BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009791
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 33/194 (17%)
Query: 209 FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL 268
F +A + K ++E +D F++ E Y +G +G LL GPPGTGK+ L A+A
Sbjct: 10 FKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68
Query: 269 KFDVFDLQLGNVTR------DSDLRTLLLSTGNR--SILVIEDIDCSVDLPDRRNGNENN 320
F + + S +R L + + SI+ I++ID
Sbjct: 69 HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEID--------------- 113
Query: 321 ADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERL 380
A +S+AAG V N + TL+ LL +DG S I++ TN E L
Sbjct: 114 AIGKSRAAGGVVSGND--------EREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEIL 164
Query: 381 DPALLRPGRMDMHI 394
DPAL+RPGR D +
Sbjct: 165 DPALMRPGRFDRQV 178
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 40/238 (16%)
Query: 172 AKDMKDKTRVL---KMYTLHRVPDYDA---IRWDSVKLEHPATFDTLAMEPDLKATIMED 225
KD+K RV Y LH+V + A + V+ +T+D + I E
Sbjct: 104 VKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEV 163
Query: 226 LDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANY--LKF------DVFDLQL 277
++ V+ E ++ +G A +G +LYGPPGTGK+ L A+A++ KF ++ +
Sbjct: 164 IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYI 223
Query: 278 GNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKT 337
G +R ++ SI+ +++ID + ++ G+
Sbjct: 224 GEGSRMVRELFVMAREHAPSIIFMDEID---------------SIGSTRVEGS------- 261
Query: 338 DFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIH 395
GG + T+ LLN +DG +S + I+ TN + LDPALLRPGR+D I
Sbjct: 262 --GGGDSEVQRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGRIDRKIE 315
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 83/202 (41%), Gaps = 49/202 (24%)
Query: 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANY 267
TF +A + K + E L ++R ++++G +G L+ GPPGTGK+ L A+A
Sbjct: 10 TFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 268 LKFDVFDLQLGNVTRDSDLRTLLLSTGNR--------------SILVIEDIDCSVDLPDR 313
K F + SD + + G I+ I++ID
Sbjct: 69 AKVPFFTIS------GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEID-------- 114
Query: 314 RNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVF- 372
A R+ GG + TL+ +L +DG G+E IIV
Sbjct: 115 ----------------AVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---GNEGIIVIA 155
Query: 373 TTNHKERLDPALLRPGRMDMHI 394
TN + LDPALLRPGR D +
Sbjct: 156 ATNRPDVLDPALLRPGRFDRQV 177
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 223 MEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR 282
++++ F++ + R+G +G LL GPPGTGK+ L A+A F +
Sbjct: 28 LKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS------ 81
Query: 283 DSDLRTLLLSTGNRSILVIEDI--DCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFA 340
SD L + G + D+ P +E +A + + AG
Sbjct: 82 GSDFVELFVGVGAAR---VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG---------LG 129
Query: 341 GGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHI 394
GG + TL+ LL +DG S G I++ TN + LDPALLRPGR D I
Sbjct: 130 GGHDEREQTLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 34/185 (18%)
Query: 219 KATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ-- 276
K I E ++ + + + Y+++G RG LLYGPPGTGK+ LV A+AN K +
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240
Query: 277 ------LGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGA 330
LG R L SI+ I+++D + +R DAQ+
Sbjct: 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDS---IATKR------FDAQT----- 286
Query: 331 AVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRM 390
G + L LL +DG S + ++ TN + LDPALLRPGR+
Sbjct: 287 ----------GSDREVQRILIELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRL 334
Query: 391 DMHIH 395
D I
Sbjct: 335 DRKIE 339
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 38/183 (20%)
Query: 222 IMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMAN-----YLKF---DVF 273
I E ++ + E Y+ +G +G +LYG PGTGK+ L A+AN +L+ ++
Sbjct: 194 IKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253
Query: 274 DLQLGNVTRDSDLRTLLLSTGNR--SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331
