333333 345555554433 22222 12333222 457899999999999
Q ss_pred CCCcCCCCCchhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccC
Q 009785 348 AFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSAS 418 (526)
Q Consensus 348 AAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~ 418 (526)
|||.|.|+.|||+|+||+||..|+++|..... +..+++.+|+.|+++|+|++..++..+..+.+++...
T Consensus 308 AAH~m~P~~GqGa~~AieDA~~La~~L~~~~~--~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 376 (414)
T TIGR03219 308 AAHAMLPHQGAGAGQGLEDAYFLARLLGDTEL--EAGDLPALLEAYDDVRRPRACRVQRTSREAGELYELR 376 (414)
T ss_pred ccCCCCCCcCcchHhHHHHHHHHHHHHHhhcc--CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999986421 2456889999999999999999999999998887654
No 44
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=312.53 Aligned_cols=331 Identities=21% Similarity=0.192 Sum_probs=216.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC-CcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~-~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
..+|+||||||+||++|+.|+++|++|+|+||.+... ....|..+++++++.|+++|+.+.. ... .......++...
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~-~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIG-VPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccc-cCccceEEEeCC
Confidence 5799999999999999999999999999999987532 3445677899999999999998654 222 122223333322
Q ss_pred eeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEE
Q 009785 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (526)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ 217 (526)
.......+. ....+.+..+.+.|.+.+ +++++++++ |++++++++. |++...+|+ +++||+||+
T Consensus 84 g~~~~~~~~-------~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ad~vIg 148 (386)
T PRK07236 84 GRVVQRRPM-------PQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGDR---VTARFADGR--RETADLLVG 148 (386)
T ss_pred CCEeeccCC-------CccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCe---EEEEECCCC--EEEeCEEEE
Confidence 221111111 011235667777777644 567788885 9999887764 445566776 467999999
Q ss_pred eecCCccccccccCCCCCCccceeEEEEe-----ccCCCCC------CccEEEecCCCcEEEEecCCC---------cEE
Q 009785 218 CDGCFSNLRRSLCNPKVDVPSCFVGLVLE-----NCNLPFE------NHGHVVLADPSPILFYPISSN---------EVR 277 (526)
Q Consensus 218 ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~p~~~~---------~~~ 277 (526)
|||.+|.+|+++..... ..+.+...+ ...++.. .....+.++++.++.||+.+. ..+
T Consensus 149 ADG~~S~vR~~l~~~~~---~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (386)
T PRK07236 149 ADGGRSTVRAQLLPDVR---PTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYN 225 (386)
T ss_pred CCCCCchHHHHhCCCCC---CCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEE
Confidence 99999999999843221 122222211 1122211 122345566677888887642 234
Q ss_pred EEEEeCCCCC---C-----------------CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCC
Q 009785 278 CLVDIPGQKV---P-----------------SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPY 337 (526)
Q Consensus 278 ~~~~~~~~~~---~-----------------~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 337 (526)
|.+..+.+.. . ....++..+.+.+.....+++.+...+... + ....++......++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~ 302 (386)
T PRK07236 226 WVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEAT-A--QPFVQAIFDLEVPRM 302 (386)
T ss_pred EEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhC-c--CchhhhhhcccCccc
Confidence 5554432210 0 001122333444333333445444433222 1 122234444456789
Q ss_pred CCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHcc
Q 009785 338 PTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA 417 (526)
Q Consensus 338 ~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~ 417 (526)
..|||+|+|||||.++|+.|||+|+||+||..|+++|.... .+++.+|+.|+++|++++..++..++.+..++..
T Consensus 303 ~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-----~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~ 377 (386)
T PRK07236 303 AFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-----GDIDAALAAWEAERLAVGAAIVARGRRLGARLQA 377 (386)
T ss_pred ccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998642 2367899999999999999999999887776654
Q ss_pred C
Q 009785 418 S 418 (526)
Q Consensus 418 ~ 418 (526)
.
T Consensus 378 ~ 378 (386)
T PRK07236 378 Q 378 (386)
T ss_pred c
Confidence 3
No 45
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=2.7e-35 Score=312.14 Aligned_cols=345 Identities=16% Similarity=0.159 Sum_probs=222.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC-CCcc---cceeeCcchHHHHHHcCCc--chhhcccceeee
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE-PDRI---VGELLQPGGYLKLIELGLE--DCVEQIDAQRVF 130 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~-~~~~---~g~~l~~~~~~~l~~lGl~--~~l~~~~~~~~~ 130 (526)
..+..+|+||||||+||++|+.|+++|++|+|+||++.. .... .+..++++++++|+++|++ +.+.+.......
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~ 157 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGD 157 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccc
Confidence 456799999999999999999999999999999998632 1111 3467999999999999963 444443221111
Q ss_pred ee-EEEE--CCeeeeecCCCc---CCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeC
Q 009785 131 GY-ALFK--DGNRTQISYPLE---KFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTK 203 (526)
Q Consensus 131 ~~-~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~ 203 (526)
.. .+.. .+.. ...++.. .....+..+.++|..|.+.|.+.+. ...++++ +|++++++++. |++...
T Consensus 158 ~i~~~~d~~~G~~-~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg---~~~i~~g~~V~~I~~~~d~---VtV~~~ 230 (668)
T PLN02927 158 RINGLVDGISGSW-YVKFDTFTPAASRGLPVTRVISRMTLQQILARAVG---EDVIRNESNVVDFEDSGDK---VTVVLE 230 (668)
T ss_pred eeeeeeecCCCce-EeeccccccccccCCCeEEEEeHHHHHHHHHhhCC---CCEEEcCCEEEEEEEeCCE---EEEEEC
Confidence 11 1111 1211 1111110 0011133567899999999987653 2345666 59999887774 445566
Q ss_pred CCcEEEEEcCeEEEeecCCccccccccCCCCCCccceeEEEEec--cCC-CC--CCc-cEEEecCCCcEEEEecCCCcEE
Q 009785 204 AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLEN--CNL-PF--ENH-GHVVLADPSPILFYPISSNEVR 277 (526)
Q Consensus 204 ~G~~~~i~a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~--~~~-~~--~~~-~~~~~~~~~~~~~~p~~~~~~~ 277 (526)
+|+ ++++|+||+|||++|.+|+.+...... .+.++..+. .+. +. ... ...+.+....+..++.++++..
T Consensus 231 dG~--ti~aDlVVGADG~~S~vR~~l~g~~~~---~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~ 305 (668)
T PLN02927 231 NGQ--RYEGDLLVGADGIWSKVRNNLFGRSEA---TYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQ 305 (668)
T ss_pred CCC--EEEcCEEEECCCCCcHHHHHhcCCCCC---cccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEE
Confidence 775 367999999999999999998643222 223333221 111 11 111 2344566667777788777666
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCC-CCCCCCCCcEEEEccCCCcCCCCC
Q 009785 278 CLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHPLT 356 (526)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~-~~~~~~~grv~LiGDAAh~~~P~~ 356 (526)
|+.............+...+.+.+.+. .+++.+.+.+ +..+...+..++.+.. +..+|..|||+|+|||||.|+|+.
T Consensus 306 ~~~f~~~p~~~~~~~~~~~e~L~~~f~-~w~~~v~elI-~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~ 383 (668)
T PLN02927 306 WYAFHEEPAGGADAPNGMKKRLFEIFD-GWCDNVLDLL-HATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNM 383 (668)
T ss_pred EEEEEECCccccccchhHHHHHHHHhc-cCCHHHHHHH-HhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCcc
Confidence 655433211111123345555555443 4555555543 3333333444444433 345799999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhhcC----CCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhH
Q 009785 357 GGGMTVALSDIVILRNLLRHLSN----LNDAPALCNYLESFYTLRKPVASTINTLAGALYQVF 415 (526)
Q Consensus 357 G~G~n~al~Da~~La~~L~~~~~----~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~ 415 (526)
|||+|+||+||..|+++|..... .+....++.+|+.|+++|++++..++..++....++
T Consensus 384 GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~ 446 (668)
T PLN02927 384 GQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMA 446 (668)
T ss_pred ccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986421 112345789999999999999999988876655444
No 46
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=1e-33 Score=274.69 Aligned_cols=308 Identities=20% Similarity=0.245 Sum_probs=178.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEE-EE-C
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL-FK-D 137 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~-~~-~ 137 (526)
+.+|+|||||++||++|++|+|.|++|+|+|++..+...+.+..+.-++.++|+.+|+.+.+..... +..+... .. +
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gi-p~~~~v~~~~~s 80 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGI-PLGGRVLIHGDS 80 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcC-cccceeeeecCC
Confidence 3589999999999999999999999999999987776666777777889999999999888877543 3333322 22 2
Q ss_pred Ce-eeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-E-EEEEeeCCeEEEEEEEeCCCcEEEEEcCe
Q 009785 138 GN-RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-V-TSLLEEKGTIKGVQYKTKAGEELTAYAPL 214 (526)
Q Consensus 138 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v-~~l~~~~~~v~gv~v~~~~G~~~~i~a~~ 214 (526)
|+ .....++.++ ..-..+.|..+.+.++..+...+++.+.... . ....+-+.......++..+|. ++++|+
T Consensus 81 g~~~~~~~~~~~~----~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~--~~~~dl 154 (420)
T KOG2614|consen 81 GKEVSRILYGEPD----EYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGT--TVKGDL 154 (420)
T ss_pred CCeeEecccCCch----HHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCc--EEEeeE
Confidence 22 2233333211 1112344555555555555545555554321 1 111111111112344566675 467999
Q ss_pred EEEeecCCccccccccCCCCCC--ccceeEEEEeccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCC----CCC
Q 009785 215 TIVCDGCFSNLRRSLCNPKVDV--PSCFVGLVLENCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQ----KVP 288 (526)
Q Consensus 215 vV~ADG~~S~vR~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~ 288 (526)
+|||||++|.||+.++...+.. ...++|+.+.....+. ...++...+..+...|.+.....+++..... ..+
T Consensus 155 ligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~--~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~ 232 (420)
T KOG2614|consen 155 LIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPF--GKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFA 232 (420)
T ss_pred EEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCc--ccceecccCCeEEEcccCCceEEEEEeecCCccccccc
Confidence 9999999999999998754332 2345555443333332 2223333333333333333332233322110 011
Q ss_pred -CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCC-----CCCCCCcEEEEccCCCcCCCCCchhHHH
Q 009785 289 -SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPA-----APYPTPGALLMGDAFNMRHPLTGGGMTV 362 (526)
Q Consensus 289 -~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~grv~LiGDAAh~~~P~~G~G~n~ 362 (526)
...++.+.....+.+ ..+++.+.+.+ +.++...+...+...+++ .+...++|+|+|||||+|.|+.|||+|+
T Consensus 233 ~~~e~~~l~~~~~~v~-~~~~en~~d~i-~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~ 310 (420)
T KOG2614|consen 233 PFDEPEKLKKTSLEVV-DFFPENFPDII-ELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNC 310 (420)
T ss_pred CcCCHHHHhhhHHHHH-HHhHHhHHHHH-HhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccc
Confidence 112223332222211 23344433332 333333333333333332 3445678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 009785 363 ALSDIVILRNLLRHLS 378 (526)
Q Consensus 363 al~Da~~La~~L~~~~ 378 (526)
|++|+..|+++|+++.
T Consensus 311 a~ED~~VLa~~L~~~~ 326 (420)
T KOG2614|consen 311 AFEDCVVLAECLDEAI 326 (420)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 9999999999999764
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=7.4e-32 Score=279.61 Aligned_cols=344 Identities=18% Similarity=0.152 Sum_probs=216.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
.++||+||||||+|+++|+.|+++|++|+|+||+.. ....||..++. ..++++|+.+.+.. ....+..++..+
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~lgl~~~~~~---~~i~~~~~~~p~ 110 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEFDLPLDIID---RKVTKMKMISPS 110 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhhcCcHHHHH---HHhhhheEecCC
Confidence 469999999999999999999999999999999863 45668888764 56677888765433 222333333322
Q ss_pred eeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEee--CCeEEEEEEEeC-----CCcEEEEE
Q 009785 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEE--KGTIKGVQYKTK-----AGEELTAY 211 (526)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~--~~~v~gv~v~~~-----~G~~~~i~ 211 (526)
.. ...++. ..........++|..|++.|++.+.+. +++++.++++++..+ ++....|++... +|+..+++
T Consensus 111 ~~-~v~~~~-~~~~~~~~~~v~R~~~d~~L~~~A~~~-Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~ 187 (450)
T PLN00093 111 NV-AVDIGK-TLKPHEYIGMVRREVLDSFLRERAQSN-GATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLE 187 (450)
T ss_pred ce-EEEecc-cCCCCCeEEEecHHHHHHHHHHHHHHC-CCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEE
Confidence 11 122221 011112223589999999999999887 788888888777642 222223555432 25445789
Q ss_pred cCeEEEeecCCccccccccCCCCCCccceeEEEEeccCCC------CCCccEEEec----CCCcEEEEecCCCcEEEEEE
Q 009785 212 APLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP------FENHGHVVLA----DPSPILFYPISSNEVRCLVD 281 (526)
Q Consensus 212 a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~ 281 (526)
||+||+|||.+|.+|+.++..... ...++... ...+ .++...++++ ++++.|+||.++ ..++.+.
T Consensus 188 a~~VIgADG~~S~vrr~lg~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~g 262 (450)
T PLN00093 188 VDAVIGADGANSRVAKDIDAGDYD---YAIAFQER-IKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTG 262 (450)
T ss_pred eCEEEEcCCcchHHHHHhCCCCcc---eeEEEEEE-EeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cEEEEEE
Confidence 999999999999999999875321 11222111 1111 1234456665 345789999985 4455553
Q ss_pred eCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHH
Q 009785 282 IPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMT 361 (526)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n 361 (526)
.... ..+..+..+.+.+.....+. ..+...+...+....+..++..+|++|+|||||.++|++|+|++
T Consensus 263 ~~~~---~~~~~~~~~~l~~~~~~~l~---------~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~ 330 (450)
T PLN00093 263 TVVN---KPAIKKYQRATRNRAKDKIA---------GGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIY 330 (450)
T ss_pred EccC---CCChHHHHHHHHHHhhhhcC---------CCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccccHH
Confidence 2211 11112222233221110000 00001122222222345577889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHH
Q 009785 362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC 430 (526)
Q Consensus 362 ~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~ 430 (526)
.||.++..+++.+.+....++.......|+.|++..+.........+..+.++|..+ ++..+.+-+.|
T Consensus 331 ~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~-~~~~~~~~~~~ 398 (450)
T PLN00093 331 FAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRS-NPAREAFVEMC 398 (450)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHh
Confidence 999999999999986532221111235689999988877777777888888888764 66655555544
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=6.3e-31 Score=270.25 Aligned_cols=333 Identities=20% Similarity=0.261 Sum_probs=211.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCe-
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN- 139 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~- 139 (526)
|||+||||||+|+++|+.|+++|++|+|+||+. .....+|..+++. .++++|+.+.+.. ....+..++....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~~---~l~~l~i~~~~~~---~~~~~~~~~~~~~~ 73 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPPC---LIEEFDIPDSLID---RRVTQMRMISPSRV 73 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCHh---hhhhcCCchHHHh---hhcceeEEEcCCCc
Confidence 699999999999999999999999999999983 3345688888764 5677888765433 2334444443322
Q ss_pred eeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEe----CCCcEEEEEcCeE
Q 009785 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKT----KAGEELTAYAPLT 215 (526)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~----~~G~~~~i~a~~v 215 (526)
......+. .......++|..|++.|.+.+.+. +++++.++|+++.++++.+ .+++.+ .+|+..+++||+|
T Consensus 74 ~~~~~~~~----~~~~~~~~~r~~fd~~L~~~a~~~-G~~v~~~~v~~v~~~~~~~-~v~~~~~~~~~~~~~~~i~a~~V 147 (388)
T TIGR02023 74 PIKVTIPS----EDGYVGMVRREVFDSYLRERAQKA-GAELIHGLFLKLERDRDGV-TLTYRTPKKGAGGEKGSVEADVV 147 (388)
T ss_pred eeeeccCC----CCCceEeeeHHHHHHHHHHHHHhC-CCEEEeeEEEEEEEcCCeE-EEEEEeccccCCCcceEEEeCEE
Confidence 21122110 011112589999999999999887 7888877898988776654 355553 2344457899999
Q ss_pred EEeecCCccccccccCCCCCCccceeEEE--Eecc--CC-CCCCccEEEec----CCCcEEEEecCCCcEEEEEEeCCCC
Q 009785 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLV--LENC--NL-PFENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQK 286 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~~~~~~~~~--~~~~--~~-~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~ 286 (526)
|+|||.+|.+|+.++.+.... ...++. +... .. ..++...++++ ++++.|++|.++ ..++......
T Consensus 148 I~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~vg~~~~~-- 222 (388)
T TIGR02023 148 IGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIAVGTGTGT-- 222 (388)
T ss_pred EECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeEEeEEECC--
Confidence 999999999999998753211 111221 1101 01 12233445543 346789999975 3444443211
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHH
Q 009785 287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD 366 (526)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~D 366 (526)
...+.++..+.+.+... +... + ... ......|. .+..+|..+|++++|||||+++|++|+|++.||.+
T Consensus 223 -~~~~~~~~~~~l~~~~~--~~~~--~----~~~-~~~~~ip~--~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~s 290 (388)
T TIGR02023 223 -HGFDAKQLQANLRRRAG--LDGG--Q----TIR-REAAPIPM--KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKS 290 (388)
T ss_pred -CCCCHHHHHHHHHHhhC--CCCc--e----Eee-eeeEeccc--cccccccCCCEEEEeccccCcCCcccccHHHHHHH
Confidence 11123333334433221 1000 0 000 01112222 34466788999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHH
Q 009785 367 IVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQ 428 (526)
Q Consensus 367 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~ 428 (526)
+..+++.+.+....++ .+.|+.|+++.+............+..++..+ +.....+-+
T Consensus 291 g~~aa~~i~~~l~~~~----~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 347 (388)
T TIGR02023 291 GQMAAQAIAEYLQNGD----ATDLRHYERKFMKLYGTTFRVLRVLQMVYYRS-DRRREVFVE 347 (388)
T ss_pred HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHH
Confidence 9999999987643222 46799999999887766666666666666444 444444333
No 49
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=7.8e-31 Score=269.57 Aligned_cols=342 Identities=17% Similarity=0.173 Sum_probs=212.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
+||+||||||+|+++|+.|+++|++|+|+||+.. ....||..+.+ ..++++|+.+.+.. ....+..++..+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~-~~~~cg~~i~~---~~l~~~g~~~~~~~---~~i~~~~~~~p~~~ 73 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD-NAKPCGGAIPL---CMVDEFALPRDIID---RRVTKMKMISPSNI 73 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hhHhhccCchhHHH---hhhceeEEecCCce
Confidence 5899999999999999999999999999999864 34567777754 56778888755433 12233333332211
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEe--eCCeEEEEEEEeCC-----CcEEEEEcC
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLE--EKGTIKGVQYKTKA-----GEELTAYAP 213 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~--~~~~v~gv~v~~~~-----G~~~~i~a~ 213 (526)
...+... .........++|..|++.|.+.+.+. +++++.++++++.. +.+...+|++...+ |+..+++|+
T Consensus 74 -~~~~~~~-~~~~~~~~~v~R~~~d~~L~~~a~~~-G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~ 150 (398)
T TIGR02028 74 -AVDIGRT-LKEHEYIGMLRREVLDSFLRRRAADA-GATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVD 150 (398)
T ss_pred -EEEeccC-CCCCCceeeeeHHHHHHHHHHHHHHC-CcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeC
Confidence 1111110 01111123589999999999999887 78998888777653 22333446554433 555578999
Q ss_pred eEEEeecCCccccccccCCCCCCccceeEEEEeccCCC------CCCccEEEec----CCCcEEEEecCCCcEEEEEEeC
Q 009785 214 LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP------FENHGHVVLA----DPSPILFYPISSNEVRCLVDIP 283 (526)
Q Consensus 214 ~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~ 283 (526)
+||+|||.+|.+|+.++.+.... ...+... ...+ .+....++++ ++++.|+||.++ ..++.+...
T Consensus 151 ~VIgADG~~S~v~~~~g~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~~VG~g~~ 225 (398)
T TIGR02028 151 AVIGADGANSRVAKEIDAGDYSY---AIAFQER-IRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTV 225 (398)
T ss_pred EEEECCCcchHHHHHhCCCCcce---EEEEEEE-eeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eEEEEEEeC
Confidence 99999999999999998653211 1111111 1111 1234455665 345899999985 344544321
Q ss_pred CCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHH
Q 009785 284 GQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVA 363 (526)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~a 363 (526)
. .....+++.+.+... .+..+. ......+...+....+.+++..+|++|+|||||+++|++|+|++.|
T Consensus 226 ~---~~~~~~~~~~~l~~~----~~~~~~-----~~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A 293 (398)
T TIGR02028 226 A---AKPEIKRLQSGIRAR----AAGKVA-----GGRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFA 293 (398)
T ss_pred C---CCccHHHHHHhhhhh----hhhccC-----CCcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHH
Confidence 1 111112222222211 000000 0000111222222223456778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHccCCchHHHHHHHHH
Q 009785 364 LSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQAC 430 (526)
Q Consensus 364 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~ 430 (526)
|.++..+++.+.+....++.......|+.|++..+.........+..+.++|.. .+...+.+-+.+
T Consensus 294 ~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 359 (398)
T TIGR02028 294 AKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYR-SNAGREAFVEMC 359 (398)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHh
Confidence 999999999998654322211224678999998887777777777788888876 466666655554
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=2.9e-29 Score=248.43 Aligned_cols=285 Identities=25% Similarity=0.253 Sum_probs=181.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC-Ce
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD-GN 139 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~-~~ 139 (526)
|||+||||||+|+++|+.|+++|++|+|+||+.......++..+.+++++.+...+.. ... ......++.. ++
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-----~~~~~~~~~~~~~ 74 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-IVN-----LVRGARFFSPNGD 74 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-hhh-----heeeEEEEcCCCc
Confidence 6999999999999999999999999999999987666667888888888777655431 111 1112222222 22
Q ss_pred eeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEe
Q 009785 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (526)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~A 218 (526)
.. ..+. .....+.++|..+.+.|.+.+.+. +++++++ +++++..+++.+. +.+ .++. .++++|+||+|
T Consensus 75 ~~--~~~~----~~~~~~~i~r~~l~~~l~~~~~~~-gv~~~~~~~v~~~~~~~~~~~-~~~--~~~~-~~~~a~~vv~a 143 (295)
T TIGR02032 75 SV--EIPI----ETELAYVIDRDAFDEQLAERAQEA-GAELRLGTTVLDVEIHDDRVV-VIV--RGGE-GTVTAKIVIGA 143 (295)
T ss_pred EE--Eecc----CCCcEEEEEHHHHHHHHHHHHHHc-CCEEEeCcEEeeEEEeCCEEE-EEE--cCcc-EEEEeCEEEEC
Confidence 21 1111 123456789999999999999876 7888877 5899887777542 333 2222 35789999999
Q ss_pred ecCCccccccccCCCCCCccceeEEEEe-ccC--CCCCCccEEEec----CCCcEEEEecCCCcEEEEEEeCCCCCCCCC
Q 009785 219 DGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCN--LPFENHGHVVLA----DPSPILFYPISSNEVRCLVDIPGQKVPSIS 291 (526)
Q Consensus 219 DG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 291 (526)
||.+|.+|+.++....... ...++... ..+ ...++...++.. ++++.|++|++++...+.+...... .
T Consensus 144 ~G~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~ 218 (295)
T TIGR02032 144 DGSRSIVAKKLGLRKEPRE-LGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----E 218 (295)
T ss_pred CCcchHHHHhcCCCCCCcc-eeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----C
Confidence 9999999998876432211 12222111 111 112233334443 3578899999988766665543322 1
Q ss_pred chHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccC-CCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHH
Q 009785 292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPN-RSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVIL 370 (526)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~-~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~L 370 (526)
..+..+.+++++. ..|. +. . .+......++. ......++..+|++++|||||.++|++|||||+||+||..+
T Consensus 219 ~~~~~~~~~~~~~-~~~~-l~----~-~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~a 291 (295)
T TIGR02032 219 GEDLKKYLKDFLA-RRPE-LK----D-AETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVA 291 (295)
T ss_pred CCCHHHHHHHHHH-hCcc-cc----c-CcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHH
Confidence 2233444444331 1111 10 0 00011111111 12245577899999999999999999999999999999999
Q ss_pred HHHH
Q 009785 371 RNLL 374 (526)
Q Consensus 371 a~~L 374 (526)
++.|
T Consensus 292 a~~~ 295 (295)
T TIGR02032 292 AEVI 295 (295)
T ss_pred HhhC
Confidence 9864
No 51
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.97 E-value=3.3e-28 Score=250.25 Aligned_cols=319 Identities=23% Similarity=0.283 Sum_probs=205.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc-eeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG-ELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g-~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
++|||+||||||||++||+.|++.|++|+|+||+..+..+.++ ..+.+..++.+......+ + ...+.+..++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~-i----~~~v~~~~~~~~ 76 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE-I----ERKVTGARIYFP 76 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh-h----heeeeeeEEEec
Confidence 4699999999999999999999999999999999888877765 777777766543222211 1 123444444444
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
+.......+ ...++.++|..|++.|.+.+.+. +++++.++ ++++..+++.+..+.. . +. .+++|++||
T Consensus 77 ~~~~~~~~~------~~~~y~v~R~~fd~~La~~A~~a-Gae~~~~~~~~~~~~~~~~~~~~~~-~--~~-~e~~a~~vI 145 (396)
T COG0644 77 GEKVAIEVP------VGEGYIVDRAKFDKWLAERAEEA-GAELYPGTRVTGVIREDDGVVVGVR-A--GD-DEVRAKVVI 145 (396)
T ss_pred CCceEEecC------CCceEEEEhHHhhHHHHHHHHHc-CCEEEeceEEEEEEEeCCcEEEEEE-c--CC-EEEEcCEEE
Confidence 333333322 14578999999999999999998 78888885 9999988775542322 2 22 568899999
Q ss_pred EeecCCccccccccCCCCCCccceeEEEEeccCCCC-CCccEEE-----ecCCCcEEEEecCCCcEEEEEEeCCCCCCCC
Q 009785 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPF-ENHGHVV-----LADPSPILFYPISSNEVRCLVDIPGQKVPSI 290 (526)
Q Consensus 217 ~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 290 (526)
+|||.+|.+++.++.. ...+..+..........|. ....++. ....++.|+||.+++..++.+.+.... +..
T Consensus 146 ~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~-~~~ 223 (396)
T COG0644 146 DADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-PSL 223 (396)
T ss_pred ECCCcchHHHHHhCCC-CCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-cCC
Confidence 9999999999999987 2222222222222223332 2222222 224578999999999888888765433 222
Q ss_pred CchHHHHHHHHhcC-CCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHH
Q 009785 291 SNGEMANYLKTVVA-PQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (526)
Q Consensus 291 ~~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~ 369 (526)
... . +.++++.. +...+.+.. ....+ ......|.......++..++++++||||.+++|++|+|+..||..+..
T Consensus 224 ~~~-~-~~l~~f~~~~~~~~~~~~--~~~~~-~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~ 298 (396)
T COG0644 224 SPF-L-ELLERFKEHPAIRKLLLG--GKILE-YAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKL 298 (396)
T ss_pred Cch-H-HHHHHHHhCcccchhccC--CceEE-EeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHH
Confidence 221 1 33333221 111111100 00000 011223333322222778899999999999999999999999999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHH
Q 009785 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTIN 405 (526)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~ 405 (526)
+++.+......+ .+.|..|++..+.......
T Consensus 299 Aa~~i~~~~~~~-----~~~l~~Y~~~~~~~~~~~~ 329 (396)
T COG0644 299 AAEAIAEALEGG-----EEALAEYERLLRKSLARED 329 (396)
T ss_pred HHHHHHHHHHcC-----hhHHHHHHHHHHHHHHHHH
Confidence 999999753211 4567778888776554443
No 52
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=1.8e-29 Score=278.45 Aligned_cols=322 Identities=18% Similarity=0.166 Sum_probs=204.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCCcccceeeCcchHHHHHHcC--CcchhhcccceeeeeeEEEE
Q 009785 61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELG--LEDCVEQIDAQRVFGYALFK 136 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~--G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lG--l~~~l~~~~~~~~~~~~~~~ 136 (526)
.+|+||||||+||++|+.|+++ |++|+|+||++.......|..+.+++++.|+.++ +.+.+... ........++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~-~~~~~~~~~~~ 79 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDA-FNHWDDIDVHF 79 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHh-cccCCceEEEE
Confidence 3799999999999999999998 8999999999866656678889999999888776 22222211 01112222333
Q ss_pred CCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
.+.... . .......++|..|.+.|.+.+.+. ++++++++ ++++.+ ...++|+|
T Consensus 80 ~g~~~~-~-------~g~~~~~i~R~~L~~~L~e~a~~~-GV~i~~g~~v~~i~~-----------------~~~~~D~V 133 (765)
T PRK08255 80 KGRRIR-S-------GGHGFAGIGRKRLLNILQARCEEL-GVKLVFETEVPDDQA-----------------LAADADLV 133 (765)
T ss_pred CCEEEE-E-------CCeeEecCCHHHHHHHHHHHHHHc-CCEEEeCCccCchhh-----------------hhcCCCEE
Confidence 332211 0 111123578999999999999987 78988885 554321 11359999
Q ss_pred EEeecCCccccccccCCCCCC-ccceeEEEEeccCCCCCCccEE-EecCCCc--EEEEecCCCcEEEEEEeCCC-----C
Q 009785 216 IVCDGCFSNLRRSLCNPKVDV-PSCFVGLVLENCNLPFENHGHV-VLADPSP--ILFYPISSNEVRCLVDIPGQ-----K 286 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~p~~~~~~~~~~~~~~~-----~ 286 (526)
|+|||.+|.+|+++....... ......+............... .....++ ...||++++...+++.++.+ .
T Consensus 134 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 213 (765)
T PRK08255 134 IASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKVFDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAG 213 (765)
T ss_pred EEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCcccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcC
Confidence 999999999999874311110 1111111111111111111111 1112232 34578887777777665422 1
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEecc-CCCCCCCCCCCCc----EEEEccCCCcCCCCCchhHH
Q 009785 287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMP-NRSMPAAPYPTPG----ALLMGDAFNMRHPLTGGGMT 361 (526)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~-~~~~~~~~~~~gr----v~LiGDAAh~~~P~~G~G~n 361 (526)
.+.++.++..+.+.+.+....+.. ..+ ..........|. .......+|..|| |+|+|||||.++|+.|||+|
T Consensus 214 ~~~~~~~~~~~~l~~~f~~~~~~~--~li-~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~ 290 (765)
T PRK08255 214 LDEMSQEESIAFCEKLFADYLDGH--PLM-SNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTK 290 (765)
T ss_pred CccCCHHHHHHHHHHHhHHhcCCC--ccc-ccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHH
Confidence 223345555566665544333321 111 111110111122 2233467899999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhHcc
Q 009785 362 VALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAGALYQVFSA 417 (526)
Q Consensus 362 ~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~~~ 417 (526)
+||+||..|+++|.... .+++++|+.|+++|++++..++..++.+..+|..
T Consensus 291 ~aieDa~~La~~L~~~~-----~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~ 341 (765)
T PRK08255 291 LALEDAIELARCLHEHP-----GDLPAALAAYEEERRVEVLRIQNAARNSTEWFEN 341 (765)
T ss_pred HHHHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Confidence 99999999999998642 2578999999999999999999999877766654
No 53
>PRK11445 putative oxidoreductase; Provisional
Probab=99.97 E-value=2.3e-28 Score=247.68 Aligned_cols=308 Identities=17% Similarity=0.178 Sum_probs=182.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC----CcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEE
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP----DRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~----~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 136 (526)
+||+||||||+|+++|+.|+++ ++|+|+||++... ..++|..+++++.+.|+++|+................
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~--- 77 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK--- 77 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee---
Confidence 7999999999999999999999 9999999987532 3458999999999999999986322111110000000
Q ss_pred CCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
.......... ......+.++|..|++.|.+.+ +. ++++++++ ++++.++++.+. |++ ..+|+..+++||+|
T Consensus 78 ---~~~~~~~~~~-~~~~~~~~i~R~~~~~~L~~~~-~~-gv~v~~~~~v~~i~~~~~~~~-v~~-~~~g~~~~i~a~~v 149 (351)
T PRK11445 78 ---TIDLANSLTR-NYQRSYINIDRHKFDLWLKSLI-PA-SVEVYHNSLCRKIWREDDGYH-VIF-RADGWEQHITARYL 149 (351)
T ss_pred ---Eecccccchh-hcCCCcccccHHHHHHHHHHHH-hc-CCEEEcCCEEEEEEEcCCEEE-EEE-ecCCcEEEEEeCEE
Confidence 0000000000 0111234689999999998854 33 68898885 888887766543 443 24565556889999
Q ss_pred EEeecCCccccccccCCCCCCccceeEEEEe-ccCCCCCCccEEEec---CCCcEEEEecCCCcEEEEEEeCCCCCCCCC
Q 009785 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE-NCNLPFENHGHVVLA---DPSPILFYPISSNEVRCLVDIPGQKVPSIS 291 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 291 (526)
|+|||.+|.+|++++.... ...+.++..+ ....+.+ ....++. .+++.|.+|.++. ..+....+... ....
T Consensus 150 V~AdG~~S~vr~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~W~~p~~~~-~~~g~~~~~~~-~~~~ 224 (351)
T PRK11445 150 VGADGANSMVRRHLYPDHQ--IRKYVAIQQWFAEKHPVP-FYSCIFDNEITDCYSWSISKDGY-FIFGGAYPMKD-GRER 224 (351)
T ss_pred EECCCCCcHHhHHhcCCCc--hhhEEEEEEEecCCCCCC-CcceEEeccCCCceEEEeCCCCc-EEecccccccc-hHHH
Confidence 9999999999999875422 1223333222 1111111 1112222 2356677787553 22211112110 0000
Q ss_pred chHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCC--CCCCcEEEEccCCCcCCCCCchhHHHHHHHHHH
Q 009785 292 NGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAP--YPTPGALLMGDAFNMRHPLTGGGMTVALSDIVI 369 (526)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~--~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~ 369 (526)
.+.+.+.+.+ ....+.+.+. .. ...+........ +..+|++|||||||.++|++|+|++.|+.|+..
T Consensus 225 ~~~l~~~l~~-~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~ 293 (351)
T PRK11445 225 FETLKEKLSA-FGFQFGKPVK--------TE--ACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARI 293 (351)
T ss_pred HHHHHHHHHh-cccccccccc--------cc--cccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHH
Confidence 0111122221 1101111100 00 001111111122 335899999999999999999999999999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHH
Q 009785 370 LRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTI 404 (526)
Q Consensus 370 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~ 404 (526)
|++.|.+.. +..++.|++..+...-.+
T Consensus 294 la~~l~~~~--------~~~~~~y~~~~~~~~~~~ 320 (351)
T PRK11445 294 LSEVLNKQP--------EKLNTAYWRKTRKLRLKL 320 (351)
T ss_pred HHHHHHhcc--------cchHHHHHHHHHHHHHHH
Confidence 999997532 457889998887766433
No 54
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.96 E-value=8.5e-28 Score=231.46 Aligned_cols=365 Identities=18% Similarity=0.174 Sum_probs=255.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCCC--CC-------cccceeeCcchHHHHHHcCCcchhhcc
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSE--PD-------RIVGELLQPGGYLKLIELGLEDCVEQI 124 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~----G~~V~l~Er~~~~--~~-------~~~g~~l~~~~~~~l~~lGl~~~l~~~ 124 (526)
...|||+||||||+|+++|..|... ..+|.|+|-...+ .+ .-+-..++|+....++.+|.|+.+...
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~ 113 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHD 113 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence 3479999999999999999999864 4799999987432 11 112245789999999999999998887
Q ss_pred cceeeeeeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHH--HHHHcCCCeEEEece-EEEEEe-------eCCe
Q 009785 125 DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLR--EKAASLPNVRLEQGT-VTSLLE-------EKGT 194 (526)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~~a~~~~~v~i~~~~-v~~l~~-------~~~~ 194 (526)
...+..+..+|++-....+.+..+.... ..++.+....+...|+ +...+..++++.+.+ +..+.. +++.
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~d~~~~-d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~ 192 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDHDNVGI-DMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM 192 (481)
T ss_pred ccccccceeeecccchhhhhhccccccc-cceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence 7777777777776555555555443322 3456777777777777 455556789998874 666543 2232
Q ss_pred EEEEEEEeCCCcEEEEEcCeEEEeecCCccccccccCCCCCCccceeEEEEe---ccCCCCCCccEEEecCCCcEEEEec
Q 009785 195 IKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLE---NCNLPFENHGHVVLADPSPILFYPI 271 (526)
Q Consensus 195 v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ 271 (526)
-..+...||. .+..|++|+|||.+|.+|+..+++..+..+...+++.. .++......++..+.+.|++.+.|+
T Consensus 193 --~~~i~l~dg~--~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl 268 (481)
T KOG3855|consen 193 --WFHITLTDGI--NFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPL 268 (481)
T ss_pred --eEEEEeccCc--eeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeeccc
Confidence 2455667787 46699999999999999999999888777666666654 3334555666777788899999999
Q ss_pred CCCcEEEEEEeCCC---CCCCCCchHHHHHHHHhcCCCCCh-hh----H----------HHHHhhhc-------------
Q 009785 272 SSNEVRCLVDIPGQ---KVPSISNGEMANYLKTVVAPQIPR-EI----F----------HSFVAAVD------------- 320 (526)
Q Consensus 272 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~-~l----~----------~~~~~~~~------------- 320 (526)
+++-....|...++ .+..+.++...+.+...+.-+.+. .+ . ..+.....
T Consensus 269 ~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~ 348 (481)
T KOG3855|consen 269 SDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFE 348 (481)
T ss_pred ccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEE
Confidence 99877777765432 123344455555554433211110 00 0 01111110
Q ss_pred --CCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhc
Q 009785 321 --GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRK 398 (526)
Q Consensus 321 --~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~ 398 (526)
...-..+|+....++.|..+|+.|+|||||.+||+.|||.|++..|+..|...|..+...+-.-....-|+-|+++|.
T Consensus 349 v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~ 428 (481)
T KOG3855|consen 349 VGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERL 428 (481)
T ss_pred ecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHh
Confidence 001135777777888999999999999999999999999999999999999999875332222333578999999999
Q ss_pred chhHHHHHHHHHHHHhHccCCchHHHHHHH
Q 009785 399 PVASTINTLAGALYQVFSASPDEARKEMRQ 428 (526)
Q Consensus 399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~lr~ 428 (526)
+....+......+.++|..+ .+....+|.
T Consensus 429 ~~N~~ll~~vdkl~klY~t~-~p~vV~~rt 457 (481)
T KOG3855|consen 429 QHNYVLLGAVDKLHKLYATS-APPVVLLRT 457 (481)
T ss_pred hhcchHHHHHHHHHHHHhcc-CCcEEEEec
Confidence 98888888888888888775 333333333
No 55
>PRK10015 oxidoreductase; Provisional
Probab=99.95 E-value=5.4e-25 Score=228.04 Aligned_cols=360 Identities=19% Similarity=0.184 Sum_probs=200.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc-ccceeeCcchHHHHHHcCCc--chhhcccceeeeeeEEEE
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-IVGELLQPGGYLKLIELGLE--DCVEQIDAQRVFGYALFK 136 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~-~~g~~l~~~~~~~l~~lGl~--~~l~~~~~~~~~~~~~~~ 136 (526)
+||||||||||+|+++|+.|+++|++|+|+||.+.+... .+|..+.....+.+.. ++. ..++.. .......+..
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~--~~~~~~~~~~ 81 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERK--VTREKISFLT 81 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCcccc--ccceeEEEEe
Confidence 599999999999999999999999999999998766544 2455555444433310 221 111110 0111122222
Q ss_pred CCeeeeecCCCcCCC-CCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCe
Q 009785 137 DGNRTQISYPLEKFH-SDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPL 214 (526)
Q Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~ 214 (526)
.+......+...... ....++.+.|..|++.|.+.+++. +++++.+ +|+++..+++++.++. . ++ .+++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~-Gv~i~~~~~V~~i~~~~~~v~~v~--~-~~--~~i~A~~ 155 (429)
T PRK10015 82 EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQA-GAQFIPGVRVDALVREGNKVTGVQ--A-GD--DILEANV 155 (429)
T ss_pred CCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCEEEEEE--e-CC--eEEECCE
Confidence 322222333222111 122467899999999999999887 7888888 5889887777665443 2 22 2578999
Q ss_pred EEEeecCCccccccccCCCCCCcc-ceeEEEEeccCCCC------------CCccEEEecC--CC---cEEEEecCCCcE
Q 009785 215 TIVCDGCFSNLRRSLCNPKVDVPS-CFVGLVLENCNLPF------------ENHGHVVLAD--PS---PILFYPISSNEV 276 (526)
Q Consensus 215 vV~ADG~~S~vR~~l~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~--~~---~~~~~p~~~~~~ 276 (526)
||+|||.+|.+++.++........ ...++... ..++. ....+++.+. ++ ..|+|+. .+..
T Consensus 156 VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~-~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~-~d~v 233 (429)
T PRK10015 156 VILADGVNSMLGRSLGMVPASDPHHYAVGVKEV-IGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTN-KDSI 233 (429)
T ss_pred EEEccCcchhhhcccCCCcCCCcCeEEEEEEEE-EeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEc-CCcE
Confidence 999999999999998764322221 12232211 11211 1122233321 11 2355554 3445
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhh-cCCCeEeccCCCC-CCCCCCCCcEEEEccCCCcCCC
Q 009785 277 RCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAV-DGGNIKTMPNRSM-PAAPYPTPGALLMGDAFNMRHP 354 (526)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~~~~-~~~~~~~grv~LiGDAAh~~~P 354 (526)
++.+.+.-..... ...+..+++.++.. .+.+.+.+.... .+..-...|.... ..++...+|++++||||+.++|
T Consensus 234 ~vGv~~~~~~~~~-~~~~~~~~l~~~~~---~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p 309 (429)
T PRK10015 234 SLGLVCGLGDIAH-AQKSVPQMLEDFKQ---HPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLN 309 (429)
T ss_pred EEEEEEehhhhcc-CCCCHHHHHHHHhh---ChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccc
Confidence 6555332111111 11223333333211 122222221110 0001122232211 2345678999999999999985
Q ss_pred --CCchhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhHccCC--chHHHHHHHH
Q 009785 355 --LTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV-ASTINTLAGALYQVFSASP--DEARKEMRQA 429 (526)
Q Consensus 355 --~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~a~~~~~~~~~~~--~~~~~~lr~~ 429 (526)
++|+||+.||.++..+|+.+.+....++ -....|+.|++..+.. ..+-....+.+..++..+. +.....+.+.
