Query 009787
Match_columns 525
No_of_seqs 375 out of 2210
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 17:19:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 1.4E-36 3E-41 323.4 15.0 320 163-506 107-446 (590)
2 cd04016 C2_Tollip C2 domain pr 99.8 2E-20 4.3E-25 161.4 15.1 111 13-124 1-120 (121)
3 KOG1030 Predicted Ca2+-depende 99.8 1.8E-19 3.9E-24 158.9 11.0 99 12-110 4-102 (168)
4 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.1E-18 2.3E-23 150.6 15.3 112 15-126 1-115 (116)
5 cd08682 C2_Rab11-FIP_classI C2 99.8 5.9E-19 1.3E-23 154.5 13.9 99 16-114 1-109 (126)
6 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.3E-18 2.8E-23 151.2 13.5 100 15-114 1-111 (126)
7 cd04042 C2A_MCTP_PRT C2 domain 99.8 3.6E-18 7.9E-23 148.4 15.1 111 15-125 1-119 (121)
8 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 5.8E-18 1.3E-22 146.9 14.1 109 16-124 2-120 (121)
9 cd08377 C2C_MCTP_PRT C2 domain 99.8 1E-17 2.2E-22 145.0 15.3 112 14-125 1-118 (119)
10 cd08681 C2_fungal_Inn1p-like C 99.8 4.5E-18 9.8E-23 147.1 13.0 110 14-124 1-117 (118)
11 cd04024 C2A_Synaptotagmin-like 99.8 7.6E-18 1.7E-22 147.7 14.1 112 14-125 1-128 (128)
12 cd08375 C2_Intersectin C2 doma 99.8 1.6E-17 3.6E-22 146.9 16.0 117 9-125 10-135 (136)
13 cd04022 C2A_MCTP_PRT_plant C2 99.8 7.9E-18 1.7E-22 147.5 13.7 111 15-125 1-125 (127)
14 cd08677 C2A_Synaptotagmin-13 C 99.8 7.4E-18 1.6E-22 143.3 11.7 100 10-112 10-118 (118)
15 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.2E-17 4.8E-22 148.4 15.1 112 15-126 1-132 (150)
16 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.2E-17 4.8E-22 143.3 14.4 111 14-125 1-121 (121)
17 cd08678 C2_C21orf25-like C2 do 99.7 2.2E-17 4.7E-22 144.6 14.4 109 16-126 1-120 (126)
18 cd04036 C2_cPLA2 C2 domain pre 99.7 2.2E-17 4.8E-22 143.0 13.6 111 15-126 1-118 (119)
19 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.8E-17 6E-22 142.8 14.2 109 16-124 2-120 (121)
20 cd04046 C2_Calpain C2 domain p 99.7 7.1E-17 1.5E-21 141.2 16.3 100 13-113 2-101 (126)
21 cd08381 C2B_PI3K_class_II C2 d 99.7 2.5E-17 5.5E-22 143.1 12.6 99 13-112 12-121 (122)
22 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 7.1E-17 1.5E-21 140.7 15.0 99 16-114 2-103 (123)
23 cd04027 C2B_Munc13 C2 domain s 99.7 5.9E-17 1.3E-21 141.9 14.2 110 15-124 2-124 (127)
24 cd08378 C2B_MCTP_PRT_plant C2 99.7 5.6E-17 1.2E-21 140.7 13.2 105 16-125 2-119 (121)
25 cd08395 C2C_Munc13 C2 domain t 99.7 5.9E-17 1.3E-21 139.5 12.7 99 15-114 1-112 (120)
26 cd04015 C2_plant_PLD C2 domain 99.7 1.4E-16 3.1E-21 144.6 15.8 112 13-125 6-157 (158)
27 cd04028 C2B_RIM1alpha C2 domai 99.7 6.8E-17 1.5E-21 143.7 13.3 103 13-115 28-139 (146)
28 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 9.9E-17 2.1E-21 141.7 13.2 100 15-114 1-115 (133)
29 cd08394 C2A_Munc13 C2 domain f 99.7 1.5E-16 3.3E-21 136.6 13.7 96 14-114 2-101 (127)
30 cd04014 C2_PKC_epsilon C2 doma 99.7 2.8E-16 6.1E-21 138.6 15.9 113 13-127 3-130 (132)
31 cd08393 C2A_SLP-1_2 C2 domain 99.7 9.4E-17 2E-21 140.2 12.2 104 10-113 11-125 (125)
32 cd04017 C2D_Ferlin C2 domain f 99.7 2.6E-16 5.7E-21 139.4 15.2 114 14-127 1-133 (135)
33 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.6E-16 3.4E-21 138.7 12.9 104 10-113 11-125 (125)
34 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.6E-16 3.5E-21 138.6 13.0 104 10-113 12-123 (124)
35 cd04043 C2_Munc13_fungal C2 do 99.7 4.4E-16 9.6E-21 136.2 15.3 113 14-127 1-122 (126)
36 cd04050 C2B_Synaptotagmin-like 99.7 1.8E-16 3.9E-21 134.1 12.2 98 15-115 1-103 (105)
37 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.6E-16 5.6E-21 137.3 13.3 103 11-113 13-123 (124)
38 cd08400 C2_Ras_p21A1 C2 domain 99.7 7.6E-16 1.7E-20 134.7 16.1 110 14-127 4-124 (126)
39 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.1E-16 4.5E-21 138.3 12.2 104 10-113 11-128 (128)
40 cd04031 C2A_RIM1alpha C2 domai 99.7 2.6E-16 5.7E-21 137.4 12.7 104 10-113 12-125 (125)
41 cd04039 C2_PSD C2 domain prese 99.7 2.7E-16 5.9E-21 133.4 11.9 89 14-102 1-95 (108)
42 cd04010 C2B_RasA3 C2 domain se 99.7 2.7E-16 5.9E-21 140.7 12.4 99 15-115 1-123 (148)
43 cd04041 C2A_fungal C2 domain f 99.7 1.6E-16 3.5E-21 135.8 10.4 99 14-113 1-107 (111)
44 cd08688 C2_KIAA0528-like C2 do 99.7 2.3E-16 5E-21 134.6 11.1 99 16-114 1-109 (110)
45 cd08680 C2_Kibra C2 domain fou 99.7 3.2E-16 7E-21 136.0 11.9 103 10-112 10-124 (124)
46 cd08382 C2_Smurf-like C2 domai 99.7 1.1E-15 2.3E-20 133.2 14.7 109 16-125 2-120 (123)
47 cd04045 C2C_Tricalbin-like C2 99.7 1E-15 2.2E-20 132.7 14.0 102 14-115 1-104 (120)
48 cd04044 C2A_Tricalbin-like C2 99.7 8.9E-16 1.9E-20 133.8 13.2 113 14-126 2-123 (124)
49 cd08386 C2A_Synaptotagmin-7 C2 99.7 1E-15 2.3E-20 133.6 13.6 105 10-114 12-125 (125)
50 cd08388 C2A_Synaptotagmin-4-11 99.7 9.2E-16 2E-20 134.4 13.2 105 10-114 12-128 (128)
51 cd08685 C2_RGS-like C2 domain 99.7 4.5E-16 9.8E-21 134.5 10.8 100 12-112 10-119 (119)
52 cd04049 C2_putative_Elicitor-r 99.7 1E-15 2.2E-20 133.5 12.8 102 14-115 1-109 (124)
53 cd04038 C2_ArfGAP C2 domain pr 99.7 1E-15 2.2E-20 136.5 12.5 88 14-102 2-89 (145)
54 cd04030 C2C_KIAA1228 C2 domain 99.7 1.2E-15 2.6E-20 133.6 12.8 104 10-113 12-127 (127)
55 cd08521 C2A_SLP C2 domain firs 99.7 1.3E-15 2.7E-20 132.7 12.5 102 11-112 11-123 (123)
56 cd08676 C2A_Munc13-like C2 dom 99.7 1.2E-15 2.5E-20 137.0 12.3 101 8-112 22-153 (153)
57 cd08384 C2B_Rabphilin_Doc2 C2 99.6 3.3E-16 7E-21 138.4 8.5 108 10-117 9-124 (133)
58 cd08390 C2A_Synaptotagmin-15-1 99.6 2.2E-15 4.7E-20 131.2 13.1 105 10-114 10-123 (123)
59 cd04051 C2_SRC2_like C2 domain 99.6 1.1E-15 2.3E-20 133.6 11.0 110 15-124 1-124 (125)
60 cd08389 C2A_Synaptotagmin-14_1 99.6 2.2E-15 4.8E-20 131.3 12.9 104 10-114 12-124 (124)
61 cd08406 C2B_Synaptotagmin-12 C 99.6 5E-16 1.1E-20 137.2 8.3 108 10-117 11-126 (136)
62 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.9E-15 4E-20 137.8 12.1 104 11-114 24-138 (162)
63 cd04032 C2_Perforin C2 domain 99.6 2.9E-15 6.3E-20 130.4 12.7 93 10-103 24-118 (127)
64 cd04011 C2B_Ferlin C2 domain s 99.6 2.5E-15 5.4E-20 128.4 12.1 99 12-114 2-110 (111)
65 KOG0696 Serine/threonine prote 99.6 1.3E-16 2.9E-21 157.7 4.2 103 12-114 178-288 (683)
66 cd04018 C2C_Ferlin C2 domain t 99.6 3.5E-15 7.6E-20 133.7 12.7 100 15-114 1-125 (151)
67 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.6E-15 3.5E-20 134.5 9.5 108 11-118 12-127 (136)
68 cd08373 C2A_Ferlin C2 domain f 99.6 1.7E-14 3.6E-19 126.4 15.0 93 20-114 2-99 (127)
69 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.1E-15 2.4E-20 135.5 7.5 107 9-115 10-124 (136)
70 cd04040 C2D_Tricalbin-like C2 99.6 8.1E-15 1.7E-19 126.0 12.5 102 16-117 1-106 (115)
71 cd08407 C2B_Synaptotagmin-13 C 99.6 1.8E-15 4E-20 133.5 8.5 105 10-114 11-125 (138)
72 cd08675 C2B_RasGAP C2 domain s 99.6 5.3E-15 1.2E-19 131.1 11.4 99 16-115 1-121 (137)
73 cd08383 C2A_RasGAP C2 domain ( 99.6 1.8E-14 4E-19 124.1 13.6 105 16-124 2-116 (117)
74 cd08405 C2B_Synaptotagmin-7 C2 99.6 3.3E-15 7.2E-20 132.5 8.6 109 10-118 11-127 (136)
75 cd08403 C2B_Synaptotagmin-3-5- 99.6 4.1E-15 9E-20 131.5 9.0 109 10-118 10-126 (134)
76 cd04009 C2B_Munc13-like C2 dom 99.6 1.3E-14 2.7E-19 128.2 11.4 92 12-103 14-117 (133)
77 cd04026 C2_PKC_alpha_gamma C2 99.6 1.6E-14 3.5E-19 127.2 11.8 105 14-118 13-126 (131)
78 cd08410 C2B_Synaptotagmin-17 C 99.6 5.6E-15 1.2E-19 130.8 8.9 109 10-118 10-127 (135)
79 cd08690 C2_Freud-1 C2 domain f 99.6 5.8E-14 1.3E-18 125.9 15.3 112 16-127 4-138 (155)
80 cd08408 C2B_Synaptotagmin-14_1 99.6 6.4E-15 1.4E-19 130.7 8.0 109 9-117 10-128 (138)
81 cd04037 C2E_Ferlin C2 domain f 99.6 3.8E-14 8.2E-19 123.6 11.8 89 15-103 1-92 (124)
82 cd08691 C2_NEDL1-like C2 domai 99.6 9.3E-14 2E-18 122.6 14.4 99 15-115 2-122 (137)
83 cd08692 C2B_Tac2-N C2 domain s 99.6 1.4E-14 3.1E-19 126.2 8.9 106 9-114 9-123 (135)
84 cd04048 C2A_Copine C2 domain f 99.6 2.4E-14 5.1E-19 124.1 10.3 96 19-114 5-114 (120)
85 cd04021 C2_E3_ubiquitin_ligase 99.5 9.4E-14 2E-18 121.2 13.8 98 15-114 3-108 (125)
86 cd00276 C2B_Synaptotagmin C2 d 99.5 1E-14 2.2E-19 128.9 7.7 108 11-118 11-126 (134)
87 cd04013 C2_SynGAP_like C2 doma 99.5 1.3E-13 2.9E-18 122.3 14.4 97 13-114 10-113 (146)
88 cd08686 C2_ABR C2 domain in th 99.5 7.1E-14 1.5E-18 118.6 11.4 81 16-102 1-93 (118)
89 cd04052 C2B_Tricalbin-like C2 99.5 1.4E-13 3E-18 117.6 12.4 96 31-127 9-110 (111)
90 KOG1011 Neurotransmitter relea 99.5 3E-14 6.4E-19 146.6 9.1 120 7-126 288-424 (1283)
91 cd04035 C2A_Rabphilin_Doc2 C2 99.5 2E-13 4.4E-18 118.8 13.0 102 10-112 11-121 (123)
92 cd08409 C2B_Synaptotagmin-15 C 99.5 4.3E-14 9.2E-19 125.4 8.4 105 10-115 11-125 (137)
93 KOG1032 Uncharacterized conser 99.5 2.5E-14 5.5E-19 153.4 7.0 480 2-506 85-581 (590)
94 PLN03008 Phospholipase D delta 99.5 2.3E-13 5E-18 147.6 14.0 118 13-131 13-182 (868)
95 cd04047 C2B_Copine C2 domain s 99.5 1.9E-13 4.2E-18 116.5 10.3 94 18-112 4-108 (110)
96 cd00275 C2_PLC_like C2 domain 99.5 1.1E-12 2.3E-17 114.9 14.8 102 14-117 2-113 (128)
97 KOG1028 Ca2+-dependent phospho 99.5 8.6E-13 1.9E-17 137.7 16.3 159 10-179 163-336 (421)
98 PF02893 GRAM: GRAM domain; I 99.5 9.7E-14 2.1E-18 107.8 6.0 61 164-224 2-64 (69)
99 PLN03200 cellulose synthase-in 99.5 2.2E-13 4.8E-18 160.6 11.6 113 11-126 1977-2100(2102)
100 smart00568 GRAM domain in gluc 99.3 2.6E-12 5.6E-17 97.2 6.7 55 170-224 1-56 (61)
101 PF00168 C2: C2 domain; Inter 99.3 8.5E-12 1.8E-16 100.3 9.7 81 16-96 1-85 (85)
102 KOG2059 Ras GTPase-activating 99.3 5.6E-12 1.2E-16 132.1 9.2 115 15-130 6-129 (800)
103 cd00030 C2 C2 domain. The C2 d 99.2 1.4E-10 3E-15 95.4 11.2 97 16-112 1-102 (102)
104 smart00239 C2 Protein kinase C 99.1 4.5E-10 9.7E-15 92.7 10.9 88 15-102 1-92 (101)
105 cd08374 C2F_Ferlin C2 domain s 99.1 7E-10 1.5E-14 96.8 10.1 87 16-102 2-121 (133)
106 KOG1028 Ca2+-dependent phospho 99.0 1E-09 2.2E-14 114.8 8.6 104 9-112 293-404 (421)
107 KOG1328 Synaptic vesicle prote 99.0 1.7E-10 3.8E-15 120.9 1.6 119 8-126 108-301 (1103)
108 COG5038 Ca2+-dependent lipid-b 98.9 2.8E-09 6.1E-14 118.1 10.6 105 11-115 1037-1145(1227)
109 PLN02223 phosphoinositide phos 98.9 1.1E-08 2.4E-13 107.4 14.4 105 13-118 408-523 (537)
110 COG5038 Ca2+-dependent lipid-b 98.9 7.9E-09 1.7E-13 114.6 12.2 121 9-129 431-560 (1227)
111 PLN02270 phospholipase D alpha 98.9 1.6E-08 3.4E-13 110.6 14.0 115 13-128 7-150 (808)
112 PLN02952 phosphoinositide phos 98.9 2.7E-08 5.9E-13 106.7 14.5 105 13-118 469-585 (599)
113 cd08689 C2_fungal_Pkc1p C2 dom 98.8 3.1E-08 6.6E-13 81.4 8.3 82 16-102 1-86 (109)
114 KOG1328 Synaptic vesicle prote 98.8 4E-09 8.6E-14 110.9 3.7 92 11-102 944-1047(1103)
115 PLN02230 phosphoinositide phos 98.7 1.1E-07 2.5E-12 101.8 13.5 105 13-118 468-584 (598)
116 PLN02222 phosphoinositide phos 98.7 2.8E-07 6.2E-12 98.6 14.4 105 13-118 451-567 (581)
117 KOG0169 Phosphoinositide-speci 98.6 1.9E-07 4.1E-12 100.2 11.9 103 15-118 617-730 (746)
118 KOG1031 Predicted Ca2+-depende 98.6 1.1E-07 2.3E-12 97.9 9.4 116 13-128 2-138 (1169)
119 PLN02228 Phosphoinositide phos 98.6 4.4E-07 9.6E-12 96.9 14.1 105 13-118 430-547 (567)
120 KOG1264 Phospholipase C [Lipid 98.3 3.4E-06 7.3E-11 90.3 10.5 89 13-102 1064-1160(1267)
121 KOG1326 Membrane-associated pr 98.3 4.4E-07 9.5E-12 99.3 3.7 97 5-101 603-703 (1105)
122 KOG2059 Ras GTPase-activating 98.3 1.3E-06 2.7E-11 92.6 6.4 93 21-114 138-253 (800)
123 PLN02352 phospholipase D epsil 98.1 2.2E-05 4.7E-10 86.2 12.5 110 12-129 8-133 (758)
124 KOG1013 Synaptic vesicle prote 97.9 1.2E-05 2.5E-10 78.6 4.6 98 13-110 232-337 (362)
125 KOG0905 Phosphoinositide 3-kin 97.7 3.4E-05 7.4E-10 85.9 4.8 102 13-114 1523-1635(1639)
126 KOG4347 GTPase-activating prot 97.7 3.7E-05 8.1E-10 81.4 4.5 97 159-274 7-109 (671)
127 cd08683 C2_C2cd3 C2 domain fou 97.6 0.00013 2.8E-09 62.1 5.6 97 16-112 1-143 (143)
128 PLN02964 phosphatidylserine de 97.5 0.00022 4.8E-09 77.8 7.0 84 12-102 52-137 (644)
129 KOG1327 Copine [Signal transdu 97.4 0.00046 9.9E-09 72.6 8.6 177 26-211 2-220 (529)
130 KOG1326 Membrane-associated pr 97.4 3E-05 6.6E-10 85.3 -0.1 104 11-114 203-317 (1105)
131 KOG1327 Copine [Signal transdu 97.2 0.00052 1.1E-08 72.2 6.5 82 21-103 143-235 (529)
132 KOG1013 Synaptic vesicle prote 97.1 0.0001 2.2E-09 72.2 -0.7 90 14-103 93-191 (362)
133 KOG2060 Rab3 effector RIM1 and 97.0 0.0004 8.7E-09 69.2 2.9 104 11-114 266-379 (405)
134 PF14470 bPH_3: Bacterial PH d 96.8 0.026 5.7E-07 46.2 11.7 84 171-271 1-87 (96)
135 KOG1011 Neurotransmitter relea 96.5 0.011 2.3E-07 62.7 8.6 99 15-114 1126-1237(1283)
136 PF14844 PH_BEACH: PH domain a 96.4 0.0042 9.2E-08 52.2 4.6 65 177-241 2-84 (106)
137 PF10698 DUF2505: Protein of u 96.3 0.53 1.2E-05 42.6 17.7 149 339-501 4-158 (159)
138 cd08684 C2A_Tac2-N C2 domain f 96.1 0.0075 1.6E-07 48.0 4.0 93 17-112 2-103 (103)
139 KOG1452 Predicted Rho GTPase-a 96.1 0.013 2.8E-07 57.2 6.2 114 11-126 48-167 (442)
140 KOG3837 Uncharacterized conser 96.0 0.0087 1.9E-07 60.5 4.6 113 14-126 367-503 (523)
141 PF12416 DUF3668: Cep120 prote 94.5 0.56 1.2E-05 47.7 12.3 110 16-128 2-134 (340)
142 cd08687 C2_PKN-like C2 domain 94.1 0.55 1.2E-05 37.8 9.0 85 33-125 7-92 (98)
143 KOG1265 Phospholipase C [Lipid 93.8 0.17 3.7E-06 56.0 7.5 101 8-117 697-808 (1189)
144 PF15627 CEP76-C2: CEP76 C2 do 93.5 1.4 3E-05 39.5 11.6 93 10-102 5-115 (156)
145 cd08693 C2_PI3K_class_I_beta_d 93.4 0.57 1.2E-05 43.1 9.4 86 15-102 9-120 (173)
146 cd08398 C2_PI3K_class_I_alpha 93.4 0.68 1.5E-05 41.9 9.6 84 15-102 9-106 (158)
147 cd08871 START_STARD10-like Lip 92.7 2.7 5.9E-05 40.2 13.4 154 339-509 52-214 (222)
148 cd01201 Neurobeachin Neurobeac 92.7 0.57 1.2E-05 39.1 7.2 87 175-277 1-104 (108)
149 PF10358 NT-C2: N-terminal C2 92.5 4.5 9.7E-05 35.5 13.7 115 11-129 4-136 (143)
150 cd08380 C2_PI3K_like C2 domain 92.4 0.92 2E-05 40.9 9.1 87 15-102 9-107 (156)
151 cd08397 C2_PI3K_class_III C2 d 92.1 0.73 1.6E-05 41.7 8.0 71 32-102 27-107 (159)
152 cd08868 START_STARD1_3_like Ch 92.1 5.2 0.00011 37.8 14.3 142 337-494 51-201 (208)
153 smart00234 START in StAR and p 91.2 13 0.00028 34.7 16.1 151 337-501 48-203 (206)
154 cd08876 START_1 Uncharacterize 90.8 10 0.00022 35.2 14.7 146 336-501 43-193 (195)
155 PF00407 Bet_v_1: Pathogenesis 89.9 14 0.0003 33.0 15.5 143 335-504 5-150 (151)
156 cd08905 START_STARD1-like Chol 89.9 7 0.00015 37.1 12.8 143 338-496 53-204 (209)
157 cd04012 C2A_PI3K_class_II C2 d 89.7 1.6 3.6E-05 39.9 8.1 90 13-102 7-119 (171)
158 PF01852 START: START domain; 89.2 6.5 0.00014 36.7 12.1 146 337-500 49-202 (206)
159 cd00177 START Lipid-binding ST 88.8 9.6 0.00021 34.8 12.8 122 337-472 42-167 (193)
160 cd08869 START_RhoGAP C-termina 88.6 18 0.00039 33.9 14.4 119 337-471 47-169 (197)
161 cd05018 CoxG Carbon monoxide d 87.4 18 0.00039 31.1 16.7 139 338-502 5-143 (144)
162 cd07821 PYR_PYL_RCAR_like Pyra 86.7 16 0.00034 31.2 12.2 103 336-461 3-106 (140)
163 cd08399 C2_PI3K_class_I_gamma 85.8 7.6 0.00016 35.8 9.8 69 15-84 11-88 (178)
164 cd08906 START_STARD3-like Chol 85.2 29 0.00063 32.8 13.9 146 337-498 52-206 (209)
165 PF11605 Vps36_ESCRT-II: Vacuo 84.9 4.7 0.0001 32.6 7.1 48 192-239 37-87 (89)
166 cd08694 C2_Dock-A C2 domains f 84.5 11 0.00024 35.2 10.2 54 47-100 54-114 (196)
167 cd08870 START_STARD2_7-like Li 83.8 39 0.00085 31.8 14.8 149 337-499 53-207 (209)
168 PF00792 PI3K_C2: Phosphoinosi 83.2 12 0.00025 33.1 9.7 54 49-102 23-85 (142)
169 cd07823 SRPBCC_5 Ligand-bindin 82.6 33 0.00071 30.0 12.7 72 420-501 70-143 (146)
170 cd08908 START_STARD12-like C-t 81.5 23 0.0005 33.4 11.4 119 337-471 55-176 (204)
171 cd08695 C2_Dock-B C2 domains f 80.9 20 0.00043 33.4 10.5 55 47-101 54-113 (189)
172 PF14429 DOCK-C2: C2 domain in 80.8 8.5 0.00018 35.6 8.2 55 48-102 61-121 (184)
173 cd08910 START_STARD2-like Lipi 80.7 38 0.00082 32.0 12.8 117 338-469 53-176 (207)
174 smart00142 PI3K_C2 Phosphoinos 80.1 12 0.00026 30.9 8.0 69 16-84 13-91 (100)
175 cd08873 START_STARD14_15-like 79.8 53 0.0011 31.8 13.4 114 337-461 80-199 (235)
176 cd08872 START_STARD11-like Cer 78.5 26 0.00057 33.9 11.1 152 338-505 56-231 (235)
177 cd08903 START_STARD5-like Lipi 78.0 63 0.0014 30.5 14.0 148 337-498 49-205 (208)
178 cd08874 START_STARD9-like C-te 77.7 64 0.0014 30.5 13.8 118 337-470 48-176 (205)
179 cd08904 START_STARD6-like Lipi 77.1 51 0.0011 31.1 12.3 142 337-494 49-199 (204)
180 PF15625 CC2D2AN-C2: CC2D2A N- 75.5 30 0.00065 31.5 10.0 79 35-114 37-124 (168)
181 cd08913 START_STARD14-like Lip 74.0 68 0.0015 31.1 12.5 113 337-461 84-204 (240)
182 PF08567 TFIIH_BTF_p62_N: TFII 73.9 14 0.00031 29.1 6.4 50 192-241 13-66 (79)
183 cd08877 START_2 Uncharacterize 73.6 22 0.00048 33.6 9.1 122 336-472 48-186 (215)
184 cd08867 START_STARD4_5_6-like 73.1 72 0.0016 29.9 12.4 123 337-471 49-179 (206)
185 cd08909 START_STARD13-like C-t 69.2 73 0.0016 30.1 11.3 120 338-472 56-178 (205)
186 cd08907 START_STARD8-like C-te 68.8 38 0.00083 31.9 9.1 53 418-473 124-179 (205)
187 PF07289 DUF1448: Protein of u 67.1 49 0.0011 33.6 10.0 100 171-283 19-129 (339)
188 cd08696 C2_Dock-C C2 domains f 65.2 24 0.00052 32.6 6.9 55 47-101 55-118 (179)
189 KOG0694 Serine/threonine prote 64.8 2.4 5.2E-05 46.4 0.4 93 33-127 26-122 (694)
190 cd08679 C2_DOCK180_related C2 62.5 20 0.00044 32.9 6.1 52 50-101 56-115 (178)
191 cd08697 C2_Dock-D C2 domains f 62.1 1.2E+02 0.0027 28.1 11.0 39 46-84 56-97 (185)
192 PF11696 DUF3292: Protein of u 56.5 41 0.00088 37.1 7.8 79 181-277 521-633 (642)
193 PF11687 DUF3284: Domain of un 53.2 1.4E+02 0.0031 25.4 10.4 95 338-461 3-97 (120)
194 smart00683 DM16 Repeats in sea 52.9 63 0.0014 23.6 5.9 32 192-224 20-51 (55)
195 cd08861 OtcD1_ARO-CYC_like N-t 52.0 1.3E+02 0.0028 25.7 9.3 59 438-502 82-140 (142)
196 KOG1329 Phospholipase D1 [Lipi 50.8 35 0.00076 38.8 6.4 80 35-114 138-221 (887)
197 KOG4269 Rac GTPase-activating 49.3 15 0.00031 41.6 3.1 99 8-112 753-866 (1112)
198 PF06115 DUF956: Domain of unk 45.3 1.1E+02 0.0025 26.0 7.1 53 187-241 19-76 (118)
199 PTZ00447 apical membrane antig 44.9 3.1E+02 0.0067 28.0 11.2 107 15-128 59-173 (508)
200 PF10604 Polyketide_cyc2: Poly 44.4 1.9E+02 0.0041 24.2 14.8 104 337-469 5-108 (139)
201 KOG4471 Phosphatidylinositol 3 43.5 1.1E+02 0.0023 33.5 8.2 88 165-267 30-123 (717)
202 PF07289 DUF1448: Protein of u 40.9 4.1E+02 0.0089 27.1 11.8 98 170-283 150-255 (339)
203 cd08911 START_STARD7-like Lipi 40.9 3.1E+02 0.0067 25.7 14.9 145 339-497 50-203 (207)
204 cd08862 SRPBCC_Smu440-like Lig 37.6 2.5E+02 0.0053 23.6 12.2 57 439-502 80-136 (138)
205 PF07162 B9-C2: Ciliary basal 36.2 3.3E+02 0.0071 24.6 10.4 78 16-99 4-101 (168)
206 PF11618 DUF3250: Protein of u 35.9 87 0.0019 26.2 5.2 63 38-102 2-73 (107)
207 cd07814 SRPBCC_CalC_Aha1-like 35.1 2.7E+02 0.0058 23.3 13.2 135 338-503 4-138 (139)
208 cd07817 SRPBCC_8 Ligand-bindin 29.7 3.3E+02 0.0073 22.7 12.0 27 441-470 80-106 (139)
209 cd07812 SRPBCC START/RHO_alpha 28.7 3.1E+02 0.0068 22.1 13.3 31 440-473 84-114 (141)
210 COG4687 Uncharacterized protei 27.5 1.2E+02 0.0026 25.4 4.5 59 192-266 24-85 (122)
211 cd07818 SRPBCC_1 Ligand-bindin 26.9 4E+02 0.0087 22.8 13.0 58 440-502 91-148 (150)
212 cd07826 SRPBCC_CalC_Aha1-like_ 25.4 4.4E+02 0.0095 22.7 13.4 138 336-503 2-141 (142)
213 COG2867 Oligoketide cyclase/li 24.7 74 0.0016 28.2 2.9 27 441-470 86-112 (146)
214 cd07825 SRPBCC_7 Ligand-bindin 24.0 4.4E+02 0.0096 22.3 11.9 19 337-355 3-21 (144)
215 PRK10724 hypothetical protein; 23.5 1E+02 0.0022 27.7 3.8 107 336-469 17-123 (158)
216 cd08900 SRPBCC_CalC_Aha1-like_ 22.3 5E+02 0.011 22.2 16.4 141 336-503 2-142 (143)
217 cd08865 SRPBCC_10 Ligand-bindi 21.3 4.7E+02 0.01 21.6 13.6 56 440-502 83-138 (140)
218 cd07822 SRPBCC_4 Ligand-bindin 20.7 4.9E+02 0.011 21.5 10.1 137 338-502 4-140 (141)
219 PF01060 DUF290: Transthyretin 20.0 1.4E+02 0.0029 23.4 3.4 25 73-97 11-35 (80)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=1.4e-36 Score=323.42 Aligned_cols=320 Identities=20% Similarity=0.298 Sum_probs=242.9
Q ss_pred cccceee--ecCCcceeEeeeeeeeecccccceeEEEeCCeEEEEecCCCceeEEEEeecccee--ccccc-cccCcEEE
Q 009787 163 GPLQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHA-FINPAITI 237 (525)
Q Consensus 163 ~~f~~lF--~lp~~E~l~~~~~c~l~~~~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~--k~~~~-~~~~~i~i 237 (525)
..|...+ ++|+++.|+.+|+|++++.+.+|||||+++.||||||++|||+++.+||+++|.. |++++ .++|+|.|
T Consensus 107 ~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i 186 (590)
T KOG1032|consen 107 VNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEI 186 (590)
T ss_pred hhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEE
Confidence 3444444 3899999999999999999999999999999999999999999999999999999 66654 56789999
Q ss_pred EEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHHHHhhccCchHHHHhhhhhhhhcCC-CCCCCC-ccccccc
Q 009787 238 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHS-SSIGGS-RRQAKIV 315 (525)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~s~~~~-~~~~~~~ 315 (525)
.+ ++.+|+|++|++||.+|.++..+.+..-....... ...+.+.... ...++. ..-++..
T Consensus 187 ~t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~--~~~~~l~~~~~~~~~~~~~~~~~~~ 248 (590)
T KOG1032|consen 187 TT----------------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPR--ADSDYLSSVEPEVNDDQQGNVDNSQ 248 (590)
T ss_pred ec----------------CCCcceeeecccCccHHHHHHHhhhhcccccCCcc--ccchhcccCCCCcCcccccccccCC
Confidence 96 56899999999999999977444443211110000 0000000000 000000 0000000
Q ss_pred cc-------ccCC----CCCCCCCccccccceeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCC
Q 009787 316 EE-------TVTK----PEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEY 384 (525)
Q Consensus 316 ~~-------~~~~----~~~~~p~~~e~~~~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~ 384 (525)
++ ..+. ..+.+..+++. +..+.+..+++++..+|.++|+ +..|+..+++.++..++...+|.....