LG+ R R + G SI+ I++ID A
Sbjct: 254 QKYLGDGPRLC--RQIFKVAGENAPSIVFIDEID------------------------AI 287
Query: 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 391
K +GG+ + T+ LLN +DG + GD ++I+ TN E LDPAL+RPGR+D
Sbjct: 288 GTKRYDSNSGGEREIQRTMLELLNQLDG-FDDRGDVKVIM-ATNKIETLDPALIRPGRID 345
Query: 392 MHI 394
I
Sbjct: 346 RKI 348
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 34/197 (17%)
Query: 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANY 267
TFD + + + E ++ ++ E ++RVG +G LLYGPPGTGK+ L A+A
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 268 LKFD--------VFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNEN 319
+ + + D +G R I+ ++++D + RR
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDA---IGGRRFSEGT 295
Query: 320 NADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKER 379
+AD + + TL LL +DG + + G +II+ TN +
Sbjct: 296 SADREIQR---------------------TLMELLTQMDG-FDNLGQTKIIM-ATNRPDT 332
Query: 380 LDPALLRPGRMDMHIHM 396
LDPALLRPGR+D + +
Sbjct: 333 LDPALLRPGRLDRKVEI 349
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 223 MEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR 282
++++ F++ + R+G +G LL GPPGTG + L A+A F +
Sbjct: 28 LKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHIS------ 81
Query: 283 DSDLRTLLLSTGNRSILVIEDI--DCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFA 340
SD L + G + D+ P +E +A + + AG
Sbjct: 82 GSDFVELFVGVGAAR---VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG---------LG 129
Query: 341 GGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHI 394
GG + TL+ LL +DG S G I++ TN + LDPALLRPGR D I
Sbjct: 130 GGHDEREQTLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 36/184 (19%)
Query: 222 IMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMAN-----YLKFDVFDLQ 276
I E ++ ++ E +++VG +G LLYGPPGTGK+ L A+A +++ +L
Sbjct: 29 IREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88
Query: 277 LGNVTRDSDLRTLLLSTGNR---SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333
+ + L + SI+ I++ID A+
Sbjct: 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEID-------------------------AIA 123
Query: 334 KNKTD-FAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDM 392
+TD GG + TL LL +DG + + GD +II TN + LDPA+LRPGR D
Sbjct: 124 AKRTDALTGGDREVQRTLMQLLAEMDG-FDARGDVKII-GATNRPDILDPAILRPGRFDR 181
Query: 393 HIHM 396
I +
Sbjct: 182 IIEV 185
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 44/181 (24%)
Query: 229 FVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF--------DVFDLQLG-N 279
F++ + +G +G LL GPPG GK+ L A+A + D ++ +G
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 280 VTRDSDLRTLLLSTGNR---SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNK 336
R D L T R I+ I++ID A RK
Sbjct: 94 AARVRD----LFETAKRHAPCIVFIDEID------------------------AVGRKRG 125
Query: 337 TDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVF-TTNHKERLDPALLRPGRMDMHIH 395
+ GG + TL+ LL +DG D I+V TN + LDPALLRPGR D I
Sbjct: 126 SGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIA 182
Query: 396 M 396
+
Sbjct: 183 I 183
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 44/181 (24%)
Query: 229 FVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF--------DVFDLQLG-N 279
F++ + +G +G LL GPPG GK+ L A+A + D ++ +G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 280 VTRDSDLRTLLLSTGNR---SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNK 336
R D L T R I+ I++ID A RK
Sbjct: 118 AARVRD----LFETAKRHAPCIVFIDEID------------------------AVGRKRG 149
Query: 337 TDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVF-TTNHKERLDPALLRPGRMDMHIH 395
+ GG + TL+ LL +DG D I+V TN + LDPALLRPGR D I
Sbjct: 150 SGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 396 M 396
+
Sbjct: 207 I 207
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 42/178 (23%)
Query: 229 FVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF--------DVFDLQLG-N 279
F++ + +G +G LL GPPG GK+ L A+A + D ++ +G
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 280 VTRDSDLRTLLLSTGNR---SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNK 336