T Consensus 310 ~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d--~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (429)
T PRK10015 310 LGFTVRGMDLAIASAQAAATTVIAAKERAD--FSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADI 387 (429)
T ss_pred cCccccchhHHHHHHHHHHHHHHHHHhcCC--CccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCccHHHHHHHHHHHH
Confidence 6999999999999999999886543222 1245678999887755 3333445555555554320 1223334444
Q ss_pred HHHHHhc
Q 009785 430 CFDYLSL 436 (526)
Q Consensus 430 ~~~~~~~ 436 (526)
..+++..
T Consensus 388 ~~~~~~~ 394 (429)
T PRK10015 388 MNDMFTI 394 (429)
T ss_pred HHHhccc
Confidence 4444443
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.94 E-value=3.2e-24 Score=220.97 Aligned_cols=306 Identities=20% Similarity=0.184 Sum_probs=180.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeee-eEEEECCee
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG-YALFKDGNR 140 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~-~~~~~~~~~ 140 (526)
||+||||||+|+++|+.|++.|++|+|+|+++.... .....+... .++++++.+.+.. ...+ ..+...+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 72 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-NHTYGVWDD---DLSDLGLADCVEH----VWPDVYEYRFPKQP 72 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-CccccccHh---hhhhhchhhHHhh----cCCCceEEecCCcc
Confidence 799999999999999999999999999999864321 111222222 2344554333221 1111 111111111
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeec
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG 220 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG 220 (526)
.. .......+++..|.+.|.+.+.+. +++++.++|+++..+++.. +.+...+|+ +++|++||+|||
T Consensus 73 ~~---------~~~~~~~i~~~~l~~~l~~~~~~~-gv~~~~~~v~~i~~~~~~~--~~v~~~~g~--~~~a~~VI~A~G 138 (388)
T TIGR01790 73 RK---------LGTAYGSVDSTRLHEELLQKCPEG-GVLWLERKAIHAEADGVAL--STVYCAGGQ--RIQARLVIDARG 138 (388)
T ss_pred hh---------cCCceeEEcHHHHHHHHHHHHHhc-CcEEEccEEEEEEecCCce--eEEEeCCCC--EEEeCEEEECCC
Confidence 10 011223588999999999999887 7888877888887663332 334455664 477999999999
Q ss_pred CCccccccccCCCCCCccceeEEEEeccCCCCCCccEEEec----C----------CCcEEEEecCCCcEEEEEEeCCCC
Q 009785 221 CFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLA----D----------PSPILFYPISSNEVRCLVDIPGQK 286 (526)
Q Consensus 221 ~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~p~~~~~~~~~~~~~~~~ 286 (526)
.+|.+++........ ...+.|+.+.-...+.+....+++. . ++++|++|.+++...+...... .
T Consensus 139 ~~s~~~~~~~~~~~~-~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~-~ 216 (388)
T TIGR01790 139 FGPLVQYVRFPLNVG-FQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA-D 216 (388)
T ss_pred CchhcccccCCCCce-EEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecccc-C
Confidence 999775443221111 1235555543221111111111111 1 1267888998876544322111 1
Q ss_pred CCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHH
Q 009785 287 VPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSD 366 (526)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~D 366 (526)
.+..+.+++++.+.+.+... ..... .+.......+|..... ++..+|++++|||||+++|++|+|++.+++|
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~-g~~~~-----~i~~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~ 288 (388)
T TIGR01790 217 RPALPRDRLRQRILARLNAQ-GWQIK-----TIEEEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSD 288 (388)
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCeee-----EEEeeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHH
Confidence 12334556666665543211 10000 0111122334443322 2367899999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHH
Q 009785 367 IVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVAST 403 (526)
Q Consensus 367 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 403 (526)
+..+++.|.+....+ .+.+++.|++..+++..+
T Consensus 289 a~~la~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 289 APGLAAAIAQALCQS----SELATAAWDGLWPTERRR 321 (388)
T ss_pred HHHHHHHHHHHhccC----HHHHHHHHHHhchHHHHH
Confidence 999999998754312 357888887766665544
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.94 E-value=1.1e-23 Score=218.59 Aligned_cols=324 Identities=21% Similarity=0.206 Sum_probs=182.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-cceeeCcchHHHH-HHcCCcchhhcccceeeeeeEEEEC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VGELLQPGGYLKL-IELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~-~g~~l~~~~~~~l-~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
+|||+||||||+|+++|+.|+++|++|+|+||.+.+..+. +|..+.....+.+ ..+.....++.. .......+...
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~--~~~~~~~~~~~ 82 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERL--ITHEKLAFMTE 82 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccce--eeeeeEEEEcC
Confidence 5999999999999999999999999999999997665443 3444544443322 111000001110 00111222222
Q ss_pred CeeeeecCCCcC-CCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeE
Q 009785 138 GNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLT 215 (526)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~v 215 (526)
.......+.... ......++.+.|..|++.|.+.+++. +++++.+ +|++++.+++.+.+++ .+|. +++|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~-Gv~i~~~~~V~~i~~~~g~v~~v~---~~g~--~i~A~~V 156 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEA-GAQLITGIRVDNLVQRDGKVVGVE---ADGD--VIEAKTV 156 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEeCCEEEEEE---cCCc--EEECCEE
Confidence 222222222111 11223467889999999999999887 7899888 4999887777654433 3444 4779999
Q ss_pred EEeecCCccccccccCCCCCCccceeEEEEec-cCCC------------CCCccEEEecC--CC---cEEEEecCCCcEE
Q 009785 216 IVCDGCFSNLRRSLCNPKVDVPSCFVGLVLEN-CNLP------------FENHGHVVLAD--PS---PILFYPISSNEVR 277 (526)
Q Consensus 216 V~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~--~~---~~~~~p~~~~~~~ 277 (526)
|+|||.+|.+++.++....... ....+.... ..++ .....+++.+. ++ ..|+|+. .+...
T Consensus 157 I~A~G~~s~l~~~lgl~~~~~~-~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~-~~~~s 234 (428)
T PRK10157 157 ILADGVNSILAEKLGMAKRVKP-TDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTN-ENTLS 234 (428)
T ss_pred EEEeCCCHHHHHHcCCCCCCCC-cEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEc-CCeEE
Confidence 9999999999999886532222 222221110 1111 11122333332 11 2355653 34444
Q ss_pred EEEEeCCCCCC--CCCchHHHHHHHHhcCCCCChhhHHHHHhhh-cCCCeEeccCCC-CCCCCCCCCcEEEEccCCCcCC
Q 009785 278 CLVDIPGQKVP--SISNGEMANYLKTVVAPQIPREIFHSFVAAV-DGGNIKTMPNRS-MPAAPYPTPGALLMGDAFNMRH 353 (526)
Q Consensus 278 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~~~-~~~~~~~~grv~LiGDAAh~~~ 353 (526)
+.+....+... ..+..++.+.+.+ .| .+...+.... ........|... ...++...++++++||||..++
T Consensus 235 vG~~~~~~~~~~~~~~~~~~l~~~~~--~p----~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~ 308 (428)
T PRK10157 235 LGLVCGLHHLHDAKKSVPQMLEDFKQ--HP----AVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCM 308 (428)
T ss_pred EEEEEehHHhcccCCCHHHHHHHHHh--Cc----hHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEeccccccc
Confidence 54433211111 1222333333322 11 1111110000 000001122211 1234556789999999999999
Q ss_pred C--CCchhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchh
Q 009785 354 P--LTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVA 401 (526)
Q Consensus 354 P--~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~ 401 (526)
| ++|+|++.||..+..+|+.+.+....++ ...+.|..|++.-+...
T Consensus 309 p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~--~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 309 NLGFTIRGMDLAIAAGEAAAKTVLSAMKSDD--FSKQKLAEYRQHLESGP 356 (428)
T ss_pred ccCceeeeHHHHHHHHHHHHHHHHHHHhcCC--cchhhHHHHHHHHHHhH
Confidence 8 5999999999999999998887643222 23467888987666554
No 58
>PLN02697 lycopene epsilon cyclase
Probab=99.92 E-value=1.1e-22 Score=213.06 Aligned_cols=321 Identities=19% Similarity=0.179 Sum_probs=192.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC-
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD- 137 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~- 137 (526)
..+||+||||||+|+++|+.|++.|++|+|+|+...... ...++ ...++.+|+.+.+.. ...+..++.+
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~---n~GvW---~~~l~~lgl~~~i~~----~w~~~~v~~~~ 176 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVW---EDEFKDLGLEDCIEH----VWRDTIVYLDD 176 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC---ccccc---hhHHHhcCcHHHHHh----hcCCcEEEecC
Confidence 369999999999999999999999999999998632211 11222 245677888765543 1122223322
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEE
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ 217 (526)
+..... ... ...++|..|.+.|.+.+.+. ++++..++|+++.++++.+..+ ...+|. +++|++||+
T Consensus 177 ~~~~~~--------~~~-Yg~V~R~~L~~~Ll~~a~~~-GV~~~~~~V~~I~~~~~~~~vv--~~~dG~--~i~A~lVI~ 242 (529)
T PLN02697 177 DKPIMI--------GRA-YGRVSRTLLHEELLRRCVES-GVSYLSSKVDRITEASDGLRLV--ACEDGR--VIPCRLATV 242 (529)
T ss_pred Cceeec--------cCc-ccEEcHHHHHHHHHHHHHhc-CCEEEeeEEEEEEEcCCcEEEE--EEcCCc--EEECCEEEE
Confidence 211110 011 12588999999999999876 7888777899988766654322 234554 477999999
Q ss_pred eecCCccccccccCCC--C-CCccceeEEEEeccCCCCCCccEEEec---------------CCCcEEEEecCCCcEEE-
Q 009785 218 CDGCFSNLRRSLCNPK--V-DVPSCFVGLVLENCNLPFENHGHVVLA---------------DPSPILFYPISSNEVRC- 278 (526)
Q Consensus 218 ADG~~S~vR~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~- 278 (526)
|||.+|. +.+..+. + .......|+.+.-...+.+....++++ .++++|++|.++++..+
T Consensus 243 AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE 320 (529)
T PLN02697 243 ASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFE 320 (529)
T ss_pred CCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEE
Confidence 9999993 2222111 1 112345566554222222211122222 12467888999886555
Q ss_pred EEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCch
Q 009785 279 LVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGG 358 (526)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~ 358 (526)
...+.. .+..+.+.+++++.+.+... .-.+ ..+........|+.. +.+.. .++++++||||+++||.+|.
T Consensus 321 ~T~l~~--~~~l~~~~l~~~L~~~l~~~-Gi~~-----~~i~~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTGy 390 (529)
T PLN02697 321 ETCLAS--KDAMPFDLLKKRLMSRLETM-GIRI-----LKTYEEEWSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATGY 390 (529)
T ss_pred Eeeecc--CCCCCHHHHHHHHHHHHHhC-CCCc-----ceEEEEEeeeecCCC-CCccc-CCCeeEeehhhcCCCCchhh
Confidence 222211 12334566666666554311 0000 011111122334433 22222 67899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCC-------hHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhH
Q 009785 359 GMTVALSDIVILRNLLRHLSNLND-------APALCNYLESFYTLRKPVASTINTLAGALYQVF 415 (526)
Q Consensus 359 G~n~al~Da~~La~~L~~~~~~~~-------~~~~~~~L~~Y~~~R~~~~~~~~~~a~~~~~~~ 415 (526)
|+..++.+|..+|+.+++..+.++ .+.....++.|++.......+....-.....++
T Consensus 391 ~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l 454 (529)
T PLN02697 391 SVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALI 454 (529)
T ss_pred hHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 999999999999999998755333 124567889898877665544433333333333
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.92 E-value=1.1e-23 Score=218.86 Aligned_cols=335 Identities=22% Similarity=0.212 Sum_probs=204.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC---CeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcch--hhcccceeeeeeEEEE
Q 009785 62 DVIVVGAGVAGAALANTLAKDG---RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDC--VEQIDAQRVFGYALFK 136 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G---~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~--l~~~~~~~~~~~~~~~ 136 (526)
||+|||||++|.++|..|++.+ ++|+|||+.. .+...+|+...|.....++.+|+.+. +.+.+.....|..+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~-~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD-IPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS-S---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC-CCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 6999999999999999999998 8999999985 34566899999999999999999876 6666555555555421
Q ss_pred --C-CeeeeecCCC---------------------------------------------cC-CCCCcccceeechHHHHH
Q 009785 137 --D-GNRTQISYPL---------------------------------------------EK-FHSDVAGRGFHNGRFVQR 167 (526)
Q Consensus 137 --~-~~~~~~~~~~---------------------------------------------~~-~~~~~~~~~~~~~~l~~~ 167 (526)
. +......|.. .+ ......++.++|..|.+.
T Consensus 80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~ 159 (454)
T PF04820_consen 80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF 159 (454)
T ss_dssp SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence 1 1111111100 00 011234678899999999
Q ss_pred HHHHHHcCCCeEEEeceEEEEEeeC-CeEEEEEEEeCCCcEEEEEcCeEEEeecCCccccccc-cCCCCC---CccceeE
Q 009785 168 LREKAASLPNVRLEQGTVTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL-CNPKVD---VPSCFVG 242 (526)
Q Consensus 168 L~~~a~~~~~v~i~~~~v~~l~~~~-~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~l-~~~~~~---~~~~~~~ 242 (526)
|++.+.+. ||+++.++|+++..++ +.+.+ +..++|. +++||++|+|+|.+|.+.++. ..+... ......+
T Consensus 160 L~~~A~~~-Gv~~~~g~V~~v~~~~~g~i~~--v~~~~g~--~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~a 234 (454)
T PF04820_consen 160 LRRHAEER-GVEVIEGTVVDVELDEDGRITA--VRLDDGR--TIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRA 234 (454)
T ss_dssp HHHHHHHT-T-EEEET-EEEEEE-TTSEEEE--EEETTSE--EEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEE
T ss_pred HHHHHhcC-CCEEEeCEEEEEEEcCCCCEEE--EEECCCC--EEEEeEEEECCCccchhhHhhhcCCCccccccccccEE
Confidence 99999998 8999999988887654 44444 4456675 577999999999999887774 222111 1112233
Q ss_pred EEEe--ccCCCCCCccEEEecCCCcEEEEecCCCcEEEEEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhc
Q 009785 243 LVLE--NCNLPFENHGHVVLADPSPILFYPISSNEVRCLVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVD 320 (526)
Q Consensus 243 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 320 (526)
+... ..+ +..........+.|++|.+|+.++... .+.+.... .++++..+.+.+.+.... .
T Consensus 235 v~~~~~~~~-~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~---~s~~~A~~~l~~~l~~~~------------~ 297 (454)
T PF04820_consen 235 VAVQVPNED-PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDF---ISDDEAEAELLAYLGGSP------------E 297 (454)
T ss_dssp EEEEEE-SS-CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTT---SHHHHHHHHHHHHHTCHC------------T
T ss_pred EEEecCcCC-CCCCceeEEecCCceEEEccCCCcceE-EEEecccc---CCHHHHHHHHHHhcchhh------------h
Confidence 3322 122 233344455667789999999998655 44333321 233333333433322110 0
Q ss_pred CCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcch
Q 009785 321 GGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPV 400 (526)
Q Consensus 321 ~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 400 (526)
... ...+.......+...+|+++|||||..++|+.++|+.+++..+..|+..|..-. .. +.+++.|++..+..
T Consensus 298 ~~~-~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~----~~--~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 298 AEP-RHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD----FS--PAALDRYNRRMRRE 370 (454)
T ss_dssp TSC-EEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT----CC--HHHHHHHHHHHHHH
T ss_pred cch-hhhcccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC----CC--HHHHHHHHHHHHHH
Confidence 001 112222222455667889999999999999999999999999888888887421 11 56889999999999
Q ss_pred hHHHHHHHHHHHHhHccCCchHHHHH
Q 009785 401 ASTINTLAGALYQVFSASPDEARKEM 426 (526)
Q Consensus 401 ~~~~~~~a~~~~~~~~~~~~~~~~~l 426 (526)
...+.......|..-...+.+.....
T Consensus 371 ~~~~~~fi~~hY~~~~r~ds~FW~~~ 396 (454)
T PF04820_consen 371 YERIRDFISLHYQLSRRRDSPFWRAR 396 (454)
T ss_dssp HHHHHHHHHHHHHTHHS-SSHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCCHHHHhc
Confidence 98888888888876444333444443
No 60
>PLN02463 lycopene beta cyclase
Probab=99.90 E-value=1e-20 Score=195.50 Aligned_cols=289 Identities=19% Similarity=0.207 Sum_probs=173.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEE-
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK- 136 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~- 136 (526)
...+||+||||||+|+++|+.|+++|++|+|+|+++.... +.... -..+.++++|+.+++... .....++.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g---~w~~~l~~lgl~~~l~~~----w~~~~v~~~ 97 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYG---VWVDEFEALGLLDCLDTT----WPGAVVYID 97 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccc---hHHHHHHHCCcHHHHHhh----CCCcEEEEe
Confidence 3468999999999999999999999999999999753211 11111 113567888987766442 11122222
Q ss_pred CCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
++..... . .....++|..|.+.|.+.+.+. +++++.++|+++.++++. +.+..++|. +++||+||
T Consensus 98 ~~~~~~~--------~-~~y~~V~R~~L~~~Ll~~~~~~-GV~~~~~~V~~I~~~~~~---~~V~~~dG~--~i~A~lVI 162 (447)
T PLN02463 98 DGKKKDL--------D-RPYGRVNRKKLKSKMLERCIAN-GVQFHQAKVKKVVHEESK---SLVVCDDGV--KIQASLVL 162 (447)
T ss_pred CCCCccc--------c-CcceeEEHHHHHHHHHHHHhhc-CCEEEeeEEEEEEEcCCe---EEEEECCCC--EEEcCEEE
Confidence 1111110 1 1123578999999999998876 788887789999887664 345556775 47799999
Q ss_pred EeecCCccccccccCCCCCCccceeEEEEeccCCCCCCccEEE-------ec---------C--CCcEEEEecCCCcEEE
Q 009785 217 VCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVV-------LA---------D--PSPILFYPISSNEVRC 278 (526)
Q Consensus 217 ~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------~--~~~~~~~p~~~~~~~~ 278 (526)
+|||.+|++++.-. +.........|+...-...+.+....++ .+ . +++++.+|.++++..+
T Consensus 163 ~AdG~~s~l~~~~~-~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~v 241 (447)
T PLN02463 163 DATGFSRCLVQYDK-PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFL 241 (447)
T ss_pred ECcCCCcCccCCCC-CCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEE
Confidence 99999998875321 1111112344554431111111111111 01 0 3467888999886333
Q ss_pred EEEeCCCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCch
Q 009785 279 LVDIPGQKVPSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGG 358 (526)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~ 358 (526)
..+.-. ..+..+.+++++.+.+.+.. +.-.+. .+........|+... .+...+|++++||||.+++|.+|.
T Consensus 242 EeT~l~-s~~~~~~~~lk~~L~~~l~~-~Gi~~~-----~i~~~E~~~IPmg~~--~~~~~~~~~~~G~aag~v~p~tG~ 312 (447)
T PLN02463 242 EETSLV-ARPGLPMDDIQERMVARLRH-LGIKVK-----SVEEDEKCVIPMGGP--LPVIPQRVLGIGGTAGMVHPSTGY 312 (447)
T ss_pred Eeeeee-cCCCCCHHHHHHHHHHHHHH-CCCCcc-----eeeeeeeeEeeCCCC--CCCCCCCEEEecchhcCcCCCccc
Confidence 222100 11223445666666654321 110000 011111122344321 223457999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcC
Q 009785 359 GMTVALSDIVILRNLLRHLSN 379 (526)
Q Consensus 359 G~n~al~Da~~La~~L~~~~~ 379 (526)
|+..++..+..+++.+.+...
T Consensus 313 ~i~~~~~~~~~~a~~~~~~~~ 333 (447)
T PLN02463 313 MVARTLAAAPIVADAIVEYLG 333 (447)
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999987643
No 61
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.87 E-value=6.4e-20 Score=186.35 Aligned_cols=298 Identities=17% Similarity=0.200 Sum_probs=167.9
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCC-cccceeeCcchHHHHHHcCCcch----hhcccceeeeeeEE
Q 009785 62 DVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGLEDC----VEQIDAQRVFGYAL 134 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~--G~~V~l~Er~~~~~~-~~~g~~l~~~~~~~l~~lGl~~~----l~~~~~~~~~~~~~ 134 (526)
||+|||||++|+++|+.|++. |++|+|+|+.+.... +..+ +. ..++.+. +.........++.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~--~~--------~~~~~~~~~~~~~~~v~~~W~~~~v 70 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWS--FF--------DSDLSDAQHAWLADLVQTDWPGYEV 70 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccce--ec--------ccccchhhhhhhhhhheEeCCCCEE
Confidence 799999999999999999987 999999999863221 1110 11 1111111 11111122222333
Q ss_pred EECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCe
Q 009785 135 FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPL 214 (526)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~ 214 (526)
..++...... ..-..+++.+|.+.|.+.+.. ++ ....+|+++ +++ +|++ .+|+ +++|++
T Consensus 71 ~~~~~~~~l~---------~~Y~~I~r~~f~~~l~~~l~~--~i-~~~~~V~~v--~~~---~v~l--~dg~--~~~A~~ 129 (370)
T TIGR01789 71 RFPKYRRKLK---------TAYRSMTSTRFHEGLLQAFPE--GV-ILGRKAVGL--DAD---GVDL--APGT--RINARS 129 (370)
T ss_pred ECcchhhhcC---------CCceEEEHHHHHHHHHHhhcc--cE-EecCEEEEE--eCC---EEEE--CCCC--EEEeeE
Confidence 3221111111 122578999999999876643 22 223468877 334 2445 4565 467999
Q ss_pred EEEeecCCccccccccCCCCCCccceeEEEEeccCCCCCCccEEE----ec-CC--CcEEEEecCCCcEEEEEEeCCCCC
Q 009785 215 TIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVV----LA-DP--SPILFYPISSNEVRCLVDIPGQKV 287 (526)
Q Consensus 215 vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~--~~~~~~p~~~~~~~~~~~~~~~~~ 287 (526)
||+|||.+|.-... ....++.|+..+. ..|.+...... +. .+ .+++++|.++++..+-.+...+ .
T Consensus 130 VI~A~G~~s~~~~~------~~~Q~f~G~~~r~-~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~-~ 201 (370)
T TIGR01789 130 VIDCRGFKPSAHLK------GGFQVFLGREMRL-QEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD-D 201 (370)
T ss_pred EEECCCCCCCcccc------ceeeEEEEEEEEE-cCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC-C
Confidence 99999999852221 1235677777653 23322211111 11 12 2445578888865553332211 2
Q ss_pred CCCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCC---CCCCCCCCCcEEEEccCCCcCCCCCchhHHHHH
Q 009785 288 PSISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRS---MPAAPYPTPGALLMGDAFNMRHPLTGGGMTVAL 364 (526)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~---~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al 364 (526)
+.++.+.+++.+.+.+... ..... +....+. ...|+.. ..+.....++|+++|||||++||.+|+|++.++
T Consensus 202 ~~l~~~~l~~~l~~~~~~~-g~~~~----~i~~~e~-g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~ 275 (370)
T TIGR01789 202 PLLDRNALSQRIDQYARAN-GWQNG----TPVRHEQ-GVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAV 275 (370)
T ss_pred CCCCHHHHHHHHHHHHHHh-CCCce----EEEEeee-eEEeeecCCCcccccccCCceeeeecccccccccccccHHHHH
Confidence 3455666666666553211 00000 0011111 2344322 111112245699999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhcchhHHHHHHHH
Q 009785 365 SDIVILRNLLRHLSNLNDAPALCNYLESFYTLRKPVASTINTLAG 409 (526)
Q Consensus 365 ~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~a~ 409 (526)
+||..|++.+..- +....+++..|...|+++.....-+-.
T Consensus 276 ~~a~~la~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (370)
T TIGR01789 276 ENADALAAQPDLS-----SEQLAAFIDSRARRHWSKTGYYRLLNR 315 (370)
T ss_pred HHHHHHHhccCcC-----ccchhhhhhHHHHHHHHHhHHHHHHHH
Confidence 9999999988511 123445678899888777765544333
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.83 E-value=2.4e-18 Score=175.57 Aligned_cols=277 Identities=22% Similarity=0.236 Sum_probs=168.6
Q ss_pred cEEEECCCHHHHHHHHHH--HhCCCeEEEEecCCCC--CCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 62 DVIVVGAGVAGAALANTL--AKDGRRVHVIERDLSE--PDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~L--a~~G~~V~l~Er~~~~--~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
||+||||||||+++|..| ++.|.+|+|+|+++.. +... ....... .++. +.........+..+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~-tW~~~~~------~~~~---~~~~v~~~w~~~~v~~~ 70 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR-TWCFWEK------DLGP---LDSLVSHRWSGWRVYFP 70 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc-ccccccc------cccc---hHHHHheecCceEEEeC
Confidence 899999999999999999 8889999999998654 2111 1111111 1111 11111223334444443
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEE
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ 217 (526)
+...... ......+++..|.+.|.+.+. .+++.+..++|++++.+++ ++.+...+|. +++|++||+
T Consensus 71 ~~~~~~~--------~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~---~~~v~~~~g~--~i~a~~VvD 136 (374)
T PF05834_consen 71 DGSRILI--------DYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGD---GVLVVLADGR--TIRARVVVD 136 (374)
T ss_pred CCceEEc--------ccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCc---eEEEEECCCC--EEEeeEEEE
Confidence 3322111 122347899999999999998 5577777778999988776 3455677776 577999999
Q ss_pred eecCCccccccccCCCCCCccceeEEEEeccCCC--CCCccE---EEec----CCCcEEEEecCCCcEEEEEEeCCCCCC
Q 009785 218 CDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLP--FENHGH---VVLA----DPSPILFYPISSNEVRCLVDIPGQKVP 288 (526)
Q Consensus 218 ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~ 288 (526)
|+|..+...+. ....++.|+... .+.+ +++... +... ...+++++|.++++..+..++-.. .+
T Consensus 137 a~g~~~~~~~~------~~~Q~f~G~~v~-~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~-~~ 208 (374)
T PF05834_consen 137 ARGPSSPKARP------LGLQHFYGWEVE-TDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP-RP 208 (374)
T ss_pred CCCcccccccc------cccceeEEEEEe-ccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC-CC
Confidence 99977662111 122467777765 2222 122111 1121 234667789998865554433222 12
Q ss_pred CCCchHHHHHHHHhcCCCCChhhHHHHHhhhcCCCeEeccCCCCCCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHH
Q 009785 289 SISNGEMANYLKTVVAPQIPREIFHSFVAAVDGGNIKTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 368 (526)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~ 368 (526)
..+.+++++.+.+.+.. ..-... +.. ....-..|+......+...++++.+|+|++.++|.||.++..+++.+.
T Consensus 209 ~~~~~~~~~~l~~~l~~-~g~~~~----~i~-~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~ 282 (374)
T PF05834_consen 209 ALPEEELKARLRRYLER-LGIDDY----EIL-EEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQAD 282 (374)
T ss_pred CCCHHHHHHHHHHHHHH-cCCCce----eEE-EeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHH
Confidence 34455666666655432 110000 011 111223455333344445667999999999999999999999999999
Q ss_pred HHHHHHhh
Q 009785 369 ILRNLLRH 376 (526)
Q Consensus 369 ~La~~L~~ 376 (526)
.++..|..
T Consensus 283 ~ia~~l~~ 290 (374)
T PF05834_consen 283 AIADALAK 290 (374)
T ss_pred HHHHHHhh
Confidence 99998885
No 63
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.66 E-value=8.7e-15 Score=141.66 Aligned_cols=306 Identities=22% Similarity=0.264 Sum_probs=177.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCCCCCcc-cceeeCcchHHHHHHcCCcchhhcccceee
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKD------GRRVHVIERDLSEPDRI-VGELLQPGGYLKLIELGLEDCVEQIDAQRV 129 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~------G~~V~l~Er~~~~~~~~-~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~ 129 (526)
...++||+||||||+||++|+.|.+. .++|+|+||......+. .|..+.|.++..|- --|.+...-...++
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~--P~wke~~apl~t~v 150 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELL--PDWKEDGAPLNTPV 150 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhC--cchhhcCCcccccc
Confidence 34579999999999999999999763 47999999998877665 45667777765431 11110000011112
Q ss_pred eeeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEE-eeCCeEEEEEEEe----C
Q 009785 130 FGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLL-EEKGTIKGVQYKT----K 203 (526)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~-~~~~~v~gv~v~~----~ 203 (526)
..-.++.-.+..++..|......+...+.+.-+.+.+.|-+.+++. +++++.+- +.++. .+++.|.|+...+ +
T Consensus 151 T~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~-GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k 229 (621)
T KOG2415|consen 151 TSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEEL-GVEIYPGFAASEVLYDEDGSVKGIATNDVGISK 229 (621)
T ss_pred cccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhh-CceeccccchhheeEcCCCcEeeEeeccccccC
Confidence 1112211111222333322222334567888899999999999998 89999984 77766 4577888887654 3
Q ss_pred CCcEE-------EEEcCeEEEeecCCccccccccCCCC---CCccceeEEEEe---ccCCCCCCccEEE--ec----CC-
Q 009785 204 AGEEL-------TAYAPLTIVCDGCFSNLRRSLCNPKV---DVPSCFVGLVLE---NCNLPFENHGHVV--LA----DP- 263 (526)
Q Consensus 204 ~G~~~-------~i~a~~vV~ADG~~S~vR~~l~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~--~~----~~- 263 (526)
+|.++ ++.|+..|.|.|++..+-+++..... .......|+-+. ..+-.....+.+. ++ +.
T Consensus 230 ~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~~t 309 (621)
T KOG2415|consen 230 DGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDNDT 309 (621)
T ss_pred CCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcccCCc
Confidence 45432 57899999999999998887743211 111111222211 1111111222222 11 11
Q ss_pred -CcEEEEecCCCcEEEEEEeC-CCCCCCCCchHHHHHHHHhcCCCCChhhHHHHHh---------hhcCCCeEeccCCCC
Q 009785 264 -SPILFYPISSNEVRCLVDIP-GQKVPSISNGEMANYLKTVVAPQIPREIFHSFVA---------AVDGGNIKTMPNRSM 332 (526)
Q Consensus 264 -~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~---------~~~~~~i~~~~~~~~ 332 (526)
+-.++|.+++..+.+.+.+. .-..|.+++-.--+.++. .|.+.+.+.. ++.++.+ ...
T Consensus 310 YGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~------hP~i~~vleGgk~i~YgARaLNEGGf-----Qsi 378 (621)
T KOG2415|consen 310 YGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKH------HPSISKVLEGGKRIAYGARALNEGGF-----QSI 378 (621)
T ss_pred cCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhc------CcchhhhhcCcceeeehhhhhccCCc-----ccC
Confidence 23467888887666555443 223344444332233322 1223333211 1122221 122
Q ss_pred CCCCCCCCcEEEEccCCCcCCCCCchhHHHHHHHHHHHHHHHhhhc
Q 009785 333 PAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVILRNLLRHLS 378 (526)
Q Consensus 333 ~~~~~~~grv~LiGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~ 378 (526)
| .....+-+|||-+|+.++-----|..+||.++...|+.+-...
T Consensus 379 P--kl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai 422 (621)
T KOG2415|consen 379 P--KLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAI 422 (621)
T ss_pred c--ccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHH
Confidence 2 2333445889999999998888999999999999999886543
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.59 E-value=2e-14 Score=138.24 Aligned_cols=141 Identities=26% Similarity=0.277 Sum_probs=100.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccce-------eeCcchHHHHHHcCCcchhhcccceeeeee
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGE-------LLQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~-------~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 132 (526)
++||+||||||+|+++|+.|++.|++|+|+||.........+. .++....+.|+++|+....
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~----------- 93 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKE----------- 93 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCcee-----------
Confidence 5899999999999999999999999999999987654322211 1222334445555542100
Q ss_pred EEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC-eEEEEEEEeC----CC-
Q 009785 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG-TIKGVQYKTK----AG- 205 (526)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~-~v~gv~v~~~----~G- 205 (526)
. ....+.+++..+...|.+.+.+. +++++.++ |+++..+++ ++.|+.+... +|
T Consensus 94 --~-----------------~~g~~~vd~~~l~~~L~~~A~~~-Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~ 153 (257)
T PRK04176 94 --V-----------------EDGLYVADSVEAAAKLAAAAIDA-GAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGL 153 (257)
T ss_pred --e-----------------cCcceeccHHHHHHHHHHHHHHc-CCEEEcCceeceeeEeCCCcEEEEEEccccccccCC
Confidence 0 00123456778999999999887 78998884 999886555 7888876431 12
Q ss_pred --cEEEEEcCeEEEeecCCccccccccC
Q 009785 206 --EELTAYAPLTIVCDGCFSNLRRSLCN 231 (526)
Q Consensus 206 --~~~~i~a~~vV~ADG~~S~vR~~l~~ 231 (526)
+..+++|++||+|+|.+|.+.+.+..
T Consensus 154 ~~~~~~i~Ak~VI~ATG~~a~v~~~l~~ 181 (257)
T PRK04176 154 HVDPLTIEAKAVVDATGHDAEVVSVLAR 181 (257)
T ss_pred CCCcEEEEcCEEEEEeCCCcHHHHHHHH
Confidence 34678999999999999999887753
No 65
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.55 E-value=8.9e-14 Score=133.32 Aligned_cols=140 Identities=27% Similarity=0.349 Sum_probs=97.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccce-------eeCcchHHHHHHcCCcchhhcccceeeeee
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGE-------LLQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~-------~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 132 (526)
++||+||||||+|+++|+.|+++|.+|+|+||+........+. .++....+.++++|+..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~------------- 87 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRY------------- 87 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCe-------------
Confidence 5899999999999999999999999999999997643322111 11222334444444320
Q ss_pred EEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC--eEEEEEEEeC----CC
Q 009785 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG--TIKGVQYKTK----AG 205 (526)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~--~v~gv~v~~~----~G 205 (526)
.. .....+..++..+.+.|.+.+.+. ++++++++ ++++..+++ ++.||.+... +|
T Consensus 88 ---------------~~--~~~g~~~~~~~el~~~L~~~a~e~-GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g 149 (254)
T TIGR00292 88 ---------------ED--EGDGYVVADSAEFISTLASKALQA-GAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG 149 (254)
T ss_pred ---------------ee--ccCceEEeeHHHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC
Confidence 00 000112346678999999999888 68988885 999987666 5888876421 12
Q ss_pred ---cEEEEEcCeEEEeecCCcccccccc
Q 009785 206 ---EELTAYAPLTIVCDGCFSNLRRSLC 230 (526)
Q Consensus 206 ---~~~~i~a~~vV~ADG~~S~vR~~l~ 230 (526)
++.+++|++||+|+|..|.+.+.+.
T Consensus 150 ~~~d~~~i~Ak~VVdATG~~a~v~~~l~ 177 (254)
T TIGR00292 150 LHVDPLTQRSRVVVDATGHDAEIVAVCA 177 (254)
T ss_pred CCCCCEEEEcCEEEEeecCCchHHHHHH
Confidence 3567899999999999998877764
No 66
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.50 E-value=5e-13 Score=120.62 Aligned_cols=138 Identities=30% Similarity=0.310 Sum_probs=94.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc-------eeeCcchHHHHHHcCCcchhhcccceeeeee
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG-------ELLQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g-------~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 132 (526)
++||+||||||+||++|+.|++.|++|+|+||+..+.....+ ..++..+..+|+++|+.-. +
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~--~--------- 85 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE--E--------- 85 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E--E---------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE--E---------
Confidence 589999999999999999999999999999999776544332 2356677888888887410 0
Q ss_pred EEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEe----CCC-
Q 009785 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKT----KAG- 205 (526)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~-~~v~gv~v~~----~~G- 205 (526)
....-+..+-..+...|...+.+ +|++++... |+++...+ ++|.||.+.- ..|
T Consensus 86 -------------------~~~g~~v~d~~~~~s~L~s~a~~-aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl 145 (230)
T PF01946_consen 86 -------------------YGDGYYVADSVEFTSTLASKAID-AGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL 145 (230)
T ss_dssp --------------------SSEEEES-HHHHHHHHHHHHHT-TTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--
T ss_pred -------------------eCCeEEEEcHHHHHHHHHHHHhc-CCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc
Confidence 00111234556788888888888 489999985 99988655 8999988763 122
Q ss_pred --cEEEEEcCeEEEeecCCcccccc
Q 009785 206 --EELTAYAPLTIVCDGCFSNLRRS 228 (526)
Q Consensus 206 --~~~~i~a~~vV~ADG~~S~vR~~ 228 (526)
++.+++|++||+|+|.-+.+-+.
T Consensus 146 HvDPl~i~ak~ViDaTGHda~v~~~ 170 (230)
T PF01946_consen 146 HVDPLTIRAKVVIDATGHDAEVVRV 170 (230)
T ss_dssp T-B-EEEEESEEEE---SSSSSTSH
T ss_pred CCCcceEEEeEEEeCCCCchHHHHH
Confidence 45689999999999998876443
No 67
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.49 E-value=2.7e-12 Score=140.86 Aligned_cols=214 Identities=21% Similarity=0.176 Sum_probs=121.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCCCC----------CccC-CCCCCCCcEEEECCC
Q 009785 1 MADQYTWGLILGAVLGLVAVYNLGLLALYNLVMRSKSEDNGADSLRKTPT----------TALN-GECPFDADVIVVGAG 69 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~dVvIVGaG 69 (526)
|+++++.+++++|++++..+.. .|...+|.+.+.+.. ..+++|..... +... ...+.++||+|||||
T Consensus 192 l~~~~~~~~~~~t~t~a~~vr~-~l~~~GF~v~~~~~~-g~kr~~~~~~~~~~~~~~~~~~w~~~~~~~~~~dVvIIGaG 269 (662)
T PRK01747 192 LARLARPGATLATFTSAGFVRR-GLQEAGFTVRKVKGF-GRKREMLVGELEQTLPAPLAAPWFARPGSPKARDAAIIGGG 269 (662)
T ss_pred HHHHhCCCCEEEEeehHHHHHH-HHHHcCCeeeecCCC-chhhhhhhehhccccCCCCCCCcccCCCcCCCCCEEEECcc
Confidence 4678888888888887777776 688999998776655 55555433211 0000 111124799999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCC----cccceeeCcc----h---HHHH-----HHcCCcchhhc--ccc-eeee
Q 009785 70 VAGAALANTLAKDGRRVHVIERDLSEPD----RIVGELLQPG----G---YLKL-----IELGLEDCVEQ--IDA-QRVF 130 (526)
Q Consensus 70 ~aGl~~A~~La~~G~~V~l~Er~~~~~~----~~~g~~l~~~----~---~~~l-----~~lGl~~~l~~--~~~-~~~~ 130 (526)
++|+++|+.|+++|.+|+|+||+..+.. +..| .+.+. . .+.. ....++..+.+ ... ....
T Consensus 270 IaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G-~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~~~~~~~~~~~ 348 (662)
T PRK01747 270 IAGAALALALARRGWQVTLYEADEAPAQGASGNRQG-ALYPLLSKDDNALSRFFRAAFLFARRFYDALPAAGVAFDHDWC 348 (662)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCccccCCcCccc-ccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999999853221 1111 11111 0 1110 01111111110 000 0011
Q ss_pred eeE-EEECCee------------------------eeecCCCcCC---CCCcccceeechHHHHHHHHHHHcCCCeEEEe
Q 009785 131 GYA-LFKDGNR------------------------TQISYPLEKF---HSDVAGRGFHNGRFVQRLREKAASLPNVRLEQ 182 (526)
Q Consensus 131 ~~~-~~~~~~~------------------------~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~ 182 (526)
|.. +..+.+. .....+.... ...+.+..++...+.+.|.+.+.+ ++++++
T Consensus 349 G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~--Gv~i~~ 426 (662)
T PRK01747 349 GVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ--QLTIHF 426 (662)
T ss_pred ceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc--CcEEEe
Confidence 111 1111000 0000000000 001112345667888999988877 688887
Q ss_pred c-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 183 G-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 183 ~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
+ +|+++..+++.+ ++.+.+|. .++||.||.|+|.+|.
T Consensus 427 ~~~V~~i~~~~~~~---~v~t~~g~--~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 427 GHEVARLEREDDGW---QLDFAGGT--LASAPVVVLANGHDAA 464 (662)
T ss_pred CCEeeEEEEeCCEE---EEEECCCc--EEECCEEEECCCCCcc
Confidence 7 499998776643 45566664 3569999999999985
No 68
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.47 E-value=7.9e-13 Score=118.35 Aligned_cols=139 Identities=27% Similarity=0.335 Sum_probs=100.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccce-------eeCcchHHHHHHcCCcchhhcccceeeeee
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGE-------LLQPGGYLKLIELGLEDCVEQIDAQRVFGY 132 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~-------~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 132 (526)
+.||+||||||+||++|+.|++.|++|+|+||+-.......+. .++..+.++|+++|+.-+-.+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e--------- 100 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEE--------- 100 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecC---------
Confidence 4799999999999999999999999999999997665443322 245556677887776411100
Q ss_pred EEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC-eEEEEEEEeC----CC-
Q 009785 133 ALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKG-TIKGVQYKTK----AG- 205 (526)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~-~v~gv~v~~~----~G- 205 (526)
..-+..+-..+...|...+.+. ++.++++. |+++...++ +|.||.+.-. .+
T Consensus 101 ---------------------~g~~v~ds~e~~skl~~~a~~a-Gaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~l 158 (262)
T COG1635 101 ---------------------DGYYVADSAEFASKLAARALDA-GAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGL 158 (262)
T ss_pred ---------------------CceEEecHHHHHHHHHHHHHhc-CceeeecceEEEEEEecCCceEEEEEecchhhhccc
Confidence 0112334556888899888888 58888885 999986666 7888887531 11
Q ss_pred --cEEEEEcCeEEEeecCCccccccc
Q 009785 206 --EELTAYAPLTIVCDGCFSNLRRSL 229 (526)
Q Consensus 206 --~~~~i~a~~vV~ADG~~S~vR~~l 229 (526)
++.+++|++||+|+|.-..+-+.+
T Consensus 159 hvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 159 HVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred ccCcceeeEEEEEeCCCCchHHHHHH
Confidence 345789999999999877664444
No 69
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.40 E-value=1.9e-11 Score=126.09 Aligned_cols=213 Identities=21% Similarity=0.241 Sum_probs=128.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC-cccceeeCcchHHHHHHcCCc---chhhc------ccce-
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGLE---DCVEQ------IDAQ- 127 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~-~~~g~~l~~~~~~~l~~lGl~---~~l~~------~~~~- 127 (526)
.++||+|||||+.|+-+|..++.+|++|+|+|++..... .++...+-.+|.+.|++..+. +++.+ +..+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 469999999999999999999999999999999875433 345566778888888764332 33322 1111
Q ss_pred --eeeeeEEEEC-------------------Ce------eeeecCC----Cc-CCCC-------CcccceeechHHHHHH
Q 009785 128 --RVFGYALFKD-------------------GN------RTQISYP----LE-KFHS-------DVAGRGFHNGRFVQRL 168 (526)
Q Consensus 128 --~~~~~~~~~~-------------------~~------~~~~~~~----~~-~~~~-------~~~~~~~~~~~l~~~L 168 (526)
+........+ +. ...+... .. .... ......++..+|....