T Consensus 249 ~~s~~~~s~~~~~~e~~~~~~~~~~~~~-~~v~~~~~~s~~~~~~~~~lf~-d~~~~~~~l~~~~~~~vs~~~~~~~~~- 325 (590)
T KOG1032|consen 249 SPSALQNSFDSPKEEELEHDFSCSLSRL-FGVLGRLPFSAPIGAFFSLLFG-DNTFFFFFLEDQDEIQVSPIPWKGPRS- 325 (590)
T ss_pred CccccccccCCCcccccccccccccccc-ccccccccccccccccceeecc-CcceeeeccccccccccccccccCCCc-
Confidence 00 0000 01122222222 2468899999999999999999 677888899999999999999998766
Q ss_pred CCcEEEEEEEeecCCCCCCcceeEeEEEEEEecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEee
Q 009787 385 DGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVS 464 (525)
Q Consensus 385 ~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~ 464 (525)
+...|.++|++++..++|||+|.|..+|.+.+.+...|+.|..++.+++||||++|.|.+||+|+|.+++.|+++++
T Consensus 326 ~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~--- 402 (590)
T KOG1032|consen 326 GILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVS--- 402 (590)
T ss_pred cceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecce---
Confidence 78999999999999999999999999999998777778999999999999999999999999999999999999999
Q ss_pred eeEEEeecceeeeeeeech--HHHHHHHHHHHHHHHHHHHhhcC
Q 009787 465 AGAHFKKWCVIQFKIKTGA--VNKYKKEVELMLETARSYIKICT 506 (525)
Q Consensus 465 ~~V~f~K~~~~K~~Ie~~~--~~~~~~~~~~~~~~~~~~~~~~~ 506 (525)
.+|.|.+++|.+.+++..+ .+.+.+.++.++..+++..+..+
T Consensus 403 ~~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~ 446 (590)
T KOG1032|consen 403 TSVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQE 446 (590)
T ss_pred eEEEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhc
Confidence 9999999999988888876 56677777777765555444433
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=2e-20 Score=161.45 Aligned_cols=111 Identities=20% Similarity=0.292 Sum_probs=98.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccC-CCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009787 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~ 91 (525)
.|.|.|+|++|++|+..+ .|++||||++.++++.++|+++.+ +.||+|||+|.|.+.+....|.|+|||+|.+++|++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER 79 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence 479999999999998877 799999999999999999999866 799999999999998766789999999999999999
Q ss_pred eEEEEEEcc-cC--CCcccEEEEccC-----CCceEEEEEE
Q 009787 92 LGSVIVTVE-SE--GQTGAVWYTLDS-----PSGQVCLHIK 124 (525)
Q Consensus 92 iG~~~i~l~-~l--~~~~~~w~~L~~-----~~G~i~l~i~ 124 (525)
||.+.+++. .+ +...+.|++|.+ +.|+|+|+|.
T Consensus 80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~ 120 (121)
T cd04016 80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFS 120 (121)
T ss_pred EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEe
Confidence 999999996 45 555789999976 3377887775
No 3
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=1.8e-19 Score=158.86 Aligned_cols=99 Identities=25% Similarity=0.436 Sum_probs=92.6
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009787 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (525)
Q Consensus 12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~ 91 (525)
.-|+|+|+|++|.||..+|..+++||||++.+++++.+|+++.+++||+|||.|+|.+.++...|+++|||+|.++.|||
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~ 83 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF 83 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence 46899999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcccCCCcccEEE
Q 009787 92 LGSVIVTVESEGQTGAVWY 110 (525)
Q Consensus 92 iG~~~i~l~~l~~~~~~w~ 110 (525)
||.++|++..+......++
T Consensus 84 mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 84 MGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred cceeeeccHHHHHHhhhhc
Confidence 9999999999954445555
No 4
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=1.1e-18 Score=150.55 Aligned_cols=112 Identities=24% Similarity=0.358 Sum_probs=101.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~iG 93 (525)
+|+|+|++|++|+..+..+.+||||.+++++...+|+++.+++||.|||+|.|.+.+. ...|.|+|||++..+++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999999889999999999999999999999999999999999998764 678999999999998999999
Q ss_pred EEEEEcccC--CCcccEEEEccCCCceEEEEEEEE
Q 009787 94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTI 126 (525)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~~G~i~l~i~~~ 126 (525)
.+.+++.++ +...+.|++|.+..|++++.+.+.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEec
Confidence 999999988 566788999998779988777653
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=5.9e-19 Score=154.47 Aligned_cols=99 Identities=25% Similarity=0.494 Sum_probs=89.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC------CCcEEEEEEEEcCCCCCC
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS 89 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~------~~~~L~~~V~d~d~~~~d 89 (525)
++|+|++|+||++++..|.+||||.+.++...++|+++.+++||+|||+|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999989999999999999999999999999999999999999865 356799999999999899
Q ss_pred ceeEEEEEEcccCC----CcccEEEEccC
Q 009787 90 TVLGSVIVTVESEG----QTGAVWYTLDS 114 (525)
Q Consensus 90 d~iG~~~i~l~~l~----~~~~~w~~L~~ 114 (525)
++||++.+++.++. .....||+|.+
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 99999999999873 44578999975
No 6
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.3e-18 Score=151.16 Aligned_cols=100 Identities=21% Similarity=0.368 Sum_probs=91.3
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC----
Q 009787 15 LIKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW---- 87 (525)
Q Consensus 15 ~L~V~i~~A~~---L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~---- 87 (525)
.|.|+|++|+| |+.+|..|.+||||++.+++++.+|+++.+++||+|||+|.|.+......|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 48999999999 89999999999999999999999999999999999999999999877778999999999874
Q ss_pred --CCceeEEEEEEcccC--CCcccEEEEccC
Q 009787 88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 88 --~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (525)
+|++||++.+++..+ +.....||+|..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 899999999999988 455578999974
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.78 E-value=3.6e-18 Score=148.37 Aligned_cols=111 Identities=23% Similarity=0.474 Sum_probs=97.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (525)
.|+|+|++|++|+..+..|.+||||.+.+++ ..++|+++.+++||.|||+|.|.+......|.|+|||++..+++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 4799999999999999999999999999987 567999999999999999999999877788999999999999999999
Q ss_pred EEEEEcccC--CCcccEEEEccCCC-----ceEEEEEEE
Q 009787 94 SVIVTVESE--GQTGAVWYTLDSPS-----GQVCLHIKT 125 (525)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~~-----G~i~l~i~~ 125 (525)
.+.+++.++ +...+.|++|.++. |.+.+.+.+
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~ 119 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTL 119 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEE
Confidence 999999998 56678899997533 566666554
No 8
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.77 E-value=5.8e-18 Score=146.88 Aligned_cols=109 Identities=27% Similarity=0.440 Sum_probs=94.4
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787 16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 16 L~V~i~~A~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (525)
|.|+|++|+||++++ ..|.+||||.+.++.. .++|+++++++||.|||+|.|.+.+....|.|.|||++..+++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 689999999999974 4678999999999765 46899999999999999999999876688999999999999999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC------CceEEEEEE
Q 009787 94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK 124 (525)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~------~G~i~l~i~ 124 (525)
.+.++++++ +...+.||+|.+. .|++++.++
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999998 4556789999863 477766654
No 9
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=1e-17 Score=144.98 Aligned_cols=112 Identities=23% Similarity=0.461 Sum_probs=99.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (525)
|.|.|+|++|++|+..+..+.+||||.+++++..++|+++.++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 67999999999999999899999999999998889999999999999999999998876788999999999888999999
Q ss_pred EEEEEcccCCCcccEEEEccCC------CceEEEEEEE
Q 009787 94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKT 125 (525)
Q Consensus 94 ~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~i~~ 125 (525)
++.+++.++......|+.|..+ .|++.+++++
T Consensus 81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999996666789999652 3555555543
No 10
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.77 E-value=4.5e-18 Score=147.07 Aligned_cols=110 Identities=23% Similarity=0.376 Sum_probs=94.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccC-CCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd~ 91 (525)
|.|.|+|++|++|+..+..+.+||||++.+++..++|+++.+ ++||.|||.|.|.+.. ..+.|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 689999999999999999999999999999988889998754 7999999999999876 3567999999999876 899
Q ss_pred eEEEEEEcccC--CCcccEEEEccCC---CceEEEEEE
Q 009787 92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK 124 (525)
Q Consensus 92 iG~~~i~l~~l--~~~~~~w~~L~~~---~G~i~l~i~ 124 (525)
||++.+++.++ +.....|++|..+ .|+|.+++.
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~ 117 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence 99999999987 4456889999763 255555543
No 11
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=7.6e-18 Score=147.75 Aligned_cols=112 Identities=24% Similarity=0.427 Sum_probs=98.2
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCc
Q 009787 14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST 90 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~--~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd 90 (525)
|+|+|+|++|++|+..+. .+.+||||.+.++...++|+++++++||.|||+|.|.+.. ....|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999998 8899999999999999999999999999999999999876 4678999999999988999
Q ss_pred eeEEEEEEcccCC-----CcccEEEEccCC--------CceEEEEEEE
Q 009787 91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT 125 (525)
Q Consensus 91 ~iG~~~i~l~~l~-----~~~~~w~~L~~~--------~G~i~l~i~~ 125 (525)
+||.+.+++.++. .....||.|.++ .|++++++.|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999873 335789999764 4666666543
No 12
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=1.6e-17 Score=146.94 Aligned_cols=117 Identities=22% Similarity=0.413 Sum_probs=100.4
Q ss_pred CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCC
Q 009787 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIW 87 (525)
Q Consensus 9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~ 87 (525)
.....|.|+|+|++|++|++.+..|.+||||++.++...++|+++++++||.|||+|.|.+.+. ...|.|+|||++..+
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~ 89 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFS 89 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCC
Confidence 3455799999999999999999999999999999999999999999999999999999998654 467999999999999
Q ss_pred CCceeEEEEEEcccCCC-------cccEEEEccC-CCceEEEEEEE
Q 009787 88 KSTVLGSVIVTVESEGQ-------TGAVWYTLDS-PSGQVCLHIKT 125 (525)
Q Consensus 88 ~dd~iG~~~i~l~~l~~-------~~~~w~~L~~-~~G~i~l~i~~ 125 (525)
+|++||++.+++.++.. ....|..|.. ..|++++.+.+
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 99999999999998721 2235666654 44888888765
No 13
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=7.9e-18 Score=147.54 Aligned_cols=111 Identities=21% Similarity=0.370 Sum_probs=94.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC----CcEEEEEEEEcCCCC-CC
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS 89 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~----~~~L~~~V~d~d~~~-~d 89 (525)
.|.|+|++|++|++.+..|.+||||.+.++++.++|+++.+++||.|||.|.|.+.++ ...|.|+|||++.++ .+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3899999999999999889999999999999999999999999999999999998653 246999999999887 89
Q ss_pred ceeEEEEEEcccC---CCcccEEEEccCC------CceEEEEEEE
Q 009787 90 TVLGSVIVTVESE---GQTGAVWYTLDSP------SGQVCLHIKT 125 (525)
Q Consensus 90 d~iG~~~i~l~~l---~~~~~~w~~L~~~------~G~i~l~i~~ 125 (525)
++||++.+++.++ +.....||+|..+ .|++.+.+.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 9999999999987 3446789999753 3555555543
No 14
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=7.4e-18 Score=143.29 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=86.5
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~----~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d 82 (525)
.+..+.|+|+|++|++|+ . .|.+||||.+++.. .+++|+++++|+||+|||+|.|++.. ....|.|+|||
T Consensus 10 ~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 466899999999999998 2 46799999999853 46689999999999999999999864 35569999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009787 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (525)
Q Consensus 83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L 112 (525)
+|+++++++||++.++++.+ +...++|.+|
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999999999976 6667788765
No 15
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=2.2e-17 Score=148.40 Aligned_cols=112 Identities=17% Similarity=0.339 Sum_probs=96.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccC-CCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCcee
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL 92 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~i 92 (525)
.|.|+|++|++|++++..|.+||||++.++++..+|+++.+ ++||+|||+|.|.+.++ ...|.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37899999999999999999999999999999999999876 69999999999998654 45799999999988889999
Q ss_pred EEEEEEcccCC------CcccEEEEccCCC------------ceEEEEEEEE
Q 009787 93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTI 126 (525)
Q Consensus 93 G~~~i~l~~l~------~~~~~w~~L~~~~------------G~i~l~i~~~ 126 (525)
|++.+++..+. ...+.||+|.... |++++.+.+.
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 99999999883 3357899998643 5566666555
No 16
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=2.2e-17 Score=143.26 Aligned_cols=111 Identities=24% Similarity=0.465 Sum_probs=97.9
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCC
Q 009787 14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII 86 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~------~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~ 86 (525)
|+|.|+|++|++|+..+. .|.+||||++.+++..++|+++.++.||.|+|+|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 679999999999998875 3689999999999989999999999999999999999864 467899999999987
Q ss_pred CCCceeEEEEEEcccC--CCcccEEEEccC-CCceEEEEEEE
Q 009787 87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT 125 (525)
Q Consensus 87 ~~dd~iG~~~i~l~~l--~~~~~~w~~L~~-~~G~i~l~i~~ 125 (525)
++++||.+.+++.++ ....+.||+|.+ ..|++++.++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 889999999999988 444679999986 57999888764
No 17
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=2.2e-17 Score=144.56 Aligned_cols=109 Identities=23% Similarity=0.420 Sum_probs=92.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (525)
|.|+|++|+||+. ..|.+||||++.++. ...+|+++.+++||.|||.|.|.+......|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999988 678999999999973 567999999999999999999999766778999999999998999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEE
Q 009787 94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTI 126 (525)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~i~~~ 126 (525)
++.+++.++ ......|++|.++ .|++.+++.+.
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence 999999998 4556789999864 25555555554
No 18
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=2.2e-17 Score=142.96 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=95.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd 90 (525)
.|.|+|++|++|+..+..+.+||||++.+. ...++|+++.++.||.|||+|.|.+... ...|.|+|||+|.. +|+
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~ 79 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD 79 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence 378999999999999988999999999985 3567899999999999999999998653 45699999999988 899
Q ss_pred eeEEEEEEcccC--CCcccEEEEccCC-CceEEEEEEEE
Q 009787 91 VLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI 126 (525)
Q Consensus 91 ~iG~~~i~l~~l--~~~~~~w~~L~~~-~G~i~l~i~~~ 126 (525)
+||++.+++.++ +.....|++|.++ .|++.+++.++
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~ 118 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE 118 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence 999999999998 5667889999863 57777777654
No 19
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=2.8e-17 Score=142.77 Aligned_cols=109 Identities=25% Similarity=0.437 Sum_probs=94.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEE
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS 94 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~ 94 (525)
|.|+|++|++|++++..|.+||||++.+++.. .+|+++.+++||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999999999999999999998654 59999999999999999999998767889999999999999999999
Q ss_pred EEEEcccCC---CcccEEEEccCC------CceEEEEEE
Q 009787 95 VIVTVESEG---QTGAVWYTLDSP------SGQVCLHIK 124 (525)
Q Consensus 95 ~~i~l~~l~---~~~~~w~~L~~~------~G~i~l~i~ 124 (525)
+.++++++. ...+.|++|.+. .|++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999998872 236789999752 466665543
No 20
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.74 E-value=7.1e-17 Score=141.22 Aligned_cols=100 Identities=17% Similarity=0.305 Sum_probs=91.7
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009787 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~i 92 (525)
..+|+|+|++|++|+..+..|.+||||.+.++++.++|++++++.||.|||.|.|.+......|.|+|||++.. .|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 57899999999999999999999999999999999999999999999999999999887788899999999876 58999
Q ss_pred EEEEEEcccCCCcccEEEEcc
Q 009787 93 GSVIVTVESEGQTGAVWYTLD 113 (525)
Q Consensus 93 G~~~i~l~~l~~~~~~w~~L~ 113 (525)
|.+.+++.++......|++|.
T Consensus 81 G~~~~~l~~~~~~~~~~~~l~ 101 (126)
T cd04046 81 GQATLSADPNDSQTLRTLPLR 101 (126)
T ss_pred EEEEEecccCCCcCceEEEcc
Confidence 999999998866667889985
No 21
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.74 E-value=2.5e-17 Score=143.08 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=87.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEe-cC---CCcEEEEEEEEc
Q 009787 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYDW 83 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v-~~---~~~~L~~~V~d~ 83 (525)
.+.|.|+|++|++|++++ .+.+||||++++. ..+++|++++++.||.|||+|.|.+ .. ....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 8999999999985 3467899999999999999999987 31 356799999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009787 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (525)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L 112 (525)
+..+++++||++.+++.++ ......||+|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999998 4446789987
No 22
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.73 E-value=7.1e-17 Score=140.67 Aligned_cols=99 Identities=29% Similarity=0.592 Sum_probs=90.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEE
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGS 94 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~iG~ 94 (525)
|+|+|++|++|+.++..+.+||||.+++++...+|+++.+++||.|||+|.|.+... ...|.|+|||++..+++++||.
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK 81 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence 789999999999999888999999999998889999999999999999999998764 5679999999999999999999
Q ss_pred EEEEcccC--CCcccEEEEccC
Q 009787 95 VIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 95 ~~i~l~~l--~~~~~~w~~L~~ 114 (525)
+.+++.++ ....+.|+.|.+
T Consensus 82 ~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 82 VVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEHHHcccCCCCCCEEECCC
Confidence 99999988 344678999976
No 23
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=5.9e-17 Score=141.95 Aligned_cols=110 Identities=29% Similarity=0.533 Sum_probs=95.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC--------
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII-------- 86 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~-------- 86 (525)
.|+|+|++|++|+..+..|.+||||.+.++...++|+++.+++||.|||+|.|.+..+...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999999999999999999999888899999999999999999999876667899999999853
Q ss_pred ---CCCceeEEEEEEcccCCCcccEEEEccCCCc--eEEEEEE
Q 009787 87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSPSG--QVCLHIK 124 (525)
Q Consensus 87 ---~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G--~i~l~i~ 124 (525)
+.+++||.+.+++.++....+.|+.|.++.+ .+++.|.
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~ 124 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIR 124 (127)
T ss_pred ccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEE
Confidence 4689999999999999766789999987442 2444443
No 24
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.73 E-value=5.6e-17 Score=140.73 Aligned_cols=105 Identities=23% Similarity=0.430 Sum_probs=90.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeEE
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLGS 94 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd~iG~ 94 (525)
|.|+|++|++|+.+ .+||||.+.+++...+|+++++++||.|||+|.|.+.. ....|.|+|||++.. ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999887 78999999999988899999999999999999999876 467799999999977 7899999
Q ss_pred EEEEcccCCC-------cccEEEEccCCC-----ceEEEEEEE
Q 009787 95 VIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIKT 125 (525)
Q Consensus 95 ~~i~l~~l~~-------~~~~w~~L~~~~-----G~i~l~i~~ 125 (525)
+.++++++.. ....||+|.+.. |+|++.|.+
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999822 235899998744 666666654
No 25
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=5.9e-17 Score=139.52 Aligned_cols=99 Identities=15% Similarity=0.304 Sum_probs=84.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----C--eEEEeecccCCCCCeeccEEEEEecCC----CcEEEEEEEEc
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-----S--EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW 83 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~--~~~kT~~~~~t~nP~W~e~f~~~v~~~----~~~L~~~V~d~ 83 (525)
.|+|+|++|++|+..+ .|.+||||++++. . ++++|+++.+++||+|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999988 5999999999973 2 245899999999999999999998632 24599999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (525)
|..+++++||++.+++..+ +...+.|++|.+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9888899999999999999 455678999975
No 26
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.72 E-value=1.4e-16 Score=144.61 Aligned_cols=112 Identities=20% Similarity=0.383 Sum_probs=94.8
Q ss_pred ceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeecccCCCCCee
Q 009787 13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW 61 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W 61 (525)
.|.|.|+|++|++|+.+| ..|.+||||.+++++.. .+|+++.++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 589999999999999987 35678999999998765 59999999999999
Q ss_pred ccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEE
Q 009787 62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKT 125 (525)
Q Consensus 62 ~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~i~~ 125 (525)
||+|.|.+....+.|.|.|||+|..+ +++||.+.++++++ +...+.|++|... .|++++.+++
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998777778999999999875 57999999999998 5567899999642 2456666554
No 27
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=6.8e-17 Score=143.71 Aligned_cols=103 Identities=16% Similarity=0.287 Sum_probs=89.8
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEE-EcCC
Q 009787 13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI 85 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~-d~d~ 85 (525)
.+.|.|+|++|+||++.+ ..|.+||||++++.. .+++|+++++++||+|||+|.|.+......|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 578999999999999874 578899999999842 256899999999999999999999866778999999 6888
Q ss_pred CCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787 86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (525)
Q Consensus 86 ~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~ 115 (525)
.+++++||++.|+|+.+ +.....||+|.++
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 88899999999999998 4556789999874
No 28
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=9.9e-17 Score=141.72 Aligned_cols=100 Identities=23% Similarity=0.397 Sum_probs=88.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~ 87 (525)
+|+|+|++|++|+.++..|.+||||++.+.+. ..+|+++.+++||.|||+|.|.+......|.|+|||++..+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 48999999999999998899999999998654 46899999999999999999998776778999999999999
Q ss_pred CCceeEEEEEEcccCC--Cc------ccEEEEccC
Q 009787 88 KSTVLGSVIVTVESEG--QT------GAVWYTLDS 114 (525)
Q Consensus 88 ~dd~iG~~~i~l~~l~--~~------~~~w~~L~~ 114 (525)
++++||.+.+++.++. .. ...||+|.+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~ 115 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP 115 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence 9999999999999982 11 348999985
No 29
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=1.5e-16 Score=136.58 Aligned_cols=96 Identities=22% Similarity=0.426 Sum_probs=84.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (525)
+.|.|+|++|++|+.++ ..||||.+.+++++.+|++.++ .||.|||+|.|.+.+....|.|+|||+|.+ .||+||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 57999999999997655 4589999999999889999877 499999999999988777899999999865 899999
Q ss_pred EEEEEcccC--C--CcccEEEEccC
Q 009787 94 SVIVTVESE--G--QTGAVWYTLDS 114 (525)
Q Consensus 94 ~~~i~l~~l--~--~~~~~w~~L~~ 114 (525)
++.++|.++ . ....+||+|.+
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecCh
Confidence 999999998 2 23378999987
No 30
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.71 E-value=2.8e-16 Score=138.64 Aligned_cols=113 Identities=19% Similarity=0.336 Sum_probs=98.9
Q ss_pred ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEEEE
Q 009787 13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY 81 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~~----------g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~ 81 (525)
.|.|+|+|++|++|++.+.. +.+||||++.++++. .+|+++.+++||.|||+|.|.+.+ ...|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence 47899999999999988863 679999999998765 589999999999999999999974 678999999
Q ss_pred EcCCCCCCceeEEEEEEcccCC----CcccEEEEccCCCceEEEEEEEEe
Q 009787 82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTIK 127 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~----~~~~~w~~L~~~~G~i~l~i~~~~ 127 (525)
|++..+++++||.+.+++.++. ...+.|++|.+ .|++++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-CcEEEEEEEEec
Confidence 9998889999999999999872 34688999985 799999888764
No 31
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.71 E-value=9.4e-17 Score=140.21 Aligned_cols=104 Identities=21% Similarity=0.365 Sum_probs=89.4
Q ss_pred CCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V 80 (525)
.+..+.|.|+|++|+||++++.. |.+||||.+++. ...++|+++++++||.|||+|.|.+.. ....|.|+|
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 34567899999999999999975 899999999984 234689999999999999999999853 245799999
Q ss_pred EEcCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009787 81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (525)
||++..+++++||++.++|..+ ......||+|+
T Consensus 91 ~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999999999999999999998 44457899984
No 32
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=2.6e-16 Score=139.37 Aligned_cols=114 Identities=19% Similarity=0.416 Sum_probs=95.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC----------CCcEEEEEEEEc
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW 83 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~----------~~~~L~~~V~d~ 83 (525)
+.|+|+|++|++|++++..|.+||||++.+++..++|+++++++||.|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999997432 125699999999
Q ss_pred CCCCCCceeEEEEE-EcccC-----CCcccEEEEccC---CCceEEEEEEEEe
Q 009787 84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTIK 127 (525)
Q Consensus 84 d~~~~dd~iG~~~i-~l~~l-----~~~~~~w~~L~~---~~G~i~l~i~~~~ 127 (525)
|..++|++||++.+ ++..+ .....+|++|.. ..|+|.+.+++..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence 99999999999986 43333 245679999975 3477887777664
No 33
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.70 E-value=1.6e-16 Score=138.74 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=89.4
Q ss_pred CCCceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V 80 (525)
.+..+.|.|+|++|+||++.+. .|.+||||++++. ...++|+++++++||.|||+|.|.+.. ....|.|+|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 3567889999999999998875 5889999999984 235689999999999999999999854 245799999
Q ss_pred EEcCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009787 81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (525)
||++..+++++||++.+++..+ ......|++|.
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999999999999999999998 45567899984
No 34
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.70 E-value=1.6e-16 Score=138.62 Aligned_cols=104 Identities=22% Similarity=0.414 Sum_probs=91.9
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW 83 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d~ 83 (525)
.+..+.|.|+|++|++|++++..|.+||||.+.+. ...++|+++++++||.|+|+|.|.+... ...|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 34578999999999999999999999999999983 3457899999999999999999997642 45799999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009787 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (525)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (525)
+.++++++||++.++++++ +...+.|++|+
T Consensus 92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999999999999999 55678899986
No 35
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.70 E-value=4.4e-16 Score=136.21 Aligned_cols=113 Identities=25% Similarity=0.472 Sum_probs=97.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS 89 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~d 89 (525)
+.|+|+|++|++|+..+..+.+||||.+.+.. ..++|+++.+++||.|||+|.|.+... ...|.|+|||++..+++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 36899999999999999999999999999764 356899999999999999999998764 56799999999998899
Q ss_pred ceeEEEEEEcccC--C---CcccEEEEccCCCceEEEEEEEEe
Q 009787 90 TVLGSVIVTVESE--G---QTGAVWYTLDSPSGQVCLHIKTIK 127 (525)
Q Consensus 90 d~iG~~~i~l~~l--~---~~~~~w~~L~~~~G~i~l~i~~~~ 127 (525)
++||++.+++.++ . ...+.|++|.+ +|++.+.+.+..
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEee
Confidence 9999999999875 2 24568999986 788888877663
No 36
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=1.8e-16 Score=134.07 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=87.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~iG 93 (525)
.|.|+|++|++|+..+..+.+||||.++++++.++|+++.++.||.|||.|.|.+..+ ...|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 4889999999999999889999999999999999999999999999999999999763 5679999999886 78999
Q ss_pred EEEEEcccC--C--CcccEEEEccCC
Q 009787 94 SVIVTVESE--G--QTGAVWYTLDSP 115 (525)
Q Consensus 94 ~~~i~l~~l--~--~~~~~w~~L~~~ 115 (525)
++.+++.++ . ...+.||+|.++
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCCC
Confidence 999999988 2 246789999863
No 37
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.69 E-value=2.6e-16 Score=137.31 Aligned_cols=103 Identities=23% Similarity=0.412 Sum_probs=90.9
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009787 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD 84 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d 84 (525)
...+.|.|+|++|++|++++..+.+||||++.+. ...++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 4567899999999999999989999999999974 245689999999999999999999754 2457999999999
Q ss_pred CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009787 85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (525)
Q Consensus 85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (525)
.++++++||++.+++.++ +...++|++|.
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999999999999999998 56678999986
No 38
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.69 E-value=7.6e-16 Score=134.66 Aligned_cols=110 Identities=22% Similarity=0.343 Sum_probs=91.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCC-cEEEEEEEEcCCCCCCce
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWKSTV 91 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~-~~L~~~V~d~d~~~~dd~ 91 (525)
..|+|+|++|++|++. +.+||||.+.+++.. .+|++ .+++||.|||+|.|.+.++. ..|.|.|||++..++|++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 4699999999999875 478999999998754 57887 46899999999999865433 579999999999999999
Q ss_pred eEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEEe
Q 009787 92 LGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK 127 (525)
Q Consensus 92 iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~i~~~~ 127 (525)
||.+.+++..+ +...+.|++|.+. .|+|++.+++..
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999988 4556789999763 278888887763
No 39
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.69 E-value=2.1e-16 Score=138.34 Aligned_cols=104 Identities=18% Similarity=0.374 Sum_probs=89.1
Q ss_pred CCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI 80 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V 80 (525)
....+.|.|+|++|+||++++.. |.+||||++++. ..++||+++++++||+|||+|.|.+... ...|.+.|
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 35568999999999999999875 999999999974 2366899999999999999999998542 46799999
Q ss_pred EEcCCCCCCceeEEEEEEcccCC-----CcccEEEEcc
Q 009787 81 YDWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD 113 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~-----~~~~~w~~L~ 113 (525)
||.+.++++++||++.|++.++. .....||+|.
T Consensus 91 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 91 WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999999999999999882 2456899984
No 40
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=2.6e-16 Score=137.40 Aligned_cols=104 Identities=21% Similarity=0.372 Sum_probs=89.8
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTI 80 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V 80 (525)
.+..+.|.|+|++|++|+.++..+.+||||.+.+.. ..++|++++++.||.|||+|.|.+.. ....|.|+|
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 455788999999999999999889999999999854 45689999999999999999998533 256799999
Q ss_pred EEcCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 009787 81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~ 113 (525)
||++..+.+++||++.+++.+. ......||+|+
T Consensus 92 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~ 125 (125)
T cd04031 92 WDYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ 125 (125)
T ss_pred EeCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence 9999998999999999999985 44457899984
No 41
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.69 E-value=2.7e-16 Score=133.40 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=80.3
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC--CCcEEEEEEEEcCCCC
Q 009787 14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW 87 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~----g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~--~~~~L~~~V~d~d~~~ 87 (525)
|+|.|+|++|++|++.+.. +.+||||++.++...++|+++++++||+|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 7899999999999988742 358999999999888999999999999999999999754 2446999999999999
Q ss_pred CCceeEEEEEEcccC
Q 009787 88 KSTVLGSVIVTVESE 102 (525)
Q Consensus 88 ~dd~iG~~~i~l~~l 102 (525)
+|++||++.++|.++
T Consensus 81 ~dd~IG~~~l~L~~l 95 (108)
T cd04039 81 FNDYVATGSLSVQEL 95 (108)
T ss_pred CCcceEEEEEEHHHH
Confidence 999999999999988
No 42
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=2.7e-16 Score=140.67 Aligned_cols=99 Identities=21% Similarity=0.384 Sum_probs=85.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEec---------------C-CC
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------E-LP 73 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~---------------~-~~ 73 (525)
.|.|+|++|++|+. ..|.+||||.+.+.. ..++|+++.+++||+|||+|.|.+. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38899999999998 578999999999865 5668999999999999999999984 1 12
Q ss_pred cEEEEEEEEcCCCCCCceeEEEEEEcccCC---CcccEEEEccCC
Q 009787 74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP 115 (525)
Q Consensus 74 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~---~~~~~w~~L~~~ 115 (525)
..|.|.|||++..++|+|||++.|++..+. .....||+|.++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 459999999999889999999999999993 346889999874
No 43
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.68 E-value=1.6e-16 Score=135.77 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=86.2
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEEEEcCC
Q 009787 14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI 85 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V~d~d~ 85 (525)
|+|+|+|++|++|+..+.. +.+||||++.+. ...++|+++++++||.|||+|.|.+.. ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 899999999984 345799999999999999999998754 24679999999999
Q ss_pred CCCCceeEEEEEEcccCCCcccEEEEcc
Q 009787 86 IWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (525)
Q Consensus 86 ~~~dd~iG~~~i~l~~l~~~~~~w~~L~ 113 (525)
.++|++||++.+++.++. ....|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~-~~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELI-EDRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHh-cCCCCCccc
Confidence 999999999999999995 235587775
No 44
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.68 E-value=2.3e-16 Score=134.56 Aligned_cols=99 Identities=21% Similarity=0.387 Sum_probs=87.9
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCee-ccEEEEEecCC---CcEEEEEEEEcCCCCCCc
Q 009787 16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST 90 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W-~e~f~~~v~~~---~~~L~~~V~d~d~~~~dd 90 (525)
|.|+|++|++|+.++. .|.+||||++.+++..++|+++.+++||.| ||+|.|.+... ...|.|+|||++..++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6799999999999884 788999999999998999999999999999 99999998653 367999999999999999
Q ss_pred eeEEEEEEcccCCC-----cccEEEEccC
Q 009787 91 VLGSVIVTVESEGQ-----TGAVWYTLDS 114 (525)
Q Consensus 91 ~iG~~~i~l~~l~~-----~~~~w~~L~~ 114 (525)
+||++.+++.++.. ....||+|..