R D L T R I+ I++ID A RK
Sbjct: 109 AARVRD----LFETAKRHAPCIVFIDEID------------------------AVGRKRG 140
Query: 337 TDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHI 394
+ GG + TL+ LL +DG +++ TN + LDPALLRPGR D I
Sbjct: 141 SGVGGGNDEREQTLNQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQI 196
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 73/179 (40%), Gaps = 44/179 (24%)
Query: 229 FVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF--------DVFDLQLG-N 279
F++ + +G +G LL GPPG GK+ L A+A + D ++ +G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 280 VTRDSDLRTLLLSTGNR---SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNK 336
R D L T R I+ I++ID A RK
Sbjct: 118 AARVRD----LFETAKRHAPCIVFIDEID------------------------AVGRKRG 149
Query: 337 TDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVF-TTNHKERLDPALLRPGRMDMHI 394
+ GG + TL+ LL +DG D I+V TN + LDPALLRPGR D I
Sbjct: 150 SGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQI 205
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
Query: 234 EFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMAN--------YLKFDVFDLQLGNVTRDSD 285
E + +G +G LLYGPPGTGK+ A+AN + ++ +G R
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 286 LRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQ 345
+ T I+ ++ID A G A D AGG +
Sbjct: 293 ELFEMARTKKACIIFFDEID---------------------AVGGA---RFDDGAGGDNE 328
Query: 346 HMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMS 397
T+ L+ +DG + G+ +++ F TN LDPALLRPGR+D + S
Sbjct: 329 VQRTMLELITQLDG-FDPRGNIKVM-FATNRPNTLDPALLRPGRIDRKVEFS 378
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 36/198 (18%)
Query: 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANY 267
+F +A + K + E +D +++ E + ++G +G LL GPPG GK+ L A+A
Sbjct: 4 SFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 268 LKFDVFDLQLGNVTR------DSDLRTLLLSTGNRS--ILVIEDIDCSVDLPDRRNGNEN 319
+ + + +R+L R+ I+ I++ID
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEID-------------- 108
Query: 320 NADAQSKAAGAAVRKNKTDFAG-GKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE 378
A +K T +G + TL+ LL +DG+ ++ D I++ +TN +
Sbjct: 109 ----------AVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT--DHVIVLASTNRAD 156
Query: 379 RLDPALLRPGRMDMHIHM 396
LD AL+RPGR+D H+ +
Sbjct: 157 ILDGALMRPGRLDRHVFI 174
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 41/182 (22%)
Query: 230 VRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANY--LKF------DVFDLQLGNVT 281
VR + +K +G G LL GPPG GK+ L A+AN L F ++ ++ +G
Sbjct: 30 VRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESE 89
Query: 282 RDSDLRTLLLSTGNRSILVI--EDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDF 339
R +R + N + VI +++D L RR+ E GA+VR
Sbjct: 90 R--AVRQVFQRAKNSAPCVIFFDEVDA---LCPRRSDRET---------GASVR------ 129
Query: 340 AGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYC 399
++ LL +DGL + + I+ TN + +DPA+LRPGR+D + +
Sbjct: 130 ---------VVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLP 178
Query: 400 GP 401
P
Sbjct: 179 PP 180
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 59/219 (26%)
Query: 206 PATFDTL--AMEPDLKAT---------------IMEDLDRFVRRKEFYKRVGRAWKRGYL 248
P+ FD+ AME D K T ++E + ++R + +K +G +G L
Sbjct: 160 PSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGAL 219
Query: 249 LYGPPGTGKSSLVAAMA-----NYLKF---DVFDLQLG---NVTRDSDLRTLLLSTGNRS 297
+YGPPGTGK+ L A A +LK + + +G + RD+ L +
Sbjct: 220 MYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDA---FALAKEKAPT 276
Query: 298 ILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFI 357
I+ I+++D + +R +E + D + + T+ LLN +
Sbjct: 277 IIFIDELDA---IGTKRFDSEKSGDREVQR---------------------TMLELLNQL 312
Query: 358 DGLWSSCGDERIIVFT-TNHKERLDPALLRPGRMDMHIH 395
DG S D+R+ V TN + LDPALLR GR+D I
Sbjct: 313 DGFSS---DDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 37/185 (20%)
Query: 220 ATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN 279
A I E ++ +R +K +G RG LLYGPPGTGK+ + A+AN F +
