Query 009791
Match_columns 525
No_of_seqs 447 out of 3643
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 17:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 3E-100 6E-105 781.4 39.1 435 12-469 2-440 (457)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 2.1E-45 4.5E-50 384.2 19.7 268 207-504 187-534 (802)
3 COG1222 RPT1 ATP-dependent 26S 100.0 5.2E-44 1.1E-48 356.1 19.3 236 204-467 145-396 (406)
4 KOG0730 AAA+-type ATPase [Post 100.0 3.2E-40 6.9E-45 350.1 18.5 233 204-467 428-678 (693)
5 KOG0734 AAA+-type ATPase conta 100.0 1E-38 2.2E-43 329.5 17.4 228 207-466 301-544 (752)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 3.3E-38 7.2E-43 330.3 18.6 211 205-444 506-727 (802)
7 KOG0730 AAA+-type ATPase [Post 100.0 5.9E-38 1.3E-42 332.9 18.6 266 205-504 180-457 (693)
8 KOG0731 AAA+-type ATPase conta 100.0 2.2E-36 4.8E-41 329.7 21.6 236 204-466 305-556 (774)
9 KOG0736 Peroxisome assembly fa 100.0 3E-35 6.4E-40 314.9 17.1 211 206-444 668-889 (953)
10 KOG0726 26S proteasome regulat 100.0 1.7E-35 3.7E-40 286.8 10.8 236 204-467 179-430 (440)
11 KOG0727 26S proteasome regulat 100.0 1E-34 2.2E-39 276.7 15.8 214 204-445 149-371 (408)
12 PTZ00454 26S protease regulato 100.0 7.7E-34 1.7E-38 298.4 21.4 234 204-465 139-388 (398)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 8.6E-34 1.9E-38 304.1 21.2 256 162-468 198-468 (489)
14 KOG0728 26S proteasome regulat 100.0 2.4E-34 5.1E-39 273.9 13.7 214 204-445 141-363 (404)
15 KOG0652 26S proteasome regulat 100.0 9.6E-34 2.1E-38 271.1 14.3 234 204-465 165-414 (424)
16 KOG0738 AAA+-type ATPase [Post 100.0 1.4E-33 3.1E-38 283.0 16.2 209 204-444 205-426 (491)
17 COG0465 HflB ATP-dependent Zn 100.0 3.5E-33 7.5E-38 300.2 17.2 232 205-465 145-392 (596)
18 PRK03992 proteasome-activating 100.0 2.8E-32 6.1E-37 287.3 21.8 239 204-470 125-379 (389)
19 TIGR01243 CDC48 AAA family ATP 100.0 1.9E-32 4.1E-37 310.4 22.0 269 205-504 173-476 (733)
20 KOG0735 AAA+-type ATPase [Post 100.0 3E-32 6.4E-37 289.5 20.6 232 197-464 652-894 (952)
21 TIGR03689 pup_AAA proteasome A 100.0 5.8E-32 1.2E-36 289.7 21.2 183 204-414 176-380 (512)
22 KOG0729 26S proteasome regulat 100.0 5.5E-32 1.2E-36 259.7 16.7 220 198-445 165-393 (435)
23 PTZ00361 26 proteosome regulat 100.0 7.8E-32 1.7E-36 285.1 19.2 234 204-465 177-426 (438)
24 TIGR01241 FtsH_fam ATP-depende 100.0 1.2E-31 2.6E-36 291.3 20.5 234 204-466 49-298 (495)
25 TIGR01243 CDC48 AAA family ATP 100.0 2.4E-31 5.1E-36 301.5 21.3 209 206-444 449-666 (733)
26 COG0464 SpoVK ATPases of the A 100.0 6E-31 1.3E-35 286.1 21.4 234 204-466 236-486 (494)
27 COG1223 Predicted ATPase (AAA+ 100.0 3.1E-31 6.6E-36 254.0 14.5 225 205-465 116-357 (368)
28 CHL00176 ftsH cell division pr 100.0 2.4E-30 5.3E-35 285.4 20.9 232 204-464 177-424 (638)
29 KOG0739 AAA+-type ATPase [Post 100.0 8.5E-31 1.8E-35 255.0 11.2 202 206-440 129-340 (439)
30 TIGR01242 26Sp45 26S proteasom 100.0 4.5E-29 9.7E-34 261.3 19.5 213 204-444 116-337 (364)
31 KOG0651 26S proteasome regulat 100.0 7E-30 1.5E-34 250.2 11.6 230 208-465 130-375 (388)
32 KOG0737 AAA+-type ATPase [Post 100.0 2.1E-29 4.6E-34 253.0 15.0 209 206-445 88-306 (386)
33 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.4E-29 5.2E-34 291.2 17.0 202 232-466 1618-1880(2281)
34 PLN00020 ribulose bisphosphate 100.0 3.2E-28 7E-33 246.9 20.6 168 234-432 138-328 (413)
35 PRK10733 hflB ATP-dependent me 100.0 2.3E-28 4.9E-33 272.2 20.0 233 205-466 147-395 (644)
36 KOG0732 AAA+-type ATPase conta 99.9 4.7E-27 1E-31 262.8 19.3 236 205-470 260-532 (1080)
37 KOG0740 AAA+-type ATPase [Post 99.9 8.6E-26 1.9E-30 234.4 13.2 210 205-445 148-366 (428)
38 KOG0741 AAA+-type ATPase [Post 99.9 3.3E-26 7.2E-31 237.0 9.7 209 232-467 244-494 (744)
39 PF14363 AAA_assoc: Domain ass 99.9 1.7E-25 3.7E-30 190.1 11.9 96 34-129 1-97 (98)
40 KOG0736 Peroxisome assembly fa 99.9 3.7E-24 7.9E-29 230.1 17.8 244 241-517 428-711 (953)
41 KOG0735 AAA+-type ATPase [Post 99.9 4.8E-23 1E-27 219.7 19.7 258 210-504 408-690 (952)
42 KOG0742 AAA+-type ATPase [Post 99.8 1E-20 2.2E-25 191.4 12.9 255 153-444 297-586 (630)
43 PF00004 AAA: ATPase family as 99.8 1.5E-20 3.3E-25 166.9 9.7 123 247-398 1-132 (132)
44 COG0464 SpoVK ATPases of the A 99.8 4.6E-18 1E-22 185.2 18.7 239 231-504 5-265 (494)
45 PF05496 RuvB_N: Holliday junc 99.8 1.3E-17 2.8E-22 159.9 19.1 190 204-443 18-222 (233)
46 KOG0744 AAA+-type ATPase [Post 99.8 4.1E-19 8.9E-24 175.5 8.0 179 207-412 139-340 (423)
47 PRK00080 ruvB Holliday junctio 99.8 2.2E-17 4.9E-22 170.6 17.8 192 204-444 19-224 (328)
48 TIGR00635 ruvB Holliday juncti 99.7 7.1E-17 1.5E-21 165.0 17.2 187 208-443 2-202 (305)
49 TIGR02881 spore_V_K stage V sp 99.7 1.2E-16 2.6E-21 160.0 16.8 169 209-415 5-194 (261)
50 CHL00181 cbbX CbbX; Provisiona 99.7 1.3E-16 2.9E-21 161.5 16.8 169 210-415 23-212 (287)
51 TIGR02880 cbbX_cfxQ probable R 99.7 2E-16 4.3E-21 160.2 15.3 168 211-415 23-211 (284)
52 TIGR00763 lon ATP-dependent pr 99.7 9.5E-16 2.1E-20 175.0 20.1 158 211-412 321-505 (775)
53 PF05673 DUF815: Protein of un 99.7 2E-15 4.3E-20 146.8 18.4 174 196-415 13-210 (249)
54 PRK04195 replication factor C 99.7 3.6E-15 7.8E-20 161.9 18.9 161 203-415 7-176 (482)
55 TIGR02639 ClpA ATP-dependent C 99.6 3.8E-16 8.2E-21 177.3 11.3 158 205-413 177-359 (731)
56 KOG2004 Mitochondrial ATP-depe 99.6 6.2E-15 1.3E-19 158.6 18.1 159 211-413 412-597 (906)
57 COG0466 Lon ATP-dependent Lon 99.6 4.5E-15 9.7E-20 160.5 17.1 159 211-413 324-509 (782)
58 PRK12323 DNA polymerase III su 99.6 3.3E-15 7.1E-20 162.6 15.7 180 204-441 10-224 (700)
59 PRK14962 DNA polymerase III su 99.6 7.3E-15 1.6E-19 158.0 18.2 153 204-413 8-190 (472)
60 PRK07003 DNA polymerase III su 99.6 9.6E-15 2.1E-19 160.8 18.9 155 204-415 10-194 (830)
61 PRK14956 DNA polymerase III su 99.6 8.6E-15 1.9E-19 155.7 17.3 155 204-415 12-196 (484)
62 COG2255 RuvB Holliday junction 99.6 1.6E-14 3.6E-19 141.3 16.8 189 204-437 20-218 (332)
63 PRK14960 DNA polymerase III su 99.6 1.4E-14 3E-19 158.2 17.4 155 204-415 9-193 (702)
64 PRK14961 DNA polymerase III su 99.6 2.7E-14 5.7E-19 149.7 18.8 155 204-415 10-194 (363)
65 PHA02544 44 clamp loader, smal 99.6 5.6E-14 1.2E-18 144.3 20.5 158 196-412 9-173 (316)
66 PRK06645 DNA polymerase III su 99.6 4.1E-14 8.8E-19 153.0 18.6 155 204-415 15-203 (507)
67 PRK14964 DNA polymerase III su 99.6 4.8E-14 1E-18 151.4 17.4 155 204-415 7-191 (491)
68 PLN03025 replication factor C 99.6 6.2E-14 1.3E-18 144.4 17.4 155 203-415 6-174 (319)
69 PRK14958 DNA polymerase III su 99.6 3.8E-14 8.2E-19 154.0 16.5 154 204-414 10-193 (509)
70 TIGR02397 dnaX_nterm DNA polym 99.6 7.3E-14 1.6E-18 145.6 17.9 178 204-439 8-215 (355)
71 PRK07994 DNA polymerase III su 99.6 7E-14 1.5E-18 154.3 18.3 153 204-413 10-192 (647)
72 PRK08691 DNA polymerase III su 99.6 5.9E-14 1.3E-18 154.5 16.5 155 204-415 10-194 (709)
73 PRK14949 DNA polymerase III su 99.6 8.6E-14 1.9E-18 156.1 18.0 154 204-414 10-193 (944)
74 PRK13342 recombination factor 99.6 8.9E-14 1.9E-18 148.2 17.5 149 204-413 6-165 (413)
75 PRK14963 DNA polymerase III su 99.6 1.7E-13 3.6E-18 148.7 19.3 155 204-415 8-191 (504)
76 PRK05563 DNA polymerase III su 99.5 1.8E-13 4E-18 150.5 19.3 154 204-414 10-193 (559)
77 COG2256 MGS1 ATPase related to 99.5 8.6E-14 1.9E-18 142.2 15.1 150 205-412 19-176 (436)
78 PRK14951 DNA polymerase III su 99.5 1.4E-13 3E-18 151.6 17.6 155 204-415 10-199 (618)
79 PRK07940 DNA polymerase III su 99.5 1.7E-13 3.7E-18 144.3 17.2 155 208-410 3-187 (394)
80 PRK14969 DNA polymerase III su 99.5 1.2E-13 2.6E-18 151.0 16.5 154 204-414 10-193 (527)
81 PRK07764 DNA polymerase III su 99.5 1.7E-13 3.8E-18 155.6 18.4 154 204-414 9-194 (824)
82 PRK14970 DNA polymerase III su 99.5 3.2E-13 7E-18 141.8 19.1 154 204-414 11-182 (367)
83 PRK07133 DNA polymerase III su 99.5 2E-13 4.4E-18 151.6 18.3 153 204-413 12-191 (725)
84 PRK05896 DNA polymerase III su 99.5 1.6E-13 3.4E-18 149.7 17.0 153 204-413 10-192 (605)
85 PRK14957 DNA polymerase III su 99.5 2.4E-13 5.1E-18 148.0 18.3 154 204-414 10-193 (546)
86 TIGR03345 VI_ClpV1 type VI sec 99.5 4.1E-14 9E-19 162.2 12.8 157 205-413 182-364 (852)
87 PRK11034 clpA ATP-dependent Cl 99.5 2.5E-14 5.3E-19 161.4 10.5 155 208-413 184-363 (758)
88 PRK14952 DNA polymerase III su 99.5 3E-13 6.6E-18 148.4 18.2 155 204-415 7-193 (584)
89 PRK06893 DNA replication initi 99.5 1.8E-13 4E-18 134.4 14.8 160 203-413 9-175 (229)
90 PRK10865 protein disaggregatio 99.5 4.9E-14 1.1E-18 162.0 12.3 158 205-414 173-356 (857)
91 TIGR03346 chaperone_ClpB ATP-d 99.5 7.9E-14 1.7E-18 160.7 14.0 202 205-465 168-398 (852)
92 PRK14959 DNA polymerase III su 99.5 3.6E-13 7.8E-18 147.6 17.2 154 204-414 10-193 (624)
93 PRK14965 DNA polymerase III su 99.5 4.4E-13 9.5E-18 148.1 16.7 154 204-414 10-193 (576)
94 PRK10787 DNA-binding ATP-depen 99.5 3.4E-13 7.4E-18 153.2 16.2 158 211-413 323-507 (784)
95 PRK14953 DNA polymerase III su 99.5 7.7E-13 1.7E-17 143.1 17.9 155 204-415 10-194 (486)
96 PRK06305 DNA polymerase III su 99.5 9.9E-13 2.2E-17 141.2 18.4 153 204-413 11-194 (451)
97 TIGR03420 DnaA_homol_Hda DnaA 99.5 3.7E-13 8.1E-18 131.2 13.6 185 203-442 8-201 (226)
98 TIGR02640 gas_vesic_GvpN gas v 99.5 7E-13 1.5E-17 132.9 15.8 130 244-414 21-200 (262)
99 PRK09111 DNA polymerase III su 99.5 1E-12 2.2E-17 145.0 18.3 155 204-415 18-207 (598)
100 PRK08451 DNA polymerase III su 99.5 1.6E-12 3.4E-17 141.0 18.9 179 204-440 8-216 (535)
101 PRK12402 replication factor C 99.5 1.9E-12 4E-17 133.9 18.6 154 204-415 9-200 (337)
102 PRK14955 DNA polymerase III su 99.5 7.6E-13 1.7E-17 140.3 15.8 153 204-413 10-200 (397)
103 TIGR02902 spore_lonB ATP-depen 99.5 8.4E-13 1.8E-17 144.7 16.1 202 204-461 59-330 (531)
104 PRK06647 DNA polymerase III su 99.5 1.5E-12 3.2E-17 143.0 18.1 153 204-413 10-192 (563)
105 COG2607 Predicted ATPase (AAA+ 99.5 2.1E-12 4.5E-17 123.9 16.4 172 198-415 48-242 (287)
106 PRK14954 DNA polymerase III su 99.4 2.5E-12 5.4E-17 142.1 18.5 153 204-413 10-200 (620)
107 PRK14948 DNA polymerase III su 99.4 2.9E-12 6.2E-17 142.3 19.0 153 204-413 10-194 (620)
108 PRK05342 clpX ATP-dependent pr 99.4 4.5E-12 9.8E-17 134.2 18.7 102 208-309 68-187 (412)
109 PRK14950 DNA polymerase III su 99.4 3.7E-12 7.9E-17 141.3 18.4 154 204-414 10-194 (585)
110 PRK11034 clpA ATP-dependent Cl 99.4 2.5E-12 5.4E-17 145.3 17.1 155 211-413 459-667 (758)
111 TIGR02928 orc1/cdc6 family rep 99.4 6E-12 1.3E-16 131.7 18.8 157 210-413 15-213 (365)
112 KOG0989 Replication factor C, 99.4 1.2E-12 2.7E-17 129.5 12.5 152 203-412 29-201 (346)
113 PRK14971 DNA polymerase III su 99.4 4.9E-12 1.1E-16 140.4 18.6 155 204-415 11-196 (614)
114 TIGR00362 DnaA chromosomal rep 99.4 2.3E-12 5E-17 137.1 14.8 192 203-444 103-312 (405)
115 PRK00149 dnaA chromosomal repl 99.4 1.7E-12 3.6E-17 140.0 13.7 193 203-444 115-324 (450)
116 PRK08903 DnaA regulatory inact 99.4 3.8E-12 8.2E-17 124.6 14.4 153 203-413 11-171 (227)
117 PRK00440 rfc replication facto 99.4 1.2E-11 2.6E-16 126.8 18.6 159 197-415 6-177 (319)
118 CHL00095 clpC Clp protease ATP 99.4 5.4E-13 1.2E-17 153.4 9.5 152 207-411 176-353 (821)
119 PRK13341 recombination factor 99.4 6.6E-12 1.4E-16 141.2 16.2 152 204-413 22-182 (725)
120 TIGR00382 clpX endopeptidase C 99.4 1.5E-11 3.1E-16 129.9 17.3 177 209-411 75-330 (413)
121 TIGR02639 ClpA ATP-dependent C 99.4 1.8E-11 3.8E-16 139.4 18.6 154 211-413 455-663 (731)
122 PRK08084 DNA replication initi 99.4 9E-12 1.9E-16 122.9 13.7 157 204-412 16-180 (235)
123 PRK07471 DNA polymerase III su 99.4 5.1E-11 1.1E-15 124.6 20.0 177 204-442 13-238 (365)
124 PRK08727 hypothetical protein; 99.3 3E-11 6.5E-16 119.0 16.7 156 203-413 12-176 (233)
125 cd00009 AAA The AAA+ (ATPases 99.3 1.5E-11 3.2E-16 109.5 13.0 116 243-398 18-151 (151)
126 TIGR01650 PD_CobS cobaltochela 99.3 5.4E-12 1.2E-16 128.6 9.7 133 243-412 63-233 (327)
127 PRK00411 cdc6 cell division co 99.3 6.9E-11 1.5E-15 125.1 18.6 158 208-413 28-221 (394)
128 PRK09112 DNA polymerase III su 99.3 1.3E-10 2.9E-15 120.8 19.7 180 204-443 17-241 (351)
129 PF07728 AAA_5: AAA domain (dy 99.3 2.4E-12 5.2E-17 116.1 5.4 105 246-390 1-139 (139)
130 PRK13407 bchI magnesium chelat 99.3 1.1E-10 2.4E-15 120.4 18.1 156 205-413 3-217 (334)
131 PRK05564 DNA polymerase III su 99.3 3.2E-10 7E-15 116.6 21.1 148 208-412 2-165 (313)
132 PRK05642 DNA replication initi 99.3 6.4E-11 1.4E-15 116.7 15.2 159 203-412 12-179 (234)
133 PRK14086 dnaA chromosomal repl 99.3 3.4E-11 7.4E-16 131.7 14.4 190 203-443 281-489 (617)
134 TIGR02903 spore_lon_C ATP-depe 99.3 1.2E-10 2.5E-15 129.8 17.7 173 204-432 148-384 (615)
135 PRK14088 dnaA chromosomal repl 99.3 4.3E-11 9.3E-16 128.4 13.3 189 204-443 99-306 (440)
136 COG2812 DnaX DNA polymerase II 99.3 6.4E-11 1.4E-15 127.3 14.5 155 204-415 10-194 (515)
137 PHA02244 ATPase-like protein 99.2 8.9E-11 1.9E-15 121.1 14.2 121 244-403 119-265 (383)
138 COG0714 MoxR-like ATPases [Gen 99.2 8.8E-11 1.9E-15 121.6 14.4 130 244-413 43-204 (329)
139 PTZ00112 origin recognition co 99.2 2.8E-10 6E-15 126.6 18.7 156 210-414 755-951 (1164)
140 PRK10865 protein disaggregatio 99.2 2.1E-10 4.6E-15 132.2 17.8 157 209-413 567-780 (857)
141 PRK12422 chromosomal replicati 99.2 6E-11 1.3E-15 127.2 11.7 130 245-415 142-287 (445)
142 TIGR00678 holB DNA polymerase 99.2 2.8E-10 6E-15 108.2 14.8 125 242-411 12-167 (188)
143 KOG1969 DNA replication checkp 99.2 1.8E-10 3.9E-15 125.0 14.4 188 201-415 262-484 (877)
144 TIGR03346 chaperone_ClpB ATP-d 99.2 5.4E-10 1.2E-14 129.2 18.8 156 210-413 565-777 (852)
145 PRK05201 hslU ATP-dependent pr 99.2 1.8E-10 3.9E-15 120.5 13.3 64 211-280 16-86 (443)
146 PF00308 Bac_DnaA: Bacterial d 99.2 1.6E-10 3.4E-15 112.8 12.0 156 245-442 35-208 (219)
147 PRK14087 dnaA chromosomal repl 99.2 3.9E-10 8.4E-15 121.3 15.8 190 206-444 111-321 (450)
148 PRK06620 hypothetical protein; 99.2 5.7E-10 1.2E-14 108.5 15.6 146 205-413 11-161 (214)
149 CHL00081 chlI Mg-protoporyphyr 99.2 1.7E-10 3.6E-15 119.4 12.0 154 207-413 14-233 (350)
150 TIGR03345 VI_ClpV1 type VI sec 99.2 4.1E-10 9E-15 129.5 16.4 154 210-413 566-781 (852)
151 COG0542 clpA ATP-binding subun 99.2 4.9E-10 1.1E-14 124.9 16.1 156 210-413 491-706 (786)
152 TIGR00390 hslU ATP-dependent p 99.1 3.8E-10 8.2E-15 118.1 13.4 70 211-280 13-83 (441)
153 KOG2028 ATPase related to the 99.1 1.9E-10 4.1E-15 116.1 9.7 150 204-411 132-293 (554)
154 CHL00095 clpC Clp protease ATP 99.1 1.1E-09 2.4E-14 126.2 17.2 155 210-413 509-733 (821)
155 TIGR02030 BchI-ChlI magnesium 99.1 4.6E-10 1E-14 116.0 11.5 153 208-413 2-220 (337)
156 PRK11331 5-methylcytosine-spec 99.1 1.1E-09 2.3E-14 115.9 13.8 26 244-269 194-219 (459)
157 PRK07399 DNA polymerase III su 99.1 4.1E-09 8.9E-14 108.2 17.6 174 208-443 2-222 (314)
158 PRK05707 DNA polymerase III su 99.1 3E-09 6.5E-14 109.8 16.5 124 243-411 21-177 (328)
159 PRK07952 DNA replication prote 99.1 6.6E-10 1.4E-14 109.9 10.9 98 203-307 65-174 (244)
160 PRK09087 hypothetical protein; 99.1 1.4E-09 3E-14 106.7 13.0 119 246-415 46-169 (226)
161 PF07724 AAA_2: AAA domain (Cd 99.1 2E-10 4.4E-15 107.7 6.7 108 244-378 3-131 (171)
162 PRK08116 hypothetical protein; 99.1 8.9E-10 1.9E-14 110.8 11.4 149 207-401 82-251 (268)
163 PRK08058 DNA polymerase III su 99.0 2.1E-09 4.5E-14 111.3 13.7 146 208-410 3-180 (329)
164 smart00382 AAA ATPases associa 99.0 1E-09 2.2E-14 96.6 9.3 65 244-308 2-91 (148)
165 smart00763 AAA_PrkA PrkA AAA d 99.0 6.8E-09 1.5E-13 107.2 16.0 64 207-277 47-118 (361)
166 PF07726 AAA_3: ATPase family 99.0 2.2E-10 4.8E-15 101.0 3.8 106 246-391 1-130 (131)