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 1111100011 10 0000000 00 0000 0112345666788778
Q ss_pred HHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCc-cccccccCCCCC----CccceeE
Q 009785 169 REKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCNPKVD----VPSCFVG 242 (526)
Q Consensus 169 ~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S-~vR~~l~~~~~~----~~~~~~~ 242 (526)
...+.+.|...+.+.+|+++..+++ +.||++.+ .+|++++++|+.||.|+|.|+ .+++..+..... .++.-+-
T Consensus 171 a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsH 249 (532)
T COG0578 171 ARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSH 249 (532)
T ss_pred HHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceE
Confidence 8888888544444456999999888 99999988 568889999999999999999 567766543221 1222223
Q ss_pred EEEeccCCCCCCccEEEec--CCCcEEEEecCCC
Q 009785 243 LVLENCNLPFENHGHVVLA--DPSPILFYPISSN 274 (526)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~ 274 (526)
+++.. .++.+ ...++-+ ++...+++|-.+.
T Consensus 250 lVv~~-~~~~~-~a~~~~~~~d~r~~f~iP~~~~ 281 (532)
T COG0578 250 LVVDK-KFPIN-QAVINRCRKDGRIVFAIPYEGK 281 (532)
T ss_pred EEecc-cCCCC-ceEEeecCCCCceEEEecCCCC
Confidence 33322 23333 3333333 4556777887765
No 70
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.40 E-value=5.5e-11 Score=126.23 Aligned_cols=168 Identities=19% Similarity=0.232 Sum_probs=93.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC-cccceeeCcchHHHHHHcCCc---chh------hcccce
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGLE---DCV------EQIDAQ 127 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~-~~~g~~l~~~~~~~l~~lGl~---~~l------~~~~~~ 127 (526)
++++||+|||||++|+++|+.|+++|++|+|+||+..... ...+..+-.++.+.+....+. +.+ ......
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p~ 83 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAPH 83 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCCC
Confidence 4469999999999999999999999999999999754222 222333444444443321100 000 000000
Q ss_pred ---------eee-----------eeEEEE--CCe-------eeeec-CCC-cCCCCC------cccceeechHHHHHHHH
Q 009785 128 ---------RVF-----------GYALFK--DGN-------RTQIS-YPL-EKFHSD------VAGRGFHNGRFVQRLRE 170 (526)
Q Consensus 128 ---------~~~-----------~~~~~~--~~~-------~~~~~-~~~-~~~~~~------~~~~~~~~~~l~~~L~~ 170 (526)
+.. +..+++ ... ..... ... ...... .....++..++...+.+
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~~ 163 (508)
T PRK12266 84 IIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNAR 163 (508)
T ss_pred cccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHHH
Confidence 000 000000 000 00000 000 000000 01113455667777877
Q ss_pred HHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCcc-ccc
Q 009785 171 KAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN-LRR 227 (526)
Q Consensus 171 ~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~-vR~ 227 (526)
.+.+. |++++.+ +|+++..+++.+ +|++.+ .+|+..+++|+.||.|+|.++. +++
T Consensus 164 ~A~~~-Ga~i~~~~~V~~i~~~~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 221 (508)
T PRK12266 164 DAAER-GAEILTRTRVVSARRENGLW-HVTLEDTATGKRYTVRARALVNAAGPWVKQFLD 221 (508)
T ss_pred HHHHc-CCEEEcCcEEEEEEEeCCEE-EEEEEEcCCCCEEEEEcCEEEECCCccHHHHHh
Confidence 78877 6788777 599988766543 466554 3566667899999999999983 434
No 71
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.39 E-value=6.8e-12 Score=125.74 Aligned_cols=172 Identities=22% Similarity=0.336 Sum_probs=106.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC-cccceeeCcchHHHHHHc----CCc------chhhc---
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIEL----GLE------DCVEQ--- 123 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~-~~~g~~l~~~~~~~l~~l----Gl~------~~l~~--- 123 (526)
..++||+|||||-+|.-+|+..+-+|.+|.|+|+++..+. .++..-+-.+|++.|++. ... +.+.+
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~ 144 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERAN 144 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999875443 334556777888877642 211 11111
Q ss_pred ---ccce---------ee----------ee---eEEEECCeeee-----------ecCCCcCCCCCcccce------eec
Q 009785 124 ---IDAQ---------RV----------FG---YALFKDGNRTQ-----------ISYPLEKFHSDVAGRG------FHN 161 (526)
Q Consensus 124 ---~~~~---------~~----------~~---~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~------~~~ 161 (526)
.... ++ .| |.+..+.+... ..+|.-.. ....|.. .+.
T Consensus 145 lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~-~~L~Ga~VYyDGQ~nD 223 (680)
T KOG0042|consen 145 LLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRK-DNLKGAMVYYDGQHND 223 (680)
T ss_pred HhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccc-cCceeEEEEecCCCch
Confidence 0000 00 01 11111111111 11221111 1122222 233
Q ss_pred hHHHHHHHHHHHcCCCeEEEec-eEEEEEee-CCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCc-cccccccC
Q 009785 162 GRFVQRLREKAASLPNVRLEQG-TVTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCN 231 (526)
Q Consensus 162 ~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~-~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S-~vR~~l~~ 231 (526)
.++.-.+.-.|.+. |.++.++ +|.++..+ ++++.|+.+++ .+|++++|+|+.||.|+|.+| .+|++-..
T Consensus 224 aRmnl~vAlTA~r~-GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~ 296 (680)
T KOG0042|consen 224 ARMNLAVALTAARN-GATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDE 296 (680)
T ss_pred HHHHHHHHHHHHhc-chhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhccc
Confidence 45555666666666 5666555 68888865 45688999988 589999999999999999999 56665543
No 72
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.38 E-value=1.1e-10 Score=124.11 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=95.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC-cccceeeCcchHHHHHHcCCc---chh------hcccce
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQPGGYLKLIELGLE---DCV------EQIDAQ 127 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~-~~~g~~l~~~~~~~l~~lGl~---~~l------~~~~~~ 127 (526)
+.++||+|||||++|+++|+.|+++|.+|+|+||...... ......+-..+.+.+....+. +.+ .+....
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 4569999999999999999999999999999999854321 112222323344443322211 000 000000
Q ss_pred eee--eeEEEEC-Cee------------------------eeec-------CCCcC-C--CCCcccceeechHHHHHHHH
Q 009785 128 RVF--GYALFKD-GNR------------------------TQIS-------YPLEK-F--HSDVAGRGFHNGRFVQRLRE 170 (526)
Q Consensus 128 ~~~--~~~~~~~-~~~------------------------~~~~-------~~~~~-~--~~~~~~~~~~~~~l~~~L~~ 170 (526)
... ++.+-.. ... ..+. .+..+ . ........++..++...|.+
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~ 163 (502)
T PRK13369 84 IIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNAL 163 (502)
T ss_pred cccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHH
Confidence 000 0000000 000 0000 00000 0 00001123456678888888
Q ss_pred HHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc-ccc
Q 009785 171 KAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN-LRR 227 (526)
Q Consensus 171 ~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~-vR~ 227 (526)
.+.+. |++++.+ +|+++..+++. .+|++.+..|++.+++|+.||.|+|.+|. +.+
T Consensus 164 ~a~~~-Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 164 DAAER-GATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred HHHHC-CCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence 88887 6777777 59998877654 34666665577778999999999999984 444
No 73
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.34 E-value=2e-11 Score=128.53 Aligned_cols=149 Identities=22% Similarity=0.310 Sum_probs=93.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC-CcccceeeCc----chHHHHHHcCCc--chhhcccceeeee
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQP----GGYLKLIELGLE--DCVEQIDAQRVFG 131 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~-~~~~g~~l~~----~~~~~l~~lGl~--~~l~~~~~~~~~~ 131 (526)
.+|||+|||||+||+.||+.+++.|.+|+|+|++.... ..+|.-.+.. ...+.++.+|-. ...+... ..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~g----iq 78 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTG----IQ 78 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhcc----Cc
Confidence 36999999999999999999999999999999984221 1111111110 112223333311 1111100 01
Q ss_pred eEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEE
Q 009785 132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAY 211 (526)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~ 211 (526)
+......+.... ......+++..+...|.+.+.+.+++++..++|+++..+++++.+|.. .+|. .++
T Consensus 79 ~r~ln~skGpAV---------~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t--~dG~--~I~ 145 (618)
T PRK05192 79 FRMLNTSKGPAV---------RALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVT--QDGL--EFR 145 (618)
T ss_pred eeecccCCCCce---------eCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEE--CCCC--EEE
Confidence 111111000000 001125678888899999998888999988889999888888877765 4565 478
Q ss_pred cCeEEEeecCCcc
Q 009785 212 APLTIVCDGCFSN 224 (526)
Q Consensus 212 a~~vV~ADG~~S~ 224 (526)
|+.||.|+|.++.
T Consensus 146 Ak~VIlATGTFL~ 158 (618)
T PRK05192 146 AKAVVLTTGTFLR 158 (618)
T ss_pred CCEEEEeeCcchh
Confidence 9999999998774
No 74
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.33 E-value=3.6e-11 Score=127.67 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=97.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc--cceeeCcchHHHHHHcCCcchhhcccc--------
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQIDA-------- 126 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~--~g~~l~~~~~~~l~~lGl~~~l~~~~~-------- 126 (526)
++.++||||||+|.+|+++|+.+++.|.+|+||||.+...... .+..++.......+..|+.+.....-.
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 137 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGG 137 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCC
Confidence 3457999999999999999999999999999999987543211 111222212222223333221100000
Q ss_pred ------------e--------eeeeeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-E
Q 009785 127 ------------Q--------RVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-V 185 (526)
Q Consensus 127 ------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v 185 (526)
. ...+..+...........+ .. ..+......-..+...|.+.+++. +++++.++ |
T Consensus 138 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~--r~-~~p~~g~~~g~~l~~~L~~~~~~~-gv~i~~~t~v 213 (506)
T PRK06481 138 TNDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEK--RT-HRPHDGSAVGGYLVDGLLKNVQER-KIPLFVNADV 213 (506)
T ss_pred CCCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCC--ce-eccCCCCCChHHHHHHHHHHHHHc-CCeEEeCCee
Confidence 0 0011111000000000000 00 000000011235777888888876 78888885 9
Q ss_pred EEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcccccc
Q 009785 186 TSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRS 228 (526)
Q Consensus 186 ~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~ 228 (526)
+++..++++|.+|.+...+|+..+++++.||.|+|.++.-.+.
T Consensus 214 ~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m 256 (506)
T PRK06481 214 TKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDM 256 (506)
T ss_pred EEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHH
Confidence 9998877889999887777666679999999999998875433
No 75
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.30 E-value=4.3e-11 Score=119.78 Aligned_cols=148 Identities=28% Similarity=0.349 Sum_probs=90.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEe-cCCCCCCcccceeeCcchH----HHHHHcCCcchhhcccceeeeeeEEEE
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIE-RDLSEPDRIVGELLQPGGY----LKLIELGLEDCVEQIDAQRVFGYALFK 136 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~E-r~~~~~~~~~g~~l~~~~~----~~l~~lGl~~~l~~~~~~~~~~~~~~~ 136 (526)
||+|||||.||+.||+.+++.|.+|+|+. +.......+|...+...+. +.++.+|- ......+... ..+.+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg-~m~~~aD~~~-i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGG-LMGRAADETG-IHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT--SHHHHHHHHE-EEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhh-HHHHHHhHhh-hhhhccc
Confidence 79999999999999999999999999993 3333333333333322222 33444551 1111111111 1111111
Q ss_pred CCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
..+. ......-..++|..+.+.+++.+.+.+++++..++|+++..++++|.||. +.+|+ ++.+|.||
T Consensus 79 ~skG---------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~--~~~g~--~~~a~~vV 145 (392)
T PF01134_consen 79 RSKG---------PAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVV--TKDGE--EIEADAVV 145 (392)
T ss_dssp TTS----------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEE--ETTSE--EEEECEEE
T ss_pred ccCC---------CCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEE--eCCCC--EEecCEEE
Confidence 1100 00111123689999999999999999999999999999999999998876 46676 47799999
Q ss_pred EeecCCcc
Q 009785 217 VCDGCFSN 224 (526)
Q Consensus 217 ~ADG~~S~ 224 (526)
.|+|.+..
T Consensus 146 laTGtfl~ 153 (392)
T PF01134_consen 146 LATGTFLN 153 (392)
T ss_dssp E-TTTGBT
T ss_pred EecccccC
Confidence 99999443
No 76
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.30 E-value=5.7e-10 Score=120.94 Aligned_cols=73 Identities=23% Similarity=0.362 Sum_probs=56.9
Q ss_pred eeechHHHHHHHHHHHcCCCeEEEec-eEEEEEee--CCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCc-cccccccC
Q 009785 158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEE--KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCN 231 (526)
Q Consensus 158 ~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~--~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S-~vR~~l~~ 231 (526)
.++...+...|.+.+.+. |++++.+ +|+++..+ ++++.+|++.+ .+|+.+++++|.||.|+|.+| .+++.++.
T Consensus 228 ~vdp~rl~~al~~~A~~~-Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~ 305 (627)
T PLN02464 228 QMNDSRLNVALACTAALA-GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADG 305 (627)
T ss_pred EEcHHHHHHHHHHHHHhC-CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccC
Confidence 356678889999999888 6788777 59998866 46788888766 355555789999999999998 47776653
No 77
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.28 E-value=4.6e-11 Score=117.17 Aligned_cols=144 Identities=27% Similarity=0.333 Sum_probs=90.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCccc--c-eeeC---c-chHHHHHHcC-----Ccchhhcccc
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--G-ELLQ---P-GGYLKLIELG-----LEDCVEQIDA 126 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~--g-~~l~---~-~~~~~l~~lG-----l~~~l~~~~~ 126 (526)
+.+||+|||||||||+||..++++|.+|+|+|+.+....+.. | ...+ . .--+++.+.+ +...+..+..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 358999999999999999999999999999999987654331 1 1111 0 0112222221 0011111110
Q ss_pred ------eeeeeeEEEECCeeeeecCCCcCCCCCcccceee----chHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeE
Q 009785 127 ------QRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFH----NGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTI 195 (526)
Q Consensus 127 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v 195 (526)
....|...+.. ..|+.+. -..+.+.|..++++. +|+++..+ |.++..++.
T Consensus 82 ~d~i~~~e~~Gi~~~e~----------------~~Gr~Fp~sdkA~~Iv~~ll~~~~~~-gV~i~~~~~v~~v~~~~~-- 142 (408)
T COG2081 82 EDFIDWVEGLGIALKEE----------------DLGRMFPDSDKASPIVDALLKELEAL-GVTIRTRSRVSSVEKDDS-- 142 (408)
T ss_pred HHHHHHHHhcCCeeEEc----------------cCceecCCccchHHHHHHHHHHHHHc-CcEEEecceEEeEEecCc--
Confidence 01112221111 1122221 235788999999988 89999885 999988774
Q ss_pred EEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 196 KGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 196 ~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
+..+.+++|+ +++||-+|.|+|+.|.
T Consensus 143 -~f~l~t~~g~--~i~~d~lilAtGG~S~ 168 (408)
T COG2081 143 -GFRLDTSSGE--TVKCDSLILATGGKSW 168 (408)
T ss_pred -eEEEEcCCCC--EEEccEEEEecCCcCC
Confidence 4567788886 5789999999998884
No 78
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.27 E-value=1.4e-09 Score=111.85 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=51.3
Q ss_pred ceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCC-ccccccccCCC
Q 009785 157 RGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF-SNLRRSLCNPK 233 (526)
Q Consensus 157 ~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~-S~vR~~l~~~~ 233 (526)
..++...+.+.|.+.+++. +++++.++ |+++..+++.+ .+...+| ++++|.||.|+|.+ |.+++.++...
T Consensus 140 g~i~p~~~~~~l~~~~~~~-g~~~~~~~~V~~i~~~~~~~---~v~~~~~---~i~a~~vV~aaG~~~~~l~~~~g~~~ 211 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAH-GATVRDGTKVVEIEPTELLV---TVKTTKG---SYQANKLVVTAGAWTSKLLSPLGIEI 211 (380)
T ss_pred cEEcHHHHHHHHHHHHHHc-CCEEECCCeEEEEEecCCeE---EEEeCCC---EEEeCEEEEecCcchHHHhhhcccCC
Confidence 3556678888998888877 78888874 99998776643 3444555 36799999999987 56787776543
No 79
>PLN02661 Putative thiazole synthesis
Probab=99.27 E-value=1.2e-10 Score=114.91 Aligned_cols=136 Identities=26% Similarity=0.316 Sum_probs=91.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCCcc--ccee-----eCcchHHHHHHcCCcchhhcccceeee
Q 009785 59 FDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDRI--VGEL-----LQPGGYLKLIELGLEDCVEQIDAQRVF 130 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~-G~~V~l~Er~~~~~~~~--~g~~-----l~~~~~~~l~~lGl~~~l~~~~~~~~~ 130 (526)
.++||+|||||++|+++|+.|++. |.+|+|+||........ .|.. ++....+.|+++|+.- ... .
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~f--d~~-----d 163 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPY--DEQ-----E 163 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCc--ccC-----C
Confidence 368999999999999999999986 89999999986543211 1111 1112344555665531 000 0
Q ss_pred eeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe------C
Q 009785 131 GYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT------K 203 (526)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~------~ 203 (526)
++. ...+...+...|.+.+.+.+++++++++ ++++..+++++.||.+.. .
T Consensus 164 gy~-----------------------vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~ 220 (357)
T PLN02661 164 NYV-----------------------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNH 220 (357)
T ss_pred Cee-----------------------EecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhcc
Confidence 000 0112245667888888777799999985 999998888898988631 1
Q ss_pred -C---CcEEEEEcCeEEEeecCCcc
Q 009785 204 -A---GEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 204 -~---G~~~~i~a~~vV~ADG~~S~ 224 (526)
+ .+...++|+.||.|+|..++
T Consensus 221 ~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 221 DTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred CCCCccceeEEECCEEEEcCCCCCc
Confidence 1 13456899999999996654
No 80
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.24 E-value=1e-10 Score=118.79 Aligned_cols=69 Identities=29% Similarity=0.399 Sum_probs=51.7
Q ss_pred cceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccc-ccccc
Q 009785 156 GRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL-RRSLC 230 (526)
Q Consensus 156 ~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~v-R~~l~ 230 (526)
+..++...+.+.|.+.+++. |++++.+ +|+++..+++++.+|. +.+|+ ++||.||.|+|.+|.- .+.++
T Consensus 141 ~g~i~~~~l~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~gv~--~~~g~---i~ad~vV~a~G~~s~~l~~~~~ 211 (358)
T PF01266_consen 141 GGVIDPRRLIQALAAEAQRA-GVEIRTGTEVTSIDVDGGRVTGVR--TSDGE---IRADRVVLAAGAWSPQLLPLLG 211 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHT-T-EEEESEEEEEEEEETTEEEEEE--ETTEE---EEECEEEE--GGGHHHHHHTTT
T ss_pred cccccccchhhhhHHHHHHh-hhhccccccccchhhccccccccc--ccccc---cccceeEecccccceeeeeccc
Confidence 44567789999999999998 7999999 5999999998765554 66674 7799999999998853 34443
No 81
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.21 E-value=4e-12 Score=132.11 Aligned_cols=153 Identities=25% Similarity=0.209 Sum_probs=34.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCccccee---eCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGEL---LQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~---l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
|||||||||+|++||+.+++.|.+|+|+||............ +..........-|+..++.+.... ..+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~-~~~~------ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRA-RGGY------ 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhh-hccc------
Confidence 899999999999999999999999999999976544332211 111110001111222222221100 0000
Q ss_pred eeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEE
Q 009785 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (526)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ 217 (526)
..+ ..........+++..+...|.+.+.+. +++++.++ |+++..+++++.+|++.+.+| ..+++|+++|+
T Consensus 74 -----~~~--~~~~~~~~~~~~~~~~~~~l~~~l~e~-gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~ID 144 (428)
T PF12831_consen 74 -----PQE--DRYGWVSNVPFDPEVFKAVLDEMLAEA-GVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFID 144 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----ccc--ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccccccccccc
Confidence 000 000000012345556666777777554 89999996 999999888999999988777 57899999999
Q ss_pred eecCCccccccccC
Q 009785 218 CDGCFSNLRRSLCN 231 (526)
Q Consensus 218 ADG~~S~vR~~l~~ 231 (526)
|+|- +.+-...|.
T Consensus 145 aTG~-g~l~~~aG~ 157 (428)
T PF12831_consen 145 ATGD-GDLAALAGA 157 (428)
T ss_dssp --------------
T ss_pred cccc-ccccccccc
Confidence 9994 445444444
No 82
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.20 E-value=3.4e-10 Score=119.49 Aligned_cols=67 Identities=25% Similarity=0.313 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccccccc
Q 009785 162 GRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229 (526)
Q Consensus 162 ~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~l 229 (526)
..+...|.+.+++. +++++.+ +|+++..++++|.+|.+...+|+..+++++.||.|+|.++.-++.+
T Consensus 131 ~~l~~~l~~~~~~~-gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 131 KALVNALYRSAERL-GVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 35778888888877 7888887 5999988778888888866667666789999999999988655444
No 83
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.18 E-value=6.5e-09 Score=107.96 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=46.7
Q ss_pred echHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCc-EEEEEcCeEEEeecCCcc-cccccc
Q 009785 160 HNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGE-ELTAYAPLTIVCDGCFSN-LRRSLC 230 (526)
Q Consensus 160 ~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~-~~~i~a~~vV~ADG~~S~-vR~~l~ 230 (526)
+-..+...|.+.+++. +++++++ +|+++..+++.+. +.+.+.++. ..+++||.||.|+|.+|. +.+.++
T Consensus 195 ~~~~~~~~l~~~a~~~-G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 195 DIHKFTTGLAAACARL-GVQFRYGQEVTSIKTDGGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred CHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 3346778888888887 7888887 5999987666543 333333210 134789999999999984 434443
No 84
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.18 E-value=3.8e-09 Score=108.39 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=44.8
Q ss_pred eeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 158 ~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
.++...+...+.+.+.+. +++++.+ +|+++..+++. +.+.+++| ++++|.||.|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~---~~v~~~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREA-GAELLFNEPVTAIEADGDG---VTVTTADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHC-CCEEECCCEEEEEEeeCCe---EEEEeCCC---EEEeeEEEEecCcchh
Confidence 345567777787777776 7888877 59999876663 44556666 3679999999999864
No 85
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.17 E-value=5e-09 Score=109.02 Aligned_cols=60 Identities=37% Similarity=0.432 Sum_probs=44.7
Q ss_pred eechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 159 FHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 159 ~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
++...+...|.+.+.+. +++++.+ +|++++.+++.+.+|+ ++++ +++||.||.|+|.+|.
T Consensus 198 ~~p~~~~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~--t~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQL-GVKFRFNTPVDGLLVEGGRITGVQ--TGGG---VITADAYVVALGSYST 258 (416)
T ss_pred CCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCEEEEEE--eCCc---EEeCCEEEECCCcchH
Confidence 34457788888888876 7888877 5999987777654443 4444 3679999999999984
No 86
>PRK07121 hypothetical protein; Validated
Probab=99.17 E-value=9.7e-10 Score=116.68 Aligned_cols=65 Identities=26% Similarity=0.415 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEEc-CeEEEeecCCcccccc
Q 009785 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRS 228 (526)
Q Consensus 162 ~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~-~~~v~gv~v~~~~G~~~~i~a-~~vV~ADG~~S~vR~~ 228 (526)
..+.+.|.+.+++. +++++.++ ++++..+ ++++.||.+.. +++..+++| +.||.|+|.++.-+++
T Consensus 177 ~~~~~~L~~~~~~~-gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~em 244 (492)
T PRK07121 177 AMLMDPLAKRAAAL-GVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNREM 244 (492)
T ss_pred HHHHHHHHHHHHhC-CCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHHH
Confidence 35778888888876 78888775 9999876 46888998864 455567889 9999999999974333
No 87
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.16 E-value=3.7e-10 Score=115.52 Aligned_cols=144 Identities=29% Similarity=0.344 Sum_probs=74.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCccc--c--------------eeeCc------chHHHHHHcCCc
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--G--------------ELLQP------GGYLKLIELGLE 118 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~--g--------------~~l~~------~~~~~l~~lGl~ 118 (526)
|||+||||||+||+||+.|++.|.+|+|+||++....+.. | ..... --...|++++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999977542210 0 01110 011233333332
Q ss_pred chhhcccceeeeeeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEE
Q 009785 119 DCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKG 197 (526)
Q Consensus 119 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~g 197 (526)
+.+.-.. ..|........ ...||. +-.-..+.+.|++.+++. ++++++++ |.+++.+++++..
T Consensus 81 d~~~ff~---~~Gv~~~~~~~--gr~fP~----------s~~a~~Vv~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~~f~ 144 (409)
T PF03486_consen 81 DLIAFFE---ELGVPTKIEED--GRVFPK----------SDKASSVVDALLEELKRL-GVEIHFNTRVKSIEKKEDGVFG 144 (409)
T ss_dssp HHHHHHH---HTT--EEE-ST--TEEEET----------T--HHHHHHHHHHHHHHH-T-EEE-S--EEEEEEETTEEEE
T ss_pred HHHHHHH---hcCCeEEEcCC--CEECCC----------CCcHHHHHHHHHHHHHHc-CCEEEeCCEeeeeeecCCceeE
Confidence 2221110 01111110000 001110 111235778899988887 89999885 9999988886544
Q ss_pred EEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 198 VQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 198 v~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
|. .+++. ++.||.||.|+|+.|.
T Consensus 145 v~--~~~~~--~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 145 VK--TKNGG--EYEADAVILATGGKSY 167 (409)
T ss_dssp EE--ETTTE--EEEESEEEE----SSS
T ss_pred ee--ccCcc--cccCCEEEEecCCCCc
Confidence 44 43443 4779999999999884
No 88
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.15 E-value=3.9e-10 Score=118.14 Aligned_cols=164 Identities=23% Similarity=0.285 Sum_probs=93.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEecCCCCCCcc--cceeeCcchHHHHHHcCCcchhhccc-------------
Q 009785 62 DVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQID------------- 125 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G-~~V~l~Er~~~~~~~~--~g~~l~~~~~~~l~~lGl~~~l~~~~------------- 125 (526)
||||||||++|+++|+.++++| .+|+|+||.+...... .+..+........+..|+.+..+..-
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 9999999986543221 12223222222222333322111100
Q ss_pred -------ceeeeeeEEEECCeeeeec---CC-CcCCCC--CcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEee
Q 009785 126 -------AQRVFGYALFKDGNRTQIS---YP-LEKFHS--DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE 191 (526)
Q Consensus 126 -------~~~~~~~~~~~~~~~~~~~---~~-~~~~~~--~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~ 191 (526)
........++..+-..... .. ...... .+......-..+.+.|.+.+.+. +++++.++ +++++.+
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~-gv~i~~~~~v~~l~~~ 159 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKE-GIDTRLNSKVEDLIQD 159 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHc-CCEEEeCCEeeEeEEC
Confidence 0000000000000000000 00 000000 00000112246888898888887 68888885 9999875
Q ss_pred -CCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcccc
Q 009785 192 -KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLR 226 (526)
Q Consensus 192 -~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR 226 (526)
++++.+|++.+.+++...+.++.||.|+|.++.-.
T Consensus 160 ~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~ 195 (439)
T TIGR01813 160 DQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNK 195 (439)
T ss_pred CCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCH
Confidence 56788898887777666678999999999999743
No 89
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.15 E-value=8.1e-10 Score=118.29 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=56.8
Q ss_pred eeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCc-cccccccC
Q 009785 158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCN 231 (526)
Q Consensus 158 ~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S-~vR~~l~~ 231 (526)
.++..++...+.+.+.+. |++++++ +|+++..+++++.+|++.+ .+|+..+++|+.||.|+|.+| .+.+..+.
T Consensus 145 ~vdp~rl~~al~~~A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEH-GAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADL 220 (546)
T ss_pred EECHHHHHHHHHHHHHhC-CCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCC
Confidence 566678888888888887 6777777 5999988888888888865 455556789999999999998 45555543
No 90
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.14 E-value=4.4e-09 Score=109.10 Aligned_cols=68 Identities=19% Similarity=0.083 Sum_probs=44.8
Q ss_pred eechHHHHHHHHHHHcCCCeEEEec-eEEEEEee-CCeEEEEEEEeCCCcEEEEEcCeEEEeecCC-ccccccccCC
Q 009785 159 FHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEE-KGTIKGVQYKTKAGEELTAYAPLTIVCDGCF-SNLRRSLCNP 232 (526)
Q Consensus 159 ~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~-~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~-S~vR~~l~~~ 232 (526)
++...+...|.+.+.+. |++++.+ +|++++.+ ++.+.+| ++.+|. ++++.||.|.|++ +.+++.++..
T Consensus 180 v~p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~~~v--~t~~g~---i~a~~vVvaagg~~~~l~~~~g~~ 250 (407)
T TIGR01373 180 ARHDAVAWGYARGADRR-GVDIIQNCEVTGFIRRDGGRVIGV--ETTRGF---IGAKKVGVAVAGHSSVVAAMAGFR 250 (407)
T ss_pred CCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCCcEEEE--EeCCce---EECCEEEECCChhhHHHHHHcCCC
Confidence 44556777788888887 6888887 59999754 4544333 455563 6788765555545 5777776654
No 91
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.13 E-value=4.6e-10 Score=116.84 Aligned_cols=63 Identities=27% Similarity=0.403 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCcc
Q 009785 161 NGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 161 ~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
-..+...|.+.+++. +++++.++ ++++..++++|+||.+.+ .+|+..+++|+.||.|+|.++.
T Consensus 140 g~~~~~~l~~~~~~~-gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEA-GVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhc-CeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 356788999999998 59999885 999999999999999984 6788788999999999999996
No 92
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.13 E-value=1.2e-09 Score=115.74 Aligned_cols=65 Identities=26% Similarity=0.344 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccccc
Q 009785 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRR 227 (526)
Q Consensus 162 ~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~ 227 (526)
..+...|.+.+.+.++++++.++ ++++..+++.+.||.+.+. ++...++++.||.|+|++|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNR-ETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEEC-CcEEEEEcCEEEECCCcccCCCC
Confidence 36788899988876689999885 9999877788888887765 44456899999999999998654
No 93
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.11 E-value=5.8e-09 Score=107.67 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=51.6
Q ss_pred ceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCc-cccccccCC
Q 009785 157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP 232 (526)
Q Consensus 157 ~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S-~vR~~l~~~ 232 (526)
..++...+.+.|.+.+.+. +++++.+ +|+++..+++.+ .+.+.+| ++++|.||.|+|.+| .+.+.++.+
T Consensus 144 g~vd~~~l~~aL~~~~~~~-Gv~i~~~~~V~~i~~~~~~~---~V~~~~g---~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQAR-GGEIRLGAEVTALDEHANGV---VVRTTQG---EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEecCCeE---EEEECCC---EEEeCEEEECCCcchHHHHHHhCCC
Confidence 3556778899999999887 6888887 598888766643 3445555 377999999999999 466666653
No 94
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.11 E-value=1.4e-09 Score=117.13 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCcccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLR 226 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~vR 226 (526)
.+...|.+.+.+.++++++..+ ++++..+++.+.||.+.+ .+|+...++|+.||.|||++|.+-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 5777888888777789988775 999998888899988754 677767899999999999999763
No 95
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.10 E-value=1.7e-09 Score=116.79 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR 227 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~vR~ 227 (526)
.+...|.+.+.+. ++++++++ ++++..+++++.||.+.+ .+|+...++|+.||.|+|++|.+..
T Consensus 130 ~i~~~L~~~~~~~-gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 130 ALLHTLYEQCLKL-GVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHc-CCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence 4677888888777 79998885 999988888899988765 5677667899999999999997654
No 96
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.10 E-value=1.9e-09 Score=115.93 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+.++++++.++ ++++..++++|.||.+.+ .+|+...++|+.||.|||++|.+
T Consensus 133 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 133 HMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 5788888888776789988875 999998888999998754 57877789999999999999975
No 97
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=3.1e-09 Score=114.73 Aligned_cols=65 Identities=29% Similarity=0.329 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR 227 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~vR~ 227 (526)
.+...|.+.+.+..+++++.++ ++++..+++.+.||.+.+ .+|+...+.|+.||.|+|+.+.+..
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~ 204 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG 204 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence 4778888888775689998885 999988788898988755 5776667899999999999987644
No 98
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.09 E-value=2.5e-09 Score=115.71 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=91.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCCcccce---eeC----cc-hHH-HHH---Hc--CCcc--hh
Q 009785 60 DADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIVGE---LLQ----PG-GYL-KLI---EL--GLED--CV 121 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~--G~~V~l~Er~~~~~~~~~g~---~l~----~~-~~~-~l~---~l--Gl~~--~l 121 (526)
++||||||||+|||++|+.+++. |.+|+|+||.........+. .++ +. ..+ .++ +. ++.+ .+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 58999999999999999999998 99999999986422211100 111 10 111 111 11 1110 00
Q ss_pred hcc--------cceeeeeeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeC
Q 009785 122 EQI--------DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK 192 (526)
Q Consensus 122 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~ 192 (526)
..+ ......|..+...... .. ++ .......+....+...|.+.+++.++++++.++ ++++..++
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G-~~-~~-----~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~ 163 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENG-KY-VR-----RGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD 163 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCC-Cc-cc-----cCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC
Confidence 000 0000112222111000 00 00 000000123345777888888877679998885 99998777
Q ss_pred CeEEEEEEE-eCCCcEEEEEcCeEEEeecCCcc
Q 009785 193 GTIKGVQYK-TKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 193 ~~v~gv~v~-~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
+++.||.+. ..+|+...++|+.||.|+|+++.
T Consensus 164 g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 164 NRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred CEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 888888764 35676667899999999999885
No 99
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.07 E-value=2.3e-09 Score=112.77 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=54.8
Q ss_pred ceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCC-eEEEEEEE-eCCCcEEEEEcCeEEEeecCCc-cccccccCC
Q 009785 157 RGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKG-TIKGVQYK-TKAGEELTAYAPLTIVCDGCFS-NLRRSLCNP 232 (526)
Q Consensus 157 ~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~-~v~gv~v~-~~~G~~~~i~a~~vV~ADG~~S-~vR~~l~~~ 232 (526)
..++...+...|.+.+++. |++++++ +|+++.++++ .+. +++. ..+|+..+++||+||.|.|.+| .+++.++++
T Consensus 173 g~Vdp~~l~~aL~~~a~~~-Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQN-GTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EEECHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 4567788999999999887 7888888 4999987544 333 4433 2445444688999999999887 678888775
No 100
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.06 E-value=1.5e-09 Score=112.96 Aligned_cols=62 Identities=18% Similarity=0.331 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+.+.|.+.+.+..++++++++ ++++..+++++.||.+.. +++..++.|+.||.|+|+.+.+
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLK-DNKQINIYSKVTILATGGIGGL 191 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEE-CCcEEEEEcCeEEEccCccccc
Confidence 5778888888766689999885 999988778888877654 4554578899999999998754
No 101
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.06 E-value=3.6e-09 Score=113.19 Aligned_cols=164 Identities=21% Similarity=0.270 Sum_probs=91.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCccc--ceeeCc-----chH-HHHHH---c--CCc--chh
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQP-----GGY-LKLIE---L--GLE--DCV 121 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~--g~~l~~-----~~~-~~l~~---l--Gl~--~~l 121 (526)
...++||||||+|.|||++|+.+++.|.+|+|+||......... +..+.. ... ..++. . |+. +.+
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v 92 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAV 92 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 34579999999999999999999999999999999865322111 111110 001 11111 0 110 000
Q ss_pred hcc--------cceeeeeeEEEEC--CeeeeecCCCcCCCCCccccee------echHHHHHHHHHHHcCCCeEEEece-
Q 009785 122 EQI--------DAQRVFGYALFKD--GNRTQISYPLEKFHSDVAGRGF------HNGRFVQRLREKAASLPNVRLEQGT- 184 (526)
Q Consensus 122 ~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~a~~~~~v~i~~~~- 184 (526)
..+ ......|..+... +........ .....+.+ .-..+...|.+.+++. +++++.++
T Consensus 93 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~-----g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~-gV~i~~~~~ 166 (541)
T PRK07804 93 RSLVAEGPRAVRELVALGARFDESPDGRWALTREG-----GHSRRRIVHAGGDATGAEVQRALDAAVRAD-PLDIREHAL 166 (541)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccC-----CeecCeeEecCCCCCHHHHHHHHHHHHHhC-CCEEEECeE
Confidence 000 0000012211110 100000000 00000111 1235778888888877 58888885
Q ss_pred EEEEEeeC-CeEEEEEEEe-----CCCcEEEEEcCeEEEeecCCccccc
Q 009785 185 VTSLLEEK-GTIKGVQYKT-----KAGEELTAYAPLTIVCDGCFSNLRR 227 (526)
Q Consensus 185 v~~l~~~~-~~v~gv~v~~-----~~G~~~~i~a~~vV~ADG~~S~vR~ 227 (526)
++++..++ +.+.||.+.+ .++ ...+.|+.||.|+|++|.++.
T Consensus 167 v~~Li~~~~g~v~Gv~~~~~~~~~~~g-~~~i~Ak~VIlATGG~~~~~~ 214 (541)
T PRK07804 167 ALDLLTDGTGAVAGVTLHVLGEGSPDG-VGAVHAPAVVLATGGLGQLYA 214 (541)
T ss_pred eeeeEEcCCCeEEEEEEEeccCCCCCc-EEEEEcCeEEECCCCCCCCCC
Confidence 99998764 5888888762 333 356889999999999997654
No 102
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.06 E-value=9.8e-10 Score=118.01 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=49.3
Q ss_pred HHHHHHHHHHH---cCCCeEEEece-EEEEEeeCCeEEEEEEEe--C------------CCcEEEEEcCeEEEeecCCcc
Q 009785 163 RFVQRLREKAA---SLPNVRLEQGT-VTSLLEEKGTIKGVQYKT--K------------AGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 163 ~l~~~L~~~a~---~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~--~------------~G~~~~i~a~~vV~ADG~~S~ 224 (526)
.+...|.+.++ +.+++++++++ +++|+.++++|+||.+.+ . +++..++.|+-||.|+|.++.
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 35666666554 34569998885 999998888999998742 1 123457899999999999998
Q ss_pred ccccc
Q 009785 225 LRRSL 229 (526)
Q Consensus 225 vR~~l 229 (526)
..+++
T Consensus 229 n~em~ 233 (549)
T PRK12834 229 NHELV 233 (549)
T ss_pred CHHHH
Confidence 76544
No 103
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.04 E-value=3.4e-09 Score=111.70 Aligned_cols=153 Identities=22% Similarity=0.303 Sum_probs=94.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccee---eCcc-hHHHHHHcCC--cchhhcccceeeeeeE
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-IVGEL---LQPG-GYLKLIELGL--EDCVEQIDAQRVFGYA 133 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~-~~g~~---l~~~-~~~~l~~lGl--~~~l~~~~~~~~~~~~ 133 (526)
|||+|||||++|+.+|..+++.|.+|+|+|++...... .+.-. +..+ -.+.++.+|- ....+. ....+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~----~~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADK----AGLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHh----hceehe
Confidence 69999999999999999999999999999997432111 11100 1111 1122333321 111110 001111
Q ss_pred EEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEee-CCeEEEEEEEeCCCcEEEEEc
Q 009785 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEE-KGTIKGVQYKTKAGEELTAYA 212 (526)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~-~~~v~gv~v~~~~G~~~~i~a 212 (526)
.....+. + ........+++..+...+.+.+.+.+++++..++|+++..+ ++.+.+|.. .+|. .++|
T Consensus 77 ~ln~skg-----p----AV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t--~~G~--~I~A 143 (617)
T TIGR00136 77 VLNSSKG-----P----AVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVT--QDGL--KFRA 143 (617)
T ss_pred ecccCCC-----C----cccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEE--CCCC--EEEC
Confidence 1111000 0 00011135678888899999999999999998898888765 667777764 4565 4789
Q ss_pred CeEEEeecCCcccccccc
Q 009785 213 PLTIVCDGCFSNLRRSLC 230 (526)
Q Consensus 213 ~~vV~ADG~~S~vR~~l~ 230 (526)
+.||.|+|.++.=+-.+|
T Consensus 144 d~VILATGtfL~g~ihig 161 (617)
T TIGR00136 144 KAVIITTGTFLRGKIHIG 161 (617)
T ss_pred CEEEEccCcccCCCEEec
Confidence 999999999976444443
No 104
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.04 E-value=2.6e-09 Score=112.51 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=55.7
Q ss_pred cceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCe-EEEEEEE-eCCCcEEEEEcCeEEEeecCCc-cccccccC
Q 009785 156 GRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGT-IKGVQYK-TKAGEELTAYAPLTIVCDGCFS-NLRRSLCN 231 (526)
Q Consensus 156 ~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~-v~gv~v~-~~~G~~~~i~a~~vV~ADG~~S-~vR~~l~~ 231 (526)
+..++...+.+.|.+.+++.++++++.++ |+++..++++ +. |++. ..+|+..+++|++||.|.|++| .+++.+++
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi 255 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGI 255 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCC
Confidence 34567778999999999888668998885 9999875543 33 4443 2445434588999999999887 67777776
Q ss_pred C
Q 009785 232 P 232 (526)
Q Consensus 232 ~ 232 (526)
+
T Consensus 256 ~ 256 (494)
T PRK05257 256 P 256 (494)
T ss_pred C
Confidence 5
No 105
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.03 E-value=3.9e-09 Score=107.08 Aligned_cols=164 Identities=24% Similarity=0.296 Sum_probs=100.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCcc---------cceeeCcchH-------------HHHHH
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRI---------VGELLQPGGY-------------LKLIE 114 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G--~~V~l~Er~~~~~~~~---------~g~~l~~~~~-------------~~l~~ 114 (526)
+++||+|||||+.|+++|+.|++++ ++|+|+||........ .|....|+.. ++.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999998 9999999986543211 1111222211 11222
Q ss_pred cCCcchhhcccceeeeeeEEE--------------------------ECCeeeeecCCCcC-----CCCCcccceeechH
Q 009785 115 LGLEDCVEQIDAQRVFGYALF--------------------------KDGNRTQISYPLEK-----FHSDVAGRGFHNGR 163 (526)
Q Consensus 115 lGl~~~l~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 163 (526)
+++. ......+.+- .+.......-|.-. -...+.+..++...
T Consensus 82 ~~~~-------f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~ 154 (429)
T COG0579 82 LGIP-------FINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGE 154 (429)
T ss_pred hCCc-------ccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHH
Confidence 3311 0011011110 01111000001000 00123345677788
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCc-cccccccCCC
Q 009785 164 FVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLCNPK 233 (526)
Q Consensus 164 l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S-~vR~~l~~~~ 233 (526)
+...|.+.+.++ |++++.++ |+++++.++++ ..+.+.+|++. ++|++||.|.|..| ++-+..+++.