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999832 3567999863
No 45
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.68 E-value=3.2e-16 Score=136.02 Aligned_cols=103 Identities=14% Similarity=0.211 Sum_probs=89.2
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V 80 (525)
.+..+.|.|+|++|+||++++..+.+||||.+++. ...++|+++++++||+|||+|.|.+.. ....|.|+|
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 45678899999999999999888899999999973 236789999999999999999999864 356799999
Q ss_pred EEcCCCCCCceeEEEEEEcccC---CCcccEEEEc
Q 009787 81 YDWDIIWKSTVLGSVIVTVESE---GQTGAVWYTL 112 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l---~~~~~~w~~L 112 (525)
||++..+++++||.+.+++.++ ......||+|
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999999999999999988 2345679876
No 46
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.67 E-value=1.1e-15 Score=133.16 Aligned_cols=109 Identities=24% Similarity=0.356 Sum_probs=91.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC--Ccee
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STVL 92 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~--dd~i 92 (525)
|+|+|++|++|+.++..+.+||||++.++ ...++|+++.+++||.|||+|.|.+.. ...|.|+|||++..++ |++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999999999999999999996 667899999999999999999999976 7789999999998875 5799
Q ss_pred EEEEEEcccCC---CcccEEEEccCC----CceEEEEEEE
Q 009787 93 GSVIVTVESEG---QTGAVWYTLDSP----SGQVCLHIKT 125 (525)
Q Consensus 93 G~~~i~l~~l~---~~~~~w~~L~~~----~G~i~l~i~~ 125 (525)
|++.+++.++. .....|++|... .|.+.+.+.+
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~ 120 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVV 120 (123)
T ss_pred eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEE
Confidence 99999999982 224679999542 2444444443
No 47
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=1e-15 Score=132.65 Aligned_cols=102 Identities=21% Similarity=0.302 Sum_probs=91.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~i 92 (525)
|.|.|+|++|++|+..+..+.+||||.+.+++ ..++|+++.++.||.|||+|.|.+....+.|.|+|||++..++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 68999999999999999899999999999976 45789999999999999999999887778999999999999999999
Q ss_pred EEEEEEcccC-CCcccEEEEccCC
Q 009787 93 GSVIVTVESE-GQTGAVWYTLDSP 115 (525)
Q Consensus 93 G~~~i~l~~l-~~~~~~w~~L~~~ 115 (525)
|++.+++.++ ....+.||.|..+
T Consensus 81 G~~~~~l~~l~~~~~~~~~~~~~~ 104 (120)
T cd04045 81 GSVEINVSDLIKKNEDGKYVEYDD 104 (120)
T ss_pred eEEEEeHHHhhCCCCCceEEecCC
Confidence 9999999998 5566788888653
No 48
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=8.9e-16 Score=133.78 Aligned_cols=113 Identities=20% Similarity=0.389 Sum_probs=93.1
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009787 14 YLIKLELLAAKNLIGANL-NGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST 90 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~~--~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd 90 (525)
|.|.|+|++|++|+..+. .+.+||||.+.++. ...+|+++.++.||.|||.|.|.+......|.|+|||++..++|+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 789999999999997653 56799999999987 678999999999999999999998866788999999999988999
Q ss_pred eeEEEEEEcccC--CCccc-EEEEccC---CCceEEEEEEEE
Q 009787 91 VLGSVIVTVESE--GQTGA-VWYTLDS---PSGQVCLHIKTI 126 (525)
Q Consensus 91 ~iG~~~i~l~~l--~~~~~-~w~~L~~---~~G~i~l~i~~~ 126 (525)
+||.+.+++.++ ..... .|..|.. ..|++++.+++.
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~ 123 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFF 123 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeC
Confidence 999999999998 22222 3444443 246777776664
No 49
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.67 E-value=1e-15 Score=133.63 Aligned_cols=105 Identities=21% Similarity=0.344 Sum_probs=91.1
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYD 82 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V~d 82 (525)
....+.|.|+|++|++|+..+..+.+||||.+.+ +....+|++++++.||.|||+|.|.+.. ....|.++|||
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 4557889999999999999998999999999998 3456799999999999999999997422 23569999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (525)
++..+++++||++.+++.++ +.....|+.|.+
T Consensus 92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 99999999999999999998 566788999864
No 50
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.67 E-value=9.2e-16 Score=134.44 Aligned_cols=105 Identities=17% Similarity=0.312 Sum_probs=88.4
Q ss_pred CCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY 81 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V~ 81 (525)
....+.|.|+|++|++|++++.. +.+||||++.+. .+..+|+++++++||.|||+|.|. +.. ....|.++||
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 45578999999999999998875 899999999984 345689999999999999999994 432 2346999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--C--CcccEEEEccC
Q 009787 82 DWDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDS 114 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l--~--~~~~~w~~L~~ 114 (525)
|+|.++++++||++.+++.++ . .....|.+|++
T Consensus 92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred EcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 999999999999999999998 2 44567888864
No 51
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.66 E-value=4.5e-16 Score=134.53 Aligned_cols=100 Identities=30% Similarity=0.459 Sum_probs=85.6
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC--CCcEEEEEEEEcC
Q 009787 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD 84 (525)
Q Consensus 12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~--~~~~L~~~V~d~d 84 (525)
..+.|.|+|++|+||++++ .|.+||||.+++.. .+++|+++.+++||.|||+|.|.+.. ....|.|+|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4678999999999999998 88999999999852 35689999999999999999999754 3456899999999
Q ss_pred CCC-CCceeEEEEEEcccC--CCcccEEEEc
Q 009787 85 IIW-KSTVLGSVIVTVESE--GQTGAVWYTL 112 (525)
Q Consensus 85 ~~~-~dd~iG~~~i~l~~l--~~~~~~w~~L 112 (525)
... .+++||.+.+++.++ +.....||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 876 478999999999998 4445789976
No 52
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.66 E-value=1e-15 Score=133.52 Aligned_cols=102 Identities=26% Similarity=0.455 Sum_probs=92.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccC-CCCCeeccEEEEEecCC----CcEEEEEEEEcCCCCC
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK 88 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~W~e~f~~~v~~~----~~~L~~~V~d~d~~~~ 88 (525)
|.|.|+|++|++|+..+..+.+||||++.++...++|++..+ +.||.|||+|.|.+..+ ...|.|+|||++..++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 689999999999999998899999999999988889988874 89999999999998775 4679999999999889
Q ss_pred CceeEEEEEEcccC--CCcccEEEEccCC
Q 009787 89 STVLGSVIVTVESE--GQTGAVWYTLDSP 115 (525)
Q Consensus 89 dd~iG~~~i~l~~l--~~~~~~w~~L~~~ 115 (525)
+++||.+.+++.++ ....+.|+.|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999998 5566889999874
No 53
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.66 E-value=1e-15 Score=136.55 Aligned_cols=88 Identities=25% Similarity=0.468 Sum_probs=84.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (525)
|.|.|+|++|++|+..+. +.+||||++.++++..+|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999999887 8999999999999999999999999999999999999888888999999999999999999
Q ss_pred EEEEEcccC
Q 009787 94 SVIVTVESE 102 (525)
Q Consensus 94 ~~~i~l~~l 102 (525)
.+.+++.++
T Consensus 81 ~a~i~l~~l 89 (145)
T cd04038 81 EAEIDLEPL 89 (145)
T ss_pred EEEEEHHHh
Confidence 999999998
No 54
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.66 E-value=1.2e-15 Score=133.64 Aligned_cols=104 Identities=19% Similarity=0.320 Sum_probs=90.4
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~ 81 (525)
.+..+.|.|+|++|+||+..+..+.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.+.||
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 45678999999999999999988999999999985 3567999999999999999999998542 467999999
Q ss_pred EcCCC--CCCceeEEEEEEcccC--CCcccEEEEcc
Q 009787 82 DWDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (525)
Q Consensus 82 d~d~~--~~dd~iG~~~i~l~~l--~~~~~~w~~L~ 113 (525)
|++.. +++++||++.+++.++ +.....||+|.
T Consensus 92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 99875 6899999999999998 45567899884
No 55
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.65 E-value=1.3e-15 Score=132.69 Aligned_cols=102 Identities=20% Similarity=0.372 Sum_probs=89.0
Q ss_pred CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009787 11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~ 81 (525)
...+.|.|+|++|+||+..+ ..+.+||||.+.+.. ..++|++++++.||.|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 45688999999999999998 788999999998731 356899999999999999999997652 457999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009787 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L 112 (525)
|++..+++++||++.++++++ +...+.||+|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999999999999999998 5556889987
No 56
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.65 E-value=1.2e-15 Score=137.05 Aligned_cols=101 Identities=26% Similarity=0.571 Sum_probs=89.2
Q ss_pred CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------EEEeecccCCCC
Q 009787 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----------------------------KRFSSMVPGSRY 58 (525)
Q Consensus 8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-----------------------------~~kT~~~~~t~n 58 (525)
.++++.+.|.|+|++|++|.++|..|.+||||.+.+... .++|+++.+++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 567889999999999999999999999999999998531 257999999999
Q ss_pred CeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC-CCcccEEEEc
Q 009787 59 PMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL 112 (525)
Q Consensus 59 P~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L 112 (525)
|.|||+|.|.+... ...|.|+|||++ +++||++.++++++ +...+.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 99999999998763 567999999997 88999999999998 4567899987
No 57
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.65 E-value=3.3e-16 Score=138.43 Aligned_cols=108 Identities=18% Similarity=0.303 Sum_probs=93.3
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~ 81 (525)
....+.|.|+|++|++|++++..|.+||||.+.+.. ...+|+++.+++||.|||+|.|.+... ...|.|+||
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 345789999999999999999899999999999842 346899999999999999999997642 457999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009787 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (525)
|++..+++++||++.+++...+....+|+++...++
T Consensus 89 d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~ 124 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPD 124 (133)
T ss_pred eCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCC
Confidence 999988999999999999987777788998865444
No 58
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.64 E-value=2.2e-15 Score=131.19 Aligned_cols=105 Identities=20% Similarity=0.321 Sum_probs=90.4
Q ss_pred CCCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d 82 (525)
....+.|.|+|++|++|+.++ ..+.+||||.+++. ....+|+++++++||.|||+|.|.+... ...|.|+|||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 345678999999999999998 68899999999973 3456899999999999999999998642 3579999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (525)
++..+++++||++.+++.++ ......|++|.+
T Consensus 90 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 90 VDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 99988899999999999998 455578999964
No 59
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.64 E-value=1.1e-15 Score=133.59 Aligned_cols=110 Identities=23% Similarity=0.415 Sum_probs=94.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeccc-CCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW 87 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~-~t~nP~W~e~f~~~v~~~-----~~~L~~~V~d~d~~~ 87 (525)
.|+|+|++|++|+..+..+.+||||.+++++ ..++|++.. ++.||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999889999999999987 778898875 589999999999998765 577999999999888
Q ss_pred CCceeEEEEEEcccC--CCc-----ccEEEEccCCCceEEEEEE
Q 009787 88 KSTVLGSVIVTVESE--GQT-----GAVWYTLDSPSGQVCLHIK 124 (525)
Q Consensus 88 ~dd~iG~~~i~l~~l--~~~-----~~~w~~L~~~~G~i~l~i~ 124 (525)
++++||.+.+++.++ ... ...||+|..+.|+..+.|.
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~ 124 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN 124 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence 999999999999998 222 3689999876676665553
No 60
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=2.2e-15 Score=131.31 Aligned_cols=104 Identities=19% Similarity=0.345 Sum_probs=89.3
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD 82 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V~d 82 (525)
....+.|.|+|++|+||++.+..|.+||||.+.+. .++.+|++.++ .||+|||+|.|. +.. ....|.|+|||
T Consensus 12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 45677899999999999999988999999998763 34568988877 999999999998 543 35669999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (525)
++.++++++||++.++++.+ ......|++|++
T Consensus 91 ~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 91 VERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 99999999999999999998 556778999974
No 61
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.64 E-value=5e-16 Score=137.18 Aligned_cols=108 Identities=21% Similarity=0.266 Sum_probs=91.5
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~ 81 (525)
.+....|.|+|++|+||++.+..|.+||||.+++.. .+.+|+++++++||+|||+|.|.+.. ....|.|+||
T Consensus 11 ~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~ 90 (136)
T cd08406 11 LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVA 90 (136)
T ss_pred cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence 355678999999999999999899999999999832 14579999999999999999999864 3566999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009787 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (525)
|+|..+++++||++.+.....+...++|.++....+
T Consensus 91 ~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~ 126 (136)
T cd08406 91 ESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLR 126 (136)
T ss_pred eCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCC
Confidence 999999999999999988777777788888765433
No 62
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.64 E-value=1.9e-15 Score=137.81 Aligned_cols=104 Identities=21% Similarity=0.268 Sum_probs=90.1
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 009787 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY 81 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V~ 81 (525)
.+.|.|.|+|++|+||+..+..+.+||||.+.+. ...++|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 3689999999999999999989999999999872 356789999999999999999998532 2356999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (525)
|++.++++++||++.+++..+ ....+.|+.|.+
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999998999999999999988 445678998864
No 63
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.63 E-value=2.9e-15 Score=130.36 Aligned_cols=93 Identities=19% Similarity=0.372 Sum_probs=82.8
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEec--CCCcEEEEEEEEcCCCC
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIW 87 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~--~~~~~L~~~V~d~d~~~ 87 (525)
....|.|.|+|++|++|+. +..+.+||||.+.+++..++|+++++++||+|||+|.|... .....|.|+|||++..+
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 4557899999999999984 67789999999999988999999999999999999999743 34678999999999999
Q ss_pred CCceeEEEEEEcccCC
Q 009787 88 KSTVLGSVIVTVESEG 103 (525)
Q Consensus 88 ~dd~iG~~~i~l~~l~ 103 (525)
+|++||.+.+++....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 9999999999998663
No 64
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.63 E-value=2.5e-15 Score=128.44 Aligned_cols=99 Identities=23% Similarity=0.490 Sum_probs=86.4
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCC
Q 009787 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDII 86 (525)
Q Consensus 12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-----~~~L~~~V~d~d~~ 86 (525)
.-+.|+|+|++|++|+ .|.+||||.+.+++++++|+++.++.||.|||+|.|.+..+ ...|.|+|||++..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 3578999999999998 57899999999999999999999999999999999997542 35699999999999
Q ss_pred CCCceeEEEEEEcccC--C---CcccEEEEccC
Q 009787 87 WKSTVLGSVIVTVESE--G---QTGAVWYTLDS 114 (525)
Q Consensus 87 ~~dd~iG~~~i~l~~l--~---~~~~~w~~L~~ 114 (525)
+++++||.+.++++.+ . .....|++|..
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8999999999999988 2 23567999863
No 65
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.63 E-value=1.3e-16 Score=157.73 Aligned_cols=103 Identities=25% Similarity=0.499 Sum_probs=92.5
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeecccCCCCCeeccEEEEEecC--CCcEEEEEEEEcC
Q 009787 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD 84 (525)
Q Consensus 12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~W~e~f~~~v~~--~~~~L~~~V~d~d 84 (525)
....|+|+|.+|+||.++|.+|.+||||.+.+ +..+++|++++.++||+|||+|.|.+.+ .+++|.++|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 35578999999999999999999999999997 2446689999999999999999999865 4678999999999
Q ss_pred CCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009787 85 IIWKSTVLGSVIVTVESE-GQTGAVWYTLDS 114 (525)
Q Consensus 85 ~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~ 114 (525)
+.+++||+|...+.++++ ..+.+.||.|..
T Consensus 258 rTsRNDFMGslSFgisEl~K~p~~GWyKlLs 288 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAPVDGWYKLLS 288 (683)
T ss_pred ccccccccceecccHHHHhhcchhhHHHHhh
Confidence 999999999999999999 677789999876
No 66
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=3.5e-15 Score=133.74 Aligned_cols=100 Identities=21% Similarity=0.336 Sum_probs=85.8
Q ss_pred EEEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEec--CCCcEEEE
Q 009787 15 LIKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIV 78 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g--------------~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~--~~~~~L~~ 78 (525)
.|.|+|++|++|+.+|..+ .+||||++.+++...+|+++++++||+|||+|.|.+. .....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999998543 6899999999999999999999999999999999863 34568999
Q ss_pred EEEEcCCCCCCceeEEEEEEcccC-CCcc--------cEEEEccC
Q 009787 79 TIYDWDIIWKSTVLGSVIVTVESE-GQTG--------AVWYTLDS 114 (525)
Q Consensus 79 ~V~d~d~~~~dd~iG~~~i~l~~l-~~~~--------~~w~~L~~ 114 (525)
+|||+|..++|++||.+.+++.++ .... ..|+.|..
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 999999999999999999999988 3332 46777754
No 67
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.62 E-value=1.6e-15 Score=134.53 Aligned_cols=108 Identities=19% Similarity=0.391 Sum_probs=92.1
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009787 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d 82 (525)
+..+.|.|+|++|++|+..+..|.+||||.+.+.. ...+|+++++++||.|+|+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 45678999999999999999999999999999742 24579999999999999999999853 34569999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (525)
Q Consensus 83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (525)
++..+++++||++.+++...+....+|++|...+|+
T Consensus 92 ~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~ 127 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRR 127 (136)
T ss_pred CCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCC
Confidence 999999999999999999876667789998765554
No 68
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=1.7e-14 Score=126.45 Aligned_cols=93 Identities=22% Similarity=0.362 Sum_probs=83.5
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCceeEEEE
Q 009787 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI 96 (525)
Q Consensus 20 i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~dd~iG~~~ 96 (525)
|++|++|+. ..|.+||||++.+++..++|++++++.||.|||+|.|.+.. ....|.|+|||++..+++++||.+.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 689999988 68899999999999988999999999999999999999864 3677999999999998999999999
Q ss_pred EEcccC--CCcccEEEEccC
Q 009787 97 VTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 97 i~l~~l--~~~~~~w~~L~~ 114 (525)
++++++ +.....|++|..
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~ 99 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLD 99 (127)
T ss_pred EEhhHcccCCceEEEEeCcC
Confidence 999998 455577999964
No 69
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.61 E-value=1.1e-15 Score=135.54 Aligned_cols=107 Identities=28% Similarity=0.430 Sum_probs=91.9
Q ss_pred CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEE
Q 009787 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI 80 (525)
Q Consensus 9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V 80 (525)
.++..+.|.|+|++|++|+.++..|.+||||.+.+. + ..++|+++++++||.|||+|.|.+... ...|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 456778999999999999999999999999999984 2 345799999999999999999997642 24699999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCC
Q 009787 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSP 115 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~ 115 (525)
||++.++++++||.+.+++...+....+|+++...
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~ 124 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLAS 124 (136)
T ss_pred EeCCCCCCCceeEEEEECCccCChHHHHHHHHHhC
Confidence 99999999999999999998877667788887653
No 70
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=8.1e-15 Score=126.03 Aligned_cols=102 Identities=26% Similarity=0.483 Sum_probs=90.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd~iG 93 (525)
|+|+|++|++|+..+..+.+||||++.+.+ ..++|+++.++.+|.|||+|.|.+.. ..+.|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999999888999999999965 44689999999999999999999875 4677999999999988999999
Q ss_pred EEEEEcccC--CCcccEEEEccCCCc
Q 009787 94 SVIVTVESE--GQTGAVWYTLDSPSG 117 (525)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~~G 117 (525)
++.+++.++ +...+.|++|.+++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~g~ 106 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQGG 106 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCCCC
Confidence 999999997 556688999987544
No 71
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.60 E-value=1.8e-15 Score=133.55 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=88.6
Q ss_pred CCCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVT 79 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~ 79 (525)
.+..+.|.|.|++|+||++++. .+.+||||++++.. .+++|+++++++||+|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 4567889999999999999983 35599999999753 245799999999999999999998652 4569999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009787 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS 114 (525)
Q Consensus 80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~ 114 (525)
|||+|..+++++||++.+++...+....+|.++..
T Consensus 91 V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~ 125 (138)
T cd08407 91 VLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLD 125 (138)
T ss_pred EEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHh
Confidence 99999999999999999999877666777877654
No 72
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.60 E-value=5.3e-15 Score=131.11 Aligned_cols=99 Identities=20% Similarity=0.411 Sum_probs=87.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEeecccCCCCCeeccEEEEEecCC----------------CcE
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ 75 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~~~~t~nP~W~e~f~~~v~~~----------------~~~ 75 (525)
|.|+|++|++|+.+ ..|.+||||.+.++ ...++|+++.++.+|.|+|+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999998 6778999999999999999999997553 457
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787 76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (525)
Q Consensus 76 L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~ 115 (525)
|.|+|||++..++++|||++.+++.++ ......|++|.++
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999988999999999999997 4456889999874
No 73
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=1.8e-14 Score=124.13 Aligned_cols=105 Identities=29% Similarity=0.437 Sum_probs=85.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCce
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTV 91 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~dd~ 91 (525)
|.|+|++|++|+.. +.+||||.+.+++.. ++|+++.+ .||.|||+|.|.+.. ....|.+.+||.+....+.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 789999999998754 68999988 999999999999876 34568888999887767778
Q ss_pred eEEEEEEcccCCCcccEEEEccCC------CceEEEEEE
Q 009787 92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK 124 (525)
Q Consensus 92 iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~i~ 124 (525)
+|.+.+.....+...+.||+|.+. .|++++.++
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 116 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR 116 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence 887777666667777899999863 366666654
No 74
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.59 E-value=3.3e-15 Score=132.51 Aligned_cols=109 Identities=26% Similarity=0.413 Sum_probs=92.3
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~ 81 (525)
.+..+.|.|+|++|++|+..+..|.+||||++.+. + ...+|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 11 ~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~ 90 (136)
T cd08405 11 NPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVM 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 35578899999999999999989999999999973 2 24589999999999999999999753 2457999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (525)
|++..+++++||++.+++...+.....|+++...+|+
T Consensus 91 d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~ 127 (136)
T cd08405 91 DKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQ 127 (136)
T ss_pred ECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCC
Confidence 9999999999999999999887667788888654443
No 75
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.59 E-value=4.1e-15 Score=131.54 Aligned_cols=109 Identities=23% Similarity=0.406 Sum_probs=91.4
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~ 81 (525)
.+..+.|+|+|++|++|++++..|.+||||.+.+.. ...+|+++.+++||.|+|+|.|.+... ...|.|+||
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~ 89 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVV 89 (134)
T ss_pred cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 356789999999999999999999999999999742 245888889999999999999997542 245999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (525)
|++..+++++||.+.+++...+.....|+++...+|+
T Consensus 90 d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~ 126 (134)
T cd08403 90 DYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRK 126 (134)
T ss_pred ECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCC
Confidence 9999999999999999988666666789888654443
No 76
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.58 E-value=1.3e-14 Score=128.23 Aligned_cols=92 Identities=22% Similarity=0.419 Sum_probs=81.8
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeecccCCCCCeeccEEEEEecC-----CCcEEEEE
Q 009787 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVT 79 (525)
Q Consensus 12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~~~~~t~nP~W~e~f~~~v~~-----~~~~L~~~ 79 (525)
..+.|.|+|++|++|+..+..|.+||||++++. ...++|+++++++||.|||+|.|.+.. ....|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 457899999999999999988999999999985 345789999999999999999999864 24579999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCC
Q 009787 80 IYDWDIIWKSTVLGSVIVTVESEG 103 (525)
Q Consensus 80 V~d~d~~~~dd~iG~~~i~l~~l~ 103 (525)
|||++..+++++||++.++++++.
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCC
Confidence 999999988999999999999883
No 77
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.58 E-value=1.6e-14 Score=127.18 Aligned_cols=105 Identities=27% Similarity=0.493 Sum_probs=91.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC--CcEEEEEEEEcCCC
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDII 86 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~--~~~L~~~V~d~d~~ 86 (525)
+.|+|+|++|++|+..+..+.+||||.+.+. ...++|+++.++.+|.|||+|.|.+... ...|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 8899999999999999888899999999985 3567899999999999999999997653 46799999999988
Q ss_pred CCCceeEEEEEEcccC-CCcccEEEEccC-CCce
Q 009787 87 WKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ 118 (525)
Q Consensus 87 ~~dd~iG~~~i~l~~l-~~~~~~w~~L~~-~~G~ 118 (525)
+++++||++.+++.++ ......||+|.. +.|+
T Consensus 93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~ 126 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE 126 (131)
T ss_pred CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence 8999999999999998 446678999976 3353
No 78
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.58 E-value=5.6e-15 Score=130.78 Aligned_cols=109 Identities=22% Similarity=0.440 Sum_probs=90.0
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-C----eEEEeecccCCCCCeeccEEEEEecC--C-CcEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-S----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIY 81 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-~----~~~kT~~~~~t~nP~W~e~f~~~v~~--~-~~~L~~~V~ 81 (525)
.+..+.|.|+|++|++|+..+..|.+||||.+.+. + ..++|+++++++||.|||+|.|.+.. . ...|.|+||
T Consensus 10 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~ 89 (135)
T cd08410 10 LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVY 89 (135)
T ss_pred CCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEE
Confidence 35668999999999999999999999999999972 2 34689999999999999999999853 2 336999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCce
Q 009787 82 DWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQ 118 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~-~~~~w~~L~~~~G~ 118 (525)
|+|..+++++||++.+.....+. ..++|+.|....|+
T Consensus 90 d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~ 127 (135)
T cd08410 90 GHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRT 127 (135)
T ss_pred eCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCC
Confidence 99999999999999887766643 45789888765443
No 79
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.57 E-value=5.8e-14 Score=125.88 Aligned_cols=112 Identities=14% Similarity=0.191 Sum_probs=89.4
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeEEEeecccCCCCCeeccEEEEEecCC---------CcEEEEE
Q 009787 16 IKLELLAAKN--LIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVT 79 (525)
Q Consensus 16 L~V~i~~A~~--L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~W~e~f~~~v~~~---------~~~L~~~ 79 (525)
..++|..|++ |++.+..+.+||||.+++ ..+..+|+++++|+||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455666666 777777888999999986 24577999999999999999999998653 3459999
Q ss_pred EEEcCCC-CCCceeEEEEEEcccC--CCcccEEEEccC----CCceEEEEEEEEe
Q 009787 80 IYDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTIK 127 (525)
Q Consensus 80 V~d~d~~-~~dd~iG~~~i~l~~l--~~~~~~w~~L~~----~~G~i~l~i~~~~ 127 (525)
|||++.+ .+|++||++.++|+.+ ......|++|.. .+|++.+.+++..
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 9999986 4799999999999999 445667999863 3477777777763
No 80
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.56 E-value=6.4e-15 Score=130.66 Aligned_cols=109 Identities=19% Similarity=0.341 Sum_probs=91.9
Q ss_pred CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEE
Q 009787 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT 79 (525)
Q Consensus 9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~ 79 (525)
.+...+.|.|+|++|+||++++..|.+||||++.+.. .+++|+++++++||+|||+|.|.+.. ....|.|+
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 3466789999999999999999899999999999732 24589999999999999999999864 34579999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCc
Q 009787 80 IYDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSG 117 (525)
Q Consensus 80 V~d~d~~~~dd~iG~~~i~l~~l~~-~~~~w~~L~~~~G 117 (525)
|||.+..+++++||++.+++...+. ...+|+.+...++
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~ 128 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKG 128 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCC
Confidence 9999999999999999999887753 4578988865433
No 81
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=3.8e-14 Score=123.58 Aligned_cols=89 Identities=24% Similarity=0.492 Sum_probs=79.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~--~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd~ 91 (525)
+|+|+|++|++|+.++..|.+||||++.+++.. .+|+++++++||.|||+|.|.+.. ....|.|+|||++..++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 478999999999999999999999999998765 468888899999999999999754 35679999999999999999
Q ss_pred eEEEEEEcccCC
Q 009787 92 LGSVIVTVESEG 103 (525)
Q Consensus 92 iG~~~i~l~~l~ 103 (525)
||++.+++++..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999773
No 82
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.55 E-value=9.3e-14 Score=122.64 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=82.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEEEeecccCCCCCee-ccEEEEEecCCCcEEEEEE
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-------------EKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI 80 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-------------~~~kT~~~~~t~nP~W-~e~f~~~v~~~~~~L~~~V 80 (525)
+..|++++|++|+ ++..|.+||||.+.+.. +.++|+++.+++||+| ||+|.|.+.. ...|.++|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 4679999999998 77889999999999842 3579999999999999 9999999864 56899999
Q ss_pred EEcCCCCC---CceeEEEEEEcccCC-----CcccEEEEccCC
Q 009787 81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP 115 (525)
Q Consensus 81 ~d~d~~~~---dd~iG~~~i~l~~l~-----~~~~~w~~L~~~ 115 (525)
||++..+. +++||++.+++.++. .....|++|...
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 99875443 799999999999982 225579998753
No 83
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.55 E-value=1.4e-14 Score=126.19 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=87.4
Q ss_pred CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCC-CCeeccEEEEEecCC--CcEEEEEE
Q 009787 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDEL--PVQIIVTI 80 (525)
Q Consensus 9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~-nP~W~e~f~~~v~~~--~~~L~~~V 80 (525)
..++.+.|+|+|++|+||+++...+.+||||++++. -.+++|+++++++ +|.|||+|.|++... ...|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 357789999999999999998666778999999973 1356899999996 699999999998643 34588999
Q ss_pred EEcCCCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009787 81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLDS 114 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~ 114 (525)
||++..+++++||++.+..+.. +...++|.+...
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~ 123 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIA 123 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCchhhhhHHHHHh
Confidence 9999999999999999999875 445678877644
No 84
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.55 E-value=2.4e-14 Score=124.15 Aligned_cols=96 Identities=16% Similarity=0.245 Sum_probs=82.4
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCeE-------EEeecccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCC----C
Q 009787 19 ELLAAKNLIGANLNGTSDPYAIITCGSEK-------RFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----I 86 (525)
Q Consensus 19 ~i~~A~~L~~~d~~g~~DPyv~v~~~~~~-------~kT~~~~~t~nP~W~e~f~~~v~-~~~~~L~~~V~d~d~----~ 86 (525)
-.++|++|+..+..|.+||||++++.... ++|+++++++||.|+|+|.|.+. +....|.|+|||+|. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 34889999999999999999999986543 68999999999999999999853 346679999999997 7
Q ss_pred CCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787 87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 87 ~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (525)
+++++||++.+++.++ ......|++|.+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 8999999999999998 455667888843
No 85
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.55 E-value=9.4e-14 Score=121.24 Aligned_cols=98 Identities=16% Similarity=0.278 Sum_probs=83.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (525)
.|.|+|++|+ |...+..+.+||||.+.+++. .++|+++.++++|.|||+|.|.+.+ ...|.|+|||++..+.+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEE
Confidence 6899999998 555555889999999999877 7899999999999999999999865 678999999999999999999
Q ss_pred EEEEEcccCC-----Cc--ccEEEEccC
Q 009787 94 SVIVTVESEG-----QT--GAVWYTLDS 114 (525)
Q Consensus 94 ~~~i~l~~l~-----~~--~~~w~~L~~ 114 (525)
++.+++.++. .. ...|++|..
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~ 108 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSS 108 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEc
Confidence 9999999871 11 234888853
No 86
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.55 E-value=1e-14 Score=128.86 Aligned_cols=108 Identities=26% Similarity=0.440 Sum_probs=93.2
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009787 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-----~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d 82 (525)
+..+.|.|+|++|++|+..+..+.+||||.+.+... .++|+++.++.||.|||+|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 446789999999999999998899999999998532 45899999999999999999998653 4679999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (525)
Q Consensus 83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (525)
++..+++++||.+.+++++.+...++|++|...+|+
T Consensus 91 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK 126 (134)
T ss_pred cCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCC
Confidence 998889999999999999976677889999765443
No 87
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.54 E-value=1.3e-13 Score=122.33 Aligned_cols=97 Identities=24% Similarity=0.284 Sum_probs=83.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEE-EeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC----
Q 009787 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW---- 87 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~-kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~---- 87 (525)
-..|.|.|++|++|++++ +|||.+.+++... ||+++.++.||.|+|+|.|........|.|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 456899999999998865 7999999999885 999999999999999999987666788999999765322
Q ss_pred CCceeEEEEEEcccC--CCcccEEEEccC
Q 009787 88 KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 88 ~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (525)
++++||.+.|++..+ +...+.||+|.+
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~ 113 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVST 113 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence 578999999999999 566789999976
No 88
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.53 E-value=7.1e-14 Score=118.57 Aligned_cols=81 Identities=15% Similarity=0.339 Sum_probs=70.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEc-------
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW------- 83 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~------- 83 (525)
|.|+|++|+||+ +.+||||.+.++. ...+|+++.+++||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 679999999995 5699999998853 35799999999999999999999975 77899999998
Q ss_pred CCCCCCceeEEEEEEcccC
Q 009787 84 DIIWKSTVLGSVIVTVESE 102 (525)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l 102 (525)
|..++|+++|.+.+.++.-
T Consensus 75 d~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred cccCcccEEEEEEEEECHH
Confidence 5667899999999988754
No 89
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=1.4e-13 Score=117.57 Aligned_cols=96 Identities=20% Similarity=0.330 Sum_probs=81.6
Q ss_pred CCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCc
Q 009787 31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT 105 (525)
Q Consensus 31 ~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l---~~~ 105 (525)
.+|.+||||.+.++++ .++|+++.++.||.|||.|.|.+.+. ...|.|.|||++.. ++++||.+.++|.++ ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 4788999999999875 46899999999999999999998764 46699999999988 899999999999987 233
Q ss_pred ccEEEEccC-CCceEEEEEEEEe
Q 009787 106 GAVWYTLDS-PSGQVCLHIKTIK 127 (525)
Q Consensus 106 ~~~w~~L~~-~~G~i~l~i~~~~ 127 (525)
...||+|.+ +.|++++++.+.+
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 578999974 4688888877764
No 90
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3e-14 Score=146.62 Aligned_cols=120 Identities=29% Similarity=0.496 Sum_probs=106.6
Q ss_pred CCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC
Q 009787 7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII 86 (525)
Q Consensus 7 ~~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~ 86 (525)
+++......++++|++|.+|.++|..|++||||...++..+.+|+++...+||+|||.|.|++++...+|++.|||.|..