Sbjct: 214 AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 273
Query: 280 VT------RDSDLRTLLLSTGNR--SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331
+ +S+LR +I+ I+++D A + K G
Sbjct: 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI-------------APKREKTHGEV 320
Query: 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 391
R+ +S LL +DGL I++ TN +DPAL R GR D
Sbjct: 321 ERR--------------IVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFD 364
Query: 392 MHIHM 396
+ +
Sbjct: 365 REVDI 369
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 19/202 (9%)
Query: 195 AIRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPG 254
A+R V++ T++ + D+K + E + V + + + G +G L YGPPG
Sbjct: 463 ALRETVVEVPQ-VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521
Query: 255 TGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRR 314
GK+ L A+AN + + + + +L T+ ++ I D P
Sbjct: 522 CGKTLLAKAIANECQANFISI------KGPELLTMWFGESEANVREIFD-KARQAAPCVL 574
Query: 315 NGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTT 374
+E ++ A+++ D ++ +L +DG+ S I+ T
Sbjct: 575 FFDELDSIAKARGGNIGDGGGAAD---------RVINQILTEMDGM--STKKNVFIIGAT 623
Query: 375 NHKERLDPALLRPGRMDMHIHM 396
N + +DPA+LRPGR+D I++
Sbjct: 624 NRPDIIDPAILRPGRLDQLIYI 645
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 37/186 (19%)
Query: 220 ATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN 279
A I E ++ +R +K +G RG LLYGPPGTGK+ + A+AN F +
Sbjct: 214 AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 273
Query: 280 VT------RDSDLRTLLLSTGNR--SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331
+ +S+LR +I+ I+++D A + K G
Sbjct: 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI-------------APKREKTHGEV 320
Query: 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 391
R+ +S LL +DGL I++ TN +DPAL R GR D
Sbjct: 321 ERR--------------IVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFD 364
Query: 392 MHIHMS 397
+ +
Sbjct: 365 REVDIG 370
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 19/202 (9%)
Query: 195 AIRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPG 254
A+R V++ T++ + D+K + E + V + + + G +G L YGPPG
Sbjct: 463 ALRETVVEVPQ-VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521
Query: 255 TGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRR 314
GK+ L A+AN + + + + +L T+ ++ I D P
Sbjct: 522 CGKTLLAKAIANECQANFISI------KGPELLTMWFGESEANVREIFD-KARQAAPCVL 574
Query: 315 NGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTT 374
+E ++ A+++ D ++ +L +DG+ S I+ T
Sbjct: 575 FFDELDSIAKARGGNIGDGGGAAD---------RVINQILTEMDGM--STKKNVFIIGAT 623
Query: 375 NHKERLDPALLRPGRMDMHIHM 396
N + +DPA+LRPGR+D I++
Sbjct: 624 NRPDIIDPAILRPGRLDQLIYI 645
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 37/186 (19%)
Query: 220 ATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN 279
A I E ++ +R +K +G RG LLYGPPGTGK+ + A+AN F +
Sbjct: 214 AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 273
Query: 280 VT------RDSDLRTLLLSTGNR--SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331
+ +S+LR +I+ I+++D A + K G
Sbjct: 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI-------------APKREKTHGEV 320
Query: 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 391
R+ +S LL +DGL I++ TN +DPAL R GR D
Sbjct: 321 ERR--------------IVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFD 364
Query: 392 MHIHMS 397
+ +
Sbjct: 365 REVDIG 370
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 37/186 (19%)
Query: 220 ATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN 279
A I E ++ +R +K +G RG LLYGPPGTGK+ + A+AN F +
Sbjct: 214 AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 273
Query: 280 VT------RDSDLRTLLLSTGNR--SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331
+ +S+LR +I+ I+++D A + K G
Sbjct: 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI-------------APKREKTHGEV 320
Query: 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 391
R+ +S LL +DGL I++ TN +DPAL R GR D
Sbjct: 321 ERR--------------IVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFD 364
