Query 009788
Match_columns 525
No_of_seqs 219 out of 938
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:01:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cuj_A Transcriptional adaptor 99.9 9.3E-27 3.2E-31 202.3 12.3 85 441-525 23-107 (108)
2 2aqe_A Transcriptional adaptor 99.9 2E-26 6.8E-31 194.6 10.0 83 443-525 7-89 (90)
3 2elj_A Transcriptional adapter 99.9 6.3E-26 2.2E-30 190.8 10.1 81 443-523 6-88 (88)
4 2elk_A SPCC24B10.08C protein; 99.6 3.4E-15 1.2E-19 115.9 7.6 56 97-152 2-58 (58)
5 2yus_A SWI/SNF-related matrix- 99.4 2.4E-13 8E-18 112.0 8.4 55 102-157 16-70 (79)
6 1x41_A Transcriptional adaptor 99.4 2.8E-13 9.6E-18 105.7 7.3 56 99-154 3-58 (60)
7 2e5r_A Dystrobrevin alpha; ZZ 99.4 6.2E-13 2.1E-17 104.8 6.0 58 38-96 3-61 (63)
8 2fc7_A ZZZ3 protein; structure 99.1 5.4E-11 1.8E-15 98.5 6.3 63 38-101 12-79 (82)
9 1guu_A C-MYB, MYB proto-oncoge 99.1 1.4E-10 4.7E-15 87.6 5.8 46 104-149 3-48 (52)
10 1gvd_A MYB proto-oncogene prot 99.1 1.6E-10 5.3E-15 87.3 5.7 46 104-149 3-48 (52)
11 1w0t_A Telomeric repeat bindin 99.0 3.2E-10 1.1E-14 86.0 6.2 46 104-149 2-49 (53)
12 2d9a_A B-MYB, MYB-related prot 99.0 4.1E-10 1.4E-14 87.5 6.9 48 102-149 6-53 (60)
13 2yum_A ZZZ3 protein, zinc fing 99.0 3.8E-10 1.3E-14 91.7 6.2 52 102-153 6-62 (75)
14 2dip_A Zinc finger SWIM domain 99.0 3.8E-10 1.3E-14 96.4 5.6 56 46-112 31-87 (98)
15 2dim_A Cell division cycle 5-l 99.0 1.1E-09 3.6E-14 87.8 7.2 48 102-149 7-54 (70)
16 2cu7_A KIAA1915 protein; nucle 98.9 1.6E-09 5.3E-14 87.4 7.1 50 101-151 6-55 (72)
17 3sjm_A Telomeric repeat-bindin 98.9 1.4E-09 4.7E-14 85.9 6.2 46 104-149 11-58 (64)
18 1ity_A TRF1; helix-turn-helix, 98.9 1.5E-09 5.3E-14 86.7 6.1 48 103-150 9-58 (69)
19 2cjj_A Radialis; plant develop 98.8 2.2E-09 7.5E-14 90.8 4.7 59 104-162 8-74 (93)
20 2cqr_A RSGI RUH-043, DNAJ homo 98.8 2.2E-09 7.6E-14 86.9 4.0 51 102-153 16-69 (73)
21 1tot_A CREB-binding protein; z 98.8 2E-09 6.8E-14 81.5 3.4 46 43-96 3-48 (52)
22 1wgx_A KIAA1903 protein; MYB D 98.8 6.3E-09 2.2E-13 83.9 5.3 46 104-149 8-56 (73)
23 2din_A Cell division cycle 5-l 98.7 2.4E-08 8.3E-13 78.9 6.2 47 101-149 6-52 (66)
24 2ltp_A Nuclear receptor corepr 98.1 2.1E-09 7.1E-14 90.3 0.0 50 99-149 11-60 (89)
25 2k9n_A MYB24; R2R3 domain, DNA 98.6 2.7E-08 9.3E-13 86.0 6.1 46 105-150 2-47 (107)
26 2ckx_A NGTRF1, telomere bindin 98.6 3E-08 1E-12 82.2 6.0 46 105-150 1-50 (83)
27 1gv2_A C-MYB, MYB proto-oncoge 98.6 2.8E-08 9.5E-13 85.5 5.7 48 103-150 3-50 (105)
28 3zqc_A MYB3; transcription-DNA 98.6 3.6E-08 1.2E-12 88.3 4.7 47 104-150 2-48 (131)
29 1h8a_C AMV V-MYB, MYB transfor 98.5 9.6E-08 3.3E-12 85.1 6.8 49 102-150 25-73 (128)
30 2llk_A Cyclin-D-binding MYB-li 98.5 1.3E-07 4.3E-12 76.5 6.4 47 100-148 19-65 (73)
31 2eqr_A N-COR1, N-COR, nuclear 98.5 1.4E-07 4.6E-12 73.6 5.9 44 104-148 12-55 (61)
32 3osg_A MYB21; transcription-DN 98.5 1.9E-07 6.5E-12 83.0 6.4 48 102-150 9-56 (126)
33 2k9n_A MYB24; R2R3 domain, DNA 98.4 3.4E-07 1.2E-11 79.0 7.0 47 102-149 51-97 (107)
34 1gv2_A C-MYB, MYB proto-oncoge 98.4 2.8E-07 9.6E-12 79.2 6.1 47 102-149 54-100 (105)
35 2iw5_B Protein corest, REST co 98.4 5.2E-07 1.8E-11 87.0 7.0 50 100-150 129-178 (235)
36 3osg_A MYB21; transcription-DN 98.4 4.3E-07 1.5E-11 80.7 6.0 47 102-149 60-106 (126)
37 2roh_A RTBP1, telomere binding 98.3 5.1E-07 1.7E-11 79.8 6.3 48 103-150 30-81 (122)
38 2aje_A Telomere repeat-binding 98.3 4.2E-07 1.4E-11 78.4 5.1 50 103-152 12-65 (105)
39 3zqc_A MYB3; transcription-DNA 98.3 5.7E-07 2E-11 80.4 5.8 48 102-150 52-99 (131)
40 1h8a_C AMV V-MYB, MYB transfor 98.3 8.7E-07 3E-11 78.8 6.3 47 102-149 77-123 (128)
41 2cqq_A RSGI RUH-037, DNAJ homo 98.3 1.8E-06 6.3E-11 69.5 7.4 45 104-149 8-55 (72)
42 2juh_A Telomere binding protei 98.3 6.6E-07 2.2E-11 79.0 5.0 49 102-150 15-67 (121)
43 1h89_C C-MYB, MYB proto-oncoge 98.2 1.1E-06 3.9E-11 80.9 6.5 48 102-149 56-103 (159)
44 1h89_C C-MYB, MYB proto-oncoge 98.0 6.3E-06 2.1E-10 75.9 6.0 47 102-149 108-154 (159)
45 2yqk_A Arginine-glutamic acid 98.0 1.3E-05 4.3E-10 62.9 6.8 46 102-148 7-53 (63)
46 2xag_B REST corepressor 1; ami 97.9 1E-05 3.4E-10 86.5 6.6 47 103-150 379-425 (482)
47 4eef_G F-HB80.4, designed hema 97.9 2.2E-06 7.4E-11 68.7 1.0 44 104-147 20-66 (74)
48 2crg_A Metastasis associated p 97.7 3.4E-05 1.2E-09 61.7 5.5 44 104-148 8-52 (70)
49 1x58_A Hypothetical protein 49 97.7 4E-05 1.4E-09 59.6 5.5 46 103-149 7-55 (62)
50 4a69_C Nuclear receptor corepr 97.6 6.3E-05 2.2E-09 63.6 5.4 44 104-148 43-86 (94)
51 1ign_A Protein (RAP1); RAP1,ye 97.5 5.6E-05 1.9E-09 73.6 4.2 48 103-150 7-59 (246)
52 3hm5_A DNA methyltransferase 1 96.2 0.0068 2.3E-07 50.9 5.7 45 104-149 30-79 (93)
53 1ug2_A 2610100B20RIK gene prod 96.0 0.0094 3.2E-07 49.5 5.7 45 105-149 34-80 (95)
54 1fex_A TRF2-interacting telome 96.0 0.0049 1.7E-07 47.4 3.8 46 104-149 2-56 (59)
55 2fq3_A Transcription regulator 95.8 0.026 9E-07 48.3 7.8 69 456-524 22-98 (104)
56 2xb0_X Chromo domain-containin 95.8 0.0063 2.2E-07 60.6 4.5 32 101-132 165-196 (270)
57 4b4c_A Chromodomain-helicase-D 95.4 0.013 4.3E-07 55.9 4.7 31 103-133 133-163 (211)
58 1ofc_X ISWI protein; nuclear p 95.4 0.012 4.2E-07 59.4 4.8 48 105-153 111-158 (304)
59 2ebi_A DNA binding protein GT- 94.6 0.018 6.2E-07 47.2 2.9 45 105-149 5-62 (86)
60 2dce_A KIAA1915 protein; swirm 94.3 0.053 1.8E-06 46.9 5.4 70 455-524 23-101 (111)
61 2lr8_A CAsp8-associated protei 93.1 0.0096 3.3E-07 46.9 0.0 44 105-149 15-60 (70)
62 4iej_A DNA methyltransferase 1 94.0 0.086 3E-06 44.1 5.7 45 104-149 30-79 (93)
63 1irz_A ARR10-B; helix-turn-hel 93.9 0.093 3.2E-06 41.0 5.5 48 104-151 7-58 (64)
64 2xag_B REST corepressor 1; ami 92.6 0.022 7.4E-07 60.9 0.0 45 103-148 188-232 (482)
65 3ny3_A E3 ubiquitin-protein li 89.8 0.22 7.4E-06 40.1 3.2 42 51-97 6-51 (75)
66 1ofc_X ISWI protein; nuclear p 89.5 0.27 9.2E-06 49.7 4.4 46 104-149 212-272 (304)
67 2y9y_A Imitation switch protei 89.1 0.31 1.1E-05 50.5 4.6 60 105-166 124-184 (374)
68 3nis_A E3 ubiquitin-protein li 88.7 0.34 1.2E-05 39.6 3.7 41 51-96 10-54 (82)
69 1v5n_A PDI-like hypothetical p 87.1 0.32 1.1E-05 40.2 2.6 32 46-79 47-78 (89)
70 4b4c_A Chromodomain-helicase-D 87.0 0.55 1.9E-05 44.4 4.6 43 105-147 8-54 (211)
71 2y9y_A Imitation switch protei 75.7 2.8 9.7E-05 43.3 5.2 45 104-148 228-287 (374)
72 2d8v_A Zinc finger FYVE domain 75.2 2 7E-05 33.5 3.0 33 45-81 7-39 (67)
73 1weo_A Cellulose synthase, cat 74.1 2.4 8.1E-05 35.1 3.3 32 47-79 17-52 (93)
74 1z60_A TFIIH basal transcripti 61.7 3.6 0.00012 31.4 1.9 31 47-78 16-46 (59)
75 4fx0_A Probable transcriptiona 53.8 15 0.00053 32.0 5.0 58 467-524 26-83 (148)
76 2bv6_A MGRA, HTH-type transcri 52.7 20 0.00068 30.3 5.5 56 464-524 27-82 (142)
77 3kp7_A Transcriptional regulat 51.4 23 0.00078 30.3 5.7 57 462-524 26-82 (151)
78 2fa5_A Transcriptional regulat 49.6 34 0.0012 29.4 6.6 57 463-524 38-94 (162)
79 2htj_A P fimbrial regulatory p 49.4 15 0.00051 28.7 3.8 43 482-524 3-45 (81)
80 2d1h_A ST1889, 109AA long hypo 49.4 35 0.0012 27.0 6.2 58 463-524 10-67 (109)
81 3g3z_A NMB1585, transcriptiona 48.5 25 0.00086 29.8 5.5 56 464-524 21-76 (145)
82 3k0l_A Repressor protein; heli 47.9 37 0.0013 29.5 6.6 60 460-524 32-91 (162)
83 2fbi_A Probable transcriptiona 45.9 28 0.00096 29.1 5.3 55 465-524 27-81 (142)
84 3ech_A MEXR, multidrug resista 45.8 39 0.0013 28.5 6.3 56 464-524 25-82 (142)
85 1ign_A Protein (RAP1); RAP1,ye 45.5 29 0.00098 33.8 5.7 25 126-150 173-197 (246)
86 2frh_A SARA, staphylococcal ac 44.4 29 0.001 29.2 5.2 58 464-524 27-84 (127)
87 1lj9_A Transcriptional regulat 43.5 27 0.00093 29.4 4.8 56 464-524 19-74 (144)
88 1sfx_A Conserved hypothetical 43.3 42 0.0014 26.5 5.8 55 465-524 11-65 (109)
89 3bro_A Transcriptional regulat 43.2 44 0.0015 27.9 6.1 57 464-524 24-81 (141)
90 2ve8_A FTSK, DNA translocase F 42.7 36 0.0012 27.0 4.9 45 477-525 12-56 (73)
91 4hbl_A Transcriptional regulat 42.1 34 0.0012 29.3 5.3 56 464-524 31-86 (149)
92 2cs3_A Protein C14ORF4, MY039 41.8 25 0.00085 28.5 3.8 36 44-79 13-48 (93)
93 3bpv_A Transcriptional regulat 41.7 35 0.0012 28.4 5.2 55 465-524 20-74 (138)
94 1bja_A Transcription regulator 41.5 30 0.001 28.7 4.5 53 466-523 8-61 (95)
95 3jw4_A Transcriptional regulat 41.1 40 0.0014 28.6 5.6 64 458-524 25-88 (148)
96 3bja_A Transcriptional regulat 40.5 36 0.0012 28.3 5.1 53 467-524 26-78 (139)
97 3boq_A Transcriptional regulat 40.4 40 0.0014 28.9 5.5 58 463-524 36-93 (160)
98 2fbh_A Transcriptional regulat 39.9 40 0.0014 28.3 5.3 57 464-524 27-83 (146)
99 3bj6_A Transcriptional regulat 39.8 47 0.0016 28.1 5.9 56 464-524 30-85 (152)
100 3fm5_A Transcriptional regulat 39.6 40 0.0014 28.7 5.4 60 461-524 26-85 (150)
101 2qww_A Transcriptional regulat 39.1 49 0.0017 28.1 5.9 56 464-524 31-86 (154)
102 3oop_A LIN2960 protein; protei 38.7 33 0.0011 29.0 4.6 53 467-524 30-82 (143)
103 3s2w_A Transcriptional regulat 38.4 38 0.0013 29.2 5.1 59 461-524 37-95 (159)
104 2x4h_A Hypothetical protein SS 38.4 49 0.0017 27.9 5.7 54 470-524 9-62 (139)
105 2dk5_A DNA-directed RNA polyme 38.2 43 0.0015 27.3 5.0 51 471-524 17-67 (91)
106 1wg2_A Zinc finger (AN1-like) 37.4 73 0.0025 24.6 5.7 50 40-96 9-58 (64)
107 2k02_A Ferrous iron transport 37.0 40 0.0014 27.5 4.5 39 486-524 8-47 (87)
108 1twf_L ABC10-alpha, DNA-direct 37.0 8.6 0.00029 30.3 0.5 33 36-68 18-52 (70)