T Consensus 155 ~t~~l~e~a~~~-g~~i~ln~eV~~i~~~~dg~--~~~~~~~g~~~-~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 155 LTRALAEEAQAN-GVELRLNTEVTGIEKQSDGV--FVLNTSNGEET-LEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHHHHHHc-CCEEEecCeeeEEEEeCCce--EEEEecCCcEE-EEeeEEEECCchhHHHHHHHhCCCc
Confidence 899999999998 78888885 99999877752 23445677654 88999999999999 6777777654
No 106
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=2.8e-09 Score=114.57 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC-CCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~-~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. ++++++++ ++++..++++|+||.+.+. +|+...++|+.||.|+|+++.+
T Consensus 137 ~i~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 137 ALLHTLFERTSGL-NVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHhC-CCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 4677888888776 79998885 9999988899999988764 6666788999999999999854
No 107
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.02 E-value=5.6e-09 Score=113.15 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLE-EKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~-~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. +++++.++ ++++.. ++++|.||.+.+ .+|+...+.|+.||.|+|+++..
T Consensus 167 ~i~~~L~~~a~~~-gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 167 AMLHTLYGQSLKY-DCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred HHHHHHHHHHHhC-CCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 6788898888876 78998885 999887 678899998754 67887789999999999998853
No 108
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.01 E-value=4.5e-09 Score=112.91 Aligned_cols=64 Identities=25% Similarity=0.285 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcC-eEEEeecCCcccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRS 228 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~-~vV~ADG~~S~vR~~ 228 (526)
.+...|.+.+++. +++++.++ +++++.++++|+||.+.. +|+..+++|+ -||.|+|.++.-++.
T Consensus 209 ~~~~~L~~~~~~~-gv~v~~~t~v~~l~~~~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 209 ALAAGLRIGLQRA-GVPVLLNTPLTDLYVEDGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred HHHHHHHHHHHcC-CCEEEeCCEEEEEEEeCCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHH
Confidence 3556677777766 78988885 999998888999998864 5666778896 699999999875433
No 109
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=3.7e-09 Score=114.02 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEE-eCCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~-~~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. +++++..+ ++++..++++|.|+... ..+|+...+.|+.||.|+|+++.+
T Consensus 136 ~i~~~L~~~~~~~-gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 136 AILHELVNNLRRY-GVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHhhC-CCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 5778888888775 79988885 99998878888888764 357776678999999999999975
No 110
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=6.7e-09 Score=111.42 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCe-EEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGT-IKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~-v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. +++++.++ ++++..++++ |+||.+.+ .+|+...++|+.||.|+|+++.+
T Consensus 135 ~i~~~L~~~~~~~-gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~ 199 (543)
T PRK06263 135 EMMMGLMEYLIKE-RIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQL 199 (543)
T ss_pred HHHHHHHHHHhcC-CCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCC
Confidence 4677888888774 89998885 9999877665 88988776 77877789999999999999853
No 111
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.00 E-value=1.9e-08 Score=96.15 Aligned_cols=174 Identities=21% Similarity=0.170 Sum_probs=97.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceee----Ccc---------hHHHHHHcCCcchhhc
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELL----QPG---------GYLKLIELGLEDCVEQ 123 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l----~~~---------~~~~l~~lGl~~~l~~ 123 (526)
+.+..||+|||||+-|+++|+.|+++|.+++++|+-+.+..++.+... .+. +.+++++|--.+....
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 445689999999999999999999999999999998766554433221 111 1122222211111111
Q ss_pred ccceeeeeeEEEE------------------------CCeeeeecCCC-cCCCC------CcccceeechHHHHHHHHHH
Q 009785 124 IDAQRVFGYALFK------------------------DGNRTQISYPL-EKFHS------DVAGRGFHNGRFVQRLREKA 172 (526)
Q Consensus 124 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~-~~~~~------~~~~~~~~~~~l~~~L~~~a 172 (526)
.......+..... ..+.++-.||. ..++. +..+..+.-..-...|...+
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 0000000000000 01112222331 11111 12233455566778888888
Q ss_pred HcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCc--cccccccCCC
Q 009785 173 ASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS--NLRRSLCNPK 233 (526)
Q Consensus 173 ~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S--~vR~~l~~~~ 233 (526)
++. |+.++.++ |+.....+.....|.+.+.+|+. +.|+-+|.+.|++- -++..+++..
T Consensus 164 ~~~-G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~--Y~akkiI~t~GaWi~klL~~~~~~~~ 224 (399)
T KOG2820|consen 164 REL-GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSI--YHAKKIIFTVGAWINKLLPTSLAIGF 224 (399)
T ss_pred HHc-CeEEecCcceeeEeeccCCCceeEEEeccCCe--eecceEEEEecHHHHhhcCcccccCC
Confidence 888 78888885 66665433222346677888875 45999999999984 3444444443
No 112
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.00 E-value=6.9e-09 Score=112.52 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~-~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. +++++.++ ++++..+ +++|.||.+.+ .+|+...+.|+.||.|+|+++..
T Consensus 188 ~i~~~L~~~a~~~-gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 188 AMLHTLYGQAMKH-NTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHhC-CCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 5778888888776 78888775 8998865 67899998865 57887789999999999999864
No 113
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=4.5e-09 Score=114.26 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC-CCcEEEEEcCeEEEeecCCccc
Q 009785 166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 166 ~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~-~G~~~~i~a~~vV~ADG~~S~v 225 (526)
+.|.+.+.+. ++++++++ ++++..++++|.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus 174 ~~L~~~~~~~-gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAG-TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhc-CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 5566666654 79998885 9999987889999998764 6776778999999999999975
No 114
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=9.7e-09 Score=111.09 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~-~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. +++++.++ ++++..++ ++|.||.+.+ .+|+...+.|+.||.|+|+++..
T Consensus 150 ~i~~~L~~~~~~~-gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 150 AILHTLYQQSLKH-NAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHhhc-CCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 5778888888775 78988885 99998765 7899998754 67877789999999999999853
No 115
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.00 E-value=9.7e-09 Score=109.88 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC------CeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK------GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR 227 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~------~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~vR~ 227 (526)
.+...|.+.+.+.++++++.++ ++++..++ +++.||.+.+ .+|+...+.++.||.|+|+++.+..
T Consensus 139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL 211 (536)
T ss_pred HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence 5778888888887789999885 88887643 7899998865 4677778999999999999997654
No 116
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.99 E-value=1.5e-09 Score=115.54 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcC-eEEEeecCCccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRR 227 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~-~vV~ADG~~S~vR~ 227 (526)
.+...|.+.+.+.++++++.++ +++++.+++.|+||.+.. +|++.+++|+ -||.|+|.++.-.+
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~ 239 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDD 239 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHH
Confidence 3666677777666689998885 999998888999998865 5666788996 78888888876533
No 117
>PRK08275 putative oxidoreductase; Provisional
Probab=98.99 E-value=8.8e-09 Score=110.73 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~-~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+.+.|.+.+.+. ++++++++ ++++..+ ++.+.||.+.+ .+|+...+.|+.||.|+|+.+.+
T Consensus 138 ~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRA-RVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHC-CCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 5778888888775 79998885 9999876 67788888654 57776678999999999998864
No 118
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.98 E-value=7.5e-09 Score=108.14 Aligned_cols=155 Identities=22% Similarity=0.309 Sum_probs=83.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeE-EEECC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA-LFKDG 138 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~-~~~~~ 138 (526)
..+|+||||||+||++|..|.+.|++|+|+||+......- ...+..-. +.+++....... ...-+. +..+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W---~~~~~~~~--d~~~~~~~~~~~---~s~~Y~~L~tn~ 81 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLW---VYTPKSES--DPLSLDPTRSIV---HSSVYESLRTNL 81 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCccee---ecCCCcCC--CccccCCCCccc---chhhhhhhhccC
Confidence 5789999999999999999999999999999996532110 01111100 011111000000 000000 00000
Q ss_pred eeeee---cCCCcC-C-CCC-cccceeechHHHHHHHHHHHcCCCeE--EEec-eEEEEEeeCCeEEEEEEEeCCCcEEE
Q 009785 139 NRTQI---SYPLEK-F-HSD-VAGRGFHNGRFVQRLREKAASLPNVR--LEQG-TVTSLLEEKGTIKGVQYKTKAGEELT 209 (526)
Q Consensus 139 ~~~~~---~~~~~~-~-~~~-~~~~~~~~~~l~~~L~~~a~~~~~v~--i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~ 209 (526)
..... .+|... . ... .......+.++.+.|.+.+... ++. ++++ +|+++...++++. |+.++.++...+
T Consensus 82 p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~f-gl~~~I~~~t~V~~V~~~~~~w~-V~~~~~~~~~~~ 159 (461)
T PLN02172 82 PRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREF-KIEEMVRFETEVVRVEPVDGKWR-VQSKNSGGFSKD 159 (461)
T ss_pred CHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHc-CCcceEEecCEEEEEeecCCeEE-EEEEcCCCceEE
Confidence 00000 112110 0 000 0011224567889999998887 454 6666 5999987666543 554443344345
Q ss_pred EEcCeEEEeecCCcc
Q 009785 210 AYAPLTIVCDGCFSN 224 (526)
Q Consensus 210 i~a~~vV~ADG~~S~ 224 (526)
..+|.||.|+|..+.
T Consensus 160 ~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 160 EIFDAVVVCNGHYTE 174 (461)
T ss_pred EEcCEEEEeccCCCC
Confidence 679999999998763
No 119
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.98 E-value=1.4e-08 Score=109.07 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcC-eEEEeecCCcccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRRS 228 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~-~vV~ADG~~S~vR~~ 228 (526)
.+...|.+.+++. +++++.++ +++++.++++|+||.+.. +|+..++.|+ -||.|+|.++.-.++
T Consensus 209 ~l~~~l~~~~~~~-gv~i~~~~~v~~Li~~~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~em 274 (557)
T PRK12844 209 ALIGRMLEAALAA-GVPLWTNTPLTELIVEDGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAEM 274 (557)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHHH
Confidence 4666777888776 78988885 999998889999998864 5666778894 799999999974433
No 120
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.97 E-value=1.5e-08 Score=108.58 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEc-CeEEEeecCCcccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRS 228 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a-~~vV~ADG~~S~vR~~ 228 (526)
.+...|.+.+++. +++++.++ ++++..++++|+||.+.. +|.+..+.+ +-||.|+|.++...++
T Consensus 218 ~l~~~L~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 218 ALAAGLFAGVLRA-GIPIWTETSLVRLTDDGGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHHHHHHHHHHHC-CCEEEecCEeeEEEecCCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHH
Confidence 3556777777776 78988885 999987778999998765 454556777 6899999999986443
No 121
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.97 E-value=1.1e-08 Score=108.72 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+.+.|.+.+. .++++++++ ++++..+++.+.||.+.+.+|+...++|+.||.|+|+++.+
T Consensus 131 ~i~~~L~~~~~--~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 131 NLLEHLLQELV--PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred HHHHHHHHHHh--cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 46777887775 379998885 89998778888899887777877778999999999999864
No 122
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.3e-08 Score=110.62 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCC------------CeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLP------------NVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~------------~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+.+ +++++.++ ++++..+++.+.||.+.+ .+|+...+.|+.||.|+|+.+..
T Consensus 139 ~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 139 ELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred HHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence 56777887776652 38998885 999988788898887654 57776778999999999997754
No 123
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.96 E-value=1.5e-08 Score=106.13 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=55.1
Q ss_pred cceeechHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEE-eCCCcEEEEEcCeEEEeecCCc-cccccccC
Q 009785 156 GRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYK-TKAGEELTAYAPLTIVCDGCFS-NLRRSLCN 231 (526)
Q Consensus 156 ~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~-~~~v~gv~v~-~~~G~~~~i~a~~vV~ADG~~S-~vR~~l~~ 231 (526)
+..++...+.+.|.+.+.+.+++++++++ |+++.++ ++.+. +.++ ..+|+..+++||+||.|.|.+| .+.+.++.
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi 256 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGI 256 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCC
Confidence 34577788999999988766689998885 9998876 55443 4433 3445333578999999999999 56777776
Q ss_pred C
Q 009785 232 P 232 (526)
Q Consensus 232 ~ 232 (526)
+
T Consensus 257 ~ 257 (497)
T PRK13339 257 P 257 (497)
T ss_pred C
Confidence 5
No 124
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=1.2e-08 Score=110.16 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~-~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. +++++.++ ++++..+ ++++.||.+.+ .+|+...+.|+.||.|+|+.+.+
T Consensus 149 ~l~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 149 ALLHTLYQQNVAA-KTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHhc-CCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 5778888888775 78888885 8998865 57899998864 56776778999999999999864
No 125
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=1.6e-08 Score=109.30 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCC---CeEEEece-EEEEEee-CCeEEEEEEEeC-CCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLP---NVRLEQGT-VTSLLEE-KGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~---~v~i~~~~-v~~l~~~-~~~v~gv~v~~~-~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+.+ +++++.++ ++++..+ +++|.||.+.+. +|+...+.|+.||.|+|+.+.+
T Consensus 134 ~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 134 QLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII 202 (589)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence 46777877776542 37787774 8888864 678999998764 5666678999999999999964
No 126
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.95 E-value=1.3e-08 Score=111.02 Aligned_cols=62 Identities=16% Similarity=0.272 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. +++++.++ ++++..+++++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 159 ~l~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKL-GVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhC-CCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 3556787777766 78988885 999998888999999876 68887788999999999999865
No 127
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=8.8e-09 Score=111.10 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~-~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. +++++.++ ++++..+ +++|.||.+.+ .+|+...++|+.||.|+|+++.+
T Consensus 144 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 144 ALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHhhhc-CCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 5778888877765 78888875 9999874 68899998754 57877789999999999999864
No 128
>PLN02815 L-aspartate oxidase
Probab=98.95 E-value=1.2e-08 Score=109.66 Aligned_cols=164 Identities=18% Similarity=0.262 Sum_probs=91.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCccc--ceeeC----c-chH-HHHHH---cC--Cc-ch-hh
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV--GELLQ----P-GGY-LKLIE---LG--LE-DC-VE 122 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~--g~~l~----~-~~~-~~l~~---lG--l~-~~-l~ 122 (526)
..++||||||+|.|||++|+.+++.| +|+|+||.+....... +..++ + ... ..++. .| +. +. ++
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 44689999999999999999999999 9999999865332111 11111 0 011 11111 01 10 00 00
Q ss_pred cc--------cceeeeeeEEEECCeeeeecCCCcCCCCCccccee-----echHHHHHHHHHHHcCCCeEEEece-EEEE
Q 009785 123 QI--------DAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGF-----HNGRFVQRLREKAASLPNVRLEQGT-VTSL 188 (526)
Q Consensus 123 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l 188 (526)
.+ ......|..+...... ..... ........+.+ .-..+...|.+.+.+.+++++++++ ++++
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g-~~~~~--~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~L 182 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDG-NLHLA--REGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDL 182 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCC-Ccccc--CCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhee
Confidence 00 0000112222111000 00000 00000000111 1124778888888777789998885 8998
Q ss_pred Eee-CC---eEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 189 LEE-KG---TIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 189 ~~~-~~---~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
..+ ++ .|.||.+.+ .+|+...+.|+.||.|+|+.+.+
T Consensus 183 i~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 183 LTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred eeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 865 33 288988754 57877788999999999999864
No 129
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.94 E-value=7.9e-08 Score=98.96 Aligned_cols=63 Identities=25% Similarity=0.271 Sum_probs=46.5
Q ss_pred ceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccc
Q 009785 157 RGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 157 ~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
..++...+...|.+.+.+.+...+...+ +..+..+. . .+.+.+.+|+ ++|+.||.|+|.++..
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~--~~~v~t~~g~---i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-R--VVGVETDGGT---IEADKVVLAAGAWAGE 214 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-c--EEEEEeCCcc---EEeCEEEEcCchHHHH
Confidence 3456678889999999998656666564 77777652 2 3556677775 6799999999999864
No 130
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.93 E-value=1.8e-08 Score=107.80 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC--CeEEEEEEEeCCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK--GTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~--~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+.+++++++++ ++++..++ +.|.||.+.. +|....+.|+.||.|+|+++..
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~AkaVILATGG~~~~ 199 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRAGAVILATGGGGQV 199 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEcCEEEEcCCCCccc
Confidence 5778888888776689999885 99998653 7889988764 6666678999999999998753
No 131
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.93 E-value=1.5e-08 Score=109.29 Aligned_cols=62 Identities=26% Similarity=0.325 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEEcC-eEEEeecCCccccc
Q 009785 164 FVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNLRR 227 (526)
Q Consensus 164 l~~~L~~~a~~~~~v~i~~~~-v~~l~~~-~~~v~gv~v~~~~G~~~~i~a~-~vV~ADG~~S~vR~ 227 (526)
+...|.+.+++. +++++.++ +++|+.+ +++|+||.+.. +|+..+++|+ -||.|+|.++.-.+
T Consensus 215 ~~~~l~~~~~~~-gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~e 279 (584)
T PRK12835 215 LVARLRLALKDA-GVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMD 279 (584)
T ss_pred HHHHHHHHHHhC-CceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHH
Confidence 444566666654 89999885 9999975 57899998865 5666778997 69999999997443
No 132
>PRK12839 hypothetical protein; Provisional
Probab=98.93 E-value=3.1e-08 Score=106.40 Aligned_cols=62 Identities=27% Similarity=0.379 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 162 ~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~-~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
..+...|.+.+.+. +++++.++ ++++..+ +++|+||.+...+|+...+.++.||.|+|+++.
T Consensus 214 ~~l~~~L~~~a~~~-Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 214 TALTGRLLRSADDL-GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHC-CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 45677788888877 78988885 9998764 678999998877776444455899999999997
No 133
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=2.1e-08 Score=108.42 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC----CeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK----GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~----~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. +++++.++ ++++..++ +++.||.+.+ .+|+...++|+.||.|+|+.+.+
T Consensus 141 ~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 141 MILQTLYQNCVKH-GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHhc-CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 5778888888766 78988885 99988654 7888998754 56776678999999999999865
No 134
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.91 E-value=3.4e-08 Score=106.70 Aligned_cols=61 Identities=28% Similarity=0.367 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcC-eEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAP-LTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~-~vV~ADG~~S~v 225 (526)
.+...|.+.+++. +++++.++ |+++..++++|++|.+.+.+++ .++.++ .||.|+|.++.-
T Consensus 215 ~l~~~L~~~~~~~-Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~-~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 215 ALAARLAKSALDL-GIPILTGTPARELLTEGGRVVGARVIDAGGE-RRITARRGVVLACGGFSHD 277 (574)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEEcCCce-EEEEeCCEEEEcCCCccch
Confidence 3556677777776 78888885 9999988888999988765554 457785 799999999843
No 135
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.91 E-value=2e-08 Score=105.77 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=45.4
Q ss_pred ceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 157 RGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 157 ~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
..++...+...|.+.+++. ++++++++ |+++.. ++. +.+.+++|+ ++||.||.|+|++|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~-Gv~i~~~t~V~~i~~-~~~---~~v~t~~g~---v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALEL-GVEIHENTPMTGLEE-GQP---AVVRTPDGQ---VTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHc-CCEEECCCeEEEEee-CCc---eEEEeCCcE---EECCEEEEccccccc
Confidence 4566778999999988887 78888885 888875 232 334556663 679999999999974
No 136
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.91 E-value=1e-08 Score=118.77 Aligned_cols=166 Identities=25% Similarity=0.270 Sum_probs=93.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc--cceeeCcchHHHHHHcCCcchhhcc-----------
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQI----------- 124 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~--~g~~l~~~~~~~l~~lGl~~~l~~~----------- 124 (526)
+.++||||||+|.||++||+.+++.|.+|+|+||.+...... .+..++..+.+.-++.|+.+..+.+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~~ 486 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGG 486 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccCC
Confidence 457999999999999999999999999999999986543321 1112222111222222322111000
Q ss_pred ----------cce--------eeeeeEEEE---CCeeeeecCCCc-CCCCCcccceee-chHHHHHHHHHHHcC--CCeE
Q 009785 125 ----------DAQ--------RVFGYALFK---DGNRTQISYPLE-KFHSDVAGRGFH-NGRFVQRLREKAASL--PNVR 179 (526)
Q Consensus 125 ----------~~~--------~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~L~~~a~~~--~~v~ 179 (526)
... ...|..+.. .+.. ..+.. .......+.... -..+...|.+.+++. .+++
T Consensus 487 ~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~---~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~ 563 (1167)
T PTZ00306 487 HCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGA---SRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVT 563 (1167)
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCC---CCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcE
Confidence 000 001111100 0000 00000 000000000011 123556666666542 5799
Q ss_pred EEece-EEEEEeeC---------CeEEEEEEEeC---CCcEEEEEcCeEEEeecCCcccc
Q 009785 180 LEQGT-VTSLLEEK---------GTIKGVQYKTK---AGEELTAYAPLTIVCDGCFSNLR 226 (526)
Q Consensus 180 i~~~~-v~~l~~~~---------~~v~gv~v~~~---~G~~~~i~a~~vV~ADG~~S~vR 226 (526)
+++++ +++++.++ ++|+||.+.+. +|+...+.|+-||.|+|+++.-.
T Consensus 564 i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 564 IMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDH 623 (1167)
T ss_pred EEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCc
Confidence 99885 99999753 27999999876 88878899999999999999743
No 137
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.91 E-value=1.9e-08 Score=108.71 Aligned_cols=61 Identities=28% Similarity=0.382 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEc-CeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a-~~vV~ADG~~S~v 225 (526)
.+...|.+.+++. +++++.++ |++++.+++++++|.+...++ ..++++ +.||.|+|.++.-
T Consensus 218 ~l~~~L~~~a~~~-Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~-~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 218 ALVARLLKSAEDL-GVRIWESAPARELLREDGRVAGAVVETPGG-LQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred HHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEEEEEEEECCc-EEEEEeCCEEEEcCCCcccC
Confidence 4667888888887 78888885 999988788899998876554 456889 9999999999863
No 138
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.90 E-value=2.7e-08 Score=104.77 Aligned_cols=59 Identities=27% Similarity=0.366 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRR 227 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~ 227 (526)
.+.+.|.+.+++. ++++.+++++++..+++++.+|.+ +|+ .+.++.||.|+|.+|....
T Consensus 121 ~i~~~L~~~~~~~-gv~i~~~~v~~l~~~~g~v~Gv~~---~g~--~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 121 HIIKILYKHAREL-GVNFIRGFAEELAIKNGKAYGVFL---DGE--LLKFDATVIATGGFSGLFK 179 (466)
T ss_pred HHHHHHHHHHHhc-CCEEEEeEeEEEEeeCCEEEEEEE---CCE--EEEeCeEEECCCcCcCCCC
Confidence 5788888888776 788877778888877777777765 343 4779999999999998654
No 139
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.88 E-value=1.1e-07 Score=89.03 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=97.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC------CeEEEEecCCCCCCc-cc-c----eeeCcchHHHHHHc------CCcchh
Q 009785 60 DADVIVVGAGVAGAALANTLAKDG------RRVHVIERDLSEPDR-IV-G----ELLQPGGYLKLIEL------GLEDCV 121 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G------~~V~l~Er~~~~~~~-~~-g----~~l~~~~~~~l~~l------Gl~~~l 121 (526)
...|+|||||+.|.++|++|++++ ..++|+|...-.... +. + ..-++.-...|..+ ++.+++
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 368999999999999999999998 899999987532211 11 1 11122211222211 222222
Q ss_pred hcccceeeeeeEEE---------ECCeeeeecCCC-----------cCCCCCcccceeechHHHHHHHHHHHcCCCeEEE
Q 009785 122 EQIDAQRVFGYALF---------KDGNRTQISYPL-----------EKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLE 181 (526)
Q Consensus 122 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~ 181 (526)
+.....+|+.. .+......+-.. ...+.......+|...|.+.++..+.+.++|++.
T Consensus 90 ---dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv 166 (380)
T KOG2852|consen 90 ---DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLV 166 (380)
T ss_pred ---cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEE
Confidence 22222333221 111100000000 0011222334688899999999999999999999
Q ss_pred eceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 182 QGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 182 ~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
.|+|.++..+..++.++-...+.+.......+.+|.+.|.|+.
T Consensus 167 ~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 167 FGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred EeeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 9999999766666665554433344455678999999999984
No 140
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.86 E-value=6.5e-09 Score=96.79 Aligned_cols=136 Identities=21% Similarity=0.203 Sum_probs=71.8
Q ss_pred EEECCCHHHHHHHHHHHhCCCe-EEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCeeee
Q 009785 64 IVVGAGVAGAALANTLAKDGRR-VHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQ 142 (526)
Q Consensus 64 vIVGaG~aGl~~A~~La~~G~~-V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 142 (526)
+||||||+|+++|..|.++|.+ |+|+||++.....-.. .+.. ..+. .... ......+ .+-
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~---~~~~------~~~~----~~~~-~~~~~~~-~~~---- 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR---YYSY------TRLH----SPSF-FSSDFGL-PDF---- 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC---H-TT------TT-B----SSSC-CTGGSS---CC----
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE---eCCC------Cccc----cCcc-ccccccC-Ccc----
Confidence 6999999999999999999999 9999999653322110 0000 0000 0000 0000000 000
Q ss_pred ecCCCcCCCC-CcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeec
Q 009785 143 ISYPLEKFHS-DVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG 220 (526)
Q Consensus 143 ~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG 220 (526)
..+.....+. ........+.++.+.|.+.+++. ++.++.++ |+++..++++ .+++..++. +++|+.||.|+|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~i~~~~~V~~v~~~~~~---w~v~~~~~~--~~~a~~VVlAtG 135 (203)
T PF13738_consen 62 ESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERF-GLEIRFNTRVESVRRDGDG---WTVTTRDGR--TIRADRVVLATG 135 (203)
T ss_dssp CHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHT-TGGEETS--EEEEEEETTT---EEEEETTS---EEEEEEEEE---
T ss_pred cccccccCCCCCCCcccCCHHHHHHHHHHHHhhc-CcccccCCEEEEEEEeccE---EEEEEEecc--eeeeeeEEEeee
Confidence 0000000000 00111245667888888888887 66688774 9999988875 445667773 577999999999
Q ss_pred CCcc
Q 009785 221 CFSN 224 (526)
Q Consensus 221 ~~S~ 224 (526)
..|.
T Consensus 136 ~~~~ 139 (203)
T PF13738_consen 136 HYSH 139 (203)
T ss_dssp SSCS
T ss_pred ccCC
Confidence 8764
No 141
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.85 E-value=4.3e-08 Score=97.09 Aligned_cols=113 Identities=25% Similarity=0.346 Sum_probs=75.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
|||+|||||++|+++|..|++.|.+|+|+|+... .|..... ..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-----gg~~~~~------------~~~------------------- 44 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-----GGQLTTT------------TEV------------------- 44 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-----Ccceeec------------ccc-------------------
Confidence 6899999999999999999999999999998741 1110000 000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeec
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG 220 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG 220 (526)
..+| .+.. .+....+...+.+.+.+. +++++.++|+++..+++. +.+...+|. ++++|+||.|+|
T Consensus 45 --~~~~--~~~~-----~~~~~~~~~~l~~~~~~~-gv~~~~~~v~~v~~~~~~---~~v~~~~~~--~~~~d~liiAtG 109 (300)
T TIGR01292 45 --ENYP--GFPE-----GISGPELMEKMKEQAVKF-GAEIIYEEVIKVDLSDRP---FKVKTGDGK--EYTAKAVIIATG 109 (300)
T ss_pred --cccC--CCCC-----CCChHHHHHHHHHHHHHc-CCeEEEEEEEEEEecCCe---eEEEeCCCC--EEEeCEEEECCC
Confidence 0001 0000 122235667788877777 688877778888776553 334455554 477999999999
Q ss_pred CCcc
Q 009785 221 CFSN 224 (526)
Q Consensus 221 ~~S~ 224 (526)
....
T Consensus 110 ~~~~ 113 (300)
T TIGR01292 110 ASAR 113 (300)
T ss_pred CCcc
Confidence 8653
No 142
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.7e-08 Score=96.76 Aligned_cols=114 Identities=26% Similarity=0.362 Sum_probs=75.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRR-VHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~-V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
+.+||+||||||+||+||+++++.|.+ ++|+|+... . | ++ .... .
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-g----g---~~---------~~~~--------~--------- 47 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-G----G---QL---------TKTT--------D--------- 47 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-C----C---cc---------ccce--------e---------
Confidence 358999999999999999999999999 777776631 1 0 00 0000 0
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEE
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ 217 (526)
...+| .+.. .+.-..+.+.+.+++... ++++...+|.++...++ ..++++.+|+ ++|+.||.
T Consensus 48 ----venyp--g~~~-----~~~g~~L~~~~~~~a~~~-~~~~~~~~v~~v~~~~~---~F~v~t~~~~---~~ak~vIi 109 (305)
T COG0492 48 ----VENYP--GFPG-----GILGPELMEQMKEQAEKF-GVEIVEDEVEKVELEGG---PFKVKTDKGT---YEAKAVII 109 (305)
T ss_pred ----ecCCC--CCcc-----CCchHHHHHHHHHHHhhc-CeEEEEEEEEEEeecCc---eEEEEECCCe---EEEeEEEE
Confidence 00111 0001 123346778888888765 78888877888776654 2456677775 66999999
Q ss_pred eecCCcc
Q 009785 218 CDGCFSN 224 (526)
Q Consensus 218 ADG~~S~ 224 (526)
|+|....
T Consensus 110 AtG~~~~ 116 (305)
T COG0492 110 ATGAGAR 116 (305)
T ss_pred CcCCccc
Confidence 9998764
No 143
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.85 E-value=1.3e-07 Score=90.33 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=58.7
Q ss_pred eeechHHHHHHHHHHHcCCCeEEEeceEEEEEee----------CC-------eEEEEEEEeCCCcEEEEEcCeEEEeec
Q 009785 158 GFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEE----------KG-------TIKGVQYKTKAGEELTAYAPLTIVCDG 220 (526)
Q Consensus 158 ~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~----------~~-------~v~gv~v~~~~G~~~~i~a~~vV~ADG 220 (526)
.++...|.+.+++.+... ++.+..|+|++++.+ ++ ++.+|.++-.|+...+++++++|.|.|
T Consensus 239 wfdpw~LLs~~rrk~~~l-Gv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAG 317 (509)
T KOG2853|consen 239 WFDPWALLSGIRRKAITL-GVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAG 317 (509)
T ss_pred ccCHHHHHHHHHHHhhhh-cceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccC
Confidence 356778999999999998 788888888888754 23 355677777777777899999999999
Q ss_pred CCc-cccccccCC
Q 009785 221 CFS-NLRRSLCNP 232 (526)
Q Consensus 221 ~~S-~vR~~l~~~ 232 (526)
++| .+.+..++.
T Consensus 318 a~s~QvArlAgIG 330 (509)
T KOG2853|consen 318 AWSGQVARLAGIG 330 (509)
T ss_pred ccHHHHHHHhccC
Confidence 999 677777765
No 144
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.84 E-value=4.1e-08 Score=104.45 Aligned_cols=62 Identities=21% Similarity=0.376 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+.++++++.++ ++++..++++|.||.+.+.++ ...+.|+.||.|+|+.+..
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~-~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGG-PVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCe-EEEEECCEEEEcCCCCcCC
Confidence 5778888888776689999885 999887778888988776433 4568899999999998853
No 145
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.84 E-value=1.6e-08 Score=109.21 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEc-CeEEEeecCCccccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYA-PLTIVCDGCFSNLRRSL 229 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a-~~vV~ADG~~S~vR~~l 229 (526)
.+...|.+.+++. +++++.++ ++++..++++|.+|.+.. +|+..++.+ +.||.|+|.++...+++
T Consensus 222 ~l~~aL~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 222 ALIGRLLYSLRAR-GVRILTQTDVESLETDHGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHH
Confidence 4677788888876 78888885 999987788899988764 565667886 78999999999864443
No 146
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.84 E-value=1.6e-08 Score=102.35 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=75.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc-c-------cceeeCcchHHHHHHcCCcc-hhhcccceeeee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-I-------VGELLQPGGYLKLIELGLED-CVEQIDAQRVFG 131 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~-~-------~g~~l~~~~~~~l~~lGl~~-~l~~~~~~~~~~ 131 (526)
.||+|||||++|+.+|+.|+++|++|+|+|+++..... . .......++...+...|++. .++..+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgsl---- 78 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSL---- 78 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcch----
Confidence 48999999999999999999999999999987654221 0 11123344556677788774 33332210
Q ss_pred eEEEECCeeeeecCCCcCCCCCccc-ceeechHHHHHHHHHHHcCCCeEEEeceEEEEE
Q 009785 132 YALFKDGNRTQISYPLEKFHSDVAG-RGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL 189 (526)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~ 189 (526)
.+..... .. .+..+ ..++|..+.+.|.+.+.+.++++++.++|+++.
T Consensus 79 --~~~aad~--~~-------vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~ 126 (436)
T PRK05335 79 --IMEAADA--HR-------VPAGGALAVDREGFSEYVTEALENHPLITVIREEVTEIP 126 (436)
T ss_pred --heecccc--cC-------CCCccceecCHHHHHHHHHHHHHcCCCcEEEccchhccc
Confidence 0111100 00 11122 356888899999999999999999877787775
No 147
>PLN02612 phytoene desaturase
Probab=98.83 E-value=1.3e-06 Score=94.07 Aligned_cols=62 Identities=27% Similarity=0.351 Sum_probs=48.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCccc------c------e----eeCcchHHHHHHcCCcchh
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV------G------E----LLQPGGYLKLIELGLEDCV 121 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~------g------~----~l~~~~~~~l~~lGl~~~l 121 (526)
..+|+|||||++||++|+.|+++|++|+|+|++.....+.. | . ...++.++.++++|+.+.+
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~ 170 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRL 170 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccc
Confidence 57899999999999999999999999999999865433211 1 1 1246678899999996543
No 148
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.83 E-value=3.7e-08 Score=103.42 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=50.9
Q ss_pred eeechHHHHHHHHHHHc----CC-CeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCc-ccccccc
Q 009785 158 GFHNGRFVQRLREKAAS----LP-NVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS-NLRRSLC 230 (526)
Q Consensus 158 ~~~~~~l~~~L~~~a~~----~~-~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S-~vR~~l~ 230 (526)
.++...+...|.+.+++ .+ +++++.++ |+++..+++.+ +.+.+.+| +++||.||.|.|++| .+-+.++
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~--~~V~T~~G---~i~A~~VVvaAG~~S~~La~~~G 281 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSL--YKIHTNRG---EIRARFVVVSACGYSLLFAQKMG 281 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCe--EEEEECCC---EEEeCEEEECcChhHHHHHHHhC
Confidence 46677888999998887 53 27788775 99998775543 33455666 378999999999999 4566666
Q ss_pred C
Q 009785 231 N 231 (526)
Q Consensus 231 ~ 231 (526)
.
T Consensus 282 i 282 (497)
T PTZ00383 282 Y 282 (497)
T ss_pred C
Confidence 4
No 149
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.81 E-value=4.6e-08 Score=105.15 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=73.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
..|||+||||||||+++|..|++.|++|+|+|++.. .|..... ..+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~-----GG~~~~~------------~~i----------------- 48 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF-----GGQITIT------------SEV----------------- 48 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-----CceEEec------------ccc-----------------
Confidence 359999999999999999999999999999998631 1110000 000
Q ss_pred eeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEe
Q 009785 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (526)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~A 218 (526)
..++. . ..+....+.+.+.+.+.+. ++++..++|+++..+++. ..+...+|+ +.++.+|.|
T Consensus 49 ----~~~pg--~------~~~~~~~l~~~l~~~~~~~-gv~~~~~~V~~i~~~~~~---~~V~~~~g~---~~a~~lVlA 109 (555)
T TIGR03143 49 ----VNYPG--I------LNTTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFDGDI---KTIKTARGD---YKTLAVLIA 109 (555)
T ss_pred ----ccCCC--C------cCCCHHHHHHHHHHHHHHc-CCEEeccEEEEEEecCCE---EEEEecCCE---EEEeEEEEC
Confidence 00110 0 0112335667777777776 688877778888765432 234444553 568999999
Q ss_pred ecCCccc
Q 009785 219 DGCFSNL 225 (526)
Q Consensus 219 DG~~S~v 225 (526)
+|++...
T Consensus 110 TGa~p~~ 116 (555)
T TIGR03143 110 TGASPRK 116 (555)
T ss_pred CCCccCC
Confidence 9997643
No 150
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.80 E-value=5.8e-08 Score=105.04 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHc---CCCeEEEece-EEEEEee-CCeEEEEEEEeC-CCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAAS---LPNVRLEQGT-VTSLLEE-KGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~---~~~v~i~~~~-v~~l~~~-~~~v~gv~v~~~-~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+ .+++++++++ ++++..+ +++|.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 344555544433 3579998885 9999865 458999998763 6776778999999999998865
No 151
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.80 E-value=2.2e-08 Score=105.86 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
...|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 34699999999999999999999999999999986
No 152
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.80 E-value=4.6e-08 Score=103.15 Aligned_cols=36 Identities=33% Similarity=0.379 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+.+|||+||||||+|+.+|..|++.|.+|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 346999999999999999999999999999999874
No 153
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.79 E-value=3.5e-08 Score=100.78 Aligned_cols=34 Identities=47% Similarity=0.634 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
+||+|||||++|+++|+.|+++|.+|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999853
No 154
>PLN02487 zeta-carotene desaturase
Probab=98.79 E-value=2.7e-06 Score=90.85 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=48.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCccc------ce------e----eCcchHHHHHHcCCcchhh
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV------GE------L----LQPGGYLKLIELGLEDCVE 122 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~------g~------~----l~~~~~~~l~~lGl~~~l~ 122 (526)
..+|+|||||++||++|+.|+++|++|+|+|+++....... |. . ..++..+.++++|+.+.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 35899999999999999999999999999999876543211 11 1 2356778899999986543
No 155
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.79 E-value=3.5e-08 Score=106.23 Aligned_cols=61 Identities=23% Similarity=0.164 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC---CeEEEEEEEe-CCCcEEEEEcCeEEEeecCCcc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEK---GTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~---~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
.+...+...+.+. +++++.++ ++++..++ ++|.||.+.+ .+|+...+.|+.||.|+|+++.
T Consensus 127 ~~~r~l~~~l~~~-~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 127 SYKPIVAEAAKNA-LGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred hHHHHHHHHHHhC-CCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 3445555555554 56787774 99998754 6899998855 5777778999999999999974
No 156
>PRK07233 hypothetical protein; Provisional
Probab=98.78 E-value=2e-06 Score=90.03 Aligned_cols=59 Identities=37% Similarity=0.373 Sum_probs=45.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc-----ee----------eCcchHHHHHHcCCcch
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG-----EL----------LQPGGYLKLIELGLEDC 120 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g-----~~----------l~~~~~~~l~~lGl~~~ 120 (526)
+|+|||||++||++|+.|+++|++|+|+|+++....+... .. -.+...+.++++|+.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~ 74 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDK 74 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCc
Confidence 5999999999999999999999999999999876543311 10 12344677888887644
No 157
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.78 E-value=9.1e-07 Score=93.14 Aligned_cols=60 Identities=32% Similarity=0.360 Sum_probs=46.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCccc------------ce----eeCcchHHHHHHcCCcchh
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV------------GE----LLQPGGYLKLIELGLEDCV 121 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~------------g~----~l~~~~~~~l~~lGl~~~l 121 (526)
+|+|||||++||++|+.|+++|++|+|+|+++....+.. |. ...++.++.++++|+.+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 76 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRL 76 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccce
Confidence 489999999999999999999999999999875443211 11 1246778899999986543
No 158
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=6.7e-08 Score=99.40 Aligned_cols=140 Identities=21% Similarity=0.188 Sum_probs=82.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchH----HHHHHcCCcchhhcccceeeeeeEEE
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGY----LKLIELGLEDCVEQIDAQRVFGYALF 135 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~----~~l~~lGl~~~l~~~~~~~~~~~~~~ 135 (526)
.-+|+||||||+||++|..|.++|++|+++||.......- ...+..- ...+.+ .- .
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW---~y~~~~~~~~ss~Y~~l------~t-----------n 65 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW---KYTENVEVVHSSVYKSL------RT-----------N 65 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE---eecCcccccccchhhhh------hc-----------c
Confidence 4689999999999999999999999999999996532110 0111000 000000 00 0
Q ss_pred ECCee-eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCC-CeEEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEE
Q 009785 136 KDGNR-TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLP-NVRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEELTAY 211 (526)
Q Consensus 136 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~-~v~i~~~~-v~~l~~~~-~~v~gv~v~~~~G~~~~i~ 211 (526)
...+. ....+|.. .....+.-++.++.+.|.+.|+..+ ...+.+++ |..+...+ +.+. |...+..+...+.-
T Consensus 66 ~pKe~~~~~dfpf~---~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~-V~~~~~~~~~~~~i 141 (448)
T KOG1399|consen 66 LPKEMMGYSDFPFP---ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWR-VTTKDNGTQIEEEI 141 (448)
T ss_pred CChhhhcCCCCCCc---ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCcee-EEEecCCcceeEEE
Confidence 00000 00111211 1111122355689999999998873 23566664 88888776 5654 55555443223445
Q ss_pred cCeEEEeecCCc
Q 009785 212 APLTIVCDGCFS 223 (526)
Q Consensus 212 a~~vV~ADG~~S 223 (526)
+|.||.|+|.+.