Query: 392 MHIHMS 397
+ +
Sbjct: 365 REVDIG 370
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 37/186 (19%)
Query: 220 ATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN 279
A I E ++ +R +K +G RG LLYGPPGTGK+ + A+AN F +
Sbjct: 214 AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 273
Query: 280 VT------RDSDLRTLLLSTGNR--SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331
+ +S+LR +I+ I+++D A + K G
Sbjct: 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI-------------APKREKTHGEV 320
Query: 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 391
R+ +S LL +DGL I++ TN +DPAL R GR D
Sbjct: 321 ERR--------------IVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFD 364
Query: 392 MHIHMS 397
+ +
Sbjct: 365 REVDIG 370
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 37/186 (19%)
Query: 220 ATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN 279
A I E ++ +R +K +G RG LLYGPPGTGK+ + A+AN F +
Sbjct: 214 AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 273
Query: 280 VT------RDSDLRTLLLSTGNR--SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331
+ +S+LR +I+ I+++D A + K G
Sbjct: 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI-------------APKREKTHGEV 320
Query: 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 391
R+ +S LL +DGL I++ TN +DPAL R GR D
Sbjct: 321 ERR--------------IVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFD 364
Query: 392 MHIHMS 397
+ +
Sbjct: 365 REVDIG 370
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 209 FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL 268
FD +A + K + E + R E + + RA RG LL+GPPG GK+ L A+A
Sbjct: 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAES 172
Query: 269 KFDVFDLQLGNVT-----RDSDLRTLLLSTGNR---SILVIEDIDCSVDLPDRRNGNENN 320
F++ ++T L L + SI+ I+ +D L +RR G +
Sbjct: 173 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSL--LCERREGEHD- 229
Query: 321 ADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVF-TTNHKER 379
A R+ KT+F L+ F DG+ S GD+R++V TN +
Sbjct: 230 ----------ASRRLKTEF-------------LIEF-DGVQ-SAGDDRVLVMGATNRPQE 264
Query: 380 LDPALLR 386
LD A+LR
Sbjct: 265 LDEAVLR 271
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 19/202 (9%)
Query: 195 AIRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPG 254
A+R V++ T++ + D+K + E + V + + + G +G L YGPPG
Sbjct: 1 ALRETVVEVPQ-VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 59
Query: 255 TGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRR 314
GK+ L A+AN + + + + +L T+ ++ I D P
Sbjct: 60 CGKTLLAKAIANECQANFISI------KGPELLTMWFGESEANVREIFD-KARQAAPCVL 112
Query: 315 NGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTT 374
+E ++ A+++ D ++ +L +DG+ S I+ T
Sbjct: 113 FFDELDSIAKARGGNIGDGGGAAD---------RVINQILTEMDGM--STKKNVFIIGAT 161
Query: 375 NHKERLDPALLRPGRMDMHIHM 396
N + +DPA+LRPGR+D I++
Sbjct: 162 NRPDIIDPAILRPGRLDQLIYI 183
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 39/180 (21%)
Query: 245 RGYLLYGPPGTGKSSL---VAAMANYLKF------DVFDLQLGNVTRDSDLRTLLLSTGN 295
RG LL+GPPGTGKS L VA AN F D+ LG + L
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 296 RSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355
SI+ I++ID L R+ NE+ A R+ KT+F ++ + G+
Sbjct: 106 PSIIFIDEIDS---LCGSRSENESE----------AARRIKTEF-------LVQMQGVGV 145
Query: 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGIT 415
DG+ +++ TN LD A+ R R + I++ P+ + +LG T
Sbjct: 146 DNDGI--------LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTT 195
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 36/189 (19%)
Query: 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMA 265
P ++ +A KATI E + + R + + + R +G LL+GPPGTGK+ + +A
Sbjct: 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIA 138
Query: 266 NYLKFDVFDLQLGNVTR------DSDLRTL--LLSTGNRSILVIEDIDCSVDLPDRRNGN 317
+ F + ++T + +R L + +++ I++ID L +R
Sbjct: 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEID---SLLSQRGDG 195
Query: 318 ENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHK 377
E+ + R+ KT+F L +DG +S D ++V TN