109 3hsr_A HTH-type transcriptiona 36.9 27 0.00092 29.6 3.7 56 464-524 26-81 (140)
110 2gxg_A 146AA long hypothetical 36.7 53 0.0018 27.5 5.6 56 463-524 26-81 (146)
111 3e6m_A MARR family transcripti 36.3 41 0.0014 29.2 4.9 61 459-524 38-98 (161)
112 2pex_A Transcriptional regulat 35.8 38 0.0013 28.9 4.6 57 463-524 36-92 (153)
113 3cdh_A Transcriptional regulat 35.7 57 0.002 27.8 5.8 56 464-524 33-88 (155)
114 2rdp_A Putative transcriptiona 35.6 42 0.0014 28.4 4.8 56 464-524 32-87 (150)
115 3cjn_A Transcriptional regulat 35.2 51 0.0018 28.3 5.4 56 464-524 42-97 (162)
116 2zc2_A DNAD-like replication p 35.0 15 0.0005 28.8 1.6 18 368-385 60-77 (78)
117 3e7l_A Transcriptional regulat 34.3 33 0.0011 25.6 3.4 26 110-136 19-44 (63)
118 1xn7_A Hypothetical protein YH 34.3 43 0.0015 26.5 4.2 37 487-523 9-46 (78)
119 3nrv_A Putative transcriptiona 33.8 59 0.002 27.4 5.5 51 469-524 35-85 (148)
120 1wfl_A Zinc finger protein 216 33.8 85 0.0029 24.9 5.7 47 43-96 22-68 (74)
121 1wfh_A Zinc finger (AN1-like) 33.7 64 0.0022 24.9 4.9 47 43-96 12-58 (64)
122 2a61_A Transcriptional regulat 33.4 47 0.0016 27.8 4.7 54 466-524 25-78 (145)
123 1tbx_A ORF F-93, hypothetical 33.1 47 0.0016 26.4 4.5 51 469-524 3-57 (99)
124 2li6_A SWI/SNF chromatin-remod 32.5 42 0.0014 28.5 4.2 38 113-150 52-96 (116)
125 1jgs_A Multiple antibiotic res 32.2 52 0.0018 27.3 4.8 55 465-524 25-79 (138)
126 4b8x_A SCO5413, possible MARR- 31.9 37 0.0013 29.3 3.9 56 466-524 27-82 (147)
127 2vn2_A DNAD, chromosome replic 31.6 84 0.0029 26.8 6.1 57 467-524 25-82 (128)
128 1s3j_A YUSO protein; structura 31.4 55 0.0019 27.8 4.9 56 464-524 27-82 (155)
129 3u2r_A Regulatory protein MARR 31.0 65 0.0022 28.0 5.4 62 459-524 31-93 (168)
130 1z91_A Organic hydroperoxide r 30.7 36 0.0012 28.7 3.5 55 465-524 31-85 (147)
131 1ku9_A Hypothetical protein MJ 30.6 86 0.003 26.1 6.0 57 464-524 16-72 (152)
132 3eco_A MEPR; mutlidrug efflux 30.4 72 0.0025 26.5 5.4 57 464-524 21-78 (139)
133 3bdd_A Regulatory protein MARR 30.0 87 0.003 25.9 5.9 51 469-524 26-76 (142)
134 3r0a_A Putative transcriptiona 29.8 95 0.0032 26.1 6.0 58 463-524 15-73 (123)
135 2xvc_A ESCRT-III, SSO0910; cel 29.3 61 0.0021 24.5 4.0 41 484-524 15-56 (59)
136 3f3x_A Transcriptional regulat 29.0 88 0.003 26.2 5.8 54 465-524 27-81 (144)
137 2eth_A Transcriptional regulat 28.8 52 0.0018 28.2 4.3 53 467-524 37-89 (154)
138 3dpt_A ROCO, RAB family protei 28.4 55 0.0019 33.0 4.9 54 470-523 11-68 (332)
139 2k4b_A Transcriptional regulat 27.5 41 0.0014 27.8 3.1 51 469-524 30-84 (99)
140 1p4x_A Staphylococcal accessor 27.3 58 0.002 31.3 4.7 57 464-524 24-81 (250)
141 4aik_A Transcriptional regulat 27.1 97 0.0033 26.8 5.8 53 468-524 25-77 (151)
142 2i5u_A DNAD domain protein; st 26.2 25 0.00086 28.0 1.5 18 368-385 65-82 (83)
143 1vz0_A PARB, chromosome partit 26.1 1.4E+02 0.0049 28.1 7.2 59 464-522 138-201 (230)
144 2obp_A Putative DNA-binding pr 25.8 84 0.0029 26.0 4.7 55 470-524 12-67 (96)
145 2nnn_A Probable transcriptiona 25.7 79 0.0027 26.1 4.8 49 471-524 35-83 (140)
146 3tgn_A ADC operon repressor AD 25.7 81 0.0028 26.4 4.9 49 470-524 34-82 (146)
147 3deu_A Transcriptional regulat 25.7 69 0.0024 28.0 4.6 59 462-524 41-99 (166)
148 2pjp_A Selenocysteine-specific 25.5 53 0.0018 27.7 3.6 52 472-523 59-110 (121)
149 1p6r_A Penicillinase repressor 25.0 87 0.003 24.0 4.6 49 471-524 6-58 (82)
150 1wfk_A Zinc finger, FYVE domai 24.4 66 0.0023 26.0 3.8 34 45-79 8-42 (88)
151 2fxa_A Protease production reg 23.8 56 0.0019 30.1 3.7 55 465-524 39-93 (207)
152 2yqq_A Zinc finger HIT domain- 23.7 70 0.0024 24.0 3.4 36 42-81 8-43 (56)
153 2fu4_A Ferric uptake regulatio 23.2 92 0.0031 23.9 4.4 33 492-524 32-69 (83)
154 1r7j_A Conserved hypothetical 22.9 84 0.0029 25.5 4.2 35 489-524 17-51 (95)
155 1x4s_A Protein FON, zinc finge 22.9 68 0.0023 24.4 3.2 35 44-79 9-44 (59)
156 2jrz_A Histone demethylase jar 22.8 1.1E+02 0.0039 25.8 5.2 36 113-149 43-90 (117)
157 1sd4_A Penicillinase repressor 22.8 88 0.003 25.7 4.5 50 470-524 6-59 (126)
158 2nyx_A Probable transcriptiona 22.7 1.1E+02 0.0036 26.7 5.2 50 470-524 41-90 (168)
159 2jxj_A Histone demethylase jar 22.5 84 0.0029 25.5 4.1 37 113-149 39-86 (96)
160 2xb0_X Chromo domain-containin 22.4 1.2E+02 0.0042 29.7 6.0 46 104-149 3-52 (270)
161 2k6x_A Sigma-A, RNA polymerase 22.1 1.5E+02 0.0051 22.8 5.3 41 482-522 12-57 (72)
162 2lm1_A Lysine-specific demethy 22.0 1.2E+02 0.004 25.1 5.0 37 113-149 47-94 (107)
163 1p4x_A Staphylococcal accessor 21.8 1.1E+02 0.0039 29.2 5.6 57 464-524 148-205 (250)
164 2vrw_B P95VAV, VAV1, proto-onc 21.8 62 0.0021 33.0 3.9 36 45-81 356-393 (406)
165 2cxy_A BAF250B subunit, HBAF25 21.2 1.2E+02 0.0042 25.9 5.1 36 113-149 54-101 (125)
166 2qvo_A Uncharacterized protein 20.9 51 0.0017 26.3 2.4 56 467-523 5-60 (95)
167 2g9w_A Conserved hypothetical 20.5 1E+02 0.0035 26.2 4.5 49 471-524 6-59 (138)
No 1
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=99.94 E-value=9.3e-27 Score=202.28 Aligned_cols=85 Identities=29% Similarity=0.479 Sum_probs=81.7
Q ss_pred CCCCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHC
Q 009788 441 SSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKK 520 (525)
Q Consensus 441 ~~~~~~~l~i~~~pg~~LLs~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~ 520 (525)
.++.+.+|||.++||++|||++|++||+++||+|.+||.+|++||+|+.++|.++++||+.+|+||++|+++|||||+++
T Consensus 23 ~r~~~~~ldi~~~pg~~LLs~~E~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kID~~K~~rIydff~~~ 102 (108)
T 2cuj_A 23 GRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIRE 102 (108)
T ss_dssp CCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred CCCCCCccCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHHc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009788 521 GLAPP 525 (525)
Q Consensus 521 Gwi~~ 525 (525)
|||++
T Consensus 103 GWi~~ 107 (108)
T 2cuj_A 103 GYITK 107 (108)
T ss_dssp TSSCC
T ss_pred CCCCC
Confidence 99974
No 2
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=99.93 E-value=2e-26 Score=194.63 Aligned_cols=83 Identities=30% Similarity=0.490 Sum_probs=79.4
Q ss_pred CCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCC
Q 009788 443 SHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGL 522 (525)
Q Consensus 443 ~~~~~l~i~~~pg~~LLs~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gw 522 (525)
....||||+++||++|||++|++||+++||+|.+||.+|++||+|+.++|.++++||+.+|+||++|+++|||||+++||
T Consensus 7 ~~~~~ldi~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~li~E~~~~g~l~k~da~~~~kiD~~K~~~iydf~~~~Gw 86 (90)
T 2aqe_A 7 RSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREGY 86 (90)
T ss_dssp CSSCCSSSSSSSSTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSSSSSHHHHHHHHHHHHTTS
T ss_pred CCCCCCCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHcccHHHHHHHHHHHHHcCC
Confidence 34478999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CCC
Q 009788 523 APP 525 (525)
Q Consensus 523 i~~ 525 (525)
|++
T Consensus 87 i~~ 89 (90)
T 2aqe_A 87 ITK 89 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 974
No 3
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.3e-26 Score=190.77 Aligned_cols=81 Identities=31% Similarity=0.542 Sum_probs=77.2
Q ss_pred CCCCcc-cccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHHhhhhccCchhHHHHHHHHHHC
Q 009788 443 SHVNDL-YIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKK 520 (525)
Q Consensus 443 ~~~~~l-~i~~~pg~~LLs~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~-~G~lkk~dA~~l~kiD~~K~~rIydFlv~~ 520 (525)
+.+.|+ ||+++||++|||++|++||+++||+|.+||.+|++||+|+++ +|.++++||+.+|+||++|+++|||||+++
T Consensus 6 ~~~~~l~di~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~Li~E~~k~g~~lkk~da~~~~kiD~~K~~~iydf~~~~ 85 (88)
T 2elj_A 6 SGNMTISDIQHAPDYALLSNDEQQLCIQLKILPKPYLVLKEVMFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQSQ 85 (88)
T ss_dssp CSCCCSHHHHTSTTCSSSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCccccccCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHcccHHHHHHHHHHHHHc
Confidence 445789 999999999999999999999999999999999999999997 566999999999999999999999999999
Q ss_pred CCC
Q 009788 521 GLA 523 (525)
Q Consensus 521 Gwi 523 (525)
|||
T Consensus 86 Gwi 88 (88)
T 2elj_A 86 NWM 88 (88)
T ss_dssp TCC
T ss_pred CCC
Confidence 998
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.57 E-value=3.4e-15 Score=115.90 Aligned_cols=56 Identities=43% Similarity=0.844 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhC-CCCHHHHHHHHHhhccC
Q 009788 97 NLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMN 152 (525)
Q Consensus 97 ~~~~p~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg-tkt~~ec~~hy~~~yi~ 152 (525)
++++|++...||++||.+|+++|+.||.+||..||.+|+ +||+.||+.||.++|++
T Consensus 2 ~~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 2 SSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CSCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 357899999999999999999999999999999999999 89999999999999984
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=111.98 Aligned_cols=55 Identities=33% Similarity=0.850 Sum_probs=51.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCCCCCC
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFP 157 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~~~~p 157 (525)
.....||++|+.+||+||++|| +||..||++|++||+.||+.||.++|+++++..