T Consensus 142 fd~VvVctGh~~ 153 (448)
T KOG1399|consen 142 FDAVVVCTGHYV 153 (448)
T ss_pred eeEEEEcccCcC
Confidence 999999999983
No 159
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.76 E-value=1.3e-07 Score=100.94 Aligned_cols=113 Identities=26% Similarity=0.342 Sum_probs=76.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
...+||+||||||+|+++|..|+++|++|+|+|+.. |..+.. ..++. +
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~-------GG~~~~-------~~~~~------------------~ 256 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF-------GGQVLD-------TMGIE------------------N 256 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-------CCeeec-------cCccc------------------c
Confidence 346999999999999999999999999999997641 111100 00000 0
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
...++ .....++.+.|.+.+++. +++++.+ +|+++..+++. +.+...+|+ ++++|.||
T Consensus 257 ----~~~~~-----------~~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~~~~---~~V~~~~g~--~i~a~~vV 315 (517)
T PRK15317 257 ----FISVP-----------ETEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPAAGL---IEVELANGA--VLKAKTVI 315 (517)
T ss_pred ----cCCCC-----------CCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCe---EEEEECCCC--EEEcCEEE
Confidence 00000 012346778888888887 6888877 59898876543 334455665 46799999
Q ss_pred EeecCCc
Q 009785 217 VCDGCFS 223 (526)
Q Consensus 217 ~ADG~~S 223 (526)
.|+|..+
T Consensus 316 iAtG~~~ 322 (517)
T PRK15317 316 LATGARW 322 (517)
T ss_pred ECCCCCc
Confidence 9999976
No 160
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.75 E-value=2e-07 Score=105.57 Aligned_cols=162 Identities=23% Similarity=0.290 Sum_probs=87.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc--c---ce--eeCc--chHH-HHHHc-----CCc--chh
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--V---GE--LLQP--GGYL-KLIEL-----GLE--DCV 121 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~--~---g~--~l~~--~~~~-~l~~l-----Gl~--~~l 121 (526)
.++||+|||||.+||++|+.+++.|.+|+|+||........ . |. .+.+ ...+ .++.. |+. +.+
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~v 91 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRTV 91 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHHH
Confidence 46899999999999999999999999999999986421100 0 10 0111 0111 11110 111 001
Q ss_pred hc--------ccceeeeeeEEEE--CCeeeeecCCCc-CCC-CCcccceeechHHHHHHHHHHHcC---CCeEEEece-E
Q 009785 122 EQ--------IDAQRVFGYALFK--DGNRTQISYPLE-KFH-SDVAGRGFHNGRFVQRLREKAASL---PNVRLEQGT-V 185 (526)
Q Consensus 122 ~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~L~~~a~~~---~~v~i~~~~-v 185 (526)
.. +......|..+.. +|......+... .+. ... .-..+...|.+.+.+. .++.+.... +
T Consensus 92 ~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~-----tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~ 166 (897)
T PRK13800 92 YQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMP-----EGKDVKKALYRVLRQRSMRERIRIENRLMP 166 (897)
T ss_pred HHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCC-----CchhHHHHHHHHHHHhhhcCCcEEEeceee
Confidence 10 0000111222211 111100000000 000 000 1123445555555443 267777664 7
Q ss_pred EEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 186 TSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 186 ~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
+++..+++++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 167 ~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 167 VRVLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred EEEEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccccC
Confidence 88887788899998754 67887889999999999999865
No 161
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.75 E-value=4.8e-06 Score=87.90 Aligned_cols=61 Identities=25% Similarity=0.405 Sum_probs=46.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCCCCCccc-----cee-------e---CcchHHHHHHcCCcchh
Q 009785 61 ADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSEPDRIV-----GEL-------L---QPGGYLKLIELGLEDCV 121 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~----G~~V~l~Er~~~~~~~~~-----g~~-------l---~~~~~~~l~~lGl~~~l 121 (526)
.||+|||||++||++|+.|+++ |++|+|+|+++....+.. |.. + .+...+.++++|+.+.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~ 82 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL 82 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence 6899999999999999999999 999999999976543321 111 1 23366788889987544
No 162
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.75 E-value=9.4e-08 Score=96.39 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCC-eEEEEEEEeCCCcEEEEEcCeEEEeecCCccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKG-TIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRR 227 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~-~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~ 227 (526)
.+...|.+++++.|++++.++. +.++..+++ .+.||.+.+.+++..+++++.||.|+|+-+.+=+
T Consensus 134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccccc
Confidence 5788999999999999999995 888888777 5668988776556678999999999999887633
No 163
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.73 E-value=2.8e-06 Score=90.64 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~l 229 (526)
.+.+.|.+.+++. +++++.++ |+++..+++++++|+ ..+|+ ++.||.||.|.+....+.+.+
T Consensus 220 ~l~~al~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~V~--~~~g~--~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 220 ALVAAMAKLAEDL-GGELRLNAEVIRIETEGGRATAVH--LADGE--RLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHC-CCEEEECCeEEEEEeeCCEEEEEE--ECCCC--EEECCEEEECCcHHHHHHHhc
Confidence 5677788888877 67888884 999987777665554 45665 367999999998766665544
No 164
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.72 E-value=1.4e-07 Score=99.53 Aligned_cols=34 Identities=38% Similarity=0.565 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+|||+||||||+|+++|..|+++|.+|+|+||..
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 5999999999999999999999999999999874
No 165
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.71 E-value=4.2e-06 Score=88.29 Aligned_cols=61 Identities=26% Similarity=0.348 Sum_probs=46.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCccc------cee----------eCcchHHHHHHcCCcchhh
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV------GEL----------LQPGGYLKLIELGLEDCVE 122 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~------g~~----------l~~~~~~~l~~lGl~~~l~ 122 (526)
+|+|||||++||++|+.|+++|++|+|+|+++....+.. |.. ..++..+.++++|+.+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~ 77 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLL 77 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccccc
Confidence 489999999999999999999999999999876543211 110 1345667888899876543
No 166
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.70 E-value=2.7e-08 Score=94.18 Aligned_cols=162 Identities=22% Similarity=0.323 Sum_probs=97.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc--cceeeCcchHHHHHHcCCcchhhcccceeee---------
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGELLQPGGYLKLIELGLEDCVEQIDAQRVF--------- 130 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~--~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~--------- 130 (526)
+|+|||+|.|||+++..+-..|-.|+|+|+........ ...+++....+..+.+++.|..+-+......
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 69999999999999999998887899999997655433 2344666666666666665443221111000
Q ss_pred -----------eeEEEECCee-eee---------cCC--CcCCCCCcccceeechHHHHHHHHHHHcCCC-eEEEec-eE
Q 009785 131 -----------GYALFKDGNR-TQI---------SYP--LEKFHSDVAGRGFHNGRFVQRLREKAASLPN-VRLEQG-TV 185 (526)
Q Consensus 131 -----------~~~~~~~~~~-~~~---------~~~--~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~-v~i~~~-~v 185 (526)
... |..++. ..+ ..| .....+.+.+.-+- ..|...|.+.+.+.|. +.+... +|
T Consensus 91 Lm~~La~~S~~Ave-wL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~-~~L~~~l~k~as~~pe~~ki~~nskv 168 (477)
T KOG2404|consen 91 LMEKLAANSASAVE-WLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIV-KALSTRLKKKASENPELVKILLNSKV 168 (477)
T ss_pred HHHHHHhcCHHHHH-HHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHH-HHHHHHHHHhhhcChHHHhhhhccee
Confidence 000 000000 000 000 00001111111110 1233344444444443 455545 69
Q ss_pred EEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccc
Q 009785 186 TSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 186 ~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
+++..++++|.||++.+.+|+...+.++-||.|+|+++.-
T Consensus 169 v~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ys 208 (477)
T KOG2404|consen 169 VDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYS 208 (477)
T ss_pred eeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcC
Confidence 9999999999999999999998888899999999999854
No 167
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.70 E-value=1.7e-07 Score=97.54 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEecCCCC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRR-VHVIERDLSE 95 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~-V~l~Er~~~~ 95 (526)
..+||+|||||++|+++|+.|.+.|.+ ++|+||+...
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence 468999999999999999999999999 9999999643
No 168
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.69 E-value=1.2e-07 Score=100.79 Aligned_cols=170 Identities=21% Similarity=0.276 Sum_probs=92.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc--e----eeC-c-----chHHHH-HH-c----CC--
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVG--E----LLQ-P-----GGYLKL-IE-L----GL-- 117 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g--~----~l~-~-----~~~~~l-~~-l----Gl-- 117 (526)
..++||||||||.|||.+|+.++..|.+|+|+||.......... . .+. . .+.+.+ .. . ++
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 34699999999999999999999999999999998654432210 0 010 0 011111 00 0 00
Q ss_pred cchhhcccce--------eeeeeEE--EECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EE
Q 009785 118 EDCVEQIDAQ--------RVFGYAL--FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VT 186 (526)
Q Consensus 118 ~~~l~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~ 186 (526)
.+.+..+... ...+..+ +.+|......+.............-.-..+...|.+++.+..++++.... ++
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 0111110000 0011111 01111111111100000000000011234778888888886566777664 88
Q ss_pred EEEeeCCe-EEEEEEEe-CCCcEEEEEcCeEEEeecCCccccc
Q 009785 187 SLLEEKGT-IKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRR 227 (526)
Q Consensus 187 ~l~~~~~~-v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~vR~ 227 (526)
++..+++. +.|+...+ .+|+...++++-||.|+|+...+.+
T Consensus 164 ~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~ 206 (562)
T COG1053 164 DLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYP 206 (562)
T ss_pred hheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEe
Confidence 98865444 77777665 6788778889999999999985433
No 169
>PRK14694 putative mercuric reductase; Provisional
Probab=98.68 E-value=2.6e-07 Score=97.57 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
+|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 699999999999999999999999999999986
No 170
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.67 E-value=9.5e-08 Score=100.79 Aligned_cols=35 Identities=49% Similarity=0.650 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
+|||+||||||+|+++|+.|+++|.+|+|+||+..
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~ 39 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN 39 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 59999999999999999999999999999999743
No 171
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.67 E-value=2e-07 Score=95.08 Aligned_cols=115 Identities=28% Similarity=0.341 Sum_probs=72.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-----ccee---eCcchHHHHHHcCCcc-hhhcccceeeee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-----VGEL---LQPGGYLKLIELGLED-CVEQIDAQRVFG 131 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~-----~g~~---l~~~~~~~l~~lGl~~-~l~~~~~~~~~~ 131 (526)
.+|+|||||++|+.+|+.|+++|++|+|+|+++...... .++. ...++...++..|++. .++..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~----- 75 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSS----- 75 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCe-----
Confidence 379999999999999999999999999999876532110 0111 2233455566667653 2322211
Q ss_pred eEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEE
Q 009785 132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL 189 (526)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~ 189 (526)
..........+ + ......++|..+.+.+.+.+.+.+++++..+.|+++.
T Consensus 76 -l~~~~ad~~~I--p------agg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~ 124 (433)
T TIGR00137 76 -LIITAADRHAV--P------AGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIP 124 (433)
T ss_pred -eeeehhhhhCC--C------CCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEc
Confidence 11111111000 1 1113456888999999999999999998877777665
No 172
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.66 E-value=3e-07 Score=96.36 Aligned_cols=34 Identities=44% Similarity=0.625 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+|||+||||||+|+++|+.|+++|.+|+|+|+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 5999999999999999999999999999999974
No 173
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.66 E-value=2.1e-07 Score=95.98 Aligned_cols=141 Identities=19% Similarity=0.255 Sum_probs=76.8
Q ss_pred EEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc--cce----eeCcchH-HHHHHcCCc-ch----hhcccc-----
Q 009785 64 IVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI--VGE----LLQPGGY-LKLIELGLE-DC----VEQIDA----- 126 (526)
Q Consensus 64 vIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~--~g~----~l~~~~~-~~l~~lGl~-~~----l~~~~~----- 126 (526)
+|||||++|+++|+.|+++|.+|+|+||++...... .|. ..+.... +..+..+-. +. +.....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999987644321 110 0111111 111111100 00 000000
Q ss_pred -eeeeeeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCC
Q 009785 127 -QRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKA 204 (526)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~ 204 (526)
....+..+..... ...+| ..-....+.+.|.+.+++. +++++.++ |+++..+++. +.+.. +
T Consensus 81 ~~~~~Gv~~~~~~~--g~~~p----------~~~~a~~v~~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~---~~v~~-~ 143 (400)
T TIGR00275 81 FFESLGLELKVEED--GRVFP----------CSDSAADVLDALLNELKEL-GVEILTNSKVKSIKKDDNG---FGVET-S 143 (400)
T ss_pred HHHHcCCeeEEecC--CEeEC----------CCCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCe---EEEEE-C
Confidence 0000111100000 00011 0012346778888888877 78888874 8888766553 23333 3
Q ss_pred CcEEEEEcCeEEEeecCCc
Q 009785 205 GEELTAYAPLTIVCDGCFS 223 (526)
Q Consensus 205 G~~~~i~a~~vV~ADG~~S 223 (526)
+. ++.+|.||.|+|.+|
T Consensus 144 ~~--~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 144 GG--EYEADKVILATGGLS 160 (400)
T ss_pred Cc--EEEcCEEEECCCCcc
Confidence 33 467999999999988
No 174
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.65 E-value=3.3e-07 Score=97.75 Aligned_cols=113 Identities=27% Similarity=0.360 Sum_probs=74.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
...+||+||||||+|+++|..|++.|++|+|+|... |..+.. ..++. .
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~-------GG~~~~-------~~~~~----~-------------- 257 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI-------GGQVKD-------TVGIE----N-------------- 257 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-------CCcccc-------CcCcc----c--------------
Confidence 346999999999999999999999999999997531 111000 00000 0
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
....+ .....++...+.+.+++. ++.++.+ +|+++..+++. +.+...+|+ ++.+|.+|
T Consensus 258 ----~~~~~-----------~~~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~~~~---~~v~~~~g~--~i~~d~lI 316 (515)
T TIGR03140 258 ----LISVP-----------YTTGSQLAANLEEHIKQY-PIDLMENQRAKKIETEDGL---IVVTLESGE--VLKAKSVI 316 (515)
T ss_pred ----ccccC-----------CCCHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEecCCe---EEEEECCCC--EEEeCEEE
Confidence 00000 012345677788887776 7888876 58888765543 344455665 47799999
Q ss_pred EeecCCc
Q 009785 217 VCDGCFS 223 (526)
Q Consensus 217 ~ADG~~S 223 (526)
.|+|...
T Consensus 317 lAtGa~~ 323 (515)
T TIGR03140 317 VATGARW 323 (515)
T ss_pred ECCCCCc
Confidence 9999874
No 175
>PRK07208 hypothetical protein; Provisional
Probab=98.64 E-value=8.3e-07 Score=94.17 Aligned_cols=40 Identities=35% Similarity=0.435 Sum_probs=35.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~ 97 (526)
++..||+|||||++||++|+.|+++|++|+|+|+++....
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4567999999999999999999999999999999876544
No 176
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.64 E-value=3.9e-06 Score=88.65 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=45.2
Q ss_pred cEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCCCCCcccc-----ee-------e---CcchHHHHHHcCCcch
Q 009785 62 DVIVVGAGVAGAALANTLAKD------GRRVHVIERDLSEPDRIVG-----EL-------L---QPGGYLKLIELGLEDC 120 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~------G~~V~l~Er~~~~~~~~~g-----~~-------l---~~~~~~~l~~lGl~~~ 120 (526)
+|+|||||++||++|+.|++. |.+|+|+|+++....+... .. + ++...+.++++|+.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~ 82 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEE 82 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccc
Confidence 699999999999999999986 4899999999876554321 11 1 2445677889998754
Q ss_pred h
Q 009785 121 V 121 (526)
Q Consensus 121 l 121 (526)
+
T Consensus 83 ~ 83 (463)
T PRK12416 83 M 83 (463)
T ss_pred e
Confidence 4
No 177
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.63 E-value=2.9e-07 Score=97.08 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+|||+||||||+|+++|..++++|.+|+|+|++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5999999999999999999999999999999753
No 178
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.62 E-value=3.7e-07 Score=95.75 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
+|||+||||||+|+++|+.++++|.+|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 599999999999999999999999999999985
No 179
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.62 E-value=2.7e-07 Score=97.58 Aligned_cols=33 Identities=39% Similarity=0.460 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEec
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIER 91 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er 91 (526)
.+|||+||||||+|+++|+.+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 369999999999999999999999999999998
No 180
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.62 E-value=3.8e-07 Score=95.31 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee--CCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE--KGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~--~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~l 229 (526)
.+.+.|.+.+++. +++++.++ |+++..+ ++.+++|.... ++ .+++++.||.|+|.++..++.+
T Consensus 124 ~l~~~L~~~a~~~-Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~-~~--~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 124 ALTNALYSSAERL-GVEIRYGIAVDRIPPEAFDGAHDGPLTTV-GT--HRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHc-CCEEEeCCEEEEEEecCCCCeEEEEEEcC-Cc--EEEEcCEEEEcCCCcccCHHHH
Confidence 5778888888887 78888885 9999876 56677766532 22 4578999999999998866554
No 181
>PLN02507 glutathione reductase
Probab=98.61 E-value=4.4e-07 Score=96.30 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
.+|||+||||||+|+.+|..++++|.+|+|+|+.
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3699999999999999999999999999999973
No 182
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.61 E-value=1.5e-06 Score=80.97 Aligned_cols=36 Identities=39% Similarity=0.589 Sum_probs=32.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~ 96 (526)
.+|+|||+||+|+++|+.|+..|++|+|+||.....
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvG 37 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVG 37 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcc
Confidence 369999999999999999999999999999986543
No 183
>PRK13748 putative mercuric reductase; Provisional
Probab=98.57 E-value=7.8e-07 Score=96.30 Aligned_cols=34 Identities=38% Similarity=0.465 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
.+|||+||||||+|+++|..|+++|.+|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3699999999999999999999999999999987
No 184
>PRK06116 glutathione reductase; Validated
Probab=98.57 E-value=4.3e-07 Score=95.45 Aligned_cols=34 Identities=44% Similarity=0.580 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
.+|||+||||||+|+++|+.|+++|.+|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999999999986
No 185
>PRK10262 thioredoxin reductase; Provisional
Probab=98.56 E-value=9.7e-07 Score=88.48 Aligned_cols=113 Identities=16% Similarity=0.234 Sum_probs=70.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
..+||+||||||+|+++|..|+++|++|+++|+.. .. | .+... ...
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~g----g-~~~~~-------------------~~~--------- 50 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KG----G-QLTTT-------------------TEV--------- 50 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CC----C-ceecC-------------------ceE---------
Confidence 35899999999999999999999999999999652 11 1 01000 000
Q ss_pred eeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEe
Q 009785 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (526)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~A 218 (526)
..++. .. ..+....+.+.+.+.+... +..+..++|+++...++. +++..+++ ++.+|.||.|
T Consensus 51 ----~~~~~-----~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~---~~v~~~~~---~~~~d~vilA 112 (321)
T PRK10262 51 ----ENWPG-----DP--NDLTGPLLMERMHEHATKF-ETEIIFDHINKVDLQNRP---FRLTGDSG---EYTCDALIIA 112 (321)
T ss_pred ----CCCCC-----CC--CCCCHHHHHHHHHHHHHHC-CCEEEeeEEEEEEecCCe---EEEEecCC---EEEECEEEEC
Confidence 00110 00 0112234566777777666 456767777777665553 33433333 3679999999
Q ss_pred ecCCc
Q 009785 219 DGCFS 223 (526)
Q Consensus 219 DG~~S 223 (526)
+|.+.
T Consensus 113 tG~~~ 117 (321)
T PRK10262 113 TGASA 117 (321)
T ss_pred CCCCC
Confidence 99875
No 186
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.56 E-value=2.5e-06 Score=89.67 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee--C--CeEEEEEEEeCCC--cEEEEEcCeEEEeecCCcc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEE--K--GTIKGVQYKTKAG--EELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~--~--~~v~gv~v~~~~G--~~~~i~a~~vV~ADG~~S~ 224 (526)
.+..-|.+.++++ ||+++.++ |+++..+ + +.|+++.+..++. .......|+||.+.|+...
T Consensus 227 SLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 227 SLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 5667788888888 89999885 9999864 3 4688888865222 2223458999999998754
No 187
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.54 E-value=6.8e-07 Score=93.62 Aligned_cols=34 Identities=41% Similarity=0.662 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+|||+||||||+|+++|..|++.|.+|+|+||+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 5999999999999999999999999999999985
No 188
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.54 E-value=3.2e-05 Score=80.29 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=36.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~ 97 (526)
|+++|||||||+|.+|+.+|..|++.|.+|+++||+.....
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence 34579999999999999999999999999999999976544
No 189
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.54 E-value=5.2e-06 Score=87.64 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLR 226 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR 226 (526)
.+.+.+.+.+++. +++++.++ ++++..+++.+ .+...+|+..++.+|.||.|.|......
T Consensus 212 ~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~v---~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 212 EVSKVVAKALKKK-GVKILTNTKVTAVEKNDDQV---VYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCEE---EEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 3455666677776 79998884 88887666643 3444556445688999999999887653
No 190
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.53 E-value=8.3e-07 Score=93.72 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
++|||+||||||+|+++|+.|+++|.+|+|+|++
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3599999999999999999999999999999986
No 191
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.51 E-value=6.5e-07 Score=95.02 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=76.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCeee
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT 141 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 141 (526)
.|+|||||++||++|..|.+.|++++++||++.... .-..+.-..-..-.+++.+ ..+....
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG-----~W~~~~~~~~g~~~~y~sl-------------~~n~sk~ 64 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG-----LWRYTENPEDGRSSVYDSL-------------HTNTSKE 64 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG-----GGCHSTTCCCSEGGGSTT--------------B-SS-GG
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc-----cCeeCCcCCCCccccccce-------------EEeeCch
Confidence 699999999999999999999999999999965321 1110000000000000000 0000000
Q ss_pred eecCCCcCCCCC-cccceeechHHHHHHHHHHHcCCC-eEEEece-EEEEEeeCCe--EEEEEEEe-CCCcEEEEEcCeE
Q 009785 142 QISYPLEKFHSD-VAGRGFHNGRFVQRLREKAASLPN-VRLEQGT-VTSLLEEKGT--IKGVQYKT-KAGEELTAYAPLT 215 (526)
Q Consensus 142 ~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~~a~~~~~-v~i~~~~-v~~l~~~~~~--v~gv~v~~-~~G~~~~i~a~~v 215 (526)
...|. +++.+ ......++.++.+.|.+.++..+- -.+++++ |+++.+.++. ...+++.. .+|+..+-..|.|
T Consensus 65 ~~~fs--dfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~V 142 (531)
T PF00743_consen 65 MMAFS--DFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAV 142 (531)
T ss_dssp GSCCT--TS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEE
T ss_pred HhcCC--CcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeE
Confidence 11111 11100 011235778899999999987632 2466675 9999875421 11233333 4565555568999
Q ss_pred EEeecCCcc
Q 009785 216 IVCDGCFSN 224 (526)
Q Consensus 216 V~ADG~~S~ 224 (526)
|.|+|.++.
T Consensus 143 vvatG~~~~ 151 (531)
T PF00743_consen 143 VVATGHFSK 151 (531)
T ss_dssp EEEE-SSSC
T ss_pred EEcCCCcCC
Confidence 999999983
No 192
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.51 E-value=3.3e-05 Score=77.83 Aligned_cols=41 Identities=41% Similarity=0.529 Sum_probs=36.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI 99 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~ 99 (526)
+..||||||||.+||++|+.|.+.|++|+|+|-+.....|.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCcee
Confidence 35899999999999999999999999999999987765543
No 193
>PRK06370 mercuric reductase; Validated
Probab=98.50 E-value=5.6e-06 Score=87.36 Aligned_cols=37 Identities=46% Similarity=0.555 Sum_probs=33.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
|+.+|||+||||||+|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3456999999999999999999999999999999863
No 194
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.46 E-value=2e-06 Score=86.73 Aligned_cols=77 Identities=22% Similarity=0.205 Sum_probs=60.2
Q ss_pred cceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCc-cccccccCC
Q 009785 156 GRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFS-NLRRSLCNP 232 (526)
Q Consensus 156 ~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S-~vR~~l~~~ 232 (526)
|.-++-+.+.+.|.+.+.+.++++++.++ |+++.+.+++-..|.+.+ .+|+..+++|++|+...|+.| ++-+..+++
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP 254 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence 44567788999999999998899999885 999998766533466654 567778899999999999998 555555653
No 195
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=6.8e-07 Score=91.10 Aligned_cols=146 Identities=23% Similarity=0.272 Sum_probs=88.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC-cccceeeCc----chHHHHHHcCCc-chhhcccceeeeee
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-RIVGELLQP----GGYLKLIELGLE-DCVEQIDAQRVFGY 132 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~-~~~g~~l~~----~~~~~l~~lGl~-~~l~~~~~~~~~~~ 132 (526)
..|||+|||||-||+-||++.+|.|.+++|+--+...-. -+|.-.+.. .-++.++.||=. ....+ ..+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D-----~~~- 76 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAAD-----KAG- 76 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhh-----hcC-
Confidence 359999999999999999999999999999987753211 111100000 000111112110 00000 000
Q ss_pred EEEECCeeeeecCCCcCCCCCccc----ceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCC-eEEEEEEEeCCCcE
Q 009785 133 ALFKDGNRTQISYPLEKFHSDVAG----RGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKG-TIKGVQYKTKAGEE 207 (526)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~-~v~gv~v~~~~G~~ 207 (526)
+.+..-+....+.- ...++..+...+++.+...+|..++++.|+++..+++ .|.||. +.+|.
T Consensus 77 ----------IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~--t~~G~- 143 (621)
T COG0445 77 ----------IQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVV--TADGP- 143 (621)
T ss_pred ----------CchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEE--eCCCC-
Confidence 11111111111111 1345566777788888888999999999999987655 577765 56676
Q ss_pred EEEEcCeEEEeecCCcc
Q 009785 208 LTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 208 ~~i~a~~vV~ADG~~S~ 224 (526)
.+.|+.||.++|-+=.
T Consensus 144 -~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 144 -EFHAKAVVLTTGTFLR 159 (621)
T ss_pred -eeecCEEEEeeccccc
Confidence 4679999999997643
No 196
>PRK14727 putative mercuric reductase; Provisional
Probab=98.44 E-value=2.9e-06 Score=89.80 Aligned_cols=35 Identities=34% Similarity=0.455 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.++||+||||||+|+++|..|+++|.+|+|+||+.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 36999999999999999999999999999999874
No 197
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.44 E-value=3.5e-07 Score=68.63 Aligned_cols=32 Identities=44% Similarity=0.604 Sum_probs=28.9
Q ss_pred EECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 009785 65 VVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (526)
Q Consensus 65 IVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~ 96 (526)
|||||++||++|+.|+++|++|+|+|+++...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999997644
No 198
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.42 E-value=1.1e-06 Score=92.29 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
+|||+||||||+|+++|+.|++.|.+|+|+||+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 599999999999999999999999999999986
No 199
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.42 E-value=4.8e-06 Score=82.44 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEee--CCeEEEEEEEeCCCc--EEEEEcCeEEEeecCCcc
Q 009785 164 FVQRLREKAASLPNVRLEQGT-VTSLLEE--KGTIKGVQYKTKAGE--ELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 164 l~~~L~~~a~~~~~v~i~~~~-v~~l~~~--~~~v~gv~v~~~~G~--~~~i~a~~vV~ADG~~S~ 224 (526)
.....+..+.+.++.+++.++ |+++..+ ++++++|++.+.++. ...+.++.||.|.|+-..
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T 259 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT 259 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC
Confidence 334444456677799999885 9999654 788999999998876 556779999999997543
No 200
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.40 E-value=2.7e-06 Score=89.72 Aligned_cols=145 Identities=19% Similarity=0.234 Sum_probs=75.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchH---HHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGY---LKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~---~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
||+||||||+|+.+|..++++|.+|+|+||+.. .|..++.+-+ ..+....+.+.+.... ..|... ...
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~-----gG~c~~~gciPsK~l~~~a~~~~~~~~~~---~~g~~~-~~~ 73 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGL-----GGAAVLTDCVPSKTLIATAEVRTELRRAA---ELGIRF-IDD 73 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC-----CCcccccCCcchHHHHHHHHHHHHHHHHH---hCCccc-ccC
Confidence 799999999999999999999999999998742 2222222111 1221111111111100 001000 000
Q ss_pred eeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEE--eeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLL--EEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~--~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
......++ ..... .. .+ ...+...+.+.+.+. +++++.++++.+. .+++ .+++.+.+|+..++.+|.||
T Consensus 74 ~~~~~~~~--~~~~~-~~-~~-~~~~~~~~~~~l~~~-gV~~~~g~~~~~~~~~~~~---~v~V~~~~g~~~~~~~d~lV 144 (466)
T PRK07845 74 GEARVDLP--AVNAR-VK-AL-AAAQSADIRARLERE-GVRVIAGRGRLIDPGLGPH---RVKVTTADGGEETLDADVVL 144 (466)
T ss_pred cccccCHH--HHHHH-HH-HH-HHHHHHHHHHHHHHC-CCEEEEEEEEEeecccCCC---EEEEEeCCCceEEEecCEEE
Confidence 00000000 00000 00 00 011223344555555 7999999876643 3334 35565666764568899999
Q ss_pred EeecCCcc
Q 009785 217 VCDGCFSN 224 (526)
Q Consensus 217 ~ADG~~S~ 224 (526)
.|+|....
T Consensus 145 iATGs~p~ 152 (466)
T PRK07845 145 IATGASPR 152 (466)
T ss_pred EcCCCCCC
Confidence 99999764
No 201
>PTZ00058 glutathione reductase; Provisional
Probab=98.38 E-value=1.1e-06 Score=94.02 Aligned_cols=34 Identities=35% Similarity=0.607 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
.+|||+||||||+|.++|..+++.|.+|+|+||+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 5799999999999999999999999999999986
No 202
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.38 E-value=4e-07 Score=84.49 Aligned_cols=32 Identities=41% Similarity=0.693 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998874
No 203
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.38 E-value=6.5e-06 Score=87.07 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=45.3
Q ss_pred cCCCeEEEece-EEEEEeeC---CeEEEEEEEeC-CCcEEEEEcCeEEEeecCCcccccccc
Q 009785 174 SLPNVRLEQGT-VTSLLEEK---GTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLC 230 (526)
Q Consensus 174 ~~~~v~i~~~~-v~~l~~~~---~~v~gv~v~~~-~G~~~~i~a~~vV~ADG~~S~vR~~l~ 230 (526)
+.++++++.+. |++++.++ ++|.+|++.+. +|+..+++|+.||.|.|+--..|-.+.
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 46789999885 89988653 36888988875 688888999999999998777666554
No 204
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.37 E-value=4.9e-06 Score=86.38 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=50.9
Q ss_pred cccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 154 VAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 154 ~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
|....++...+.+.|...|++. |+.+.++. |+++.-..++..+|+ +.-|. |++..+|.|+|.+..
T Consensus 179 P~DG~~DP~~lC~ala~~A~~~-GA~viE~cpV~~i~~~~~~~~gVe--T~~G~---iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 179 PGDGVMDPAGLCQALARAASAL-GALVIENCPVTGLHVETDKFGGVE--TPHGS---IETECVVNAAGVWAR 244 (856)
T ss_pred CCCcccCHHHHHHHHHHHHHhc-CcEEEecCCcceEEeecCCcccee--ccCcc---eecceEEechhHHHH
Confidence 3444677888999999999999 67777775 999987666655555 56675 779999999999973
No 205
>PLN02546 glutathione reductase
Probab=98.35 E-value=1.5e-06 Score=92.98 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEec
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIER 91 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er 91 (526)
.+|||+||||||+|..+|..++++|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 369999999999999999999999999999997
No 206
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.34 E-value=1.2e-05 Score=62.69 Aligned_cols=77 Identities=26% Similarity=0.357 Sum_probs=58.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCeee
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT 141 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 141 (526)
.|+|||||+.|+-+|..|++.|.+|+|+|+++.....
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------------------------------- 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------------------------------- 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------------------------------
Confidence 4899999999999999999999999999999642100
Q ss_pred eecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEE
Q 009785 142 QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYK 201 (526)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~ 201 (526)
....+...+.+.+++. ++++++++ ++++..+++++. |+++
T Consensus 38 ------------------~~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~~~-V~~~ 78 (80)
T PF00070_consen 38 ------------------FDPDAAKILEEYLRKR-GVEVHTNTKVKEIEKDGDGVE-VTLE 78 (80)
T ss_dssp ------------------SSHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTSEE-EEEE
T ss_pred ------------------cCHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCEEE-EEEe
Confidence 0113455666666666 89999996 999998877644 5543
No 207
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.33 E-value=5.5e-06 Score=87.60 Aligned_cols=33 Identities=36% Similarity=0.539 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
+|||+||||||+|+.+|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999985
No 208
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.32 E-value=8.8e-06 Score=93.23 Aligned_cols=36 Identities=42% Similarity=0.569 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
..+||+|||||||||++|+.|++.|++|+|+|+.+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 468999999999999999999999999999999854
No 209
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.32 E-value=5.7e-06 Score=87.87 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
.|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 599999999999999999999999999999974
No 210
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=1e-05 Score=85.32 Aligned_cols=34 Identities=47% Similarity=0.610 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
.+|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3599999999999999999999999999999984
No 211
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.26 E-value=4.9e-06 Score=87.66 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+|+||||||+|+++|..|++.|.+|+|+||+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999974
No 212
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.26 E-value=1.6e-05 Score=80.97 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCC-cc
Q 009785 163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF-SN 224 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~-S~ 224 (526)
++.+.|.+.+++. |+++..+ +|+++..+++++.+|.. .++...+++||.+|.|+|.+ |.
T Consensus 264 RL~~aL~~~~~~~-Gg~il~g~~V~~i~~~~~~v~~V~t--~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 264 RLEEALKHRFEQL-GGVMLPGDRVLRAEFEGNRVTRIHT--RNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHC-CCEEEECcEEEEEEeeCCeEEEEEe--cCCccceEECCEEEEccCCCcCH
Confidence 6777888888888 5677777 69999888787765543 33322357899999999999 74
No 213
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.24 E-value=4.6e-06 Score=88.04 Aligned_cols=33 Identities=33% Similarity=0.460 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKD-GRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~-G~~V~l~Er~ 92 (526)
+|||+||||||+|..+|..+++. |.+|+|+|++
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 69999999999999999999996 9999999985
No 214
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.22 E-value=7.5e-06 Score=84.78 Aligned_cols=36 Identities=36% Similarity=0.448 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+.+||++||||||+|..+|..+++.|.+|.++|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 347999999999999999999999999999999995
No 215
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.22 E-value=9.7e-06 Score=85.58 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
|||+||||||+|+++|..|+++|.+|+|+||..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999874
No 216
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.22 E-value=9.3e-05 Score=72.39 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccccccccCCC
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNLRRSLCNPK 233 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~vR~~l~~~~ 233 (526)
++.....+.+..+ ++.+..++ |+....+.++.+.+++.+ ++|+.++++||.+..|.|.+ ++-+-|+...
T Consensus 253 Eisk~~qr~L~kQ-gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr-P~t~GLgle~ 323 (506)
T KOG1335|consen 253 EISKAFQRVLQKQ-GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR-PFTEGLGLEK 323 (506)
T ss_pred HHHHHHHHHHHhc-CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc-ccccCCChhh
Confidence 3444444555555 78888885 999887766444467766 57777889999999999965 4445555543
No 217
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.21 E-value=1.6e-06 Score=91.65 Aligned_cols=54 Identities=26% Similarity=0.296 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecC
Q 009785 163 RFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGC 221 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~ 221 (526)
.+.+.|.+.+++. |++|+.+ +|+++..++++ ++++.+.+| ..+++|.||.+-..
T Consensus 225 al~~aL~~~~~~~-Gg~I~~~~~V~~I~v~~g~--g~~~~~~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 225 ALVDALAELAREH-GGEIRTGAEVSQILVEGGK--GVGVRTSDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHc-CCEEECCCceEEEEEeCCc--ceEEecccc--ceeccceeEecCch
Confidence 5778899988888 7888888 59999988876 566667777 35679998887766
No 218
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.20 E-value=5.7e-06 Score=73.52 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=26.9
Q ss_pred EEECCCHHHHHHHHHHHhC-----CCeEEEEecCC
Q 009785 64 IVVGAGVAGAALANTLAKD-----GRRVHVIERDL 93 (526)
Q Consensus 64 vIVGaG~aGl~~A~~La~~-----G~~V~l~Er~~ 93 (526)
+|||||++|++++..|.++ ..+|+|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5999999999999999887 47899999964
No 219
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.19 E-value=1e-05 Score=84.93 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G--~~V~l~Er~~~ 94 (526)
+|+|||||++|+++|..|++.| .+|+|+|+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 6999999999999999999975 58999999853
No 220
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.18 E-value=0.00011 Score=69.62 Aligned_cols=215 Identities=19% Similarity=0.203 Sum_probs=107.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-------CeEEEEecCCCCCCcc--cceeeCcc-----hHHHHHHcCCc-----ch
Q 009785 60 DADVIVVGAGVAGAALANTLAKDG-------RRVHVIERDLSEPDRI--VGELLQPG-----GYLKLIELGLE-----DC 120 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G-------~~V~l~Er~~~~~~~~--~g~~l~~~-----~~~~l~~lGl~-----~~ 120 (526)
..+|+|||+|+.||++|+.+.+.+ .+|++++-++.+...+ .+....|. +.+.-++++-. ..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~~ 82 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLAH 82 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCcHHHHHHHHHHHHHHHHH
Confidence 478999999999999998888854 5799998876544322 22223333 23333333211 11
Q ss_pred h------hcccceeeeeeEEEECCeeee--------ecCCCc--------CCC------CCcccceeechHHHHHHHHHH
Q 009785 121 V------EQIDAQRVFGYALFKDGNRTQ--------ISYPLE--------KFH------SDVAGRGFHNGRFVQRLREKA 172 (526)
Q Consensus 121 l------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--------~~~------~~~~~~~~~~~~l~~~L~~~a 172 (526)
+ .+.+.....++..+.. +... +-+.+. .++ .....+...-..+...|.+.+
T Consensus 83 l~rs~~a~~aGV~l~sg~~ls~~-e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l 161 (342)
T KOG3923|consen 83 LARSEEAGEAGVCLVSGHILSDS-ESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRL 161 (342)
T ss_pred HhccccccccceEEeeeeeeccC-CCchhhhhhHHhhhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHHH
Confidence 1 1112223344444432 1100 000000 010 111122344567889999999
Q ss_pred HcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccccccccCCCCCCccceeEEEEeccCCCC
Q 009785 173 ASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPF 252 (526)
Q Consensus 173 ~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (526)
.+. ++++...+|.++++-.. -.+|+||.|+|-.+. +..+.+. ....+|.++. .+-|
T Consensus 162 ~e~-Gvef~~r~v~~l~E~~~----------------~~~DVivNCtGL~a~--~L~gDd~---~yPiRGqVl~-V~Ap- 217 (342)
T KOG3923|consen 162 TEN-GVEFVQRRVESLEEVAR----------------PEYDVIVNCTGLGAG--KLAGDDD---LYPIRGQVLK-VDAP- 217 (342)
T ss_pred Hhc-CcEEEEeeeccHHHhcc----------------CCCcEEEECCccccc--cccCCcc---eeeccceEEE-eeCC-
Confidence 988 67777666766643211 128999999999884 2333222 2334555553 2222
Q ss_pred CCccEEEecCCCcEEEEecCCCcEEEEEEeC--CCCCCCCCchHHHHHHHHh
Q 009785 253 ENHGHVVLADPSPILFYPISSNEVRCLVDIP--GQKVPSISNGEMANYLKTV 302 (526)
Q Consensus 253 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 302 (526)
-.-+++..+....+++|..+. ..+-.+. ++-......++..+.+.+.
T Consensus 218 -Wvkhf~~~D~~~ty~iP~~~~--V~lGg~~Q~g~w~~ei~~~D~~dIl~rc 266 (342)
T KOG3923|consen 218 -WVKHFIYRDFSRTYIIPGTES--VTLGGTKQEGNWNLEITDEDRRDILERC 266 (342)
T ss_pred -ceeEEEEecCCccEEecCCce--EEEccccccCcccCcCChhhHHHHHHHH
Confidence 234455544443344454433 2222222 2212234455555555554
No 221
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.17 E-value=2.5e-05 Score=74.89 Aligned_cols=37 Identities=46% Similarity=0.737 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
.++||||||||.+||.+|..|+..|.+|+|+|+..+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 3689999999999999999999999999999998643
No 222
>PRK02106 choline dehydrogenase; Validated
Probab=98.16 E-value=3e-05 Score=83.78 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=45.4
Q ss_pred HHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccc
Q 009785 167 RLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 167 ~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
..+..+.+.+++++..++ |+++..++++++||++.+.++....+.++-||.|.|+...-
T Consensus 205 ~~l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP 264 (560)
T PRK02106 205 AYLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSP 264 (560)
T ss_pred HhhccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCH
Confidence 334445556789999885 99999888889999998776655567899999999986543
No 223
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.15 E-value=1.4e-05 Score=83.70 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKD--GRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~--G~~V~l~Er~~~ 94 (526)
+|+|||||++|+.+|..|++. +.+|+|+|+++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 799999999999999999887 579999999864
No 224
>PRK09897 hypothetical protein; Provisional
Probab=98.15 E-value=1.4e-05 Score=84.72 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G--~~V~l~Er~~~ 94 (526)
.+|+||||||+|+++|..|.+++ ++|+|+|++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 47999999999999999998865 58999999754
No 225
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.08 E-value=4.4e-05 Score=82.05 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecC-Ccc
Q 009785 165 VQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGC-FSN 224 (526)
Q Consensus 165 ~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~-~S~ 224 (526)
...+...+.+.++++++.++ |+++..++++++||++...++....+.++.||.|.|+ +|+
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP 257 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSP 257 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCH
Confidence 34444556656789999885 9999988888999998765443334579999999998 443
No 226
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.07 E-value=3.8e-05 Score=83.50 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
+|||+||||||+|.++|+.+++.|.+|+|+|++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999975
No 227
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.06 E-value=1.8e-05 Score=89.57 Aligned_cols=34 Identities=35% Similarity=0.375 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
..+|+|||||||||++|..|++.|++|+|+|+.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 4689999999999999999999999999999985
No 228
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.05 E-value=0.00014 Score=76.91 Aligned_cols=36 Identities=44% Similarity=0.584 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 469999999999999999999999999999998654
No 229
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.04 E-value=2.6e-05 Score=78.35 Aligned_cols=152 Identities=22% Similarity=0.177 Sum_probs=74.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEecCCCCCCcccceeeCcchHH--HHHHcCCcchhhcccceeeeeeEEE-
Q 009785 60 DADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGYL--KLIELGLEDCVEQIDAQRVFGYALF- 135 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G-~~V~l~Er~~~~~~~~~g~~l~~~~~~--~l~~lGl~~~l~~~~~~~~~~~~~~- 135 (526)
.+|+|+||.||++|++|+.|...+ .+++.+||.+....++ |..+....++ .|+ |.+.- ..+...+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~-gmll~~~~~q~~fl~-----Dlvt~--~~P~s~~sfln 73 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP-GMLLPGARMQVSFLK-----DLVTL--RDPTSPFSFLN 73 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG-GG--SS-B-SS-TTS-----SSSTT--T-TTSTTSHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC-ccCCCCCcccccccc-----ccCcC--cCCCCcccHHH
Confidence 489999999999999999999887 9999999987654433 2222111110 011 10000 0000011000
Q ss_pred ---ECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCC---eEEEEEEEeCCCcEE
Q 009785 136 ---KDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKG---TIKGVQYKTKAGEEL 208 (526)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~---~v~gv~v~~~~G~~~ 208 (526)
..+... .+- ........|.++.+.|.-.+.+.+.. +.++ +|+++..+++ ....|+..+.+|+..
T Consensus 74 YL~~~~rl~--~f~------~~~~~~p~R~ef~dYl~Wva~~~~~~-v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~ 144 (341)
T PF13434_consen 74 YLHEHGRLY--EFY------NRGYFFPSRREFNDYLRWVAEQLDNQ-VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGE 144 (341)
T ss_dssp HHHHTT-HH--HHH------HH--SS-BHHHHHHHHHHHHCCGTTT-EEESEEEEEEEEEEETTEEEEEEEEEETTS-EE
T ss_pred HHHHcCChh--hhh------hcCCCCCCHHHHHHHHHHHHHhCCCc-eEECCEEEEEEEecCCCccEEEEEEeecCCCee
Confidence 000000 000 00011246788889998888777542 5555 5999885432 233455555778777
Q ss_pred EEEcCeEEEeecCCcccccc
Q 009785 209 TAYAPLTIVCDGCFSNLRRS 228 (526)
Q Consensus 209 ~i~a~~vV~ADG~~S~vR~~ 228 (526)
++.|+-||.+.|..-.+-+.