Sbjct: 196 EHESS----------RRIKTEF--------------LVQLDGATTSSEDRILVVGATNRP 231
Query: 378 ERLDPALLR 386
+ +D A R
Sbjct: 232 QEIDEAARR 240
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 234 EFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMAN-----------YLKFDVFDLQLGNVTR 282
+F ++ A ++G LYG G GKS L+AAMA+ L F F + + N
Sbjct: 142 DFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAIS 201
Query: 283 DSDLRTLLLSTGNRSILVIEDI 304
+ ++ + + N +L+++DI
Sbjct: 202 NGSVKEEIDAVKNVPVLILDDI 223
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 38/166 (22%)
Query: 241 RAWKRGYLLYGPPGTGKSSLVAAM-----ANYLKFDVFDLQLGNVTRDSDLRTLLLSTGN 295
RA +G LL+GPPG GK+ L A+ A +L L V L L +
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 296 R---SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSG 352
SI+ I+++D + +S + A R+ KT+F
Sbjct: 111 HMQPSIIFIDEVD-------------SLLSERSSSEHEASRRLKTEF------------- 144
Query: 353 LLNFIDGLWSSCGDERIIVF-TTNHKERLDPALLRPGRMDMHIHMS 397
L+ F DGL + +RI+V TN + LD A LR R +++S
Sbjct: 145 LVEF-DGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVS 187
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 39/161 (24%)
Query: 245 RGYLLYGPPGTGKSSL---VAAMANYLKF------DVFDLQLGNVTRDSDLRTLLLSTGN 295
RG LL+GPPGTGKS L VA AN F D+ LG + L
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 296 RSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355
SI+ I++ID L R+ NE+ A R+ KT+F ++ + G+
Sbjct: 228 PSIIFIDEIDS---LCGSRSENESE----------AARRIKTEF-------LVQMQGVGV 267
Query: 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHM 396
DG+ +++ TN LD A+ R R + I++
Sbjct: 268 DNDGI--------LVLGATNIPWVLDSAIRR--RFEKRIYI 298
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 16/74 (21%)
Query: 208 TFDTLA--MEPDLKATIMEDLDRFVRRKEFY---KRVGRAWKRGYL----LYGPPGTGKS 258
TF LA M P E+L +++ ++ K + RA + G+L L+GPPGTGK+
Sbjct: 12 TFQPLAARMRP-------ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKT 64
Query: 259 SLVAAMANYLKFDV 272
+L +A Y DV
Sbjct: 65 TLAEVIARYANADV 78
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 249 LYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLR 287
L GPPG GK+SL ++A L + LG V +S++R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 234 EFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL 268
E +KRV + L+ GP G+GKS+ +AAM +YL
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYL 147
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 246 GYLLYGPPGTGKSSLVAAMAN 266
G LLYGPPGTGKS L A+A
Sbjct: 53 GILLYGPPGTGKSYLAKAVAT 73
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 213 AMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLV-AAMANYLKFD 271
M PD+ ++ +D K FY + KRG +L GPPG+GK+ ++ A+ N +D
Sbjct: 1022 VMRPDI---VIPTIDTIKHEKIFYDLLNS--KRGIILCGPPGSGKTMIMNNALRNSSLYD 1076
Query: 272 VFDLQLGNVTRDSDLRTLL 290
V + N ++D+ +L
Sbjct: 1077 VVGI---NFSKDTTTEHIL 1092
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275
G LLYGPPGTGKS L A+A F +
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSV 115
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 213 AMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLV-AAMANYLKFD 271
M PD+ ++ +D K FY + KRG +L GPPG+GK+ ++ A+ N +D
Sbjct: 1241 VMRPDI---VIPTIDTIKHEKIFYDLLNS--KRGIILCGPPGSGKTMIMNNALRNSSLYD 1295
Query: 272 VFDLQLGNVTRDSDLRTLL 290
V + N ++D+ +L
Sbjct: 1296 VVGI---NFSKDTTTEHIL 1311
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 246 GYLLYGPPGTGKSSLVAAMAN 266
G LLYGPPGTGKS L A+A
Sbjct: 62 GILLYGPPGTGKSYLAKAVAT 82
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 246 GYLLYGPPGTGKSSLVAAMA 265
G LLYGPPGTGKS L A+A
Sbjct: 71 GILLYGPPGTGKSYLAKAVA 90
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 208 TFDTLAMEPDLKATIMED-LDRFVRRKEFYKRV----GRAWKRGYLLYGPPGTGKSSLVA 262
T D+LA DL A ED LD + R + +RV R K +L G PG GK+++
Sbjct: 162 TLDSLAR--DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219
Query: 263 AMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNR 296
+A + + ++ + RD + TL + T R
Sbjct: 220 GLAQQ----IINNEVPEILRDKRVMTLDMGTKYR 249