167 PRK06964 DNA polymerase III su 99.0 3.5E-08 7.7E-13 102.1 19.6 125 242-411 19-203 (342)
168 TIGR02442 Cob-chelat-sub cobal 99.0 5.3E-09 1.2E-13 117.2 13.8 152 208-412 2-214 (633)
169 COG1474 CDC6 Cdc6-related prot 99.0 1.9E-08 4.2E-13 105.2 17.1 153 212-413 19-204 (366)
170 PRK13531 regulatory ATPase Rav 98.9 7.4E-09 1.6E-13 110.5 13.5 128 244-411 39-193 (498)
171 TIGR00602 rad24 checkpoint pro 98.9 1.1E-08 2.5E-13 113.3 15.3 204 197-460 73-328 (637)
172 PRK08939 primosomal protein Dn 98.9 3.5E-09 7.6E-14 108.3 9.9 97 206-307 123-229 (306)
173 PRK12377 putative replication 98.9 5.1E-09 1.1E-13 103.8 10.4 95 206-307 70-175 (248)
174 KOG0741 AAA+-type ATPase [Post 98.9 2E-08 4.3E-13 105.8 15.0 136 243-409 537-683 (744)
175 COG0542 clpA ATP-binding subun 98.9 2.2E-09 4.9E-14 119.7 8.1 155 208-412 168-346 (786)
176 PF13177 DNA_pol3_delta2: DNA 98.9 2.9E-08 6.3E-13 92.3 14.3 112 242-398 17-160 (162)
177 COG0470 HolB ATPase involved i 98.9 1.5E-08 3.2E-13 104.0 13.3 118 244-406 24-175 (325)
178 PRK08181 transposase; Validate 98.8 9.4E-09 2E-13 103.1 9.0 64 244-307 106-179 (269)
179 COG1219 ClpX ATP-dependent pro 98.8 1.4E-08 3E-13 101.4 9.9 65 244-308 97-175 (408)
180 PF01078 Mg_chelatase: Magnesi 98.8 9.4E-09 2E-13 98.3 8.3 46 208-268 1-46 (206)
181 smart00350 MCM minichromosome 98.8 1.4E-08 3.1E-13 111.0 10.9 127 246-413 238-401 (509)
182 TIGR02031 BchD-ChlD magnesium 98.8 2.5E-08 5.5E-13 110.7 11.3 128 245-412 17-174 (589)
183 PRK04132 replication factor C 98.8 8.9E-08 1.9E-12 109.0 15.6 122 247-413 567-703 (846)
184 PRK07993 DNA polymerase III su 98.8 1.2E-07 2.7E-12 98.2 15.3 124 242-410 22-178 (334)
185 PRK06871 DNA polymerase III su 98.8 2.2E-07 4.7E-12 95.7 16.8 124 243-411 23-178 (325)
186 PRK06090 DNA polymerase III su 98.8 5.9E-07 1.3E-11 92.2 19.7 124 242-410 23-178 (319)
187 PRK11608 pspF phage shock prot 98.8 8.9E-08 1.9E-12 99.1 13.4 153 208-412 4-194 (326)
188 PRK08769 DNA polymerase III su 98.7 4.9E-07 1.1E-11 92.9 17.7 124 242-410 24-183 (319)
189 PF03215 Rad17: Rad17 cell cyc 98.7 1.2E-07 2.7E-12 103.2 14.0 71 195-275 6-76 (519)
190 PF00158 Sigma54_activat: Sigm 98.7 9.4E-08 2E-12 89.4 11.0 85 213-308 2-106 (168)
191 PF01695 IstB_IS21: IstB-like 98.7 7.1E-09 1.5E-13 97.9 3.5 64 243-306 46-119 (178)
192 PRK06526 transposase; Provisio 98.7 1.4E-08 3E-13 101.2 5.6 64 244-307 98-171 (254)
193 TIGR01817 nifA Nif-specific re 98.7 1.1E-07 2.4E-12 104.9 13.2 89 207-307 193-302 (534)
194 TIGR02974 phageshock_pspF psp 98.7 1.3E-07 2.9E-12 97.9 11.8 149 213-413 2-188 (329)
195 PRK11388 DNA-binding transcrip 98.7 1.8E-07 3.8E-12 105.5 13.5 90 207-307 322-428 (638)
196 PRK06921 hypothetical protein; 98.7 1.1E-07 2.5E-12 95.4 10.6 63 244-306 117-188 (266)
197 TIGR03015 pepcterm_ATPase puta 98.7 5.4E-07 1.2E-11 90.1 15.1 155 246-442 45-238 (269)
198 PRK08699 DNA polymerase III su 98.7 1.4E-07 3.1E-12 97.3 11.1 123 242-409 19-182 (325)
199 KOG0745 Putative ATP-dependent 98.6 1E-07 2.2E-12 98.6 9.1 65 244-308 226-304 (564)
200 PRK06835 DNA replication prote 98.6 1.4E-07 3E-12 97.5 10.1 63 245-307 184-258 (329)
201 COG0593 DnaA ATPase involved i 98.6 2E-07 4.4E-12 97.8 10.7 163 204-415 81-260 (408)
202 PF12775 AAA_7: P-loop contain 98.6 1.2E-07 2.6E-12 95.6 8.5 137 244-413 33-194 (272)
203 COG1484 DnaC DNA replication p 98.6 3.2E-07 7E-12 91.5 10.0 91 209-307 78-179 (254)
204 PRK09183 transposase/IS protei 98.5 1.3E-07 2.7E-12 94.8 6.8 64 244-307 102-176 (259)
205 PRK10820 DNA-binding transcrip 98.5 1.2E-06 2.6E-11 96.3 15.0 91 205-307 199-310 (520)
206 COG1239 ChlI Mg-chelatase subu 98.5 1.2E-06 2.7E-11 91.2 13.7 154 207-413 14-233 (423)
207 PF01637 Arch_ATPase: Archaeal 98.5 1.1E-06 2.3E-11 85.2 12.2 159 244-441 20-233 (234)
208 PF14532 Sigma54_activ_2: Sigm 98.5 2E-07 4.4E-12 84.1 6.3 74 217-307 5-81 (138)
209 PF13173 AAA_14: AAA domain 98.5 6.2E-07 1.3E-11 79.9 9.3 63 245-307 3-73 (128)
210 TIGR00368 Mg chelatase-related 98.5 4.7E-07 1E-11 98.5 10.1 47 207-268 189-235 (499)
211 TIGR02329 propionate_PrpR prop 98.5 7.7E-07 1.7E-11 97.4 11.3 91 205-307 207-319 (526)
212 PRK15424 propionate catabolism 98.5 9.2E-07 2E-11 96.9 11.7 89 207-307 216-334 (538)
213 KOG0991 Replication factor C, 98.5 1E-06 2.2E-11 84.7 10.2 95 201-308 18-126 (333)
214 PRK09862 putative ATP-dependen 98.4 5.3E-07 1.1E-11 97.8 9.1 120 244-403 210-392 (506)
215 PF00910 RNA_helicase: RNA hel 98.4 3.2E-07 6.9E-12 79.2 5.9 61 247-307 1-61 (107)
216 PRK15429 formate hydrogenlyase 98.4 1.3E-06 2.7E-11 99.4 12.2 90 206-307 372-482 (686)
217 PF12774 AAA_6: Hydrolytic ATP 98.4 4.6E-06 9.9E-11 82.0 14.4 65 243-307 31-96 (231)
218 PHA02624 large T antigen; Prov 98.4 1.1E-06 2.5E-11 95.6 10.8 125 240-398 427-561 (647)
219 PRK05022 anaerobic nitric oxid 98.4 3.8E-06 8.3E-11 92.2 14.1 88 208-307 185-293 (509)
220 PRK05818 DNA polymerase III su 98.4 1.6E-05 3.4E-10 79.0 16.1 113 242-399 5-147 (261)
221 PF05729 NACHT: NACHT domain 98.3 3.5E-06 7.6E-11 77.2 10.8 133 245-413 1-164 (166)
222 COG1221 PspF Transcriptional r 98.3 3.4E-06 7.4E-11 88.5 10.9 158 206-413 74-265 (403)
223 PF13401 AAA_22: AAA domain; P 98.3 1.9E-06 4.2E-11 76.2 7.8 64 244-307 4-99 (131)
224 KOG1051 Chaperone HSP104 and r 98.3 4.8E-06 1E-10 94.6 11.7 122 211-376 563-710 (898)
225 PF05621 TniB: Bacterial TniB 98.2 1.1E-05 2.5E-10 81.3 12.6 84 220-309 43-159 (302)
226 PF03969 AFG1_ATPase: AFG1-lik 98.2 2.5E-06 5.4E-11 89.3 7.9 100 240-380 58-172 (362)
227 PRK05917 DNA polymerase III su 98.2 1.7E-05 3.8E-10 80.2 13.2 113 242-399 17-154 (290)
228 KOG0990 Replication factor C, 98.2 4.7E-06 1E-10 83.7 8.8 158 197-414 30-205 (360)
229 COG0606 Predicted ATPase with 98.2 2.7E-06 5.9E-11 89.8 7.0 48 206-268 175-222 (490)
230 PRK07276 DNA polymerase III su 98.2 6.9E-05 1.5E-09 76.0 16.9 120 242-409 22-172 (290)
231 PTZ00111 DNA replication licen 98.2 6.2E-06 1.3E-10 93.9 10.2 127 246-412 494-657 (915)
232 PRK07132 DNA polymerase III su 98.2 3.6E-05 7.8E-10 78.5 14.8 123 242-409 16-159 (299)
233 PRK10923 glnG nitrogen regulat 98.2 1.3E-05 2.7E-10 87.1 11.7 88 208-307 136-244 (469)
234 KOG2227 Pre-initiation complex 98.2 9.3E-05 2E-09 77.9 17.3 175 210-432 150-358 (529)
235 KOG2035 Replication factor C, 98.1 2.6E-05 5.7E-10 77.0 11.7 156 203-416 6-203 (351)
236 PRK11361 acetoacetate metaboli 98.1 1.5E-05 3.4E-10 86.0 11.4 64 244-308 166-250 (457)
237 PF00931 NB-ARC: NB-ARC domain 98.1 3.9E-05 8.3E-10 77.4 13.3 150 242-439 17-199 (287)
238 KOG1514 Origin recognition com 98.1 0.00013 2.9E-09 80.0 18.0 130 246-415 424-592 (767)
239 PLN03210 Resistant to P. syrin 98.1 4E-05 8.6E-10 92.1 15.0 58 202-270 176-233 (1153)
240 TIGR01818 ntrC nitrogen regula 98.1 3.2E-05 6.9E-10 83.7 12.5 152 210-413 134-323 (463)
241 PRK13406 bchD magnesium chelat 98.0 1.8E-05 4E-10 87.6 10.3 119 245-403 26-173 (584)
242 KOG1970 Checkpoint RAD17-RFC c 98.0 9.7E-05 2.1E-09 79.1 14.9 72 197-276 71-142 (634)
243 TIGR02915 PEP_resp_reg putativ 98.0 3.2E-05 7E-10 83.3 11.6 88 208-307 137-245 (445)
244 PHA00729 NTP-binding motif con 98.0 7.9E-06 1.7E-10 79.6 5.7 62 246-307 19-94 (226)
245 PRK15115 response regulator Gl 97.9 5.3E-05 1.1E-09 81.6 11.3 64 244-308 157-241 (444)
246 PHA02774 E1; Provisional 97.9 7.4E-05 1.6E-09 81.4 12.2 58 240-304 430-488 (613)
247 PF06068 TIP49: TIP49 C-termin 97.9 2.6E-05 5.6E-10 80.5 7.9 77 209-293 23-106 (398)
248 PF13207 AAA_17: AAA domain; P 97.9 7.7E-06 1.7E-10 71.5 3.3 30 247-276 2-31 (121)
249 COG1220 HslU ATP-dependent pro 97.9 0.00019 4.1E-09 72.9 13.4 69 211-279 16-85 (444)
250 COG3829 RocR Transcriptional r 97.9 6E-05 1.3E-09 80.9 10.1 92 204-307 239-352 (560)
251 cd01120 RecA-like_NTPases RecA 97.9 9.5E-05 2.1E-09 67.1 9.9 31 247-277 2-35 (165)
252 TIGR02237 recomb_radB DNA repa 97.8 7.5E-05 1.6E-09 71.9 9.2 40 240-279 8-50 (209)
253 KOG1968 Replication factor C, 97.8 0.00012 2.5E-09 84.1 11.8 174 197-415 309-505 (871)
254 CHL00195 ycf46 Ycf46; Provisio 97.8 0.0007 1.5E-08 73.7 16.8 124 368-497 116-244 (489)
255 PRK15455 PrkA family serine pr 97.8 3.4E-05 7.4E-10 84.0 6.6 67 204-277 70-137 (644)
256 COG1224 TIP49 DNA helicase TIP 97.8 3.3E-05 7.2E-10 78.7 6.0 75 210-292 39-120 (450)
257 PRK00131 aroK shikimate kinase 97.8 2.3E-05 4.9E-10 72.8 4.2 35 242-276 2-36 (175)
258 KOG0478 DNA replication licens 97.7 5.6E-05 1.2E-09 82.6 7.1 160 211-412 430-626 (804)
259 TIGR01618 phage_P_loop phage n 97.7 3E-05 6.5E-10 75.6 4.4 62 244-307 12-93 (220)
260 KOG2170 ATPase of the AAA+ sup 97.7 0.00016 3.4E-09 72.5 9.1 89 211-307 83-190 (344)
261 PRK08118 topology modulation p 97.7 8.1E-05 1.7E-09 69.6 6.2 32 246-277 3-34 (167)
262 PF10443 RNA12: RNA12 protein; 97.7 0.002 4.3E-08 68.0 17.0 87 370-458 186-297 (431)
263 PF14516 AAA_35: AAA-like doma 97.7 0.0012 2.5E-08 68.7 15.2 158 244-441 31-238 (331)
264 PRK07261 topology modulation p 97.7 6.1E-05 1.3E-09 70.6 5.2 30 247-276 3-32 (171)
265 PF05707 Zot: Zonular occluden 97.6 9.2E-05 2E-09 70.8 6.4 114 247-399 3-146 (193)
266 COG5245 DYN1 Dynein, heavy cha 97.6 0.00039 8.5E-09 81.3 12.2 141 241-414 1491-1660(3164)
267 PRK10365 transcriptional regul 97.6 0.00032 6.9E-09 75.4 10.9 64 244-308 162-246 (441)
268 PRK14722 flhF flagellar biosyn 97.6 0.00018 4E-09 75.4 8.7 62 244-305 137-225 (374)
269 COG5271 MDN1 AAA ATPase contai 97.6 0.0003 6.5E-09 82.8 10.6 124 244-412 1543-1703(4600)
270 PF00493 MCM: MCM2/3/5 family 97.6 4.3E-05 9.3E-10 79.3 3.4 130 246-415 59-224 (331)
271 cd01124 KaiC KaiC is a circadi 97.6 0.00048 1E-08 64.7 10.1 31 247-277 2-35 (187)
272 PRK03839 putative kinase; Prov 97.5 7.5E-05 1.6E-09 70.3 3.7 30 247-276 3-32 (180)
273 cd00464 SK Shikimate kinase (S 97.5 8.7E-05 1.9E-09 67.5 3.9 30 247-276 2-31 (154)
274 cd01394 radB RadB. The archaea 97.5 0.00051 1.1E-08 66.6 9.4 39 240-278 15-56 (218)
275 PF13671 AAA_33: AAA domain; P 97.5 5.3E-05 1.2E-09 68.0 2.1 28 247-274 2-29 (143)
276 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00044 9.5E-09 67.2 8.7 64 244-307 29-120 (213)
277 PRK00625 shikimate kinase; Pro 97.5 9.4E-05 2E-09 69.6 3.8 31 246-276 2-32 (173)
278 PRK13947 shikimate kinase; Pro 97.5 9.7E-05 2.1E-09 68.7 3.8 32 246-277 3-34 (171)
279 COG1618 Predicted nucleotide k 97.5 0.00036 7.9E-09 63.9 7.4 24 245-268 6-29 (179)
280 PF06309 Torsin: Torsin; Inte 97.5 0.0002 4.4E-09 63.3 5.4 52 211-268 26-77 (127)
281 COG1485 Predicted ATPase [Gene 97.4 0.00019 4.2E-09 73.4 5.9 30 241-270 62-91 (367)
282 PRK13949 shikimate kinase; Pro 97.4 0.00011 2.3E-09 68.8 3.8 31 246-276 3-33 (169)
283 PF13604 AAA_30: AAA domain; P 97.4 0.0019 4E-08 62.0 12.2 36 244-279 18-56 (196)
284 PRK12723 flagellar biosynthesi 97.4 0.0019 4E-08 68.4 12.9 65 243-307 173-266 (388)
285 PTZ00202 tuzin; Provisional 97.4 0.014 3E-07 62.2 19.0 76 205-292 257-332 (550)
286 cd01393 recA_like RecA is a b 97.4 0.00044 9.5E-09 67.3 7.6 40 240-279 15-63 (226)
287 COG1373 Predicted ATPase (AAA+ 97.4 0.0015 3.2E-08 69.6 12.1 132 238-415 32-183 (398)
288 COG0703 AroK Shikimate kinase 97.4 0.00012 2.6E-09 68.2 3.3 32 245-276 3-34 (172)
289 PRK06067 flagellar accessory p 97.4 0.00079 1.7E-08 66.2 9.2 38 240-277 21-61 (234)
290 TIGR02012 tigrfam_recA protein 97.4 0.00065 1.4E-08 69.9 8.8 70 240-309 51-147 (321)
291 COG2204 AtoC Response regulato 97.4 0.0013 2.8E-08 70.5 11.1 89 208-307 139-247 (464)
292 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00047 1E-08 67.5 7.3 40 240-279 15-63 (235)
293 cd03283 ABC_MutS-like MutS-lik 97.3 0.0011 2.4E-08 63.7 9.6 64 244-307 25-117 (199)
294 PRK06217 hypothetical protein; 97.3 0.00018 3.9E-09 68.1 3.9 31 246-276 3-33 (183)
295 PF05272 VirE: Virulence-assoc 97.3 0.0011 2.5E-08 63.6 9.5 60 240-307 48-107 (198)
296 PRK05800 cobU adenosylcobinami 97.3 0.00041 8.9E-09 65.1 6.3 63 246-308 3-89 (170)
297 TIGR02688 conserved hypothetic 97.3 0.002 4.4E-08 68.1 11.9 60 244-307 209-272 (449)
298 PRK13948 shikimate kinase; Pro 97.3 0.00023 5E-09 67.5 4.4 35 242-276 8-42 (182)
299 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00019 4.1E-09 67.5 3.8 28 247-274 2-29 (183)
300 cd02021 GntK Gluconate kinase 97.3 0.00019 4.1E-09 65.3 3.6 28 247-274 2-29 (150)
301 PRK09361 radB DNA repair and r 97.3 0.00073 1.6E-08 65.9 7.9 39 240-278 19-60 (225)
302 PRK08154 anaerobic benzoate ca 97.3 0.00046 9.9E-09 71.0 6.7 58 214-276 108-165 (309)
303 PRK04841 transcriptional regul 97.3 0.0084 1.8E-07 70.3 17.9 33 244-277 32-64 (903)
304 TIGR01313 therm_gnt_kin carboh 97.3 0.00021 4.5E-09 66.0 3.6 28 247-274 1-28 (163)
305 cd02020 CMPK Cytidine monophos 97.3 0.00022 4.7E-09 64.2 3.7 30 247-276 2-31 (147)
306 PRK14532 adenylate kinase; Pro 97.3 0.00022 4.7E-09 67.6 3.7 29 247-275 3-31 (188)
307 TIGR03499 FlhF flagellar biosy 97.3 0.0011 2.4E-08 67.2 9.1 60 244-303 194-280 (282)
308 PRK14531 adenylate kinase; Pro 97.2 0.00027 5.9E-09 66.8 4.1 30 245-274 3-32 (183)
309 COG1116 TauB ABC-type nitrate/ 97.2 0.0011 2.4E-08 65.1 8.4 22 247-268 32-53 (248)
310 PF00437 T2SE: Type II/IV secr 97.2 0.00068 1.5E-08 68.1 7.1 90 205-305 99-207 (270)
311 TIGR00150 HI0065_YjeE ATPase, 97.2 0.0011 2.5E-08 59.4 7.7 28 243-270 21-48 (133)
312 PRK11823 DNA repair protein Ra 97.2 0.00098 2.1E-08 72.0 8.7 69 240-308 76-169 (446)
313 PRK13946 shikimate kinase; Pro 97.2 0.00025 5.5E-09 67.2 3.7 33 244-276 10-42 (184)
314 cd00983 recA RecA is a bacter 97.2 0.0012 2.5E-08 68.2 8.7 70 240-309 51-147 (325)
315 KOG1051 Chaperone HSP104 and r 97.2 0.0014 3E-08 75.1 9.8 149 209-409 185-360 (898)
316 cd01428 ADK Adenylate kinase ( 97.2 0.00028 6.1E-09 66.8 3.7 29 247-275 2-30 (194)
317 PRK05057 aroK shikimate kinase 97.2 0.00033 7.1E-09 65.8 4.1 34 244-277 4-37 (172)
318 PRK08533 flagellar accessory p 97.2 0.0015 3.4E-08 64.2 9.0 37 240-276 20-59 (230)
319 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.002 4.3E-08 66.6 9.9 65 208-279 58-124 (358)
320 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.00076 1.7E-08 61.9 6.3 67 243-309 24-112 (157)
321 PRK13765 ATP-dependent proteas 97.2 0.00073 1.6E-08 75.7 7.2 52 204-270 25-76 (637)
322 PF13191 AAA_16: AAA ATPase do 97.2 0.00018 4E-09 67.2 2.1 37 244-280 24-63 (185)
323 KOG2228 Origin recognition com 97.2 0.0024 5.3E-08 65.0 10.0 156 211-415 25-222 (408)
324 cd01121 Sms Sms (bacterial rad 97.2 0.0013 2.7E-08 69.4 8.4 69 240-308 78-171 (372)
325 PRK03731 aroL shikimate kinase 97.2 0.00039 8.4E-09 64.7 4.1 31 246-276 4-34 (171)
326 KOG1942 DNA helicase, TBP-inte 97.1 0.00047 1E-08 68.7 4.4 65 210-282 38-104 (456)
327 KOG3347 Predicted nucleotide k 97.1 0.00036 7.8E-09 63.1 3.2 41 245-287 8-48 (176)
328 TIGR00764 lon_rel lon-related 97.1 0.0011 2.4E-08 74.2 7.4 50 207-271 15-64 (608)
329 PRK06762 hypothetical protein; 97.1 0.00059 1.3E-08 63.2 4.5 33 244-276 2-34 (166)
330 PRK06581 DNA polymerase III su 97.1 0.011 2.5E-07 58.0 13.2 126 243-413 14-162 (263)
331 COG3604 FhlA Transcriptional r 97.1 0.0028 6.1E-08 67.6 9.6 91 206-307 219-329 (550)
332 PRK06547 hypothetical protein; 97.0 0.00066 1.4E-08 63.8 4.5 35 242-276 13-47 (172)
333 PF13086 AAA_11: AAA domain; P 97.0 0.00053 1.2E-08 66.2 3.9 22 247-268 20-41 (236)
334 PRK14530 adenylate kinase; Pro 97.0 0.00057 1.2E-08 66.3 4.1 30 246-275 5-34 (215)
335 COG1241 MCM2 Predicted ATPase 97.0 0.00083 1.8E-08 75.1 5.8 61 247-307 322-395 (682)
336 PRK05973 replicative DNA helic 97.0 0.0027 5.9E-08 62.6 8.9 38 240-277 60-100 (237)
337 COG4619 ABC-type uncharacteriz 97.0 0.0019 4.1E-08 59.8 7.0 24 245-268 30-53 (223)
338 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00058 1.3E-08 64.2 3.9 29 246-274 5-33 (188)