T Consensus 288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~d 367 (1283)
T KOG1011|consen 288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDND 367 (1283)
T ss_pred ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCccc
Confidence 34556677899999999999999999999999999999999999999999999999999999999899999999999853
Q ss_pred -----------CCCceeEEEEEEcccCCCcccEEEEccCC------CceEEEEEEEE
Q 009787 87 -----------WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTI 126 (525)
Q Consensus 87 -----------~~dd~iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~i~~~ 126 (525)
.+|||+|++.|.+..+....+.||.|..+ .|.|.++|.++
T Consensus 368 lksklrqkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEE
Confidence 36899999999999998888999999762 37777777765
No 91
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.51 E-value=2e-13 Score=118.83 Aligned_cols=102 Identities=19% Similarity=0.291 Sum_probs=85.5
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTI 80 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V 80 (525)
.+..+.|.|+|++|++|++.+..+.+||||++.+. ....+|+++.++.||.|||+|.|. +.. ....|.|+|
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 34568899999999999999988999999999973 235789999999999999999996 332 246799999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 009787 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL 112 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L 112 (525)
||++.. .+++||.+.++++++......|+.+
T Consensus 91 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 91 LDEDRF-GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEcCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence 999988 8899999999999996555555543
No 92
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.51 E-value=4.3e-14 Score=125.42 Aligned_cols=105 Identities=18% Similarity=0.285 Sum_probs=87.7
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~ 81 (525)
.+..+.|.|+|++|+||++.+ .+.+||||.+.+.. .+++|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 11 NPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 345688999999999999998 88899999999742 35589999999999999999999853 2356999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~ 115 (525)
|.+..+++++||++.+..... +...++|.++...
T Consensus 90 ~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 90 QSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred eCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 999999999999999987544 5556788887653
No 93
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.49 E-value=2.5e-14 Score=153.38 Aligned_cols=480 Identities=22% Similarity=0.258 Sum_probs=283.4
Q ss_pred CCCCCCCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEE
Q 009787 2 VQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTI 80 (525)
Q Consensus 2 ~~~~~~~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V 80 (525)
+.+++......++......+.+.++..-..++.++||..+.+............+.+|.|++.+.|+-.. +-....+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIp 164 (590)
T KOG1032|consen 85 GGLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIP 164 (590)
T ss_pred CCCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEe
Confidence 3456667777788888888888888777777789999999988888888888899999999999998332 234455666
Q ss_pred EEcCCC-CCCceeEEEEEEccc-CCCcccEEEEccCCCceEE---EEEEEEecccCCccccccccccccccccccccCCC
Q 009787 81 YDWDII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP 155 (525)
Q Consensus 81 ~d~d~~-~~dd~iG~~~i~l~~-l~~~~~~w~~L~~~~G~i~---l~i~~~~~~~~~~~~i~~~l~~~~~~~l~v~~~~~ 155 (525)
++++.. .+..-.|.+...+.. .......|..|..+.+... +.++-........+....++..+...-- -..+.+
T Consensus 165 f~eI~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~-~~~~~~ 243 (590)
T KOG1032|consen 165 FDEITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVN-DDQQGN 243 (590)
T ss_pred eeeeeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcC-cccccc
Confidence 665532 122223333222221 2455677888887666544 3444444444444555556654432211 011345
Q ss_pred ceecccCcccceeeecCCcceeEeeeeeeeecccccceeEEEeCCeEEEEecCCCceeEEEEeecccee-cccc-ccccC
Q 009787 156 TVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQH-AFINP 233 (525)
Q Consensus 156 ~~~~~k~~~f~~lF~lp~~E~l~~~~~c~l~~~~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~~-~~~~~ 233 (525)
.+....+.++...|++|.+|.+..+++|.+.+.++++|+++++....+|++.+||..+.+...+++++. +... .....
T Consensus 244 ~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~ 323 (590)
T KOG1032|consen 244 VDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGP 323 (590)
T ss_pred cccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCC
Confidence 566778899999999999999999999999999999999999999999999999999999999999999 3222 22222
Q ss_pred c--EEEE-EecCCCCCCCCCCCCC--CCceeEEEeeeechHHHHHHHHHHHHhhccCchHHHHhhhhhhhhcCCCCCCCC
Q 009787 234 A--ITII-LRMGAGGHGVPPLGSP--DGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGS 308 (525)
Q Consensus 234 ~--i~i~-~~~~~~~~~~~~~~~~--~~~~~~~f~sf~~rd~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~ 308 (525)
. +... ..-+.++++..+.... .+...+.|.++... ++++.+.........+......+..-.+.++.+...
T Consensus 324 ~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l- 399 (590)
T KOG1032|consen 324 RSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKL- 399 (590)
T ss_pred CccceeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCcceee-
Confidence 2 2222 2222234444433333 35666666666432 455444433322211100000000000000000000
Q ss_pred cccccccccccCCCCCCCCCccccccceeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcE
Q 009787 309 RRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQV 388 (525)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~ 388 (525)
.+..... ..+ .+ -...|.++.....++.++. |+-+|+ +..-...-+...+...+.-++|+ .+..++..
T Consensus 400 ----~v~~~V~-~~~--~s--w~~~~~~~~~~~~k~lv~~-~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-v~~~~~~v 467 (590)
T KOG1032|consen 400 ----KVSTSVE-WTK--SS--WDVPVSEIGSNTLKDLVEI-LEKLLE-NGEELAKNQEKEDELTYEGSPWE-VEKPGGTV 467 (590)
T ss_pred ----cceeEEE-ecc--Cc--hhhccccccccchhhHHHH-HHHHHh-ccHHHHHhhcccccccccCCCcc-ccCCCcee
Confidence 0000000 000 00 0001111111233444443 466666 44444444444455556666899 66668899
Q ss_pred EEEEEEeecCCCCCCcceeEeEEEEEEecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCC----CceEEEEEEee
Q 009787 389 REVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAE----NSSTIDIKVVS 464 (525)
Q Consensus 389 R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~----~~~~l~v~~~~ 464 (525)
|...|..--..++++....++..|..........+.+...+..+++|||++|.++.||. ..... ..+.+.++
T Consensus 468 ~~~~~~~~~~~~i~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~-~~~~~~~~v~~~~~~~~--- 543 (590)
T KOG1032|consen 468 RQLSYKEVWNKPISPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR-EALDETSKVKTTLVWVS--- 543 (590)
T ss_pred eeeccccccccccccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh-hhhcccchhhhhhHHHH---
Confidence 99888864556788888888888888776655789999999999999999999999997 22221 22223333
Q ss_pred eeEEEeecceeeeeeeechHHHHHHHHHHHHHHHHHHHhhcC
Q 009787 465 AGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICT 506 (525)
Q Consensus 465 ~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (525)
..|.|.+ +..++.+.........+.+++++...++...
T Consensus 544 ~~~~~l~----~~~~~~~~~k~~~r~~~~~l~~~~~~l~~~~ 581 (590)
T KOG1032|consen 544 FRIEWLK----DIKMEARKIKQILRNDQDLLEVLFSLLEKLS 581 (590)
T ss_pred HHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 3344444444444555555555555444433
No 94
>PLN03008 Phospholipase D delta
Probab=99.49 E-value=2.3e-13 Score=147.63 Aligned_cols=118 Identities=19% Similarity=0.346 Sum_probs=97.6
Q ss_pred ceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCeE-EE
Q 009787 13 AYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSEK-RF 49 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~------------------------------------------~g~~DPyv~v~~~~~~-~k 49 (525)
.|.|.++|.+|++|+.+|. .+++||||++.+++.+ .+
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 5789999999999985331 2467999999998764 58
Q ss_pred eecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEE
Q 009787 50 SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVC 120 (525)
Q Consensus 50 T~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~ 120 (525)
|+++.+++||+|||+|.|.+..+...|.|+|||+|.++ +++||++.|++.++ +...+.|++|... .++++
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~ 171 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIF 171 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEE
Confidence 99999999999999999999887889999999999996 58999999999999 5667899999651 25677
Q ss_pred EEEEEEecccC
Q 009787 121 LHIKTIKLPVN 131 (525)
Q Consensus 121 l~i~~~~~~~~ 131 (525)
+++++......
T Consensus 172 v~lqf~pv~~~ 182 (868)
T PLN03008 172 IDMKFTPFDQI 182 (868)
T ss_pred EEEEEEEcccc
Confidence 77777765433
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.48 E-value=1.9e-13 Score=116.48 Aligned_cols=94 Identities=21% Similarity=0.368 Sum_probs=78.6
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------EEEeecccCCCCCeeccEEEEEecC-----CCcEEEEEEEEcCCC
Q 009787 18 LELLAAKNLIGANLNGTSDPYAIITCGSE------KRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVTIYDWDII 86 (525)
Q Consensus 18 V~i~~A~~L~~~d~~g~~DPyv~v~~~~~------~~kT~~~~~t~nP~W~e~f~~~v~~-----~~~~L~~~V~d~d~~ 86 (525)
+-.++|++|+.++..|.+||||++++... .++|+++++++||.|| +|.|.+.. ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 44569999999999999999999997543 4689999999999999 78887532 256899999999999
Q ss_pred CCCceeEEEEEEcccCCCcccEEEEc
Q 009787 87 WKSTVLGSVIVTVESEGQTGAVWYTL 112 (525)
Q Consensus 87 ~~dd~iG~~~i~l~~l~~~~~~w~~L 112 (525)
++|++||++.++++++......++.+
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~~~ 108 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEFEL 108 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence 99999999999999996555555554
No 96
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.48 E-value=1.1e-12 Score=114.93 Aligned_cols=102 Identities=23% Similarity=0.369 Sum_probs=85.1
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEEEeecccCCC-CCeeccEEEEEecCCC-cEEEEEEEEc
Q 009787 14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITC------GSEKRFSSMVPGSR-YPMWGEEFNFSVDELP-VQIIVTIYDW 83 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d--~~g~~DPyv~v~~------~~~~~kT~~~~~t~-nP~W~e~f~~~v~~~~-~~L~~~V~d~ 83 (525)
..|+|+|++|++|+..+ ..+.+||||.+++ .....+|+++.++. ||.|+|+|.|.+..+. ..|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 47999999999999888 5789999999998 34557899887765 9999999999976543 4699999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009787 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (525)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (525)
+.. ++++||.+.++++++.. ...|++|..+.|
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~-g~~~~~l~~~~~ 113 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ-GYRHVPLLDSKG 113 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC-ceEEEEecCCCC
Confidence 988 89999999999999943 356889865443
No 97
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=8.6e-13 Score=137.70 Aligned_cols=159 Identities=19% Similarity=0.245 Sum_probs=117.3
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEc
Q 009787 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW 83 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~ 83 (525)
......|.|+|++|++|+.++..|.+||||.+++.. .+.+|++.++++||.|||+|.|.+.. ..+.|.+.|||.
T Consensus 163 d~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~ 242 (421)
T KOG1028|consen 163 DFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDF 242 (421)
T ss_pred cccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEec
Confidence 344568999999999999999778899999999853 45689999999999999999999643 367799999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEEecccCCccccccccccccccccccccCC
Q 009787 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQG 154 (525)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~i~~~~~~~~~~~~i~~~l~~~~~~~l~v~~~~ 154 (525)
|+++++++||++.+++..+ ......|.+|.+. .|++.+.+.+...... +... -++.+.+.
T Consensus 243 drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~--------ltv~---v~kar~L~ 311 (421)
T KOG1028|consen 243 DRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGR--------LTVV---VIKARNLK 311 (421)
T ss_pred CCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCe--------EEEE---EEEecCCC
Confidence 9999999999999998887 3335789999762 2577777777654111 0000 11233344
Q ss_pred CceecccCcccceeeecCCcceeEe
Q 009787 155 PTVVHQKPGPLQTIFNLLPDEFVEL 179 (525)
Q Consensus 155 ~~~~~~k~~~f~~lF~lp~~E~l~~ 179 (525)
..+..+.+++|-+..-++.+.++..
T Consensus 312 ~~~~~~~~d~~Vk~~l~~~~~~~~k 336 (421)
T KOG1028|consen 312 SMDVGGLSDPYVKVTLLDGDKRLSK 336 (421)
T ss_pred cccCCCCCCccEEEEEecCCceeee
Confidence 4455556667777776666644443
No 98
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.46 E-value=9.7e-14 Score=107.80 Aligned_cols=61 Identities=31% Similarity=0.658 Sum_probs=44.7
Q ss_pred ccceeeecCCcceeEeeeeeeeec-ccccceeEEEeCCeEEEEecCCCcee-EEEEeecccee
Q 009787 164 PLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDE 224 (525)
Q Consensus 164 ~f~~lF~lp~~E~l~~~~~c~l~~-~~~~~Grlyis~~~~~F~s~~~g~~~-~~~i~~~~i~~ 224 (525)
.|+++|+||.+|.|+.+|.|++.. .++.+|+||||.+++||+|+.++..+ ++.|||.||..
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~ 64 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKS 64 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEE
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeE
Confidence 689999999999999999999999 89999999999999999999999888 99999999988
No 99
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=2.2e-13 Score=160.57 Aligned_cols=113 Identities=20% Similarity=0.323 Sum_probs=98.5
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEecCCC--cEEEEEEEEcCCCC
Q 009787 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELP--VQIIVTIYDWDIIW 87 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~~~~--~~L~~~V~d~d~~~ 87 (525)
+-.|.|.|+|++|+||. +..|.+||||++.++++ +.||++++++.||+|||+|.|.+.+++ ..|+|+|||+|.++
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence 44799999999999998 44799999999999965 778999999999999999998887755 67999999999985
Q ss_pred CCceeEEEEEEcccC--CCcccEEEEccC---CCce---EEEEEEEE
Q 009787 88 KSTVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI 126 (525)
Q Consensus 88 ~dd~iG~~~i~l~~l--~~~~~~w~~L~~---~~G~---i~l~i~~~ 126 (525)
+| .||.+.+++.++ +.....||+|.+ +.|+ +.++++|.
T Consensus 2055 kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2055 KS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 55 899999999998 566778999985 6788 88888775
No 100
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.34 E-value=2.6e-12 Score=97.19 Aligned_cols=55 Identities=35% Similarity=0.680 Sum_probs=52.6
Q ss_pred ecCCcceeEeeeeeeeecccccceeEEEeCCeEEEEecCCCcee-EEEEeecccee
Q 009787 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDE 224 (525)
Q Consensus 170 ~lp~~E~l~~~~~c~l~~~~~~~Grlyis~~~~~F~s~~~g~~~-~~~i~~~~i~~ 224 (525)
+||++|.|+.+|.|+|.+.++++||||||++++||+|+.+|+.+ +++||+.+|..
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~ 56 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITR 56 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeE
Confidence 37899999999999999999999999999999999999999999 99999999988
No 101
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.33 E-value=8.5e-12 Score=100.33 Aligned_cols=81 Identities=26% Similarity=0.491 Sum_probs=72.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeecccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCCCCCCce
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWKSTV 91 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~W~e~f~~~v~-~~~~~L~~~V~d~d~~~~dd~ 91 (525)
|+|+|++|++|+..+..+.+||||.+.+.. ..++|+++.++.+|.|+|+|.|.+. .....|.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999976 6789999999999999999999964 345559999999999988999
Q ss_pred eEEEE
Q 009787 92 LGSVI 96 (525)
Q Consensus 92 iG~~~ 96 (525)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99874
No 102
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.30 E-value=5.6e-12 Score=132.10 Aligned_cols=115 Identities=23% Similarity=0.378 Sum_probs=103.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG 93 (525)
.|.|+|.+|+||++.+..|.+||||.+.++++. .||.++.+++.|-|.|+|.|+++..-+.|.|.|||+| +++|+.||
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IG 84 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIG 84 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccc
Confidence 588999999999999999999999999998765 5999999999999999999999988888999999999 89999999
Q ss_pred EEEEEcccC--CCcccEEEEccC------CCceEEEEEEEEeccc
Q 009787 94 SVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKLPV 130 (525)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~------~~G~i~l~i~~~~~~~ 130 (525)
.+.|.-.++ .+..+.|+.|.+ -.|++++++++.....
T Consensus 85 Kvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 85 KVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ 129 (800)
T ss_pred eeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence 999998888 567899999976 3489999988876543
No 103
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.21 E-value=1.4e-10 Score=95.37 Aligned_cols=97 Identities=30% Similarity=0.574 Sum_probs=84.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd~iG 93 (525)
|.|+|++|++|......+..+|||.+.+.. ...+|.+..++.||.|++.|.|.+.. ....|.|+||+.+..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 578999999998877778899999999987 78899999999999999999999876 6778999999999888889999
Q ss_pred EEEEEcccCC---CcccEEEEc
Q 009787 94 SVIVTVESEG---QTGAVWYTL 112 (525)
Q Consensus 94 ~~~i~l~~l~---~~~~~w~~L 112 (525)
.+.+++..+. .....|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999874 445667764
No 104
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.13 E-value=4.5e-10 Score=92.71 Aligned_cols=88 Identities=24% Similarity=0.516 Sum_probs=78.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~---~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd 90 (525)
.|.|+|++|++|......+..+|||.+.+... ..+|+++.++.+|.|+++|.|.+... ...|.|+|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 37899999999998876678999999999764 68999999999999999999998876 788999999999887789
Q ss_pred eeEEEEEEcccC
Q 009787 91 VLGSVIVTVESE 102 (525)
Q Consensus 91 ~iG~~~i~l~~l 102 (525)
++|.+.+++.++
T Consensus 81 ~~G~~~~~l~~~ 92 (101)
T smart00239 81 FIGQVTIPLSDL 92 (101)
T ss_pred eeEEEEEEHHHc
Confidence 999999998887
No 105
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.08 E-value=7e-10 Score=96.82 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=73.8
Q ss_pred EEEEEEEeecCCCCC--CCCC--CCcEEEEEECC---eEEEeecccCCCC--CeeccEEEEEecC---------------
Q 009787 16 IKLELLAAKNLIGAN--LNGT--SDPYAIITCGS---EKRFSSMVPGSRY--PMWGEEFNFSVDE--------------- 71 (525)
Q Consensus 16 L~V~i~~A~~L~~~d--~~g~--~DPyv~v~~~~---~~~kT~~~~~t~n--P~W~e~f~~~v~~--------------- 71 (525)
|+|.|.+|++++..+ ..|. +||||+..+.. ..++|.+..+++| |.||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966543 4664 99999999864 5578999999999 9999999988543
Q ss_pred ---------CCcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009787 72 ---------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (525)
Q Consensus 72 ---------~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l 102 (525)
....|.++|||.|.+++|++||.+++++..+
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l 121 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSIL 121 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhc
Confidence 1345999999999999999999999999988
No 106
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1e-09 Score=114.82 Aligned_cols=104 Identities=25% Similarity=0.424 Sum_probs=84.7
Q ss_pred CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEE
Q 009787 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI 80 (525)
Q Consensus 9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V 80 (525)
..+..|.|+|.|++|++|+.++..+.+||||++.+. . .+++|.++++++||+|||+|.|.+... ...|.|+|
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 346689999999999999999999999999999963 2 345799999999999999999988642 34599999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 009787 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL 112 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L 112 (525)
||+|.++.+++||.+.+....-+....+|.+.
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m 404 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDSTGEEVRHWQEM 404 (421)
T ss_pred EEcccccccceeeEEEecCCCCchHHHHHHHH
Confidence 99999999999999888777533333445443
No 107
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.96 E-value=1.7e-10 Score=120.85 Aligned_cols=119 Identities=28% Similarity=0.502 Sum_probs=96.0
Q ss_pred CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eE---------------------------EEeecccCC
Q 009787 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EK---------------------------RFSSMVPGS 56 (525)
Q Consensus 8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~----~~---------------------------~kT~~~~~t 56 (525)
+..++...+.|-+.+|++|.++|.+|.+|||+.+.+.. .. +-|+++++|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 44566778889999999999999999999999987510 00 027889999
Q ss_pred CCCeeccEEEEEecCC-CcEEEEEEEEcCCC---------------------------------CC---CceeEEEEEEc
Q 009787 57 RYPMWGEEFNFSVDEL-PVQIIVTIYDWDII---------------------------------WK---STVLGSVIVTV 99 (525)
Q Consensus 57 ~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~---------------------------------~~---dd~iG~~~i~l 99 (525)
+||+|+|.|.|.+.+. ...+++.|||+|.- +. |||+|++.|++
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 9999999999999875 45699999999832 22 79999999999
Q ss_pred ccC-CCcccEEEEccCCC------ceEEEEEEEE
Q 009787 100 ESE-GQTGAVWYTLDSPS------GQVCLHIKTI 126 (525)
Q Consensus 100 ~~l-~~~~~~w~~L~~~~------G~i~l~i~~~ 126 (525)
.++ ..+.+.||.|+++. |++++.+...
T Consensus 268 ~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLs 301 (1103)
T KOG1328|consen 268 AEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLS 301 (1103)
T ss_pred hcCCcchHHHHhccCcccccccccceEEEEEEEe
Confidence 999 56678999998843 7777776655
No 108
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.95 E-value=2.8e-09 Score=118.08 Aligned_cols=105 Identities=23% Similarity=0.377 Sum_probs=90.4
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCCCCC
Q 009787 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWK 88 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~-~~~~~L~~~V~d~d~~~~ 88 (525)
...|-|+|.+..|.||+..|.+|.+||||.+.+.++ .++|+++++++||+|||+|.+.+. .....+.+.|+|||...+
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence 457889999999999999999999999999999876 679999999999999999999986 456779999999999999
Q ss_pred CceeEEEEEEcccCCCcc--cEEEEccCC
Q 009787 89 STVLGSVIVTVESEGQTG--AVWYTLDSP 115 (525)
Q Consensus 89 dd~iG~~~i~l~~l~~~~--~~w~~L~~~ 115 (525)
+|.||.+.++|..+.+.. ..-.+|.++
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCc
Confidence 999999999999983332 233445543
No 109
>PLN02223 phosphoinositide phospholipase C
Probab=98.95 E-value=1.1e-08 Score=107.40 Aligned_cols=105 Identities=18% Similarity=0.280 Sum_probs=83.2
Q ss_pred ceEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCCC-cEEEEEEE
Q 009787 13 AYLIKLELLAAKNLIGA-----NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIY 81 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~-----d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~~-~~L~~~V~ 81 (525)
...|.|+|+.|.+++.. +.....||||.+.+. ...++|.+..++.||.|||+|.|.+..+. ..|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999987521 224568999999973 34557877788999999999999986544 45899999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (525)
Q Consensus 82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (525)
|+|..+.++|+|++.+|+..+..+ -.+++|..+.|+
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~ 523 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGK 523 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcC
Confidence 999888899999999999999544 356788776665
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.91 E-value=7.9e-09 Score=114.59 Aligned_cols=121 Identities=17% Similarity=0.333 Sum_probs=100.2
Q ss_pred CCCCceEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCC
Q 009787 9 QTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85 (525)
Q Consensus 9 ~~~~~g~L~V~i~~A~~L~~~d--~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~ 85 (525)
.+.+-|+|.|+|.+|++|...+ ..+..|||+.+.... ...+|+++++++||+|||+|.+.+......|.++|||.+.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 6778999999999999999988 689999999999643 3458999999999999999999999888999999999998
Q ss_pred CCCCceeEEEEEEcccC---CCcccEEEEccC---CCceEEEEEEEEecc
Q 009787 86 IWKSTVLGSVIVTVESE---GQTGAVWYTLDS---PSGQVCLHIKTIKLP 129 (525)
Q Consensus 86 ~~~dd~iG~~~i~l~~l---~~~~~~w~~L~~---~~G~i~l~i~~~~~~ 129 (525)
..+|+.+|.+.++|..+ ......-+.+.. ..|++...+++.+..
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~ 560 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVI 560 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeeccc
Confidence 99999999999999877 122233444432 347788777777654
No 111
>PLN02270 phospholipase D alpha
Probab=98.90 E-value=1.6e-08 Score=110.56 Aligned_cols=115 Identities=18% Similarity=0.330 Sum_probs=93.8
Q ss_pred ceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCeEE-EeecccCC-CCCeeccEEEEEecCC
Q 009787 13 AYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSEKR-FSSMVPGS-RYPMWGEEFNFSVDEL 72 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d------------------~~g~~DPyv~v~~~~~~~-kT~~~~~t-~nP~W~e~f~~~v~~~ 72 (525)
.|.|.|+|.+|++|+.++ ..+.+|||+.+.+++.+. ||+++.+. .||.|+|.|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 588999999999998631 135689999999987665 99999874 6999999999999988
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC-----c--eEEEEEEEEec
Q 009787 73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----G--QVCLHIKTIKL 128 (525)
Q Consensus 73 ~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~-----G--~i~l~i~~~~~ 128 (525)
...+.|.|-|.|.++.. +||.+.+|+.++ +...+.|+++.... + ++++.+++...
T Consensus 87 ~~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 89999999999988655 999999999998 56678999996522 2 35556555553
No 112
>PLN02952 phosphoinositide phospholipase C
Probab=98.87 E-value=2.7e-08 Score=106.69 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=83.3
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 009787 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI 80 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~------d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V 80 (525)
...|.|+|+.|.+|+.. +.....||||.+.+- ..+.+|+++.++.||.|||+|.|.+..+ -..|.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 56899999999987532 112345999999973 4566899999999999999999987653 34589999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (525)
||+|..+.++|+|++.+|+..+..+. .|++|..+.|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy-R~VpL~~~~G~ 585 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI-RSVPLHDKKGE 585 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc-eeEeCcCCCCC
Confidence 99999889999999999999995443 48999764443
No 113
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.77 E-value=3.1e-08 Score=81.45 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=68.7
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009787 16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (525)
Q Consensus 16 L~V~i~~A~~L~~~d---~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~ 91 (525)
|.|+|..|+++...+ ..+.+||||++.++.. +.||++ +.||.|||+|.|.+.. ...+.+.|||+... ..-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~nEiel~VyDk~~~-~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-NNEEEVIVYDKGGD-QPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-CcEEEEEEEeCCCC-eecc
Confidence 679999999999888 5788999999999876 678877 5799999999999964 88899999998642 3446
Q ss_pred eEEEEEEcccC
Q 009787 92 LGSVIVTVESE 102 (525)
Q Consensus 92 iG~~~i~l~~l 102 (525)
||...+.++++
T Consensus 76 i~llW~~~sdi 86 (109)
T cd08689 76 VGLLWLRLSDI 86 (109)
T ss_pred eeeehhhHHHH
Confidence 88888887766
No 114
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.77 E-value=4e-09 Score=110.89 Aligned_cols=92 Identities=25% Similarity=0.408 Sum_probs=81.1
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeecccCCCCCeeccEEEEEecCC-----CcEEEE
Q 009787 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIV 78 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~t~nP~W~e~f~~~v~~~-----~~~L~~ 78 (525)
...-.|.|.|+-|+++.+-|.+|.+||||++.+... .++|+++.+++||+|+|+|+|.|+.. ...|.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 445568899999999999999999999999998753 34899999999999999999998653 233999
Q ss_pred EEEEcCCCCCCceeEEEEEEcccC
Q 009787 79 TIYDWDIIWKSTVLGSVIVTVESE 102 (525)
Q Consensus 79 ~V~d~d~~~~dd~iG~~~i~l~~l 102 (525)
+|+|+|-++.+||-|++.+.|..+
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred EeeccceecccccchHHHHhhCCC
Confidence 999999999999999999999988
No 115
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.73 E-value=1.1e-07 Score=101.83 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=82.7
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 009787 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI 80 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~------d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V 80 (525)
...|.|+|+.|.+++.. +.....||||.+.+- ....+|++..++.||.|||+|.|.+.-+ -..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 56799999999987521 223457999999973 3446888888899999999999996543 45699999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (525)
+|+|..+.|+|+|+..+|+..+..+- ..++|..+.|.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-R~V~L~~~~G~ 584 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI-HAVPLFNRKGV 584 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc-ceEeccCCCcC
Confidence 99998889999999999999995443 36678766654
No 116
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.67 E-value=2.8e-07 Score=98.64 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=81.8
Q ss_pred ceEEEEEEEEeecCC--CC----CCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 009787 13 AYLIKLELLAAKNLI--GA----NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI 80 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~--~~----d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V 80 (525)
...|.|+|+.|.+++ .. +.....||||.+.+. ..+.+|+++.++.||.|+|+|.|.+.-+ -..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 567999999998853 11 123457999999973 3456899999989999999999987543 35599999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (525)
||+|..+.++|+|+..+|+..+..+ -..++|..+.|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~G-yR~V~L~~~~g~ 567 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQG-IRAFPLHSRKGE 567 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCc-cceEEccCCCcC
Confidence 9999888899999999999999544 335677665554
No 117
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.64 E-value=1.9e-07 Score=100.20 Aligned_cols=103 Identities=20% Similarity=0.311 Sum_probs=81.1
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEECC-----eEEEee-cccCCCCCeeccEEEEEecCC-CcEEEEEEEEc
Q 009787 15 LIKLELLAAKNLIGANL----NGTSDPYAIITCGS-----EKRFSS-MVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDW 83 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~----~g~~DPyv~v~~~~-----~~~kT~-~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~ 83 (525)
+|.|+|+.|.++.+.-. ...+||||.+++-+ ...+|+ +..++-||.|+|+|+|.+.-+ -..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997665432 24589999999743 345788 446678999999999998654 45599999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (525)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (525)
|..++|||+|+.++|+..+..+-. -++|....|+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyR-hVpL~~~~G~ 730 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYR-HVPLLSREGE 730 (746)
T ss_pred CCCCcccccceeeccHHHhhCcee-eeeecCCCCc
Confidence 999999999999999999955433 4567665665
No 118
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.64 E-value=1.1e-07 Score=97.90 Aligned_cols=116 Identities=17% Similarity=0.310 Sum_probs=97.3
Q ss_pred ceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCeec-cEEEEEecC---CCcEEEEEEEEcCCCC
Q 009787 13 AYLIKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDE---LPVQIIVTIYDWDIIW 87 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~-e~f~~~v~~---~~~~L~~~V~d~d~~~ 87 (525)
.|.|-|+|..|++|+.+|. ....|.||.+.+.+..++|.+..+++||.|| +.|.|++.+ .+.+|.+.+.|+|..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 4788999999999999986 4457999999999999999999999999998 678999865 3556999999999999
Q ss_pred CCceeEEEEEEcccC----------C--CcccEEEEccC----CCceEEEEEEEEec
Q 009787 88 KSTVLGSVIVTVESE----------G--QTGAVWYTLDS----PSGQVCLHIKTIKL 128 (525)
Q Consensus 88 ~dd~iG~~~i~l~~l----------~--~~~~~w~~L~~----~~G~i~l~i~~~~~ 128 (525)
.+|-||.+.|.++.+ + .-...|+++-. -.|+|.+.+++...
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvdlf 138 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVDLF 138 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEeeh
Confidence 999999999999977 1 11356999854 34888888877643
No 119
>PLN02228 Phosphoinositide phospholipase C
Probab=98.63 E-value=4.4e-07 Score=96.93 Aligned_cols=105 Identities=12% Similarity=0.183 Sum_probs=81.5
Q ss_pred ceEEEEEEEEeecCCC---CC---CCCCCCcEEEEEEC-----CeEEEeecccCCCCCee-ccEEEEEecCC-CcEEEEE
Q 009787 13 AYLIKLELLAAKNLIG---AN---LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMW-GEEFNFSVDEL-PVQIIVT 79 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~---~d---~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W-~e~f~~~v~~~-~~~L~~~ 79 (525)
...|.|+|+.|++|+. .+ .....||||.+.+. ...++|+++.++.||.| +|+|.|.+..+ -..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998731 11 23347999999973 34568999988899999 99999997543 3459999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (525)
Q Consensus 80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (525)
|+|+|..+.++|+|+..++++.+..+ -..++|..+.|+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~G-YR~VpL~~~~G~ 547 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSG-VRAVRLHDRAGK 547 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCC-eeEEEccCCCCC
Confidence 99999888999999999999999543 346678665544
No 120
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.30 E-value=3.4e-06 Score=90.33 Aligned_cols=89 Identities=16% Similarity=0.324 Sum_probs=73.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEE-EeecccCCCCCeec-cEEEEEecCCC-cEEEEEEEEcC
Q 009787 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKR-FSSMVPGSRYPMWG-EEFNFSVDELP-VQIIVTIYDWD 84 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~-----~~~~~-kT~~~~~t~nP~W~-e~f~~~v~~~~-~~L~~~V~d~d 84 (525)
.-.|.|.|+.|+.|+..+ .|..-|||.+.+ +...+ +|.++.+++||+|+ |.|+|.+.++. ..|+|.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 457889999999998544 455679999986 33444 45566889999999 99999997754 45999999999
Q ss_pred CCCCCceeEEEEEEcccC
Q 009787 85 IIWKSTVLGSVIVTVESE 102 (525)
Q Consensus 85 ~~~~dd~iG~~~i~l~~l 102 (525)
.++...|||++.+|+..+
T Consensus 1143 mfs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred ccCCcceeeeeecchhhh
Confidence 999888999999999988
No 121
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.29 E-value=4.4e-07 Score=99.26 Aligned_cols=97 Identities=22% Similarity=0.431 Sum_probs=83.7
Q ss_pred CCCCCC-CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEE--EeecccCCCCCeeccEEEEEecC-CCcEEEEEE
Q 009787 5 KGDPQT-NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTI 80 (525)
Q Consensus 5 ~~~~~~-~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~--kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V 80 (525)
++-+++ +-..+++|++++|.+|.+.|.+|.+|||+.+.++++.. +...+.+++||+|++.|++...- ....+.++|
T Consensus 603 ~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~v 682 (1105)
T KOG1326|consen 603 LDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEV 682 (1105)
T ss_pred hcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEE
Confidence 344455 55667889999999999999999999999999998774 67888999999999999998654 356699999
Q ss_pred EEcCCCCCCceeEEEEEEccc
Q 009787 81 YDWDIIWKSTVLGSVIVTVES 101 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~ 101 (525)
||+|..+.|+.||+..+.+..