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 224 EDLDRFVRRKEFYKRVGRAWK----RG-----YLLYGPPGTGKSSLVAAMANYLKFDVFD 274
+ LD F+ ++ K++ A + RG LL GPPG GK++L +A+ L+ ++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81
Query: 275 LQLGNVTRDSDLRTLLLSTGNRSILVIEDI 304
+ + D+ +L S +L I++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 208 TFDTLAMEPDLKATIMED-LDRFVRRKEFYKRV----GRAWKRGYLLYGPPGTGKSSLVA 262
T D+LA DL A ED LD + R + +RV R K +L G PG GK+++
Sbjct: 162 TLDSLAR--DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219
Query: 263 AMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNR 296
+A + + ++ + RD + TL + T R
Sbjct: 220 GLAQ----QIINNEVPEILRDKRVMTLDMGTKYR 249
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 224 EDLDRFVRRKEFYKRVGRAWK----RG-----YLLYGPPGTGKSSLVAAMANYLKFDVFD 274
+ LD F+ ++ K++ A + RG LL GPPG GK++L +A+ L+ ++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81
Query: 275 LQLGNVTRDSDLRTLLLSTGNRSILVIEDI 304
+ + D+ +L S +L I++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 224 EDLDRFVRRKEFYKRVGRAWK----RG-----YLLYGPPGTGKSSLVAAMANYLKFDVFD 274
+ LD F+ ++ K++ A + RG LL GPPG GK++L +A+ L+ ++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81
Query: 275 LQLGNVTRDSDLRTLLLSTGNRSILVIEDI 304
+ + D+ +L S +L I++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 224 EDLDRFVRRKEFYKRVGRAWK----RG-----YLLYGPPGTGKSSLVAAMANYLKFDVFD 274
+ LD F+ ++ K++ A + RG LL GPPG GK++L +A+ L+ ++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81
Query: 275 LQLGNVTRDSDLRTLLLSTGNRSILVIEDI 304
+ + D+ +L S +L I++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 224 EDLDRFVRRKEFYKRVGRAWK----RG-----YLLYGPPGTGKSSLVAAMANYLKFDVFD 274
+ LD F+ ++ K++ A + RG LL GPPG GK++L +A+ L+ ++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81
Query: 275 LQLGNVTRDSDLRTLLLSTGNRSILVIEDI 304
+ + D+ +L S +L I++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 232 RKEFYKRVGRAWK---RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRT 288
+K +K G+ R +LYGPPG GK++ +A L +D+ + SD+R+
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE------QNASDVRS 115
Query: 289 -LLLSTGNRSIL 299
LL+ G ++ L
Sbjct: 116 KTLLNAGVKNAL 127
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 20/182 (10%)
Query: 202 KLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRG----YLLYGPPGTGK 257
K+ A +LA +P ++ ++LD + + + K L YGPPGTGK
Sbjct: 12 KISKLAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGK 71
Query: 258 SSLVAAM-----------ANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDC 306
+S + A+ + L+ + D + ++ R+ L+ S +E+ C
Sbjct: 72 TSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPC 131
Query: 307 SVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGD 366
P + + AD+ + A +A+R+ ++G + L + + ID L S C
Sbjct: 132 ----PPYKIIILDEADSMTADAQSALRRTMETYSGVT-RFCLICNYVTRIIDPLASQCSK 186
Query: 367 ER 368
R
Sbjct: 187 FR 188
>pdb|3GTU|B Chain B, Ligand-Free Heterodimeric Human Glutathione S-Transferase
M2-3 (Ec 2.5.1.18), Monoclinic Crystal Form
pdb|3GTU|D Chain D, Ligand-Free Heterodimeric Human Glutathione S-Transferase
M2-3 (Ec 2.5.1.18), Monoclinic Crystal Form
Length = 224
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 159 MVLNSY----LPHVIELAKDMKDKTRVLKMYTLHRVPDYDAIRWDSVKLEHPATFDTLAM 214
MVL + L H I L + D + K YT PDYD +W VK + F L
Sbjct: 6 MVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPY 65
Query: 215 EPDLKATIMED--LDRFVRRK 233
D K I + + R++ RK
Sbjct: 66 LLDGKNKITQSNAILRYIARK 86
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 248 LLYGPPGTGKSSLVAAMA 265
L YGPPGTGK+S + A+A
Sbjct: 50 LFYGPPGTGKTSTIVALA 67
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 224 EDLDRFVRRKEFYKRVGRAWK----RG-----YLLYGPPGTGKSSLVAAMANYLKFDVFD 274
+ LD F+ ++ K++ A + RG LL GPPG G+++L +A+ L+ ++
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTNIHV 81
Query: 275 LQLGNVTRDSDLRTLLLSTGNRSILVIEDI 304
+ + D+ +L S +L I++I
Sbjct: 82 TSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 245 RGYLLYGPPGTGKSSLVAAMANYLKFDV 272
R LL GPPGTGK++L A+A L V
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 245 RGYLLYGPPGTGKSSLVAAMANYLKFDV 272