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~ 70 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLE 70 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhcccccccc
Confidence 3468999999999999999999 999999999999999999999999999987653
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=2.8e-13 Score=105.70 Aligned_cols=56 Identities=38% Similarity=0.678 Sum_probs=51.9
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCCC
Q 009788 99 SFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSP 154 (525)
Q Consensus 99 ~~p~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~~ 154 (525)
+.++....||++||.+|+++|+.||.+||..||.+|++||+.||+.||.++++.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 34677899999999999999999999999999999999999999999999998764
No 7
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=6.2e-13 Score=104.80 Aligned_cols=58 Identities=26% Similarity=0.709 Sum_probs=52.1
Q ss_pred CCCCCCcCCccccccccc-cCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCeeecc
Q 009788 38 GAGEGKRALYHCNYCNKD-ITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (525)
Q Consensus 38 ~~~~~~~~~~~C~~C~~~-i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (525)
.|+++....+.||+|+.. |.+ .||+|++|+|||||..||..|.+.+.|+++|+|+++.
T Consensus 3 s~~~~v~H~~~Cd~C~~~pi~G-~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 3 SGSSGVFHPVECSYCHSESMMG-FRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp CCSSSCCSCSCCSSSCCCSSCS-CEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCcCCceeCCCCcCCCCcceec-ceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 345666677999999986 887 9999999999999999999999999999999999885
No 8
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.13 E-value=5.4e-11 Score=98.48 Aligned_cols=63 Identities=27% Similarity=0.529 Sum_probs=52.9
Q ss_pred CCCCCCcC-Ccccccccc-ccCCceeEEcCCCCC---cccchhhhhcccccCCCCCCCCeeeccCCCCC
Q 009788 38 GAGEGKRA-LYHCNYCNK-DITGKIRIKCAVCPD---FDLCIECFSVGVEVHPHKSNHPYRVMDNLSFP 101 (525)
Q Consensus 38 ~~~~~~~~-~~~C~~C~~-~i~~~~ri~C~~C~d---fdLC~~CF~~G~e~~~H~~~H~y~vi~~~~~p 101 (525)
.+++.... .+.||+|+. +|.+ +||+|++|+| ||||..||..|.+...|+++|+|++|.....|
T Consensus 12 ~~~~~~~H~~~~Cd~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p 79 (82)
T 2fc7_A 12 AESGFVQHVGFKCDNCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP 79 (82)
T ss_dssp SSTTSCEESSCCCSSSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred ccccCCeeCcCCCCCCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence 34444444 789999997 6888 9999999999 99999999999999999999999999764433
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.07 E-value=1.4e-10 Score=87.59 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=43.7
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
...||.+||.+|+++|+.||.++|..||.+|++||+.||+.||.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4689999999999999999988999999999999999999999875
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.06 E-value=1.6e-10 Score=87.31 Aligned_cols=46 Identities=24% Similarity=0.563 Sum_probs=43.6
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
...||.+||.+|+++|..||.+||..||.+|++||+.||+.||.++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5789999999999999999988999999999999999999999865
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.03 E-value=3.2e-10 Score=86.01 Aligned_cols=46 Identities=24% Similarity=0.532 Sum_probs=43.5
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 149 (525)
...||.+||..|+++|+.||.+||..||.+++ +||+.||+++|.++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999999999999 99999999999875
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.03 E-value=4.1e-10 Score=87.51 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=45.0
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
+....||.+||.+|+++|..||.++|..||.+|++||+.||+.||.++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 456899999999999999999988999999999999999999999865
No 13
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=3.8e-10 Score=91.65 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=47.3
Q ss_pred CCCCCCCchhHHHHHHHHHHhCC-----CChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 009788 102 LICPDWNADDEILLLEGIEMYGL-----GNWAEIAEHVGTKTKELCIEHYTNVYMNS 153 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~-----gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~ 153 (525)
+....||.+|+.+|+++|..||. ++|..||.+|++||..||+.||.+++...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999996 78999999999999999999999887653
No 14
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=98.98 E-value=3.8e-10 Score=96.36 Aligned_cols=56 Identities=29% Similarity=0.700 Sum_probs=48.0
Q ss_pred Ccccccccc-ccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCeeeccCCCCCCCCCCCCchhH
Q 009788 46 LYHCNYCNK-DITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDE 112 (525)
Q Consensus 46 ~~~C~~C~~-~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~H~~~H~y~vi~~~~~p~~~~~Wta~Ee 112 (525)
.+.||+|+. +|.+ .||+|++|+|||||..||..+. | ..|.|+.|... ...|++.|+
T Consensus 31 gv~Cd~C~~~pI~G-~RykC~~C~d~DLC~~C~~~~~----H-~~H~f~~i~~~-----~~~w~~~e~ 87 (98)
T 2dip_A 31 GIPCNNCKQFPIEG-KCYKCTECIEYHLCQECFDSYC----H-LSHTFTFREKR-----NQKWRSLEK 87 (98)
T ss_dssp CCCCSSSCCSSCCS-CEEEESSSSSCEEEHHHHHTTS----G-GGSCEEECCSS-----SCCCEECCC
T ss_pred CCCCcCCCCCCccc-CeEECCCCCCccHHHHHHccCC----C-CCCCeeEecCC-----CCCCccccc
Confidence 389999997 6887 9999999999999999999984 8 79999998653 346988765
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.1e-09 Score=87.84 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=45.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
+-...||.+|+.+|+++|..||.++|..||.+|++||+.||+.||.++
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999875
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=1.6e-09 Score=87.42 Aligned_cols=50 Identities=16% Similarity=0.423 Sum_probs=45.6
Q ss_pred CCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhcc
Q 009788 101 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYM 151 (525)
Q Consensus 101 p~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yi 151 (525)
.+....||.+||.+|+++++.|| .+|..||.+|++||..||+.||..++-
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~r~~~~l~ 55 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFK 55 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35578999999999999999999 499999999999999999999998753
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.92 E-value=1.4e-09 Score=85.92 Aligned_cols=46 Identities=22% Similarity=0.580 Sum_probs=43.2
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 149 (525)
...||.+||.+|+++|+.||.++|..||++++ +||+.||+++|.++
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999977 89999999999875
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.91 E-value=1.5e-09 Score=86.69 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=45.0
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhhc
Q 009788 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNVY 150 (525)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~y 150 (525)
-...||.+|+.+|+++|+.||.++|..||.+++ +||..||+.+|.++.
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999999999999 999999999999763
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.83 E-value=2.2e-09 Score=90.81 Aligned_cols=59 Identities=25% Similarity=0.534 Sum_probs=49.4
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh-----ccCCCCCCCCCCc
Q 009788 104 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV-----YMNSPFFPLPDMS 162 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~-----yi~~~~~plp~~~ 162 (525)
...||.+|+.+|++|+..||. ..|+.||.+|++||.+||+.||..+ .+++...|+|...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~ 74 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYR 74 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 468999999999999999984 4599999999999999999999987 6777778888764
No 20
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.81 E-value=2.2e-09 Score=86.86 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=45.0
Q ss_pred CCCCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 009788 102 LICPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNVYMNS 153 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~ 153 (525)
+....||.+|+.+|++||.+||. .+|..||.+|++||..||+.||..+ +.+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHc
Confidence 45678999999999999999984 4799999999999999999999865 443
No 21
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=98.81 E-value=2e-09 Score=81.48 Aligned_cols=46 Identities=37% Similarity=0.921 Sum_probs=39.8
Q ss_pred CcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCeeecc
Q 009788 43 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (525)
Q Consensus 43 ~~~~~~C~~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (525)
+...+.||+|+++| + .||+|++|+|||||..||..+. | .|++..|.
T Consensus 3 ~~~~~~Cd~C~~~i-g-~R~~C~~C~dyDLC~~C~~~~~----H--~H~m~~~~ 48 (52)
T 1tot_A 3 DRFVYTCNECKHHV-E-TRWHCTVCEDYDLCINCYNTKS----H--THKMVKWG 48 (52)
T ss_dssp CSSCEEETTTTEEE-S-SEEEESSSSSCEECHHHHHHHC----C--CSSEEEEC
T ss_pred CcCEEECCCCCCCC-c-ceEEcCCCCCchhHHHHHhCCC----C--CCceEEec
Confidence 34668999999996 4 8999999999999999999975 6 69888873
No 22
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.77 E-value=6.3e-09 Score=83.93 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=42.9
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
...||++|+.+|.+|+..|+. ++|+.||.+||+||++||+.||..+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999986 5799999999999999999999977
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=2.4e-08 Score=78.94 Aligned_cols=47 Identities=26% Similarity=0.498 Sum_probs=42.1
Q ss_pred CCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 101 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 101 p~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
.+....||.+||.+|+++++.||. +|..||..+ +||+.||+.||..+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~~~-gRt~~qcr~Rw~~~ 52 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPII-GRTAAQCLEHYEFL 52 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHHHH-SSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhccc-CcCHHHHHHHHHHH
Confidence 355789999999999999999994 999999955 59999999999876
No 24
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.14 E-value=2.1e-09 Score=90.32 Aligned_cols=50 Identities=30% Similarity=0.486 Sum_probs=45.8
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 99 SFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 99 ~~p~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
+.++..+.||.+|+.+|++++..|| .+|..||.+|++||..||+.||..+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 4556788999999999999999999 4899999999999999999999854
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.65 E-value=2.7e-08 Score=86.02 Aligned_cols=46 Identities=20% Similarity=0.469 Sum_probs=43.4
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 105 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
..||.+||.+|+++|+.||.++|..||.+|++||+.||+.||.++.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999889999999999999999999998763
No 26
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.65 E-value=3e-08 Score=82.15 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=42.9
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHH----hCCCCHHHHHHHHHhhc
Q 009788 105 PDWNADDEILLLEGIEMYGLGNWAEIAEH----VGTKTKELCIEHYTNVY 150 (525)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~gnW~~Ia~~----vgtkt~~ec~~hy~~~y 150 (525)
..||.+||..|+++|+.||.|+|..|+.. +.+||..+|+++|.++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 36999999999999999999999999997 78999999999999864
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.63 E-value=2.8e-08 Score=85.48 Aligned_cols=48 Identities=23% Similarity=0.552 Sum_probs=44.7
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
..+.||.+|+.+|+++|+.||.+||..||.+|++||+.||+.||.++.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 457899999999999999999889999999999999999999998863
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.57 E-value=3.6e-08 Score=88.28 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=44.3
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
.+.||.+||.+|+++|+.||.+||..||.+|++||+.||+.||.++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 46899999999999999999999999999999999999999999864
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.55 E-value=9.6e-08 Score=85.09 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=45.3
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
+..+.||.+|+.+|+++|+.||.++|..||.+|++||+.+|+.||.++.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 4568999999999999999999889999999999999999999998753
No 30
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.53 E-value=1.3e-07 Score=76.52 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=42.9
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 009788 100 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148 (525)
Q Consensus 100 ~p~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 148 (525)
..+....||.+||.+|++++..|| .+|..||.++ +||..+|+.+|..