339 PF13245 AAA_19: Part of AAA d 97.0 0.00098 2.1E-08 53.9 4.5 33 246-278 12-51 (76)
340 PRK02496 adk adenylate kinase; 97.0 0.00054 1.2E-08 64.7 3.5 29 247-275 4-32 (184)
341 TIGR01613 primase_Cterm phage/ 97.0 0.0029 6.3E-08 64.9 9.1 83 214-306 53-139 (304)
342 KOG0480 DNA replication licens 97.0 0.0014 3E-08 71.4 6.9 163 209-414 344-544 (764)
343 COG1102 Cmk Cytidylate kinase 97.0 0.00059 1.3E-08 62.6 3.5 28 247-274 3-30 (179)
344 PF08740 BCS1_N: BCS1 N termin 97.0 0.054 1.2E-06 51.3 17.1 138 58-212 27-187 (187)
345 PRK13764 ATPase; Provisional 97.0 0.0026 5.5E-08 70.7 9.1 26 244-269 257-282 (602)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0023 4.9E-08 58.2 7.3 65 242-309 24-102 (144)
347 PRK14528 adenylate kinase; Pro 97.0 0.00065 1.4E-08 64.6 3.8 30 246-275 3-32 (186)
348 COG1855 ATPase (PilT family) [ 97.0 0.0012 2.6E-08 69.4 5.9 89 160-269 185-288 (604)
349 cd00544 CobU Adenosylcobinamid 97.0 0.0025 5.5E-08 59.7 7.5 62 247-308 2-86 (169)
350 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.0032 6.9E-08 60.4 8.4 21 245-265 29-49 (200)
351 PRK05703 flhF flagellar biosyn 96.9 0.011 2.3E-07 63.5 13.2 36 244-279 221-261 (424)
352 PRK12608 transcription termina 96.9 0.0057 1.2E-07 64.0 10.6 24 246-269 135-158 (380)
353 cd02019 NK Nucleoside/nucleoti 96.9 0.0012 2.7E-08 52.1 4.4 29 247-275 2-31 (69)
354 cd03243 ABC_MutS_homologs The 96.9 0.0058 1.3E-07 58.7 10.0 65 244-308 29-121 (202)
355 cd00227 CPT Chloramphenicol (C 96.9 0.00074 1.6E-08 63.3 3.6 31 245-275 3-33 (175)
356 PTZ00088 adenylate kinase 1; P 96.9 0.00075 1.6E-08 66.4 3.8 29 247-275 9-37 (229)
357 TIGR01351 adk adenylate kinase 96.9 0.00079 1.7E-08 65.1 3.7 28 247-274 2-29 (210)
358 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0041 8.9E-08 62.5 9.0 86 206-305 56-159 (264)
359 PF02367 UPF0079: Uncharacteri 96.9 0.0017 3.7E-08 57.5 5.4 66 242-307 13-100 (123)
360 COG1936 Predicted nucleotide k 96.9 0.00064 1.4E-08 63.1 2.8 29 247-276 3-31 (180)
361 PRK00279 adk adenylate kinase; 96.9 0.00088 1.9E-08 65.0 3.8 28 247-274 3-30 (215)
362 PLN02200 adenylate kinase fami 96.9 0.0011 2.3E-08 65.5 4.4 35 244-280 43-77 (234)
363 smart00534 MUTSac ATPase domai 96.9 0.0056 1.2E-07 58.0 9.1 62 247-308 2-91 (185)
364 cd03216 ABC_Carb_Monos_I This 96.8 0.0034 7.3E-08 58.2 7.4 27 242-268 24-50 (163)
365 PRK04182 cytidylate kinase; Pr 96.8 0.00096 2.1E-08 62.2 3.7 28 247-274 3-30 (180)
366 PRK14527 adenylate kinase; Pro 96.8 0.00097 2.1E-08 63.4 3.6 31 244-274 6-36 (191)
367 PRK09376 rho transcription ter 96.8 0.0025 5.5E-08 66.9 6.8 23 247-269 172-194 (416)
368 PRK09354 recA recombinase A; P 96.8 0.0043 9.3E-08 64.5 8.5 70 240-309 56-152 (349)
369 PF13521 AAA_28: AAA domain; P 96.8 0.00091 2E-08 61.8 3.2 26 247-273 2-27 (163)
370 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0031 6.7E-08 59.5 6.8 66 243-308 24-102 (177)
371 TIGR02782 TrbB_P P-type conjug 96.8 0.0037 8E-08 64.0 7.9 62 244-305 132-214 (299)
372 cd03282 ABC_MSH4_euk MutS4 hom 96.8 0.0043 9.2E-08 60.0 7.9 64 244-307 29-120 (204)
373 PRK04040 adenylate kinase; Pro 96.8 0.0012 2.6E-08 62.9 3.9 29 245-273 3-33 (188)
374 COG2874 FlaH Predicted ATPases 96.8 0.0021 4.5E-08 61.7 5.5 35 233-267 15-51 (235)
375 cd01128 rho_factor Transcripti 96.8 0.0044 9.5E-08 61.7 8.0 62 243-306 15-79 (249)
376 PF13238 AAA_18: AAA domain; P 96.8 0.00083 1.8E-08 58.7 2.6 22 247-268 1-22 (129)
377 PRK01184 hypothetical protein; 96.8 0.0012 2.5E-08 62.4 3.7 29 246-275 3-31 (184)
378 PRK06696 uridine kinase; Valid 96.8 0.0045 9.8E-08 60.4 7.9 40 244-283 22-64 (223)
379 COG0563 Adk Adenylate kinase a 96.8 0.00092 2E-08 63.2 2.9 33 246-280 2-34 (178)
380 TIGR02173 cyt_kin_arch cytidyl 96.8 0.0012 2.7E-08 61.0 3.7 29 247-275 3-31 (171)
381 PRK11889 flhF flagellar biosyn 96.8 0.018 4E-07 60.7 12.6 49 216-268 217-265 (436)
382 PRK04296 thymidine kinase; Pro 96.7 0.0084 1.8E-07 57.1 9.5 30 246-275 4-36 (190)
383 PF00406 ADK: Adenylate kinase 96.7 0.00089 1.9E-08 61.1 2.5 26 249-274 1-26 (151)
384 cd03287 ABC_MSH3_euk MutS3 hom 96.7 0.0079 1.7E-07 58.9 9.3 63 244-306 31-121 (222)
385 TIGR02525 plasmid_TraJ plasmid 96.7 0.0054 1.2E-07 64.6 8.5 60 246-305 151-235 (372)
386 cd03247 ABCC_cytochrome_bd The 96.7 0.0061 1.3E-07 57.2 8.1 27 242-268 26-52 (178)
387 PF10236 DAP3: Mitochondrial r 96.7 0.14 2.9E-06 52.8 18.6 47 393-439 258-306 (309)
388 COG3283 TyrR Transcriptional r 96.7 0.014 3.1E-07 60.0 11.0 99 198-307 192-305 (511)
389 PRK06851 hypothetical protein; 96.7 0.02 4.3E-07 60.1 12.3 38 242-279 212-252 (367)
390 cd00046 DEXDc DEAD-like helica 96.7 0.0026 5.7E-08 55.3 5.1 24 245-268 1-24 (144)
391 PHA02530 pseT polynucleotide k 96.7 0.0015 3.3E-08 66.5 4.0 30 245-274 3-33 (300)
392 PLN02199 shikimate kinase 96.7 0.0025 5.4E-08 64.5 5.4 33 244-276 102-134 (303)
393 cd02027 APSK Adenosine 5'-phos 96.7 0.002 4.2E-08 59.0 4.2 30 247-276 2-34 (149)
394 TIGR00416 sms DNA repair prote 96.6 0.0089 1.9E-07 64.7 9.8 69 240-308 90-183 (454)
395 PTZ00035 Rad51 protein; Provis 96.6 0.007 1.5E-07 63.0 8.6 28 240-267 114-141 (337)
396 PRK14526 adenylate kinase; Pro 96.6 0.0018 3.8E-08 62.9 3.9 28 247-274 3-30 (211)
397 PRK08233 hypothetical protein; 96.6 0.0022 4.7E-08 60.0 4.2 24 246-269 5-28 (182)
398 PF08433 KTI12: Chromatin asso 96.6 0.003 6.6E-08 63.6 5.3 61 247-307 4-82 (270)
399 PRK10078 ribose 1,5-bisphospho 96.6 0.0017 3.8E-08 61.5 3.4 29 246-274 4-32 (186)
400 PF01745 IPT: Isopentenyl tran 96.6 0.002 4.4E-08 61.9 3.8 34 246-279 3-36 (233)
401 cd03228 ABCC_MRP_Like The MRP 96.6 0.0089 1.9E-07 55.8 8.0 27 242-268 26-52 (171)
402 KOG3354 Gluconate kinase [Carb 96.5 0.0019 4E-08 58.9 3.2 35 242-276 10-44 (191)
403 PRK00409 recombination and DNA 96.5 0.0074 1.6E-07 69.6 8.9 64 244-307 327-419 (782)
404 smart00072 GuKc Guanylate kina 96.5 0.012 2.6E-07 55.7 8.9 25 244-268 2-26 (184)
405 COG4650 RtcR Sigma54-dependent 96.5 0.0063 1.4E-07 60.9 7.1 71 238-308 202-295 (531)
406 PRK10646 ADP-binding protein; 96.5 0.011 2.5E-07 54.2 8.2 63 244-306 28-112 (153)
407 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0025 5.4E-08 63.3 4.2 31 247-277 2-35 (249)
408 cd03246 ABCC_Protease_Secretio 96.5 0.01 2.3E-07 55.4 8.1 25 244-268 28-52 (173)
409 cd03238 ABC_UvrA The excision 96.5 0.0086 1.9E-07 56.5 7.3 24 243-266 20-43 (176)
410 cd02022 DPCK Dephospho-coenzym 96.4 0.0028 6E-08 59.8 3.9 29 247-276 2-30 (179)
411 COG0467 RAD55 RecA-superfamily 96.4 0.0065 1.4E-07 60.7 6.7 51 239-291 18-71 (260)
412 COG4178 ABC-type uncharacteriz 96.4 0.013 2.9E-07 64.6 9.5 28 241-268 416-443 (604)
413 PRK12339 2-phosphoglycerate ki 96.4 0.0031 6.8E-08 60.5 4.2 29 244-272 3-31 (197)
414 PF00519 PPV_E1_C: Papillomavi 96.4 0.0054 1.2E-07 63.9 6.1 61 240-306 258-318 (432)
415 TIGR01069 mutS2 MutS2 family p 96.4 0.03 6.5E-07 64.5 12.8 23 245-267 323-345 (771)
416 KOG2383 Predicted ATPase [Gene 96.4 0.011 2.4E-07 61.6 8.2 23 243-265 113-135 (467)
417 PF04665 Pox_A32: Poxvirus A32 96.4 0.065 1.4E-06 53.0 13.4 44 367-413 128-171 (241)
418 PRK06851 hypothetical protein; 96.4 0.028 6E-07 59.0 11.4 26 243-268 29-54 (367)
419 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.0037 8.1E-08 62.6 4.6 39 240-278 32-73 (259)
420 cd02025 PanK Pantothenate kina 96.4 0.039 8.5E-07 53.9 11.5 34 247-280 2-40 (220)
421 PRK14021 bifunctional shikimat 96.4 0.0033 7.1E-08 69.7 4.4 37 241-277 2-39 (542)
422 TIGR02236 recomb_radA DNA repa 96.3 0.0082 1.8E-07 61.6 7.0 51 240-290 91-150 (310)
423 PF06431 Polyoma_lg_T_C: Polyo 96.3 0.0062 1.3E-07 62.9 5.9 146 219-407 138-293 (417)
424 cd03286 ABC_MSH6_euk MutS6 hom 96.3 0.016 3.4E-07 56.6 8.5 63 244-306 30-120 (218)
425 PF06745 KaiC: KaiC; InterPro 96.3 0.0037 7.9E-08 61.0 4.0 39 240-278 15-57 (226)
426 COG3854 SpoIIIAA ncharacterize 96.3 0.011 2.4E-07 57.5 7.1 24 246-269 139-162 (308)
427 PRK13833 conjugal transfer pro 96.3 0.0099 2.2E-07 61.4 7.3 62 244-305 144-225 (323)
428 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0053 1.1E-07 60.6 5.1 49 240-290 17-68 (237)
429 smart00487 DEXDc DEAD-like hel 96.3 0.0097 2.1E-07 55.1 6.7 25 245-269 25-50 (201)
430 PRK05541 adenylylsulfate kinas 96.3 0.0048 1.1E-07 57.7 4.5 26 244-269 7-32 (176)
431 PLN02674 adenylate kinase 96.3 0.004 8.7E-08 61.7 4.1 30 244-273 31-60 (244)
432 TIGR02858 spore_III_AA stage I 96.3 0.0072 1.6E-07 60.9 6.0 25 245-269 112-136 (270)
433 PF03266 NTPase_1: NTPase; In 96.3 0.0031 6.8E-08 59.0 3.2 22 247-268 2-23 (168)
434 COG2805 PilT Tfp pilus assembl 96.3 0.016 3.4E-07 58.5 8.2 52 198-269 98-150 (353)
435 cd03227 ABC_Class2 ABC-type Cl 96.3 0.011 2.3E-07 54.8 6.7 64 245-308 22-112 (162)
436 PRK14529 adenylate kinase; Pro 96.3 0.0032 6.9E-08 61.6 3.3 27 247-273 3-29 (223)
437 PF13479 AAA_24: AAA domain 96.3 0.0033 7E-08 61.1 3.3 59 246-307 5-80 (213)
438 cd01853 Toc34_like Toc34-like 96.3 0.069 1.5E-06 53.2 12.8 27 242-268 29-55 (249)
439 PRK12724 flagellar biosynthesi 96.3 0.065 1.4E-06 57.1 13.2 35 244-278 223-261 (432)
440 PRK00889 adenylylsulfate kinas 96.3 0.0054 1.2E-07 57.3 4.7 25 244-268 4-28 (175)
441 COG2804 PulE Type II secretory 96.2 0.0071 1.5E-07 65.0 6.0 83 206-305 234-337 (500)
442 PRK09519 recA DNA recombinatio 96.2 0.013 2.8E-07 66.9 8.2 70 240-309 56-152 (790)
443 PF12780 AAA_8: P-loop contain 96.2 0.012 2.7E-07 59.2 7.3 62 244-305 31-99 (268)
444 COG3378 Phage associated DNA p 96.2 0.022 4.8E-07 62.2 9.7 90 209-306 201-293 (517)
445 COG4133 CcmA ABC-type transpor 96.2 0.025 5.5E-07 53.4 8.7 25 245-269 29-53 (209)
446 TIGR02322 phosphon_PhnN phosph 96.2 0.0036 7.8E-08 58.7 3.2 25 246-270 3-27 (179)
447 TIGR02533 type_II_gspE general 96.2 0.011 2.3E-07 64.7 7.2 86 205-305 217-321 (486)
448 cd03230 ABC_DR_subfamily_A Thi 96.2 0.018 3.8E-07 53.9 7.8 25 244-268 26-50 (173)
449 cd03284 ABC_MutS1 MutS1 homolo 96.2 0.011 2.3E-07 57.7 6.5 61 245-305 31-119 (216)
450 PRK00771 signal recognition pa 96.2 0.015 3.2E-07 62.6 8.2 37 243-279 94-133 (437)
451 COG0529 CysC Adenylylsulfate k 96.2 0.0077 1.7E-07 56.2 5.2 37 244-280 23-62 (197)
452 PF01583 APS_kinase: Adenylyls 96.2 0.006 1.3E-07 56.3 4.4 35 245-279 3-40 (156)
453 TIGR00767 rho transcription te 96.2 0.012 2.7E-07 62.1 7.3 25 245-269 169-193 (415)
454 COG0802 Predicted ATPase or ki 96.2 0.016 3.5E-07 52.7 7.1 63 243-305 24-108 (149)
455 PRK09825 idnK D-gluconate kina 96.2 0.0082 1.8E-07 56.5 5.5 26 246-271 5-30 (176)
456 COG3267 ExeA Type II secretory 96.2 0.12 2.6E-06 51.1 13.6 159 242-443 48-246 (269)
457 PRK12338 hypothetical protein; 96.2 0.0045 9.8E-08 63.5 4.0 29 244-272 4-32 (319)
458 PRK13894 conjugal transfer ATP 96.2 0.017 3.7E-07 59.6 8.2 62 244-305 148-229 (319)
459 PF00488 MutS_V: MutS domain V 96.2 0.013 2.7E-07 58.0 6.9 63 244-306 43-133 (235)
460 PRK14730 coaE dephospho-CoA ki 96.1 0.0047 1E-07 59.2 3.7 30 247-276 4-33 (195)
461 PRK11174 cysteine/glutathione 96.1 0.0086 1.9E-07 67.0 6.3 28 241-268 373-400 (588)
462 cd04159 Arl10_like Arl10-like 96.1 0.01 2.3E-07 53.0 5.7 21 247-267 2-22 (159)
463 cd04177 RSR1 RSR1 subgroup. R 96.1 0.027 5.9E-07 51.8 8.6 22 247-268 4-25 (168)
464 PRK04301 radA DNA repair and r 96.1 0.012 2.6E-07 60.7 6.8 40 240-279 98-146 (317)
465 PLN02165 adenylate isopentenyl 96.1 0.005 1.1E-07 63.5 3.9 34 245-278 44-77 (334)
466 PRK11545 gntK gluconate kinase 96.1 0.0042 9E-08 57.7 3.0 26 250-275 1-26 (163)
467 TIGR00064 ftsY signal recognit 96.1 0.014 3E-07 59.0 7.0 36 243-278 71-109 (272)
468 PF06414 Zeta_toxin: Zeta toxi 96.1 0.0056 1.2E-07 58.7 3.9 39 242-280 13-52 (199)
469 PRK10416 signal recognition pa 96.1 0.01 2.2E-07 61.3 5.9 34 244-277 114-150 (318)
470 PF13555 AAA_29: P-loop contai 96.1 0.0061 1.3E-07 47.2 3.3 23 246-268 25-47 (62)
471 PLN02459 probable adenylate ki 96.0 0.0069 1.5E-07 60.5 4.4 28 246-273 31-58 (261)
472 cd02024 NRK1 Nicotinamide ribo 96.0 0.0055 1.2E-07 58.4 3.5 30 247-276 2-32 (187)
473 PRK13808 adenylate kinase; Pro 96.0 0.0053 1.2E-07 63.4 3.7 28 247-274 3-30 (333)
474 smart00173 RAS Ras subfamily o 96.0 0.04 8.6E-07 50.2 9.2 21 247-267 3-23 (164)
475 TIGR02788 VirB11 P-type DNA tr 96.0 0.019 4.1E-07 59.0 7.7 29 241-269 141-169 (308)
476 TIGR02655 circ_KaiC circadian 96.0 0.012 2.7E-07 64.2 6.7 51 240-292 17-71 (484)
477 PRK00081 coaE dephospho-CoA ki 96.0 0.0065 1.4E-07 58.1 4.0 30 246-276 4-33 (194)
478 cd00984 DnaB_C DnaB helicase C 96.0 0.0085 1.8E-07 58.9 4.9 40 240-279 9-52 (242)
479 TIGR02655 circ_KaiC circadian 96.0 0.013 2.7E-07 64.2 6.6 37 240-276 259-298 (484)
480 TIGR01420 pilT_fam pilus retra 96.0 0.019 4.2E-07 59.9 7.7 61 245-305 123-205 (343)
481 PRK12337 2-phosphoglycerate ki 96.0 0.016 3.5E-07 62.2 7.2 29 243-271 254-282 (475)
482 PRK05480 uridine/cytidine kina 96.0 0.0087 1.9E-07 57.7 4.8 26 244-269 6-31 (209)
483 cd00876 Ras Ras family. The R 96.0 0.036 7.8E-07 49.8 8.6 21 247-267 2-22 (160)
484 PRK11176 lipid transporter ATP 96.0 0.012 2.6E-07 65.8 6.4 29 241-269 366-394 (582)
485 cd03115 SRP The signal recogni 96.0 0.0085 1.8E-07 55.8 4.4 34 247-280 3-39 (173)
486 cd03239 ABC_SMC_head The struc 96.0 0.027 5.9E-07 53.1 7.9 24 246-269 24-47 (178)
487 PRK14737 gmk guanylate kinase; 96.0 0.0067 1.5E-07 57.7 3.7 26 243-268 3-28 (186)
488 cd04119 RJL RJL (RabJ-Like) su 95.9 0.033 7.1E-07 50.6 8.2 21 247-267 3-23 (168)
489 PRK04328 hypothetical protein; 95.9 0.01 2.2E-07 59.1 5.1 50 240-291 19-71 (249)
490 TIGR02524 dot_icm_DotB Dot/Icm 95.9 0.012 2.6E-07 61.7 5.8 25 244-268 134-158 (358)
491 PF00448 SRP54: SRP54-type pro 95.9 0.0065 1.4E-07 58.3 3.5 25 244-268 1-25 (196)
492 cd01130 VirB11-like_ATPase Typ 95.9 0.0073 1.6E-07 57.3 3.8 26 244-269 25-50 (186)
493 PRK04220 2-phosphoglycerate ki 95.9 0.014 3.1E-07 59.4 6.1 29 243-271 91-119 (301)
494 PRK06761 hypothetical protein; 95.9 0.0077 1.7E-07 61.0 4.2 33 245-277 4-36 (282)
495 TIGR03263 guanyl_kin guanylate 95.9 0.0052 1.1E-07 57.5 2.8 25 246-270 3-27 (180)
496 PRK13657 cyclic beta-1,2-gluca 95.9 0.012 2.6E-07 65.9 6.1 29 241-269 358-386 (588)
497 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.011 2.4E-07 57.7 5.1 38 240-277 16-56 (229)
498 PF09848 DUF2075: Uncharacteri 95.9 0.014 3E-07 61.1 6.1 24 245-268 2-25 (352)
499 TIGR02868 CydC thiol reductant 95.9 0.015 3.3E-07 64.2 6.6 29 241-269 358-386 (529)
500 cd02028 UMPK_like Uridine mono 95.9 0.0088 1.9E-07 56.5 4.1 33 247-279 2-37 (179)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-100 Score=781.43 Aligned_cols=435 Identities=51% Similarity=0.845 Sum_probs=406.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCccHHHHHHHHHHhcccCCCcce
Q 009791 12 TLFATYASMTASLMLFRSMANDFLPEPVRNYACFAFRYFFKPRSKELTLVIEDSNGIARNQIFEAAEAYLSAKIGPSIER 91 (525)
Q Consensus 12 ~~~~~~~S~~a~~~l~r~~~~~~~P~~l~~~~~~~~~~~~~~~~~~~t~~i~e~~~~~~n~~~~a~~~yl~~~~~~~~~~ 91 (525)
++|+++||++|++|++|+|+++++|.+++.||.+++++|++.+++|.++.|.|++|+.+|++|.|+|.||++++++.+.|
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~~r 81 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIAKR 81 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeecCCCceEEEeccCCCeeEEeecceEEEEEEEEEecCCCCCCCCCCCCCceEEEEEEcCcchhhHHHhhhHHHHHH
Q 009791 92 LKICKTPNEKVITIRLEKNEQIIDSFRGVQLRWRFALVEAADGKGNSHSMRPEKRLFELTFHQTHKDMVLNSYLPHVIEL 171 (525)
Q Consensus 92 l~~~~~~~~~~~~~~l~~~~~~~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~~~~v~~~~l~~v~~~ 171 (525)
++.+...+.+++.+.++++++|.|+|+|++++|.+++..+...... ....+.|+|+|+|+++||+.|+.+||+||.+.
T Consensus 82 l~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~--~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~~ 159 (457)