T Consensus 683 yd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 683 YDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred EEeecccccchhhceehhhhh
Confidence 999999999999999998874
No 122
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.26 E-value=1.3e-06 Score=92.61 Aligned_cols=93 Identities=25% Similarity=0.440 Sum_probs=72.4
Q ss_pred EEeecCCCCCCCCCCCcEEEEEECCeE----EEeecccCCCCCeeccEEEEEecCC----------------CcEEEEEE
Q 009787 21 LAAKNLIGANLNGTSDPYAIITCGSEK----RFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQIIVTI 80 (525)
Q Consensus 21 ~~A~~L~~~d~~g~~DPyv~v~~~~~~----~kT~~~~~t~nP~W~e~f~~~v~~~----------------~~~L~~~V 80 (525)
+.++.+.+.. ++.+|||+.+...+.. .+|++++++.+|.|+|.|.|.+... ...|++.+
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 3444444444 5669999999975443 3899999999999999999987543 34589999
Q ss_pred EE-cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787 81 YD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 81 ~d-~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (525)
|+ ++....++|+|++.+++... ......||-|++
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp 253 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP 253 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEec
Confidence 99 56666699999999999987 455678999987
No 123
>PLN02352 phospholipase D epsilon
Probab=98.12 E-value=2.2e-05 Score=86.16 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=80.9
Q ss_pred CceEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCeEE-EeecccCCCCCeeccEEEEEecCCC-cEEEEEEEEcC
Q 009787 12 SAYLIKLELLAAKNLIGA----NL-NGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWD 84 (525)
Q Consensus 12 ~~g~L~V~i~~A~~L~~~----d~-~g~~DPyv~v~~~~~~~-kT~~~~~t~nP~W~e~f~~~v~~~~-~~L~~~V~d~d 84 (525)
-.|.|.++|.+|+-+... +. ....|||+.+.+++.+. || .+..||.|+|+|.+.+.... ..+.|.|-|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 368999999999843322 11 11239999999987665 77 55669999999999998766 689999977
Q ss_pred CCCCCceeEEEEEEcccC--CCc-ccEEEEccCCC-----c-eEEEEEEEEecc
Q 009787 85 IIWKSTVLGSVIVTVESE--GQT-GAVWYTLDSPS-----G-QVCLHIKTIKLP 129 (525)
Q Consensus 85 ~~~~dd~iG~~~i~l~~l--~~~-~~~w~~L~~~~-----G-~i~l~i~~~~~~ 129 (525)
...+||.+.+++.++ +.. .+.|+++.... | ++++.+++....
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 356999999999999 333 78999996532 3 455555555443
No 124
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=1.2e-05 Score=78.59 Aligned_cols=98 Identities=18% Similarity=0.285 Sum_probs=78.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 009787 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD 84 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d~d 84 (525)
..-|.|++++|..|..+|.+|-+|||+...+.. .+++|.+.+++++|.|+++|.+.+... ...+.|.|||.+
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~ 311 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYD 311 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccC
Confidence 455789999999999999999999999998742 245799999999999999999998653 456999999999
Q ss_pred CCCCCceeEEEEEEcccCCCcccEEE
Q 009787 85 IIWKSTVLGSVIVTVESEGQTGAVWY 110 (525)
Q Consensus 85 ~~~~dd~iG~~~i~l~~l~~~~~~w~ 110 (525)
.....+++|-.....-..+.....|+
T Consensus 312 ~G~s~d~~GG~~~g~~rr~~v~~h~g 337 (362)
T KOG1013|consen 312 IGKSNDSIGGSMLGGYRRGEVHKHWG 337 (362)
T ss_pred CCcCccCCCcccccccccchhhcCcc
Confidence 88788999877666555544444443
No 125
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.70 E-value=3.4e-05 Score=85.93 Aligned_cols=102 Identities=19% Similarity=0.289 Sum_probs=84.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEEEEc
Q 009787 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW 83 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V~d~ 83 (525)
.|+|.|-|.-|++|+-...+..+||||..++. ..++||+++++|.||.|||....+ +.. ..++|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 57888999999999766657789999999984 235589999999999999998887 322 246799999999
Q ss_pred CCCCCCceeEEEEEEcccCC--CcccEEEEccC
Q 009787 84 DIIWKSTVLGSVIVTVESEG--QTGAVWYTLDS 114 (525)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l~--~~~~~w~~L~~ 114 (525)
+....+.|+|.+.++|.++. .....||.|..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 99888999999999999883 33448999964
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.68 E-value=3.7e-05 Score=81.36 Aligned_cols=97 Identities=22% Similarity=0.358 Sum_probs=80.7
Q ss_pred cccCcccceeeecCCcceeEeeeeeeeecc---cccceeEEEeCCeEEEEecCCCceeEEEEeecccee--ccc-ccccc
Q 009787 159 HQKPGPLQTIFNLLPDEFVELSYSCVIERS---FLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQ-HAFIN 232 (525)
Q Consensus 159 ~~k~~~f~~lF~lp~~E~l~~~~~c~l~~~---~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~--k~~-~~~~~ 232 (525)
+.+++.| .+|+|| |.+..+-.|.++.. ...+||||++.+++||.|.... .+.+++|+..|.. +.. ...++
T Consensus 7 r~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~~ 82 (671)
T KOG4347|consen 7 RLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLFT 82 (671)
T ss_pred hhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccch
Confidence 4577889 999999 99999999987763 3468999999999999998875 4899999999999 333 45667
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHH
Q 009787 233 PAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQ 274 (525)
Q Consensus 233 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~ 274 (525)
..|.++|+ +...+.|..+..|+..+--
T Consensus 83 ~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k 109 (671)
T KOG4347|consen 83 QLISLFTS---------------NMVGMRFGGLTERLKLLSK 109 (671)
T ss_pred hhhHHhhc---------------CcceEEecchhhHHHHHHH
Confidence 78899986 6688999999999987743
No 127
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.58 E-value=0.00013 Score=62.12 Aligned_cols=97 Identities=20% Similarity=0.312 Sum_probs=72.4
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEE----CCeEEEeecccCCCCCeeccEEEEEec--------
Q 009787 16 IKLELLAAKNLIGANL-------------NGTSDPYAIITC----GSEKRFSSMVPGSRYPMWGEEFNFSVD-------- 70 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~-------------~g~~DPyv~v~~----~~~~~kT~~~~~t~nP~W~e~f~~~v~-------- 70 (525)
|.|.|++|.||+.... .=..++||.+.+ +.+..+|+++.++-.|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688999999985321 112589999985 356678999999999999999999754
Q ss_pred C--------CCcEEEEEEEEcCCC----------CCCceeEEEEEEcccC---CCcccEEEEc
Q 009787 71 E--------LPVQIIVTIYDWDII----------WKSTVLGSVIVTVESE---GQTGAVWYTL 112 (525)
Q Consensus 71 ~--------~~~~L~~~V~d~d~~----------~~dd~iG~~~i~l~~l---~~~~~~w~~L 112 (525)
+ ...++.++||+.+.- .+|-.||.+.||+.++ ......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 124489999998642 2355899999999988 4556779875
No 128
>PLN02964 phosphatidylserine decarboxylase
Probab=97.47 E-value=0.00022 Score=77.81 Aligned_cols=84 Identities=14% Similarity=0.256 Sum_probs=70.5
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEE-EEECCeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCC
Q 009787 12 SAYLIKLELLAAKNLIGANLNGTSDPYAI-ITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKS 89 (525)
Q Consensus 12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~-v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~d 89 (525)
-.|++.+++++|+ ++ ..|||+. +.++.+.++|.+.++|+||+||+...|.+.+ ...-.++.|||++.++++
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n 124 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKN 124 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHH
Confidence 3678899999987 33 3688655 5578899999999999999999998888754 344479999999999999
Q ss_pred ceeEEEEEEcccC
Q 009787 90 TVLGSVIVTVESE 102 (525)
Q Consensus 90 d~iG~~~i~l~~l 102 (525)
+++|.+++++...
T Consensus 125 ~lv~~~e~~~t~f 137 (644)
T PLN02964 125 TLVGYCELDLFDF 137 (644)
T ss_pred HhhhheeecHhhc
Confidence 9999999988776
No 129
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.43 E-value=0.00046 Score=72.60 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=113.2
Q ss_pred CCCCCCCCCCCcEEEEEEC-------------------CeEEEeecccCCCCCeeccEEEEE-ecCCCcEEEEEEEEcCC
Q 009787 26 LIGANLNGTSDPYAIITCG-------------------SEKRFSSMVPGSRYPMWGEEFNFS-VDELPVQIIVTIYDWDI 85 (525)
Q Consensus 26 L~~~d~~g~~DPyv~v~~~-------------------~~~~kT~~~~~t~nP~W~e~f~~~-v~~~~~~L~~~V~d~d~ 85 (525)
+.+.|..+++||-|.+... .+..+|+++.+.+||.|.+.|.+. ..+..+.|.+.++|.+.
T Consensus 2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~ 81 (529)
T KOG1327|consen 2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDS 81 (529)
T ss_pred ccccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCC
Confidence 3445566677777776531 223378999999999999999887 45667889999999875
Q ss_pred C----CCCceeEEEEEEcccCCCcccE--EEEccC--CCceEEEEEEEEecccCCccccccccccccccccccccCCCce
Q 009787 86 I----WKSTVLGSVIVTVESEGQTGAV--WYTLDS--PSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTV 157 (525)
Q Consensus 86 ~----~~dd~iG~~~i~l~~l~~~~~~--w~~L~~--~~G~i~l~i~~~~~~~~~~~~i~~~l~~~~~~~l~v~~~~~~~ 157 (525)
. ...+|+|++...+..+-..... -+.+.+ ..|...+.+.++...... ...+.-+....+.+++
T Consensus 82 ~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~g~iti~aee~~~~~---------~~~~~~~~~~~ld~kd 152 (529)
T KOG1327|consen 82 RTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGSGTITISAEEDESDN---------DVVQFSFRAKNLDPKD 152 (529)
T ss_pred ccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCcccEEEEeecccccC---------ceeeeeeeeeecCccc
Confidence 4 4578999999999988222111 122221 123334444444332221 1122223345677888
Q ss_pred ecccCcccceeeec---------CCcceeEeeeeeeeec-ccccc----eeEEEeCCeEEEEecCCCc
Q 009787 158 VHQKPGPLQTIFNL---------LPDEFVELSYSCVIER-SFLYH----GRMYVSAWHICFHSNAFSR 211 (525)
Q Consensus 158 ~~~k~~~f~~lF~l---------p~~E~l~~~~~c~l~~-~~~~~----Grlyis~~~~~F~s~~~g~ 211 (525)
+..++++|...++. ...|.+....+..|.. .++++ +..-.+....|++.+..|.
T Consensus 153 ~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 153 FFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred ccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCC
Confidence 99999999988863 2448888888888877 44443 3344555577777766653
No 130
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.43 E-value=3e-05 Score=85.28 Aligned_cols=104 Identities=18% Similarity=0.249 Sum_probs=85.9
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEE-ec---------CCCcEEEEEE
Q 009787 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS-VD---------ELPVQIIVTI 80 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~-v~---------~~~~~L~~~V 80 (525)
...+.++++|.+|+.|.+.+..+.+|||+.+..-++.+.|.++.+++||.|+.+..|. +. .....+.++|
T Consensus 203 ~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~ 282 (1105)
T KOG1326|consen 203 VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV 282 (1105)
T ss_pred hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence 4456788899999999999999999999999999999999999999999999999886 21 1234488999
Q ss_pred EEcCCCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009787 81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLDS 114 (525)
Q Consensus 81 ~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~ 114 (525)
||.++.+.++|+|.......-. ..+.-.|+++..
T Consensus 283 yd~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~r 317 (1105)
T KOG1326|consen 283 YDLDRSGINEFKGRKKQRPYVMVQCPALKWVPTMR 317 (1105)
T ss_pred ehhhhhchHHhhcccccceEEEecCCccceEEeec
Confidence 9999999999999977655444 345667888754
No 131
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.25 E-value=0.00052 Score=72.19 Aligned_cols=82 Identities=24% Similarity=0.323 Sum_probs=66.8
Q ss_pred EEeecCCCCCCCCCCCcEEEEEEC--C----eEEEeecccCCCCCeeccEEEEEe-----cCCCcEEEEEEEEcCCCCCC
Q 009787 21 LAAKNLIGANLNGTSDPYAIITCG--S----EKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQIIVTIYDWDIIWKS 89 (525)
Q Consensus 21 ~~A~~L~~~d~~g~~DPyv~v~~~--~----~~~kT~~~~~t~nP~W~e~f~~~v-----~~~~~~L~~~V~d~d~~~~d 89 (525)
.+|++|.++|.++++|||..+.-- . ..++|++++++++|.| ..|.+.. .+....+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w-~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQW-APFSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcc-cccccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 568999999999999999988742 1 2248999999999999 4455543 23467799999999999999
Q ss_pred ceeEEEEEEcccCC
Q 009787 90 TVLGSVIVTVESEG 103 (525)
Q Consensus 90 d~iG~~~i~l~~l~ 103 (525)
++||.+..++..+.
T Consensus 222 ~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQ 235 (529)
T ss_pred CceeEecccHHHhc
Confidence 99999999998883
No 132
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0001 Score=72.19 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=74.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEE-ecC-C--CcEEEEEEEEcC
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFS-VDE-L--PVQIIVTIYDWD 84 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~-v~~-~--~~~L~~~V~d~d 84 (525)
..+..+|.+|++|++++..+..|||+.+.+.. ...+|++..+++||.|+|+-... +.. . ...+++.|.|.+
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence 46789999999999999999999999998752 23578899999999999987766 222 1 234788999999
Q ss_pred CCCCCceeEEEEEEcccCC
Q 009787 85 IIWKSTVLGSVIVTVESEG 103 (525)
Q Consensus 85 ~~~~dd~iG~~~i~l~~l~ 103 (525)
.+...+++|+..+.+..+.
T Consensus 173 ~~~~~~sqGq~r~~lkKl~ 191 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLK 191 (362)
T ss_pred ccccccCcccchhhhhccC
Confidence 9999999999998888773
No 133
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0004 Score=69.20 Aligned_cols=104 Identities=13% Similarity=0.241 Sum_probs=84.0
Q ss_pred CCceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCe-----EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEE-c
Q 009787 11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD-W 83 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~~~-----~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d-~ 83 (525)
...|.|.|.|++|++|..+.. ...++|||.+++... +.+|+...++++|.+-....|+-..+...|.+.||- +
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence 347899999999999987753 346899999997432 337888899999988888888877778889999995 5
Q ss_pred CCCCCCceeEEEEEEcccCC---CcccEEEEccC
Q 009787 84 DIIWKSTVLGSVIVTVESEG---QTGAVWYTLDS 114 (525)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l~---~~~~~w~~L~~ 114 (525)
.++..+.|+|.+.+-+++++ .....||+|.+
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 66667889999999999982 35678999976
No 134
>PF14470 bPH_3: Bacterial PH domain
Probab=96.80 E-value=0.026 Score=46.17 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=65.8
Q ss_pred cCCcceeEeeeeeeeecc-cccceeEEEeCCeEEEEecC-CCceeEEEEeecccee-ccccccccCcEEEEEecCCCCCC
Q 009787 171 LLPDEFVELSYSCVIERS-FLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDE-RSQHAFINPAITIILRMGAGGHG 247 (525)
Q Consensus 171 lp~~E~l~~~~~c~l~~~-~~~~Grlyis~~~~~F~s~~-~g~~~~~~i~~~~i~~-k~~~~~~~~~i~i~~~~~~~~~~ 247 (525)
|.++|.+.....|.+... ....|-+.+|+.++.|+... ++......+|+++|.+ .....++...|.|.+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~-------- 72 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET-------- 72 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE--------
Confidence 567899999999987742 23359999999999999775 6678889999999999 555666778899998
Q ss_pred CCCCCCCCCceeEEEeeeechHHH
Q 009787 248 VPPLGSPDGRVRYKFASFWNRNHA 271 (525)
Q Consensus 248 ~~~~~~~~~~~~~~f~sf~~rd~~ 271 (525)
+..++.|.++ ..+++
T Consensus 73 --------~~~~~~i~~i-~k~~~ 87 (96)
T PF14470_consen 73 --------NGEKIKIDNI-QKGDV 87 (96)
T ss_pred --------CCEEEEEEEc-CHHHH
Confidence 4578888888 44443
No 135
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.011 Score=62.73 Aligned_cols=99 Identities=17% Similarity=0.300 Sum_probs=76.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEeecccCCCCCeeccEEEEEecCC----CcEEEEEEEEc
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW 83 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~~~~~t~nP~W~e~f~~~v~~~----~~~L~~~V~d~ 83 (525)
.++|.|+.|.+|+=.. .|.--||+.+.+-+ +++.|++..++-.|.+||+|.|-+... .-+|.+.|-|+
T Consensus 1126 kvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred eEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 5789999999997443 66778999998632 234588888888999999999997542 23488888887
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (525)
Q Consensus 84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (525)
--...|..+|.+.+.|.++ ...-..|++|..
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 6555678999999999998 444567999965
No 136
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=96.44 E-value=0.0042 Score=52.23 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=45.6
Q ss_pred eEeeeeeeeec-ccccceeEEEeCCeEEEEec---------------CCCceeEEEEeecccee--ccccccccCcEEEE
Q 009787 177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDE--RSQHAFINPAITII 238 (525)
Q Consensus 177 l~~~~~c~l~~-~~~~~Grlyis~~~~~F~s~---------------~~g~~~~~~i~~~~i~~--k~~~~~~~~~i~i~ 238 (525)
++-++.|.+-. .....|.+.++.++++|..+ .........+|+++|.. +..-.+-..||+|+
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF 81 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIF 81 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEE
Confidence 45678999876 44568999999999999986 33334567899999999 33334446799999
Q ss_pred Eec
Q 009787 239 LRM 241 (525)
Q Consensus 239 ~~~ 241 (525)
+.+
T Consensus 82 ~~d 84 (106)
T PF14844_consen 82 FSD 84 (106)
T ss_dssp ETT
T ss_pred EcC
Confidence 963
No 137
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.27 E-value=0.53 Score=42.59 Aligned_cols=149 Identities=14% Similarity=0.140 Sum_probs=102.3
Q ss_pred eeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecC-CC-----CCCcceeEeEEE
Q 009787 339 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK-SP-----IYPRDTAMTESQ 412 (525)
Q Consensus 339 ~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~-~~-----~gpk~~~~~~~Q 412 (525)
..+||+|++++|.+|.+ ..||..-+...+..+..+..-...++ +.+..+.-..|-. -| +-+..-.+.+++
T Consensus 4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~~--g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDGD--GVRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcCC--eEEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 56899999999988875 78888888888887777777666554 3333333333321 11 344445667777
Q ss_pred EEEecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHH
Q 009787 413 HAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE 492 (525)
Q Consensus 413 ~~~~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~ 492 (525)
+.....+ ..+..+.....+ |.-..+.....++. ...+|++.+. +.|+-. =.++-++||+.+.+...+.++
T Consensus 80 ~w~~~~~-g~~~g~~~~~~~----G~P~~~~G~~~L~~-~~~gt~~~~~---g~v~v~-VPlvGgkiE~~v~~~~~~~~~ 149 (159)
T PF10698_consen 80 TWTPLDD-GRRTGTFTVSIP----GAPVSISGTMRLRP-DGGGTRLTVE---GEVKVK-VPLVGGKIEKAVAENLRKLLE 149 (159)
T ss_pred EEecCCC-CeEEEEEEEEec----CceEEEEEEEEEec-CCCCEEEEEE---EEEEEE-EccccHHHHHHHHHHHHHHHH
Confidence 7743333 355555555544 55589999999999 5567999888 766432 347899999999998888888
Q ss_pred HHHHHHHHH
Q 009787 493 LMLETARSY 501 (525)
Q Consensus 493 ~~~~~~~~~ 501 (525)
...+.+.+.
T Consensus 150 ~e~~~~~~w 158 (159)
T PF10698_consen 150 AEQEFTAEW 158 (159)
T ss_pred HHHHHHHhh
Confidence 777776654
No 138
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.13 E-value=0.0075 Score=47.96 Aligned_cols=93 Identities=20% Similarity=0.282 Sum_probs=65.3
Q ss_pred EEEEEEeecCCCCCCCCCCCc--EEE--EEEC-CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC
Q 009787 17 KLELLAAKNLIGANLNGTSDP--YAI--ITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK 88 (525)
Q Consensus 17 ~V~i~~A~~L~~~d~~g~~DP--yv~--v~~~-~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~ 88 (525)
-++++.|++|.-....| -+| |+. +.+. ....+|.......||+|.|+|.|.+.. ....|-|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 47889999987544222 234 333 2233 234588888999999999999998643 24558899998 4456
Q ss_pred CceeEEEEEEcccCC-CcccEEEEc
Q 009787 89 STVLGSVIVTVESEG-QTGAVWYTL 112 (525)
Q Consensus 89 dd~iG~~~i~l~~l~-~~~~~w~~L 112 (525)
..-||.+.+.++.++ ...++|.++
T Consensus 79 Ke~iG~~sL~l~s~geeE~~HW~e~ 103 (103)
T cd08684 79 KRTIGECSLSLRTLSTQETDHWLEI 103 (103)
T ss_pred cceeeEEEeecccCCHHHhhhhhcC
Confidence 779999999999984 445667653
No 139
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.08 E-value=0.013 Score=57.20 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=78.9
Q ss_pred CCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009787 11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~--~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~ 87 (525)
...|.|.++++.+++|+-... .-..+-||++.++.+. .+|.+.....-=.|.|+|..++.+ ...+.+-||.|+.-.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 457899999999999986543 4457899999988654 366666666667899999999876 677899999999876
Q ss_pred CCceeEEEEEEcccC-CCcccE--EEEccCCCceEEEEEEEE
Q 009787 88 KSTVLGSVIVTVESE-GQTGAV--WYTLDSPSGQVCLHIKTI 126 (525)
Q Consensus 88 ~dd~iG~~~i~l~~l-~~~~~~--w~~L~~~~G~i~l~i~~~ 126 (525)
++++.-..-+.+..+ ....+. -..|.+ .|++-+++.+.
T Consensus 127 RHKLC~~g~l~~~~v~rqspd~~~Al~leP-rgq~~~r~~~~ 167 (442)
T KOG1452|consen 127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-RGQPPLRLPLA 167 (442)
T ss_pred hccccccchhhhhhhhhcCCcceeeeeccc-CCCCceecccC
Confidence 666533333333333 222333 334454 57777776655
No 140
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.96 E-value=0.0087 Score=60.50 Aligned_cols=113 Identities=10% Similarity=0.100 Sum_probs=79.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC---C---------cEE
Q 009787 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---P---------VQI 76 (525)
Q Consensus 14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~---------~~L 76 (525)
-.|.+.|+++.+++.....--.|-|+.+.+- .++.+|.+++.+.+|.|+|.|-+.+... . ..+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3567778888887765422234667777642 3345789999999999999999998652 1 128
Q ss_pred EEEEEEcCCCC-CCceeEEEEEEcccC--CCcccEEEEccC----CCceEEEEEEEE
Q 009787 77 IVTIYDWDIIW-KSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTI 126 (525)
Q Consensus 77 ~~~V~d~d~~~-~dd~iG~~~i~l~~l--~~~~~~w~~L~~----~~G~i~l~i~~~ 126 (525)
+|++|++..+- +|.++|.+.+.+..+ .......++|.. -+|.+.+.+++.
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 99999987654 588999999999888 333445677754 236666666665
No 141
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.46 E-value=0.56 Score=47.74 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=83.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC--------CCcEEEEEEEEcC-CC
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II 86 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~--------~~~~L~~~V~d~d-~~ 86 (525)
+.|.|++|+|++... .-.-.+..+++++...|..+..+-.|.|+-....++.. ...+|++++|-.| ..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998652 33456677789999999999999999999888777642 3556999999988 55
Q ss_pred CCCceeEEEEEEcccC---C----CcccEEEEccCC-------CceEEEEEEEEec
Q 009787 87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP-------SGQVCLHIKTIKL 128 (525)
Q Consensus 87 ~~dd~iG~~~i~l~~l---~----~~~~~w~~L~~~-------~G~i~l~i~~~~~ 128 (525)
+..+.||.+.++|... . .....||+|.+- +.++.+.+.++..
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence 6678999999999876 2 245679999763 2446666666643
No 142
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.14 E-value=0.55 Score=37.84 Aligned_cols=85 Identities=13% Similarity=0.260 Sum_probs=60.1
Q ss_pred CCCCcEEEEEECCeEE-EeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCcccEEEE
Q 009787 33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT 111 (525)
Q Consensus 33 g~~DPyv~v~~~~~~~-kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~ 111 (525)
|.++-.+++.+++... +|.-.. ..+..|++.|.++++. .++|.|.||-+|- ..+.|-..+.|.+.. ...-.+
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~--~~~~~~ 79 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDER--HEVQLD 79 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhc--ccceec
Confidence 3477889999887554 565543 3589999999999987 7889999998774 345666667777642 244556
Q ss_pred ccCCCceEEEEEEE
Q 009787 112 LDSPSGQVCLHIKT 125 (525)
Q Consensus 112 L~~~~G~i~l~i~~ 125 (525)
|.+ .|.+..++.+
T Consensus 80 lep-qg~l~~ev~f 92 (98)
T cd08687 80 MEP-QLCLVAELTF 92 (98)
T ss_pred ccc-ccEEEEEEEe
Confidence 665 6777766665
No 143
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.82 E-value=0.17 Score=56.04 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=72.1
Q ss_pred CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeecc-cCCCCCeeccE-EEEE-e-cCCCcEE
Q 009787 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMV-PGSRYPMWGEE-FNFS-V-DELPVQI 76 (525)
Q Consensus 8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~~~-~~t~nP~W~e~-f~~~-v-~~~~~~L 76 (525)
..+.=.+.+.|+|++|.-|..++ ...||.+.+- ...++|++. .++.||+|+|+ |.|. | -+.-..|
T Consensus 697 VdgvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~l 772 (1189)
T KOG1265|consen 697 VDGVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASL 772 (1189)
T ss_pred ccceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhe
Confidence 34445678999999999998776 3479998862 234578777 45799999865 7887 3 2334569
Q ss_pred EEEEEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009787 77 IVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (525)
Q Consensus 77 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (525)
+|.||+.+ ..|||+-.+|++-+..+ -..+.|....+
T Consensus 773 RiavyeEg----gK~ig~RIlpvd~l~~G-Yrhv~LRse~N 808 (1189)
T KOG1265|consen 773 RIAVYEEG----GKFIGQRILPVDGLNAG-YRHVCLRSESN 808 (1189)
T ss_pred eeeeeccC----CceeeeeccchhcccCc-ceeEEecCCCC
Confidence 99999975 35999999999988543 33456655433
No 144
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=93.54 E-value=1.4 Score=39.52 Aligned_cols=93 Identities=18% Similarity=0.191 Sum_probs=67.2
Q ss_pred CCCceEEEEEEEEeecCCCCCCC--CCCCcEEEE--EECCeEEEeecccCCCCCeeccEEEEEecCC-------------
Q 009787 10 TNSAYLIKLELLAAKNLIGANLN--GTSDPYAII--TCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL------------- 72 (525)
Q Consensus 10 ~~~~g~L~V~i~~A~~L~~~d~~--g~~DPyv~v--~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~------------- 72 (525)
.+...-|.|+|..++-+..--.. +..+....+ .+.+++++|+.+..+.+|.|+|.|.|++...
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 34566788999988755432111 344444444 4689999999999999999999999997532
Q ss_pred -CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009787 73 -PVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (525)
Q Consensus 73 -~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l 102 (525)
...|++-|---|..+...++|.-.+....+
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~v 115 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKV 115 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHH
Confidence 234888888777766667888888887776
No 145
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.44 E-value=0.57 Score=43.07 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=57.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----EeecccCCCCCeeccEEEEEe--cCC--CcEEEEEEEEcC
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD 84 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~W~e~f~~~v--~~~--~~~L~~~V~d~d 84 (525)
.++|+|+.+.+|... ....+-|+.+.+ +++.. .|+....+..+.|||...|++ .+. ...|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 578999999999762 234566777653 44332 455444456799999999975 332 456999999975
Q ss_pred CCC----------------CCceeEEEEEEcccC
Q 009787 85 IIW----------------KSTVLGSVIVTVESE 102 (525)
Q Consensus 85 ~~~----------------~dd~iG~~~i~l~~l 102 (525)
... .+..||.+.+++-+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 322 135778777776654
No 146
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.40 E-value=0.68 Score=41.88 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=57.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----EeecccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcC
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWD 84 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~W~e~f~~~v~--~--~~~~L~~~V~d~d 84 (525)
.++|+|+++.++...+ .+|-|+.+.+ +++.. .|..+.. .++.|||...|.+. + ...+|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5789999999987643 4678888764 44322 3443332 57999999999753 3 3556999999975
Q ss_pred CCC----CCceeEEEEEEcccC
Q 009787 85 IIW----KSTVLGSVIVTVESE 102 (525)
Q Consensus 85 ~~~----~dd~iG~~~i~l~~l 102 (525)
... ....+|.+.++|-+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 321 124689998888765
No 147
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=92.75 E-value=2.7 Score=40.18 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=80.5
Q ss_pred eeee-ecCHHHHHHHHcCCCCchHHHHHHHc-CCcceEeccceecCCCCCcEEEEEEE-eecCCCCCCcceeEeEEEEEE
Q 009787 339 NDVF-PCTAEQFFTLLFSDDSKFTNEYRAAR-KDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHAV 415 (525)
Q Consensus 339 ~~~~-~~s~~~~f~~lf~d~s~f~~~~~~~~-~~~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~~ 415 (525)
..++ ++|++.+|+++.+ ..+..++-... ....+. .. ++ + .+ +.|. .....|+.++.--.. ....
T Consensus 52 ~~~~~~~s~e~~~~~l~D--~~~r~~Wd~~~~e~~~ie--~~---d~-~--~~-i~y~~~~~P~pvs~RDfV~~--r~~~ 118 (222)
T cd08871 52 SAIFPDVPAETLYDVLHD--PEYRKTWDSNMIESFDIC--QL---NP-N--ND-IGYYSAKCPKPLKNRDFVNL--RSWL 118 (222)
T ss_pred EEEeCCCCHHHHHHHHHC--hhhhhhhhhhhceeEEEE--Ec---CC-C--CE-EEEEEeECCCCCCCCeEEEE--EEEE
Confidence 4455 5899999998864 33333332221 111122 11 11 1 12 2332 222234566543221 2222
Q ss_pred ecCCCCeEEEEEeeeeCCCCCCCeE----EEEEEEEEEeeCCCceEEEEEEeeeeEEEeec--ceeeeeeeechHHHHHH
Q 009787 416 LSPDKKIFVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVVSAGAHFKKW--CVIQFKIKTGAVNKYKK 489 (525)
Q Consensus 416 ~~~~~~~~~v~~~~~~~~vPygd~F----~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~--~~~K~~Ie~~~~~~~~~ 489 (525)
.. ++.++++......+++|-...+ .....|.|++.++++|++... +.++..++ +|+-..+-+.+.-...+
T Consensus 119 ~~-~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~---~~~Dp~G~IP~~lvN~~~~~~~~~~l~ 194 (222)
T cd08871 119 EF-GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYV---TQNDPKGSLPKWVVNKATTKLAPKVMK 194 (222)
T ss_pred eC-CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEE---EecCCCCCcCHHHHHHHHHHHhHHHHH
Confidence 22 2456666666666788866542 234579999998889999998 88877663 33333333333334444
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q 009787 490 EVELMLETARSYIKICTSGG 509 (525)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~ 509 (525)
.++..+....+..+.++...