T Consensus 145 ~~~ar~vVla~G~~P~iP~~ 164 (341)
T PF13434_consen 145 TYRARNVVLATGGQPRIPEW 164 (341)
T ss_dssp EEEESEEEE----EE---GG
T ss_pred EEEeCeEEECcCCCCCCCcc
Confidence 89999999999954334333
No 230
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.02 E-value=0.00011 Score=77.53 Aligned_cols=36 Identities=36% Similarity=0.499 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
..+|+||||||+|+++|..|+++|++|+|+|+.+..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 468999999999999999999999999999998653
No 231
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.01 E-value=3.3e-05 Score=80.46 Aligned_cols=111 Identities=22% Similarity=0.201 Sum_probs=69.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCe
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 139 (526)
+.+|||||||.+|+.+|..|.+.+++|+|+|+++...- +|. +-... .+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~-------~~~----l~~~~--------------------~g- 57 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLF-------TPL----LPQTT--------------------TG- 57 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcch-------hhh----HHHhc--------------------cc-
Confidence 46899999999999999999887899999998753111 110 00000 00
Q ss_pred eeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEE--Ee----CCCcEEEEEcC
Q 009785 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQY--KT----KAGEELTAYAP 213 (526)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v--~~----~~G~~~~i~a~ 213 (526)
......+...+++.+... ++++..++|+++..++..+. +.. .+ .+|. ++.+|
T Consensus 58 ------------------~~~~~~~~~~~~~~~~~~-~~~~i~~~V~~Id~~~~~v~-~~~~~~~~~~~~~g~--~i~yD 115 (424)
T PTZ00318 58 ------------------TLEFRSICEPVRPALAKL-PNRYLRAVVYDVDFEEKRVK-CGVVSKSNNANVNTF--SVPYD 115 (424)
T ss_pred ------------------CCChHHhHHHHHHHhccC-CeEEEEEEEEEEEcCCCEEE-EecccccccccCCce--EecCC
Confidence 001112223344444444 68888889999987766433 211 11 2333 57899
Q ss_pred eEEEeecCCcc
Q 009785 214 LTIVCDGCFSN 224 (526)
Q Consensus 214 ~vV~ADG~~S~ 224 (526)
++|.|+|....
T Consensus 116 ~LViAtGs~~~ 126 (424)
T PTZ00318 116 KLVVAHGARPN 126 (424)
T ss_pred EEEECCCcccC
Confidence 99999998754
No 232
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.01 E-value=0.00019 Score=75.92 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=73.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+..-+.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------------------------------ 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------------------------------ 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------------------------------
Confidence 47999999999999999999999999999987421000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+...+.+.+++. +++++.++ |+++..+++.+ .+.+...+|+..++.+|.||.|.
T Consensus 211 -------------------~d~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vi~a~ 269 (466)
T PRK07818 211 -------------------EDAEVSKEIAKQYKKL-GVKILTGTKVESIDDNGSKV-TVTVSKKDGKAQELEADKVLQAI 269 (466)
T ss_pred -------------------cCHHHHHHHHHHHHHC-CCEEEECCEEEEEEEeCCeE-EEEEEecCCCeEEEEeCEEEECc
Confidence 0012344555666666 89999885 88887655433 24444346765578899999999
Q ss_pred cCCcccc
Q 009785 220 GCFSNLR 226 (526)
Q Consensus 220 G~~S~vR 226 (526)
|......
T Consensus 270 G~~pn~~ 276 (466)
T PRK07818 270 GFAPRVE 276 (466)
T ss_pred CcccCCC
Confidence 9876653
No 233
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=7.9e-06 Score=78.60 Aligned_cols=115 Identities=24% Similarity=0.302 Sum_probs=75.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEE
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFK 136 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 136 (526)
.+..|||+||||||+|.++|++.+|.|++.-|+-.+ ..|. .|+.++++..+
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer------fGGQ--------vldT~~IENfI--------------- 258 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER------FGGQ--------VLDTMGIENFI--------------- 258 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh------hCCe--------eccccchhhee---------------
Confidence 345699999999999999999999999987554322 1111 22233332111
Q ss_pred CCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEee--CCeEEEEEEEeCCCcEEEEEcC
Q 009785 137 DGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEE--KGTIKGVQYKTKAGEELTAYAP 213 (526)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~--~~~v~gv~v~~~~G~~~~i~a~ 213 (526)
..+. ..-.+|...|.++.++. .+++... +.++++.. .+. -.+++.++|.. ..++
T Consensus 259 -------sv~~-----------teGpkl~~ale~Hv~~Y-~vDimn~qra~~l~~a~~~~~--l~ev~l~nGav--Lkak 315 (520)
T COG3634 259 -------SVPE-----------TEGPKLAAALEAHVKQY-DVDVMNLQRASKLEPAAVEGG--LIEVELANGAV--LKAR 315 (520)
T ss_pred -------cccc-----------ccchHHHHHHHHHHhhc-CchhhhhhhhhcceecCCCCc--cEEEEecCCce--eccc
Confidence 1110 12236888899999888 6777766 47777653 222 25566778874 5699
Q ss_pred eEEEeecCCc
Q 009785 214 LTIVCDGCFS 223 (526)
Q Consensus 214 ~vV~ADG~~S 223 (526)
-+|.++|++-
T Consensus 316 tvIlstGArW 325 (520)
T COG3634 316 TVILATGARW 325 (520)
T ss_pred eEEEecCcch
Confidence 9999999864
No 234
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=2e-05 Score=78.85 Aligned_cols=152 Identities=24% Similarity=0.362 Sum_probs=86.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC-CcccceeeCcch----HHHHHHc-CCcchhhcccceeeee
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP-DRIVGELLQPGG----YLKLIEL-GLEDCVEQIDAQRVFG 131 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~-~~~~g~~l~~~~----~~~l~~l-Gl~~~l~~~~~~~~~~ 131 (526)
...|||||||||-||+-+|.+.+|.|.+.+|+-.+-..- .-+|.-.+..-| ++..+.+ |+-..+-+. .
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~-----s- 99 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQ-----S- 99 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhh-----h-
Confidence 457999999999999999999999999999998874321 111110000000 0001111 110000000 0
Q ss_pred eEEEECCeeeeecCCCcCCCCCcc--c--ceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeC-C--e--EEEEEEEe
Q 009785 132 YALFKDGNRTQISYPLEKFHSDVA--G--RGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEK-G--T--IKGVQYKT 202 (526)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~-~--~--v~gv~v~~ 202 (526)
.+.|..-+...++. | ..++|..+...+.+.+...++.+++++.|.++.-.+ + . +.||. .
T Consensus 100 ----------~vq~k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~--l 167 (679)
T KOG2311|consen 100 ----------GVQYKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVV--L 167 (679)
T ss_pred ----------hhhHHHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEE--E
Confidence 01111111111111 1 245666777777777888889999999988876332 2 1 45554 4
Q ss_pred CCCcEEEEEcCeEEEeecCCccccccccC
Q 009785 203 KAGEELTAYAPLTIVCDGCFSNLRRSLCN 231 (526)
Q Consensus 203 ~~G~~~~i~a~~vV~ADG~~S~vR~~l~~ 231 (526)
.||+ .++|+-||..+|.+ +|.++.+
T Consensus 168 ~dgt--~v~a~~VilTTGTF--L~~~I~i 192 (679)
T KOG2311|consen 168 VDGT--VVYAESVILTTGTF--LRGQINI 192 (679)
T ss_pred ecCc--EeccceEEEeeccc--eeeEEee
Confidence 5676 47899999999975 5555543
No 235
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.96 E-value=1.9e-05 Score=81.03 Aligned_cols=61 Identities=30% Similarity=0.360 Sum_probs=47.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCcccc------------e--eeC-cchHHHHHHcCCcchhh
Q 009785 62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIVG------------E--LLQ-PGGYLKLIELGLEDCVE 122 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G--~~V~l~Er~~~~~~~~~g------------~--~l~-~~~~~~l~~lGl~~~l~ 122 (526)
.|+|||||++||++|+.|++++ ++++|+|+++........ . ... +..++.++++|+++.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 5899999999999999999999 999999998765432211 1 111 44567788999998876
No 236
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=1e-05 Score=84.95 Aligned_cols=41 Identities=39% Similarity=0.435 Sum_probs=36.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI 99 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~ 99 (526)
+..+|||||||++||+||..|.+.|++|+|+|.+.....|.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI 54 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence 35799999999999999999999999999999998766543
No 237
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.95 E-value=0.00015 Score=75.30 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=73.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-.++|||||+.|+-.|..+++.|.+|+|+|+.+..-+.
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~------------------------------------------ 211 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG------------------------------------------ 211 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc------------------------------------------
Confidence 35999999999999999999999999999999531100
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
...++.+.+.+.+++ .++.++.++ ++.++..+++ +.+..++|+..++++|.++.|.
T Consensus 212 -------------------~D~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~---v~v~~~~g~~~~~~ad~vLvAi 268 (454)
T COG1249 212 -------------------EDPEISKELTKQLEK-GGVKILLNTKVTAVEKKDDG---VLVTLEDGEGGTIEADAVLVAI 268 (454)
T ss_pred -------------------CCHHHHHHHHHHHHh-CCeEEEccceEEEEEecCCe---EEEEEecCCCCEEEeeEEEEcc
Confidence 112456677777777 589998886 7777776664 3344444543357799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|..-++
T Consensus 269 GR~Pn~ 274 (454)
T COG1249 269 GRKPNT 274 (454)
T ss_pred CCccCC
Confidence 976554
No 238
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.94 E-value=0.00035 Score=73.81 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=71.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||++|+-+|..|++.|.+|+++|+.+...+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------------------------------ 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------------------------------
Confidence 47999999999999999999999999999997531000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. ++.++.+ +|+++..+++.+. +...+ +|+..++.+|.||.|.
T Consensus 211 -------------------~~~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~v~-v~~~~-gg~~~~i~~D~vi~a~ 268 (462)
T PRK06416 211 -------------------EDKEISKLAERALKKR-GIKIKTGAKAKKVEQTDDGVT-VTLED-GGKEETLEADYVLVAV 268 (462)
T ss_pred -------------------CCHHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCEEE-EEEEe-CCeeEEEEeCEEEEee
Confidence 0012334555556565 7999988 4999887665432 33222 2444568899999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 269 G~~p~~ 274 (462)
T PRK06416 269 GRRPNT 274 (462)
T ss_pred CCccCC
Confidence 987654
No 239
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.94 E-value=3.9e-05 Score=78.36 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=65.6
Q ss_pred cEEEECCCHHHHHHHHHHHhC---CCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECC
Q 009785 62 DVIVVGAGVAGAALANTLAKD---GRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDG 138 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~---G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 138 (526)
+|||||||++|+.+|..|.++ +.+|+|+|++....- .+.....+ .+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~-------~~~~~~~~------------------------~g 49 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPY-------SGMLPGMI------------------------AG 49 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcc-------cchhhHHH------------------------he
Confidence 489999999999999999644 689999998853111 11000000 00
Q ss_pred eeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEe
Q 009785 139 NRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (526)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~A 218 (526)
. ....++...+.+.+.+. ++++..++|+++..++.. |. ..+|+ ++.+|+||.|
T Consensus 50 ~-------------------~~~~~~~~~~~~~~~~~-gv~~~~~~v~~id~~~~~---V~--~~~g~--~~~yD~LviA 102 (364)
T TIGR03169 50 H-------------------YSLDEIRIDLRRLARQA-GARFVIAEATGIDPDRRK---VL--LANRP--PLSYDVLSLD 102 (364)
T ss_pred e-------------------CCHHHhcccHHHHHHhc-CCEEEEEEEEEEecccCE---EE--ECCCC--cccccEEEEc
Confidence 0 00011222233334444 788888889998776553 22 45565 3679999999
Q ss_pred ecCCccc
Q 009785 219 DGCFSNL 225 (526)
Q Consensus 219 DG~~S~v 225 (526)
+|+....
T Consensus 103 tG~~~~~ 109 (364)
T TIGR03169 103 VGSTTPL 109 (364)
T ss_pred cCCCCCC
Confidence 9987643
No 240
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.90 E-value=0.0002 Score=75.83 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-.|+|||||..|+-+|..|++.|.+|+|+|+.+.....
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------------------------------ 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------------------------------
Confidence 47999999999999999999999999999987421000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+...+.+.+.+. ++.++.+ +|+++..+++.+. +.+.+.+|++.++.+|.||.|.
T Consensus 222 -------------------~d~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~i~~D~vl~a~ 280 (475)
T PRK06327 222 -------------------ADEQVAKEAAKAFTKQ-GLDIHLGVKIGEIKTGGKGVS-VAYTDADGEAQTLEVDKLIVSI 280 (475)
T ss_pred -------------------CCHHHHHHHHHHHHHc-CcEEEeCcEEEEEEEcCCEEE-EEEEeCCCceeEEEcCEEEEcc
Confidence 0012344455555555 7999888 4999887665442 5544545665678899999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 281 G~~p~~ 286 (475)
T PRK06327 281 GRVPNT 286 (475)
T ss_pred CCccCC
Confidence 987664
No 241
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.90 E-value=2.3e-05 Score=74.60 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=34.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCC
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSE 95 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~--G~~V~l~Er~~~~ 95 (526)
..++||.+|||||++|++.|..|.-+ +.+|.|+|+..+.
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 34579999999999999999998776 9999999998654
No 242
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.89 E-value=0.00016 Score=74.18 Aligned_cols=98 Identities=21% Similarity=0.319 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+....+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS------------------------------------------ 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch------------------------------------------
Confidence 47999999999999999999999999999987531000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
. ....+...+.+.+++. +++++.+ +++++..+++. +.+...+|+ ++.+|+||.|+
T Consensus 180 ---~---------------~~~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~vI~a~ 235 (377)
T PRK04965 180 ---L---------------MPPEVSSRLQHRLTEM-GVHLLLKSQLQGLEKTDSG---IRATLDSGR--SIEVDAVIAAA 235 (377)
T ss_pred ---h---------------CCHHHHHHHHHHHHhC-CCEEEECCeEEEEEccCCE---EEEEEcCCc--EEECCEEEECc
Confidence 0 0012334455556555 7888877 48888766553 334456675 47799999999
Q ss_pred cCCcc
Q 009785 220 GCFSN 224 (526)
Q Consensus 220 G~~S~ 224 (526)
|..+.
T Consensus 236 G~~p~ 240 (377)
T PRK04965 236 GLRPN 240 (377)
T ss_pred CCCcc
Confidence 98764
No 243
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.89 E-value=1.4e-05 Score=85.07 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcccccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLC 230 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~l~ 230 (526)
.+.+.|.+.+++. +++++.++ |+++..+++++.+|+ ..+|+ ++.||.||.|.|.+..+++.+.
T Consensus 230 ~l~~~L~~~~~~~-G~~i~~~~~V~~I~~~~~~~~gv~--~~~g~--~~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 230 QIAESLVKGLEKH-GGQIRYRARVTKIILENGKAVGVK--LADGE--KIYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHC-CCEEEeCCeeeEEEecCCcEEEEE--eCCCC--EEEcCEEEECCChHHHHHHhCC
Confidence 5777888888887 67888884 999987777776665 44565 3669999999999888877664
No 244
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.88 E-value=0.00021 Score=75.26 Aligned_cols=99 Identities=22% Similarity=0.348 Sum_probs=71.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+... + .
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll---------~----------------~----------------- 208 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------P----------------G----------------- 208 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------c----------------c-----------------
Confidence 479999999999999999999999999999874210 0 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
...++.+.+.+.+++. +++++.++ ++++..++.. +.+.. +|+..++.+|.||.|.
T Consensus 209 -------------------~d~e~~~~l~~~L~~~-GI~i~~~~~V~~i~~~~~~---v~~~~-~g~~~~i~~D~vivA~ 264 (458)
T PRK06912 209 -------------------EDEDIAHILREKLEND-GVKIFTGAALKGLNSYKKQ---ALFEY-EGSIQEVNAEFVLVSV 264 (458)
T ss_pred -------------------ccHHHHHHHHHHHHHC-CCEEEECCEEEEEEEcCCE---EEEEE-CCceEEEEeCEEEEec
Confidence 0012445555666665 79999885 8888765442 33433 3544568899999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|....+
T Consensus 265 G~~p~~ 270 (458)
T PRK06912 265 GRKPRV 270 (458)
T ss_pred CCccCC
Confidence 987765
No 245
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.88 E-value=0.00035 Score=73.75 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=72.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------~----------------- 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS-------------------------F----------------- 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------------c-----------------
Confidence 4799999999999999999999999999998742100 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
...++.+.|.+.+++. +++++.+ +++++..+++. +.+...+|+ ++.+|.||.|.
T Consensus 214 -------------------~d~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~vi~a~ 268 (461)
T PRK05249 214 -------------------LDDEISDALSYHLRDS-GVTIRHNEEVEKVEGGDDG---VIVHLKSGK--KIKADCLLYAN 268 (461)
T ss_pred -------------------CCHHHHHHHHHHHHHc-CCEEEECCEEEEEEEeCCe---EEEEECCCC--EEEeCEEEEee
Confidence 0012445556666665 7898887 48888765553 334455665 47799999999
Q ss_pred cCCcccc
Q 009785 220 GCFSNLR 226 (526)
Q Consensus 220 G~~S~vR 226 (526)
|......
T Consensus 269 G~~p~~~ 275 (461)
T PRK05249 269 GRTGNTD 275 (461)
T ss_pred cCCcccc
Confidence 9887654
No 246
>PLN02576 protoporphyrinogen oxidase
Probab=97.87 E-value=2e-05 Score=84.00 Aligned_cols=40 Identities=43% Similarity=0.429 Sum_probs=35.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCCc
Q 009785 59 FDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSEPDR 98 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~-G~~V~l~Er~~~~~~~ 98 (526)
.++||+|||||++||++|+.|+++ |++|+|+|++.....+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 357999999999999999999999 9999999999776554
No 247
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.86 E-value=1.7e-05 Score=84.52 Aligned_cols=36 Identities=42% Similarity=0.646 Sum_probs=33.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~ 96 (526)
.||+|||||++||++|..|++.|++|+|+||+..+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999997654
No 248
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.85 E-value=0.00027 Score=76.44 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
.-+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 458999999999999999999999999999998654
No 249
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.85 E-value=0.00024 Score=75.17 Aligned_cols=101 Identities=27% Similarity=0.302 Sum_probs=71.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+...+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------ 218 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT------------------------------------------ 218 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc------------------------------------------
Confidence 47999999999999999999999999999998531000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEeCCCcEEEEEcCeEEEe
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLE-EKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~-~~~~v~gv~v~~~~G~~~~i~a~~vV~A 218 (526)
....+.+.+.+.+++. +++++.++ ++++.. .++++.. +...+|+..++.+|.||.|
T Consensus 219 -------------------~~~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~~~~~--~~~~~g~~~~i~~D~vi~a 276 (472)
T PRK05976 219 -------------------EDAELSKEVARLLKKL-GVRVVTGAKVLGLTLKKDGGVLI--VAEHNGEEKTLEADKVLVS 276 (472)
T ss_pred -------------------CCHHHHHHHHHHHHhc-CCEEEeCcEEEEEEEecCCCEEE--EEEeCCceEEEEeCEEEEe
Confidence 0012344555556565 79998885 888874 2343322 2334566567889999999
Q ss_pred ecCCccc
Q 009785 219 DGCFSNL 225 (526)
Q Consensus 219 DG~~S~v 225 (526)
.|.....
T Consensus 277 ~G~~p~~ 283 (472)
T PRK05976 277 VGRRPNT 283 (472)
T ss_pred eCCccCC
Confidence 9987654
No 250
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=4.4e-05 Score=73.15 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC-----cccceeeCcchHH---HHHHcCCc-chhhcccceeee
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD-----RIVGELLQPGGYL---KLIELGLE-DCVEQIDAQRVF 130 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~-----~~~g~~l~~~~~~---~l~~lGl~-~~l~~~~~~~~~ 130 (526)
...|-|||||.||.-+|+.++++|++|.|+|.++.... ....+.+..++++ .-...|+. ++++..+..-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSli-- 80 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLI-- 80 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHHHHhhhHH--
Confidence 35799999999999999999999999999998864221 1123334333322 11223333 2222221110
Q ss_pred eeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEe
Q 009785 131 GYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLE 190 (526)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~ 190 (526)
...... ... +.-....++|..|-+.+-+.+.++|.|++..++|+++-.
T Consensus 81 ----i~~Ad~--~~V------PAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~ 128 (439)
T COG1206 81 ----IEAADK--HRV------PAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP 128 (439)
T ss_pred ----hhhhhh--ccC------CCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccCCC
Confidence 000000 000 111235789999999999999999999999988888754
No 251
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.84 E-value=0.00057 Score=72.20 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=70.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.....
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------------------------------ 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------------------------------
Confidence 47999999999999999999999999999987421000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+...+.+.+.+. +++++.++ |+++..+++.+ .+++...++ ..++.+|.||.|.
T Consensus 205 -------------------~d~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~~-~v~~~~~~~-~~~i~~D~ViiA~ 262 (463)
T TIGR02053 205 -------------------EEPEISAAVEEALAEE-GIEVVTSAQVKAVSVRGGGK-IITVEKPGG-QGEVEADELLVAT 262 (463)
T ss_pred -------------------cCHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCEE-EEEEEeCCC-ceEEEeCEEEEeE
Confidence 0012334455555555 79999885 88887655432 244433323 2468899999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 263 G~~p~~ 268 (463)
T TIGR02053 263 GRRPNT 268 (463)
T ss_pred CCCcCC
Confidence 987654
No 252
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=1.9e-05 Score=80.98 Aligned_cols=38 Identities=34% Similarity=0.423 Sum_probs=34.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI 99 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~ 99 (526)
.|+|+|||+|||++|+.|+.+|++|+|+|+++....+.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 69999999999999999999999999999998765543
No 253
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.82 E-value=2.1e-05 Score=82.67 Aligned_cols=59 Identities=29% Similarity=0.427 Sum_probs=44.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCcccc-----eee----------CcchHHHHHHcCCcch
Q 009785 62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIVG-----ELL----------QPGGYLKLIELGLEDC 120 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G--~~V~l~Er~~~~~~~~~g-----~~l----------~~~~~~~l~~lGl~~~ 120 (526)
+|+|||||++||++|+.|+++| ++|+|+|++.....+... ..+ .+.....++++|+.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 77 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDE 77 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccc
Confidence 6999999999999999999988 899999998766543322 111 1234577888888643
No 254
>PRK07846 mycothione reductase; Reviewed
Probab=97.81 E-value=5.3e-05 Score=79.57 Aligned_cols=31 Identities=23% Similarity=0.561 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
+|||+||||||+|.++|.. ..|.+|+|+|++
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~ 31 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG 31 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence 3899999999999998876 469999999986
No 255
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.00036 Score=73.63 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=72.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-------------------------~----------------- 212 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-------------------------G----------------- 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-------------------------C-----------------
Confidence 4799999999999999999999999999998742100 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEe
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC 218 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~A 218 (526)
....+...+.+.+.+. +++++.++ ++++..+++.+ .+++.+ .+|+..++.+|.||.|
T Consensus 213 -------------------~d~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a 271 (466)
T PRK06115 213 -------------------TDTETAKTLQKALTKQ-GMKFKLGSKVTGATAGADGV-SLTLEPAAGGAAETLQADYVLVA 271 (466)
T ss_pred -------------------CCHHHHHHHHHHHHhc-CCEEEECcEEEEEEEcCCeE-EEEEEEcCCCceeEEEeCEEEEc
Confidence 0012334555566655 79999884 88987655543 244443 2354456889999999
Q ss_pred ecCCccc
Q 009785 219 DGCFSNL 225 (526)
Q Consensus 219 DG~~S~v 225 (526)
.|.....
T Consensus 272 ~G~~pn~ 278 (466)
T PRK06115 272 IGRRPYT 278 (466)
T ss_pred cCCcccc
Confidence 9987654
No 256
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.81 E-value=8.8e-05 Score=76.63 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC--eEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~--~V~l~Er~~~ 94 (526)
.+|+|||||++|+++|..|+++|. +|+|+++.+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 579999999999999999999986 7999998854
No 257
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.79 E-value=0.00013 Score=73.88 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G--~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
...|||||||-+|+.+|..|.++- .+|+|+||+....-. |- +.+.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~-------pl-------------L~ev------------- 49 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT-------PL-------------LYEV------------- 49 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc-------hh-------------hhhh-------------
Confidence 357999999999999999999974 899999999642111 10 0000
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEE
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIV 217 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ 217 (526)
....++......-+++.+.+..++.+..++|+++..+..+| ++ +++. .+..|++|.
T Consensus 50 -----------------a~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V---~~--~~~~--~i~YD~LVv 105 (405)
T COG1252 50 -----------------ATGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKV---TL--ADLG--EISYDYLVV 105 (405)
T ss_pred -----------------hcCCCChhheeccHHHHhcccCceEEEEEEEEEEcccCCEE---Ee--CCCc--cccccEEEE
Confidence 00011222233344445554557999999999999887753 33 3332 477999999
Q ss_pred eecCCcc
Q 009785 218 CDGCFSN 224 (526)
Q Consensus 218 ADG~~S~ 224 (526)
|.|+...
T Consensus 106 alGs~~~ 112 (405)
T COG1252 106 ALGSETN 112 (405)
T ss_pred ecCCcCC
Confidence 9998775
No 258
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.78 E-value=6.9e-05 Score=67.30 Aligned_cols=134 Identities=29% Similarity=0.408 Sum_probs=77.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCCccc--ceee-----CcchHHHHHHcCCcchhhcccceeee
Q 009785 60 DADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLSEPDRIV--GELL-----QPGGYLKLIELGLEDCVEQIDAQRVF 130 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~--G~~V~l~Er~~~~~~~~~--g~~l-----~~~~~~~l~~lGl~~~l~~~~~~~~~ 130 (526)
+.||+|||||.+||++|+..+++ .++|.++|..-.+..... |..+ ...+...|+++|+.-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpY----------- 144 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPY----------- 144 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCc-----------
Confidence 46999999999999999999854 589999999865433211 1111 112223344444420
Q ss_pred eeEEEECCeeeeecCCCcCCCCCcccc-ee-echHHHHHHHHHHHcCCCeEEEece-EEEEEeeC---C--eEEEEEE--
Q 009785 131 GYALFKDGNRTQISYPLEKFHSDVAGR-GF-HNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK---G--TIKGVQY-- 200 (526)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~---~--~v~gv~v-- 200 (526)
++ ...+ .+ |-..|...........|++.+++.+ |+++.... + ++.||..
T Consensus 145 -----------------ed----egdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNW 203 (328)
T KOG2960|consen 145 -----------------ED----EGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNW 203 (328)
T ss_pred -----------------cc----CCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeee
Confidence 00 0111 12 2334667777777788999999886 77776432 2 2333321
Q ss_pred --Ee-CCCc-----EEEEEcCeEEEeecCCccc
Q 009785 201 --KT-KAGE-----ELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 201 --~~-~~G~-----~~~i~a~~vV~ADG~~S~v 225 (526)
.. ..|. +-.+++.+||-++|...++
T Consensus 204 tLV~qnHgtQsCMDPNviea~~vvS~tGHDGPF 236 (328)
T KOG2960|consen 204 TLVTQNHGTQSCMDPNVIEAAVVVSTTGHDGPF 236 (328)
T ss_pred EEeeeccCccccCCCCeeeEEEEEEccCCCCCc
Confidence 11 2221 2246677777777755543
No 259
>PLN02268 probable polyamine oxidase
Probab=97.77 E-value=2.9e-05 Score=81.28 Aligned_cols=38 Identities=34% Similarity=0.480 Sum_probs=34.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR 98 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~ 98 (526)
.+|+|||||++||++|+.|.+.|++|+|+|+++....+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 37999999999999999999999999999998765543
No 260
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00023 Score=64.61 Aligned_cols=117 Identities=19% Similarity=0.295 Sum_probs=76.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCe
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 139 (526)
...|+|||.||++-++|+++++..++.+|+|-..... +.|++.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~-------i~pGGQ------------------------------ 50 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG-------IAPGGQ------------------------------ 50 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC-------cCCCce------------------------------
Confidence 4589999999999999999999999999999763211 111110
Q ss_pred eeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
.......++++.-+. .+.-.+|.+.++++..+. +.++...+|.++.....-.. +.++.+ .+.||.||.|+
T Consensus 51 -LtTTT~veNfPGFPd--gi~G~~l~d~mrkqs~r~-Gt~i~tEtVskv~~sskpF~---l~td~~---~v~~~avI~at 120 (322)
T KOG0404|consen 51 -LTTTTDVENFPGFPD--GITGPELMDKMRKQSERF-GTEIITETVSKVDLSSKPFK---LWTDAR---PVTADAVILAT 120 (322)
T ss_pred -eeeeeccccCCCCCc--ccccHHHHHHHHHHHHhh-cceeeeeehhhccccCCCeE---EEecCC---ceeeeeEEEec
Confidence 000111112211111 234567899999999988 78888888888876554322 223222 36799999999
Q ss_pred cCCc
Q 009785 220 GCFS 223 (526)
Q Consensus 220 G~~S 223 (526)
|+..
T Consensus 121 GAsA 124 (322)
T KOG0404|consen 121 GASA 124 (322)
T ss_pred ccce
Confidence 9743
No 261
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.76 E-value=0.0007 Score=70.94 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=68.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||++|+.+|..|++.|.+|+|+|+.+.....
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------------------------------ 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------------------------------
Confidence 47999999999999999999999999999998531000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +++++.+ +++++..+++. +.+.. +|+ ++.+|.||.|.
T Consensus 196 -------------------~~~~~~~~~~~~l~~~-GI~i~~~~~V~~i~~~~~~---v~v~~-~g~--~i~~D~viva~ 249 (438)
T PRK07251 196 -------------------EEPSVAALAKQYMEED-GITFLLNAHTTEVKNDGDQ---VLVVT-EDE--TYRFDALLYAT 249 (438)
T ss_pred -------------------CCHHHHHHHHHHHHHc-CCEEEcCCEEEEEEecCCE---EEEEE-CCe--EEEcCEEEEee
Confidence 0012334445555555 7999887 48888765553 33333 343 47799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 250 G~~p~~ 255 (438)
T PRK07251 250 GRKPNT 255 (438)
T ss_pred CCCCCc
Confidence 987654
No 262
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.76 E-value=0.00042 Score=73.23 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=70.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-------------------------~----------------- 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-------------------------A----------------- 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-------------------------c-----------------
Confidence 4799999999999999999999999999998853100 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +.++.+ +++++..+++.+ .+++.+.+|+..++.+|.||.|.
T Consensus 213 -------------------~d~~~~~~~~~~l~~~--v~i~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~i~~D~vi~a~ 270 (471)
T PRK06467 213 -------------------ADKDIVKVFTKRIKKQ--FNIMLETKVTAVEAKEDGI-YVTMEGKKAPAEPQRYDAVLVAV 270 (471)
T ss_pred -------------------CCHHHHHHHHHHHhhc--eEEEcCCEEEEEEEcCCEE-EEEEEeCCCcceEEEeCEEEEee
Confidence 0012334444455443 677777 488887655543 24444444444568899999999
Q ss_pred cCCcccc
Q 009785 220 GCFSNLR 226 (526)
Q Consensus 220 G~~S~vR 226 (526)
|......
T Consensus 271 G~~pn~~ 277 (471)
T PRK06467 271 GRVPNGK 277 (471)
T ss_pred cccccCC
Confidence 9887653
No 263
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.76 E-value=0.00033 Score=72.35 Aligned_cols=98 Identities=24% Similarity=0.288 Sum_probs=69.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+....+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN----------------------------------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh-----------------------------------------
Confidence 469999999999999999999999999999874210000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+...+.+.+++. +++++.++ ++++.. ++. +.+...+|+ ++.+|+||.|.
T Consensus 184 -------------------~~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~-~~~---~~v~l~~g~--~i~aD~Vv~a~ 237 (396)
T PRK09754 184 -------------------APPPVQRYLLQRHQQA-GVRILLNNAIEHVVD-GEK---VELTLQSGE--TLQADVVIYGI 237 (396)
T ss_pred -------------------cCHHHHHHHHHHHHHC-CCEEEeCCeeEEEEc-CCE---EEEEECCCC--EEECCEEEECC
Confidence 0012334555555665 79998874 888865 332 334456676 46799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 238 G~~pn~ 243 (396)
T PRK09754 238 GISAND 243 (396)
T ss_pred CCChhh
Confidence 987653
No 264
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.75 E-value=3.3e-05 Score=77.68 Aligned_cols=38 Identities=39% Similarity=0.547 Sum_probs=34.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR 98 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~ 98 (526)
-+++|||||++|+++|+.|++.|++|.|+||.++...+
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 47999999999999999999999999999999875543
No 265
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.75 E-value=3.7e-05 Score=77.97 Aligned_cols=36 Identities=44% Similarity=0.593 Sum_probs=32.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~ 96 (526)
+||+|||||++|+++|..|++.|.+|+|+|++....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 699999999999999999999999999999975443
No 266
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.73 E-value=4.4e-05 Score=73.18 Aligned_cols=35 Identities=31% Similarity=0.616 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
++||+|||||.+|+++|+.|+++|.+|.|+-+..+
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 68999999999999999999999999999998854
No 267
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.72 E-value=0.00035 Score=74.81 Aligned_cols=96 Identities=29% Similarity=0.326 Sum_probs=72.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||..|+-+|..|+..|.+|+|+++++....
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------------------------------------------
Confidence 4799999999999999999999999999988742100
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEe
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC 218 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~A 218 (526)
...|.+.+.+..++.++.++ ++++..+++.+.++++.+ .+|++.++.+|.++.|
T Consensus 389 ------------------------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~ 444 (517)
T PRK15317 389 ------------------------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQ 444 (517)
T ss_pred ------------------------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEe
Confidence 01223344444589999885 888887767777777765 4566667999999999
Q ss_pred ecCCc
Q 009785 219 DGCFS 223 (526)
Q Consensus 219 DG~~S 223 (526)
.|...
T Consensus 445 ~G~~p 449 (517)
T PRK15317 445 IGLVP 449 (517)
T ss_pred ECCcc
Confidence 99754
No 268
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.68 E-value=4.8e-05 Score=85.64 Aligned_cols=35 Identities=37% Similarity=0.511 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
..+|+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999999999999999864
No 269
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.67 E-value=0.00056 Score=73.16 Aligned_cols=96 Identities=29% Similarity=0.351 Sum_probs=70.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-------------------------------------------- 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-------------------------------------------- 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------
Confidence 489999999999999999999999999998763200
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEe
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC 218 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~A 218 (526)
....+.+.+.+..++.++.++ ++++..+++++.+|++.+ .+|+..++.+|.||.|
T Consensus 389 -----------------------~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a 445 (515)
T TIGR03140 389 -----------------------ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQ 445 (515)
T ss_pred -----------------------hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEE
Confidence 001123334433479998885 888877667777777765 3455567889999999
Q ss_pred ecCCc
Q 009785 219 DGCFS 223 (526)
Q Consensus 219 DG~~S 223 (526)
.|...
T Consensus 446 ~G~~P 450 (515)
T TIGR03140 446 IGLVP 450 (515)
T ss_pred eCCcC
Confidence 99654
No 270
>PLN02568 polyamine oxidase
Probab=97.66 E-value=7.1e-05 Score=79.95 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC-----CeEEEEecCCCCCCc
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDG-----RRVHVIERDLSEPDR 98 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G-----~~V~l~Er~~~~~~~ 98 (526)
+..||+|||||++||++|..|++.| ++|+|+|++.....+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 3579999999999999999999888 899999998766543
No 271
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.63 E-value=0.0029 Score=63.61 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=49.3
Q ss_pred cceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 156 GRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 156 ~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
+..++...+...|.+.+.+. +++++.+ +|+++..+++++.+|. +.+| +++||.||.|+|.++.
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~-g~~~~~~~~v~~i~~~~~~~~~v~--~~~g---~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKL-GVEIIEHTEVQHIEIRGEKVTAIV--TPSG---DVQADQVVLAAGAWAG 194 (337)
T ss_pred CceEChHHHHHHHHHHHHHc-CCEEEccceEEEEEeeCCEEEEEE--cCCC---EEECCEEEEcCChhhh
Confidence 34567788999999999988 6888887 5999988777665543 4555 3679999999999985
No 272
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.62 E-value=0.0017 Score=68.16 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=70.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+..-..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------ 204 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------------------------------ 204 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------------------------------
Confidence 47999999999999999999999999999988421000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +++++.++ ++++..+++.. +.+...+|+ .++.+|.||.|.
T Consensus 205 -------------------~d~~~~~~~~~~l~~~-gI~i~~~~~v~~i~~~~~~~--~~v~~~~g~-~~i~~D~vi~a~ 261 (450)
T TIGR01421 205 -------------------FDSMISETITEEYEKE-GINVHKLSKPVKVEKTVEGK--LVIHFEDGK-SIDDVDELIWAI 261 (450)
T ss_pred -------------------cCHHHHHHHHHHHHHc-CCEEEcCCEEEEEEEeCCce--EEEEECCCc-EEEEcCEEEEee
Confidence 0012344555555555 79999884 88887654432 233344563 357899999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 262 G~~pn~ 267 (450)
T TIGR01421 262 GRKPNT 267 (450)
T ss_pred CCCcCc
Confidence 987665
No 273
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.62 E-value=0.0018 Score=68.02 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=69.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+.... .
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------~----------------- 204 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-------------------------G----------------- 204 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-------------------------c-----------------
Confidence 3699999999999999999999999999998742100 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
...++...+.+.+.+. +++++.+ +++++..+++. +.+...+|+ ++.+|.||.|.
T Consensus 205 -------------------~d~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v~~~~g~--~i~~D~viva~ 259 (446)
T TIGR01424 205 -------------------FDDDMRALLARNMEGR-GIRIHPQTSLTSITKTDDG---LKVTLSHGE--EIVADVVLFAT 259 (446)
T ss_pred -------------------cCHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCe---EEEEEcCCc--EeecCEEEEee
Confidence 0012334455555555 7999888 48888765553 334444565 47799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 260 G~~pn~ 265 (446)
T TIGR01424 260 GRSPNT 265 (446)
T ss_pred CCCcCC
Confidence 987654
No 274
>PRK06116 glutathione reductase; Validated
Probab=97.62 E-value=0.00079 Score=70.83 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------~----------------- 205 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-------------------------G----------------- 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-------------------------c-----------------
Confidence 4799999999999999999999999999998742100 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +++++.++ |.++..+++.. +.+...+|+ ++.+|.||.|.
T Consensus 206 -------------------~~~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~g~--~~v~~~~g~--~i~~D~Vv~a~ 261 (450)
T PRK06116 206 -------------------FDPDIRETLVEEMEKK-GIRLHTNAVPKAVEKNADGS--LTLTLEDGE--TLTVDCLIWAI 261 (450)
T ss_pred -------------------cCHHHHHHHHHHHHHC-CcEEECCCEEEEEEEcCCce--EEEEEcCCc--EEEeCEEEEee
Confidence 0012334555555555 79998884 99988654431 334455665 46799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 262 G~~p~~ 267 (450)
T PRK06116 262 GREPNT 267 (450)
T ss_pred CCCcCC
Confidence 976543
No 275
>PLN02507 glutathione reductase
Probab=97.62 E-value=0.0016 Score=69.33 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=70.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-. .
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------~----------------- 241 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-------------------------G----------------- 241 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-------------------------c-----------------
Confidence 4799999999999999999999999999998742100 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +++++.++ |+++..+++. +.+...+|+ ++.+|.|+.|.
T Consensus 242 -------------------~d~~~~~~l~~~l~~~-GI~i~~~~~V~~i~~~~~~---~~v~~~~g~--~i~~D~vl~a~ 296 (499)
T PLN02507 242 -------------------FDDEMRAVVARNLEGR-GINLHPRTNLTQLTKTEGG---IKVITDHGE--EFVADVVLFAT 296 (499)
T ss_pred -------------------cCHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCe---EEEEECCCc--EEEcCEEEEee
Confidence 0012334455555555 79998884 8898765553 334455665 47799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 297 G~~pn~ 302 (499)
T PLN02507 297 GRAPNT 302 (499)
T ss_pred cCCCCC
Confidence 987765
No 276
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.61 E-value=0.00019 Score=71.33 Aligned_cols=69 Identities=32% Similarity=0.385 Sum_probs=49.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeE--EEEecCCCCCCcccc-----e--------eeC---c---chHHHHHHcCC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRV--HVIERDLSEPDRIVG-----E--------LLQ---P---GGYLKLIELGL 117 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V--~l~Er~~~~~~~~~g-----~--------~l~---~---~~~~~l~~lGl 117 (526)
...+|+|||||++||++|++|++.+-+| +|+|..+......+. . .+. + ..+..++++|+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl 89 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL 89 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence 3579999999999999999999998655 669998765443222 1 122 2 34466789999
Q ss_pred cchhhcccce
Q 009785 118 EDCVEQIDAQ 127 (526)
Q Consensus 118 ~~~l~~~~~~ 127 (526)
++++..++..
T Consensus 90 ~~e~~~i~~~ 99 (491)
T KOG1276|consen 90 EDELQPIDIS 99 (491)
T ss_pred cceeeecCCC
Confidence 9877766543
No 277
>PRK12831 putative oxidoreductase; Provisional
Probab=97.58 E-value=8.9e-05 Score=78.03 Aligned_cols=35 Identities=37% Similarity=0.450 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
..||+||||||+|+++|..|+++|++|+|+|+...
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 57999999999999999999999999999998753
No 278
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.58 E-value=0.00039 Score=71.35 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G--~~V~l~Er~~~ 94 (526)
.+|+|||||+||+++|..|++.+ .+|+|+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 48999999999999999998854 68999999863
No 279
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.57 E-value=0.00097 Score=70.38 Aligned_cols=101 Identities=24% Similarity=0.297 Sum_probs=69.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+...+.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 207 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------------------------------ 207 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------------------------------
Confidence 47999999999999999999999999999988421000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+...+.+.+++. +.++.+ +++++..+++ ..+++...+|+..++.+|.||.|.
T Consensus 208 -------------------~d~~~~~~~~~~l~~~--I~i~~~~~v~~i~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~ 264 (460)
T PRK06292 208 -------------------EDPEVSKQAQKILSKE--FKIKLGAKVTSVEKSGD--EKVEELEKGGKTETIEADYVLVAT 264 (460)
T ss_pred -------------------hhHHHHHHHHHHHhhc--cEEEcCCEEEEEEEcCC--ceEEEEEcCCceEEEEeCEEEEcc
Confidence 0012334444555543 778777 4888876543 134443444555568899999999
Q ss_pred cCCcccc
Q 009785 220 GCFSNLR 226 (526)
Q Consensus 220 G~~S~vR 226 (526)
|......
T Consensus 265 G~~p~~~ 271 (460)
T PRK06292 265 GRRPNTD 271 (460)
T ss_pred CCccCCC
Confidence 9876543
No 280
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.57 E-value=0.0011 Score=69.54 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------------------------------ 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------------------------------
Confidence 37999999999999999999999999999987421000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +++++.+ +++++..+++. +.+...+++ +.+|.||.|.