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH
Confidence 345678999999999999999999 5799999999 9999999999974
No 31
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.4e-07 Score=73.64 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=41.5
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 009788 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 148 (525)
...||.+|..+|++++.+|| .+|..||.+|++||..||+.||..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999 799999999999999999999864
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.46 E-value=1.9e-07 Score=83.04 Aligned_cols=48 Identities=15% Similarity=0.376 Sum_probs=44.4
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
.-...||.+||.+|+++|+.||. ||..||.+|++||+.||+.||.++.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 44678999999999999999995 9999999999999999999999764
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.42 E-value=3.4e-07 Score=79.05 Aligned_cols=47 Identities=17% Similarity=0.488 Sum_probs=43.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
+..+.||.+||.+|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999 6999999999999999999999864
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.41 E-value=2.8e-07 Score=79.15 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=43.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
+....||.+||..|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999 7999999999999999999999854
No 35
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.35 E-value=5.2e-07 Score=87.01 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=45.1
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 100 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 100 ~p~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
.+-....||.+|..++++|+..|| .+|..||++|||||..||+.||.++-
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 334567999999999999999999 79999999999999999999998653
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.35 E-value=4.3e-07 Score=80.73 Aligned_cols=47 Identities=26% Similarity=0.551 Sum_probs=43.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
+..+.||.+||.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4467899999999999999999 7999999999999999999999765
No 37
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.35 E-value=5.1e-07 Score=79.84 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=44.5
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhc
Q 009788 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY 150 (525)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~y 150 (525)
-...||.+||..|++||+.||.|+|..|+.+. .+||..+|+++|.++.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999999986 6899999999999875
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.33 E-value=4.2e-07 Score=78.38 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=45.4
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhccC
Q 009788 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVYMN 152 (525)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~yi~ 152 (525)
-...||.+||..|++||+.||.|+|..|+... .+||..+|+++|.++.-.
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 46799999999999999999999999999976 689999999999987643
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.31 E-value=5.7e-07 Score=80.45 Aligned_cols=48 Identities=13% Similarity=0.385 Sum_probs=44.3
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
+..+.||.+||.+|++++..|| ++|..||.+|++||..+|+.||..+.
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSI 99 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4467899999999999999999 89999999999999999999998763
No 40
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.28 E-value=8.7e-07 Score=78.84 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=43.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
+-.+.||.+||..|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999 7999999999999999999999854
No 41
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.27 E-value=1.8e-06 Score=69.49 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=40.7
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
...||.+|+.+|..|+.+|+- +.|+.||.++ +||.+||+.||..+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 568999999999999999984 4599999999 59999999999875
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.27 E-value=6.6e-07 Score=79.01 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=44.9
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhc
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY 150 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~y 150 (525)
.-...||.+||..|+++|+.||.|+|..|+.+. .+||..+|+++|.++.
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 346899999999999999999999999999996 6899999999999864
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.25 E-value=1.1e-06 Score=80.89 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=44.7
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
+....||.+|+..|++++..||.++|..||.+|++||+.+|+.||.++
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 446899999999999999999977899999999999999999999875
No 44
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.00 E-value=6.3e-06 Score=75.91 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=43.7
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
+-...||.+|+..|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999 7999999999999999999999864
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=1.3e-05 Score=62.87 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=41.7
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHH-hCCCCHHHHHHHHHh
Q 009788 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYTN 148 (525)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~-vgtkt~~ec~~hy~~ 148 (525)
+....||++|-.++++|+.+|| -||..|+.+ |++||..||..+|..
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 3467999999999999999999 699999996 999999999999863
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.92 E-value=1e-05 Score=86.47 Aligned_cols=47 Identities=19% Similarity=0.507 Sum_probs=43.7
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
....||.+|-.++++||..|| .||..||++|||||..||+.||.++.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467999999999999999999 79999999999999999999998654
No 47
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.91 E-value=2.2e-06 Score=68.69 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=39.5
Q ss_pred CCCCCchhHHHHHHHHHHhCCC---ChHHHHHHhCCCCHHHHHHHHH
Q 009788 104 CPDWNADDEILLLEGIEMYGLG---NWAEIAEHVGTKTKELCIEHYT 147 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~g---nW~~Ia~~vgtkt~~ec~~hy~ 147 (525)
...||.+|..+|-.||.+|+-+ .|+.||..||+||++||+.||.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4689999999999999999865 6999999999999999999985
No 48
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.75 E-value=3.4e-05 Score=61.70 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=40.7
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHH-hCCCCHHHHHHHHHh
Q 009788 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYTN 148 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~-vgtkt~~ec~~hy~~ 148 (525)
...||++|-.++.+|+..|| -||..|+.+ |++||..||..+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 46899999999999999999 599999995 999999999999974
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.74 E-value=4e-05 Score=59.61 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=41.4
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHH---HhCCCCHHHHHHHHHhh
Q 009788 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAE---HVGTKTKELCIEHYTNV 149 (525)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~---~vgtkt~~ec~~hy~~~ 149 (525)
....||.+|+..|+++|+.||- +|..|+. ++..||.-..+++|.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHH
Confidence 4678999999999999999996 9999994 66789999999999875
No 50
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.61 E-value=6.3e-05 Score=63.58 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=41.2
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 009788 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 148 (525)
...||.+|..++.+++..|| .+|..||++|++||..||..+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999 799999999999999999999963
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.50 E-value=5.6e-05 Score=73.59 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=42.4
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCC-----hHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 103 ICPDWNADDEILLLEGIEMYGLGN-----WAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gn-----W~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
-...||.+||..||+++.++|-.+ |..||.+|.+||..+|+.||..+-
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYL 59 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356899999999999999998432 999999999999999999998763
No 52
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.20 E-value=0.0068 Score=50.91 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHh-----CCCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHV-----GTKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~v-----gtkt~~ec~~hy~~~ 149 (525)
..+||.+|+..|++.++.|| ..|--|++.. ++||.++.+.+|..+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 37999999999999999999 5899999999 479999999999865
No 53
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.05 E-value=0.0094 Score=49.49 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=41.1
Q ss_pred CCCCchhHHHHHHHHHHhCC--CChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 105 PDWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~--gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
--||.++|..+|.++++-|. .-|..||..+|+|+++|+.++|.++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 36999999999999999984 3699999999999999999999875
No 54
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.04 E-value=0.0049 Score=47.45 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=40.3
Q ss_pred CCCCCchhHHHHHHHHHHh--------CCCChHHHHH-HhCCCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMY--------GLGNWAEIAE-HVGTKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~--------G~gnW~~Ia~-~vgtkt~~ec~~hy~~~ 149 (525)
+..||++||..|++.|..+ |---|+++|+ .+..+|-..|++||.+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 3579999999999999999 3224999999 89999999999999984
No 55
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=95.82 E-value=0.026 Score=48.29 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=60.0
Q ss_pred cCCCCHHHHHHHHHh------CCCchHHHHHHHHHHHHHHh--CCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 456 TQLLSEAEKRLCCEI------RLAPPLYLRMQEVMSREIFS--GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 456 ~~LLs~~Ek~LC~~l------rL~P~~YL~iK~~LirE~~~--~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+..++-|++.+-.+ .=.|..||.|...||.-+.. .-.|+.++|+..+.-|++-+.||+.||..-|+|.
T Consensus 22 ~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN 98 (104)
T 2fq3_A 22 LEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLIN 98 (104)
T ss_dssp TTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSS
T ss_pred cccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHHHHHcCeec
Confidence 467888898888875 34699999999999988873 3479999999999899999999999999999995
No 56
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.81 E-value=0.0063 Score=60.65 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=28.6
Q ss_pred CCCCCCCCchhHHHHHHHHHHhCCCChHHHHH
Q 009788 101 PLICPDWNADDEILLLEGIEMYGLGNWAEIAE 132 (525)
Q Consensus 101 p~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~ 132 (525)
+-+.-.|+++|+..||-||..||||+|+.|-.
T Consensus 165 ~~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 165 QNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp TTSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 34567899999999999999999999999955
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.39 E-value=0.013 Score=55.89 Aligned_cols=31 Identities=39% Similarity=0.717 Sum_probs=27.7
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHH
Q 009788 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEH 133 (525)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~ 133 (525)
+...||.+||..||-||..||+|+|+.|-.-
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3568999999999999999999999999663
No 58
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.38 E-value=0.012 Score=59.43 Aligned_cols=48 Identities=29% Similarity=0.455 Sum_probs=42.7
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 009788 105 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNS 153 (525)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~ 153 (525)
.+||..+-..++.|++.||-++|+.||..|++||++|++ +|.+.|+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~-~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVI-EYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHH-HHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHH-HHHHHHHHh
Confidence 489999999999999999999999999999999999995 555666654
No 59
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=94.60 E-value=0.018 Score=47.22 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=37.2
Q ss_pred CCCCchhHHHHHHHHHHhCC---------CChHHHHHHhC----CCCHHHHHHHHHhh
Q 009788 105 PDWNADDEILLLEGIEMYGL---------GNWAEIAEHVG----TKTKELCIEHYTNV 149 (525)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~---------gnW~~Ia~~vg----tkt~~ec~~hy~~~ 149 (525)
..||.+|.++||++...... .-|+.||+.|. .+|+.||+..|.++
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 57999999999999864221 15999999986 59999999999875
No 60
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.33 E-value=0.053 Score=46.94 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=59.3
Q ss_pred ccCCCCHHHHHHHHHh-----CCCchHHHHHHHHHHHHHH--hCCCCCHHHHhhhhc--cCchhHHHHHHHHHHCCCCC
Q 009788 455 ETQLLSEAEKRLCCEI-----RLAPPLYLRMQEVMSREIF--SGNVNNKADAHHLFK--IEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 455 g~~LLs~~Ek~LC~~l-----rL~P~~YL~iK~~LirE~~--~~G~lkk~dA~~l~k--iD~~K~~rIydFlv~~Gwi~ 524 (525)
..+..++-|++.+-.+ .=-|..||.|...||.-+. ..-.|+..+|+..+. -|++-+.||+.||-..|+|.
T Consensus 23 ~~~~ih~iEk~~lPefF~g~~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~RVh~FLe~wGLIN 101 (111)
T 2dce_A 23 DRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAIN 101 (111)
T ss_dssp CSSCCCHHHHTTSGGGGSCCSSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHHHHHHHHHHSSSS
T ss_pred CcccCCHHHHHhChHHhcCCcccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHHHHHHHHHcCeee
Confidence 3567888888888665 4489999999999998877 345799999998884 79999999999999999995
No 61
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.06 E-value=0.0096 Score=46.85 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=39.4
Q ss_pred CCCCchhHHHHHHHHHHhCC--CChHHHHHHhCCCCHHHHHHHHHhh
Q 009788 105 PDWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV 149 (525)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~--gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (525)
--||.+||..+|..+++-|. .-|..||..+ +||++|+..+|.+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 36999999999999999984 2699999999 79999999999875
No 62
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.95 E-value=0.086 Score=44.11 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=40.9
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC-----CCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-----TKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg-----tkt~~ec~~hy~~~ 149 (525)
..+||.+|+..|++.++.|++ .|--|++... .||.++.+.||..+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 468999999999999999994 8999999874 69999999999875
No 63
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.95 E-value=0.093 Score=40.99 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=41.6
Q ss_pred CCCCCchhHHHHHHHHHHhCCCC--hHHHHHHhC--CCCHHHHHHHHHhhcc
Q 009788 104 CPDWNADDEILLLEGIEMYGLGN--WAEIAEHVG--TKTKELCIEHYTNVYM 151 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gn--W~~Ia~~vg--tkt~~ec~~hy~~~yi 151 (525)
+-.||.+....+++||+.+|.+. |..|.+.|+ +-|..+++.|..+|.+
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999432 789999998 5799999999998754
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=92.59 E-value=0.022 Score=60.93 Aligned_cols=45 Identities=16% Similarity=0.416 Sum_probs=0.0
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 009788 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148 (525)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 148 (525)
+...||.+|..++.+++..|| .||..|+.+|++||..+|..+|+.