T Consensus 195 ~l~k~~~~y~~~~~~~~~~~ 214 (222)
T cd08871 195 KLHKAALKYPEWKAKNNPEF 214 (222)
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 55555555555555555443
No 148
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=92.65 E-value=0.57 Score=39.11 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=58.3
Q ss_pred ceeEeeeeeeeec-ccccceeEEEeCCeEEEEecC----C-Cc---------eeEEEEeecccee--ccccccccCcEEE
Q 009787 175 EFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----F-SR---------QMKVIIPIGDIDE--RSQHAFINPAITI 237 (525)
Q Consensus 175 E~l~~~~~c~l~~-~~~~~Grlyis~~~~~F~s~~----~-g~---------~~~~~i~~~~i~~--k~~~~~~~~~i~i 237 (525)
|.++-+..|.+-. -.-..|++-||..+++|.... + +. .....+++++|.+ +..-.+-..|++|
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi 80 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL 80 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence 3566778888766 334569999999999999631 1 11 1123788889888 3333444569999
Q ss_pred EEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 009787 238 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 277 (525)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~ 277 (525)
+..+ + .=+|-+|-+++....++..
T Consensus 81 F~~d---------------~-~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 81 FLAS---------------R-TSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred EEeC---------------C-ceEEEEeCcHHHHHHHHhh
Confidence 9952 2 3355588888777666654
No 149
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=92.54 E-value=4.5 Score=35.53 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=71.0
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE---EEeecc-cCCCCCeeccEEEEEec----C-----CCcEEE
Q 009787 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMV-PGSRYPMWGEEFNFSVD----E-----LPVQII 77 (525)
Q Consensus 11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~~-~~t~nP~W~e~f~~~v~----~-----~~~~L~ 77 (525)
.....+.++|.+..+++. ...-.|+....+... ..|... ..+-.-.|+++|.+.+. . ....+.
T Consensus 4 ~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 4 AVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred eeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 346678899999999876 223445555555443 334333 33456899999988742 1 133488
Q ss_pred EEEEEcCCCCCCceeEEEEEEcccC-C---CcccEEEEccCC-CceEEEEEEEEecc
Q 009787 78 VTIYDWDIIWKSTVLGSVIVTVESE-G---QTGAVWYTLDSP-SGQVCLHIKTIKLP 129 (525)
Q Consensus 78 ~~V~d~d~~~~dd~iG~~~i~l~~l-~---~~~~~w~~L~~~-~G~i~l~i~~~~~~ 129 (525)
|.|+.....++...+|.+.++|.+. . .....-++|... .....+.+.+....
T Consensus 80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE 136 (143)
T ss_pred EEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence 9999875333336899999999998 2 233445666553 44444444444333
No 150
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.38 E-value=0.92 Score=40.85 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=57.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----EeecccCCCCCeeccEEEEEe--cC--CCcEEEEEEEEcC
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DE--LPVQIIVTIYDWD 84 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~W~e~f~~~v--~~--~~~~L~~~V~d~d 84 (525)
.++|++....++...+ ....+-|+.+.+ +++.. .|.......++.|||...|.+ .. ....|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4678888888776522 234566776654 43321 333333336899999999985 33 2556999999977
Q ss_pred CCC--CCceeEEEEEEcccC
Q 009787 85 IIW--KSTVLGSVIVTVESE 102 (525)
Q Consensus 85 ~~~--~dd~iG~~~i~l~~l 102 (525)
..+ .+..||.+.+++-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 544 457899999988765
No 151
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.14 E-value=0.73 Score=41.72 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=50.9
Q ss_pred CCCCCcEEEEEE--CCeEE----EeecccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcCCCCCCceeEEEEEEccc
Q 009787 32 NGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWDIIWKSTVLGSVIVTVES 101 (525)
Q Consensus 32 ~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~W~e~f~~~v~--~--~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~ 101 (525)
...+|-||.+.+ +++.. .|..+.-+..+.|||...|.+. + ....|.|+||+.+..+....+|.+.+++-+
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 345778888765 33322 4555555567899999999863 3 356699999998765567789999998876
Q ss_pred C
Q 009787 102 E 102 (525)
Q Consensus 102 l 102 (525)
.
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 5
No 152
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=92.08 E-value=5.2 Score=37.80 Aligned_cols=142 Identities=13% Similarity=0.221 Sum_probs=69.7
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEee---cCCCCCCcceeEeEEEE
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSL---CKSPIYPRDTAMTESQH 413 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~---~~~~~gpk~~~~~~~Q~ 413 (525)
-.+.++++|++++|..++.| .....++.. .+...+.-+..+..++ +.|..- ...++.++. ....++
T Consensus 51 k~~~~i~~~~~~v~~~l~~d-~~~~~~Wd~-------~~~~~~~i~~~d~~~~-i~y~~~~~~~~~~vs~RD--fV~~r~ 119 (208)
T cd08868 51 RLTGVLDCPAEFLYNELVLN-VESLPSWNP-------TVLECKIIQVIDDNTD-ISYQVAAEAGGGLVSPRD--FVSLRH 119 (208)
T ss_pred EEEEEEcCCHHHHHHHHHcC-ccccceecC-------cccceEEEEEecCCcE-EEEEEecCcCCCcccccc--eEEEEE
Confidence 45679999999999988864 322221111 1111111111112223 344321 112344443 222233
Q ss_pred EEecCCCCeEEEEEeeeeCCCCCCCeE-E---EEEEEEEEeeCC--CceEEEEEEeeeeEEEeecceeeeeeeechHHHH
Q 009787 414 AVLSPDKKIFVFETVQQAHDVPFGSYF-E---IHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKY 487 (525)
Q Consensus 414 ~~~~~~~~~~~v~~~~~~~~vPygd~F-~---v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~ 487 (525)
..... +.++++.....-+..|-..-| + ..+.|.|++.++ ++|.+... +.++..+|- -+.++.+.+....
T Consensus 120 ~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~---~~~Dp~G~i-P~~lvN~~~~~~~ 194 (208)
T cd08868 120 WGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWL---LNTDLKGWL-PQYLVDQALASVL 194 (208)
T ss_pred EEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEE---EEECCCCCC-cceeeehhhHHHH
Confidence 33333 334444333333566654443 2 558899999864 67888887 777776532 2333444444444
Q ss_pred HHHHHHH
Q 009787 488 KKEVELM 494 (525)
Q Consensus 488 ~~~~~~~ 494 (525)
.+.++.+
T Consensus 195 ~~~~~~L 201 (208)
T cd08868 195 LDFMKHL 201 (208)
T ss_pred HHHHHHH
Confidence 4444433
No 153
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=91.19 E-value=13 Score=34.73 Aligned_cols=151 Identities=14% Similarity=0.184 Sum_probs=81.8
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCC-CCCCcceeEeEEEEEE
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKS-PIYPRDTAMTESQHAV 415 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~-~~gpk~~~~~~~Q~~~ 415 (525)
-+..+++.++.++|..++.| .....++........+. +..++ +. +-+-+..+... |+.|+.--.. .+..
T Consensus 48 k~~~~v~~~~~~~~~~~~~d-~~~r~~Wd~~~~~~~~i----e~~~~-~~--~i~~~~~~~~~~p~~~RDfv~~--r~~~ 117 (206)
T smart00234 48 RAVGVVPMVCADLVEELMDD-LRYRPEWDKNVAKAETL----EVIDN-GT--VIYHYVSKFVAGPVSPRDFVFV--RYWR 117 (206)
T ss_pred EEEEEEecChHHHHHHHHhc-ccchhhCchhcccEEEE----EEECC-CC--eEEEEEEecccCcCCCCeEEEE--EEEE
Confidence 44678888898877777753 43333332222221111 11111 22 22233333333 5555542221 1122
Q ss_pred ecCCCCeEEEEEeeeeCCCCC-CCe---EEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHH
Q 009787 416 LSPDKKIFVFETVQQAHDVPF-GSY---FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEV 491 (525)
Q Consensus 416 ~~~~~~~~~v~~~~~~~~vPy-gd~---F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~ 491 (525)
...++.++++......+..|- ..+ ....+.|+|++.+++.|++... ..++..+| +-+.++...+.......+
T Consensus 118 ~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~---~~~D~~G~-iP~~lvn~~~~~~~~~~~ 193 (206)
T smart00234 118 ELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWV---SHADLKGW-LPHWLVRSLIKSGLAEFA 193 (206)
T ss_pred EcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEE---EEEecCCC-ccceeehhhhhhhHHHHH
Confidence 233444555444555566663 333 3456899999999889999998 88888775 346666665566666666
Q ss_pred HHHHHHHHHH
Q 009787 492 ELMLETARSY 501 (525)
Q Consensus 492 ~~~~~~~~~~ 501 (525)
+.|.+.+++.
T Consensus 194 ~~~~~~~~~~ 203 (206)
T smart00234 194 KTWVATLQKH 203 (206)
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 154
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=90.75 E-value=10 Score=35.18 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=74.7
Q ss_pred eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEe-ecCCCCCCcceeEeEEEEE
Q 009787 336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRS-LCKSPIYPRDTAMTESQHA 414 (525)
Q Consensus 336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~-~~~~~~gpk~~~~~~~Q~~ 414 (525)
.-...+++++++++|+++.. ...+.+|........+. +..++ + ..+.|.. ....|+.+...- ...+.
T Consensus 43 ~k~~~~i~~s~e~v~~vi~d--~e~~~~w~~~~~~~~vi----e~~~~-~---~~i~~~~~~~p~pvs~Rdfv--~~~~~ 110 (195)
T cd08876 43 FKAVAEVDASIEAFLALLRD--TESYPQWMPNCKESRVL----KRTDD-N---ERSVYTVIDLPWPVKDRDMV--LRSTT 110 (195)
T ss_pred EEEEEEEeCCHHHHHHHHhh--hHhHHHHHhhcceEEEe----ecCCC-C---cEEEEEEEecccccCCceEE--EEEEE
Confidence 34566899999999999864 44455554433222221 11111 1 2233332 211223333221 12222
Q ss_pred EecCCCCeEEEEEeeeeCCCCCCC----eEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHH
Q 009787 415 VLSPDKKIFVFETVQQAHDVPFGS----YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKE 490 (525)
Q Consensus 415 ~~~~~~~~~~v~~~~~~~~vPygd----~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~ 490 (525)
....++..++|.......++|-.. -+.....|.|+..++++|+|... ..+.+.+ .+.+.+|...+. +.
T Consensus 111 ~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~---~~~dp~g-~iP~~lv~~~~~----~~ 182 (195)
T cd08876 111 EQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQ---AYADPGG-SIPGWLANAFAK----DA 182 (195)
T ss_pred EEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEE---EEeCCCC-CCCHHHHHHHHH----HH
Confidence 222212355555554333355332 35667889999999999999998 8877754 334444444322 33
Q ss_pred HHHHHHHHHHH
Q 009787 491 VELMLETARSY 501 (525)
Q Consensus 491 ~~~~~~~~~~~ 501 (525)
...+++.+++.
T Consensus 183 ~~~~l~~l~~~ 193 (195)
T cd08876 183 PYNTLENLRKQ 193 (195)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 155
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=89.90 E-value=14 Score=33.05 Aligned_cols=143 Identities=12% Similarity=0.125 Sum_probs=83.9
Q ss_pred ceeeeeeeecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEE
Q 009787 335 VGIYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQH 413 (525)
Q Consensus 335 ~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~ 413 (525)
+...+.+.++|+++||.++.. ...++.+.. ..-+.-++..+.|.. ++..|.++|... ||. ...+|+
T Consensus 5 ~~~~E~~~~~~a~k~~ka~~~-~~~llpki~P~~i~sve~~eGdgg~----gGSIk~~~f~~~-----~~~---~~~Kek 71 (151)
T PF00407_consen 5 KLEVEVEVKVSADKLWKAFKS-SPHLLPKILPHVIKSVEVVEGDGGP----GGSIKKWTFGPG-----GPF---KYVKEK 71 (151)
T ss_dssp EEEEEEEESS-HHHHHHHHTT-HHHHHHHHSTTTEEEEEEEESSSST----TT-EEEEEEETT-----SSE---EEEEEE
T ss_pred EEEEEEEecCCHHHHHHHHhc-CccchhhhChhhceeEEEEccCCCC----CCeEEEEEecCC-----CCc---ceeEEE
Confidence 345677899999999999876 344455443 233445666788874 467899998762 442 345788
Q ss_pred EEecCCC-CeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeec-hHHHHHHHH
Q 009787 414 AVLSPDK-KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTG-AVNKYKKEV 491 (525)
Q Consensus 414 ~~~~~~~-~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~-~~~~~~~~~ 491 (525)
+...++. ..+.. +.---| +.+++.+-.....+.+.++++|.++.+ ++|.+.. +.. .-+...+.+
T Consensus 72 ve~~D~~~~~~~y--~viEGd-~l~~~~~~~~~~~~~~~~~g~~v~k~t-----~~Ye~~~------~~~~~p~~~~~~~ 137 (151)
T PF00407_consen 72 VEAIDEENKTITY--TVIEGD-VLGDYKSFKSTIQKIPKGDGGCVVKWT-----IEYEKKG------EDVPPPEKYLDFA 137 (151)
T ss_dssp EEEEETTTTEEEE--EEEEET-TGTTTEEEEEEEEEEEETTSCEEEEEE-----EEEEESS------TSCHHHHHHHHHH
T ss_pred EEeecCCCcEEEE--EEEecc-ccccEEEEEEEEEecCCCCCceEEEEE-----EEEEecC------CCCCCcHHHHHHH
Confidence 8764433 33333 222123 344555555555555777777877776 5555521 222 345566667
Q ss_pred HHHHHHHHHHHhh
Q 009787 492 ELMLETARSYIKI 504 (525)
Q Consensus 492 ~~~~~~~~~~~~~ 504 (525)
..+++.++.++-+
T Consensus 138 ~~~~K~ieayLla 150 (151)
T PF00407_consen 138 VGMFKAIEAYLLA 150 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777654
No 156
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=89.88 E-value=7 Score=37.06 Aligned_cols=143 Identities=9% Similarity=0.049 Sum_probs=73.3
Q ss_pred eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCC---CCCcceeEeEEEEE
Q 009787 338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSP---IYPRDTAMTESQHA 414 (525)
Q Consensus 338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~---~gpk~~~~~~~Q~~ 414 (525)
.+.++++++++++..+|.|-.. ..++. -.+..-+.-...+..+. +.|..-...| +.++.. ...+..
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e~-~~~W~-------~~~~~~~vl~~id~~~~-i~y~~~~p~p~~~vs~RD~--V~~~~~ 121 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRMEQ-MGEWN-------PNVKEVKILQRIGKDTL-ITHEVAAETAGNVVGPRDF--VSVRCA 121 (209)
T ss_pred EEEEecCCHHHHHHHHHhchhh-hceec-------ccchHHHHHhhcCCCce-EEEEEeccCCCCccCccce--EEEEEE
Confidence 6789999999999888874221 11111 11111111011111122 3333222223 444432 223333
Q ss_pred EecCCCCeEEEEEeeeeCCCCCCCe----EEEEEEEEEEeeCC--CceEEEEEEeeeeEEEeecceeeeeeeechHHHHH
Q 009787 415 VLSPDKKIFVFETVQQAHDVPFGSY----FEIHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYK 488 (525)
Q Consensus 415 ~~~~~~~~~~v~~~~~~~~vPygd~----F~v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~ 488 (525)
... ++.++++......+.+|--.- ....+.|.|++.++ ++|++... +.++..++ +-+.++.+...+...
T Consensus 122 ~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~---~~~DpkG~-iP~~lvN~~~~~~~~ 196 (209)
T cd08905 122 KRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWL---LSIDLKGW-LPKSIINQVLSQTQV 196 (209)
T ss_pred EEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEE---EeecCCCC-CCHHHHHHHhHHhHH
Confidence 333 344566666655566654333 33668999999866 78999888 77776553 334445544444444
Q ss_pred HHHHHHHH
Q 009787 489 KEVELMLE 496 (525)
Q Consensus 489 ~~~~~~~~ 496 (525)
+.++.|-+
T Consensus 197 ~~~~~Lr~ 204 (209)
T cd08905 197 DFANHLRQ 204 (209)
T ss_pred HHHHHHHH
Confidence 44444433
No 157
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.69 E-value=1.6 Score=39.94 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=61.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----Eeeccc----CCCCCeeccEEEEEec--C--CCcEEEE
Q 009787 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVP----GSRYPMWGEEFNFSVD--E--LPVQIIV 78 (525)
Q Consensus 13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~----~t~nP~W~e~f~~~v~--~--~~~~L~~ 78 (525)
...+.|+|..+.+++........|-|+.+.+ +++.. .|+... -...+.|||...|.+. . ...+|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3468899999999987765556788888864 43322 333211 1235789999998853 3 2456999
Q ss_pred EEEEcCCCC---------CCceeEEEEEEcccC
Q 009787 79 TIYDWDIIW---------KSTVLGSVIVTVESE 102 (525)
Q Consensus 79 ~V~d~d~~~---------~dd~iG~~~i~l~~l 102 (525)
++|+....+ .+..||.+.++|=+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976543 346889888887765
No 158
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=89.23 E-value=6.5 Score=36.73 Aligned_cols=146 Identities=14% Similarity=0.225 Sum_probs=81.7
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEE---eecCCCCCCcceeEeEEEE
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR---SLCKSPIYPRDTAMTESQH 413 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~---~~~~~~~gpk~~~~~~~Q~ 413 (525)
-+..+++.++.++|..++.+.. .+..... ...--+.-++ + ..+.|. .|.-.|+.|+..-+ .+.
T Consensus 49 k~~~~v~~~~~~~~~~~~~~~~----~Wd~~~~----~~~~le~~~~-~---~~i~~~~~~~~~~~p~~~RDfv~--~~~ 114 (206)
T PF01852_consen 49 KAEGVVPASPEQVVEDLLDDRE----QWDKMCV----EAEVLEQIDE-D---TDIVYFVMKSPWPGPVSPRDFVF--LRS 114 (206)
T ss_dssp EEEEEESSCHHHHHHHHHCGGG----HHSTTEE----EEEEEEEEET-T---EEEEEEEEE-CTTTTSSEEEEEE--EEE
T ss_pred EEEEEEcCChHHHHHHHHhhHh----hcccchh----hheeeeecCC-C---CeEEEEEecccCCCCCCCcEEEE--EEE
Confidence 3457899999999999988533 2211111 1111111122 2 223332 23222555543222 222
Q ss_pred EEecCCCCeEEEEEeeeeCCCCC--CCeEEE---EEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHH
Q 009787 414 AVLSPDKKIFVFETVQQAHDVPF--GSYFEI---HGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYK 488 (525)
Q Consensus 414 ~~~~~~~~~~~v~~~~~~~~vPy--gd~F~v---~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~ 488 (525)
.....++.++++......+..|- .++-++ ...|+|++.+++.|++... ..++..+|.. +.++..-+.....
T Consensus 115 ~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~---~~~D~~G~iP-~~~~n~~~~~~~~ 190 (206)
T PF01852_consen 115 WRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYV---SQVDPKGWIP-SWLVNMVVKSQPP 190 (206)
T ss_dssp EEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEE---EEEESSSSSH-HHHHHHHHHHHHH
T ss_pred EEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEE---EEECCCCCCh-HHHHHHHHHHhHH
Confidence 22245666777777777777774 455554 3679999999999999998 8887766443 3334443444555
Q ss_pred HHHHHHHHHHHH
Q 009787 489 KEVELMLETARS 500 (525)
Q Consensus 489 ~~~~~~~~~~~~ 500 (525)
+.++.+.+.+++
T Consensus 191 ~~~~~~~~~~~~ 202 (206)
T PF01852_consen 191 NFLKNLRKALKK 202 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555554
No 159
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=88.83 E-value=9.6 Score=34.80 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=65.6
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 416 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 416 (525)
-...++++|+++++.+++.. ....++-. .+.....-..-+.+.......|..| .|+.|+..-+... ...
T Consensus 42 k~~~~i~~~~~~v~~~l~d~--~~~~~w~~-----~~~~~~vl~~~~~~~~i~~~~~~~p--~p~~~Rdfv~~~~--~~~ 110 (193)
T cd00177 42 KAEGVIPASPEQVFELLMDI--DLRKKWDK-----NFEEFEVIEEIDEHTDIIYYKTKPP--WPVSPRDFVYLRR--RRK 110 (193)
T ss_pred EEEEEECCCHHHHHHHHhCC--chhhchhh-----cceEEEEEEEeCCCeEEEEEEeeCC--CccCCccEEEEEE--EEE
Confidence 45779999999999999862 22222211 1111111111111112222233333 3466665333222 222
Q ss_pred cCCCCeEEEEEeeeeCCCCCC-CeEEEEE---EEEEEeeCCCceEEEEEEeeeeEEEeec
Q 009787 417 SPDKKIFVFETVQQAHDVPFG-SYFEIHG---RWHLETIAENSSTIDIKVVSAGAHFKKW 472 (525)
Q Consensus 417 ~~~~~~~~v~~~~~~~~vPyg-d~F~v~~---r~~i~~~~~~~~~l~v~~~~~~V~f~K~ 472 (525)
..++.++++......+.+|-. ++-+... -|+|+..++++|++... +.++..++
T Consensus 111 ~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~---~~~D~~g~ 167 (193)
T cd00177 111 LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYV---LQVDPKGS 167 (193)
T ss_pred cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEE---EeeCCCCC
Confidence 224556666555544446654 5555443 49999998899999998 88877664
No 160
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=88.56 E-value=18 Score=33.88 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=64.3
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 416 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 416 (525)
-.+.+++.++++++.+++.. ++..|-.+..++.-+..+.....+-|..+...|+.++..-... .....
T Consensus 47 K~~~~v~a~~~~v~~~l~d~-----------r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r-~~~~~ 114 (197)
T cd08869 47 RASTEVEAPPEEVLQRILRE-----------RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLR-TWRTD 114 (197)
T ss_pred EEEEEeCCCHHHHHHHHHHH-----------HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEE-EEEec
Confidence 45778999999999988641 2333333333333211111223333444433344333321111 12222
Q ss_pred cCCCCeEEEEEeeee-CCCCCCCe---EEEEEEEEEEeeCCCceEEEEEEeeeeEEEee
Q 009787 417 SPDKKIFVFETVQQA-HDVPFGSY---FEIHGRWHLETIAENSSTIDIKVVSAGAHFKK 471 (525)
Q Consensus 417 ~~~~~~~~v~~~~~~-~~vPygd~---F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K 471 (525)
..++.+++....... ..+|- ++ +...+.|.|++.++++|+|... +.++..+
T Consensus 115 ~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~~~t~vty~---~~~Dp~G 169 (197)
T cd08869 115 LPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGSGKSRVTHI---CRVDLRG 169 (197)
T ss_pred CCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCCCCeEEEEE---EEECCCC
Confidence 334434444333322 25655 53 5556889999999899999998 8888877
No 161
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=87.39 E-value=18 Score=31.12 Aligned_cols=139 Identities=11% Similarity=0.025 Sum_probs=71.3
Q ss_pred eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEec
Q 009787 338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 417 (525)
Q Consensus 338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 417 (525)
.+.++++|++++|.++-+ ..-+.++.-.... +. +. ++ +. ..+..... +||........=.+...
T Consensus 5 ~~~~i~a~~e~v~~~l~D--~~~~~~w~p~~~~--~~---~~--~~-~~--~~~~~~~~----~~~~~~~~~~~~~~~~~ 68 (144)
T cd05018 5 GEFRIPAPPEEVWAALND--PEVLARCIPGCES--LE---KI--GP-NE--YEATVKLK----VGPVKGTFKGKVELSDL 68 (144)
T ss_pred eEEEecCCHHHHHHHhcC--HHHHHhhccchhh--cc---cc--CC-Ce--EEEEEEEE----EccEEEEEEEEEEEEec
Confidence 356899999999999954 3334444321111 11 11 11 11 11222221 24432222211122222
Q ss_pred CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHHH
Q 009787 418 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET 497 (525)
Q Consensus 418 ~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~ 497 (525)
.+...+.+..... +.+.......+|.|+.. +++|+|... ..+.+.. .++.+...-.-.-..+.+...++.
T Consensus 69 ~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~-~~gT~v~~~---~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~ 138 (144)
T cd05018 69 DPPESYTITGEGK----GGAGFVKGTARVTLEPD-GGGTRLTYT---ADAQVGG--KLAQLGSRLIDGAARKLINQFFEN 138 (144)
T ss_pred CCCcEEEEEEEEc----CCCceEEEEEEEEEEec-CCcEEEEEE---EEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHH
Confidence 2234566654332 12456789999999998 678999988 7777643 344444333333444555555555
Q ss_pred HHHHH
Q 009787 498 ARSYI 502 (525)
Q Consensus 498 ~~~~~ 502 (525)
+++.+
T Consensus 139 l~~~~ 143 (144)
T cd05018 139 LASKI 143 (144)
T ss_pred HHHhh
Confidence 55543
No 162
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=86.74 E-value=16 Score=31.15 Aligned_cols=103 Identities=11% Similarity=0.118 Sum_probs=53.0
Q ss_pred eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787 336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV 415 (525)
Q Consensus 336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~ 415 (525)
.....++++|++.+|+++-. ..-+..+.. +...+. +.......+..|.+.+. .| ....+++.
T Consensus 3 i~~~~~i~a~~~~V~~~l~d--~~~~~~w~~--~~~~~~---~~~~~~~~g~~~~~~~~------~g-----~~~~~~i~ 64 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSD--FGGLHKWHP--AVASCE---LEGGGPGVGAVRTVTLK------DG-----GTVRERLL 64 (140)
T ss_pred EEEEEEECCCHHHHHHHHhC--cCchhhhcc--CcceEE---eecCCCCCCeEEEEEeC------CC-----CEEEEEeh
Confidence 34567999999999999975 222233322 112222 21111112334433322 22 11233444
Q ss_pred ecCCC-CeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEE
Q 009787 416 LSPDK-KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIK 461 (525)
Q Consensus 416 ~~~~~-~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~ 461 (525)
...+. ..+.+..... +.|+. .....|.|+..++++|+|...
T Consensus 65 ~~~~~~~~i~~~~~~~--~~~~~---~~~~~~~~~~~~~~~t~v~~~ 106 (140)
T cd07821 65 ALDDAERRYSYRIVEG--PLPVK---NYVATIRVTPEGDGGTRVTWT 106 (140)
T ss_pred hcCccCCEEEEEecCC--CCCcc---cceEEEEEEECCCCccEEEEE
Confidence 32232 4555543321 24432 457889999988878888777
No 163
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=85.76 E-value=7.6 Score=35.81 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=42.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE---EeecccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcC
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR---FSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWD 84 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~---kT~~~~~t~nP~W~e~f~~~v~--~--~~~~L~~~V~d~d 84 (525)
.++|+|..+..+. .+......-||.+.+ ++... +|....-+.+|.|||...|++. + ...+|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4677888876432 222222334555433 33322 4555555667999999888853 3 3567999999964
No 164
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=85.22 E-value=29 Score=32.84 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=73.0
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecC---CCCCCcceeEeEEEE
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK---SPIYPRDTAMTESQH 413 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~---~~~gpk~~~~~~~Q~ 413 (525)
-.+.++++|++.+|..+|.|- .... .++-.+..=+.-...+...+ +.|..... .|+.++. ......
T Consensus 52 k~~~~v~~~~~~l~~~ll~D~-~~~~-------~W~~~~~~~~vi~~~~~~~~-i~Y~v~~p~~~~pv~~RD--fV~~r~ 120 (209)
T cd08906 52 ILKAFMQCPAELVYQEVILQP-EKMV-------LWNKTVSACQVLQRVDDNTL-VSYDVAAGAAGGVVSPRD--FVNVRR 120 (209)
T ss_pred EEEEEEcCCHHHHHHHHHhCh-hhcc-------ccCccchhhhheeeccCCcE-EEEEEccccccCCCCCCc--eEEEEE
Confidence 567899999999998777642 2111 11111111111111111222 34532211 2333333 222233
Q ss_pred EEecCCCCeEEEEEeeeeCCCCCCC-eEEEE---EEEEEEe--eCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHH
Q 009787 414 AVLSPDKKIFVFETVQQAHDVPFGS-YFEIH---GRWHLET--IAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKY 487 (525)
Q Consensus 414 ~~~~~~~~~~~v~~~~~~~~vPygd-~F~v~---~r~~i~~--~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~ 487 (525)
..... +.++.+......+.+|--. +-+++ +.|.+.. .++++|++... +.++..+ .+=+.+|.+...+..
T Consensus 121 ~~~~~-~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~---~~~Dp~G-~lP~~lvN~~~~~~~ 195 (209)
T cd08906 121 IERRR-DRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWI---LNTDLKG-RLPRYLIHQSLAATM 195 (209)
T ss_pred EEecC-CcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE---EecCCCC-CCCHHHHHHHHHHHH
Confidence 33333 3356666666656666444 44444 4555555 46778988887 7776655 334556666555555
Q ss_pred HHHHHHHHHHH
Q 009787 488 KKEVELMLETA 498 (525)
Q Consensus 488 ~~~~~~~~~~~ 498 (525)
.+.++.|-+.+
T Consensus 196 ~~~~~~LR~~~ 206 (209)
T cd08906 196 FEFASHLRQRI 206 (209)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 165
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=84.85 E-value=4.7 Score=32.63 Aligned_cols=48 Identities=19% Similarity=0.497 Sum_probs=33.5
Q ss_pred ceeEEEeCCeEEEEecCCCceeEEEEeecccee-ccccccc--cCcEEEEE
Q 009787 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQHAFI--NPAITIIL 239 (525)
Q Consensus 192 ~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~~~~~--~~~i~i~~ 239 (525)
.|++|+|.++|+|--+.-.....+.+|+.+|.. +...+++ ++.|.+.+
T Consensus 37 ~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~~sSpKI~l~l 87 (89)
T PF11605_consen 37 NGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFLKSSPKIILHL 87 (89)
T ss_dssp CEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STTSSS-EEEEEE
T ss_pred CCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEccccCCCCeEEEEe
Confidence 499999999999975543334468899999999 5555554 34566665
No 166
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=84.45 E-value=11 Score=35.18 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=38.6
Q ss_pred EEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC-CC---CceeEEEEEEcc
Q 009787 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-WK---STVLGSVIVTVE 100 (525)
Q Consensus 47 ~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~-~~---dd~iG~~~i~l~ 100 (525)
..+|-+...+.+|.|+|++.+.++. ....|.|++++.... .+ ...+|-+.++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4577787889999999999999864 355699999885421 11 245676666665
No 167
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=83.76 E-value=39 Score=31.83 Aligned_cols=149 Identities=10% Similarity=0.119 Sum_probs=81.0
Q ss_pred eeeeee-ecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787 337 IYNDVF-PCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV 415 (525)
Q Consensus 337 ~~~~~~-~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~ 415 (525)
....+| ++|++.|++++.. ..+..++-.......+- +..+. ...+.+-|.....-|+.++..-.. .+..
T Consensus 53 k~~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~~~~l----e~~~~--~~~~i~y~~~~~P~P~s~RD~V~~--r~~~ 122 (209)
T cd08870 53 LVRGVFEDCTPELLRDFYWD--DEYRKKWDETVIEHETL----EEDEK--SGTEIVRWVKKFPFPLSDREYVIA--RRLW 122 (209)
T ss_pred EEEEEEcCCCHHHHHHHHcC--hhhHhhhhhheeeEEEE----EecCC--CCcEEEEEEEECCCcCCCceEEEE--EEEE
Confidence 445678 6799999999976 44444443332222211 11111 013444444443445666543222 2222
Q ss_pred ecCCCCeEEEEEeeeeCCCCCCCeEE---EEEEEEEEee--CCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHH
Q 009787 416 LSPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETI--AENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKE 490 (525)
Q Consensus 416 ~~~~~~~~~v~~~~~~~~vPygd~F~---v~~r~~i~~~--~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~ 490 (525)
...++.++++.....-+.+|-.+.-+ ....|+|++. ++++|.+.+. +...- +..+-+.++...+..+....