T Consensus 197 -------------------~~~~~~~~l~~~l~~~-gV~v~~~~~v~~i~~~~~~---v~v~~~~g~---i~~D~vl~a~ 250 (441)
T PRK08010 197 -------------------EDRDIADNIATILRDQ-GVDIILNAHVERISHHENQ---VQVHSEHAQ---LAVDALLIAS 250 (441)
T ss_pred -------------------cCHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEEEEcCCe---EEeCEEEEee
Confidence 0012344556666665 7999887 48888766553 344444453 6699999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 251 G~~pn~ 256 (441)
T PRK08010 251 GRQPAT 256 (441)
T ss_pred cCCcCC
Confidence 988764
No 281
>PRK10262 thioredoxin reductase; Provisional
Probab=97.56 E-value=0.0012 Score=66.13 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=71.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||+|..|+-+|..|++.|.+|+++++.+... .
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---------~---------------------------------- 183 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---------A---------------------------------- 183 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---------C----------------------------------
Confidence 479999999999999999999999999999874200 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC--CCcEEEEEcCeEEE
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK--AGEELTAYAPLTIV 217 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~--~G~~~~i~a~~vV~ 217 (526)
...+.+.+.+.+++. +++++.++ ++++..+++++.+|++.+. +++..++.+|.||.
T Consensus 184 --------------------~~~~~~~~~~~l~~~-gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~ 242 (321)
T PRK10262 184 --------------------EKILIKRLMDKVENG-NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFV 242 (321)
T ss_pred --------------------CHHHHHHHHhhccCC-CeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEE
Confidence 001233444455554 79988874 8888766555666777643 23445688999999
Q ss_pred eecCCc
Q 009785 218 CDGCFS 223 (526)
Q Consensus 218 ADG~~S 223 (526)
|.|...
T Consensus 243 a~G~~p 248 (321)
T PRK10262 243 AIGHSP 248 (321)
T ss_pred EeCCcc
Confidence 999654
No 282
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.55 E-value=0.00095 Score=70.19 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
+|||+|||+||+|..+|.. ..|.+|+|+|++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence 5999999999999988654 479999999986
No 283
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.54 E-value=0.00035 Score=70.32 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S 223 (526)
...+.+++.+.+. ++++++.+ |.+++..++.+.+|. ..+|. ++.+|+||.|-|..+
T Consensus 174 ~vvkni~~~l~~~-G~ei~f~t~VeDi~~~~~~~~~v~--~~~g~--~i~~~~vvlA~Grsg 230 (486)
T COG2509 174 KVVKNIREYLESL-GGEIRFNTEVEDIEIEDNEVLGVK--LTKGE--EIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHhc-CcEEEeeeEEEEEEecCCceEEEE--ccCCc--EEecCEEEEccCcch
Confidence 5678899999998 58888775 999998777655444 45675 477999999999776
No 284
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.54 E-value=0.00012 Score=70.24 Aligned_cols=36 Identities=36% Similarity=0.586 Sum_probs=33.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~ 96 (526)
+|++|||||.+|+.+|..|+++|.+|+|+||++...
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 799999999999999999999999999999997544
No 285
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.53 E-value=0.00011 Score=75.85 Aligned_cols=34 Identities=35% Similarity=0.619 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
++||+|||+|++|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999874
No 286
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.53 E-value=0.001 Score=65.67 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=67.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||+|++|+-+|..|++.|.+|+++++.+... .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~--------------------~----------------------- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR--------------------A----------------------- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--------------------c-----------------------
Confidence 489999999999999999999999999999863100 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEe
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC 218 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~A 218 (526)
. ..+.+.+.+..++.++.++ ++++..++ ++.++++.+ .+|+..++.+|.+|.|
T Consensus 179 --------------------~----~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~a 233 (300)
T TIGR01292 179 --------------------E----KILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFIA 233 (300)
T ss_pred --------------------C----HHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEEe
Confidence 0 0122233344478888774 88887654 455566654 3566667899999999
Q ss_pred ecCCc
Q 009785 219 DGCFS 223 (526)
Q Consensus 219 DG~~S 223 (526)
.|...
T Consensus 234 ~G~~~ 238 (300)
T TIGR01292 234 IGHEP 238 (300)
T ss_pred eCCCC
Confidence 99543
No 287
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.53 E-value=0.0014 Score=69.18 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=70.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||..|+-+|..|++.|.+|+++|+.+.....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG------------------------------------------ 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC------------------------------------------
Confidence 37999999999999999999999999999987421000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+...+.+.+.+. ++.++.+ +++++..++++ +.+...+|+ ++.+|.||.|.
T Consensus 216 -------------------~d~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~---~~v~~~~g~--~l~~D~vl~a~ 270 (466)
T PRK07845 216 -------------------EDADAAEVLEEVFARR-GMTVLKRSRAESVERTGDG---VVVTLTDGR--TVEGSHALMAV 270 (466)
T ss_pred -------------------CCHHHHHHHHHHHHHC-CcEEEcCCEEEEEEEeCCE---EEEEECCCc--EEEecEEEEee
Confidence 0011334455555555 7999888 48888766554 334445665 47799999999
Q ss_pred cCCcccc
Q 009785 220 GCFSNLR 226 (526)
Q Consensus 220 G~~S~vR 226 (526)
|......
T Consensus 271 G~~pn~~ 277 (466)
T PRK07845 271 GSVPNTA 277 (466)
T ss_pred cCCcCCC
Confidence 9877653
No 288
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.52 E-value=0.0012 Score=68.55 Aligned_cols=45 Identities=27% Similarity=0.154 Sum_probs=31.8
Q ss_pred CeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcccc
Q 009785 177 NVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLR 226 (526)
Q Consensus 177 ~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR 226 (526)
+.+++.++ |+++..++++ |++...+|+ ++.||.||.|.......+
T Consensus 223 g~~i~l~~~V~~I~~~~~~---v~v~~~~g~--~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDGG---VTVTTEDGE--TIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGGEESSEEEEEEEEESSE---EEEEETTSS--EEEESEEEE-S-HHHHHT
T ss_pred CceeecCCcceeccccccc---cccccccce--EEecceeeecCchhhhhh
Confidence 44788885 9999998874 556677787 467999998887655443
No 289
>PRK07846 mycothione reductase; Reviewed
Probab=97.52 E-value=0.0015 Score=68.63 Aligned_cols=97 Identities=24% Similarity=0.348 Sum_probs=66.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... + ..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll---------~----------------~~---------------- 205 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL---------R----------------HL---------------- 205 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------c----------------cc----------------
Confidence 479999999999999999999999999999874210 0 00
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
..++.+.+.+.. +. ++.++.+ +++++..+++. +.+...+|+ ++.+|.||.|.
T Consensus 206 --------------------d~~~~~~l~~l~-~~-~v~i~~~~~v~~i~~~~~~---v~v~~~~g~--~i~~D~vl~a~ 258 (451)
T PRK07846 206 --------------------DDDISERFTELA-SK-RWDVRLGRNVVGVSQDGSG---VTLRLDDGS--TVEADVLLVAT 258 (451)
T ss_pred --------------------CHHHHHHHHHHH-hc-CeEEEeCCEEEEEEEcCCE---EEEEECCCc--EeecCEEEEEE
Confidence 001222233222 33 5888877 48888766553 344455665 47799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 259 G~~pn~ 264 (451)
T PRK07846 259 GRVPNG 264 (451)
T ss_pred CCccCc
Confidence 987654
No 290
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.51 E-value=0.0079 Score=64.44 Aligned_cols=73 Identities=25% Similarity=0.255 Sum_probs=57.6
Q ss_pred eeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCcc-ccccccC
Q 009785 158 GFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSN-LRRSLCN 231 (526)
Q Consensus 158 ~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~-vR~~l~~ 231 (526)
.++...+...+.+.+.+. |+++..+ +|+++..+++++.+|++.+ .+|+..+++|+.||.|.|.+|. +.+.++.
T Consensus 124 ~vdp~~l~~al~~~A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEH-GARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL 199 (516)
T ss_pred EECHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence 567778888898999888 6777776 5999998888888888865 4566667899999999999984 5555554
No 291
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.51 E-value=0.00015 Score=76.08 Aligned_cols=37 Identities=46% Similarity=0.537 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAK--DGRRVHVIERDLSEP 96 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~--~G~~V~l~Er~~~~~ 96 (526)
..+|+||||||||+++|..|++ .|++|+|+|+.+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 4689999999999999999987 799999999997654
No 292
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.45 E-value=0.00084 Score=65.13 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=44.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCccc---------c-----------eeeCcchHHHHHHcCCcc
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIV---------G-----------ELLQPGGYLKLIELGLED 119 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~---------g-----------~~l~~~~~~~l~~lGl~~ 119 (526)
..+|+|||+|++||++|+.|+++ .+|+|+|.+.....+.. | +.--|+-.+.++.+|+..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t 86 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDT 86 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCC
Confidence 46899999999999999999987 79999999865433211 1 112355667888888863
No 293
>PLN02785 Protein HOTHEAD
Probab=97.45 E-value=0.00033 Score=75.60 Aligned_cols=36 Identities=42% Similarity=0.493 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
...||+||||||.+|+.+|..|++ +.+|+|+|+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446999999999999999999999 699999999864
No 294
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.44 E-value=0.00014 Score=80.21 Aligned_cols=38 Identities=39% Similarity=0.496 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~ 97 (526)
..+|+|||||++|+++|+.|++.|++|+|+|++.....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 57899999999999999999999999999999876543
No 295
>PLN02676 polyamine oxidase
Probab=97.44 E-value=0.00017 Score=76.29 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPD 97 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~~~~~ 97 (526)
.+||+|||||++||++|+.|+++|. +|+|+|++.....
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 4799999999999999999999998 6999999876543
No 296
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.43 E-value=0.00017 Score=81.04 Aligned_cols=35 Identities=46% Similarity=0.593 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
..+|+||||||||+++|..|+++|++|+|+|+.+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 45899999999999999999999999999999864
No 297
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.42 E-value=0.00018 Score=79.23 Aligned_cols=36 Identities=42% Similarity=0.593 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
..+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 468999999999999999999999999999998653
No 298
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.41 E-value=0.00032 Score=72.71 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHH-HhCCCeEEEEecCCCCC
Q 009785 60 DADVIVVGAGVAGAALANTL-AKDGRRVHVIERDLSEP 96 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~L-a~~G~~V~l~Er~~~~~ 96 (526)
...|+||||||+|+.+|..| ++.|++|+|+||.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 35799999999999999965 56799999999997654
No 299
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.40 E-value=0.00019 Score=75.33 Aligned_cols=35 Identities=46% Similarity=0.537 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
..+|+||||||+|+++|..|+++|++|+|+|+.+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47999999999999999999999999999999753
No 300
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.40 E-value=0.00016 Score=80.23 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
..+|+||||||||+++|+.|++.|++|+|+|+.+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 4689999999999999999999999999999863
No 301
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.37 E-value=0.0002 Score=82.03 Aligned_cols=36 Identities=36% Similarity=0.326 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
..+|+|||||||||++|..|++.|++|+|+|+.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 468999999999999999999999999999998644
No 302
>PLN02529 lysine-specific histone demethylase 1
Probab=97.36 E-value=0.00025 Score=77.74 Aligned_cols=37 Identities=41% Similarity=0.504 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~ 96 (526)
..+|+|||||++|+++|..|+++|++|+|+|++....
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G 196 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPG 196 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCc
Confidence 5789999999999999999999999999999986543
No 303
>PRK14694 putative mercuric reductase; Provisional
Probab=97.36 E-value=0.0027 Score=67.19 Aligned_cols=96 Identities=22% Similarity=0.264 Sum_probs=68.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+++++... +. .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~---------l~-~--------------------------------- 215 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRV---------LS-Q--------------------------------- 215 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC---------CC-C---------------------------------
Confidence 4799999999999999999999999999986421 00 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +++++.+ ++.++..+++. +.+...++ ++.+|.||.|.
T Consensus 216 -------------------~~~~~~~~l~~~l~~~-GI~v~~~~~v~~i~~~~~~---~~v~~~~~---~i~~D~vi~a~ 269 (468)
T PRK14694 216 -------------------EDPAVGEAIEAAFRRE-GIEVLKQTQASEVDYNGRE---FILETNAG---TLRAEQLLVAT 269 (468)
T ss_pred -------------------CCHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEEEECCC---EEEeCEEEEcc
Confidence 0012334555555555 7999888 58888765543 33444444 37799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 270 G~~pn~ 275 (468)
T PRK14694 270 GRTPNT 275 (468)
T ss_pred CCCCCc
Confidence 988765
No 304
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.35 E-value=0.0018 Score=72.80 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-.++|||||+.|+-+|..|++.|.+|+|+|+.+....+ .+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~-----------------~l----------------------- 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE-----------------QL----------------------- 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh-----------------hc-----------------------
Confidence 36999999999999999999999999999987421000 00
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEEcCeEEEe
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIVC 218 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~-~~v~gv~v~~~~G~~~~i~a~~vV~A 218 (526)
.....+.+.+.+++. +++++.++ ++++..++ +.+ ..+...+|+ ++.+|+||.|
T Consensus 186 --------------------d~~~~~~l~~~L~~~-GV~v~~~~~v~~I~~~~~~~~--~~v~~~dG~--~i~~D~Vv~A 240 (847)
T PRK14989 186 --------------------DQMGGEQLRRKIESM-GVRVHTSKNTLEIVQEGVEAR--KTMRFADGS--ELEVDFIVFS 240 (847)
T ss_pred --------------------CHHHHHHHHHHHHHC-CCEEEcCCeEEEEEecCCCce--EEEEECCCC--EEEcCEEEEC
Confidence 011334555566666 79999885 88887543 222 234456776 4779999999
Q ss_pred ecCCccc
Q 009785 219 DGCFSNL 225 (526)
Q Consensus 219 DG~~S~v 225 (526)
.|.....
T Consensus 241 ~G~rPn~ 247 (847)
T PRK14989 241 TGIRPQD 247 (847)
T ss_pred CCcccCc
Confidence 9987654
No 305
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.34 E-value=0.002 Score=72.37 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=68.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-.+ . +
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~--l----------------------- 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------Q--L----------------------- 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------h--c-----------------------
Confidence 46999999999999999999999999999987421000 0 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
.......+.+.+++. +++++.++ ++++..++ .+.+|+ ..+|+ ++.+|+||.|.
T Consensus 181 --------------------d~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~-~~~~v~--~~dG~--~i~~D~Vi~a~ 234 (785)
T TIGR02374 181 --------------------DQTAGRLLQRELEQK-GLTFLLEKDTVEIVGAT-KADRIR--FKDGS--SLEADLIVMAA 234 (785)
T ss_pred --------------------CHHHHHHHHHHHHHc-CCEEEeCCceEEEEcCC-ceEEEE--ECCCC--EEEcCEEEECC
Confidence 001234445555555 79999885 88886543 333344 45676 47799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 235 G~~Pn~ 240 (785)
T TIGR02374 235 GIRPND 240 (785)
T ss_pred CCCcCc
Confidence 987543
No 306
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.32 E-value=0.0062 Score=64.06 Aligned_cols=97 Identities=24% Similarity=0.357 Sum_probs=66.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+.... . +
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~----------------~--~----------------------- 208 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR----------------H--L----------------------- 208 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc----------------c--c-----------------------
Confidence 4799999999999999999999999999998742100 0 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
...+.+.+.+.. +. ++.++.+ +++++..+++. +.+...+|+ ++.+|.|+.|.
T Consensus 209 --------------------d~~~~~~l~~~~-~~-gI~i~~~~~V~~i~~~~~~---v~v~~~~g~--~i~~D~vl~a~ 261 (452)
T TIGR03452 209 --------------------DEDISDRFTEIA-KK-KWDIRLGRNVTAVEQDGDG---VTLTLDDGS--TVTADVLLVAT 261 (452)
T ss_pred --------------------CHHHHHHHHHHH-hc-CCEEEeCCEEEEEEEcCCe---EEEEEcCCC--EEEcCEEEEee
Confidence 001222233322 23 6888877 58888766553 334445565 47799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 262 G~~pn~ 267 (452)
T TIGR03452 262 GRVPNG 267 (452)
T ss_pred ccCcCC
Confidence 977643
No 307
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.32 E-value=0.00027 Score=79.07 Aligned_cols=35 Identities=40% Similarity=0.516 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
..+|+||||||||+++|..|+++|++|+|+|+.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 46999999999999999999999999999999743
No 308
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.32 E-value=0.0023 Score=66.22 Aligned_cols=101 Identities=30% Similarity=0.332 Sum_probs=71.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
.+|+|||+|+.|+.+|..|+++|++|+++|+.+.......
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~---------------------------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL---------------------------------------- 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence 6899999999999999999999999999999853211100
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
. ..+.+.+.+.+++. +++++.++ +.+++...+..........++. .+.+|+++.+.
T Consensus 177 -------------------~-~~~~~~~~~~l~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~ 233 (415)
T COG0446 177 -------------------D-PEVAEELAELLEKY-GVELLLGTKVVGVEGKGNTLVVERVVGIDGE--EIKADLVIIGP 233 (415)
T ss_pred -------------------h-HHHHHHHHHHHHHC-CcEEEeCCceEEEEcccCcceeeEEEEeCCc--EEEeeEEEEee
Confidence 0 23556666666776 58887775 8888876554322112334454 46799999999
Q ss_pred cCCcc
Q 009785 220 GCFSN 224 (526)
Q Consensus 220 G~~S~ 224 (526)
|..-+
T Consensus 234 g~~p~ 238 (415)
T COG0446 234 GERPN 238 (415)
T ss_pred ccccc
Confidence 97664
No 309
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.30 E-value=0.0027 Score=66.70 Aligned_cols=97 Identities=25% Similarity=0.372 Sum_probs=67.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||++|+-+|..|++.|.+|+++++.+.....
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 187 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD------------------------------------------ 187 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch------------------------------------------
Confidence 47999999999999999999999999999986421000
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
. ....+.+.+.+.+++. +++++.++ ++++..+ +.+..+ ..+++ ++.+|++|.|.
T Consensus 188 ---~---------------~~~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~-~~~~~v--~~~~~---~i~~d~vi~a~ 242 (444)
T PRK09564 188 ---S---------------FDKEITDVMEEELREN-GVELHLNEFVKSLIGE-DKVEGV--VTDKG---EYEADVVIVAT 242 (444)
T ss_pred ---h---------------cCHHHHHHHHHHHHHC-CCEEEcCCEEEEEecC-CcEEEE--EeCCC---EEEcCEEEECc
Confidence 0 0112445566666666 78888774 8888643 333323 23333 37799999999
Q ss_pred cCCcc
Q 009785 220 GCFSN 224 (526)
Q Consensus 220 G~~S~ 224 (526)
|....
T Consensus 243 G~~p~ 247 (444)
T PRK09564 243 GVKPN 247 (444)
T ss_pred CCCcC
Confidence 98654
No 310
>PRK14727 putative mercuric reductase; Provisional
Probab=97.30 E-value=0.0033 Score=66.69 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=68.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||..|+-+|..|++.|.+|+|+++... +. .
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~---------l~-~--------------------------------- 225 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL---------LF-R--------------------------------- 225 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC---------CC-c---------------------------------
Confidence 4799999999999999999999999999987520 00 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +++++.+ +++++..+++. +.+...+++ +.+|.||.|.
T Consensus 226 -------------------~d~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~~---~~v~~~~g~---i~aD~VlvA~ 279 (479)
T PRK14727 226 -------------------EDPLLGETLTACFEKE-GIEVLNNTQASLVEHDDNG---FVLTTGHGE---LRAEKLLIST 279 (479)
T ss_pred -------------------chHHHHHHHHHHHHhC-CCEEEcCcEEEEEEEeCCE---EEEEEcCCe---EEeCEEEEcc
Confidence 0011334455555555 7999887 48888765553 344455553 6799999999
Q ss_pred cCCcccc
Q 009785 220 GCFSNLR 226 (526)
Q Consensus 220 G~~S~vR 226 (526)
|......
T Consensus 280 G~~pn~~ 286 (479)
T PRK14727 280 GRHANTH 286 (479)
T ss_pred CCCCCcc
Confidence 9987653
No 311
>PTZ00058 glutathione reductase; Provisional
Probab=97.30 E-value=0.0033 Score=67.51 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=67.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~-------------------------~----------------- 275 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR-------------------------K----------------- 275 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc-------------------------c-----------------
Confidence 4799999999999999999999999999998742100 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
+ ...+.+.+.+.+++. ++.++.+. +.++..+++. ++.+...++. .++.+|.|+.|.
T Consensus 276 ------------------~-d~~i~~~l~~~L~~~-GV~i~~~~~V~~I~~~~~~--~v~v~~~~~~-~~i~aD~VlvA~ 332 (561)
T PTZ00058 276 ------------------F-DETIINELENDMKKN-NINIITHANVEEIEKVKEK--NLTIYLSDGR-KYEHFDYVIYCV 332 (561)
T ss_pred ------------------C-CHHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCC--cEEEEECCCC-EEEECCEEEECc
Confidence 0 012334455555555 79998885 8888765432 2333333333 357899999999
Q ss_pred cCCcc
Q 009785 220 GCFSN 224 (526)
Q Consensus 220 G~~S~ 224 (526)
|....
T Consensus 333 Gr~Pn 337 (561)
T PTZ00058 333 GRSPN 337 (561)
T ss_pred CCCCC
Confidence 97654
No 312
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.29 E-value=0.00035 Score=73.67 Aligned_cols=36 Identities=42% Similarity=0.544 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 468999999999999999999999999999998653
No 313
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.29 E-value=0.0027 Score=66.27 Aligned_cols=96 Identities=22% Similarity=0.339 Sum_probs=67.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||++|+-+|..|++.|.+|+++++.+... .+ .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~--------~~----------------~----------------- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL--------NK----------------L----------------- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC--------cc----------------c-----------------
Confidence 479999999999999999999999999999874210 00 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +++++.++ ++++..++. + +. ..+|+ ++.+|.||.|.
T Consensus 177 -------------------~~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~-~--v~--~~~g~--~i~~D~vi~a~ 229 (427)
T TIGR03385 177 -------------------FDEEMNQIVEEELKKH-EINLRLNEEVDSIEGEER-V--KV--FTSGG--VYQADMVILAT 229 (427)
T ss_pred -------------------cCHHHHHHHHHHHHHc-CCEEEeCCEEEEEecCCC-E--EE--EcCCC--EEEeCEEEECC
Confidence 0012344455556665 79988774 888865432 2 22 34565 47799999999
Q ss_pred cCCcc
Q 009785 220 GCFSN 224 (526)
Q Consensus 220 G~~S~ 224 (526)
|....
T Consensus 230 G~~p~ 234 (427)
T TIGR03385 230 GIKPN 234 (427)
T ss_pred CccCC
Confidence 98754
No 314
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.28 E-value=0.0009 Score=75.07 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCeEEEEecCCCC
Q 009785 63 VIVVGAGVAGAALANTLAKD---GRRVHVIERDLSE 95 (526)
Q Consensus 63 VvIVGaG~aGl~~A~~La~~---G~~V~l~Er~~~~ 95 (526)
|+|||||+||+.+|..|.+. +++|+|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 68999999999999998775 4799999998653
No 315
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.27 E-value=0.0014 Score=73.70 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSE 95 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~----G~~V~l~Er~~~~ 95 (526)
.+|+|||+|++|+.+|..|.++ +++|+|+++.+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 4799999999999999999764 5799999998653
No 316
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.27 E-value=0.004 Score=65.91 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=68.5
Q ss_pred CcEEEECCCHHHHHHHHHHHh---CCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 61 ADVIVVGAGVAGAALANTLAK---DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~---~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
-+|+|||||+.|+-+|..++. .|.+|+|+|+.+.... .
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-------------------------~-------------- 228 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-------------------------G-------------- 228 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-------------------------c--------------
Confidence 469999999999999976654 4999999998843100 0
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEE
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTI 216 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV 216 (526)
....+.+.+.+.+++. +++++.++ ++++..+++....++ ..+|+ ++.+|.||
T Consensus 229 ----------------------~d~~~~~~l~~~L~~~-GI~i~~~~~v~~i~~~~~~~~~v~--~~~g~--~i~~D~vl 281 (486)
T TIGR01423 229 ----------------------FDSTLRKELTKQLRAN-GINIMTNENPAKVTLNADGSKHVT--FESGK--TLDVDVVM 281 (486)
T ss_pred ----------------------cCHHHHHHHHHHHHHc-CCEEEcCCEEEEEEEcCCceEEEE--EcCCC--EEEcCEEE
Confidence 0013445566666665 79998885 888876544322233 34554 47799999
Q ss_pred EeecCCcccc
Q 009785 217 VCDGCFSNLR 226 (526)
Q Consensus 217 ~ADG~~S~vR 226 (526)
.|.|......
T Consensus 282 ~a~G~~Pn~~ 291 (486)
T TIGR01423 282 MAIGRVPRTQ 291 (486)
T ss_pred EeeCCCcCcc
Confidence 9999876553
No 317
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.0011 Score=67.50 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC---CeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDG---RRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G---~~V~l~Er~~~ 94 (526)
++|+|||||++|+.+|..|.+.- -.+.|+|+++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 68999999999999999998752 23999999865
No 318
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.26 E-value=0.0039 Score=66.11 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=67.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCeee
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT 141 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 141 (526)
.++|||||+.|+-+|..|++.|.+|+|+++... +. .
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~---------l~-----------------~------------------ 217 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSIL---------LR-----------------G------------------ 217 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEeccc---------cc-----------------c------------------
Confidence 699999999999999999999999999986410 00 0
Q ss_pred eecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCc-EEEEEcCeEEEee
Q 009785 142 QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGE-ELTAYAPLTIVCD 219 (526)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~-~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +++++.+. ++++...++.+ .+++. +|+ ..++.+|.||.|.
T Consensus 218 ------------------~d~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~~-~v~~~--~~~~~~~i~~D~vl~a~ 275 (484)
T TIGR01438 218 ------------------FDQDCANKVGEHMEEH-GVKFKRQFVPIKVEQIEAKV-KVTFT--DSTNGIEEEYDTVLLAI 275 (484)
T ss_pred ------------------cCHHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeE-EEEEe--cCCcceEEEeCEEEEEe
Confidence 0012334555556555 79998885 77887655532 24433 332 2357899999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 276 G~~pn~ 281 (484)
T TIGR01438 276 GRDACT 281 (484)
T ss_pred cCCcCC
Confidence 976554
No 319
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0013 Score=63.50 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
.+||.+|||||.+||++|-..+..|.+|.++|--
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 3699999999999999999999999999999974
No 320
>PRK13748 putative mercuric reductase; Provisional
Probab=97.26 E-value=0.0061 Score=66.07 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=67.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+++... +. .
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~---------l~-~--------------------------------- 307 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL---------FF-R--------------------------------- 307 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc---------cc-c---------------------------------
Confidence 4799999999999999999999999999997521 00 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+.+.+.+.+++. +++++.++ ++++..+++. +.+...++ ++.+|.||.|.
T Consensus 308 -------------------~d~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~---~~v~~~~~---~i~~D~vi~a~ 361 (561)
T PRK13748 308 -------------------EDPAIGEAVTAAFRAE-GIEVLEHTQASQVAHVDGE---FVLTTGHG---ELRADKLLVAT 361 (561)
T ss_pred -------------------cCHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCE---EEEEecCC---eEEeCEEEEcc
Confidence 0011334455555555 79998874 8888765553 33444444 37799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 362 G~~pn~ 367 (561)
T PRK13748 362 GRAPNT 367 (561)
T ss_pred CCCcCC
Confidence 987655
No 321
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.19 E-value=0.0049 Score=65.60 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=68.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCeee
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT 141 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 141 (526)
+|+|||||+.|+-+|..|++.|.+|+|+++... +. .
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~---------l~-----------------~------------------ 219 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIP---------LR-----------------G------------------ 219 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc---------cc-----------------c------------------
Confidence 799999999999999999999999999986410 00 0
Q ss_pred eecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeec
Q 009785 142 QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG 220 (526)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG 220 (526)
....+.+.+.+.+++. +++++.++ +.++...++. +.+...+|++ +.+|.||.|.|
T Consensus 220 ------------------~d~~~~~~l~~~l~~~-GV~i~~~~~v~~v~~~~~~---~~v~~~~g~~--i~~D~vl~a~G 275 (499)
T PTZ00052 220 ------------------FDRQCSEKVVEYMKEQ-GTLFLEGVVPINIEKMDDK---IKVLFSDGTT--ELFDTVLYATG 275 (499)
T ss_pred ------------------CCHHHHHHHHHHHHHc-CCEEEcCCeEEEEEEcCCe---EEEEECCCCE--EEcCEEEEeeC
Confidence 0012334555556665 79988885 7778765443 3344456653 67999999999
Q ss_pred CCcccc
Q 009785 221 CFSNLR 226 (526)
Q Consensus 221 ~~S~vR 226 (526)
......
T Consensus 276 ~~pn~~ 281 (499)
T PTZ00052 276 RKPDIK 281 (499)
T ss_pred CCCCcc
Confidence 887653
No 322
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.18 E-value=0.00048 Score=75.68 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 468999999999999999999999999999998653
No 323
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00037 Score=74.66 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCC--cEEEEEcCeEEEeecCCcc
Q 009785 166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAG--EELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 166 ~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G--~~~~i~a~~vV~ADG~~S~ 224 (526)
..+...+.+.++.++..+. |+.+..+.+++++|++...++ .+....++.||.|.|+.-.
T Consensus 206 ~a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 206 RAYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hhcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 3445557777899999985 999999999999999987655 3455678888888887653
No 324
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.17 E-value=0.00054 Score=72.57 Aligned_cols=36 Identities=42% Similarity=0.557 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
..+|+|||||++|+++|..|+++|++|+|+|+.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 369999999999999999999999999999998643
No 325
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.16 E-value=0.004 Score=67.39 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 162 GRFVQRLREKAASLPNVRLEQGT-VTSLLEE-KGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 162 ~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~-~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
..+...|.+.+.+. +++++.++ ++++..+ +++|.||.+.+ .+|+...++|+.||.|+|+.+.+
T Consensus 126 ~~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKN-GTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhcc-CCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 35788888888765 79998885 9999864 68999998854 68887889999999999999864
No 326
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.15 E-value=0.0041 Score=65.12 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=66.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... +.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~---------~~--------------------------------- 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN---------KL--------------------------------- 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc---------hh---------------------------------
Confidence 379999999999999999999999999999874210 00
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
...++.+.+.+.+++. +++++.++ ++++.. . .+++ .+|+ ++.+|.||.|.
T Consensus 187 -------------------~d~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~--~---~v~~--~~g~--~~~~D~vl~a~ 237 (438)
T PRK13512 187 -------------------MDADMNQPILDELDKR-EIPYRLNEEIDAING--N---EVTF--KSGK--VEHYDMIIEGV 237 (438)
T ss_pred -------------------cCHHHHHHHHHHHHhc-CCEEEECCeEEEEeC--C---EEEE--CCCC--EEEeCEEEECc
Confidence 0012334555556655 79998874 888753 2 2333 4565 36799999999
Q ss_pred cCCccc
Q 009785 220 GCFSNL 225 (526)
Q Consensus 220 G~~S~v 225 (526)
|.....
T Consensus 238 G~~pn~ 243 (438)
T PRK13512 238 GTHPNS 243 (438)
T ss_pred CCCcCh
Confidence 987643
No 327
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.14 E-value=0.0048 Score=64.82 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
-+|+|||||..|+-+|..|.+.|.+|++++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999999874
No 328
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.11 E-value=0.0025 Score=64.19 Aligned_cols=139 Identities=25% Similarity=0.292 Sum_probs=74.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEecCCCCCC----cccceeeCcchHHHHHHcCCcchhhcccceeeee
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGR--RVHVIERDLSEPD----RIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG 131 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~--~V~l~Er~~~~~~----~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~ 131 (526)
.....|+|||||.++.-.+..|.+++- +|+++=|++.... ....+...|.-++.+..+.-.....-+....
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~--- 264 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQR--- 264 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG---
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhH---
Confidence 345789999999999999999998874 8999999864321 2233456666666655443321111110000
Q ss_pred eEEEECCeeeeecCCCcCCCCCcccceeechH---HHHHH-HHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEe-CC
Q 009785 132 YALFKDGNRTQISYPLEKFHSDVAGRGFHNGR---FVQRL-REKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKT-KA 204 (526)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~L-~~~a~~~~~v~i~~~~-v~~l~~~~-~~v~gv~v~~-~~ 204 (526)
....-.++... +.+.| .+.+...+.+.++.++ |+++..++ +++. +++++ .+
T Consensus 265 ---------------------~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~~~ 322 (341)
T PF13434_consen 265 ---------------------HTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRHRQT 322 (341)
T ss_dssp ---------------------GGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEETTT
T ss_pred ---------------------hhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEECCC
Confidence 00001122221 22222 2344444568888775 99998776 4554 66665 56
Q ss_pred CcEEEEEcCeEEEeecC
Q 009785 205 GEELTAYAPLTIVCDGC 221 (526)
Q Consensus 205 G~~~~i~a~~vV~ADG~ 221 (526)
|+..++.+|+||.|+|.
T Consensus 323 ~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 323 GEEETLEVDAVILATGY 339 (341)
T ss_dssp --EEEEEESEEEE---E
T ss_pred CCeEEEecCEEEEcCCc
Confidence 67778899999999994
No 329
>PLN02546 glutathione reductase
Probab=97.09 E-value=0.014 Score=62.83 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=68.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-------------------------~----------------- 290 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-------------------------G----------------- 290 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-------------------------c-----------------
Confidence 4799999999999999999999999999998742100 0
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
....+...+.+.+++. +++++.++ ++++..+++.. +.+...+++ ...+|.||.|.
T Consensus 291 -------------------~d~~~~~~l~~~L~~~-GV~i~~~~~v~~i~~~~~g~--v~v~~~~g~--~~~~D~Viva~ 346 (558)
T PLN02546 291 -------------------FDEEVRDFVAEQMSLR-GIEFHTEESPQAIIKSADGS--LSLKTNKGT--VEGFSHVMFAT 346 (558)
T ss_pred -------------------cCHHHHHHHHHHHHHC-CcEEEeCCEEEEEEEcCCCE--EEEEECCeE--EEecCEEEEee
Confidence 0012334455555555 79998885 88887543332 234444443 23489999999
Q ss_pred cCCcccc
Q 009785 220 GCFSNLR 226 (526)
Q Consensus 220 G~~S~vR 226 (526)
|......
T Consensus 347 G~~Pnt~ 353 (558)
T PLN02546 347 GRKPNTK 353 (558)
T ss_pred ccccCCC
Confidence 9887653
No 330
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.07 E-value=0.00093 Score=67.85 Aligned_cols=34 Identities=41% Similarity=0.479 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.+|+|||||++|+.+|..|++.|.+|+++|+.+.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5899999999999999999999999999999854
No 331
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.05 E-value=0.00077 Score=73.95 Aligned_cols=36 Identities=39% Similarity=0.564 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
..+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 468999999999999999999999999999998753
No 332
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.01 E-value=0.0057 Score=62.10 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCe-EEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~-V~l~Er~~ 93 (526)
-.|+|||+|+.|+-+|..|.+.|.+ |+|++++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 3799999999999999999999997 99999863
No 333
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.01 E-value=0.0011 Score=67.01 Aligned_cols=42 Identities=33% Similarity=0.525 Sum_probs=35.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEecCCCCCCcccc
Q 009785 60 DADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVG 101 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G-~~V~l~Er~~~~~~~~~g 101 (526)
+..|+|||||.|||+||..|-++| .+|+|+|.......|...
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 458999999999999999999776 589999998877665543
No 334
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.00 E-value=0.00063 Score=70.68 Aligned_cols=57 Identities=32% Similarity=0.391 Sum_probs=43.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-cc-------eeeCcchHHHHHHcCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRI-VG-------ELLQPGGYLKLIELGL 117 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~-~g-------~~l~~~~~~~l~~lGl 117 (526)
-.|.||||||+||++|..|++.|++|+++|+.+...... .| ..+..+-++.|++.|+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv 188 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGV 188 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCe
Confidence 589999999999999999999999999999997654321 11 1123355566777774
No 335
>PLN03000 amine oxidase
Probab=96.96 E-value=0.0011 Score=73.28 Aligned_cols=38 Identities=34% Similarity=0.508 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~ 97 (526)
..+|+|||||++|+++|..|++.|++|+|+|++.....
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 47899999999999999999999999999999876544
No 336
>PRK12831 putative oxidoreductase; Provisional
Probab=96.95 E-value=0.0084 Score=63.22 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
-+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999999863
No 337
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.91 E-value=0.018 Score=56.10 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+||.+|||||..|+++|...+.+|.+|.|+|-.-
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 7999999999999999999999999999999874
No 338
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.87 E-value=0.015 Score=63.50 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 379999999999999999999999999999985
No 339
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.85 E-value=0.012 Score=61.25 Aligned_cols=91 Identities=24% Similarity=0.316 Sum_probs=62.6
Q ss_pred cEEEECCCHHHHHHHHHHHh--------------CCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccce
Q 009785 62 DVIVVGAGVAGAALANTLAK--------------DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQ 127 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~--------------~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~ 127 (526)
.|+|||||++|+-+|..|+. .|.+|+|+|+.+..-..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~----------------------------- 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS----------------------------- 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence 79999999999999999875 47889999987421000
Q ss_pred eeeeeEEEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCc
Q 009785 128 RVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGE 206 (526)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~ 206 (526)
....+.+.+.+.+++. +|+++.++ ++++.. +. |+ .++|+
T Consensus 226 --------------------------------~~~~~~~~~~~~L~~~-gV~v~~~~~v~~v~~--~~---v~--~~~g~ 265 (424)
T PTZ00318 226 --------------------------------FDQALRKYGQRRLRRL-GVDIRTKTAVKEVLD--KE---VV--LKDGE 265 (424)
T ss_pred --------------------------------CCHHHHHHHHHHHHHC-CCEEEeCCeEEEEeC--CE---EE--ECCCC
Confidence 0012344555555565 79998774 887753 22 33 45676
Q ss_pred EEEEEcCeEEEeecCCc
Q 009785 207 ELTAYAPLTIVCDGCFS 223 (526)
Q Consensus 207 ~~~i~a~~vV~ADG~~S 223 (526)
++.+|++|.|.|...
T Consensus 266 --~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 266 --VIPTGLVVWSTGVGP 280 (424)
T ss_pred --EEEccEEEEccCCCC
Confidence 467999999999644
No 340
>PLN02976 amine oxidase
Probab=96.79 E-value=0.0017 Score=74.63 Aligned_cols=37 Identities=38% Similarity=0.479 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEP 96 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~ 96 (526)
..+|+|||||++|+++|+.|++.|++|+|+|++....
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 5799999999999999999999999999999986554
No 341
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.72 E-value=0.015 Score=62.83 Aligned_cols=33 Identities=39% Similarity=0.510 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
-+|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 479999999999999999999999999999874
No 342
>PRK13984 putative oxidoreductase; Provisional
Probab=96.70 E-value=0.0022 Score=70.10 Aligned_cols=37 Identities=35% Similarity=0.348 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
...+|+|||+|++|+++|..|+++|++|+|+|+.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3468999999999999999999999999999998653
No 343
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.65 E-value=0.0097 Score=60.54 Aligned_cols=51 Identities=27% Similarity=0.332 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCc
Q 009785 164 FVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223 (526)
Q Consensus 164 l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S 223 (526)
+.....+.+++. ||++..++ |+++..+ +|++ ++|+. +|.++.+|=|.|...
T Consensus 211 l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~-----~v~~--~~g~~-~I~~~tvvWaaGv~a 262 (405)
T COG1252 211 LSKYAERALEKL-GVEVLLGTPVTEVTPD-----GVTL--KDGEE-EIPADTVVWAAGVRA 262 (405)
T ss_pred HHHHHHHHHHHC-CCEEEcCCceEEECCC-----cEEE--ccCCe-eEecCEEEEcCCCcC
Confidence 444455555566 89999886 8888654 3444 34443 588999999999764
No 344
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.50 E-value=0.028 Score=64.86 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=67.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCe
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 139 (526)
-+|+|||+|+.|+-+|..|++.|. .|+|+|+.+..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------------------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------------------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------------
Confidence 479999999999999999999995 57899876310
Q ss_pred eeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEe
Q 009785 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVC 218 (526)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~A 218 (526)
...+.+.+++. ++.++.++ ++++..+ +.+.+|++...+|+..++.+|.|+.+
T Consensus 354 -------------------------~~~l~~~L~~~-GV~i~~~~~v~~i~g~-~~v~~V~l~~~~g~~~~i~~D~V~va 406 (985)
T TIGR01372 354 -------------------------SPEARAEAREL-GIEVLTGHVVAATEGG-KRVSGVAVARNGGAGQRLEADALAVS 406 (985)
T ss_pred -------------------------hHHHHHHHHHc-CCEEEcCCeEEEEecC-CcEEEEEEEecCCceEEEECCEEEEc
Confidence 00022334444 78888885 7777543 45666777644455557889999999
Q ss_pred ecCCccc
Q 009785 219 DGCFSNL 225 (526)
Q Consensus 219 DG~~S~v 225 (526)
-|.....
T Consensus 407 ~G~~Pnt 413 (985)
T TIGR01372 407 GGWTPVV 413 (985)
T ss_pred CCcCchh
Confidence 9987654
No 345
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.50 E-value=0.0033 Score=63.15 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCccccccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSL 229 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~vR~~l 229 (526)
.+...+.+.+++.++......+|.++.-+++.++||.+ +||.+ ++++.||-=.+.+-+.-+.+
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L--~dG~e--v~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRL--ADGTE--VRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEe--cCCcE--EEeeeeecCCchHHHHHHhC
Confidence 45667788888885444444479999988898888875 56764 66898887777776654444
No 346
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.43 E-value=0.011 Score=62.40 Aligned_cols=39 Identities=33% Similarity=0.418 Sum_probs=34.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCC
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKD-GRRVHVIERDLSE 95 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~-G~~V~l~Er~~~~ 95 (526)
...+||.||||||-||+.+|..|++. ..+|+|+|+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34579999999999999999999986 5899999998654
No 347
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.40 E-value=0.033 Score=56.83 Aligned_cols=101 Identities=27% Similarity=0.312 Sum_probs=71.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCe
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGN 139 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 139 (526)
.-.|++||+|-.|+-+|..|...+.+|+++++.+.+-.+-.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf--------------------------------------- 253 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLF--------------------------------------- 253 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhh---------------------------------------
Confidence 45699999999999999999999999999999853211100
Q ss_pred eeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEEcCeEEE
Q 009785 140 RTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEK-GTIKGVQYKTKAGEELTAYAPLTIV 217 (526)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~-~~v~gv~v~~~~G~~~~i~a~~vV~ 217 (526)
-..+-+...+..++. +++++.++ +.+++.+. +++. .+...+|. ++.||+||.