T Consensus 188 ~~d~WT~eE~~lFe~al~~yG-KdF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHG-KTFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp ----------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcC-ccHHHHHHHcCCCCHHHHHHHhcc
Confidence 456899999999999999999 799999999999999999998865
No 65
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=89.80 E-value=0.22 Score=40.10 Aligned_cols=42 Identities=31% Similarity=0.808 Sum_probs=32.1
Q ss_pred ccccccC-CceeEEcCCCC---CcccchhhhhcccccCCCCCCCCeeeccC
Q 009788 51 YCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMDN 97 (525)
Q Consensus 51 ~C~~~i~-~~~ri~C~~C~---dfdLC~~CF~~G~e~~~H~~~H~y~vi~~ 97 (525)
.|++.+. +.+.|+|.+|. ...||..||..+. |. .|.|.+...
T Consensus 6 ~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~----H~-gH~~~~~~s 51 (75)
T 3ny3_A 6 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSI----HR-DHRYRMTTS 51 (75)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSG----GG-GSCEEEEEC
T ss_pred ccCCcccCCCEEEECccCCCCCCeeEChHHCCCCC----cC-CceEEEEEc
Confidence 4777763 56899999995 3569999999965 74 688998743
No 66
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=89.48 E-value=0.27 Score=49.68 Aligned_cols=46 Identities=9% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHH------------HhCCCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMYGL---GNWAEIAE------------HVGTKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~------------~vgtkt~~ec~~hy~~~ 149 (525)
...||.+|+..||=++..||+ |+|+.|-. ++-+||+.|+..|-..+
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 578999999999999999999 99999974 45589999988776554
No 67
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=89.05 E-value=0.31 Score=50.48 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=50.6
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhC-CCCHHHHHHHHHhhccCCCCCCCCCCccccc
Q 009788 105 PDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMNSPFFPLPDMSHVVG 166 (525)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg-tkt~~ec~~hy~~~yi~~~~~plp~~~~~~~ 166 (525)
.+|+..+=..++.|++.||-++-+.||..|+ +||++|++ .|.+.|...- -.+.+....|+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry-~Ei~d~erii~ 184 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNI-ERIEDYEKYLK 184 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTC-SSCSCCTTTHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhh-hhhccHHHHHH
Confidence 5899999999999999999999999999998 89999999 7888888763 34555555444
No 68
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=88.68 E-value=0.34 Score=39.65 Aligned_cols=41 Identities=29% Similarity=0.579 Sum_probs=31.8
Q ss_pred ccccccC-CceeEEcCCCC---CcccchhhhhcccccCCCCCCCCeeecc
Q 009788 51 YCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (525)
Q Consensus 51 ~C~~~i~-~~~ri~C~~C~---dfdLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (525)
.|+..+. +.+.|+|..|. ...||..||-.+. |. .|.|.+..
T Consensus 10 ~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~----H~-gH~~~~~~ 54 (82)
T 3nis_A 10 NCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKD----HV-NHHVCTDI 54 (82)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGG----GT-TSCEEEEE
T ss_pred CCCCcccCCCEEEEeeccCCCCCceEchhhCCCCC----cC-CceEEEEE
Confidence 5777763 56899999995 3569999999965 74 78998764
No 69
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=87.07 E-value=0.32 Score=40.24 Aligned_cols=32 Identities=31% Similarity=0.713 Sum_probs=27.9
Q ss_pred CccccccccccCCceeEEcCCCCCcccchhhhhc
Q 009788 46 LYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 79 (525)
Q Consensus 46 ~~~C~~C~~~i~~~~ri~C~~C~dfdLC~~CF~~ 79 (525)
.+.|+.|...+.+ .+|+|..|. |+|-+.|...
T Consensus 47 ~~~C~~C~~~~~~-~~Y~C~~C~-f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTI-WSYHCDECD-FDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCS-CEEECTTTC-CCCCHHHHHC
T ss_pred CeEeCCCCCcCCC-cEEEcCCCC-CeEcHHhcCC
Confidence 4789999999876 899999995 9999999864
No 70
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=86.98 E-value=0.55 Score=44.38 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=37.5
Q ss_pred CCCCchhHHHHHHHHHHhC--CCChHHHHHHhC--CCCHHHHHHHHH
Q 009788 105 PDWNADDEILLLEGIEMYG--LGNWAEIAEHVG--TKTKELCIEHYT 147 (525)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G--~gnW~~Ia~~vg--tkt~~ec~~hy~ 147 (525)
.+||..|-..|+.|+..|| .+.|++|+.... .||.++++..|.
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~ 54 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGE 54 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHH
Confidence 6899999999999999999 678999998754 799999986443
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=75.67 E-value=2.8 Score=43.33 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=38.0
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHh------------CCCCHHHHHHHHHh
Q 009788 104 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHV------------GTKTKELCIEHYTN 148 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~~v------------gtkt~~ec~~hy~~ 148 (525)
...||.+||.-||=++..||+ |+|+.|-..| .+||+.|+..|-..
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t 287 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT 287 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence 568999999999999999999 9999996654 47999998765543
No 72
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=75.20 E-value=2 Score=33.47 Aligned_cols=33 Identities=39% Similarity=0.839 Sum_probs=27.2
Q ss_pred CCccccccccccCCceeEEcCCCCCcccchhhhhccc
Q 009788 45 ALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGV 81 (525)
Q Consensus 45 ~~~~C~~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~ 81 (525)
-...|.+|..+-+ ++|..|.+--.|..||..+-
T Consensus 7 e~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT----LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC----EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe----EEecCCCCceehHHHHHHHc
Confidence 4567999999844 79999987667999999865
No 73
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=74.09 E-value=2.4 Score=35.07 Aligned_cols=32 Identities=28% Similarity=0.886 Sum_probs=27.3
Q ss_pred cccccccccc----CCceeEEcCCCCCcccchhhhhc
Q 009788 47 YHCNYCNKDI----TGKIRIKCAVCPDFDLCIECFSV 79 (525)
Q Consensus 47 ~~C~~C~~~i----~~~~ri~C~~C~dfdLC~~CF~~ 79 (525)
..|.+|+-++ .+.+++-|.+|. |-+|-.||-.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~-FPvCrpCyEY 52 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECG-FPACRPCYEY 52 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSC-CCCCHHHHHH
T ss_pred CccccccCccccCCCCCEEEeeeccC-ChhhHHHHHH
Confidence 5799999775 455999999997 9999999975
No 74
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=61.65 E-value=3.6 Score=31.44 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=25.2
Q ss_pred ccccccccccCCceeEEcCCCCCcccchhhhh
Q 009788 47 YHCNYCNKDITGKIRIKCAVCPDFDLCIECFS 78 (525)
Q Consensus 47 ~~C~~C~~~i~~~~ri~C~~C~dfdLC~~CF~ 78 (525)
..|-+|+..+....+|+|..|. ..+|..|=.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~-~~FC~dCD~ 46 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQ-NVFCVDCDV 46 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTT-CCBCHHHHH
T ss_pred CcccccCcccCCCccEECCccC-cCcccchhH
Confidence 3599999998765679999997 778999843
No 75
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=53.78 E-value=15 Score=32.01 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=42.1
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 467 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 467 C~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...++|.|.+|..+--+...+-..+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 26 l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 26 LRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp HGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 4568999999987766654444456678888888888999999999999999999983
No 76
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=52.75 E-value=20 Score=30.27 Aligned_cols=56 Identities=9% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 82 (142)
T 2bv6_A 27 NKVFKKYNLTYPQFLVLTILW-----DESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIK 82 (142)
T ss_dssp HHTHHHHTCCHHHHHHHHHHH-----HSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEE
T ss_pred HHHhhhcCCCHHHHHHHHHHH-----HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 455678899998887665432 45678888888888999999999999999999984
No 77
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=51.38 E-value=23 Score=30.34 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 462 AEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 462 ~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.-...+..++|.|..|..+.-+ .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~~~~lt~~q~~iL~~l------~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 26 LLKDLQTEYGISAEQSHVLNML------SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH------HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHHhhcCCCCHHHHHHHHHH------HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3345567789999999888655 34678888877788999999999999999999984
No 78
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=49.59 E-value=34 Score=29.44 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 463 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 463 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+.|...++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 38 ~~~l~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~ 94 (162)
T 2fa5_A 38 AKVYGDRYGMAIPEWRVITILA-----LYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIR 94 (162)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH-----HSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 4455577899999988765442 36778888888888999999999999999999984
No 79
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=49.45 E-value=15 Score=28.67 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 482 EVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 482 ~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
..++.-...+|.++..+.-..+.+...-+++..+.|.+.|+|.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444444466889999988889999999999999999999984
No 80
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=49.44 E-value=35 Score=27.05 Aligned_cols=58 Identities=10% Similarity=0.237 Sum_probs=46.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 463 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 463 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+..+....+|.|..+..|..++ ..++.++..+.-..+.+...-+.++.+-|.+.|||.
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~l~----~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 10 KDEIRCCYKITDTDVAVLLKMV----EIEKPITSEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH----HHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhcCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 3455566889988877665544 136778888888889999999999999999999984
No 81
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=48.51 E-value=25 Score=29.77 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=45.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 21 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 21 DKWIGQQDLNYNLFAVLYTLA-----TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 456778999999998876553 33458888888888999999999999999999984
No 82
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=47.89 E-value=37 Score=29.47 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=47.5
Q ss_pred CHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 460 SEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 460 s~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...=......++|.|..|..+.-+- ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 32 ~~~~~~~l~~~glt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 32 SKYLTEHLSALEISLPQFTALSVLA-----AKPNLSNAKLAERSFIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHH-----HCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeE
Confidence 3333445567899999998776443 45678888888888999999999999999999984
No 83
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=45.85 E-value=28 Score=29.10 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=44.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 465 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 465 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 27 PSLNQHGLTEQQWRVIRILR-----QQGEMESYQLANQACILRPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHTCCHHHHHHHHHHH-----HHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 34557899999888776443 34567888888888999999999999999999984
No 84
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=45.80 E-value=39 Score=28.46 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=42.9
Q ss_pred HHHHHH--hCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCE--IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~--lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...+.. ++|.|..|..+.-+. .+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 25 ~~~l~~~~~~lt~~~~~vL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 25 QSELDCQRLDLTPPDVHVLKLID-----EQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHH-----HTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEE
T ss_pred HHHHhhccCCCCHHHHHHHHHHH-----hCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 445666 899999998776443 45678888888888999999999999999999984
No 85
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=45.53 E-value=29 Score=33.75 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=22.8
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 126 NWAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 126 nW~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
-|..||++..++|....+++|.++-
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl 197 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFL 197 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHH
Confidence 5999999999999999999998753
No 86
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=44.45 E-value=29 Score=29.17 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
......++|.|..|..+.-+.- ..++.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 27 ~~~~~~~~lt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 84 (127)
T 2frh_A 27 SLIKKEFSISFEEFAVLTYISE---NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHH---TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHcCCCHHHHHHHHHHHh---ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4556788999999987765431 122678888888888999999999999999999994
No 87
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=43.55 E-value=27 Score=29.40 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 19 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 19 NIEFKELSLTRGQYLYLVRVC-----ENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHTGGGTCTTTHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 345567889999988765442 45678888888889999999999999999999984
No 88
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=43.33 E-value=42 Score=26.48 Aligned_cols=55 Identities=7% Similarity=0.116 Sum_probs=43.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 465 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 465 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.....++|.|..+..+.-+ ..+|.++..+.-..+.++...+.++.+-|++.|||.