T Consensus 123 ~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~---~~~dp-~G~IP~wlvN~~~~~~~~~~ 198 (209)
T cd08870 123 ESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVT---YFHNP-DGGIPRELAKLAVKRGMPGF 198 (209)
T ss_pred EcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEE---EEECC-CCCCCHHHHHHHHHhhhHHH
Confidence 23245555555555556788753333 4578999998 6778888877 55542 44444555555555566566
Q ss_pred HHHHHHHHH
Q 009787 491 VELMLETAR 499 (525)
Q Consensus 491 ~~~~~~~~~ 499 (525)
++.|-+.++
T Consensus 199 l~~l~~a~~ 207 (209)
T cd08870 199 LKKLENALR 207 (209)
T ss_pred HHHHHHHHh
Confidence 665555444
No 168
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=83.15 E-value=12 Score=33.09 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=39.2
Q ss_pred EeecccCC-CCCeeccEEEEEec--C--CCcEEEEEEEEcCCCCCC----ceeEEEEEEcccC
Q 009787 49 FSSMVPGS-RYPMWGEEFNFSVD--E--LPVQIIVTIYDWDIIWKS----TVLGSVIVTVESE 102 (525)
Q Consensus 49 kT~~~~~t-~nP~W~e~f~~~v~--~--~~~~L~~~V~d~d~~~~d----d~iG~~~i~l~~l 102 (525)
.|....-+ .++.|+|...|.+. + ....|.|+||..+..... ..||.+.+++-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 45555444 79999999999863 3 356799999998765554 6899999998776
No 169
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=82.56 E-value=33 Score=30.03 Aligned_cols=72 Identities=10% Similarity=-0.008 Sum_probs=43.2
Q ss_pred CCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEee--cceeeeeeeechHHHHHHHHHHHHHH
Q 009787 420 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKK--WCVIQFKIKTGAVNKYKKEVELMLET 497 (525)
Q Consensus 420 ~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K--~~~~K~~Ie~~~~~~~~~~~~~~~~~ 497 (525)
...+.+.-. -.+.+-+....+...|.++. .+++|+|.+. ..+.... ..+++.+|.+ -..+.++.+++.
T Consensus 70 ~~~~~~~~~--g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~---~~~~~~g~l~~l~~~~v~~----~~~~~~~~~~~~ 139 (146)
T cd07823 70 ARRAVLEAT--GKDARGQGTAEATVTLRLSP-AGGGTRVTVD---TDLALTGKLAQFGRGGIGD----VAGRLLAQFAAN 139 (146)
T ss_pred CcEEEEEEE--EecCCCcceEEEEEEEEEEe-cCCcEEEEEE---EEEEEeeEhHHhChhHHHH----HHHHHHHHHHHH
Confidence 345554422 23345556668899999998 5578999999 8887765 3455444444 334444444444
Q ss_pred HHHH
Q 009787 498 ARSY 501 (525)
Q Consensus 498 ~~~~ 501 (525)
+++.
T Consensus 140 l~~~ 143 (146)
T cd07823 140 LEAR 143 (146)
T ss_pred HHHH
Confidence 4444
No 170
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=81.53 E-value=23 Score=33.43 Aligned_cols=119 Identities=12% Similarity=0.132 Sum_probs=65.6
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 416 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 416 (525)
-...+++.++.++..++..+ ..-|.. .+..|..-+..+.....+-|.....-|+-++.. |........
T Consensus 55 r~~~~i~a~~~~vl~~lld~-~~~Wd~----------~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~-V~~Rs~~~~ 122 (204)
T cd08908 55 RTTIEVPAAPEEILKRLLKE-QHLWDV----------DLLDSKVIEILDSQTEIYQYVQNSMAPHPARDY-VVLRTWRTN 122 (204)
T ss_pred EEEEEeCCCHHHHHHHHHhh-HHHHHH----------HhhheEeeEecCCCceEEEEEccCCCCCCCcEE-EEEEEEEEe
Confidence 45678999999999988764 211222 112222211212223334444332233333322 222122222
Q ss_pred cCCCCeEEEEEeeeeCCCCCCCeEE---EEEEEEEEeeCCCceEEEEEEeeeeEEEee
Q 009787 417 SPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETIAENSSTIDIKVVSAGAHFKK 471 (525)
Q Consensus 417 ~~~~~~~~v~~~~~~~~vPygd~F~---v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K 471 (525)
..++.+.++..+..-..+|-. .-+ +.++|.|++.++++|+|.-- ++++..+
T Consensus 123 ~~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g~g~t~vtyi---~~~DPgG 176 (204)
T cd08908 123 LPKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCGSGKSKLTYM---CRIDLRG 176 (204)
T ss_pred CCCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEECCCCcEEEEEE---EEeCCCC
Confidence 344545444443666778855 444 47899999999999999998 8887765
No 171
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=80.85 E-value=20 Score=33.38 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=38.7
Q ss_pred EEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC--CceeEEEEEEccc
Q 009787 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK--STVLGSVIVTVES 101 (525)
Q Consensus 47 ~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~--dd~iG~~~i~l~~ 101 (525)
.++|-+...+.+|.|+|++.+.++. ....|.|++++.....+ ...+|-+.++|-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 4578888889999999999999864 35569998888542211 1456666666643
No 172
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.76 E-value=8.5 Score=35.61 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=33.6
Q ss_pred EEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCC---ceeEEEEEEcccC
Q 009787 48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKS---TVLGSVIVTVESE 102 (525)
Q Consensus 48 ~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~d---d~iG~~~i~l~~l 102 (525)
..|.+..++.+|.|+|+|.+.++. ....|.|++++...-.+. ..+|-+.++|.+-
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~ 121 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDN 121 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-T
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeC
Confidence 457777888999999999999864 245699999997543221 5899999988873
No 173
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=80.69 E-value=38 Score=31.97 Aligned_cols=117 Identities=9% Similarity=0.113 Sum_probs=64.3
Q ss_pred eeeeee-cCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787 338 YNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 416 (525)
Q Consensus 338 ~~~~~~-~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 416 (525)
...+|+ +|++.|++++.+ ..+..++-..... -+.. ..+ + .+.+-+.....-|+.++..-+... ....
T Consensus 53 ~~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~-~~~~-----~~~-~--~~i~y~~~k~PwPvs~RD~V~~r~-~~~~ 120 (207)
T cd08910 53 VFGVLEDCSPSLLADVYMD--LEYRKQWDQYVKE-LYEK-----ECD-G--ETVIYWEVKYPFPLSNRDYVYIRQ-RRDL 120 (207)
T ss_pred EEEEEcCCCHHHHHHHHhC--HHHHHHHHHHHHh-heee-----cCC-C--CEEEEEEEEcCCCCCCceEEEEEE-eccc
Confidence 366888 899999999975 4443333322211 0111 111 1 233333454445677765432222 1222
Q ss_pred cCCCC-e-EEEEEeeeeCCCCCCCeE----EEEEEEEEEeeCCCceEEEEEEeeeeEEE
Q 009787 417 SPDKK-I-FVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVVSAGAHF 469 (525)
Q Consensus 417 ~~~~~-~-~~v~~~~~~~~vPygd~F----~v~~r~~i~~~~~~~~~l~v~~~~~~V~f 469 (525)
..++. . +++.....-+.+|-.+-| .....|+|++.++++|++... +..+-
T Consensus 121 ~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~---~~~DP 176 (207)
T cd08910 121 DVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMY---YFDNP 176 (207)
T ss_pred cCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEE---EEeCC
Confidence 22332 2 334444555677765544 367889999888888998888 66654
No 174
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=80.07 E-value=12 Score=30.88 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=44.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----EeecccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcC
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWD 84 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~W~e~f~~~v~--~--~~~~L~~~V~d~d 84 (525)
+.+.+....++........++-|+.+.+ +++.. .|..+.-...+.|||...|.+. + ....|.|.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566677777655443333578888865 43322 4544444556999999988753 3 3556999999864
No 175
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=79.81 E-value=53 Score=31.77 Aligned_cols=114 Identities=9% Similarity=0.002 Sum_probs=62.0
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcC-CcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARK-DSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV 415 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~-~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~ 415 (525)
-.+.++++|++++|++|.+ .....++-.... ...|..-. ++ ...+..+.|..-|+.|+.--.. .....
T Consensus 80 k~e~~vd~s~~~v~dlL~D--~~~R~~WD~~~~e~evI~~id----~d----~~iyy~~~p~PwPvk~RDfV~~-~s~~~ 148 (235)
T cd08873 80 CVELKVQTCASDAFDLLSD--PFKRPEWDPHGRSCEEVKRVG----ED----DGIYHTTMPSLTSEKPNDFVLL-VSRRK 148 (235)
T ss_pred EEEEEecCCHHHHHHHHhC--cchhhhhhhcccEEEEEEEeC----CC----cEEEEEEcCCCCCCCCceEEEE-EEEEe
Confidence 4567799999999999965 322222222111 12222111 11 1323333443335666653222 22222
Q ss_pred ecCCCCeEEEEEeeee-CCCCCCCeE----EEEEEEEEEeeCCCceEEEEE
Q 009787 416 LSPDKKIFVFETVQQA-HDVPFGSYF----EIHGRWHLETIAENSSTIDIK 461 (525)
Q Consensus 416 ~~~~~~~~~v~~~~~~-~~vPygd~F----~v~~r~~i~~~~~~~~~l~v~ 461 (525)
...++..|+|...... +.+|-..-| .+.+.|.|++.++++|+|...
T Consensus 149 ~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~ 199 (235)
T cd08873 149 PATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYY 199 (235)
T ss_pred ccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEE
Confidence 2333344666666555 556555444 367899999999999999887
No 176
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=78.47 E-value=26 Score=33.85 Aligned_cols=152 Identities=11% Similarity=0.082 Sum_probs=77.3
Q ss_pred eeeeee-cCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787 338 YNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 416 (525)
Q Consensus 338 ~~~~~~-~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 416 (525)
...+++ +++++++++|+. ..+..++-... .....-+..+...+-+-+....--|+-++..- ....+..
T Consensus 56 a~~~v~~vt~~~~~~~l~D--~~~r~~Wd~~~-------~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V--~~~~~~~ 124 (235)
T cd08872 56 ATHAVKGVTGHEVCHYFFD--PDVRMDWETTL-------ENFHVVETLSQDTLIFHQTHKRVWPAAQRDAL--FVSHIRK 124 (235)
T ss_pred EEEEECCCCHHHHHHHHhC--hhhHHHHHhhh-------heeEEEEecCCCCEEEEEEccCCCCCCCcEEE--EEEEEEe
Confidence 344666 999999999986 43333322221 11211111111223332233322334444321 1222222
Q ss_pred cCC-------CCeEEEEEeeeeCCCCCC-CeEEEEE---------------EEEEEeeCCCceEEEEEEeeeeEEEeecc
Q 009787 417 SPD-------KKIFVFETVQQAHDVPFG-SYFEIHG---------------RWHLETIAENSSTIDIKVVSAGAHFKKWC 473 (525)
Q Consensus 417 ~~~-------~~~~~v~~~~~~~~vPyg-d~F~v~~---------------r~~i~~~~~~~~~l~v~~~~~~V~f~K~~ 473 (525)
..+ +.++++.....-+++|-. ++-++.. .|.+++ .+.+|++... +.++.-+|
T Consensus 125 ~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~---~~~dPgG~- 199 (235)
T cd08872 125 IPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYV---ANVNPGGW- 199 (235)
T ss_pred cCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEE---EEeCCCCC-
Confidence 211 334666666666777766 6666764 255555 4567888877 66665442
Q ss_pred eeeeeeeechHHHHHHHHHHHHHHHHHHHhhc
Q 009787 474 VIQFKIKTGAVNKYKKEVELMLETARSYIKIC 505 (525)
Q Consensus 474 ~~K~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (525)
+-..+|..-+..+.-+.++.+=+.|.+..+.+
T Consensus 200 iP~wvvn~~~k~~~P~~l~~~~~~~~~~~~~~ 231 (235)
T cd08872 200 APASVLRAVYKREYPKFLKRFTSYVQEKTKGK 231 (235)
T ss_pred ccHHHHHHHHHhhchHHHHHHHHHHHHhcCCC
Confidence 22444555555566666666666666655543
No 177
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=78.01 E-value=63 Score=30.49 Aligned_cols=148 Identities=11% Similarity=0.028 Sum_probs=71.5
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeec--CCCCCCcceeEeEEEEE
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLC--KSPIYPRDTAMTESQHA 414 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~--~~~~gpk~~~~~~~Q~~ 414 (525)
-.+.+++++++++|.+++.....+-.+....... ...-.. .+..+..+.+..|- ...+.|+.-- ..+..
T Consensus 49 k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~-----~~vle~--id~~~~i~~~~~p~~~~~~vs~RDfV--~~~~~ 119 (208)
T cd08903 49 KGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD-----FEVVEA--ISDDVSVCRTVTPSAAMKIISPRDFV--DVVLV 119 (208)
T ss_pred EEEEEecCCHHHHHHHHHhccchhhhhhhhcccc-----EEEEEE--ecCCEEEEEEecchhcCCCcCCCceE--EEEEE
Confidence 4788999999999999985322211122111111 111111 11122222222331 1225555432 22333
Q ss_pred EecCCCCeEEEEEeeeeC-CCC-CCCeEEEEE---EEEEEee--CCCceEEEEEEeeeeEEEeecceeeeeeeechHHHH
Q 009787 415 VLSPDKKIFVFETVQQAH-DVP-FGSYFEIHG---RWHLETI--AENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKY 487 (525)
Q Consensus 415 ~~~~~~~~~~v~~~~~~~-~vP-ygd~F~v~~---r~~i~~~--~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~ 487 (525)
....++ +|++....... ..| -.++.+++. -|.+... ++++|.+... +.+++.+ .+-+.+|.+...+..
T Consensus 120 ~~~~d~-~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~---~~~DpkG-~iP~~lvn~~~~~~~ 194 (208)
T cd08903 120 KRYEDG-TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSF---FQTDLSG-YLPQTVVDSFFPASM 194 (208)
T ss_pred EecCCc-eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE---EEeccCC-CcCHHHHHHHhhHHH
Confidence 334433 45554322222 333 356666633 3455555 5678999998 8888854 233555555444555
Q ss_pred HHHHHHHHHHH
Q 009787 488 KKEVELMLETA 498 (525)
Q Consensus 488 ~~~~~~~~~~~ 498 (525)
...+..+-+.+
T Consensus 195 ~~~~~~Lr~~~ 205 (208)
T cd08903 195 AEFYNNLTKAV 205 (208)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 178
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=77.70 E-value=64 Score=30.46 Aligned_cols=118 Identities=11% Similarity=0.051 Sum_probs=62.6
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCC--CCcceeEeEEEEE
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPI--YPRDTAMTESQHA 414 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~--gpk~~~~~~~Q~~ 414 (525)
..+.++++|+++++++|-+ .....++.......++- . +. +...+.+.++.+..-|+ -|+.--+ .+..
T Consensus 48 ~ge~~v~as~~~v~~ll~D--~~~r~~Wd~~~~~~~vl--~-~~----~~d~~i~y~~~~~Pwp~~~~~RDfV~--l~~~ 116 (205)
T cd08874 48 LGAGVIKAPLATVWKAVKD--PRTRFLYDTMIKTARIH--K-TF----TEDICLVYLVHETPLCLLKQPRDFCC--LQVE 116 (205)
T ss_pred EEEEEEcCCHHHHHHHHhC--cchhhhhHHhhhheeee--e-ec----CCCeEEEEEEecCCCCCCCCCCeEEE--EEEE
Confidence 4577999999999999954 32222222222222222 1 11 12234444444422222 4443222 2333
Q ss_pred EecCCCCeEEEEEeeeeC-CCCCC-----CeEEEEEEEEEEee---CCCceEEEEEEeeeeEEEe
Q 009787 415 VLSPDKKIFVFETVQQAH-DVPFG-----SYFEIHGRWHLETI---AENSSTIDIKVVSAGAHFK 470 (525)
Q Consensus 415 ~~~~~~~~~~v~~~~~~~-~vPyg-----d~F~v~~r~~i~~~---~~~~~~l~v~~~~~~V~f~ 470 (525)
.. .++.++ |....... .+|-- --+.+.+.|.|++. ++++|+|.-. ++++=.
T Consensus 117 ~~-~~~~~v-i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~---~q~DPg 176 (205)
T cd08874 117 AK-EGELSV-VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYI---AQVALC 176 (205)
T ss_pred EE-CCCcEE-EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEE---EEECCC
Confidence 32 333344 44433333 56522 34677899999999 7788998887 666543
No 179
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=77.09 E-value=51 Score=31.12 Aligned_cols=142 Identities=10% Similarity=0.078 Sum_probs=72.1
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeec---CCCCCCcceeEeEEEE
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLC---KSPIYPRDTAMTESQH 413 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~---~~~~gpk~~~~~~~Q~ 413 (525)
-++.+++++++++|++|+.. ....+ -+.++....+-.. .+..+ .+.|..-- ...++|+.- ...++
T Consensus 49 k~egvi~~~~e~v~~~l~~~--e~r~~-----Wd~~~~~~~iie~--Id~~T-~I~~~~~~~~~~~~vspRDf--V~vr~ 116 (204)
T cd08904 49 RVEGIIPESPAKLIQFMYQP--EHRIK-----WDKSLQVYKMLQR--IDSDT-FICHTITQSFAMGSISPRDF--VDLVH 116 (204)
T ss_pred EEEEEecCCHHHHHHHHhcc--chhhh-----hcccccceeeEEE--eCCCc-EEEEEecccccCCcccCceE--EEEEE
Confidence 56789999999999998762 11111 1112222222211 11111 34443211 122666642 22222
Q ss_pred EEecCCCCeEEEEEeeeeCCCC-CCC---eEEEEEEEEEEeeCC--CceEEEEEEeeeeEEEeecceeeeeeeechHHHH
Q 009787 414 AVLSPDKKIFVFETVQQAHDVP-FGS---YFEIHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKY 487 (525)
Q Consensus 414 ~~~~~~~~~~~v~~~~~~~~vP-ygd---~F~v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~ 487 (525)
.....++.+++....+.-+..| =.+ .+..-+-|++.+..+ ++|++..+ +.++..+ .+-+++|++.--..+
T Consensus 117 ~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~---~~~DlkG-~lP~~vv~~~~~~~~ 192 (204)
T cd08904 117 IKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMF---VQPELRG-NLSRSVIEKTMPTNL 192 (204)
T ss_pred EEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEE---EEeCCCC-CCCHHHHHHHhHHHH
Confidence 2222344444444444444544 233 344556799999866 47888888 7776643 334666666544444
Q ss_pred HHHHHHH
Q 009787 488 KKEVELM 494 (525)
Q Consensus 488 ~~~~~~~ 494 (525)
.+.+..+
T Consensus 193 ~~f~~~~ 199 (204)
T cd08904 193 VNLILDA 199 (204)
T ss_pred HHHHHHH
Confidence 4444443
No 180
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=75.53 E-value=30 Score=31.53 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=55.4
Q ss_pred CCcEEEEEECCeEE-Eeeccc--CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCc------
Q 009787 35 SDPYAIITCGSEKR-FSSMVP--GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQT------ 105 (525)
Q Consensus 35 ~DPyv~v~~~~~~~-kT~~~~--~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~------ 105 (525)
..-|+++.++++.. +|+... ....-.|++.|.+.+..-+..|.++||.... ..+..|+.+.+++-.....
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~~ 115 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDNV 115 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccCC
Confidence 45688888877655 444332 2233456899999998888899999999887 5778999999998765222
Q ss_pred ccEEEEccC
Q 009787 106 GAVWYTLDS 114 (525)
Q Consensus 106 ~~~w~~L~~ 114 (525)
...|+.+.+
T Consensus 116 ~~~~~eFsS 124 (168)
T PF15625_consen 116 PLEEYEFSS 124 (168)
T ss_pred ceEeEEEcC
Confidence 445665543
No 181
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=74.03 E-value=68 Score=31.13 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=60.7
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCC-cceEeccceecCCCCCcEEEEEEE-eecCCCCCCcceeEeEEEEE
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKD-SNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHA 414 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~-~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~ 414 (525)
-.+.++++|++++|++|.+ .....++-..... .-|... ++ ..+.+..+ .|...|+-|+.-- .....
T Consensus 84 K~e~~vd~s~e~v~~lL~D--~~~r~~Wd~~~~e~~vIe~i-----d~---~~~vY~v~~~p~~~pvs~RDfV--~~~s~ 151 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSD--LRRRPEWDKHYRSCELVQQV-----DE---DDAIYHVTSPSLSGHGKPQDFV--ILASR 151 (240)
T ss_pred EEEEEEcCCHHHHHHHHhC--hhhhhhhHhhccEEEEEEec-----CC---CcEEEEEecCCCCCCCCCCeEE--EEEEE
Confidence 3467889999999999943 4433333322222 222211 11 12322222 2322344444422 22222
Q ss_pred -EecCCC-CeEEEEEeeeeCCCCCCC----eEEEEEEEEEEeeCCCceEEEEE
Q 009787 415 -VLSPDK-KIFVFETVQQAHDVPFGS----YFEIHGRWHLETIAENSSTIDIK 461 (525)
Q Consensus 415 -~~~~~~-~~~~v~~~~~~~~vPygd----~F~v~~r~~i~~~~~~~~~l~v~ 461 (525)
....++ .+++....+..|++|-.. -+...+.|+|.+.++++|+|...
T Consensus 152 ~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~ 204 (240)
T cd08913 152 RKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYY 204 (240)
T ss_pred EeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEE
Confidence 222333 344555566668888444 45688999999999999998443
No 182
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=73.95 E-value=14 Score=29.10 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=34.8
Q ss_pred ceeEEEeCCe--EEEEecCCCceeEEEEeecccee-cccccccc-CcEEEEEec
Q 009787 192 HGRMYVSAWH--ICFHSNAFSRQMKVIIPIGDIDE-RSQHAFIN-PAITIILRM 241 (525)
Q Consensus 192 ~Grlyis~~~--~~F~s~~~g~~~~~~i~~~~i~~-k~~~~~~~-~~i~i~~~~ 241 (525)
.|.||+++.+ +-|-.+--+-...+.|++.+|.. +..+..-+ --++|+.+.
T Consensus 13 ~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~ 66 (79)
T PF08567_consen 13 DGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKD 66 (79)
T ss_dssp EEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETT
T ss_pred CcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEec
Confidence 3999999999 99988654444479999999999 43332211 257777753
No 183
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=73.55 E-value=22 Score=33.62 Aligned_cols=122 Identities=10% Similarity=0.006 Sum_probs=66.8
Q ss_pred eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEE-eecCCCCCCcceeEeEEEEE
Q 009787 336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHA 414 (525)
Q Consensus 336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~ 414 (525)
.-++.++++|+..+..++.. .+.+.++...+..... + ...+.. ..+.|. ..+.-|++.+..-+. .+.+
T Consensus 48 ~k~e~~i~~~~~~~~~vl~d--~~~~~~W~p~~~~~~~-l------~~~~~~-~~v~y~~~~~PwPv~~RD~v~~-~~~~ 116 (215)
T cd08877 48 LRMEGEIDGPLFNLLALLNE--VELYKTWVPFCIRSKK-V------KQLGRA-DKVCYLRVDLPWPLSNREAVFR-GFGV 116 (215)
T ss_pred EEEEEEecCChhHeEEEEeh--hhhHhhhcccceeeEE-E------eecCCc-eEEEEEEEeCceEecceEEEEE-EEEE
Confidence 45678999999999887765 4444433322211111 0 111111 234454 333344666654433 3444
Q ss_pred Eec-CCCCeEEEEEeeee--CC--------CCCCC-----eEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeec
Q 009787 415 VLS-PDKKIFVFETVQQA--HD--------VPFGS-----YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKW 472 (525)
Q Consensus 415 ~~~-~~~~~~~v~~~~~~--~~--------vPygd-----~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~ 472 (525)
... .++ .++|...... .+ +|-.. --.....|.|++.++++|++... +.++-..+
T Consensus 117 ~~~~~~~-~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~---~~~DP~g~ 186 (215)
T cd08877 117 DRLEENG-QIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFV---ANVDPKMS 186 (215)
T ss_pred eeeccCC-CEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEE---EEcCCCcc
Confidence 433 344 4444443332 12 56554 24577889999999999999998 77765544
No 184
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=73.12 E-value=72 Score=29.87 Aligned_cols=123 Identities=7% Similarity=0.034 Sum_probs=59.3
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeec--CCCCCCcceeEeEEEEE
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLC--KSPIYPRDTAMTESQHA 414 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~--~~~~gpk~~~~~~~Q~~ 414 (525)
-++.+++++++++|.+++........++.. ++.....-. ..+..+.-+.|..|- ..++.++. ....+..
T Consensus 49 k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~-----~~~~~~~le--~id~~~~i~~~~~p~~~~~~vs~RD--fV~~~~~ 119 (206)
T cd08867 49 RAEGIVDALPEKVIDVIIPPCGGLRLKWDK-----SLKHYEVLE--KISEDLCVGRTITPSAAMGLISPRD--FVDLVYV 119 (206)
T ss_pred EEEEEEcCCHHHHHHHHHhcCccccccccc-----cccceEEEE--EeCCCeEEEEEEccccccCccCCcc--eEEEEEE
Confidence 567899999999999888622211111111 111111111 111122323333331 11233433 2223333
Q ss_pred EecCCCCeEEEEEeeeeCCCCCC-CeE---EEEEEEEEEeeC--CCceEEEEEEeeeeEEEee
Q 009787 415 VLSPDKKIFVFETVQQAHDVPFG-SYF---EIHGRWHLETIA--ENSSTIDIKVVSAGAHFKK 471 (525)
Q Consensus 415 ~~~~~~~~~~v~~~~~~~~vPyg-d~F---~v~~r~~i~~~~--~~~~~l~v~~~~~~V~f~K 471 (525)
....++.+++.-....-+..|-- ++- ...+.|.+++.. +++|.+... +.++..+
T Consensus 120 ~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~---~~~DpkG 179 (206)
T cd08867 120 KRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLY---VQTDLRG 179 (206)
T ss_pred EEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEE---EEeccCC
Confidence 33444434343344433566553 333 345678888764 467888888 7777755
No 185
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=69.24 E-value=73 Score=30.09 Aligned_cols=120 Identities=12% Similarity=0.142 Sum_probs=68.1
Q ss_pred eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEec
Q 009787 338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 417 (525)
Q Consensus 338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 417 (525)
...+++.++.++...+.. .|...|-.+..|..-+.....+-.+-|...-..|+-++. -|.........
T Consensus 56 ~~~ei~~~p~~VL~~vl~-----------~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~RD-~v~~R~w~~~~ 123 (205)
T cd08909 56 VSVEVEAPPSVVLNRVLR-----------ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSRD-FVVLRSWRTDL 123 (205)
T ss_pred EEEEeCCCHHHHHHHHHh-----------hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCCE-EEEEEEEEEeC
Confidence 356788888888776644 244444444444443222222333455433111332222 12211111223
Q ss_pred CCCCeEEEEEeeeeCCCCCCCeEE---EEEEEEEEeeCCCceEEEEEEeeeeEEEeec
Q 009787 418 PDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETIAENSSTIDIKVVSAGAHFKKW 472 (525)
Q Consensus 418 ~~~~~~~v~~~~~~~~vPygd~F~---v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~ 472 (525)
++|.++++.....-++.|.-+..+ ..++|.|++.++++|+|.-- +.|++.++
T Consensus 124 ~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i---~~vDpkG~ 178 (205)
T cd08909 124 PKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHI---CRVDLKGH 178 (205)
T ss_pred CCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEE---EEecCCCC
Confidence 456666666666666677655444 45889999999889999999 99998774
No 186
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=68.81 E-value=38 Score=31.86 Aligned_cols=53 Identities=8% Similarity=0.124 Sum_probs=43.5
Q ss_pred CCCCeEEEEEeeeeCCCCCCC---eEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecc
Q 009787 418 PDKKIFVFETVQQAHDVPFGS---YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWC 473 (525)
Q Consensus 418 ~~~~~~~v~~~~~~~~vPygd---~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~ 473 (525)
+.|.++++..+..-+..|.-. .-...++|.|++.++++|+|.-. ++|.+.+++
T Consensus 124 ~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~ltyi---~rvD~rG~~ 179 (205)
T cd08907 124 PRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRLTHI---CRADLRGRS 179 (205)
T ss_pred CCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEEEEE---EEeCCCCCC
Confidence 345688888888878887764 56678999999999999999999 999998743
No 187
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=67.12 E-value=49 Score=33.58 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=64.3
Q ss_pred cCCcceeEeeeeeeeecc--cccceeEEEeCCeEEEEecCCCceeEEEEeecccee---ccc-ccc-c-cCcEEEEEecC
Q 009787 171 LLPDEFVELSYSCVIERS--FLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE---RSQ-HAF-I-NPAITIILRMG 242 (525)
Q Consensus 171 lp~~E~l~~~~~c~l~~~--~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~---k~~-~~~-~-~~~i~i~~~~~ 242 (525)
+-+||.+++.+...=-.+ ---.|+|++|+-.+.++|...- ...+.|-+.-|.. |.. +.. + ..++.|.++.+
T Consensus 19 lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~ 97 (339)
T PF07289_consen 19 LRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLIWHSLKRP-RINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN 97 (339)
T ss_pred cccceEEEEeeeceeeccCCCCCeeEEEEEeeeeEEeccCCC-ceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC
Confidence 446777777665543221 1124999999999999997433 3566666666666 221 111 2 34888888743
Q ss_pred CCCCCCCCCCCCCCceeEEEeeeechH---HHHHHHHHHHHhhc
Q 009787 243 AGGHGVPPLGSPDGRVRYKFASFWNRN---HALRQLQRTAKNYH 283 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~f~sf~~rd---~~~~~l~~~~~~~~ 283 (525)
..+.+|.|+...... ..|..+..+|+.+.
T Consensus 98 ------------~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ 129 (339)
T PF07289_consen 98 ------------NTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYE 129 (339)
T ss_pred ------------CceEEEEeccCCCCCccchHHHHHHHHHHHHH
Confidence 356778888665332 45899999999875
No 188
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=65.17 E-value=24 Score=32.57 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=39.2
Q ss_pred EEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC------CceeEEEEEEccc
Q 009787 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK------STVLGSVIVTVES 101 (525)
Q Consensus 47 ~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~------dd~iG~~~i~l~~ 101 (525)
...|.+..++.+|.|+|++-+.++- ....|.|++++.+--.+ ...+|-+.++|-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4468888899999999999998764 24569999999542211 2356766666654
No 189
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.83 E-value=2.4 Score=46.44 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=61.9
Q ss_pred CCCCcEEEEEECCeEE-EeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCcccE
Q 009787 33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQTGAV 108 (525)
Q Consensus 33 g~~DPyv~v~~~~~~~-kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l---~~~~~~ 108 (525)
...+||+.+.+..... .+.+...+..|.|+++|.+++.. ...+.|.|+.......+.+...+++...++ ......
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~ 104 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL 104 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence 3568999998865443 55557788999999999999665 667888898876544444333333333333 234567
Q ss_pred EEEccCCCceEEEEEEEEe
Q 009787 109 WYTLDSPSGQVCLHIKTIK 127 (525)
Q Consensus 109 w~~L~~~~G~i~l~i~~~~ 127 (525)
|..+.+ .|.+...+.+..
T Consensus 105 w~~~~~-~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 105 WVLIEE-LGTLLKPAALTG 122 (694)
T ss_pred cccccc-ccceeeeecccC
Confidence 888765 577776666554
No 190
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=62.55 E-value=20 Score=32.94 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=37.6
Q ss_pred eecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC-----CCCceeEEEEEEccc
Q 009787 50 SSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-----WKSTVLGSVIVTVES 101 (525)
Q Consensus 50 T~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~-----~~dd~iG~~~i~l~~ 101 (525)
+.++....+|.|+++|.+.++. ....|.|++++...- .....+|-+.++|-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4445445899999999999853 355699999996532 234578888888776
No 191
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=62.07 E-value=1.2e+02 Score=28.10 Aligned_cols=39 Identities=10% Similarity=0.302 Sum_probs=31.2
Q ss_pred eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009787 46 EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD 84 (525)
Q Consensus 46 ~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d 84 (525)
....|.+..++.+|.|.|++-+.++- ....|.|++|+.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 34568888889999999999998753 3456999999965
No 192
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=56.45 E-value=41 Score=37.12 Aligned_cols=79 Identities=14% Similarity=0.281 Sum_probs=55.0
Q ss_pred eeeeeecccccceeEEEe----CCeEEEEecCC------------CceeEEEEeecccee-ccccc--------------
Q 009787 181 YSCVIERSFLYHGRMYVS----AWHICFHSNAF------------SRQMKVIIPIGDIDE-RSQHA-------------- 229 (525)
Q Consensus 181 ~~c~l~~~~~~~Grlyis----~~~~~F~s~~~------------g~~~~~~i~~~~i~~-k~~~~-------------- 229 (525)
|.|-|+.+ .|.+||+ .-.++|..... .....+.||+.||.+ |+..+
T Consensus 521 F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~g 597 (642)
T PF11696_consen 521 FPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWALG 597 (642)
T ss_pred eeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeecC
Confidence 77777764 3999997 55789987511 234568999999999 22111
Q ss_pred --cccCcEEEE-EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 009787 230 --FINPAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 277 (525)
Q Consensus 230 --~~~~~i~i~-~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~ 277 (525)
-+..++.|. ++ ..+.|.++....||+.|+.|-.
T Consensus 598 ~kEv~DGL~I~g~~---------------~g~~y~lTA~~~RDeLFNRLiA 633 (642)
T PF11696_consen 598 EKEVVDGLVIVGDE---------------PGQEYHLTAMPRRDELFNRLIA 633 (642)
T ss_pred CcccccceEEeccC---------------CCCEEEEEecchHHHHHHHHHh
Confidence 123466666 43 3478999999999999987754
No 193
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=53.23 E-value=1.4e+02 Score=25.38 Aligned_cols=95 Identities=12% Similarity=0.192 Sum_probs=60.4
Q ss_pred eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEec
Q 009787 338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 417 (525)
Q Consensus 338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 417 (525)
+..++++|+++||+.|-. ....++....|.. +.. ... .-++|...++.-. .+.+..+ ..