T KOG0743|consen 82 LTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV--EREREKRYFELTFHKKPRELVTLSYLPYVVSK 159 (457)
T ss_pred hhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc--ccCCcceEEEEEecCccHHHhHHhHHHHHHHH
Confidence 9999999999999999999999999999999999998876664322 34567899999999999999999999999999
Q ss_pred HHHhhcccceEEEEecccCCCC---CCCcceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceee
Q 009791 172 AKDMKDKTRVLKMYTLHRVPDY---DAIRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYL 248 (525)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~---~~~~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~L 248 (525)
+++|+++++.+++|+++++..+ .+..|+++.++||++|++|+|++++|++|++||..|++++++|+++|++|+||||
T Consensus 160 ~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYL 239 (457)
T KOG0743|consen 160 AKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYL 239 (457)
T ss_pred HHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccce
Confidence 9999999999999999865322 4678999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhh
Q 009791 249 LYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAA 328 (525)
Q Consensus 249 L~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~ 328 (525)
||||||||||||++||||+|+++||+|+++++..+.+|++++..++++|||+||||||.++++.|...+...
T Consensus 240 LYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~-------- 311 (457)
T KOG0743|consen 240 LYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKEN-------- 311 (457)
T ss_pred eeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccccccccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999988887665321
Q ss_pred hhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHH
Q 009791 329 GAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLA 408 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~ 408 (525)
.....+.+|+|||||++||+||+||+++||||||||+|+|||||+||||||+||+|++|++++++.|+
T Consensus 312 ------------~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La 379 (457)
T KOG0743|consen 312 ------------FEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLA 379 (457)
T ss_pred ------------ccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHH
Confidence 11134679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcCCCcccHHHHHHHHhhcCCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHhhhcCCC
Q 009791 409 ANYLGITDCEHKLVAEIETLLKTINITPAQVAEQFMKSE-DADVALAALIKLLKEKERNGSG 469 (525)
Q Consensus 409 ~~~l~~~~~~~~~~~~i~~l~~~~~~tpadi~~~l~~~~-~~~~al~~l~~al~~~~~~~~~ 469 (525)
+|||+... +|.++++|++++.++.+|||||++.||++. |++.++++|+++|+..+....+
T Consensus 380 ~nYL~~~~-~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~ 440 (457)
T KOG0743|consen 380 SNYLGIEE-DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNK 440 (457)
T ss_pred HHhcCCCC-CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhcc
Confidence 99999874 599999999999999999999999999987 8999999999999999876654
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-45 Score=384.16 Aligned_cols=268 Identities=22% Similarity=0.289 Sum_probs=231.5
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc------
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV------ 280 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l------ 280 (525)
.+|++++|.++...++.+.+.. +++|+.|..+|+.++||+|||||||||||+||+|+|++++.+|+.+...++
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 4799999999999999988875 999999999999999999999999999999999999999999999998887
Q ss_pred CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhc
Q 009791 281 TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFID 358 (525)
Q Consensus 281 ~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~id 358 (525)
+++..++++|.++. .|||+||||||++.+ +|...+ ....++.+++||+.||
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~p--kRe~aq-------------------------reMErRiVaQLlt~mD 318 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITP--KREEAQ-------------------------REMERRIVAQLLTSMD 318 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeeccccccc--chhhHH-------------------------HHHHHHHHHHHHHhhh
Confidence 36789999999886 699999999999975 553322 2345789999999999
Q ss_pred CCCCC--CCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 359 GLWSS--CGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 359 gl~s~--~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
++... .|..|+||++||+||.|||||+|+||||+.|.++.|+..+|..|++..+... .+...-++..|+..+ ||-
T Consensus 319 ~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l--rl~g~~d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 319 ELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGL--RLSGDFDFKQLAKLTPGFV 396 (802)
T ss_pred cccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC--CCCCCcCHHHHHhcCCCcc
Confidence 98654 3578999999999999999999999999999999999999999999988744 445455667777777 888
Q ss_pred HHHHHHHHHc----------------------CCC---------------------------------------------
Q 009791 436 PAQVAEQFMK----------------------SED--------------------------------------------- 448 (525)
Q Consensus 436 padi~~~l~~----------------------~~~--------------------------------------------- 448 (525)
+||+..++.. +++
T Consensus 397 GADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~ 476 (802)
T KOG0733|consen 397 GADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELL 476 (802)
T ss_pred chhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHh
Confidence 8887655421 000
Q ss_pred --HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCchhhhcchhhhhHhHHHhhhccccc
Q 009791 449 --ADVALAALIKLLKEKERNGSGDVDGDEDEINLDEVAILESKKLKTQDQIQDKGKET 504 (525)
Q Consensus 449 --~~~al~~l~~al~~~~~~~~~~~~~~~~~v~w~dIggl~~vK~~L~e~i~w~~k~~ 504 (525)
..+.+++|.+|+....|++++++....|.|+|+|||+|++++.+|+.+|.||.|+-
T Consensus 477 ~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~p 534 (802)
T KOG0733|consen 477 EGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRP 534 (802)
T ss_pred ccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCH
Confidence 11346799999999999999999999999999999999999999999999998875
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-44 Score=356.09 Aligned_cols=236 Identities=23% Similarity=0.332 Sum_probs=202.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.+..||++|+|.+++.++|.+.++.++.+|+.|.++|+.+|+|+|||||||||||+||+|+|++.+..|+.+..+++.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 455799999999999999999999999999999999999999999999999999999999999999999999988872
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
...-+|++|.-+ +.||||||||||++.. +|-+.+. +++..-++|+-+|||
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~--kR~d~~t----------------------~gDrEVQRTmleLL~ 280 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGA--KRFDSGT----------------------SGDREVQRTMLELLN 280 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhc--ccccCCC----------------------CchHHHHHHHHHHHH
Confidence 445577788666 4799999999999975 4433332 244567899999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.|||+... +++-||++||+++.|||||+||||||++|+||+|+.++|.+|++.|...- ......+++.++..+ ++
T Consensus 281 qlDGFD~~--~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM--~l~~dvd~e~la~~~~g~ 356 (406)
T COG1222 281 QLDGFDPR--GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM--NLADDVDLELLARLTEGF 356 (406)
T ss_pred hccCCCCC--CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc--cCccCcCHHHHHHhcCCC
Confidence 99999774 67999999999999999999999999999999999999999999998765 444556778888877 99
Q ss_pred CHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhcC
Q 009791 435 TPAQVAEQFMK-------SEDADVALAALIKLLKEKERNG 467 (525)
Q Consensus 435 tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~~ 467 (525)
|+|||..+|.. .+...+..++|.+|.++.....
T Consensus 357 sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 357 SGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred chHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 99999998864 2344567788888887766544
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-40 Score=350.09 Aligned_cols=233 Identities=22% Similarity=0.340 Sum_probs=202.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc---
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV--- 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l--- 280 (525)
-+..+|++++|.+++|++|.+.+..++++++.|.++|+.+|+|+|||||||||||++|+|+|++.+.+|+.+...++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ---CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 281 ---TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 281 ---~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
.++..++++|.++. .||||||||||++.. .|.+. . .+...+.+++||+
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~--~R~g~-~------------------------~~v~~RVlsqLLt 560 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAG--SRGGS-S------------------------SGVTDRVLSQLLT 560 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhh--ccCCC-c------------------------cchHHHHHHHHHH
Confidence 36788999999886 699999999999975 44321 1 2456789999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
+|||+... ..++||++||+|+.||+||+||||||..|++|.|+.++|.+|++.++... ......+++.|++.+ +|
T Consensus 561 EmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~vdl~~La~~T~g~ 636 (693)
T KOG0730|consen 561 EMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM--PFSEDVDLEELAQATEGY 636 (693)
T ss_pred Hccccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC--CCCccccHHHHHHHhccC
Confidence 99999764 56999999999999999999999999999999999999999999999876 333447889999988 99
Q ss_pred CHHHHHHHHHcC---------CCHHHHHHHHHHHHHHhhhcC
Q 009791 435 TPAQVAEQFMKS---------EDADVALAALIKLLKEKERNG 467 (525)
Q Consensus 435 tpadi~~~l~~~---------~~~~~al~~l~~al~~~~~~~ 467 (525)
|+|||.++|... +...+..+++.++++..+++-
T Consensus 637 SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 637 SGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred ChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccC
Confidence 999999988631 234456778888887776643
No 5
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-38 Score=329.49 Aligned_cols=228 Identities=24% Similarity=0.314 Sum_probs=191.8
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc------
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV------ 280 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l------ 280 (525)
.+|++|-|.++.|+++.+.+ .|+++|+.|.++|-..|+|+||.||||||||+||+|+|++.+.|||....++.
T Consensus 301 v~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred cccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 47999999999999998755 69999999999999999999999999999999999999999999999988776
Q ss_pred CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhc
Q 009791 281 TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFID 358 (525)
Q Consensus 281 ~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~id 358 (525)
.....+|.+|..++ .||||||||||++.. +|.... ....+.|+++||.+||
T Consensus 380 vGArRVRdLF~aAk~~APcIIFIDEiDavG~--kR~~~~-------------------------~~y~kqTlNQLLvEmD 432 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARAPCIIFIDEIDAVGG--KRNPSD-------------------------QHYAKQTLNQLLVEMD 432 (752)
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEechhhhcc--cCCccH-------------------------HHHHHHHHHHHHHHhc
Confidence 25689999998875 799999999999975 332211 1245789999999999
Q ss_pred CCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCHH
Q 009791 359 GLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITPA 437 (525)
Q Consensus 359 gl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpa 437 (525)
|+..+ +++|||++||.||.||+||+||||||+||.+|.|+...|.+|++.|+... .+.-..+..-+++.+ |||+|
T Consensus 433 GF~qN--eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARGT~GFsGA 508 (752)
T KOG0734|consen 433 GFKQN--EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARGTPGFSGA 508 (752)
T ss_pred CcCcC--CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccCCCCCchH
Confidence 99775 66999999999999999999999999999999999999999999999866 344444555688887 99999
Q ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHHHhhhc
Q 009791 438 QVAEQFMK-------SEDADVALAALIKLLKEKERN 466 (525)
Q Consensus 438 di~~~l~~-------~~~~~~al~~l~~al~~~~~~ 466 (525)
|+++++.. .....+.+++|..+-.+.-..
T Consensus 509 dLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG 544 (752)
T KOG0734|consen 509 DLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMG 544 (752)
T ss_pred HHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeec
Confidence 99987642 234456677776665554433
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-38 Score=330.28 Aligned_cols=211 Identities=20% Similarity=0.315 Sum_probs=182.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc----
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV---- 280 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l---- 280 (525)
+..+|++|++.++++.++...+..++++++.|+++|+..|.|+|||||||||||.||+|+||+.|.+|+.+...++
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 4469999999999999999999999999999999999999999999999999999999999999999999987776
Q ss_pred --CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 281 --TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 281 --~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
+++..+|.+|+.+. .||||||||||++++ .|.... ...+.+.+++||.+
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p--~R~~~~-------------------------s~~s~RvvNqLLtE 638 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVP--RRSDEG-------------------------SSVSSRVVNQLLTE 638 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCc--ccCCCC-------------------------chhHHHHHHHHHHH
Confidence 36788999998875 799999999999985 443322 34567899999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhh---cC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKT---IN 433 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~---~~ 433 (525)
|||+... .+|.||++||+||.+|||++||||||..+++++|+.++|..|++..............+++++++. .|
T Consensus 639 lDGl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~g 716 (802)
T KOG0733|consen 639 LDGLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEG 716 (802)
T ss_pred hcccccc--cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccC
Confidence 9999776 459999999999999999999999999999999999999999999988431122233445556554 38
Q ss_pred CCHHHHHHHHH
Q 009791 434 ITPAQVAEQFM 444 (525)
Q Consensus 434 ~tpadi~~~l~ 444 (525)
||+||++.++.
T Consensus 717 ftGADLaaLvr 727 (802)
T KOG0733|consen 717 FTGADLAALVR 727 (802)
T ss_pred CchhhHHHHHH
Confidence 99999998765
No 7
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-38 Score=332.90 Aligned_cols=266 Identities=24% Similarity=0.298 Sum_probs=235.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc----
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV---- 280 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l---- 280 (525)
++.+ ++++|...+-..+.+.+...+..+..|...|.++|+|+|+|||||||||.+++|+|++.+..++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 78999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred --CChhHHHHHHHHhC--C-CeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 281 --TRDSDLRTLLLSTG--N-RSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 281 --~~~~~L~~l~~~~~--~-~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
+++++||+.|..+. + |+||||||||.+++ +|.... ....++.++|+.
