BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009790
         (525 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E7Z|A Chain A, Acetylene Hydratase From Pelobacter Acetylenicus
          Length = 727

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 316 ALDQHFKW-----LLQYRISPFFCRWGESMRVLTYTCPWP 350
            L++HF W     L+ YRISP    W E  +  TY    P
Sbjct: 503 GLEEHFPWKDRLELINYRISPTGMEWEEYQKQYTYMSKLP 542


>pdb|1M6J|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
           Entamoeba Histolytica
 pdb|1M6J|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
           Entamoeba Histolytica
          Length = 261

 Score = 29.3 bits (64), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 129 MLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYA-QPPGLYEGEIIITSK 187
           + ++V  ++GVP   +P    V QI  + GE     + + A  A    G Y GE+ +   
Sbjct: 36  LAKKVEVIVGVPFIYIP---KVQQI--LAGEANGANILVSAENAWTKSGAYTGEVHVGML 90

Query: 188 ADTELSSQCLGKGEKHRLFME 208
            D ++    LG  E+ ++F E
Sbjct: 91  VDCQVPYVILGHSERRQIFHE 111


>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
          Length = 654

 Score = 28.9 bits (63), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 14/149 (9%)

Query: 155 LIPGETTAVWVSIDAPYAQPPGLYEGEIIITSKADTELSSQCLGKGEKHRLFMELRNCLD 214
            I G   A W   ++PYA  P  Y+ +  ++   D           EK   +  LRN + 
Sbjct: 285 FIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLT---------EK---YFALRNIIQ 332

Query: 215 NVEPIEGKPLHEVVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVRVKL 274
             E +   P+     +      TL ++       +    +GPI  +    ++ + V+   
Sbjct: 333 KFEKVPEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSL--YPLTFIQVKQHY 390

Query: 275 SLTVWDFILPATPSLPAVIGISDTVIEDR 303
              ++   LP   S PA +      + DR
Sbjct: 391 GFVLYRTTLPQDCSNPAPLSSPLNGVHDR 419


>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
          Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
          Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
          Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
          Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
          TricCCT DERIVED By A Combination Of Chemical
          Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
          TricCCT DERIVED By A Combination Of Chemical
          Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
          TricCCT DERIVED By A Combination Of Chemical
          Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
          TricCCT DERIVED By A Combination Of Chemical
          Crosslinking And Mass-Spectrometry, Xl- Ms
          Length = 528

 Score = 28.5 bits (62), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query: 58 MPSTANVGPQEMPRPLEPINLLAARNERESVQIALRPK 95
          +PS A    +E P+ +   N++AAR+  ++++ +L PK
Sbjct: 5  VPSNATFKNKEKPQEVRKANIIAARSVADAIRTSLGPK 42


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,742,655
Number of Sequences: 62578
Number of extensions: 668324
Number of successful extensions: 1255
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1254
Number of HSP's gapped (non-prelim): 4
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)