T Consensus 254 ---------------------~~~i~~~~~~y~e~k-gVk~~~~t~~s~l~~~~~Gev~--~V~l~dg~--~l~adlvv~ 307 (478)
T KOG1336|consen 254 ---------------------GPSIGQFYEDYYENK-GVKFYLGTVVSSLEGNSDGEVS--EVKLKDGK--TLEADLVVV 307 (478)
T ss_pred ---------------------hHHHHHHHHHHHHhc-CeEEEEecceeecccCCCCcEE--EEEeccCC--EeccCeEEE
Confidence 001233334444444 89999997 78887554 5554 44566776 477999999
Q ss_pred eecCCccc
Q 009785 218 CDGCFSNL 225 (526)
Q Consensus 218 ADG~~S~v 225 (526)
+.|+.+..
T Consensus 308 GiG~~p~t 315 (478)
T KOG1336|consen 308 GIGIKPNT 315 (478)
T ss_pred eecccccc
Confidence 99987653
No 348
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.40 E-value=0.033 Score=62.51 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCe-EEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~-V~l~Er~~ 93 (526)
-+|+|||||.+|+-+|..+.+.|.+ |+|++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999997 99999874
No 349
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0049 Score=60.68 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAK--DGRRVHVIERDLSEP 96 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~--~G~~V~l~Er~~~~~ 96 (526)
.+.|+|||+||||+.+|..|-+ .+.+|.|+|+.+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 3589999999999999998877 369999999998654
No 350
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.30 E-value=0.032 Score=57.61 Aligned_cols=36 Identities=31% Similarity=0.464 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKD----GRRVHVIERDLSEP 96 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~----G~~V~l~Er~~~~~ 96 (526)
.++=|||+|+|+|++|..|-|. |-+|+|+|+...+.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G 42 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG 42 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence 4678999999999999999886 46899999987543
No 351
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.24 E-value=0.21 Score=51.22 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=46.6
Q ss_pred ceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 157 RGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 157 ~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
..++...+...|.+.+.+ +++++.++ |++++.+++. +.+++.+|+. ++||.||.|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~~~~---~~v~t~~g~~--~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI--RLTLHFNTEITSLERDGEG---WQLLDANGEV--IAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC--CcEEEeCCEEEEEEEcCCe---EEEEeCCCCE--EEcCEEEEcCCcccc
Confidence 355667888999988876 68888774 9999876664 4455667753 579999999999984
No 352
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.11 E-value=0.051 Score=60.01 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
-+|+|||||..|+-+|..+.+.|. +|++++++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 479999999999999999999996 699988873
No 353
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.05 E-value=0.072 Score=60.90 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
-+|+|||||.+|+-+|..+.+.|.+|+++.++.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 479999999999999999999999999998873
No 354
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.00 E-value=0.057 Score=54.06 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=84.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEecCCCCCCcccceeeCcchHH--HHHHcCCcchhhcccceeeeeeEE
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLSEPDRIVGELLQPGGYL--KLIELGLEDCVEQIDAQRVFGYAL 134 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G-~~V~l~Er~~~~~~~~~g~~l~~~~~~--~l~~lGl~~~l~~~~~~~~~~~~~ 134 (526)
+..+|++.||-||.-|++|+.|..++ .+++.+||.+....++ |..+....++ .++. .+.- ..+...+.+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHp-GmllegstlQv~FlkD-----LVTl--~~PTs~ySF 74 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHP-GMLLEGSTLQVPFLKD-----LVTL--VDPTSPYSF 74 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCC-CcccCCccccccchhh-----hccc--cCCCCchHH
Confidence 44699999999999999999999876 7899999998765543 2222222221 1111 1110 011111111
Q ss_pred E----ECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEeCCCcEE
Q 009785 135 F----KDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLE-EKGTIKGVQYKTKAGEEL 208 (526)
Q Consensus 135 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~-~~~~v~gv~v~~~~G~~~ 208 (526)
. ..++. ..|- ......+.|.++.+.+.=.+...+ .+++++ |+++.. +.+.....-+.+.++.
T Consensus 75 LNYL~~h~RL--y~Fl------~~e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~-- 142 (436)
T COG3486 75 LNYLHEHGRL--YEFL------NYETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDISSLDGDAVVRLFVVTANGT-- 142 (436)
T ss_pred HHHHHHcchH--hhhh------hhhcccccHHHHHHHHHHHHhhCC--ccccCCeeccccccCCcceeEEEEEcCCCc--
Confidence 0 00100 0000 011224578888888887777764 566775 887643 2233332334555665
Q ss_pred EEEcCeEEEeecCCccc
Q 009785 209 TAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 209 ~i~a~~vV~ADG~~S~v 225 (526)
..+|+-+|...|..-.+
T Consensus 143 ~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 143 VYRARNLVLGVGTQPYI 159 (436)
T ss_pred EEEeeeEEEccCCCcCC
Confidence 46699999999976544
No 355
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.97 E-value=0.01 Score=65.65 Aligned_cols=35 Identities=40% Similarity=0.556 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
...|.|||.||+||++|-.|-+.|+.|+|+||...
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 36899999999999999999999999999999864
No 356
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.89 E-value=0.087 Score=55.64 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
-.|+|||+|..|+-+|..+.+.|. +|+|++|++
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 479999999999999999999995 799999874
No 357
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.14 Score=50.12 Aligned_cols=89 Identities=27% Similarity=0.366 Sum_probs=67.8
Q ss_pred CCCCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeE
Q 009785 54 NGECPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYA 133 (526)
Q Consensus 54 ~~~~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 133 (526)
....-+.-||+|||||-+|.-+|+.|+--=-.|+|+|=.++.
T Consensus 348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL-------------------------------------- 389 (520)
T COG3634 348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL-------------------------------------- 389 (520)
T ss_pred CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh--------------------------------------
Confidence 333344569999999999999999998655689999876420
Q ss_pred EEECCeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC-CCcEEE
Q 009785 134 LFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTK-AGEELT 209 (526)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~-~G~~~~ 209 (526)
+-++.|.+++.+.+++++..+. -+++.-+.++|+|.++++. +|+...
T Consensus 390 -----------------------------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~ 438 (520)
T COG3634 390 -----------------------------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHH 438 (520)
T ss_pred -----------------------------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeE
Confidence 1356777888888999999885 7788778789999999874 555443
No 358
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.021 Score=53.90 Aligned_cols=58 Identities=28% Similarity=0.457 Sum_probs=43.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc-----cc--ceeeCcchHHHHHHcCCcc
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDR-----IV--GELLQPGGYLKLIELGLED 119 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~-----~~--g~~l~~~~~~~l~~lGl~~ 119 (526)
+++|||+|..|.+.|..|.+.|.+|+++|++++.-.+ .. .......-...|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCc
Confidence 6899999999999999999999999999998653221 11 1223344457788888863
No 359
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.67 E-value=0.21 Score=52.74 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcC--------CCeEEEece-EEEEEe--e-CCeEEEEEEEe---------------CCCcEEEEEcCeE
Q 009785 163 RFVQRLREKAASL--------PNVRLEQGT-VTSLLE--E-KGTIKGVQYKT---------------KAGEELTAYAPLT 215 (526)
Q Consensus 163 ~l~~~L~~~a~~~--------~~v~i~~~~-v~~l~~--~-~~~v~gv~v~~---------------~~G~~~~i~a~~v 215 (526)
+..+.|.+.+.+. .++.+++.. -+++.. + +++|.++++.. .+|++.++.+|.|
T Consensus 267 r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~V 346 (491)
T PLN02852 267 RVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLV 346 (491)
T ss_pred HHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEE
Confidence 3556666654332 257888774 677763 2 35788887752 1456667889999
Q ss_pred EEeecCCc
Q 009785 216 IVCDGCFS 223 (526)
Q Consensus 216 V~ADG~~S 223 (526)
|.|=|..|
T Consensus 347 i~aIG~~~ 354 (491)
T PLN02852 347 LKSIGYKS 354 (491)
T ss_pred EEeecCCC
Confidence 98888664
No 360
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.14 Score=50.64 Aligned_cols=92 Identities=24% Similarity=0.285 Sum_probs=67.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-+|+|||||-+..-.|+.|++.+-+|+++=|++...
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-------------------------------------------- 179 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-------------------------------------------- 179 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC--------------------------------------------
Confidence 499999999999999999999999999998884210
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEee
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCD 219 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~AD 219 (526)
-...+.+.+.+.+++.+++++ +.++.-++ +.+|++++..|++.++..|-+..+-
T Consensus 180 -----------------------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~i 234 (305)
T COG0492 180 -----------------------AEEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAI 234 (305)
T ss_pred -----------------------cCHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEec
Confidence 023444555555578888885 88887655 6678887755665566666666666
Q ss_pred cC
Q 009785 220 GC 221 (526)
Q Consensus 220 G~ 221 (526)
|.
T Consensus 235 G~ 236 (305)
T COG0492 235 GH 236 (305)
T ss_pred CC
Confidence 54
No 361
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.59 E-value=0.014 Score=60.21 Aligned_cols=38 Identities=32% Similarity=0.544 Sum_probs=29.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
|+.+|||||+|-|..-+.+|.+|++.|.+|+.+||++.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~y 38 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDY 38 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCC
Confidence 35679999999999999999999999999999999965
No 362
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.55 E-value=0.015 Score=51.47 Aligned_cols=32 Identities=44% Similarity=0.616 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|.|+|||..|.++|..|+++|.+|.|+.|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999984
No 363
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.50 E-value=0.15 Score=51.95 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCc
Q 009785 165 VQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223 (526)
Q Consensus 165 ~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S 223 (526)
...+.+.+++. +++++.++ ++++.. + .+. ..+|+ ++.+|.+|.|.|...
T Consensus 194 ~~~~~~~l~~~-gV~v~~~~~v~~i~~--~---~v~--~~~g~--~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 194 RRLVLRLLARR-GIEVHEGAPVTRGPD--G---ALI--LADGR--TLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHC-CCEEEeCCeeEEEcC--C---eEE--eCCCC--EEecCEEEEccCCCh
Confidence 34445555555 79998885 777642 2 233 34565 467999999999654
No 364
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.43 E-value=0.13 Score=56.77 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
.-.|+|||||..|+-+|..|.+.|. +|+|++++.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3579999999999999999999997 599998874
No 365
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.31 E-value=0.024 Score=51.49 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|.|||+|..|...|..+++.|++|+++|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 38999999999999999999999999999985
No 366
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.18 E-value=0.023 Score=54.78 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=29.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhC-CC-eEEEEecCC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKD-GR-RVHVIERDL 93 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~-G~-~V~l~Er~~ 93 (526)
..++.|+|||||-+|++.|..+.+. |. +|.|+|...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 4479999999999999999998764 43 788998764
No 367
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.09 E-value=0.2 Score=57.90 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=28.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCe-EEEEecC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERD 92 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~-V~l~Er~ 92 (526)
-+|+|||||.+|+-+|..+.+.|.+ |+++.|+
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4799999999999999999999974 7777765
No 368
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=94.97 E-value=0.085 Score=53.09 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=31.8
Q ss_pred CCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCc
Q 009785 176 PNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223 (526)
Q Consensus 176 ~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S 223 (526)
.++.+..++ |.++... .+.+++.+|+..+|..-++|-++|...
T Consensus 286 ~~I~~~~~t~Vk~V~~~-----~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVTEK-----TIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred ccceeecccEEEeecCc-----EEEEEcCCCceeeecceEEEecCCCCC
Confidence 378998886 6666432 245556688888899999999999754
No 369
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.94 E-value=0.044 Score=58.14 Aligned_cols=33 Identities=39% Similarity=0.551 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
-.|+|||+|++|+++|..|+++|.+|+++|+++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 379999999999999999999999999999874
No 370
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.90 E-value=0.067 Score=57.49 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=65.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCeee
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT 141 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 141 (526)
..+|||||.-|+-+|..|.+.|.+|.|++-.+. .|+ ..++.
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~-------------lMe--------rQLD~------------------ 187 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT-------------LME--------RQLDR------------------ 187 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecch-------------HHH--------Hhhhh------------------
Confidence 379999999999999999999999999986631 111 00100
Q ss_pred eecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeec
Q 009785 142 QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDG 220 (526)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG 220 (526)
.--..|++.+.+. +++++.++ .+++.. .+.+.+ ++++||+. +.||+||-|+|
T Consensus 188 ---------------------~ag~lL~~~le~~-Gi~~~l~~~t~ei~g-~~~~~~--vr~~DG~~--i~ad~VV~a~G 240 (793)
T COG1251 188 ---------------------TAGRLLRRKLEDL-GIKVLLEKNTEEIVG-EDKVEG--VRFADGTE--IPADLVVMAVG 240 (793)
T ss_pred ---------------------HHHHHHHHHHHhh-cceeecccchhhhhc-Ccceee--EeecCCCc--ccceeEEEecc
Confidence 0123445555555 78887775 444444 444444 45677874 66999999999
Q ss_pred CCcc
Q 009785 221 CFSN 224 (526)
Q Consensus 221 ~~S~ 224 (526)
.+-.
T Consensus 241 IrPn 244 (793)
T COG1251 241 IRPN 244 (793)
T ss_pred cccc
Confidence 7654
No 371
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.89 E-value=0.12 Score=56.04 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEeecCCccc
Q 009785 163 RFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVCDGCFSNL 225 (526)
Q Consensus 163 ~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~ADG~~S~v 225 (526)
.+...|.+.+.+. +++++.++ ++++..++++|.||.+.+ .+|+...++|+.||.|+|+++.+
T Consensus 120 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 120 AILHTLYQQNLKA-DTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHhC-CCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 5788888888765 78888885 999998788999998854 57887789999999999999864
No 372
>PRK13984 putative oxidoreductase; Provisional
Probab=94.85 E-value=0.32 Score=53.23 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=24.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC------eEEEE
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGR------RVHVI 89 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~------~V~l~ 89 (526)
-+|+|||||..|+-+|..|++.|. +|+++
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~ 453 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVT 453 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEe
Confidence 479999999999999999998753 56665
No 373
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.64 E-value=0.22 Score=51.54 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCC
Q 009785 164 FVQRLREKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCF 222 (526)
Q Consensus 164 l~~~L~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~ 222 (526)
+.+.|.+.+++. +++++.+ +|+++..+++++..+. ..+|+...+++|.||.|+|.+
T Consensus 261 L~~aL~~~l~~~-Gv~I~~g~~V~~v~~~~~~V~~v~--~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 261 LQNALRRAFERL-GGRIMPGDEVLGAEFEGGRVTAVW--TRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEE--eeCCceEEEECCEEEEeCCCc
Confidence 566777777766 6788877 5999987777655433 345655678899999999975
No 374
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.64 E-value=0.038 Score=58.26 Aligned_cols=33 Identities=36% Similarity=0.409 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.|+|||.|++|+++|..|.++|++|++.|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 489999999999999999999999999998854
No 375
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.54 E-value=0.058 Score=47.29 Aligned_cols=31 Identities=32% Similarity=0.656 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 63 VIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 63 VvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
|+|+|+|-.|+..|..|++.|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999883
No 376
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.50 E-value=0.56 Score=49.80 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=28.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC-CeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDG-RRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G-~~V~l~Er~~ 93 (526)
-.|+|||||..|+-+|..+.+.| .+|+++|+.+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 47999999999999988777777 4799998874
No 377
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.44 E-value=0.055 Score=57.10 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
-+|+|||||++|+.+|..|++.|.+|+|+|+.+..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 47999999999999999999999999999998643
No 378
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.39 E-value=0.044 Score=49.95 Aligned_cols=32 Identities=34% Similarity=0.550 Sum_probs=26.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|.|+|.|-.||.+|..|++.|++|+.+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 68999999999999999999999999999985
No 379
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.24 E-value=0.42 Score=52.67 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=29.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
-+|+|||+|..|+-+|..+.+.|. +|++++++.
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999998888995 799998873
No 380
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.18 E-value=0.053 Score=53.88 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999853
No 381
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.16 E-value=0.7 Score=52.92 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=29.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKD-GR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~-G~-~V~l~Er~~ 93 (526)
.-+|+|||||.+|+-+|..+.+. |. +|++++|+.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 34799999999999999998886 86 799999874
No 382
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.14 E-value=0.26 Score=50.51 Aligned_cols=33 Identities=30% Similarity=0.586 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--eEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~--~V~l~Er~ 92 (526)
...++|||||++|..|+..+.+.|. +.+++-+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~ 108 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE 108 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEecc
Confidence 3579999999999999999999885 56666544
No 383
>PRK06370 mercuric reductase; Validated
Probab=94.00 E-value=0.079 Score=55.96 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 4799999999999999999999999999999864
No 384
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.55 E-value=0.11 Score=51.08 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999884
No 385
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.54 E-value=0.09 Score=51.68 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 69999999999999999999999999999874
No 386
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.48 E-value=0.11 Score=51.69 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
..|+|||+|-.|...|..|++.|.+|+++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 579999999999999999999999999999873
No 387
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.47 E-value=0.11 Score=51.64 Aligned_cols=33 Identities=36% Similarity=0.461 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 579999999999999999999999999999963
No 388
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.43 E-value=0.078 Score=52.04 Aligned_cols=33 Identities=42% Similarity=0.493 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.|.|||+|..|...|..+++.|++|+++|++++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 699999999999999999999999999999864
No 389
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.87 Score=41.99 Aligned_cols=100 Identities=23% Similarity=0.262 Sum_probs=72.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEECCee
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNR 140 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 140 (526)
-..+|||||=+-+-=|++|.+.+.+|.++-|+...
T Consensus 158 k~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f--------------------------------------------- 192 (322)
T KOG0404|consen 158 KPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF--------------------------------------------- 192 (322)
T ss_pred CeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh---------------------------------------------
Confidence 46899999999999999999999999999887320
Q ss_pred eeecCCCcCCCCCcccceeechHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEEcCeEEEe
Q 009785 141 TQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKT-KAGEELTAYAPLTIVC 218 (526)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~-~~G~~~~i~a~~vV~A 218 (526)
+-...+.+++.+.|++++++++ +++..-+.+.+.++++++ ++|+...+..+-+.-+
T Consensus 193 ----------------------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~ 250 (322)
T KOG0404|consen 193 ----------------------RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFA 250 (322)
T ss_pred ----------------------hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEE
Confidence 1234566677888899999886 555555555566677765 5677666667767666
Q ss_pred ecCCcccccc
Q 009785 219 DGCFSNLRRS 228 (526)
Q Consensus 219 DG~~S~vR~~ 228 (526)
-| ||+--+.
T Consensus 251 IG-H~Pat~~ 259 (322)
T KOG0404|consen 251 IG-HSPATKF 259 (322)
T ss_pred ec-CCchhhH
Confidence 66 4443333
No 390
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.27 E-value=0.13 Score=47.44 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4679999999999999999999999 699999983
No 391
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.26 E-value=0.11 Score=51.78 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.|.|||+|..|...|..++..|++|+++|+++.
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999999853
No 392
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.19 E-value=1.2 Score=50.92 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhC-C-CeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKD-G-RRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~-G-~~V~l~Er~~ 93 (526)
-+|+|||||.+|+-+|..+.+. | .+|+++.|+.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999988887 5 4899999874
No 393
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.00 E-value=0.13 Score=50.66 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.|.|||+|..|...|..|++.|++|+++|++++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 599999999999999999999999999999853
No 394
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.00 E-value=0.16 Score=47.16 Aligned_cols=32 Identities=34% Similarity=0.492 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
-.|+|||||.+|..-+..|.+.|.+|+|+..+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 37999999999999999999999999999876
No 395
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.99 E-value=0.12 Score=51.11 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|.|||+|-.|...|..|++.|.+|++++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999863
No 396
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.99 E-value=0.12 Score=44.46 Aligned_cols=32 Identities=34% Similarity=0.435 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 63 VIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 63 VvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
++|+|||+.+.+++..++..|++|+|+|.+++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999865
No 397
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.97 E-value=0.16 Score=45.47 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
...|+|+|+|.+|..+|..|...|.+|+++|..+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3689999999999999999999999999999873
No 398
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.89 E-value=0.12 Score=50.90 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999985
No 399
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.87 E-value=0.11 Score=42.37 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
.-.|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 357999999999999999999999999999887
No 400
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.84 E-value=0.16 Score=44.88 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=28.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEec
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIER 91 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er 91 (526)
-.|+|||||.+|..-|..|.+.|.+|+|+..
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 4799999999999999999999999999953
No 401
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.83 E-value=0.15 Score=53.67 Aligned_cols=33 Identities=45% Similarity=0.614 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
-.|+|+|+|.+|+++|..|++.|++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999974
No 402
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.80 E-value=0.2 Score=41.65 Aligned_cols=32 Identities=38% Similarity=0.632 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 63 VIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 63 VvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
|+|+|.|..|..++..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999953
No 403
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.76 E-value=0.14 Score=50.72 Aligned_cols=30 Identities=37% Similarity=0.650 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIER 91 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er 91 (526)
+|+|+|+|..|.++|..|++.|.+|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999998
No 404
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=92.68 E-value=4.1 Score=41.96 Aligned_cols=53 Identities=23% Similarity=0.154 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCc
Q 009785 166 QRLREKAASLPNVRLEQGT-VTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFS 223 (526)
Q Consensus 166 ~~L~~~a~~~~~v~i~~~~-v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S 223 (526)
+.|.+.+++. +.+++.++ |+++..+++++. +.+. .+|+ ++.||.||.|.-...
T Consensus 201 ~~l~~~l~~~-g~~i~~~~~V~~i~~~~~~~~-~~~~-~~g~--~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 201 EPARRWLDSR-GGEVRLGTRVRSIEANAGGIR-ALVL-SGGE--TLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHc-CCEEEcCCeeeEEEEcCCcce-EEEe-cCCc--cccCCEEEEcCCHHH
Confidence 3356666565 56788885 999998777543 3333 3454 467999999876543
No 405
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.46 E-value=0.16 Score=46.79 Aligned_cols=34 Identities=35% Similarity=0.581 Sum_probs=29.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.-+|+|||+|.++.-+|..|++.|.+|+++=|++
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4689999999999999999999999999999885
No 406
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.37 E-value=0.15 Score=49.96 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 599999999999999999999999999998853
No 407
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.36 E-value=0.26 Score=42.39 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe-EEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~-V~l~Er~~ 93 (526)
.-.|+|+|+|-+|-+++..|...|.+ |+|+-|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 45799999999999999999999987 99999873
No 408
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.24 E-value=0.16 Score=53.67 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.-.|+|+|+|++|+.++..+...|.+|.++|+++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999999999999999999999884
No 409
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.23 E-value=0.23 Score=47.90 Aligned_cols=34 Identities=38% Similarity=0.543 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|.+|..+|..|++.|+ +++|+|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3579999999999999999999995 899999884
No 410
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.20 E-value=0.2 Score=49.70 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G--~~V~l~Er~~~ 94 (526)
+|.|||+|.+|+++|+.|++.| ..+.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 5999999999999999999999 47999999753
No 411
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.13 E-value=0.22 Score=50.83 Aligned_cols=33 Identities=27% Similarity=0.538 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.+|+|+|+|.+|+.+|..|.+.|.+|+++|+++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 569999999999999999999999999999874
No 412
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.10 E-value=0.21 Score=42.87 Aligned_cols=34 Identities=29% Similarity=0.694 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~~ 94 (526)
..|+|+|+|-.|...|..|++.|+ +++|+|.+.-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 579999999999999999999998 7999999853
No 413
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.04 E-value=0.2 Score=51.48 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.-.|+|+|+|+.|+.+|..++..|.+|+++|+++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3479999999999999999999999999999875
No 414
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.00 E-value=0.43 Score=51.66 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
+-+|+|+|+|..|..+|..|.++|++|+++|++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 35799999999999999999999999999999853
No 415
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.97 E-value=0.26 Score=45.57 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
-.|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 47999999999999999999999999999764
No 416
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.82 E-value=0.26 Score=49.39 Aligned_cols=33 Identities=39% Similarity=0.435 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
..|.|||+|..|.+.|..|++.|++|++++|++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999974
No 417
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=91.79 E-value=2.3 Score=43.16 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcccceeeCcchHHHHHHcCCcchhhcccceeeeeeEEEEC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKD 137 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~~~~g~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 137 (526)
.++..|||+|.|=+|.++.-.|-..-++|+|+..+...- +.| .
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFl-------FTP-------------L----------------- 95 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFL-------FTP-------------L----------------- 95 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceE-------Eee-------------c-----------------
Confidence 345789999999999999888888889999997653100 000 0
Q ss_pred CeeeeecCCCcCCCCCcccceeechHHHHHHHHHHHcC-CCeEEEeceEEEEEeeCCeEEEEEEEeCCC--cEEEEEcCe
Q 009785 138 GNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASL-PNVRLEQGTVTSLLEEKGTIKGVQYKTKAG--EELTAYAPL 214 (526)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~-~~v~i~~~~v~~l~~~~~~v~gv~v~~~~G--~~~~i~a~~ 214 (526)
.| ..+.| .++-..+.+-.+..++.. +++.+++...+++..+...|. ++..++++ .+..+..||
T Consensus 96 -------Lp-----S~~vG-Tve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~-~~s~t~~~~~~e~~i~YDy 161 (491)
T KOG2495|consen 96 -------LP-----STTVG-TVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVH-CRSLTADSSDKEFVIGYDY 161 (491)
T ss_pred -------cC-----Ccccc-ceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEE-EeeeccCCCcceeeecccE
Confidence 00 00000 112222334344434333 367777777888877666543 33333333 446788999
Q ss_pred EEEeecCCccc
Q 009785 215 TIVCDGCFSNL 225 (526)
Q Consensus 215 vV~ADG~~S~v 225 (526)
+|.|.|+....
T Consensus 162 LViA~GA~~~T 172 (491)
T KOG2495|consen 162 LVIAVGAEPNT 172 (491)
T ss_pred EEEeccCCCCC
Confidence 99999998864
No 418
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.72 E-value=0.28 Score=48.84 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
..|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999999874
No 419
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.70 E-value=0.26 Score=49.54 Aligned_cols=34 Identities=38% Similarity=0.701 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3579999999999999999999998 899999985
No 420
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.67 E-value=0.22 Score=50.17 Aligned_cols=32 Identities=41% Similarity=0.590 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
.+|.|||+|..|...|..|++.|++|++++|+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 36999999999999999999999999999985
No 421
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.53 E-value=0.22 Score=51.71 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
..|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 422
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.36 E-value=0.27 Score=49.26 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+|.|||+|..|.+.|..|++.|.+|.++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999974
No 423
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.26 E-value=0.34 Score=44.83 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|..|..+|..|++.|+ +++++|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 4689999999999999999999998 899999884
No 424
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.24 E-value=0.33 Score=48.10 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
..|.|||+|..|+..|+.|+.+|. +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 369999999999999999999887 899999853
No 425
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.22 E-value=0.37 Score=48.10 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~~ 94 (526)
...|.|||+|-.|.+.|+.++..|+ +++|+|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3579999999999999999999996 9999999864
No 426
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.16 E-value=0.33 Score=48.79 Aligned_cols=34 Identities=35% Similarity=0.727 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4689999999999999999999999 899999984
No 427
>PRK04148 hypothetical protein; Provisional
Probab=91.12 E-value=0.23 Score=42.30 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
..|++||.| .|...|..|++.|.+|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 469999999 99999999999999999999885
No 428
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.11 E-value=0.27 Score=49.32 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
+|.|+|.|-+||+.|..|++.|++|+.+|.++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 689999999999999999999999999999853
No 429
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.01 E-value=0.36 Score=47.60 Aligned_cols=32 Identities=38% Similarity=0.518 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|.|||+|..|...|..|++.|++|+++|+++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999885
No 430
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.97 E-value=0.43 Score=41.35 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=29.2
Q ss_pred cEEEECC-CHHHHHHHHHHHhCCC--eEEEEecCC
Q 009785 62 DVIVVGA-GVAGAALANTLAKDGR--RVHVIERDL 93 (526)
Q Consensus 62 dVvIVGa-G~aGl~~A~~La~~G~--~V~l~Er~~ 93 (526)
+|.|||+ |..|.++|+.|...++ ++.|+|++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 6999999 9999999999999885 699999984
No 431
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.97 E-value=0.4 Score=42.87 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=30.2
Q ss_pred CCcEEEECCCH-HHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGV-AGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~-aGl~~A~~La~~G~~V~l~Er~ 92 (526)
...|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46899999996 6999999999999999999987
No 432
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.84 E-value=0.38 Score=43.35 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
.|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 599999984
No 433
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.79 E-value=0.42 Score=45.64 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 59 FDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 59 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
....++|+|||+.+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457999999999999999999999999999997754
No 434
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.72 E-value=0.4 Score=45.68 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 4689999999999999999999997 789999884
No 435
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.71 E-value=0.4 Score=47.59 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.+|.|||+|-.|.+.|..|++.|++|.+++|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 579999999999999999999999999999975
No 436
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=90.50 E-value=0.92 Score=45.66 Aligned_cols=50 Identities=24% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEEcCeEEEeecCCcc
Q 009785 169 REKAASLPNVRLEQG-TVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSN 224 (526)
Q Consensus 169 ~~~a~~~~~v~i~~~-~v~~l~~~~~~v~gv~v~~~~G~~~~i~a~~vV~ADG~~S~ 224 (526)
.+.+++ +||.++.+ .|.++.....+ +.++..||.+ ++.|+||.|.|.--+
T Consensus 400 ~ekir~-~GV~V~pna~v~sv~~~~~n---l~lkL~dG~~--l~tD~vVvavG~ePN 450 (659)
T KOG1346|consen 400 IEKIRK-GGVDVRPNAKVESVRKCCKN---LVLKLSDGSE--LRTDLVVVAVGEEPN 450 (659)
T ss_pred HHHHHh-cCceeccchhhhhhhhhccc---eEEEecCCCe--eeeeeEEEEecCCCc
Confidence 334444 47888877 47777666553 5577888974 679999999996543
No 437
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.47 E-value=0.27 Score=51.01 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
+|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999999854
No 438
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.44 E-value=0.44 Score=44.44 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe-EEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~-V~l~Er~~ 93 (526)
+..|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 46899999999999999999999985 99999984
No 439
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=90.15 E-value=1.2 Score=50.46 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=24.7
Q ss_pred CcEEEECCCHHHHHHHHHHHh---CCCeEEEEecC
Q 009785 61 ADVIVVGAGVAGAALANTLAK---DGRRVHVIERD 92 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~---~G~~V~l~Er~ 92 (526)
-+|+|||||.+|+=+|..+.+ .+..+.+.+..
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~ 585 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYI 585 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhh
Confidence 479999999999988886544 46677777664
No 440
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=0.5 Score=46.83 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
.|||+|+|-|+.=+.++..|+..|.+|+.+||++.-
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~Y 41 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYY 41 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCcc
Confidence 599999999999999999999999999999999753
No 441
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=89.95 E-value=0.42 Score=50.83 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.|.|||+|..|...|..|+++|++|+++|++++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 699999999999999999999999999999753
No 442
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.89 E-value=0.55 Score=40.71 Aligned_cols=32 Identities=34% Similarity=0.598 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
.|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999998 799999885
No 443
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=89.86 E-value=0.38 Score=44.25 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
...|.|||||..|.-.|.-.+..|++|.|+|++..
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 45799999999999999999999999999999853
No 444
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.85 E-value=0.46 Score=47.49 Aligned_cols=32 Identities=44% Similarity=0.632 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+|.|||+|..|...|..|++.|++|.+++|++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999974
No 445
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=89.84 E-value=0.44 Score=46.66 Aligned_cols=33 Identities=39% Similarity=0.561 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
..|+|+|+|-+|.++|..|++.|. +|+|++|+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999998 799999873
No 446
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.81 E-value=0.42 Score=46.71 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|.|||.|..|.+.|..|+++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999874
No 447
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.80 E-value=0.51 Score=45.12 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999997 799999884
No 448
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.76 E-value=0.5 Score=46.86 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGR-RVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~~ 94 (526)
..|.|||+|..|.+.|..++..|+ .|.|+|.+.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 379999999999999999999876 9999999643
No 449
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.71 E-value=0.62 Score=46.35 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~--~V~l~Er~~ 93 (526)
...|.|||+|-+|.++|+.|+..|+ .+.|+|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3589999999999999999999997 799999864
No 450
>PRK08328 hypothetical protein; Provisional
Probab=89.67 E-value=0.54 Score=44.51 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3579999999999999999999997 689998874
No 451
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.57 E-value=0.47 Score=48.67 Aligned_cols=35 Identities=34% Similarity=0.374 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.-.|+|+|.|+.|..+|..|+..|.+|+++|+++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 45799999999999999999999999999998863
No 452
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=89.31 E-value=1.6 Score=46.87 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
-+|+|||+|.+|.=.|..|++...+|.+.-|+.
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 479999999999999999999999999988874
No 453
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=89.12 E-value=0.58 Score=44.13 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRR---VHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~---V~l~Er~~ 93 (526)
..|+|+|+|-+|...|..|.+.|.+ +.|++|+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4799999999999999999999985 99999983
No 454
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.07 E-value=0.63 Score=43.98 Aligned_cols=34 Identities=38% Similarity=0.626 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|..|...|..|++.|+ +++|+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999998 789999874
No 455
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.04 E-value=0.57 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.588 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDG--RRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G--~~V~l~Er~~~ 94 (526)
.|.|||+|-+|.++|+.|+..| ..+.|+|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999999 47999999753
No 456
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.01 E-value=0.53 Score=49.64 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
.-+|+|||||..|+-+|..|++.|. +|++++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3589999999999999999999998 899999863
No 457
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.99 E-value=0.52 Score=46.61 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 63 VIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 63 VvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
|.|||+|-.|..+|..|+.+|+ +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999984
No 458
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.95 E-value=0.61 Score=49.59 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
..|.|||+|..|...|..|++.|++|+++|++++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999999854
No 459
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.90 E-value=0.56 Score=49.50 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
...|+|+|+|++|+.++..+...|.+|+++|++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3589999999999999999999999999999884
No 460
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.87 E-value=0.51 Score=47.82 Aligned_cols=32 Identities=34% Similarity=0.382 Sum_probs=27.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
.|+|+|+||.||.++..++..|. +|+++|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 69999999999999888888995 677777774
No 461
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.78 E-value=0.73 Score=45.75 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR--RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~--~V~l~Er~~ 93 (526)
+..|.|||+|-+|.++|+.|+..|. .++|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999999886 689999874
No 462
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=88.70 E-value=0.66 Score=44.09 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-----------CeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDG-----------RRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G-----------~~V~l~Er~~ 93 (526)
...|+|||+|-.|..++-.|++.| .+++|+|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 578999999999999999999974 3889999874
No 463
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.60 E-value=1.6 Score=47.66 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+.+|+|+|.|..|-..|..|.++|++++++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence 4579999999999999999999999999999985
No 464
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=88.49 E-value=0.29 Score=48.97 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=34.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Q 009785 58 PFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSE 95 (526)
Q Consensus 58 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~ 95 (526)
..+|||+|+|-|..=+.++..|+..|.+|+.+||++.-
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yY 39 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYY 39 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCC
Confidence 34699999999999999999999999999999999753
No 465
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.48 E-value=0.62 Score=43.71 Aligned_cols=32 Identities=41% Similarity=0.632 Sum_probs=29.3
Q ss_pred cEEEEC-CCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVG-AGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVG-aG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+|.||| +|..|.++|..|++.|.+|.++.|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998874
No 466
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.48 E-value=0.75 Score=40.89 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.+|-|||-|..|...|..|.++|++|.+++|++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 368999999999999999999999999999884
No 467
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.34 E-value=0.77 Score=43.39 Aligned_cols=34 Identities=38% Similarity=0.591 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4679999999999999999999998 799999884
No 468
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.29 E-value=0.76 Score=45.28 Aligned_cols=34 Identities=38% Similarity=0.497 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
...|+|+|.|.+|..+|..|.+.|.+|++++|++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3579999999999999999999999999999984
No 469
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.26 E-value=0.65 Score=47.12 Aligned_cols=34 Identities=32% Similarity=0.642 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC-CeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G-~~V~l~Er~~~ 94 (526)
.+|+|+|+|-.|.++|..|+++| .+|++.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 37999999999999999999999 89999999854
No 470
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.22 E-value=0.81 Score=45.66 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDG-RRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G-~~V~l~Er~~~ 94 (526)
...|.|||||-.|.++|+.|+..| .+++|+|.+..
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 458999999999999999999999 58999998753
No 471
>PRK08223 hypothetical protein; Validated
Probab=88.22 E-value=0.75 Score=44.72 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4689999999999999999999998 789999884
No 472
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.22 E-value=0.62 Score=48.91 Aligned_cols=32 Identities=34% Similarity=0.387 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|+|+|+|..|+++|..|++.|.+|++.|++.
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 58999999999999999999999999999764
No 473
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.21 E-value=0.62 Score=49.61 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.|.|||+|..|...|..|++.|++|+++|++++
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999999864
No 474
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.19 E-value=0.67 Score=47.85 Aligned_cols=35 Identities=37% Similarity=0.366 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.-.|+|+|.|..|..+|..|+..|.+|+++|+++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 45799999999999999999999999999998853
No 475
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=88.17 E-value=2.2 Score=43.79 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=26.4
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCeEEEEecCCC
Q 009785 63 VIVVGAGVAGAALANTLAKD--GRRVHVIERDLS 94 (526)
Q Consensus 63 VvIVGaG~aGl~~A~~La~~--G~~V~l~Er~~~ 94 (526)
++|||+|++|+++|..|.+. +.+++++.+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~ 34 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPK 34 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 58999999999999998885 457887777754
No 476
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.16 E-value=0.46 Score=45.99 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.-+|+|+|||.+|.-+|.-+.-.|.+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4689999999999999999999999999999984
No 477
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.15 E-value=0.63 Score=47.77 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.|.|||.|-.|+.+|..++. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999988885 999999999854
No 478
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.14 E-value=0.63 Score=48.95 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKD--GRRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~--G~~V~l~Er~~~ 94 (526)
++|.|||.|-+|+.+|..|+++ |++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 4699999999999999999998 488999998754
No 479
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.10 E-value=0.58 Score=52.11 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.|.|||||..|...|..+++.|++|+++|.+++
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999999854
No 480
>PRK10537 voltage-gated potassium channel; Provisional
Probab=88.01 E-value=1.1 Score=45.85 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
-.|+|+|.|..|...+..|.++|.+|+++|++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d 272 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPL 272 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence 47999999999999999999999999999976
No 481
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.98 E-value=0.6 Score=51.93 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.|.|||||..|...|..+++.|++|+++|.+++
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999999854
No 482
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=87.94 E-value=0.84 Score=42.08 Aligned_cols=34 Identities=32% Similarity=0.662 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4689999999999999999999998 599999884
No 483
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=87.81 E-value=0.7 Score=40.75 Aligned_cols=33 Identities=39% Similarity=0.536 Sum_probs=27.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
-.++|+|=|-.|..+|..|+..|.+|+|.|.+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 369999999999999999999999999999985
No 484
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.78 E-value=0.66 Score=49.29 Aligned_cols=32 Identities=44% Similarity=0.637 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
-.|+|+|.|.+|++++..|.++|.+|++.|++
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36999999999999999999999999999965
No 485
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.77 E-value=0.9 Score=41.64 Aligned_cols=32 Identities=38% Similarity=0.635 Sum_probs=29.5
Q ss_pred CcEEEECC-CHHHHHHHHHHHhCCCeEEEEecC
Q 009785 61 ADVIVVGA-GVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 61 ~dVvIVGa-G~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
..++|+|| |..|..+|..|+++|.+|+++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999997 999999999999999999999876
No 486
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.74 E-value=0.62 Score=48.97 Aligned_cols=33 Identities=39% Similarity=0.640 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 599999999999999999999999999999753
No 487
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.55 E-value=0.57 Score=46.95 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=36.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 009785 57 CPFDADVIVVGAGVAGAALANTLAKDGRRVHVIERDLSEPD 97 (526)
Q Consensus 57 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~~~~ 97 (526)
.++++||||||-|..-..+|.+.+|.|.+|+=+|+++.-++
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 45679999999999999999999999999999999975443
No 488
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=87.52 E-value=0.9 Score=41.85 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4679999999999999999999998 589999884
No 489
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.50 E-value=0.8 Score=48.05 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
..|+|+|.|.+|+++|..|+++|.+|++.|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3699999999999999999999999999998753
No 490
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.48 E-value=1.2 Score=41.13 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
..|+|+|.|-.|..+|..|.+.|.+|++.|++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999999999876
No 491
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=87.22 E-value=0.49 Score=44.71 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=25.8
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCeEEEEecCC
Q 009785 63 VIVVGAGVAGAALANTLAKD--GRRVHVIERDL 93 (526)
Q Consensus 63 VvIVGaG~aGl~~A~~La~~--G~~V~l~Er~~ 93 (526)
.+|||||+||.++|-.|+++ ..+++|+-..+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 58999999999999999986 45788776653
No 492
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.12 E-value=0.77 Score=48.39 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|+|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999875
No 493
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.02 E-value=0.75 Score=45.55 Aligned_cols=32 Identities=34% Similarity=0.643 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
.|.|+|+|-.|...|+.|++.|.+|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 58999999999999999999998888887774
No 494
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=86.77 E-value=1 Score=45.84 Aligned_cols=34 Identities=35% Similarity=0.597 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGR-RVHVIERDL 93 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~l~Er~~ 93 (526)
+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4689999999999999999999997 899999884
No 495
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=86.67 E-value=0.46 Score=40.27 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=28.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Q 009785 60 DADVIVVGAGVAGAALANTLAKDGRRVHVIERD 92 (526)
Q Consensus 60 ~~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~ 92 (526)
..+|.|||+|-+|.++|..|.+.|+.|.-+..+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 578999999999999999999999999877644
No 496
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=86.66 E-value=0.76 Score=45.20 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
+|.|||.|..|...|..|++.|++|++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 38899999999999999999999999999874
No 497
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=86.58 E-value=0.95 Score=44.39 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRRVHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~ 93 (526)
-.|+|+|.|..|.++|..|+..|.+|++++|+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999999999999999999999999999974
No 498
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=86.39 E-value=1 Score=44.31 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCe-EEEEecCC
Q 009785 61 ADVIVVGAGVAGAALANTLAKDGRR-VHVIERDL 93 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~G~~-V~l~Er~~ 93 (526)
-.|+|+|||-+|.++|..|++.|.+ |+|+.|+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4699999999999999999999986 99999874
No 499
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.29 E-value=0.81 Score=51.07 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Q 009785 62 DVIVVGAGVAGAALANTLAKDGRRVHVIERDLS 94 (526)
Q Consensus 62 dVvIVGaG~aGl~~A~~La~~G~~V~l~Er~~~ 94 (526)
.|.|||||..|...|..++..|++|+++|.+++
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 599999999999999999999999999999854
No 500
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.07 E-value=1.9 Score=33.69 Aligned_cols=31 Identities=39% Similarity=0.727 Sum_probs=28.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Q 009785 61 ADVIVVGAGVAGAALANTLAKD-GRRVHVIER 91 (526)
Q Consensus 61 ~dVvIVGaG~aGl~~A~~La~~-G~~V~l~Er 91 (526)
-.++|+|+|-+|..+|..|.+. +.++.+++|
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4699999999999999999998 678999988
Done!