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p--~r~~~~--------------------------~~e~Rv~sqllt 310 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCP--KREGAD--------------------------DVESRVVSQLLT 310 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCC--cccccc--------------------------hHHHHHHHHHHH
Confidence 46789999999874 4 99999999999986 332221 145789999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
++||+.+. ..+||++|||+|+.|||+++| ||||..++++.|+..+|.+|++.+.... .+....+++.++..+ ||
T Consensus 311 L~dg~~~~--~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~--~~~~~~~l~~iA~~thGy 385 (693)
T KOG0730|consen 311 LLDGLKPD--AKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKM--NLLSDVDLEDIAVSTHGY 385 (693)
T ss_pred HHhhCcCc--CcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhc--CCcchhhHHHHHHHccch
Confidence 99999753 569999999999999999999 9999999999999999999999999877 444567888888887 99
Q ss_pred CHHHHHHHHHcCC--CHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCchhhhcchhhhhHhHHHhhhccccc
Q 009791 435 TPAQVAEQFMKSE--DADVALAALIKLLKEKERNGSGDVDGDEDEINLDEVAILESKKLKTQDQIQDKGKET 504 (525)
Q Consensus 435 tpadi~~~l~~~~--~~~~al~~l~~al~~~~~~~~~~~~~~~~~v~w~dIggl~~vK~~L~e~i~w~~k~~ 504 (525)
++||++.++.... .....++++..++....|++.++...+.|+|+|+||||+|++|++|+++|+||.|+-
T Consensus 386 vGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~p 457 (693)
T KOG0730|consen 386 VGADLAALCREASLQATRRTLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHP 457 (693)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhch
Confidence 9999998876421 122256789999999999999999999999999999999999999999999999876
No 8
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-36 Score=329.73 Aligned_cols=236 Identities=26% Similarity=0.369 Sum_probs=197.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc---
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV--- 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l--- 280 (525)
+.+.+|.+|+|.++.|++|.+.+ .|+++|+.|+++|...|+|+||+||||||||+||+|+|.+.|.||+.++.++.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 44478999999999999999976 59999999999999999999999999999999999999999999999998876
Q ss_pred ---CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 281 ---TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 281 ---~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
...+.++.+|..+. .||||||||||++.. .|.+... .+.+.....++++||.
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~--~r~G~~~---------------------~~~~~e~e~tlnQll~ 440 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGR--KRGGKGT---------------------GGGQDEREQTLNQLLV 440 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccc--ccccccc---------------------CCCChHHHHHHHHHHH
Confidence 24788999998875 699999999999864 3321111 1234566789999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
+|||+... .++|++++||+++.||+||+||||||++|+++.|+..+|.+|++.|+...... ....++..++..+ ||
T Consensus 441 emDgf~~~--~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf 517 (774)
T KOG0731|consen 441 EMDGFETS--KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGF 517 (774)
T ss_pred HhcCCcCC--CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCC
Confidence 99999775 66999999999999999999999999999999999999999999999876433 3345566677777 99
Q ss_pred CHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhc
Q 009791 435 TPAQVAEQFMK-------SEDADVALAALIKLLKEKERN 466 (525)
Q Consensus 435 tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~ 466 (525)
|+|||++++.. .....+...+|..+++.....
T Consensus 518 ~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 518 SGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred cHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcc
Confidence 99999988763 234456677788888754443
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-35 Score=314.90 Aligned_cols=211 Identities=22% Similarity=0.353 Sum_probs=174.6
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc-----
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV----- 280 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l----- 280 (525)
..+|++|+|.+++|.+|.+.+..++++++.|.. |...+.|+|||||||||||.||+|+|.++.+.|+.+...++
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 358999999999999999999999999998876 67778899999999999999999999999999999987776
Q ss_pred -CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhh
Q 009791 281 -TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFI 357 (525)
Q Consensus 281 -~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~i 357 (525)
+++.++|++|.++. +||||||||+|.+.+ .|...+ +.++...+.+|+||.+|
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP--~RG~sG-----------------------DSGGVMDRVVSQLLAEL 801 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDSLAP--NRGRSG-----------------------DSGGVMDRVVSQLLAEL 801 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEeccccccCc--cCCCCC-----------------------CccccHHHHHHHHHHHh
Confidence 47899999999885 699999999999986 443222 23467789999999999
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHH-HHHHHHHHhCCcCCCcccHHHHHHHHhhc--CC
Q 009791 358 DGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYG-FRLLAANYLGITDCEHKLVAEIETLLKTI--NI 434 (525)
Q Consensus 358 dgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~-r~~L~~~~l~~~~~~~~~~~~i~~l~~~~--~~ 434 (525)
||+.....+.++||++||+||.|||||+||||||+.++++.|...+ +..+++..-+.- ......++.++++.. .|
T Consensus 802 Dgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF--kLdedVdL~eiAk~cp~~~ 879 (953)
T KOG0736|consen 802 DGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF--KLDEDVDLVEIAKKCPPNM 879 (953)
T ss_pred hcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc--cCCCCcCHHHHHhhCCcCC
Confidence 9998656788999999999999999999999999999999986544 555555544332 222233455566655 89
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
|+||+-.+|-
T Consensus 880 TGADlYsLCS 889 (953)
T KOG0736|consen 880 TGADLYSLCS 889 (953)
T ss_pred chhHHHHHHH
Confidence 9999977653
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-35 Score=286.85 Aligned_cols=236 Identities=24% Similarity=0.327 Sum_probs=191.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.+..+|.+++|.+.+.++|.+.++.++.+|++|...|+.+|+|++|||+||||||.||+|+||.....|+.+-.+++.
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 455699999999999999999999999999999999999999999999999999999999999999999888777652
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
...-+|++|.-+ ..|||+||||||++.. +|-+.++ ++....++|+-.|||
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt--KRyds~S----------------------ggerEiQrtmLELLN 314 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT--KRYDSNS----------------------GGEREIQRTMLELLN 314 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhcc--ccccCCC----------------------ccHHHHHHHHHHHHH
Confidence 334567777655 4799999999999974 4433332 234566788899999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+||+.+. +.+-||++||+++.|||||+||||+|++|+|+.|+...++.||..+-... ...-...++.++... .+
T Consensus 315 QldGFdsr--gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M--tl~~dVnle~li~~kddl 390 (440)
T KOG0726|consen 315 QLDGFDSR--GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM--TLAEDVNLEELIMTKDDL 390 (440)
T ss_pred hccCcccc--CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeeccc--chhccccHHHHhhccccc
Confidence 99999885 56999999999999999999999999999999999999999998776543 233334566776655 89
Q ss_pred CHHHHHHHHHcC-------CCHHHHHHHHHHHHHHhhhcC
Q 009791 435 TPAQVAEQFMKS-------EDADVALAALIKLLKEKERNG 467 (525)
Q Consensus 435 tpadi~~~l~~~-------~~~~~al~~l~~al~~~~~~~ 467 (525)
|+|||..+|... ....+..++|.++.+..--..
T Consensus 391 SGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 391 SGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred ccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 999999887532 234455667777766554433
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=276.67 Aligned_cols=214 Identities=26% Similarity=0.377 Sum_probs=182.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc---
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV--- 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l--- 280 (525)
.+..++.+++|.+-+|++|.+.++.++...+.|+++|+.+|||+|||||||||||+|++|+|++....|+.+..++.
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 44468999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred ---CChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 281 ---TRDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 281 ---~~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
+...-+|.+|.-+ +.|+||||||||++.. +|-+.+. +.+..-++.+-.|||
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiat--krfdaqt----------------------gadrevqril~elln 284 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDAQT----------------------GADREVQRILIELLN 284 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhccccc----------------------cccHHHHHHHHHHHH
Confidence 2445678887655 4799999999999863 4433332 234566789999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.|||+... .++-||++||+.+.|||||+||||+|++|+||+|+.-+++-+|....... +.....+++.++..- .+
T Consensus 285 qmdgfdq~--~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm--~ls~~vdle~~v~rpdki 360 (408)
T KOG0727|consen 285 QMDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM--NLSDEVDLEDLVARPDKI 360 (408)
T ss_pred hccCcCcc--cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc--cCCcccCHHHHhcCcccc
Confidence 99999765 56999999999999999999999999999999999999999988877654 444455677776555 89
Q ss_pred CHHHHHHHHHc
Q 009791 435 TPAQVAEQFMK 445 (525)
Q Consensus 435 tpadi~~~l~~ 445 (525)
|+|||..+|..
T Consensus 361 s~adi~aicqe 371 (408)
T KOG0727|consen 361 SGADINAICQE 371 (408)
T ss_pred chhhHHHHHHH
Confidence 99999988764
No 12
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.7e-34 Score=298.36 Aligned_cols=234 Identities=25% Similarity=0.336 Sum_probs=191.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.+..+|++|+|.+.+|++|.+.+..++.+++.|..+|+++++|+|||||||||||++++++|++++.+++.+..+.+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 455799999999999999999999999999999999999999999999999999999999999999999998876542
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
+...++.+|..+ .+||||||||||+++. .|.+... +.......++..||+
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~--~r~~~~~----------------------~~d~~~~r~l~~LL~ 274 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--KRFDAQT----------------------GADREVQRILLELLN 274 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc--ccccccC----------------------CccHHHHHHHHHHHH
Confidence 345677777655 4799999999999874 3322111 112334578899999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+|++... .+++||+|||+++.||||++||||||.+|+|++|+.++|..|++.++... ......++..++..+ ||
T Consensus 275 ~ld~~~~~--~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~--~l~~dvd~~~la~~t~g~ 350 (398)
T PTZ00454 275 QMDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM--NLSEEVDLEDFVSRPEKI 350 (398)
T ss_pred HhhccCCC--CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC--CCCcccCHHHHHHHcCCC
Confidence 99998664 45899999999999999999999999999999999999999999998754 223334577777777 99
Q ss_pred CHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhh
Q 009791 435 TPAQVAEQFMK-------SEDADVALAALIKLLKEKER 465 (525)
Q Consensus 435 tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~ 465 (525)
|+|||..++.. .+...+..+++.+|++....
T Consensus 351 sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 351 SAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 99999987753 23345667778787777644
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=8.6e-34 Score=304.07 Aligned_cols=256 Identities=20% Similarity=0.271 Sum_probs=198.5
Q ss_pred HhhhHHHHHHHHHhhcccceEEEEecccCCCCCCCcceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCC
Q 009791 162 NSYLPHVIELAKDMKDKTRVLKMYTLHRVPDYDAIRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGR 241 (525)
Q Consensus 162 ~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~ 241 (525)
.+.++.++++.+.+..+...+.++ .+..+|++|+|.+.+|+++.+....|.. .+...|+
T Consensus 198 ~~~~~~i~~~k~q~~~~~~~le~~------------------~~~~~~~dvgGl~~lK~~l~~~~~~~~~---~~~~~gl 256 (489)
T CHL00195 198 ENSIPLILEEKKQIISQTEILEFY------------------SVNEKISDIGGLDNLKDWLKKRSTSFSK---QASNYGL 256 (489)
T ss_pred hhhHHHHHHHHHHHHhhhcccccc------------------CCCCCHHHhcCHHHHHHHHHHHHHHhhH---HHHhcCC
Confidence 345566777776665554444333 2345799999999999999987765543 3467899
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC------ChhHHHHHHHHh--CCCeEEEEeccccccCCCCC
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT------RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDR 313 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~------~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r 313 (525)
++++|+|||||||||||++|+|+|++++.+++.++++.+. ++..++++|..+ .+||||||||||.++. .+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~--~~ 334 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFS--NS 334 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc--cc
Confidence 9999999999999999999999999999999999987652 457888898754 4799999999998864 11
Q ss_pred CCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeE
Q 009791 314 RNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMH 393 (525)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~ 393 (525)
... ++.+.....++.||++|+.. ..+++||+|||+++.||||++||||||..
T Consensus 335 ~~~------------------------~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~allR~GRFD~~ 386 (489)
T CHL00195 335 ESK------------------------GDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLLPLEILRKGRFDEI 386 (489)
T ss_pred cCC------------------------CCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhCCHHHhCCCcCCeE
Confidence 111 12234567899999999863 34589999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCHHHHHHHHHc------CCCHHHHHHHHHHHHHHhhhc
Q 009791 394 IHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITPAQVAEQFMK------SEDADVALAALIKLLKEKERN 466 (525)
Q Consensus 394 I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpadi~~~l~~------~~~~~~al~~l~~al~~~~~~ 466 (525)
|+++.|+.++|.+|++.|+...........+++.+++.+ |||+|||.+.+.. ........++|.++++...|.
T Consensus 387 i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 387 FFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREFTTDDILLALKQFIPL 466 (489)
T ss_pred EEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC
Confidence 999999999999999999976421112245678888887 9999999887653 123345677888888888776
Q ss_pred CC
Q 009791 467 GS 468 (525)
Q Consensus 467 ~~ 468 (525)
+.
T Consensus 467 s~ 468 (489)
T CHL00195 467 AQ 468 (489)
T ss_pred cc
Confidence 54
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-34 Score=273.88 Aligned_cols=214 Identities=24% Similarity=0.345 Sum_probs=182.7
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
-+..+++-++|.+.+.++|.+.++.+.++|+.|..+|++-|+|+|||||||||||.|++|+|.+..+.|+.++.+++.
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999988872
Q ss_pred ----ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
...-+|++|..+. .|||||+||||.+.. .|...+. ++++.-++|.-.|||
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs--~r~e~~~----------------------ggdsevqrtmlelln 276 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS--SRVESGS----------------------GGDSEVQRTMLELLN 276 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeeccccccc--ccccCCC----------------------CccHHHHHHHHHHHH
Confidence 3456788887664 799999999999875 3332221 345567889999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+||+... .++-||++||+.+.|||||+||||+|++|+||.|+.++|.+|++.+-... +....-++..+++.. |-
T Consensus 277 qldgfeat--knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l~kiaekm~ga 352 (404)
T KOG0728|consen 277 QLDGFEAT--KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINLRKIAEKMPGA 352 (404)
T ss_pred hccccccc--cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCHHHHHHhCCCC
Confidence 99999775 56999999999999999999999999999999999999999999876544 333445566777776 99
Q ss_pred CHHHHHHHHHc
Q 009791 435 TPAQVAEQFMK 445 (525)
Q Consensus 435 tpadi~~~l~~ 445 (525)
|+|++..+|..
T Consensus 353 sgaevk~vcte 363 (404)
T KOG0728|consen 353 SGAEVKGVCTE 363 (404)
T ss_pred ccchhhhhhhh
Confidence 99999887753
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-34 Score=271.07 Aligned_cols=234 Identities=21% Similarity=0.284 Sum_probs=190.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc---
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV--- 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l--- 280 (525)
.+..++++++|.+.+.+++++.+..++.+++.|..+|+.+|+|+|+|||||||||.|++|.|...+..|..+-...+
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 45568999999999999999999999999999999999999999999999999999999999999988877765544
Q ss_pred --C-ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 281 --T-RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 281 --~-~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
. ...-+|..|.-+ ..|+||||||+|++.. +|-+... .++..-++|.-.|||
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt--KRfDSek----------------------~GDREVQRTMLELLN 300 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSEK----------------------AGDREVQRTMLELLN 300 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhcc--ccccccc----------------------cccHHHHHHHHHHHH
Confidence 1 234567777655 4799999999999964 4433322 234566789999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+||+.+. +.+-||++||+.+.|||||+|.||+|++|+||.|+.++|..|++.+-... .......+++|++.+ +|
T Consensus 301 QLDGFss~--~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM--nv~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 301 QLDGFSSD--DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM--NVSDDVNFEELARSTDDF 376 (424)
T ss_pred hhcCCCCc--cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc--CCCCCCCHHHHhhccccc
Confidence 99999775 77999999999999999999999999999999999999999999887654 444445677788887 89
Q ss_pred CHHHHHHHHH-------cCCCHHHHHHHHHHHHHHhhh
Q 009791 435 TPAQVAEQFM-------KSEDADVALAALIKLLKEKER 465 (525)
Q Consensus 435 tpadi~~~l~-------~~~~~~~al~~l~~al~~~~~ 465 (525)
.+|+...+|. +++..++..+++.+.+.+...
T Consensus 377 NGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 377 NGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred CchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHH
Confidence 9998766554 344555666666666555443
No 16
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=282.97 Aligned_cols=209 Identities=25% Similarity=0.343 Sum_probs=175.1
Q ss_pred cCC-CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC
Q 009791 204 EHP-ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR 282 (525)
Q Consensus 204 ~~~-~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~ 282 (525)
.+| ..|++|+|..+.|+-|.+.+..++.-|++|+.+-.||+ |+|++||||||||+||+|+|.+++..|+.++.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWk-gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccc-eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 344 58999999999999999999999999999999999996 9999999999999999999999999999999888742
Q ss_pred -----hhHHHHHHHHhC---CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 283 -----DSDLRTLLLSTG---NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 283 -----~~~L~~l~~~~~---~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
.+.|.++|.++. .||+|||||||.++. .|.+.. +...+++.-+.||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs--~RG~s~------------------------EHEaSRRvKsELL 337 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS--QRGGSS------------------------EHEASRRVKSELL 337 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHh--cCCCcc------------------------chhHHHHHHHHHH
Confidence 344555555543 799999999999985 333322 2345678889999
Q ss_pred hhhcCCCCCCCCc---eEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhh
Q 009791 355 NFIDGLWSSCGDE---RIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKT 431 (525)
Q Consensus 355 n~idgl~s~~~~~---~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~ 431 (525)
..|||+.... ++ |+|+++||.|++||+||+| ||.+.|++|+|+.++|+.|++..|... .......++.+++.
T Consensus 338 vQmDG~~~t~-e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~--~~~~~~~~~~lae~ 412 (491)
T KOG0738|consen 338 VQMDGVQGTL-ENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSV--ELDDPVNLEDLAER 412 (491)
T ss_pred HHhhcccccc-ccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccc--cCCCCccHHHHHHH
Confidence 9999986543 33 7788899999999999999 999999999999999999999999865 33333456667777
Q ss_pred c-CCCHHHHHHHHH
Q 009791 432 I-NITPAQVAEQFM 444 (525)
Q Consensus 432 ~-~~tpadi~~~l~ 444 (525)
. |||++||..+|.
T Consensus 413 ~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 413 SEGYSGADITNVCR 426 (491)
T ss_pred hcCCChHHHHHHHH
Confidence 7 999999998775
No 17
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-33 Score=300.22 Aligned_cols=232 Identities=25% Similarity=0.369 Sum_probs=192.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc----
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV---- 280 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l---- 280 (525)
...+|.+++|.++.|+++.+.+ .|+++|..|..+|...|+|+||+||||||||+||+|+|++.+.|++.++.++.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 3468999999999999999866 59999999999999999999999999999999999999999999999998875
Q ss_pred --CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 281 --TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 281 --~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
...+..|.+|.++. .||||||||||++.. .|.... .+++.....|+++||.+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr--~Rg~g~----------------------GggnderEQTLNQlLvE 279 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR--QRGAGL----------------------GGGNDEREQTLNQLLVE 279 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhccc--ccCCCC----------------------CCCchHHHHHHHHHHhh
Confidence 36789999999986 599999999999864 332111 13345567899999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
|||+..+ ++++|+++||+|+-|||||+||||||++|.++.|+...|++|++.+.... ......++..+++.+ |++
T Consensus 280 mDGF~~~--~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl~~iAr~tpGfs 355 (596)
T COG0465 280 MDGFGGN--EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK--PLAEDVDLKKIARGTPGFS 355 (596)
T ss_pred hccCCCC--CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC--CCCCcCCHHHHhhhCCCcc
Confidence 9999754 66999999999999999999999999999999999999999999888765 333344555677777 999
Q ss_pred HHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhh
Q 009791 436 PAQVAEQFMK-------SEDADVALAALIKLLKEKER 465 (525)
Q Consensus 436 padi~~~l~~-------~~~~~~al~~l~~al~~~~~ 465 (525)
+||+++++.. .....+...++.++....-.
T Consensus 356 GAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~ 392 (596)
T COG0465 356 GADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIA 392 (596)
T ss_pred cchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhc
Confidence 9999988742 23334455566666655543
No 18
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.8e-32 Score=287.26 Aligned_cols=239 Identities=23% Similarity=0.325 Sum_probs=195.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.+..+|++|+|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 344689999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ----ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
....++.+|..+. .||||||||||.++. .|.+... .+......++..||+
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~--~r~~~~~----------------------~~~~~~~~~l~~lL~ 260 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAA--KRTDSGT----------------------SGDREVQRTLMQLLA 260 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhc--ccccCCC----------------------CccHHHHHHHHHHHH
Confidence 3456777777653 699999999999874 3322211 112234567889999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+|++... .+++||+|||+++.+|+||+||||||..|+|+.|+.++|.+|++.++.... .....++..++..+ |+
T Consensus 261 ~ld~~~~~--~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~--~~~~~~~~~la~~t~g~ 336 (389)
T PRK03992 261 EMDGFDPR--GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN--LADDVDLEELAELTEGA 336 (389)
T ss_pred hccccCCC--CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC--CCCcCCHHHHHHHcCCC
Confidence 99998653 468999999999999999999999999999999999999999999987542 22234567777777 99
Q ss_pred CHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhcCCCC
Q 009791 435 TPAQVAEQFMK-------SEDADVALAALIKLLKEKERNGSGD 470 (525)
Q Consensus 435 tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~~~~~ 470 (525)
+++||..++.. .....+..++|.+|++...+.....