T Consensus 3 I~~~l~v~a~~ff~~l~~---s~~~DI~~~tgk~-~~~---------~~L-~G~~Y~K~~~~~~---~~~v~It----~~ 61 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLID---SLLYDIKQATGKK-LPV---------KQL-KGFSYQKKFKNKR---EAKVKIT----EY 61 (120)
T ss_pred EEEEecCCHHHHHHHHHH---HHHHHHHHHcCCC-CCh---------hhc-CCcEEEEEcCCCC---EEEEEEE----EE
Confidence 457899999999999964 4556666555442 111 112 3368887765311 3444433 23
Q ss_pred CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEE
Q 009787 418 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIK 461 (525)
Q Consensus 418 ~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~ 461 (525)
..+..|.+...+. ......+|.+...+.++|+|...
T Consensus 62 ~~~~~Y~~~~~s~--------~~~~~i~Y~i~~~~~~~~~v~y~ 97 (120)
T PF11687_consen 62 EPNKRYAATFSSS--------RGTFTISYEIEPLDDGSIEVTYE 97 (120)
T ss_pred cCCCEEEEEEEec--------CCCEEEEEEEEECCCCcEEEEEE
Confidence 3346888877764 22367899999999998888877
No 194
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=52.92 E-value=63 Score=23.58 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=26.0
Q ss_pred ceeEEEeCCeEEEEecCCCceeEEEEeecccee
Q 009787 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE 224 (525)
Q Consensus 192 ~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~ 224 (525)
-|++++|.-.+.+||..- ....+.||+-.|..
T Consensus 20 ~G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~ 51 (55)
T smart00683 20 LGVFFVTNLRLVWHSDTN-PRFNISVGYLQITN 51 (55)
T ss_pred eeEEEEEeeEEEEEeCCC-CceEEEEcceeEEE
Confidence 399999999999999764 35678888877765
No 195
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=51.97 E-value=1.3e+02 Score=25.71 Aligned_cols=59 Identities=8% Similarity=0.156 Sum_probs=35.9
Q ss_pred CeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHHHHHHHH
Q 009787 438 SYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 502 (525)
Q Consensus 438 d~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~~~~~~ 502 (525)
+-...+.+|.|.+.++++|+|... ..+.+..... +.+.....-..+.+..+++.+++.+
T Consensus 82 ~~~~~~g~w~~~~~~~~~t~Vt~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 82 PVASMSGEWRFEPLGGGGTRVTLR---HDFTLGIDSP---EAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred ChhhheeEEEEEECCCCcEEEEEE---EEEEECCCCc---hhHHHHHHHHccccHHHHHHHHHHh
Confidence 345678899999998778998888 7777765333 2222222333344455555555443
No 196
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=50.84 E-value=35 Score=38.85 Aligned_cols=80 Identities=11% Similarity=0.162 Sum_probs=63.2
Q ss_pred CCcEEEEEECCeEE-EeecccCC-CCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEE
Q 009787 35 SDPYAIITCGSEKR-FSSMVPGS-RYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWY 110 (525)
Q Consensus 35 ~DPyv~v~~~~~~~-kT~~~~~t-~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~ 110 (525)
+++|+.+.+..... +|....+. .+|.|.+.|.+........+.+.+-+.+..+....+|.+.++...+ +.....|+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~ 217 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWF 217 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcccccccee
Confidence 47888888765543 56666666 6899999998888777788999998888777677899999998887 46677898
Q ss_pred EccC
Q 009787 111 TLDS 114 (525)
Q Consensus 111 ~L~~ 114 (525)
++..
T Consensus 218 ~Il~ 221 (887)
T KOG1329|consen 218 PILD 221 (887)
T ss_pred eeec
Confidence 8754
No 197
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=49.29 E-value=15 Score=41.62 Aligned_cols=99 Identities=13% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEE
Q 009787 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD 82 (525)
Q Consensus 8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d 82 (525)
-+...-|.+++.+.+|..|.. ....||...++ ..+.+|.++.++..|.||++|++.+.+ .+.+.+..++
T Consensus 753 eSpl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~e 826 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTE 826 (1112)
T ss_pred cCcccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhhc
Confidence 445667889999999998853 45678887753 344579999999999999999998765 3445566666
Q ss_pred cCC----------CCCCceeEEEEEEcccCCCcccEEEEc
Q 009787 83 WDI----------IWKSTVLGSVIVTVESEGQTGAVWYTL 112 (525)
Q Consensus 83 ~d~----------~~~dd~iG~~~i~l~~l~~~~~~w~~L 112 (525)
++. ...+...|.+++.++.-......|+.-
T Consensus 827 k~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~d~d~~t~ 866 (1112)
T KOG4269|consen 827 KSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHHDADWYTQ 866 (1112)
T ss_pred ccchHHHhhhccchhhcccccccccccCccccccccCccC
Confidence 542 122334555555555443333445543
No 198
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=45.26 E-value=1.1e+02 Score=25.96 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=37.0
Q ss_pred cccccceeEEEeCCeEEEEecCCCceeEEEEeecccee-ccc----cccccCcEEEEEec
Q 009787 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQ----HAFINPAITIILRM 241 (525)
Q Consensus 187 ~~~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~----~~~~~~~i~i~~~~ 241 (525)
..+.-+|++.|-.+-+=||.+.-. +--+.|||++|+. .+. ...|+. ..|.|+.
T Consensus 19 ~g~~~yGkimiGDkaFEFyn~~n~-~dyIQIPW~eI~~V~a~V~fkgk~I~R-F~I~Tk~ 76 (118)
T PF06115_consen 19 LGLGKYGKIMIGDKAFEFYNDRNV-EDYIQIPWEEIDYVIASVSFKGKWIPR-FAIFTKK 76 (118)
T ss_pred ecccccCeEEEcccceEeecCCCh-hhcEEeChhheeEEEEEEEECCCEEee-EEEEECC
Confidence 345567999999999999875422 4456799999999 222 123444 8899963
No 199
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=44.88 E-value=3.1e+02 Score=27.98 Aligned_cols=107 Identities=10% Similarity=0.216 Sum_probs=69.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCC--eeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009787 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYP--MWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (525)
Q Consensus 15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP--~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~i 92 (525)
.|.|.|.+-.++. -....|+.++.+....+|..+.-+..- .-.+...+.+..-+..|++.+|-... .+..-|
T Consensus 59 ~LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vkk~hI 132 (508)
T PTZ00447 59 YLLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TKKVHI 132 (508)
T ss_pred eEEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cceeEE
Confidence 4667776655553 345678889889888887555333222 22344444555557779999998764 466789
Q ss_pred EEEEEEcccC----CCcccEEEEccCCCceEE--EEEEEEec
Q 009787 93 GSVIVTVESE----GQTGAVWYTLDSPSGQVC--LHIKTIKL 128 (525)
Q Consensus 93 G~~~i~l~~l----~~~~~~w~~L~~~~G~i~--l~i~~~~~ 128 (525)
|.+.+.+++- .-+...||-+.. .|+.. +.+.+.+.
T Consensus 133 gdI~InIn~dIIdk~FPKnkWy~c~k-DGq~~cRIqLSFhKL 173 (508)
T PTZ00447 133 GQIKIDINASVISKSFPKNEWFVCFK-DGQEICKVQMSFYKI 173 (508)
T ss_pred EEEEecccHHHHhccCCccceEEEec-CCceeeeEEEEehhh
Confidence 9999998854 456788999953 55543 44444433
No 200
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=44.37 E-value=1.9e+02 Score=24.19 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=54.3
Q ss_pred eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787 337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 416 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 416 (525)
-.+.+++++++++|.++-+ -.-+.++ ...+....|...+ +..+...+... |. .. ...+....
T Consensus 5 ~~~~~v~a~~e~V~~~l~d--~~~~~~w-----~~~~~~~~~~~~~---~~~~~~~~~~~-----g~--~~-~~~~i~~~ 66 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSD--PENWPRW-----WPGVKSVELLSGG---GPGTERTVRVA-----GR--GT-VREEITEY 66 (139)
T ss_dssp EEEEEESS-HHHHHHHHTT--TTGGGGT-----STTEEEEEEEEEC---STEEEEEEEEC-----SC--SE-EEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHhC--hhhhhhh-----hhceEEEEEcccc---ccceeEEEEec-----cc--cc-eeEEEEEe
Confidence 3467899999999999965 2222222 1123333344311 12221233321 32 11 22223333
Q ss_pred cCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEE
Q 009787 417 SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHF 469 (525)
Q Consensus 417 ~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f 469 (525)
.+++..+..... ..| -.....+|.+.+.+++ |++... ..+..
T Consensus 67 ~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~g-t~v~~~---~~~~~ 108 (139)
T PF10604_consen 67 DPEPRRITWRFV----PSG---FTNGTGRWRFEPVGDG-TRVTWT---VEFEP 108 (139)
T ss_dssp ETTTTEEEEEEE----SSS---SCEEEEEEEEEEETTT-EEEEEE---EEEEE
T ss_pred cCCCcEEEEEEE----ecc---eeEEEEEEEEEEcCCC-EEEEEE---EEEEE
Confidence 333556666553 222 2356889999999865 888887 66665
No 201
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.51 E-value=1.1e+02 Score=33.49 Aligned_cols=88 Identities=22% Similarity=0.332 Sum_probs=59.3
Q ss_pred cceeeecCCccee-EeeeeeeeecccccceeEEEeCCeEEEEecCCCceeEEEEeecccee--cccc-ccccC--cEEEE
Q 009787 165 LQTIFNLLPDEFV-ELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQH-AFINP--AITII 238 (525)
Q Consensus 165 f~~lF~lp~~E~l-~~~~~c~l~~~~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~--k~~~-~~~~~--~i~i~ 238 (525)
+...|.+-++|.+ -..|.|-+.. ...|.|+||+..|+|.+..-+..-.+.+||.-|.. |... ...-| +|+|+
T Consensus 30 ~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i~ 107 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEIT 107 (717)
T ss_pred ccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEEE
Confidence 4555654455544 4446676655 56799999999999999877766678899998888 3221 11323 78888
Q ss_pred EecCCCCCCCCCCCCCCCceeEEEeeeec
Q 009787 239 LRMGAGGHGVPPLGSPDGRVRYKFASFWN 267 (525)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~f~sf~~ 267 (525)
.++- .+..|-|..+..
T Consensus 108 CKDm-------------r~lR~~fk~~~q 123 (717)
T KOG4471|consen 108 CKDM-------------RNLRCAFKQEEQ 123 (717)
T ss_pred eccc-------------cceeeecCcccc
Confidence 8742 456666666653
No 202
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=40.94 E-value=4.1e+02 Score=27.13 Aligned_cols=98 Identities=24% Similarity=0.306 Sum_probs=67.5
Q ss_pred ecCCcceeEeeeeeeeecc--cccceeEEEeCCeEEEEecCCCceeEEEEeecccee-ccccccccCcEEEEEecCCCCC
Q 009787 170 NLLPDEFVELSYSCVIERS--FLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQHAFINPAITIILRMGAGGH 246 (525)
Q Consensus 170 ~lp~~E~l~~~~~c~l~~~--~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~~~~~~~~i~i~~~~~~~~~ 246 (525)
.|-++|.+...+.-.|.-+ .---|.+++|+-.+.+|++.- -.-.+.||+-.|.+ +....-+-.|+.|.|...+
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~n-e~fNVSiPylqi~~i~ir~SKfG~aLVieT~~~s--- 225 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMN-ESFNVSIPYLQIKSIRIRDSKFGPALVIETSESS--- 225 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCC-ccccccchHhhheeeeeeccccceEEEEEEeccC---
Confidence 4668888999898888542 111299999999999999753 24568899999999 4444344578899886432
Q ss_pred CCCCCCCCCCceeEEEeeeec-----hHHHHHHHHHHHHhhc
Q 009787 247 GVPPLGSPDGRVRYKFASFWN-----RNHALRQLQRTAKNYH 283 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~f~sf~~-----rd~~~~~l~~~~~~~~ 283 (525)
| .|+. .|-. -++.|+-|..||+.+.
T Consensus 226 ---------G--gYVL-GFRvDP~ErL~~l~KEi~sLh~vy~ 255 (339)
T PF07289_consen 226 ---------G--GYVL-GFRVDPEERLQELFKEIQSLHKVYS 255 (339)
T ss_pred ---------C--cEEE-EEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333 3332 2467778888888765
No 203
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=40.88 E-value=3.1e+02 Score=25.68 Aligned_cols=145 Identities=11% Similarity=0.114 Sum_probs=70.7
Q ss_pred eeee-ecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEec
Q 009787 339 NDVF-PCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 417 (525)
Q Consensus 339 ~~~~-~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 417 (525)
..+| ++|+++|++++.. ..+..++-.......+. ....+ ..++.+-+......|+-++..-.. .++...
T Consensus 50 ~~~~~d~s~~~~~~~~~D--~~~r~~Wd~~~~~~~~l----e~~~~--~~~~i~y~~~~~P~P~s~RD~V~~--r~~~~~ 119 (207)
T cd08911 50 YGSFDDVTARDFLNVQLD--LEYRKKWDATAVELEVV----DEDPE--TGSEIIYWEMQWPKPFANRDYVYV--RRYIID 119 (207)
T ss_pred EEEEcCCCHHHHHHHHhC--HHHHHHHHhhheeEEEE----EccCC--CCCEEEEEEEECCCCCCCccEEEE--EEEEEc
Confidence 3557 8999999999986 55544444333222221 11111 122333333333344555443222 333333
Q ss_pred CCCCeEEEEEeee-eCCCCCCC----eEEEEEEEEEEeeC---CCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHH
Q 009787 418 PDKKIFVFETVQQ-AHDVPFGS----YFEIHGRWHLETIA---ENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKK 489 (525)
Q Consensus 418 ~~~~~~~v~~~~~-~~~vPygd----~F~v~~r~~i~~~~---~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~ 489 (525)
.++..++|..... -+.+|-.. -....+.|+|++.. +++|++... +..+-. ..+=.+++..-+.....+
T Consensus 120 ~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~---~~~dPg-G~IP~~lvN~~~~~~~~~ 195 (207)
T cd08911 120 EENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLT---YFDNPG-VNIPSYITSWVAMSGMPD 195 (207)
T ss_pred CCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEE---EEeCCC-CccCHHHHHHHHHhhccH
Confidence 3333444444333 34777554 33467899999874 567887766 554322 222333343333444444
Q ss_pred HHHHHHHH
Q 009787 490 EVELMLET 497 (525)
Q Consensus 490 ~~~~~~~~ 497 (525)
.++.|-+.
T Consensus 196 ~l~~l~~a 203 (207)
T cd08911 196 FLERLRNA 203 (207)
T ss_pred HHHHHHHH
Confidence 44444433
No 204
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=37.59 E-value=2.5e+02 Score=23.56 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=31.2
Q ss_pred eEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHHHHHHHH
Q 009787 439 YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 502 (525)
Q Consensus 439 ~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~~~~~~ 502 (525)
-+....+|.|+..+.++|+|.+. . +|... +..++...........++..++.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~t~l~~~---~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 136 (138)
T cd08862 80 GISAVHRHEFEAKPDGGVRVTTS---E--SLSGP--LAFLFGLFVGKKLRALLPEWLEGLKAAA 136 (138)
T ss_pred CEEEEEEEEEEEcCCCcEEEEEE---E--Eeecc--hHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 36667899999887678888776 4 44442 1111222223334444555555555443
No 205
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=36.17 E-value=3.3e+02 Score=24.62 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=51.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----------Ce-EEEeecccC-----CCCCeeccEEEEEec--CC--CcE
Q 009787 16 IKLELLAAKNLIGANLNGTSDPYAIITCG----------SE-KRFSSMVPG-----SRYPMWGEEFNFSVD--EL--PVQ 75 (525)
Q Consensus 16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~----------~~-~~kT~~~~~-----t~nP~W~e~f~~~v~--~~--~~~ 75 (525)
+.=.|..|.+.. ..+.||...+. .. ...|.+... +-.-.|+..|++.+. .+ -.+
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 345677787653 34578887751 22 345555532 334678988888753 22 246
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEc
Q 009787 76 IIVTIYDWDIIWKSTVLGSVIVTV 99 (525)
Q Consensus 76 L~~~V~d~d~~~~dd~iG~~~i~l 99 (525)
|.|+||..|..+++...|-..+.+
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 999999999999988887766555
No 206
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=35.87 E-value=87 Score=26.24 Aligned_cols=63 Identities=8% Similarity=0.025 Sum_probs=31.6
Q ss_pred EEEEEEC-CeEEEeecccCCCCCeeccEEEEEecC--------CCcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009787 38 YAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (525)
Q Consensus 38 yv~v~~~-~~~~kT~~~~~t~nP~W~e~f~~~v~~--------~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l 102 (525)
||.+.+- -+.+.|.++. +.+|.+|-+-.+.|.- ....+.++++..-. .....+|.+++++.++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~l 73 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPL 73 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhh
Confidence 4555543 3445566655 8899999887777642 13458999998652 2356899999999987
No 207
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=35.11 E-value=2.7e+02 Score=23.29 Aligned_cols=135 Identities=9% Similarity=-0.001 Sum_probs=67.7
Q ss_pred eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEec
Q 009787 338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 417 (525)
Q Consensus 338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 417 (525)
...++++|++++|.++-. ..-+..+... .... ...|. . |+..+ +.+. . .++... ...-++...
T Consensus 4 ~s~~I~a~~~~Vw~~l~d--~~~~~~w~~~--~~~~-~~~~~---~-Gg~~~-~~~~-~----~~g~~~--~~~~~i~~~ 66 (139)
T cd07814 4 IEREFDAPPELVWRALTD--PELLAQWFGP--TTTA-EMDLR---V-GGRWF-FFMT-G----PDGEEG--WVSGEVLEV 66 (139)
T ss_pred EEEEecCCHHHHHHHcCC--HHHHHhhhCc--CCce-EEccc---C-CceEE-EEEE-C----CCCCEE--eccEEEEEE
Confidence 456889999999999854 3334444322 1111 11222 1 33322 1111 1 122221 222223322
Q ss_pred CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHHH
Q 009787 418 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET 497 (525)
Q Consensus 418 ~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~ 497 (525)
.....+.+......+ ..-+....+|.|...+ ++|+|.+. ... ...... .....+.....+...++.
T Consensus 67 ~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~-~~T~v~~~---~~~--~~~~~~----~~~~~~~~~~~~~~~l~~ 132 (139)
T cd07814 67 EPPRRLVFTWAFSDE----TPGPETTVTVTLEETG-GGTRLTLT---HSG--FPEEDA----EQEAREGMEEGWTGTLDR 132 (139)
T ss_pred cCCCeEEEEecccCC----CCCCceEEEEEEEECC-CCEEEEEE---EEc--cChHhH----HHHHHhCHhhHHHHHHHH
Confidence 233566665554322 2235678899999998 67888887 332 221110 223455566666666666
Q ss_pred HHHHHh
Q 009787 498 ARSYIK 503 (525)
Q Consensus 498 ~~~~~~ 503 (525)
++++++
T Consensus 133 lk~~~E 138 (139)
T cd07814 133 LKALLE 138 (139)
T ss_pred HHHHhh
Confidence 666554
No 208
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.65 E-value=3.3e+02 Score=22.72 Aligned_cols=27 Identities=4% Similarity=0.023 Sum_probs=19.1
Q ss_pred EEEEEEEEEeeCCCceEEEEEEeeeeEEEe
Q 009787 441 EIHGRWHLETIAENSSTIDIKVVSAGAHFK 470 (525)
Q Consensus 441 ~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~ 470 (525)
..+..|.|+..++++|+|... +.....
T Consensus 80 ~~~~~~~f~~~~~~~T~vt~~---~~~~~~ 106 (139)
T cd07817 80 PNAGSVRFRPAPGRGTRVTLT---IEYEPP 106 (139)
T ss_pred CcceEEEEEECCCCCeEEEEE---EEEECC
Confidence 456888888887778888887 554433
No 209
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=28.68 E-value=3.1e+02 Score=22.06 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=23.0
Q ss_pred EEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecc
Q 009787 440 FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWC 473 (525)
Q Consensus 440 F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~ 473 (525)
......|.++...+++|+|.+. ..+......
T Consensus 84 ~~~~~~~~~~~~~~~~t~v~~~---~~~~~~~~~ 114 (141)
T cd07812 84 VDGTGEWRLEPEGDGGTRVTYT---VEYDPPGPL 114 (141)
T ss_pred cceeEEEEEEECCCCcEEEEEE---EEEecCCcc
Confidence 4677888888887668988888 666665544
No 210
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.54 E-value=1.2e+02 Score=25.44 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=40.1
Q ss_pred ceeEEEeCCeEEEEecCCCceeEEEEeecccee-ccc-c-ccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeee
Q 009787 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQ-H-AFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFW 266 (525)
Q Consensus 192 ~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~-~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~ 266 (525)
.|++-|-..-+-||-+. ..+.-+.|||.+|.+ -.. + .-..+-..|+|. .+-+|.|+|=-
T Consensus 24 ~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td---------------~~gk~~FaSkd 85 (122)
T COG4687 24 YGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTD---------------TQGKVRFASKD 85 (122)
T ss_pred cCeEEEcccceeecCCC-ChhheeEecHHHhheeheeehhhhhcceEEEEEc---------------CCceEEEEeCC
Confidence 58888888888887654 335667899999998 221 1 123456677874 34588887754
No 211
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=26.93 E-value=4e+02 Score=22.77 Aligned_cols=58 Identities=9% Similarity=0.012 Sum_probs=35.3
Q ss_pred EEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHHHHHHHH
Q 009787 440 FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 502 (525)
Q Consensus 440 F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~~~~~~ 502 (525)
+.....|.++.. +++|+|.+. ..+....... -.++.........+.++..++.++..+
T Consensus 91 ~~~~~~~~~~~~-~~gT~v~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lk~~~ 148 (150)
T cd07818 91 ATNDVEFTLEPV-GGGTKVTWG---MSGELPFPLK-LMYLFLDMDKMIGKDFEKGLANLKAVL 148 (150)
T ss_pred ccceEEEEEEEc-CCceEEEEE---EEecCCchHH-HHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 477899999999 457999988 6555443221 123444444455555666666665544
No 212
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=25.38 E-value=4.4e+02 Score=22.67 Aligned_cols=138 Identities=7% Similarity=0.012 Sum_probs=67.6
Q ss_pred eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcce--EeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEE
Q 009787 336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNL--VMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQH 413 (525)
Q Consensus 336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i--~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~ 413 (525)
..++++|++|++.+|+++-. +..+..+....+ ..+ ...+|+. |+. +.|... .+-|. ... ..-.
T Consensus 2 l~i~r~~~ap~e~Vw~a~Td--pe~l~~W~~p~~-~~~~~~~~d~r~----GG~---~~~~~~--~~~g~-~~~--~~g~ 66 (142)
T cd07826 2 IVITREFDAPRELVFRAHTD--PELVKRWWGPRG-LTMTVCECDIRV----GGS---YRYVHR--APDGE-EMG--FHGV 66 (142)
T ss_pred EEEEEEECCCHHHHHHHhCC--HHHHhhccCCCC-CcceEEEEeccC----CCE---EEEEEE--CCCCC-Eec--ceEE
Confidence 36789999999999999975 555555433222 111 1223332 333 233322 11111 111 1112
Q ss_pred EEecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHH
Q 009787 414 AVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVEL 493 (525)
Q Consensus 414 ~~~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~ 493 (525)
|......+.++..... .+.| . -.....|.|+..+ ++|+|.+. .. |... ...+.....++..-+..
T Consensus 67 ~~ei~p~~~l~~t~~~--~~~~-~--~~s~v~~~l~~~~-~gT~l~l~---~~--~~~~----~~~~~~~~~~~~~Gw~~ 131 (142)
T cd07826 67 YHEVTPPERIVQTEEF--EGLP-D--GVALETVTFTELG-GRTRLTAT---SR--YPSK----EARDGVLASGMEEGMEE 131 (142)
T ss_pred EEEEcCCCEEEEEeEe--cCCC-C--CceEEEEEEEECC-CCEEEEEE---EE--eCCH----HHHHHHHHhhHHHHHHH
Confidence 3222233466665443 2333 2 2245577788765 67998887 33 2211 00111234455666666
Q ss_pred HHHHHHHHHh
Q 009787 494 MLETARSYIK 503 (525)
Q Consensus 494 ~~~~~~~~~~ 503 (525)
.++.+.++++
T Consensus 132 ~l~~L~~~l~ 141 (142)
T cd07826 132 SYDRLDELLA 141 (142)
T ss_pred HHHHHHHHHh
Confidence 6766666654
No 213
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=24.74 E-value=74 Score=28.18 Aligned_cols=27 Identities=19% Similarity=0.561 Sum_probs=22.5
Q ss_pred EEEEEEEEEeeCCCceEEEEEEeeeeEEEe
Q 009787 441 EIHGRWHLETIAENSSTIDIKVVSAGAHFK 470 (525)
Q Consensus 441 ~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~ 470 (525)
+...+|.|++.+++.|+|... ..-+|.
T Consensus 86 ~L~~~W~F~pl~~~~ckV~f~---ldfeF~ 112 (146)
T COG2867 86 YLKGGWQFTPLSEDACKVEFF---LDFEFK 112 (146)
T ss_pred hhcCceEEEECCCCceEEEEE---EEeeeh
Confidence 688999999999999998888 666553
No 214
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.04 E-value=4.4e+02 Score=22.26 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.1
Q ss_pred eeeeeeecCHHHHHHHHcC
Q 009787 337 IYNDVFPCTAEQFFTLLFS 355 (525)
Q Consensus 337 ~~~~~~~~s~~~~f~~lf~ 355 (525)
-.+.++++|++.+|.++-+
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d 21 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLAD 21 (144)
T ss_pred EEEEEEeCCHHHHHHHHhC
Confidence 3567899999999999965
No 215
>PRK10724 hypothetical protein; Provisional
Probab=23.53 E-value=1e+02 Score=27.69 Aligned_cols=107 Identities=14% Similarity=0.257 Sum_probs=55.2
Q ss_pred eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787 336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV 415 (525)
Q Consensus 336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~ 415 (525)
.-...+++.|++++|.++-+ -.-+.+|.-.+....+. ...++ . +....+.- +++- .-.-+.+..
T Consensus 17 i~~~~~v~~s~~~v~~lv~D--ve~yp~flp~~~~s~vl----~~~~~--~--~~a~l~v~----~~g~--~~~f~srv~ 80 (158)
T PRK10724 17 ISRTALVPYSAEQMYQLVND--VQSYPQFLPGCTGSRVL----ESTPG--Q--MTAAVDVS----KAGI--SKTFTTRNQ 80 (158)
T ss_pred EEEEEEecCCHHHHHHHHHH--HHHHHHhCcccCeEEEE----EecCC--E--EEEEEEEe----eCCc--cEEEEEEEE
Confidence 34467999999999999954 33344444333332221 11111 1 11222221 1221 111122233
Q ss_pred ecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEE
Q 009787 416 LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHF 469 (525)
Q Consensus 416 ~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f 469 (525)
..++ +.+.++.. . |.-=..++.|.|.+.++++|+|... ..++|
T Consensus 81 ~~~~-~~I~~~~~---~----GpF~~l~g~W~f~p~~~~~t~V~~~---l~fef 123 (158)
T PRK10724 81 LTSN-QSILMQLV---D----GPFKKLIGGWKFTPLSQEACRIEFH---LDFEF 123 (158)
T ss_pred ecCC-CEEEEEec---C----CChhhccceEEEEECCCCCEEEEEE---EEEEE
Confidence 3333 34444211 2 3333578999999998888998888 77665
No 216
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.31 E-value=5e+02 Score=22.21 Aligned_cols=141 Identities=7% Similarity=0.038 Sum_probs=67.8
Q ss_pred eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787 336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV 415 (525)
Q Consensus 336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~ 415 (525)
..+++.|++|++.+|+++-. +..+.++.---.........+...+ |+..+ |..- . .++. .....-.+.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~td--p~~l~~W~~~~~~~~~~~~~~d~~~--Gg~~~---~~~~--~-~~g~--~~~~~g~~~ 69 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSD--PAARARWFVPSPDWTVLEDEFDFRV--GGREV---SRGG--P-KGGP--EITVEARYH 69 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcC--HHHHHhcCCCCCCCceeeeEEecCC--CCEEE---EEEE--C-CCCC--EEeeeEEEE
Confidence 46789999999999999964 5545544321011111111122211 33222 2211 1 1221 112222333
Q ss_pred ecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHH
Q 009787 416 LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELML 495 (525)
Q Consensus 416 ~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~ 495 (525)
.....+.++........+-|-+. ....+.|+..+ +.|+|.+. -...+.... ...+++..-+...+
T Consensus 70 ~~~p~~~l~~t~~~~~~~~~~~~---s~v~~~l~~~~-~gT~l~~~---~~~~~~~~~--------~~~~~~~~GW~~~l 134 (143)
T cd08900 70 DIVPDERIVYTYTMHIGGTLLSA---SLATVEFAPEG-GGTRLTLT---EQGAFLDGD--------DDPAGREQGTAALL 134 (143)
T ss_pred EecCCceEEEEEeeccCCccccc---eEEEEEEEECC-CCEEEEEE---EEEeccccc--------chhhhHHHHHHHHH
Confidence 22333566666544434444222 34677787765 67999886 332221110 12345556666666
Q ss_pred HHHHHHHh
Q 009787 496 ETARSYIK 503 (525)
Q Consensus 496 ~~~~~~~~ 503 (525)
+.+++++.
T Consensus 135 ~~L~~~l~ 142 (143)
T cd08900 135 DNLAAELE 142 (143)
T ss_pred HHHHHHHh
Confidence 66666654
No 217
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.26 E-value=4.7e+02 Score=21.55 Aligned_cols=56 Identities=9% Similarity=0.188 Sum_probs=30.9
Q ss_pred EEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHHHHHHHH
Q 009787 440 FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 502 (525)
Q Consensus 440 F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~~~~~~ 502 (525)
|.....|.+...+. .|+|... ..+.... +. ..+..-.....++.++.+++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~-~t~v~~~---~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 83 FPYEDTYTFEPVGG-GTRVRYT---AELEPGG--FA-RLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred cceEEEEEEEEcCC-ceEEEEE---EEEccch--hH-HHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 44578899998765 6888888 6655421 11 12222223344445555555555543
No 218
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.73 E-value=4.9e+02 Score=21.53 Aligned_cols=137 Identities=10% Similarity=0.050 Sum_probs=64.4
Q ss_pred eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEec
Q 009787 338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 417 (525)
Q Consensus 338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 417 (525)
...++++|++++|.++-+-. . +..++.. +....+.. .. .+... .|..... -|+.. .....+...
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~-~-~~~w~~~-----~~~~~~~~-~~-~G~~~--~~~~~~~--~~~~~---~~~~~v~~~ 67 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFP-S-YPEWNPF-----VRSATGLS-LA-LGARL--RFVVKLP--GGPPR---SFKPRVTEV 67 (141)
T ss_pred EEEEecCCHHHHHHHHhccc-c-ccccChh-----heeEeccc-cC-CCCEE--EEEEeCC--CCCcE---EEEEEEEEE
Confidence 45789999999999996522 1 2222211 11111110 11 12222 3332211 12221 222233333
Q ss_pred CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHHH
Q 009787 418 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET 497 (525)
Q Consensus 418 ~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~ 497 (525)
.....+....... -+. -+.....|.++..++++|++... . .|.. +............+.+.++.+++.
T Consensus 68 ~p~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~T~~~~~---~--~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 135 (141)
T cd07822 68 EPPRRLAWRGGLP---FPG--LLDGEHSFELEPLGDGGTRFVHR---E--TFSG--LLAPLVLLGLGRDLRAGFEAMNEA 135 (141)
T ss_pred cCCCEeEEEecCC---CCc--EeeEEEEEEEEEcCCCcEEEEEe---e--EEEE--EEhHHhhhhhHHHHhHhHHHHHHH
Confidence 3345665554321 111 14677889999987788997665 3 3332 222222222333555556666666
Q ss_pred HHHHH
Q 009787 498 ARSYI 502 (525)
Q Consensus 498 ~~~~~ 502 (525)
++..+
T Consensus 136 L~~~~ 140 (141)
T cd07822 136 LKARA 140 (141)
T ss_pred HHHhh
Confidence 65543
No 219
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=20.04 E-value=1.4e+02 Score=23.40 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=20.7
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEE
Q 009787 73 PVQIIVTIYDWDIIWKSTVLGSVIV 97 (525)
Q Consensus 73 ~~~L~~~V~d~d~~~~dd~iG~~~i 97 (525)
....+|++|+.|.+..|++|+.+..
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~T 35 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKT 35 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEE
Confidence 4557899999998788999998765
Done!