T Consensus 11 ~~l~~~~l~~~~~~il~~l-----~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 11 KALEKLSFKPSDVRIYSLL-----LERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHTCCCHHHHHHHHHH-----HHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHH-----HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4566888988877665433 234668888888888999999999999999999984
No 89
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=43.23 E-value=44 Score=27.86 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=44.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGN-VNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G-~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...+..++|.|..|..+.-+.- .+| .++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 24 ~~~~~~~~lt~~~~~iL~~l~~----~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 24 DIFAKKYDLTGTQMTIIDYLSR----NKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHH----TTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHH----CCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEE
Confidence 4455678999998887764431 232 68888888888999999999999999999983
No 90
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=42.69 E-value=36 Score=27.02 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCCC
Q 009788 477 YLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP 525 (525)
Q Consensus 477 YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~~ 525 (525)
|-..++.++ ..+.-+.+-...-|+|--|+..+|.|-|...|+|.|
T Consensus 12 y~~A~~~V~----~~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp 56 (73)
T 2ve8_A 12 YDEAVRFVT----ESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTP 56 (73)
T ss_dssp HHHHHHHHH----HHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHHH----hcCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCc
Confidence 445555554 345566666777799999999999999999999975
No 91
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=42.12 E-value=34 Score=29.28 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=45.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
......++|.|..|..+.-+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 31 EKKLKQFGITYSQYLVMLTLW-----EENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 344567899999988776543 45778888888888999999999999999999984
No 92
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=41.75 E-value=25 Score=28.51 Aligned_cols=36 Identities=17% Similarity=0.589 Sum_probs=29.3
Q ss_pred cCCccccccccccCCceeEEcCCCCCcccchhhhhc
Q 009788 44 RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 79 (525)
Q Consensus 44 ~~~~~C~~C~~~i~~~~ri~C~~C~dfdLC~~CF~~ 79 (525)
.....|..|..-+..+.+++|..-+.-.+|-.|-..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 467899999999998899999876666778777544
No 93
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=41.68 E-value=35 Score=28.38 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=43.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 465 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 465 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
..+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 20 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 20 RELGHLNLTDAQVACLLRIH-----REPGIKQDELATFFHVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHSGGGTCCHHHHHHHHHHH-----HSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456788888887665432 45778888888888999999999999999999984
No 94
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=41.51 E-value=30 Score=28.74 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=44.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhh-hhccCchhHHHHHHHHHHCCCC
Q 009788 466 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHH-LFKIEPSKIDRVYDMLVKKGLA 523 (525)
Q Consensus 466 LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~-l~kiD~~K~~rIydFlv~~Gwi 523 (525)
=|+..+|.+.+|-.+.. ..++|..+..+... ...+|.+-+++=...|++.|||
T Consensus 8 ~~~~~~L~~~QfsiL~~-----L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlV 61 (95)
T 1bja_A 8 KASNDVLNEKTATILIT-----IAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLV 61 (95)
T ss_dssp HHTTTSSCHHHHHHHHH-----HHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSE
T ss_pred hHHhcCCCHHHHHHHHH-----HHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCe
Confidence 47788899988865433 34777889888888 7789999999999999999998
No 95
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=41.12 E-value=40 Score=28.60 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 458 LLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 458 LLs~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+...=......++|.|..|..+.-+.- ..+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 25 ~~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 25 KLKTSADARLAELGLNSQQGRMIGYIYE---NQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp HTTHHHHHHHHHTTCCHHHHHHHHHHHH---HTTTCCCHHHHHHC------CHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHh---CCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 3555556667789999999987765432 122678888888888999999999999999999985
No 96
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=40.46 E-value=36 Score=28.25 Aligned_cols=53 Identities=8% Similarity=0.044 Sum_probs=42.8
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 467 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 467 C~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+...+|.|..|..+..+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~l~~~~~~iL~~l-----~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 26 IEQYDISYVQFGVIQVL-----AKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp TGGGTCCHHHHHHHHHH-----HHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEE
T ss_pred hhhcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCee
Confidence 44577888888766543 246678888888889999999999999999999984
No 97
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=40.38 E-value=40 Score=28.93 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 463 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 463 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
++.|...++|.|..|..+.-+- ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 36 ~~~l~~~~~l~~~~~~iL~~L~----~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~ 93 (160)
T 3boq_A 36 NRQLLDETGLSLAKFDAMAQLA----RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVV 93 (160)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHH----HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 3445558899999998775441 245678888888888999999999999999999984
No 98
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=39.89 E-value=40 Score=28.26 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=46.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...+..++|.|..|..+..+. ..+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~----~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 27 DRRLSHLGLSQARWLVLLHLA----RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHTGGGCCTTTHHHHHHHHH----HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCCCCHHHHHHHHHHH----HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 344567789999987765542 256778888888888999999999999999999984
No 99
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=39.80 E-value=47 Score=28.10 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=45.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 30 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 30 ERGTLREGVTVGQRAILEGLS-----LTPGATAPQLGAALQMKRQYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 345567899999887775442 45678888888888999999999999999999984
No 100
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=39.63 E-value=40 Score=28.70 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 461 EAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 461 ~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
..=.+....++|.|..|..+.-+. ..++.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~l~~~glt~~q~~vL~~l~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 85 (150)
T 3fm5_A 26 GAVNKALVPTGLRVRSYSVLVLAC----EQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVV 85 (150)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHH----HSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH----hCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 333455567899999998776432 244467777777888899999999999999999984
No 101
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=39.07 E-value=49 Score=28.15 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=45.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 86 (154)
T 2qww_A 31 DQNAASLGLTIQQLAMINVIY-----STPGISVADLTKRLIITGSSAAANVDGLISLGLVV 86 (154)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345567889998887765432 45668888888888999999999999999999984
No 102
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=38.70 E-value=33 Score=28.96 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=42.3
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 467 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 467 C~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 30 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 30 IASYDVTPEQWSVLEGIE-----ANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp TTTSSSCHHHHHHHHHHH-----HHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhhCCCCHHHHHHHHHHH-----HcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCee
Confidence 345688888887776443 23677877877888999999999999999999984
No 103
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=38.42 E-value=38 Score=29.25 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 461 EAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 461 ~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
..=.+.+..++|.|..|..+.-+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 37 ~~~~~~l~~~~lt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 37 IYIGKKIEPYGIGSGQFPFLMRLY-----REDGINQESLSDYLKIDKGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHHHGGGTCCTTTHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 333455667899999998776542 35677888878888999999999999999999984
No 104
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=38.36 E-value=49 Score=27.88 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=40.6
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 470 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 470 lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
++|.+..|-.++.+ +.-...++.++..+.-..+.++..-+.++.+-|.+.|||.
T Consensus 9 ~~lt~~~~~~L~~l-~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 9 SNLSRREFSYLLTI-KRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp --CCHHHHHHHHHH-HHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhcCHHHHHHHHHH-HHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 46777777777643 2222256788888888888999999999999999999984
No 105
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=38.19 E-value=43 Score=27.27 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=37.1
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 471 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 471 rL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+|.|.+++.++.+. ++-..| +...+...-+.++...+.+|.+-|.+.|||.
T Consensus 17 ~Lt~~q~~Vl~~I~--~~g~~g-i~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 17 GSDNQEKLVYQIIE--DAGNKG-IWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CSCSSHHHHHHHHH--HHCTTC-EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHH--HcCCCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45677777776544 222345 4445556667899999999999999999985
No 106
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=37.40 E-value=73 Score=24.58 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=32.3
Q ss_pred CCCCcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCeeecc
Q 009788 40 GEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (525)
Q Consensus 40 ~~~~~~~~~C~~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (525)
++.+.....|..|.+.+.- +-++| .|. ..+|.. ..++..|.=..+|.-+.
T Consensus 9 ~~~~~~~~rC~~C~kkvgl-~~f~C-rCg-~~FC~~----HR~~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 9 SRPVRPNNRCFSCNKKVGV-MGFKC-KCG-STFCGS----HRYPEKHECSFDFKEVG 58 (64)
T ss_dssp SCCSCCSCSCTTTCCCCTT-SCEEC-TTS-CEECSS----SCSSTTTTCCCCCSCSC
T ss_pred CCCCCcCCcChhhCCcccc-cCeEe-ecC-CEeccc----CCCccccCCCcchhHHh
Confidence 3444456789999987654 46999 786 456643 34445566666676553
No 107
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=37.02 E-value=40 Score=27.49 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=34.4
Q ss_pred HHHH-hCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 486 REIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 486 rE~~-~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+.+ ..|.++..+.-..|.+...-+++..+.|.++|+|.
T Consensus 8 l~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 8 RDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444 78999999999999999999999999999999873
No 108
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=37.00 E-value=8.6 Score=30.29 Aligned_cols=33 Identities=18% Similarity=0.533 Sum_probs=16.5
Q ss_pred CCCCCCCCcCCccccccccc--cCCceeEEcCCCC
Q 009788 36 GQGAGEGKRALYHCNYCNKD--ITGKIRIKCAVCP 68 (525)
Q Consensus 36 ~~~~~~~~~~~~~C~~C~~~--i~~~~ri~C~~C~ 68 (525)
|+.+.......|.|..|+.. +....-++|..|.
T Consensus 18 ~g~~~~~~~v~Y~C~~CG~~~e~~~~d~irCp~CG 52 (70)
T 1twf_L 18 GTSQARTATLKYICAECSSKLSLSRTDAVRCKDCG 52 (70)
T ss_dssp -------CCCCEECSSSCCEECCCTTSTTCCSSSC
T ss_pred ccccCCCceEEEECCCCCCcceeCCCCCccCCCCC
Confidence 33334445678999999987 3322234555554
No 109
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=36.87 E-value=27 Score=29.58 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=44.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...+..++|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~glt~~q~~vL~~l-----~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 26 TNYLKEYDLTYTGYIVLMAI-----ENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHHGGGTCCHHHHHHHHHS-----CTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeE
Confidence 33456788999888766433 246778888888888999999999999999999984
No 110
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=36.66 E-value=53 Score=27.53 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 463 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 463 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
-...+...+|.|..|..+..+ . +|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~~~l~~~~~~iL~~l-----~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 26 LNRRLGELNLSYLDFLVLRAT-----S-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH-----T-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHH-----h-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 345667788988888776543 2 6778888888888999999999999999999984
No 111
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=36.30 E-value=41 Score=29.16 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 459 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 459 Ls~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+...-...+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 38 ~~~~~~~~~~~~glt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 38 WSSELNQALASEKLPTPKLRLLSSLS-----AYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHH-----HHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 44444556678999999998776553 23567778878888999999999999999999984
No 112
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=35.84 E-value=38 Score=28.92 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 463 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 463 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
-.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 36 ~~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 36 YRGLLKALDLTYPQYLVMLVLW-----ETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHTTTTTCCHHHHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCHHHHHHHHHHH-----hCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 3445567889998887765332 45678888888888999999999999999999983
No 113
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=35.68 E-value=57 Score=27.79 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=45.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+.....+|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 33 ~~~l~~~~lt~~~~~iL~~l-----~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 33 HDHIRAQGLRVPEWRVLACL-----VDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHH-----SSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456789999888765432 356778888888889999999999999999999984
No 114
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=35.58 E-value=42 Score=28.40 Aligned_cols=56 Identities=13% Similarity=0.273 Sum_probs=44.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 32 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 32 REILTNYPITPPQFVALQWLL-----EEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHTTSSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 344567788888887765433 34668888888888999999999999999999984
No 115
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=35.21 E-value=51 Score=28.34 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+.+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 42 ~~~l~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 42 RKEMTALGLSTAKMRALAILS-----AKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVR 97 (162)
T ss_dssp HTTHHHHTCCHHHHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 344567899998888775432 45778888888889999999999999999999984
No 116
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=34.95 E-value=15 Score=28.83 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCcchHHHH
Q 009788 368 QDLKEARAAGCRTSAEAD 385 (525)
Q Consensus 368 ~~Lq~~R~~Gi~tl~e~~ 385 (525)
.-|..|++.||+|+++++
T Consensus 60 ~Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 60 AILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 347899999999999873
No 117
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=34.27 E-value=33 Score=25.56 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhCCCChHHHHHHhCC
Q 009788 110 DDEILLLEGIEMYGLGNWAEIAEHVGT 136 (525)
Q Consensus 110 ~Eel~LLeai~~~G~gnW~~Ia~~vgt 136 (525)
-|...+..+++.+| ||+..+|+.+|-
T Consensus 19 ~E~~~i~~aL~~~~-gn~~~aA~~LGi 44 (63)
T 3e7l_A 19 FEKIFIEEKLREYD-YDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCc
Confidence 46677888999999 999999999984
No 118
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=34.26 E-value=43 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=33.6
Q ss_pred HHH-hCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCC
Q 009788 487 EIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 523 (525)
Q Consensus 487 E~~-~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 523 (525)
+.+ .+|.++.++.-..|.+...-+++..+.|.++|.|
T Consensus 9 ~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 9 DLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 444 7899999999999999999999999999999987
No 119
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=33.82 E-value=59 Score=27.41 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=41.1
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 469 EIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 469 ~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.++|.|..|..+..+ ...|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 35 ~~~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 85 (148)
T 3nrv_A 35 KFGIGMTEWRIISVL-----SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
T ss_dssp GGTCCHHHHHHHHHH-----HHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hcCCCHHHHHHHHHH-----HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 467888888665543 256678888888888999999999999999999984
No 120
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.76 E-value=85 Score=24.91 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=30.9
Q ss_pred CcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCeeecc
Q 009788 43 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (525)
Q Consensus 43 ~~~~~~C~~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (525)
+....+|..|.+.+.- +-++|. |. ..+|.. ..++..|.-..+|.-..