T Consensus 337 sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 337 SGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 99999987753 2334467889999999888766544
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.9e-32 Score=310.36 Aligned_cols=269 Identities=22% Similarity=0.309 Sum_probs=223.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC---
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT--- 281 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~--- 281 (525)
+..+|++|+|.++.++.|.+.+..++.+++.|..+|+.+++|+|||||||||||+|+++||++++.+++.+++.++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999877652
Q ss_pred ---ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 282 ---RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 282 ---~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
....++.+|..+ ..|+||||||||.++. .|... .......+++.|++.
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~--~r~~~-------------------------~~~~~~~~~~~Ll~~ 305 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAP--KREEV-------------------------TGEVEKRVVAQLLTL 305 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc--cccCC-------------------------cchHHHHHHHHHHHH
Confidence 245688888765 4689999999999874 22211 112335678999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
||++... ..++||+|||+++.|||+++|+||||.+|+++.|+.++|.+|++.+.... ......+++.++..+ ||+
T Consensus 306 ld~l~~~--~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~--~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 306 MDGLKGR--GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM--PLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred hhccccC--CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC--CCccccCHHHHHHhCCCCC
Confidence 9998654 45889999999999999999999999999999999999999999887644 222234566777777 999
Q ss_pred HHHHHHHHHc-------------C-------------CCHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCchhhhcchhh
Q 009791 436 PAQVAEQFMK-------------S-------------EDADVALAALIKLLKEKERNGSGDVDGDEDEINLDEVAILESK 489 (525)
Q Consensus 436 padi~~~l~~-------------~-------------~~~~~al~~l~~al~~~~~~~~~~~~~~~~~v~w~dIggl~~v 489 (525)
++|+..++.. . ....+..+++.++++...|+.++....+.|.++|+||||++++
T Consensus 382 gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~ 461 (733)
T TIGR01243 382 GADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEV 461 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHH
Confidence 9998765431 0 0122456788999999999998888888999999999999999
Q ss_pred hhHhHHHhhhccccc
Q 009791 490 KLKTQDQIQDKGKET 504 (525)
Q Consensus 490 K~~L~e~i~w~~k~~ 504 (525)
|+.|++.++|+.+..
T Consensus 462 k~~l~~~v~~~~~~~ 476 (733)
T TIGR01243 462 KQELREAVEWPLKHP 476 (733)
T ss_pred HHHHHHHHHhhhhCH
Confidence 999999999997754
No 20
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-32 Score=289.50 Aligned_cols=232 Identities=22% Similarity=0.321 Sum_probs=197.4
Q ss_pred cceeccccCC--CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 197 RWDSVKLEHP--ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 197 ~w~~v~~~~~--~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
..+.+.+..+ ..|++++|..+.|+.+.+.+..+.+.+..|...+++.+.|+|||||||||||.||.|+|...++.|+.
T Consensus 652 aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis 731 (952)
T KOG0735|consen 652 ALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS 731 (952)
T ss_pred HhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE
Confidence 4555555444 47999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCc------CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchh
Q 009791 275 LQLGNV------TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQH 346 (525)
Q Consensus 275 l~~~~l------~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
+...++ .++..+|.+|..+. .||||||||+|.+.+ +|...+ .+..
T Consensus 732 vKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP--kRGhDs-------------------------TGVT 784 (952)
T KOG0735|consen 732 VKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAP--KRGHDS-------------------------TGVT 784 (952)
T ss_pred ecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCc--ccCCCC-------------------------CCch
Confidence 987776 36789999998875 799999999999975 443222 2456
Q ss_pred HHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHH
Q 009791 347 MLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIE 426 (525)
Q Consensus 347 ~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~ 426 (525)
.+.+++||+.|||.-.- ++|.|+++|.+||.+||||+||||+|++++-+.|++.+|.+|++..-... ..+.+.+++
T Consensus 785 DRVVNQlLTelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~--~~~~~vdl~ 860 (952)
T KOG0735|consen 785 DRVVNQLLTELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL--LKDTDVDLE 860 (952)
T ss_pred HHHHHHHHHhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc--CCccccchH
Confidence 78999999999998664 56999999999999999999999999999999999999999999776644 455567888
Q ss_pred HHHhhc-CCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 009791 427 TLLKTI-NITPAQVAEQFMKSEDADVALAALIKLLKEKE 464 (525)
Q Consensus 427 ~l~~~~-~~tpadi~~~l~~~~~~~~al~~l~~al~~~~ 464 (525)
.++..+ |||+||++.+|.. .-+..+.++|++..
T Consensus 861 ~~a~~T~g~tgADlq~ll~~-----A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 861 CLAQKTDGFTGADLQSLLYN-----AQLAAVHEILKRED 894 (952)
T ss_pred HHhhhcCCCchhhHHHHHHH-----HHHHHHHHHHHhcC
Confidence 888888 9999999998763 33555666666555
No 21
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=5.8e-32 Score=289.73 Aligned_cols=183 Identities=23% Similarity=0.390 Sum_probs=152.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc----------eE
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD----------VF 273 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~----------i~ 273 (525)
.++.+|++|+|.++.+++|.+.+..++.+++.|...|+++++|+|||||||||||++++|+|++++.+ ++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 34579999999999999999999999999999999999999999999999999999999999999765 23
Q ss_pred EEecCCc------CChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCC
Q 009791 274 DLQLGNV------TRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAG 341 (525)
Q Consensus 274 ~l~~~~l------~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (525)
.+...++ .++..++.+|..+. .||||||||||+++. .|.....
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~--~R~~~~s----------------------- 310 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFR--TRGSGVS----------------------- 310 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhc--ccCCCcc-----------------------
Confidence 3333332 13456777776542 599999999999974 3322111
Q ss_pred CCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 342 GKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 342 ~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
......++++||++|||+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.++|++|++.|+..
T Consensus 311 -~d~e~~il~~LL~~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 311 -SDVETTVVPQLLSELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred -chHHHHHHHHHHHHhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 122356789999999999765 4699999999999999999999999999999999999999999999864
No 22
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.5e-32 Score=259.70 Aligned_cols=220 Identities=24% Similarity=0.298 Sum_probs=179.7
Q ss_pred ceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 198 WDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 198 w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
...|.-.+..|+.+++|..++.+.|.+.++.++.+|+.|-.+|+.+|+|+|||||||||||.+++|+||..+..|+.+-.
T Consensus 165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvig 244 (435)
T KOG0729|consen 165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIG 244 (435)
T ss_pred EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehh
Confidence 34455566689999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCcC------ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHH
Q 009791 278 GNVT------RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLT 349 (525)
Q Consensus 278 ~~l~------~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (525)
+++. ...-+|++|..+. .-|||||||||++.+ .|-+.. .+++..-++|
T Consensus 245 selvqkyvgegarmvrelf~martkkaciiffdeidaigg--arfddg----------------------~ggdnevqrt 300 (435)
T KOG0729|consen 245 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGG--ARFDDG----------------------AGGDNEVQRT 300 (435)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccC--ccccCC----------------------CCCcHHHHHH
Confidence 7762 3455778887664 579999999999975 232221 1334566789
Q ss_pred HHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCc-ccHHHHHHH
Q 009791 350 LSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEH-KLVAEIETL 428 (525)
Q Consensus 350 ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~-~~~~~i~~l 428 (525)
.-.|+|.+||+... +++-|+++||+|+.|||||+||||+|++++|++|+.+.|..|++.+.....++. ..++-+..|
T Consensus 301 mleli~qldgfdpr--gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarl 378 (435)
T KOG0729|consen 301 MLELINQLDGFDPR--GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARL 378 (435)
T ss_pred HHHHHHhccCCCCC--CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhh
Confidence 99999999999764 568999999999999999999999999999999999999999987765432111 223334444
Q ss_pred HhhcCCCHHHHHHHHHc
Q 009791 429 LKTINITPAQVAEQFMK 445 (525)
Q Consensus 429 ~~~~~~tpadi~~~l~~ 445 (525)
+. +-|+|+|..+|..
T Consensus 379 cp--nstgaeirsvcte 393 (435)
T KOG0729|consen 379 CP--NSTGAEIRSVCTE 393 (435)
T ss_pred CC--CCcchHHHHHHHH
Confidence 42 6788999888764
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.98 E-value=7.8e-32 Score=285.06 Aligned_cols=234 Identities=24% Similarity=0.321 Sum_probs=188.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.++.+|++|+|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+|+|++++.+++.+..+++.
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 455799999999999999999999999999999999999999999999999999999999999999999999877763
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
+...++.+|..+ ..||||||||||+++. .|..... ++......++..||+
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~--kR~~~~s----------------------gg~~e~qr~ll~LL~ 312 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT--KRYDATS----------------------GGEKEIQRTMLELLN 312 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc--cCCCCCC----------------------cccHHHHHHHHHHHH
Confidence 234567777655 4799999999999874 3322111 112334567889999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+||+... .++.||+|||+++.||||++||||||++|+|+.|+.++|.+|++.++... ......+++.++..+ ++
T Consensus 313 ~Ldg~~~~--~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~--~l~~dvdl~~la~~t~g~ 388 (438)
T PTZ00361 313 QLDGFDSR--GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM--TLAEDVDLEEFIMAKDEL 388 (438)
T ss_pred HHhhhccc--CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC--CCCcCcCHHHHHHhcCCC
Confidence 99998654 45899999999999999999999999999999999999999999998654 222334567777766 99
Q ss_pred CHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhh
Q 009791 435 TPAQVAEQFMK-------SEDADVALAALIKLLKEKER 465 (525)
Q Consensus 435 tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~ 465 (525)
|+|||..+|.. .....+..+++.+|++....
T Consensus 389 sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 389 SGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence 99999987652 12234556666666666533
No 24
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.98 E-value=1.2e-31 Score=291.28 Aligned_cols=234 Identities=24% Similarity=0.376 Sum_probs=191.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.+..+|++++|.++.|+++.+.+ .++..++.|...|..+++|+|||||||||||++++|+|++++.+++.++++++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIV-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 45579999999999999999755 478999999999999999999999999999999999999999999999887652
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
+...++.+|..+ ..||||||||||.++. .|..... +.......++++||+
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~--~r~~~~~----------------------~~~~~~~~~~~~lL~ 183 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR--QRGAGLG----------------------GGNDEREQTLNQLLV 183 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh--ccccCcC----------------------CccHHHHHHHHHHHh
Confidence 456788999876 4699999999999974 2221110 112234578899999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.||++... .+++||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++... ......++..++..+ |+
T Consensus 184 ~~d~~~~~--~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~G~ 259 (495)
T TIGR01241 184 EMDGFGTN--TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDLKAVARRTPGF 259 (495)
T ss_pred hhccccCC--CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC--CCCcchhHHHHHHhCCCC
Confidence 99998664 45999999999999999999999999999999999999999999998755 233345677888877 99
Q ss_pred CHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhc
Q 009791 435 TPAQVAEQFMK-------SEDADVALAALIKLLKEKERN 466 (525)
Q Consensus 435 tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~ 466 (525)
|++||..++.. .....+..++|.+++......
T Consensus 260 sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 260 SGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Confidence 99999887642 233446778888888877543
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2.4e-31 Score=301.47 Aligned_cols=209 Identities=21% Similarity=0.311 Sum_probs=179.9
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc-----
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV----- 280 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l----- 280 (525)
..+|++++|.++.|+.|.+.+..++..++.|.++|..+++|+|||||||||||++++|+|++++.+++.++++++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV 528 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence 458999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhh
Q 009791 281 -TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFI 357 (525)
Q Consensus 281 -~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~i 357 (525)
.++..++.+|..+. .||||||||||.+++ .|.... ........+++||+.|
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~--~r~~~~------------------------~~~~~~~~~~~lL~~l 582 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAP--ARGARF------------------------DTSVTDRIVNQLLTEM 582 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhc--cCCCCC------------------------CccHHHHHHHHHHHHh
Confidence 24577999998764 699999999999975 332111 1223467899999999
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCH
Q 009791 358 DGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITP 436 (525)
Q Consensus 358 dgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tp 436 (525)
||+... .+++||+|||+|+.||||++||||||.+|++++|+.++|.+|++.++... ......+++.+++.+ |||+
T Consensus 583 dg~~~~--~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~--~~~~~~~l~~la~~t~g~sg 658 (733)
T TIGR01243 583 DGIQEL--SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM--PLAEDVDLEELAEMTEGYTG 658 (733)
T ss_pred hcccCC--CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC--CCCccCCHHHHHHHcCCCCH
Confidence 998654 56999999999999999999999999999999999999999999888755 333445677888877 9999
Q ss_pred HHHHHHHH
Q 009791 437 AQVAEQFM 444 (525)
Q Consensus 437 adi~~~l~ 444 (525)
|||..++.
T Consensus 659 adi~~~~~ 666 (733)
T TIGR01243 659 ADIEAVCR 666 (733)
T ss_pred HHHHHHHH
Confidence 99988664
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-31 Score=286.11 Aligned_cols=234 Identities=24% Similarity=0.366 Sum_probs=196.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.+..+|++++|..+.|+.+.+.+..++..++.|...|+..++|+|||||||||||+|++|+|++++.+|+.++.+++.
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 334699999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ----ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
++..++++|..+. +||||||||||.++. .|.... .....+.+++||.
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~--~r~~~~-------------------------~~~~~r~~~~lL~ 368 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLAS--GRGPSE-------------------------DGSGRRVVGQLLT 368 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhc--cCCCCC-------------------------chHHHHHHHHHHH
Confidence 5688999998875 799999999999975 332211 1222689999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
++||+... .+++||+|||+|+.+|||++||||||..|+++.|+.++|..+++.++...........+++.+++.+ ++
T Consensus 369 ~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~ 446 (494)
T COG0464 369 ELDGIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGY 446 (494)
T ss_pred HhcCCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCC
Confidence 99999665 5699999999999999999999999999999999999999999999985421112345666777766 89
Q ss_pred CHHHHHHHHHc-------CC-CHHHHHHHHHHHHHHhhhc
Q 009791 435 TPAQVAEQFMK-------SE-DADVALAALIKLLKEKERN 466 (525)
Q Consensus 435 tpadi~~~l~~-------~~-~~~~al~~l~~al~~~~~~ 466 (525)
|++||..++.. .. ...+.++++.++++..+|+
T Consensus 447 sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 447 SGADIAALVREAALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 99999988753 11 3357788888888886654
No 27
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=3.1e-31 Score=253.98 Aligned_cols=225 Identities=21% Similarity=0.305 Sum_probs=184.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC--
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR-- 282 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~-- 282 (525)
...+||+|+|+++.|+.-. .+..|+.+|+.|..+ .|+.+|||||||||||++|+|+|++.+.+++.+..+++..
T Consensus 116 ~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 4568999999999988654 566799999877665 5789999999999999999999999999999999888742
Q ss_pred ----hhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 283 ----DSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 283 ----~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
...+++++..+. .|||+||||+|++.- +|+-+. -.+.-...++.||+.
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQe------------------------lRGDVsEiVNALLTe 245 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQE------------------------LRGDVSEIVNALLTE 245 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHH------------------------hcccHHHHHHHHHHh
Confidence 367888888775 799999999999852 332211 123445689999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
|||+... ++++.|++||+|+.||||++. ||...|+|.+|+.++|..|++.|...- ..+....++.++..+ |+|
T Consensus 246 lDgi~en--eGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 246 LDGIKEN--EGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKF--PLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred ccCcccC--CceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhC--CCccccCHHHHHHHhCCCC
Confidence 9999864 669999999999999999999 999999999999999999999999876 556666688888887 999
Q ss_pred HHHHHHHHHc-------CC-CHHHHHHHHHHHHHHhhh
Q 009791 436 PAQVAEQFMK-------SE-DADVALAALIKLLKEKER 465 (525)
Q Consensus 436 padi~~~l~~-------~~-~~~~al~~l~~al~~~~~ 465 (525)
+.||.+-+++ .+ .-.+.-+++..+++...+
T Consensus 320 gRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k~r~ 357 (368)
T COG1223 320 GRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKERK 357 (368)
T ss_pred chhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhhcc
Confidence 9999987764 12 233556788888886443
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=2.4e-30 Score=285.43 Aligned_cols=232 Identities=25% Similarity=0.359 Sum_probs=189.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
....+|++|+|.++.|+++.+. ..|++.++.|..+|...++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~ei-v~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEV-VSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHH-HHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3456999999999999998765 5678999999999999999999999999999999999999999999999987652
Q ss_pred ----ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
....++.+|..+. .||||||||||+++. .|..... +.......+++.||+
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~--~r~~~~~----------------------~~~~e~~~~L~~LL~ 311 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR--QRGAGIG----------------------GGNDEREQTLNQLLT 311 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh--cccCCCC----------------------CCcHHHHHHHHHHHh
Confidence 3456888887764 699999999999864 2221110 122344678999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+||+... .+++||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++... ......++..++..+ |+
T Consensus 312 ~~dg~~~~--~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 312 EMDGFKGN--KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGF 387 (638)
T ss_pred hhccccCC--CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCC
Confidence 99998664 45999999999999999999999999999999999999999999999764 334455677888877 99
Q ss_pred CHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhh
Q 009791 435 TPAQVAEQFMK-------SEDADVALAALIKLLKEKE 464 (525)
Q Consensus 435 tpadi~~~l~~-------~~~~~~al~~l~~al~~~~ 464 (525)
+++||..++.. .....+..+++.+++....
T Consensus 388 sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 388 SGADLANLLNEAAILTARRKKATITMKEIDTAIDRVI 424 (638)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Confidence 99999877642 2334466778888887663
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.5e-31 Score=254.96 Aligned_cols=202 Identities=23% Similarity=0.329 Sum_probs=172.7
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC----
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT---- 281 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~---- 281 (525)
...|++|+|.+..|+.|.+.+..+++.|++|..-.+|| +|+|||||||||||.||+|+|.+.+-.|+.++-+++.
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 35789999999999999999999999999998766777 5999999999999999999999999999999988873
Q ss_pred --ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhh
Q 009791 282 --RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFI 357 (525)
Q Consensus 282 --~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~i 357 (525)
++.-++.+|..+ ..||||||||||.+|+ .| +.+ .+..+.++-..||..|
T Consensus 208 GESEkLVknLFemARe~kPSIIFiDEiDslcg--~r-~en------------------------EseasRRIKTEfLVQM 260 (439)
T KOG0739|consen 208 GESEKLVKNLFEMARENKPSIIFIDEIDSLCG--SR-SEN------------------------ESEASRRIKTEFLVQM 260 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEeehhhhhcc--CC-CCC------------------------chHHHHHHHHHHHHhh
Confidence 445566677655 4799999999998875 22 222 1234566778899999
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCccc-HHHHHHHHhhc-CCC
Q 009791 358 DGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKL-VAEIETLLKTI-NIT 435 (525)
Q Consensus 358 dgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~-~~~i~~l~~~~-~~t 435 (525)
.|+-.. .++++|+++||-|+.||.|++| ||++.|++|+|...+|..+|+.+++.. .|.+ ..++..|.+.+ |||
T Consensus 261 qGVG~d-~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 261 QGVGND-NDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred hccccC-CCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCC
Confidence 998553 5679999999999999999999 999999999999999999999999987 4444 67899999988 999
Q ss_pred HHHHH
Q 009791 436 PAQVA 440 (525)
Q Consensus 436 padi~ 440 (525)
++||.
T Consensus 336 GsDis 340 (439)
T KOG0739|consen 336 GSDIS 340 (439)
T ss_pred cCceE
Confidence 99985
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=4.5e-29 Score=261.29 Aligned_cols=213 Identities=24% Similarity=0.321 Sum_probs=172.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.+..+|++++|.++.+++|.+.+..++.+++.|..+|+.+++|+|||||||||||++++++|++++.+++.+..+.+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 455689999999999999999999999999999999999999999999999999999999999999999988766542
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
....++.+|..+ ..|+||||||||.++. .|.+... +.......++..+++
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~--~~~~~~~----------------------~~~~~~~~~l~~ll~ 251 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA--KRTDSGT----------------------SGDREVQRTLMQLLA 251 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc--ccccCCC----------------------CccHHHHHHHHHHHH
Confidence 123456666554 3699999999999864 2222111 112334567889999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+|++... .++.||+|||+++.+|++++||||||..|+|+.|+.++|.+|++.++.... .....++..++..+ |+
T Consensus 252 ~ld~~~~~--~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~--l~~~~~~~~la~~t~g~ 327 (364)
T TIGR01242 252 ELDGFDPR--GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK--LAEDVDLEAIAKMTEGA 327 (364)
T ss_pred HhhCCCCC--CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC--CCccCCHHHHHHHcCCC
Confidence 99987543 458999999999999999999999999999999999999999999886542 22223466777776 99
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
+++||..++.