R LL GPPGTGK++L A+A L V
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 203 LEHPATFDTLAM-----EPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGK 257
L P T +T A+ P + I LD VR VGR + G L+ G GK
Sbjct: 113 LPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG--LFAGSGVGK 170
Query: 258 SSLVAAMANYLKFDVFDLQL 277
S L+ MA Y + DV + L
Sbjct: 171 SVLLGMMARYTRADVIVVGL 190
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274
KR LL G PGTGKS L AMA L + +
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLE 90
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 248 LLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDID 305
+L G GTGKS AA + L+ F+ +LG+ T S GNR I++I+ D
Sbjct: 26 ILVGKTGTGKS---AAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPD 80
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 248 LLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDID 305
+L G GTGKS AA + L+ F+ +LG+ T S GNR I++I+ D
Sbjct: 26 ILVGKTGTGKS---AAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPD 80
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 248 LLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDID 305
+L G GTGKS AA + L+ F+ +LG+ T S GNR I++I+ D
Sbjct: 6 ILVGKTGTGKS---AAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPD 60
>pdb|2R61|A Chain A, Crystal Structure Of The Staphylococcal Superantigen-Like
Protein Ssl5 In Complex With Sialyl-Lewis X At Ph 7.4
Length = 208
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 44 CFAFRYFFKPRSKELTLV--IEDSNGIARNQIFEAAEAYLSAKI-GPSIERLKICKTPNE 100
F R ++ SKEL V S G IF+A +A+ +I G IERLK K P
Sbjct: 18 IFDLRDYYSGASKELKNVTGYRYSKGGKHYLIFDAHQAFTRIQIFGKDIERLKARKNPGL 77
Query: 101 KVITIRLEKNEQ-IIDSFRGV 120
+ ++ +N + S+ GV
Sbjct: 78 DIFVVKEAENRNGTVFSYGGV 98
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 248 LLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDID 305
+L G GTGKS AA + L+ F+ +LG+ T S GNR I++I+ D
Sbjct: 9 ILVGKTGTGKS---AAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPD 63
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 248 LLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLL---LSTGNRSILVIEDI 304
LL+GPPG GK++L +A+ L ++ + + DL +L L G+ IL I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGD--ILFIDEI 99
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 248 LLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLL---LSTGNRSILVIEDI 304
LL+GPPG GK++L +A+ L ++ + + DL +L L G+ IL I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGD--ILFIDEI 99
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 226 LDRFVRRKEFYKRVGRAWKRG---YLLY-GPPGTGKSSLVAAMA----------NYLKFD 271
LD V ++ KR+ K G +LL+ GPPG GK++ A+A N+L+ +
Sbjct: 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN 83
Query: 272 VFDLQLGNVTRD 283
D + NV R+
Sbjct: 84 ASDERGINVIRE 95
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 248 LLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLL---LSTGNRSILVIEDI 304
LL+GPPG GK++L +A+ L ++ + + DL +L L G+ IL I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGD--ILFIDEI 99
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274
A KR L GP G GKS++ +A L + +D
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|2DC5|A Chain A, Crystal Structure Of Mouse Glutathione S-Transferase, Mu7
(Gstm7) At 1.6 A Resolution
pdb|2DC5|B Chain B, Crystal Structure Of Mouse Glutathione S-Transferase, Mu7
(Gstm7) At 1.6 A Resolution
Length = 231
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 165 LPHVIELAKDMKDKTRVLKMYTLHRVPDYDAIRWDSVKLEHPATFDTLA--MEPDLKATI 222
L H I L + D + K YT PDYD +W + K + F L ++ K T
Sbjct: 20 LAHAIRLFLEYTDSSYEEKRYTXGDAPDYDQSQWLNEKFKLGLDFPNLPYLIDGSHKITQ 79
Query: 223 MEDLDRFVRRK 233
+ R++ RK
Sbjct: 80 SNAILRYLGRK 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,770,569
Number of Sequences: 62578
Number of extensions: 599711
Number of successful extensions: 1822
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1730
Number of HSP's gapped (non-prelim): 101
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)