T Consensus 22 k~~~nRC~~CrKkvgL-~gf~Cr-Cg-~~FCs~----HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVGL-TGFDCR-CG-NLFCGL----HRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp CSCTTBCSSSCCBCGG-GCEECT-TS-CEECSS----SCSTTTTTCCCCGGGTS
T ss_pred CCcCCcChhhCCcccc-cCeecC-CC-CEechh----cCCCccCCCcchhhhhc
Confidence 3345689999987653 458999 87 446643 34555677677777553
No 121
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.70 E-value=64 Score=24.92 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=31.3
Q ss_pred CcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCeeecc
Q 009788 43 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (525)
Q Consensus 43 ~~~~~~C~~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (525)
+.....|..|.+.+.- +-++| .|. ..+|.. ..++..|.=+.+|.-..
T Consensus 12 k~~~~rC~~C~kkvgl-~~f~C-rCg-~~FC~~----HRy~e~H~C~fDyk~~g 58 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGL-TGFMC-RCG-TTFCGS----HRYPEVHGCTFDFKSAG 58 (64)
T ss_dssp CSSCCCCTTTCCCCCT-TCEEC-SSS-CEECTT----TCSTTTTTCCCCCSCCC
T ss_pred CCcCCcChhhCCccCc-cCEEe-ecC-CEeccc----cCCcccCCCCchhhHHH
Confidence 4455789999987664 46999 686 556654 34455676666776553
No 122
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=33.43 E-value=47 Score=27.83 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 466 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 466 LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+...+|.|..|..+.-+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 25 VLRDFGITPAQFDILQKIY-----FEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp THHHHTCCHHHHHHHHHHH-----HHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 3456788888887775443 24668888888888999999999999999999984
No 123
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=33.12 E-value=47 Score=26.39 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=38.2
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHH----hhhhccCchhHHHHHHHHHHCCCCC
Q 009788 469 EIRLAPPLYLRMQEVMSREIFSGNVNNKADA----HHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 469 ~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA----~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.++|.|..|..+..+ ..+|.++..+. -..+.++..-+.++.+-|++.|||.
T Consensus 3 ~~~lt~~q~~iL~~l-----~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 3 STPFFYPEAIVLAYL-----YDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp CCSSBCHHHHHHHHH-----TTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 356777777655433 34567777666 5667899999999999999999984
No 124
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.55 E-value=42 Score=28.52 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHHHHHhC-------CCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009788 113 ILLLEGIEMYG-------LGNWAEIAEHVGTKTKELCIEHYTNVY 150 (525)
Q Consensus 113 l~LLeai~~~G-------~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (525)
..|..+|...| -..|.+||..+|-......+.||.++-
T Consensus 52 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L 96 (116)
T 2li6_A 52 FYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRIL 96 (116)
T ss_dssp THHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHH
Confidence 34556666666 137999999999766788889998763
No 125
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=32.23 E-value=52 Score=27.30 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 465 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 465 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
..+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~~~~lt~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 25 EYLSPLDITAAQFKVLCSIR-----CAACITPVELKKVLSVDLGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHTTTTSCHHHHHHHHHHH-----HHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHhhhcCCCHHHHHHHHHHH-----hcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 34556788888887665442 34556777777788999999999999999999984
No 126
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=31.88 E-value=37 Score=29.31 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=44.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 466 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 466 LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
....++|.+..|-.+--+.. ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 27 ~l~~~gLt~~q~~vL~~L~~---~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 27 VVKPYGLTFARYEALVLLTF---SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp HHGGGTCCHHHHHHHHHHHT---SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHHH---CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEE
Confidence 34678999999877643321 245678888888888999999999999999999984
No 127
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=31.59 E-value=84 Score=26.76 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=39.9
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhC-CCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 467 CCEIRLAPPLYLRMQEVMSREIFSG-NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 467 C~~lrL~P~~YL~iK~~LirE~~~~-G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...++|.+..|+.+=-++- -.-.+ ..++..+.-+.+.+++.-+.++.+.|+++|||.
T Consensus 25 y~~lgLt~~e~~vll~L~~-~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 25 YKQLGLGEGELVLLLHMQS-FFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp TTTTTCCHHHHHHHHHHHH-HHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred HHHcCCCHHHHHHHHHHHH-HHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3466777777775433332 11122 237777777778999999999999999999983
No 128
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.35 E-value=55 Score=27.76 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
...+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 27 LESMEKQGVTPAQLFVLASLK-----KHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 445566899999887775442 34567888888888999999999999999999983
No 129
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=31.00 E-value=65 Score=28.00 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 459 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 459 Ls~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~-~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+...=.+.+..++|.|..|..+.-+.- . ++.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~----~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRS----VHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH----HTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEe
Confidence 344445556888999999988753321 2 3578888888888999999999999999999984
No 130
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=30.72 E-value=36 Score=28.72 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=43.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 465 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 465 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+.+...+|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~ 85 (147)
T 1z91_A 31 PLLDKLNITYPQYLALLLLW-----EHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLIT 85 (147)
T ss_dssp HHHTTTCCCHHHHHHHHHHH-----HHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEE
Confidence 34567788888887665443 34567778888888999999999999999999984
No 131
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=30.58 E-value=86 Score=26.06 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=45.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.++...++|.|..+-.+.-+.+ .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 16 ~~~~~~~gl~~~~~~il~~L~~----~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 16 SELAKIHGLNKSVGAVYAILYL----SDKPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH----CSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCChhHHHHHHHHHH----cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4566778999888766654422 34678888888888999999999999999999984
No 132
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=30.37 E-value=72 Score=26.49 Aligned_cols=57 Identities=7% Similarity=0.019 Sum_probs=44.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhC-CCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSG-NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~-G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.......+|.|..|..+.-+.- .+ +.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 21 ~~~~~~~~lt~~~~~vL~~l~~----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 21 DQKLEQFDITNEQGHTLGYLYA----HQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHHGGGTCCHHHHHHHHHHHH----STTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 3445678899988877765431 22 478888888888999999999999999999984
No 133
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=29.97 E-value=87 Score=25.88 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=40.9
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 469 EIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 469 ~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 26 QLGISLTRYSILQTLL-----KDAPLHQLALQERLQIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3588888887665432 34668888888888999999999999999999983
No 134
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=29.81 E-value=95 Score=26.09 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCC-CCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 463 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNV-NNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 463 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~-lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
|..|-..++|.|..+-.+..+. ..+|. ++..+.-..+.++..-+.+..+-|.+.|+|.
T Consensus 15 ~~~l~~~~gLt~~e~~il~~L~----~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 15 EDVIKCALNLTKADLNVMKSFL----NEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH----HSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHH----HCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4555567899988765555433 13444 8888888888999999999999999999983
No 135
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=29.33 E-value=61 Score=24.54 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=34.5
Q ss_pred HHHHHH-hCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 484 MSREIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 484 LirE~~-~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
|+.+.. ++|++....+-+-+.++...+-.+..=|.++|.|.
T Consensus 15 lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 344444 78999999999999999999999999999999874
No 136
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=28.99 E-value=88 Score=26.17 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=42.6
Q ss_pred HHHHHh-CCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 465 RLCCEI-RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 465 ~LC~~l-rL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
..+... +|.|..|..+..+. .+|. +..+.-..+.++..-+.++.+=|++.|||.
T Consensus 27 ~~l~~~~~lt~~~~~iL~~l~-----~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~ 81 (144)
T 3f3x_A 27 NRLGKLMNLSYLDFSILKATS-----EEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVR 81 (144)
T ss_dssp HHHHHHHSCCHHHHHHHHHHH-----HSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH-----HCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 344555 99999987775542 3444 878888888999999999999999999984
No 137
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=28.83 E-value=52 Score=28.16 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=42.0
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 467 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 467 C~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 37 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 37 EEISDMKTTELYAFLYVA-----LFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp HHHHHSBHHHHHHHHHHH-----HHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred hhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345678888877765443 34568888888888999999999999999999984
No 138
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=28.43 E-value=55 Score=33.05 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=40.2
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhc---cCc-hhHHHHHHHHHHCCCC
Q 009788 470 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK---IEP-SKIDRVYDMLVKKGLA 523 (525)
Q Consensus 470 lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~k---iD~-~K~~rIydFlv~~Gwi 523 (525)
=+..|..|+.+++.|..+......++.++...+++ |.. ..+..+..||-+.|.|
T Consensus 11 g~~iP~sW~~l~~~L~~~~~~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~i 68 (332)
T 3dpt_A 11 GTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIV 68 (332)
T ss_dssp ------CHHHHHHHHHHHHHHSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSS
T ss_pred CCccCHHHHHHHHHHHhhhcCCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEE
Confidence 35789999999999998876677899998887764 554 3588999999999986
No 139
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=27.54 E-value=41 Score=27.81 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=37.0
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhc----cCchhHHHHHHHHHHCCCCC
Q 009788 469 EIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 469 ~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~k----iD~~K~~rIydFlv~~Gwi~ 524 (525)
..+|.|..+..++-+. ..|.++..+..+.+. +..+-+.++.+-|+++|||.
T Consensus 30 ~~~LT~~e~~VL~~L~-----~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 30 EFNVSNAELIVMRVIW-----SLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp -CCCCCSCSHHHHHHH-----HHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred CCCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 3578888888876443 245567666666655 35788999999999999984
No 140
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=27.30 E-value=58 Score=31.33 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=45.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~-~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+.+...++|.|.+|+.+.-+. .. .+.++.++.-..+.+|...+.++.+=|.++|||.
T Consensus 24 ~~~l~~~~lt~~q~~vL~~L~----~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~ 81 (250)
T 1p4x_A 24 KKVKPEVDMTIKEFILLTYLF----HQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYIS 81 (250)
T ss_dssp HHHTTTCSSCHHHHHHHHHHH----SCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCE
T ss_pred HHHhhhcCCCHHHHHHHHHHH----hcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 445567889999998876443 12 2467777877788899999999999999999984
No 141
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=27.07 E-value=97 Score=26.79 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=39.7
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 468 CEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 468 ~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
..++|.|..|..+-.+. ..++..+..+.-..+.++..-+.++.+=|++.|||.
T Consensus 25 ~~~gLt~~q~~vL~~L~----~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 25 KPLELTQTHWVTLYNIN----RLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp GGGCCCHHHHHHHHHHH----HSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCHHHHHHHHHHH----HcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 45689999987654331 134556656666677899999999999999999983
No 142
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=26.19 E-value=25 Score=28.03 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCcchHHHH
Q 009788 368 QDLKEARAAGCRTSAEAD 385 (525)
Q Consensus 368 ~~Lq~~R~~Gi~tl~e~~ 385 (525)
.-|..|++.||+|+++++
T Consensus 65 ~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 65 AILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHTCCC-----
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 358899999999999874
No 143
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=26.08 E-value=1.4e+02 Score=28.14 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=42.3
Q ss_pred HHHHHHhCCCchHHHHHHHH-----HHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEV-----MSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGL 522 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~-----LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gw 522 (525)
.+++..+++.+..--.+-.+ =+.+.+..|.++...|+.|..++......+++-++..||
T Consensus 138 ~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~~g~is~~~A~~L~~l~~~~q~~l~~~i~~~~l 201 (230)
T 1vz0_A 138 EEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGL 201 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 35666777766432222111 144566789999999999999998887789999999887
No 144
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=25.82 E-value=84 Score=25.98 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=44.7
Q ss_pred hCCCchHHHHHHHHHHHHHH-hCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 470 IRLAPPLYLRMQEVMSREIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 470 lrL~P~~YL~iK~~LirE~~-~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+|.|..|-.+..+...+.. -+|.++..+..+.+-++..-+++..+-|...|||.
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~ 67 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD 67 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEE
Confidence 57899999888776643333 45778998888889999999999999999999984
No 145
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=25.70 E-value=79 Score=26.08 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=39.1
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 471 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 471 rL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 35 ~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 35 GLTPTQWAALVRLG-----ETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp CCCHHHHHHHHHHH-----HHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67777776654332 34578888888888999999999999999999984
No 146
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=25.68 E-value=81 Score=26.37 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=36.1
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 470 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 470 lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
++|.|..|..+.-+ ..+| ++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 34 ~~lt~~~~~iL~~l-----~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 34 VALTNTQEHILMLL-----SEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp SCCCHHHHHHHHHH-----TTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHH-----HhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 45666666544322 2456 8888877788899999999999999999983
No 147
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=25.67 E-value=69 Score=28.04 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=45.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 462 AEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 462 ~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.-.+....++|.|..|..+..+. ..++.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 41 ~~~~~l~~~glt~~q~~vL~~L~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 41 LIDHRLKPLELTQTHWVTLHNIH----QLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHHTTTTTCCHHHHHHHHHHH----HSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 33444567789999887665432 135668888888888999999999999999999984
No 148
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=25.52 E-value=53 Score=27.74 Aligned_cols=52 Identities=6% Similarity=0.035 Sum_probs=40.0
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCC
Q 009788 472 LAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 523 (525)
Q Consensus 472 L~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 523 (525)
+.+..|-.+++.|..-+..+|.++..+++.++.+--.-+-.|.+||=..||.