T Consensus 328 sg~dl~~l~~ 337 (364)
T TIGR01242 328 SGADLKAICT 337 (364)
T ss_pred CHHHHHHHHH
Confidence 9999987764
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7e-30 Score=250.17 Aligned_cols=230 Identities=24% Similarity=0.339 Sum_probs=180.4
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC-----
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR----- 282 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~----- 282 (525)
+|+.+.|.-++..++++-++.++.+++.|.++|+.+|.|+|||||||||||.+++++|..++.+++.+..+.+.+
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999888753
Q ss_pred -hhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC
Q 009791 283 -DSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG 359 (525)
Q Consensus 283 -~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg 359 (525)
..-+|+.|..+. .|||||+||||++.+ .|..+.. ..+..-+.||..|+|.|||
T Consensus 210 saRlIRemf~yA~~~~pciifmdeiDAigG--Rr~se~T----------------------s~dreiqrTLMeLlnqmdg 265 (388)
T KOG0651|consen 210 SARLIRDMFRYAREVIPCIIFMDEIDAIGG--RRFSEGT----------------------SSDREIQRTLMELLNQMDG 265 (388)
T ss_pred HHHHHHHHHHHHhhhCceEEeehhhhhhcc--EEecccc----------------------chhHHHHHHHHHHHHhhcc
Confidence 345777887775 699999999999975 2222211 1234567899999999999
Q ss_pred CCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCHHH
Q 009791 360 LWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITPAQ 438 (525)
Q Consensus 360 l~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpad 438 (525)
+... ..|-+|+|||+|+.|||||+||||+|+.+++|.|+...|..+++.+-..-. .|-. -+-+++++-. +|.++|
T Consensus 266 fd~l--~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~-~~Ge-id~eaivK~~d~f~gad 341 (388)
T KOG0651|consen 266 FDTL--HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPID-FHGE-IDDEAILKLVDGFNGAD 341 (388)
T ss_pred chhc--ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccc-cccc-ccHHHHHHHHhccChHH
Confidence 9765 558999999999999999999999999999999999999997775543221 1110 1123344433 788888
Q ss_pred HHHHHHcC-------CCHHHHHHHHHHHHHHhhh
Q 009791 439 VAEQFMKS-------EDADVALAALIKLLKEKER 465 (525)
Q Consensus 439 i~~~l~~~-------~~~~~al~~l~~al~~~~~ 465 (525)
+...+... +.-.+-.+++..++.+...
T Consensus 342 ~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 342 LRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQAD 375 (388)
T ss_pred HhhhcccccccccchhhHHHhHHHHHHHHHHHHH
Confidence 77766532 2233445666666655443
No 32
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-29 Score=253.03 Aligned_cols=209 Identities=21% Similarity=0.313 Sum_probs=177.8
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhC-CCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC--
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVG-RAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR-- 282 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~-- 282 (525)
..+|++++|.+.+|+.+.+.+..++..+++|...+ ..+++|+|||||||||||++|+|+|.+.|.+++.+.++.+.+
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 35899999999999999999999999999998544 357799999999999999999999999999999999998853
Q ss_pred ----hhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 283 ----DSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 283 ----~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
+.-++.+|.-++ +||||||||||.++. .| ... +.......-++|...
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~--~R-~s~------------------------dHEa~a~mK~eFM~~ 220 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLG--QR-RST------------------------DHEATAMMKNEFMAL 220 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHh--hc-ccc------------------------hHHHHHHHHHHHHHH
Confidence 344555565554 799999999999875 33 221 122345566889999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
+||+.+..+..++|+++||+|.+||.|++| ||...++++.|+..+|++|++-+|... ......++.++++.+ |||
T Consensus 221 WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e--~~e~~vD~~~iA~~t~GyS 296 (386)
T KOG0737|consen 221 WDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE--KLEDDVDLDEIAQMTEGYS 296 (386)
T ss_pred hccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc--ccCcccCHHHHHHhcCCCc
Confidence 999998877779999999999999999999 999999999999999999999999877 444556788888888 999
Q ss_pred HHHHHHHHHc
Q 009791 436 PAQVAEQFMK 445 (525)
Q Consensus 436 padi~~~l~~ 445 (525)
+.||.++|..
T Consensus 297 GSDLkelC~~ 306 (386)
T KOG0737|consen 297 GSDLKELCRL 306 (386)
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=2.4e-29 Score=291.16 Aligned_cols=202 Identities=16% Similarity=0.133 Sum_probs=154.4
Q ss_pred hHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC-----------------------------
Q 009791 232 RKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR----------------------------- 282 (525)
Q Consensus 232 ~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~----------------------------- 282 (525)
.+..+.++|..+|+|+||+||||||||+||+|+|++.++|++.++++++..
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 455678899999999999999999999999999999999999998766531
Q ss_pred --------------------hhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccC
Q 009791 283 --------------------DSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFA 340 (525)
Q Consensus 283 --------------------~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (525)
...++.+|..+ .+||||||||||+++..
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~------------------------------ 1747 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN------------------------------ 1747 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC------------------------------
Confidence 01256677666 47999999999998530
Q ss_pred CCCchhHHHHHHHhhhhcCCCCC-CCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCC-
Q 009791 341 GGKGQHMLTLSGLLNFIDGLWSS-CGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCE- 418 (525)
Q Consensus 341 ~~~~~~~~~ls~LLn~idgl~s~-~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~- 418 (525)
.....++++||+.|||.... ...+++||+|||+|+.|||||+||||||++|+++.|+..+|++++..++...+..
T Consensus 1748 ---ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L 1824 (2281)
T CHL00206 1748 ---ESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHL 1824 (2281)
T ss_pred ---ccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCC
Confidence 01134689999999987432 2356999999999999999999999999999999999999999887654322101
Q ss_pred cccHHHHHHHHhhc-CCCHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhc
Q 009791 419 HKLVAEIETLLKTI-NITPAQVAEQFMK-------SEDADVALAALIKLLKEKERN 466 (525)
Q Consensus 419 ~~~~~~i~~l~~~~-~~tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~ 466 (525)
.....+++.++..+ |+|+||++.++-. .....+..+++..|+.+....
T Consensus 1825 ~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1825 EKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred CcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 11123567788888 9999999987642 233334566777777766544
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=3.2e-28 Score=246.92 Aligned_cols=168 Identities=17% Similarity=0.136 Sum_probs=135.0
Q ss_pred HHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC------ChhHHHHHHHHhC-------CCeEEE
Q 009791 234 EFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT------RDSDLRTLLLSTG-------NRSILV 300 (525)
Q Consensus 234 ~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~------~~~~L~~l~~~~~-------~~sIL~ 300 (525)
.+....|+.+|+|++||||||||||++|+|+|+++|.+++.++.+++. ++..+|++|..+. +|||||
T Consensus 138 n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLF 217 (413)
T PLN00020 138 NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLF 217 (413)
T ss_pred hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 344457899999999999999999999999999999999999998874 5688999997663 699999
Q ss_pred EeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC--------C--CCCCCceEE
Q 009791 301 IEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL--------W--SSCGDERII 370 (525)
Q Consensus 301 iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl--------~--s~~~~~~iv 370 (525)
|||||++++ .|...+ .....+...++|||.+|+. | ......++|
T Consensus 218 IDEIDA~~g--~r~~~~------------------------~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~V 271 (413)
T PLN00020 218 INDLDAGAG--RFGTTQ------------------------YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPI 271 (413)
T ss_pred EehhhhcCC--CCCCCC------------------------cchHHHHHHHHHHHHhcCCccccccccccccccCCCceE
Confidence 999999875 332111 1112345558999998863 4 122356899
Q ss_pred EEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc
Q 009791 371 VFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI 432 (525)
Q Consensus 371 I~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~ 432 (525)
|+|||+|+.|||||+||||||+.+ ..|+.++|.+|++.++... .....++..|+..+
T Consensus 272 IaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~---~l~~~dv~~Lv~~f 328 (413)
T PLN00020 272 IVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD---GVSREDVVKLVDTF 328 (413)
T ss_pred EEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC---CCCHHHHHHHHHcC
Confidence 999999999999999999999975 5899999999999998765 22358888888776
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=2.3e-28 Score=272.23 Aligned_cols=233 Identities=24% Similarity=0.355 Sum_probs=187.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC---
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT--- 281 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~--- 281 (525)
...+|++++|.+..++++.+.+. ++..++.|..+|...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 34689999999999999877654 67778888999999999999999999999999999999999999999987642
Q ss_pred ---ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 282 ---RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 282 ---~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
....++.+|..+. .||||||||||.++. .|..... +.......++++||+.
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~--~r~~~~~----------------------g~~~~~~~~ln~lL~~ 281 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR--QRGAGLG----------------------GGHDEREQTLNQMLVE 281 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhh--ccCCCCC----------------------CCchHHHHHHHHHHHh
Confidence 3467888887664 799999999999864 2321110 1223456789999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
|||+.+. +.++||+|||+|+.||||++||||||++|++++|+.++|.+|++.|+...+ .....++..+++.+ |||
T Consensus 282 mdg~~~~--~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~--l~~~~d~~~la~~t~G~s 357 (644)
T PRK10733 282 MDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFS 357 (644)
T ss_pred hhcccCC--CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC--CCCcCCHHHHHhhCCCCC
Confidence 9999765 459999999999999999999999999999999999999999999997652 22234456677777 999
Q ss_pred HHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhc
Q 009791 436 PAQVAEQFMK-------SEDADVALAALIKLLKEKERN 466 (525)
Q Consensus 436 padi~~~l~~-------~~~~~~al~~l~~al~~~~~~ 466 (525)
+|||.+++.. .+...+...++.+++......
T Consensus 358 gadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 358 GADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcc
Confidence 9999988753 233456678888887766553
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.7e-27 Score=262.84 Aligned_cols=236 Identities=20% Similarity=0.240 Sum_probs=191.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC-----CceEEEecCC
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-----FDVFDLQLGN 279 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-----~~i~~l~~~~ 279 (525)
.-..|++|+|.+..+.++.+.+..++.+++.|..+++.+|||+|||||||||||++++|+|..+. ..++.-+..+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 34579999999999999999999999999999999999999999999999999999999999882 3344332222
Q ss_pred c------CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHH
Q 009791 280 V------TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLS 351 (525)
Q Consensus 280 l------~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 351 (525)
. +.+..|+-+|.++. +|+|||+||||-+.+.++.... ......++
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE---------------------------qih~SIvS 392 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE---------------------------QIHASIVS 392 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH---------------------------HhhhhHHH
Confidence 2 35678999998885 7999999999988764332211 22345789
Q ss_pred HHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhh
Q 009791 352 GLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKT 431 (525)
Q Consensus 352 ~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~ 431 (525)
.||..|||+.+. ++++||++||+++.+||||+||||||+.++|++|+.++|.+|+..+-..-. ......-+..+++.
T Consensus 393 TLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-~~i~~~l~~~la~~ 469 (1080)
T KOG0732|consen 393 TLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-PPISRELLLWLAEE 469 (1080)
T ss_pred HHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-CCCCHHHHHHHHHh
Confidence 999999999876 569999999999999999999999999999999999999999998876652 33334556667777
Q ss_pred c-CCCHHHHHHHHHc-----------------------CCCHHHHHHHHHHHHHHhhhcCCCC
Q 009791 432 I-NITPAQVAEQFMK-----------------------SEDADVALAALIKLLKEKERNGSGD 470 (525)
Q Consensus 432 ~-~~tpadi~~~l~~-----------------------~~~~~~al~~l~~al~~~~~~~~~~ 470 (525)
+ ||-+||+..+|.. -....+.+++|..|+....++..+.
T Consensus 470 t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 470 TSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred ccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 6 9999998877641 0123367889999999999888763
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.6e-26 Score=234.44 Aligned_cols=210 Identities=23% Similarity=0.268 Sum_probs=178.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC---
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT--- 281 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~--- 281 (525)
.+..|++++|..+.|+.+.+.+..++.+++.|..+ .++.+|+||.||||||||+|++|||.+.+..|+.+..+++.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 34689999999999999999999999999988876 46678999999999999999999999999999999998884
Q ss_pred ---ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 282 ---RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 282 ---~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
++.-++.+|.-+ .+|+||||||||.++. .|... ....+.+....+|..
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls--~Rs~~-------------------------e~e~srr~ktefLiq 279 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLS--KRSDN-------------------------EHESSRRLKTEFLLQ 279 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHh--hcCCc-------------------------ccccchhhhhHHHhh
Confidence 335566666544 4899999999999985 44211 123445677889999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
+|+..+...+.++||+|||.|+.+|.|++| ||-..+++|.|+.++|..++.+++...+ +.....+++.+++.+ ||+
T Consensus 280 ~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~-~~l~~~d~~~l~~~Tegys 356 (428)
T KOG0740|consen 280 FDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQP-NGLSDLDISLLAKVTEGYS 356 (428)
T ss_pred hccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCcc
Confidence 999988877889999999999999999999 9999999999999999999999998662 333457899999988 999
Q ss_pred HHHHHHHHHc
Q 009791 436 PAQVAEQFMK 445 (525)
Q Consensus 436 padi~~~l~~ 445 (525)
..||.++|..
T Consensus 357 gsdi~~l~ke 366 (428)
T KOG0740|consen 357 GSDITALCKE 366 (428)
T ss_pred cccHHHHHHH
Confidence 9999988763
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.3e-26 Score=236.96 Aligned_cols=209 Identities=22% Similarity=0.351 Sum_probs=162.7
Q ss_pred hHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-ceEEEecCCc------CChhHHHHHHHHhC----------
Q 009791 232 RKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF-DVFDLQLGNV------TRDSDLRTLLLSTG---------- 294 (525)
Q Consensus 232 ~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~-~i~~l~~~~l------~~~~~L~~l~~~~~---------- 294 (525)
.|+.-.++|++.-+|+|||||||||||.+|+.|..-|+. +--.++..++ ++++++|++|..+.
T Consensus 244 pp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 244 PPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred CHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 478889999999999999999999999999999999974 2333444443 47889999998773
Q ss_pred CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEec
Q 009791 295 NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTT 374 (525)
Q Consensus 295 ~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TT 374 (525)
.--||+|||||++|. .| +... ++.+.....+++||.-|||..+- ++++||+-|
T Consensus 324 gLHIIIFDEiDAICK--qR-GS~~----------------------g~TGVhD~VVNQLLsKmDGVeqL--NNILVIGMT 376 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICK--QR-GSMA----------------------GSTGVHDTVVNQLLSKMDGVEQL--NNILVIGMT 376 (744)
T ss_pred CceEEEehhhHHHHH--hc-CCCC----------------------CCCCccHHHHHHHHHhcccHHhh--hcEEEEecc
Confidence 235999999999984 33 2211 23455667899999999999765 569999999
Q ss_pred CCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCC--CcccHHHHHHHHhhc-CCCHHHHHHHHHc------
Q 009791 375 NHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDC--EHKLVAEIETLLKTI-NITPAQVAEQFMK------ 445 (525)
Q Consensus 375 N~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~--~~~~~~~i~~l~~~~-~~tpadi~~~l~~------ 445 (525)
|++|.+|+||+||||+..++++++|++..|.+|++.+-..... -.....++++++..+ +||+|||..++..
T Consensus 377 NR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~ 456 (744)
T KOG0741|consen 377 NRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAM 456 (744)
T ss_pred CchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877654311 122345677787777 9999999887642
Q ss_pred -----CC-----------CHHHHHHHHHHHHHHhhhcC
Q 009791 446 -----SE-----------DADVALAALIKLLKEKERNG 467 (525)
Q Consensus 446 -----~~-----------~~~~al~~l~~al~~~~~~~ 467 (525)
.+ ...+...++..||++.+|.-
T Consensus 457 nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 457 NRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred HhhhccCcceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 01 12234678888888888864
No 39
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.93 E-value=1.7e-25 Score=190.10 Aligned_cols=96 Identities=39% Similarity=0.688 Sum_probs=92.6
Q ss_pred hCCHHHHHHHHHHHHHhcc-CCCCceEEEEecCCCCCccHHHHHHHHHHhcccCCCcceeEeeecCCCceEEEeccCCCe
Q 009791 34 FLPEPVRNYACFAFRYFFK-PRSKELTLVIEDSNGIARNQIFEAAEAYLSAKIGPSIERLKICKTPNEKVITIRLEKNEQ 112 (525)
Q Consensus 34 ~~P~~l~~~~~~~~~~~~~-~~~~~~t~~i~e~~~~~~n~~~~a~~~yl~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 112 (525)
|||++||.++.+++++++. +++||+||+|+|++|+.+|++|+||++||+++++++++||++++++++++++++|++|++
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e~ 80 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGEE 80 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCCE
Confidence 6899999999999988776 899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecceEEEEEEEEE
Q 009791 113 IIDSFRGVQLRWRFALV 129 (525)
Q Consensus 113 ~~d~f~g~~~~w~~~~~ 129 (525)
|+|+|+|+++||.+++.
T Consensus 81 V~D~F~Gv~v~W~~~~~ 97 (98)
T PF14363_consen 81 VVDVFEGVKVWWSSVCT 97 (98)
T ss_pred EEEEECCEEEEEEEEcc
Confidence 99999999999998864
No 40
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.7e-24 Score=230.15 Aligned_cols=244 Identities=18% Similarity=0.192 Sum_probs=182.4
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC------ChhHHHHHHHHhC--CCeEEEEeccccccCCCC
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT------RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPD 312 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~------~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~ 312 (525)
+...-.+||+|+||||||++++++|.++|.+++.++|.++. ++..+...|..+. +|+|||+-++|.+.- +
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i--d 505 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI--D 505 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee--c
Confidence 33445699999999999999999999999999999998874 4567888887775 799999999998852 1
Q ss_pred CCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceee
Q 009791 313 RRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDM 392 (525)
Q Consensus 313 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~ 392 (525)
+.+. ..-.-...+..++. +|-.... ...+|+|+||+..+.|++.+.+ -|-.
T Consensus 506 ~dgg-------------------------ed~rl~~~i~~~ls-~e~~~~~-~~~~ivv~t~~s~~~lp~~i~~--~f~~ 556 (953)
T KOG0736|consen 506 QDGG-------------------------EDARLLKVIRHLLS-NEDFKFS-CPPVIVVATTSSIEDLPADIQS--LFLH 556 (953)
T ss_pred CCCc-------------------------hhHHHHHHHHHHHh-cccccCC-CCceEEEEeccccccCCHHHHH--hhhh
Confidence 1110 11112233344443 3333322 3568999999999999999998 8889
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCHHHHHHHHHcC-------------------------
Q 009791 393 HIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITPAQVAEQFMKS------------------------- 446 (525)
Q Consensus 393 ~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpadi~~~l~~~------------------------- 446 (525)
.|.++.|+.++|.+|++.|+... ..........++..+ +|+.+++..++...