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 59 YRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred ECHHHHHHHHHHHHHHHHHCCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 4566777777777554457899999999999976655556799999998873
No 149
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=25.02 E-value=87 Score=23.99 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhc----cCchhHHHHHHHHHHCCCCC
Q 009788 471 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 471 rL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~k----iD~~K~~rIydFlv~~Gwi~ 524 (525)
+|.|..+..++-+. .+|.++..+....+. +..+-+.++.+-|+++|||.
T Consensus 6 ~lt~~e~~vL~~L~-----~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 6 QISDAELEVMKVIW-----KHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp CCCHHHHHHHHHHH-----TSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHH-----cCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeE
Confidence 45555555554221 356777777666664 56789999999999999984
No 150
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=24.40 E-value=66 Score=26.02 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=24.9
Q ss_pred CCccccccccccC-CceeEEcCCCCCcccchhhhhc
Q 009788 45 ALYHCNYCNKDIT-GKIRIKCAVCPDFDLCIECFSV 79 (525)
Q Consensus 45 ~~~~C~~C~~~i~-~~~ri~C~~C~dfdLC~~CF~~ 79 (525)
....|..|....+ ..-+.||-.|. ..+|..|-..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCG-RAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSC-CEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCC-CEEChhHcCC
Confidence 4457999998753 23689999997 5588888654
No 151
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=23.78 E-value=56 Score=30.11 Aligned_cols=55 Identities=9% Similarity=-0.106 Sum_probs=43.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 465 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 465 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
..+..++|.|..|..+.-+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 39 ~~l~~~gLt~~q~~iL~~L~-----~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~ 93 (207)
T 2fxa_A 39 QWLKPYDLNINEHHILWIAY-----QLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLR 93 (207)
T ss_dssp HHTGGGTCCHHHHHHHHHHH-----HHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456789999998775432 23567877888888999999999999999999983
No 152
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.67 E-value=70 Score=24.00 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=25.4
Q ss_pred CCcCCccccccccccCCceeEEcCCCCCcccchhhhhccc
Q 009788 42 GKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGV 81 (525)
Q Consensus 42 ~~~~~~~C~~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~ 81 (525)
-+.....|.+|+. . ..|+|..|.-.-=.+.||-...
T Consensus 8 ~~~~~~~C~vC~~-~---~kY~CPrC~~~yCSl~C~k~Hk 43 (56)
T 2yqq_A 8 LKCSTVVCVICLE-K---PKYRCPACRVPYCSVVCFRKHK 43 (56)
T ss_dssp CCCCCCCCTTTCS-C---CSEECTTTCCEESSHHHHHHHH
T ss_pred cCCCCCccCcCcC-C---CeeeCCCCCCCeeCHHHHHHHH
Confidence 3345557999998 2 4589999984444589998744
No 153
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.19 E-value=92 Score=23.87 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=29.2
Q ss_pred CCCCHHHHhhhh-----ccCchhHHHHHHHHHHCCCCC
Q 009788 492 NVNNKADAHHLF-----KIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 492 G~lkk~dA~~l~-----kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+.++..+....+ .+...-+.+..+.|++.|+|.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 688988888777 789999999999999999973
No 154
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=22.91 E-value=84 Score=25.50 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=29.4
Q ss_pred HhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 489 FSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 489 ~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
+..| +.+.+.-..+.+....++++.+||.++|+|.
T Consensus 17 i~~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~ 51 (95)
T 1r7j_A 17 CKSG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIR 51 (95)
T ss_dssp HTTC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 3456 7777777778899999999999999999984
No 155
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=22.86 E-value=68 Score=24.38 Aligned_cols=35 Identities=20% Similarity=0.659 Sum_probs=25.4
Q ss_pred cCCccccccccccCCceeEEcCCCCCcccc-hhhhhc
Q 009788 44 RALYHCNYCNKDITGKIRIKCAVCPDFDLC-IECFSV 79 (525)
Q Consensus 44 ~~~~~C~~C~~~i~~~~ri~C~~C~dfdLC-~~CF~~ 79 (525)
.....|.+|.........|+|..|. .-.| +.||-.
T Consensus 9 ~~~~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k~ 44 (59)
T 1x4s_A 9 EPAGPCGFCPAGEVQPARYTCPRCN-APYCSLRCYRT 44 (59)
T ss_dssp CCCEEECSSCTTCCEEECEECTTTC-CEESSHHHHHH
T ss_pred CCCCcCcCCCCCcCCCccccCcCCC-CCccChHHHHH
Confidence 3456899999743333679999998 4455 799985
No 156
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=22.79 E-value=1.1e+02 Score=25.83 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCC--------ChHHHHHHhCCCC----HHHHHHHHHhh
Q 009788 113 ILLLEGIEMYGLG--------NWAEIAEHVGTKT----KELCIEHYTNV 149 (525)
Q Consensus 113 l~LLeai~~~G~g--------nW~~Ia~~vgtkt----~~ec~~hy~~~ 149 (525)
..|..+|...| | .|.+||..+|-.+ ....+.||.++
T Consensus 43 ~~Ly~~V~~~G-G~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 43 YSLSKIVVEEG-GYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp HHHHHHHHHHT-CHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcc-CHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 45666777776 4 7999999998532 45677888775
No 157
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.76 E-value=88 Score=25.71 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=36.6
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhc----cCchhHHHHHHHHHHCCCCC
Q 009788 470 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 470 lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~k----iD~~K~~rIydFlv~~Gwi~ 524 (525)
.+|.|..|..+.-+- .+|.++..+....+. ++.+-+.++.+=|+++|||.
T Consensus 6 ~~Lt~~q~~vL~~L~-----~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~ 59 (126)
T 1sd4_A 6 VEISMAEWDVMNIIW-----DKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIK 59 (126)
T ss_dssp CCCCHHHHHHHHHHH-----HSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHH-----hcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceE
Confidence 467788887776433 345566666555554 57999999999999999984
No 158
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=22.75 E-value=1.1e+02 Score=26.69 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=40.8
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 470 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 470 lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
.+|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 41 ~~lt~~~~~iL~~L~-----~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~ 90 (168)
T 2nyx_A 41 ENITIPQFRTLVILS-----NHGPINLATLATLLGVQPSATGRMVDRLVGAELID 90 (168)
T ss_dssp SSCCHHHHHHHHHHH-----HHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHH-----HcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 488888887765432 34568888888888999999999999999999984
No 159
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=22.55 E-value=84 Score=25.48 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=24.3
Q ss_pred HHHHHHHHHhC-C------CChHHHHHHhCCC---C-HHHHHHHHHhh
Q 009788 113 ILLLEGIEMYG-L------GNWAEIAEHVGTK---T-KELCIEHYTNV 149 (525)
Q Consensus 113 l~LLeai~~~G-~------gnW~~Ia~~vgtk---t-~~ec~~hy~~~ 149 (525)
..|-.+|...| + ..|.+||+.+|-. + ..+.+.||.++
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 44555565554 1 3799999999832 2 45677777765
No 160
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=22.42 E-value=1.2e+02 Score=29.71 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=37.4
Q ss_pred CCCCCchhHHHHHHHHHHhC--CCChHHHHHHhC--CCCHHHHHHHHHhh
Q 009788 104 CPDWNADDEILLLEGIEMYG--LGNWAEIAEHVG--TKTKELCIEHYTNV 149 (525)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G--~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 149 (525)
..+||..|-..|+.++..|| .+.|++|+.--. .|+.+.++.-|..+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 46899999999999999999 478999987543 58888877666554
No 161
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=22.07 E-value=1.5e+02 Score=22.78 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCCCHHHHhhhhc-----cCchhHHHHHHHHHHCCC
Q 009788 482 EVMSREIFSGNVNNKADAHHLFK-----IEPSKIDRVYDMLVKKGL 522 (525)
Q Consensus 482 ~~LirE~~~~G~lkk~dA~~l~k-----iD~~K~~rIydFlv~~Gw 522 (525)
..||....+.|.++-.+....++ ++++.+..||++|-+.|.
T Consensus 12 k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 12 KKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp HHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 34565555778899887777664 788999999999999984
No 162
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=22.03 E-value=1.2e+02 Score=25.12 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCC-------CChHHHHHHhCCCC----HHHHHHHHHhh
Q 009788 113 ILLLEGIEMYGL-------GNWAEIAEHVGTKT----KELCIEHYTNV 149 (525)
Q Consensus 113 l~LLeai~~~G~-------gnW~~Ia~~vgtkt----~~ec~~hy~~~ 149 (525)
..|-.+|...|- ..|.+||..+|--+ ....+.||.++
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 456666666661 27999999998532 45677778765
No 163
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=21.80 E-value=1.1e+02 Score=29.21 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=46.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CCCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 009788 464 KRLCCEIRLAPPLYLRMQEVMSREIFSGN-VNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 464 k~LC~~lrL~P~~YL~iK~~LirE~~~~G-~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 524 (525)
..+...++|.|..|..+-.+. ..+| .++..+.-..+.++..-+.++.|=|.+.|||.
T Consensus 148 ~~~~~~~gLt~~q~~vL~~L~----~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~ 205 (250)
T 1p4x_A 148 NIIKKHLTLSFVEFTILAIIT----SQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLI 205 (250)
T ss_dssp HHHHHHCSSCHHHHHHHHHHH----TTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHhhCCCCHHHHHHHHHHH----hCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 556779999999998876542 2333 58888888888999999999999999999984
No 164
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=21.75 E-value=62 Score=32.95 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=28.3
Q ss_pred CCccccccccccCC--ceeEEcCCCCCcccchhhhhccc
Q 009788 45 ALYHCNYCNKDITG--KIRIKCAVCPDFDLCIECFSVGV 81 (525)
Q Consensus 45 ~~~~C~~C~~~i~~--~~ri~C~~C~dfdLC~~CF~~G~ 81 (525)
....|..|+..+.+ .-.++|..|. +..|..|.....
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~-~~~h~~C~~~~~ 393 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCR-APAHKECLGRVP 393 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTC-CEECGGGGGGSC
T ss_pred CCCCCccccchhceeCCCCCCCCCCc-CccchhhhhhCC
Confidence 34689999987742 3789999997 889999988654
No 165
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=21.16 E-value=1.2e+02 Score=25.87 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCC--------ChHHHHHHhCCCC----HHHHHHHHHhh
Q 009788 113 ILLLEGIEMYGLG--------NWAEIAEHVGTKT----KELCIEHYTNV 149 (525)
Q Consensus 113 l~LLeai~~~G~g--------nW~~Ia~~vgtkt----~~ec~~hy~~~ 149 (525)
..|..+|...| | .|.+||..+|--+ ....+.||.++
T Consensus 54 ~~Ly~~V~~~G-G~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 54 FRLYVCVKEIG-GLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp HHHHHHHHHHT-SHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 45666777666 4 7999999998533 45667778775
No 166
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=20.93 E-value=51 Score=26.26 Aligned_cols=56 Identities=7% Similarity=-0.046 Sum_probs=39.8
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHHhhhhccCchhHHHHHHHHHHCCCC
Q 009788 467 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 523 (525)
Q Consensus 467 C~~lrL~P~~YL~iK~~LirE~~~~G~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 523 (525)
+..+.|....|..+..++- ..-.++.++..+.-..+.++..-+.++.+-|.+.|||
T Consensus 5 ~~k~~l~~~~~~iL~~l~~-~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 5 RIKLLFKEKALEILMTIYY-ESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CHHHHSCHHHHHHHHHHHH-HHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCchhHHHHHHHHHH-ccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 4456666666666654432 1112224777888888899999999999999999998
No 167
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=20.53 E-value=1e+02 Score=26.21 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=35.9
Q ss_pred CCCchHHHHHHHHHHHHHHh-CCCCCHHHHhhhhc----cCchhHHHHHHHHHHCCCCC
Q 009788 471 RLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 524 (525)
Q Consensus 471 rL~P~~YL~iK~~LirE~~~-~G~lkk~dA~~l~k----iD~~K~~rIydFlv~~Gwi~ 524 (525)
+|.|..|..++-+. . +|.++..+....+. ++..-+.++.+-|+++|||.
T Consensus 6 ~lt~~e~~vL~~L~-----~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~ 59 (138)
T 2g9w_A 6 RLGDLERAVMDHLW-----SRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVL 59 (138)
T ss_dssp GCCHHHHHHHHHHH-----TCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHHHHH-----hcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEE
Confidence 46666666554222 3 46777777766665 78999999999999999984
Done!