T Consensus 557 ei~~~~lse~qRl~iLq~y~~~~--~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~ 634 (953)
T KOG0736|consen 557 EIEVPALSEEQRLEILQWYLNHL--PLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGEL 634 (953)
T ss_pred hccCCCCCHHHHHHHHHHHHhcc--ccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcccccc
Confidence 99999999999999999999744 222334456677777 99999887654321
Q ss_pred --CCHHHHHHHHHHHHHHhhhcCCCC-CCCCCCCCCchhhhcchhhhhHhHHHhhhccccc--ccCccc-cccccCC
Q 009791 447 --EDADVALAALIKLLKEKERNGSGD-VDGDEDEINLDEVAILESKKLKTQDQIQDKGKET--AAGPIR-RRRKRSS 517 (525)
Q Consensus 447 --~~~~~al~~l~~al~~~~~~~~~~-~~~~~~~v~w~dIggl~~vK~~L~e~i~w~~k~~--~~~~~~-~~~~~~~ 517 (525)
...-...+++.+++.+.+.+.... +++++|+|+|+|||||+++|++++++|+-|+|+. +...++ |..-.-+
T Consensus 635 ~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLY 711 (953)
T KOG0736|consen 635 CAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLY 711 (953)
T ss_pred ccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEE
Confidence 012345678888988777766544 6899999999999999999999999999999998 444444 5544433
No 41
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.8e-23 Score=219.73 Aligned_cols=258 Identities=16% Similarity=0.168 Sum_probs=191.7
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC----CceEEEecCCcCCh--
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK----FDVFDLQLGNVTRD-- 283 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~----~~i~~l~~~~l~~~-- 283 (525)
.+++-.+..|++..++...+ +.....+||+||+|||||.|++++++++. +++..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 55666677776665532222 33345799999999999999999999984 55667889888532
Q ss_pred ----hHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhh
Q 009791 284 ----SDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFI 357 (525)
Q Consensus 284 ----~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~i 357 (525)
..|+..|.++ ..||||++||+||++......+ +..+.....+..+||.+
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~-------------------------~q~~~~~~rla~flnqv 531 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNEN-------------------------GQDGVVSERLAAFLNQV 531 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccC-------------------------CcchHHHHHHHHHHHHH
Confidence 2344445444 4899999999999986211111 11223334456666544
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCH
Q 009791 358 DGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITP 436 (525)
Q Consensus 358 dgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tp 436 (525)
-......+..+.+|+|.+..+.|+|-|..|++|+.++.++.|...+|.+|+++.+...- ......+++-+..++ ||.+
T Consensus 532 i~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~-~~~~~~dLd~ls~~TEGy~~ 610 (952)
T KOG0735|consen 532 IKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL-SDITMDDLDFLSVKTEGYLA 610 (952)
T ss_pred HHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh-hhhhhHHHHHHHHhcCCccc
Confidence 33333334457889999999999999999999999999999999999999999886542 233556676677777 9999
Q ss_pred HHHHHHHHc-----------CCCHHHHHHHHHHHHHHhhhcCCCCCCCCCCC-CCchhhhcchhhhhHhHHHhhhccccc
Q 009791 437 AQVAEQFMK-----------SEDADVALAALIKLLKEKERNGSGDVDGDEDE-INLDEVAILESKKLKTQDQIQDKGKET 504 (525)
Q Consensus 437 adi~~~l~~-----------~~~~~~al~~l~~al~~~~~~~~~~~~~~~~~-v~w~dIggl~~vK~~L~e~i~w~~k~~ 504 (525)
.|+.-+..+ +..+-..-+.+.++|+.+.|.+++++...+++ +.|+|||||.++|+.|+|+|+||.|=-
T Consensus 611 ~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp 690 (952)
T KOG0735|consen 611 TDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYP 690 (952)
T ss_pred hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccch
Confidence 887644332 22234566789999999999999999988888 999999999999999999999998754
No 42
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1e-20 Score=191.42 Aligned_cols=255 Identities=18% Similarity=0.185 Sum_probs=176.4
Q ss_pred cCcchhhHHHhhhHHHHHHHHHhhcccceEEEEecccCCCCCCC-cceeccccCCCCccccccChHHHHHHHHHHHHHHH
Q 009791 153 HQTHKDMVLNSYLPHVIELAKDMKDKTRVLKMYTLHRVPDYDAI-RWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVR 231 (525)
Q Consensus 153 ~~~~~~~v~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~ 231 (525)
..+.-..|+.+|+..++.+...+++..+..--|+...+.--... .-..........|+.|++.+.+++.|.+....--+
T Consensus 297 Ttkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaN 376 (630)
T KOG0742|consen 297 TTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATAN 376 (630)
T ss_pred eccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcc
Confidence 34555679999999999998888777664321211100000000 00011123344699999999999988765443222
Q ss_pred hHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC-----ChhHHHHHHHHhC---CCeEEEEec
Q 009791 232 RKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-----RDSDLRTLLLSTG---NRSILVIED 303 (525)
Q Consensus 232 ~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-----~~~~L~~l~~~~~---~~sIL~iDd 303 (525)
.+....+-|.+|||||||||||+.++-||.+.|+++-.+..+++. ..+.++++|.-++ ..-+|||||
T Consensus 377 -----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDE 451 (630)
T KOG0742|consen 377 -----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDE 451 (630)
T ss_pred -----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehh
Confidence 233456678999999999999999999999999999988888873 3467888886543 456999999
Q ss_pred cccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCcc
Q 009791 304 IDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPA 383 (525)
Q Consensus 304 ID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpa 383 (525)
.|+++ +.|.....+ ......|+.||-.. |-. ...+++|.+||+|.+||.|
T Consensus 452 ADAFL--ceRnktymS------------------------EaqRsaLNAlLfRT-Gdq---SrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 452 ADAFL--CERNKTYMS------------------------EAQRSALNALLFRT-GDQ---SRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred hHHHH--HHhchhhhc------------------------HHHHHHHHHHHHHh-ccc---ccceEEEeccCCccchhHH
Confidence 99986 355443322 23456778877433 322 2458899999999999999
Q ss_pred ccCCCceeeEEEcCCCCHHHHHHHHHHHhCCc---C-CCc---------------------ccHHHHHHHHhhc-CCCHH
Q 009791 384 LLRPGRMDMHIHMSYCGPYGFRLLAANYLGIT---D-CEH---------------------KLVAEIETLLKTI-NITPA 437 (525)
Q Consensus 384 LlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~---~-~~~---------------------~~~~~i~~l~~~~-~~tpa 437 (525)
+-. |||..|+||+|..++|..|+..||... + ... .....+.+.+..+ |||+.
T Consensus 502 V~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 502 VND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 999 999999999999999999999988532 0 000 0111233445556 99999
Q ss_pred HHHHHHH
Q 009791 438 QVAEQFM 444 (525)
Q Consensus 438 di~~~l~ 444 (525)
+|+.++.
T Consensus 580 EiakLva 586 (630)
T KOG0742|consen 580 EIAKLVA 586 (630)
T ss_pred HHHHHHH
Confidence 9988765
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.83 E-value=1.5e-20 Score=166.93 Aligned_cols=123 Identities=31% Similarity=0.528 Sum_probs=101.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC------ChhHHHHHHHHh--CC-CeEEEEeccccccCCCCCCCCC
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT------RDSDLRTLLLST--GN-RSILVIEDIDCSVDLPDRRNGN 317 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~------~~~~L~~l~~~~--~~-~sIL~iDdID~~~~~~~r~~~~ 317 (525)
+|||||||||||++|+++|++++.+++.+++.++. ....+...|..+ .. |+||+|||+|.++... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~- 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QP- 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---ST-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---cc-
Confidence 68999999999999999999999999999998875 346677778775 34 8999999999987511 11
Q ss_pred CCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcC
Q 009791 318 ENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMS 397 (525)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~ 397 (525)
.........++.|++.++..... ..+++||+|||+++.+||+++| |||+..|++|
T Consensus 77 -----------------------~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 77 -----------------------SSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp -----------------------SSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred -----------------------ccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 12345567889999999998664 3468999999999999999998 9999999987
Q ss_pred C
Q 009791 398 Y 398 (525)
Q Consensus 398 ~ 398 (525)
.
T Consensus 132 ~ 132 (132)
T PF00004_consen 132 L 132 (132)
T ss_dssp S
T ss_pred C
Confidence 4
No 44
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.6e-18 Score=185.17 Aligned_cols=239 Identities=26% Similarity=0.328 Sum_probs=189.0
Q ss_pred HhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC------ChhHHHHHHHHhC--CCeEEEEe
Q 009791 231 RRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT------RDSDLRTLLLSTG--NRSILVIE 302 (525)
Q Consensus 231 ~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~------~~~~L~~l~~~~~--~~sIL~iD 302 (525)
..++.++..+..+++|+++|||||||||++++++|++ +.....++...+. +...++.+|..+. .|+|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 4567788999999999999999999999999999999 5444444444332 3466777777664 67999999
Q ss_pred ccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCc
Q 009791 303 DIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDP 382 (525)
Q Consensus 303 dID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDp 382 (525)
++|.+.+ .+.. . ........+++|+..+|++. .+. ++++..||.+..+|+
T Consensus 84 ~~~~~~~--~~~~-~------------------------~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~ 133 (494)
T COG0464 84 EIDALAP--KRSS-D------------------------QGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDP 133 (494)
T ss_pred hhhhccc--Cccc-c------------------------ccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccCh
Confidence 9999875 2221 1 12345678899999999998 456 888889999999999
Q ss_pred cccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCHHHHHHHHHc-------------CCC
Q 009791 383 ALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITPAQVAEQFMK-------------SED 448 (525)
Q Consensus 383 aLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpadi~~~l~~-------------~~~ 448 (525)
++++||||+..+++..|+...+.++........ ..........++..+ +++.+++..++.. ...
T Consensus 134 a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~ 211 (494)
T COG0464 134 AKRRPGRFDREIEVNLPDEAGRLEILQIHTRLM--FLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEY 211 (494)
T ss_pred hHhCccccceeeecCCCCHHHHHHHHHHHHhcC--CCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 999999999999999999999988888766443 122234566666666 8999998876631 123
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCchhhhcchhhhhHhHHHhhhccccc
Q 009791 449 ADVALAALIKLLKEKERNGSGDVDGDEDEINLDEVAILESKKLKTQDQIQDKGKET 504 (525)
Q Consensus 449 ~~~al~~l~~al~~~~~~~~~~~~~~~~~v~w~dIggl~~vK~~L~e~i~w~~k~~ 504 (525)
.....+++.++++...++ +.+....+.|+|+||||++.+|+.+++.++|+.+..
T Consensus 212 ~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~ 265 (494)
T COG0464 212 IGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRP 265 (494)
T ss_pred ccccHHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhCh
Confidence 446678888899988887 677888999999999999999999999999998876
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.78 E-value=1.3e-17 Score=159.94 Aligned_cols=190 Identities=18% Similarity=0.222 Sum_probs=125.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD 283 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~ 283 (525)
-.|.+|++++|++++++.+.-.+.....+ + .....+|||||||+||||||+.||++++.++...+...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~-~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR-------G-EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------T-S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc-------C-CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 46889999999999988765544432211 1 223479999999999999999999999999999988878778
Q ss_pred hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCC--
Q 009791 284 SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLW-- 361 (525)
Q Consensus 284 ~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~-- 361 (525)
.++..++.......|||||||+.+- +.....|+..|+...
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRln--------------------------------------k~~qe~LlpamEd~~id 131 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRLN--------------------------------------KAQQEILLPAMEDGKID 131 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC----------------------------------------HHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHhcCCCcEEEEechhhcc--------------------------------------HHHHHHHHHHhccCeEE
Confidence 8999999998899999999999873 122233444443221
Q ss_pred ---CCCC---------CceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCccc-HHHHHHH
Q 009791 362 ---SSCG---------DERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKL-VAEIETL 428 (525)
Q Consensus 362 ---s~~~---------~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~-~~~i~~l 428 (525)
..+. ...-+|++|++...|.+.|+. ||....++.+.+.++..+|+.+..... .-.. .+...++
T Consensus 132 iiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l--~i~i~~~~~~~I 207 (233)
T PF05496_consen 132 IIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARIL--NIEIDEDAAEEI 207 (233)
T ss_dssp EEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCT--T-EE-HHHHHHH
T ss_pred EEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHh--CCCcCHHHHHHH
Confidence 1111 235788999999999999999 999999999999999999998766655 3333 3445556
Q ss_pred HhhcCCCHHHHHHHH
Q 009791 429 LKTINITPAQVAEQF 443 (525)
Q Consensus 429 ~~~~~~tpadi~~~l 443 (525)
+....-||.-...+|
T Consensus 208 a~rsrGtPRiAnrll 222 (233)
T PF05496_consen 208 ARRSRGTPRIANRLL 222 (233)
T ss_dssp HHCTTTSHHHHHHHH
T ss_pred HHhcCCChHHHHHHH
Confidence 666677887444443
No 46
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.1e-19 Score=175.51 Aligned_cols=179 Identities=19% Similarity=0.298 Sum_probs=136.6
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhC-CCCcceeeEeCCCCCcHHHHHHHHHHHcC---------CceEEEe
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVG-RAWKRGYLLYGPPGTGKSSLVAAMANYLK---------FDVFDLQ 276 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GppGTGKTsLa~AiA~~l~---------~~i~~l~ 276 (525)
.-|++|+-+.++|+.++.....-+.-.+.-.... +.|.|-+|||||||||||+|++|+|+.|. ..++.++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 3578899999999999987765554333222211 57889999999999999999999999983 3456677
Q ss_pred cCCc------CChhHHHHHHHHhC-------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCC
Q 009791 277 LGNV------TRDSDLRTLLLSTG-------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGK 343 (525)
Q Consensus 277 ~~~l------~~~~~L~~l~~~~~-------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
+.++ ++...+.++|++.. .-..++|||++.+.. .|....+ ....
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~--aR~s~~S---------------------~~Ep 275 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAA--ARTSASS---------------------RNEP 275 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHH--HHHhhhc---------------------CCCC
Confidence 6665 24455666666553 335778999998854 2322111 1223
Q ss_pred chhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 344 GQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 344 ~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
...-+.++.||+.||.+... .+++|++|+|-.+.||-|+.. |-|-..++++|+.+++.+|++..+
T Consensus 276 sDaIRvVNalLTQlDrlK~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 276 SDAIRVVNALLTQLDRLKRY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred chHHHHHHHHHHHHHHhccC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 45578999999999999876 559999999999999999999 999999999999999999998765
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.75 E-value=2.2e-17 Score=170.62 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=142.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD 283 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~ 283 (525)
..|.+|++++|.++.++.+...+...... ...++++|||||||||||++++++|++++.++...+...+...
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~ 90 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP 90 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh
Confidence 45789999999999998887766533221 2345689999999999999999999999999888877767677
Q ss_pred hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCC--
Q 009791 284 SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLW-- 361 (525)
Q Consensus 284 ~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~-- 361 (525)
..+..++.....++||||||||.+.. . ....|.+.++...
T Consensus 91 ~~l~~~l~~l~~~~vl~IDEi~~l~~-----------------------------------~---~~e~l~~~~e~~~~~ 132 (328)
T PRK00080 91 GDLAAILTNLEEGDVLFIDEIHRLSP-----------------------------------V---VEEILYPAMEDFRLD 132 (328)
T ss_pred HHHHHHHHhcccCCEEEEecHhhcch-----------------------------------H---HHHHHHHHHHhccee
Confidence 78888888888899999999998732 0 0011222222110
Q ss_pred -------CC-----CCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHH
Q 009791 362 -------SS-----CGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLL 429 (525)
Q Consensus 362 -------s~-----~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~ 429 (525)
+. ......+|++||++..++++|.+ ||+..+++++++.+++.++++......+ .....+.+..++
T Consensus 133 ~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia 209 (328)
T PRK00080 133 IMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIA 209 (328)
T ss_pred eeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHH
Confidence 00 01236789999999999999988 9999999999999999999998876542 222344567777
Q ss_pred hhcCCCHHHHHHHHH
Q 009791 430 KTINITPAQVAEQFM 444 (525)
Q Consensus 430 ~~~~~tpadi~~~l~ 444 (525)
...+-+|..+...+.
T Consensus 210 ~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 210 RRSRGTPRIANRLLR 224 (328)
T ss_pred HHcCCCchHHHHHHH
Confidence 777778876666554
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.73 E-value=7.1e-17 Score=164.96 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=135.2
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHH
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLR 287 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~ 287 (525)
+|++++|.++.++.|...+...... ...+++++||||||||||+|++++|++++.++..+..........+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 6899999999999887766433321 12345799999999999999999999999998887766666666777
Q ss_pred HHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCC------
Q 009791 288 TLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLW------ 361 (525)
Q Consensus 288 ~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~------ 361 (525)
..+.....+.||||||||.+.+ .....|++.++...
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~--------------------------------------~~~e~l~~~~~~~~~~~v~~ 115 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSP--------------------------------------AVEELLYPAMEDFRLDIVIG 115 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCH--------------------------------------HHHHHhhHHHhhhheeeeec
Confidence 7787778899999999998742 00111222222110
Q ss_pred --------CCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcC
Q 009791 362 --------SSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTIN 433 (525)
Q Consensus 362 --------s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~ 433 (525)
.......++|++||++..++++|++ ||...++++.++.++..++++...+... .....+.++.+++..+
T Consensus 116 ~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~-~~~~~~al~~ia~~~~ 192 (305)
T TIGR00635 116 KGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLN-VEIEPEAALEIARRSR 192 (305)
T ss_pred cCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHhC
Confidence 0011237889999999999999999 9999999999999999999998776432 2223445666777666
Q ss_pred CCHHHHHHHH
Q 009791 434 ITPAQVAEQF 443 (525)
Q Consensus 434 ~tpadi~~~l 443 (525)
-.|..+...+
T Consensus 193 G~pR~~~~ll 202 (305)
T TIGR00635 193 GTPRIANRLL 202 (305)
T ss_pred CCcchHHHHH
Confidence 6666655443
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.72 E-value=1.2e-16 Score=160.03 Aligned_cols=169 Identities=16% Similarity=0.209 Sum_probs=120.9
Q ss_pred ccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCc---ceeeEeCCCCCcHHHHHHHHHHHcC-------CceEEEecC
Q 009791 209 FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWK---RGYLLYGPPGTGKSSLVAAMANYLK-------FDVFDLQLG 278 (525)
Q Consensus 209 f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~---rg~LL~GppGTGKTsLa~AiA~~l~-------~~i~~l~~~ 278 (525)
+++++|.+++|+.|.+.+...... ......|...+ .++|||||||||||++|+++|+.+. .+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999999877654433 34445666433 4589999999999999999998752 356666665
Q ss_pred CcC------ChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHH
Q 009791 279 NVT------RDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSG 352 (525)
Q Consensus 279 ~l~------~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 352 (525)
++. +...++.+|..+ .++||||||+|.+.. .+. .......+..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~----~~~--------------------------~~~~~~~i~~ 132 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR----GGE--------------------------KDFGKEAIDT 132 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc----CCc--------------------------cchHHHHHHH
Confidence 542 234566666655 468999999998842 100 1112345777
Q ss_pred HhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 353 LLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 353 LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
|++.++... ..+++|++++..+ .++|+|.+ ||+.+|+|+.++.+++.+|++.++...
T Consensus 133 Ll~~~e~~~----~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 133 LVKGMEDNR----NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred HHHHHhccC----CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 888888742 3355666554332 37899999 999999999999999999999988644
No 50
>CHL00181 cbbX CbbX; Provisional
Probab=99.72 E-value=1.3e-16 Score=161.52 Aligned_cols=169 Identities=18% Similarity=0.261 Sum_probs=123.7
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCc-ce--eeEeCCCCCcHHHHHHHHHHHcC-------CceEEEecCC
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWK-RG--YLLYGPPGTGKSSLVAAMANYLK-------FDVFDLQLGN 279 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~-rg--~LL~GppGTGKTsLa~AiA~~l~-------~~i~~l~~~~ 279 (525)
++++|.+++|++|.+.+. ++.....+...|...+ .| +||+||||||||++|+++|+.+. .+++.++..+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~-~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAA-LLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999988764 4555677788887655 34 89999999999999999999862 2577777555
Q ss_pred cC------ChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHH
Q 009791 280 VT------RDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGL 353 (525)
Q Consensus 280 l~------~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 353 (525)
+. +....+.++..+ .++||||||+|.+.. .+. ........+..|
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~--~~~---------------------------~~~~~~e~~~~L 151 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYK--PDN---------------------------ERDYGSEAIEIL 151 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhcc--CCC---------------------------ccchHHHHHHHH
Confidence 42 233445556554 468999999998753 110 011234567788
Q ss_pred hhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 354 LNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 354 Ln~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
+..|+... ..++||++++... .++|+|.+ ||+.+|+|+.++.+++.+|+..++...
T Consensus 152 ~~~me~~~----~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 152 LQVMENQR----DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHhcCC----CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 88887642 3467777765321 34699999 999999999999999999999998644
No 51
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.70 E-value=2e-16 Score=160.18 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=125.6
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCC---cceeeEeCCCCCcHHHHHHHHHHHcC-------CceEEEecCCc
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAW---KRGYLLYGPPGTGKSSLVAAMANYLK-------FDVFDLQLGNV 280 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~---~rg~LL~GppGTGKTsLa~AiA~~l~-------~~i~~l~~~~l 280 (525)
.++|.+++|++|.+.+.. +..++.+.+.|... ..++||+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999887654 66677788888764 34799999999999999999998873 25777776554
Q ss_pred C------ChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 281 T------RDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 281 ~------~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
. +...++.+|.++ .++||||||||.+.. .+ . .........+.|+
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~--~~-~--------------------------~~~~~~~~~~~Ll 151 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYR--PD-N--------------------------ERDYGQEAIEILL 151 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhcc--CC-C--------------------------ccchHHHHHHHHH
Confidence 2 234556666655 459999999998742 11 0 0112345677888
Q ss_pred hhhcCCCCCCCCceEEEEecCCC--C---CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 355 NFIDGLWSSCGDERIIVFTTNHK--E---RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 355 n~idgl~s~~~~~~ivI~TTN~~--~---~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
+.|+... .+++||++++.. + .++|+|.+ ||+.+|+||.++.+++..|+..++...
T Consensus 152 ~~le~~~----~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 152 QVMENQR----DDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HHHhcCC----CCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 8887532 346777776542 3 24899999 999999999999999999999998754
No 52
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=9.5e-16 Score=175.00 Aligned_cols=158 Identities=25% Similarity=0.254 Sum_probs=114.8
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh-------
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD------- 283 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~------- 283 (525)
++.|.++.|+.|.+.+..... .+...+..+|||||||||||+++++||+.++.+++.++++.+.+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~-------~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKL-------RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHh-------hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 478899999998886653321 122333479999999999999999999999999999987765322
Q ss_pred --------hHHHHHHHHhC-CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 284 --------SDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 284 --------~~L~~l~~~~~-~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
..+.+.|..+. .+.||+|||||.+.. +. . ....+.||
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~--~~--~------------------------------~~~~~aLl 439 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS--SF--R------------------------------GDPASALL 439 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC--cc--C------------------------------CCHHHHHH
Confidence 34455665543 445999999999852 10 0 01234556
Q ss_pred hhhcCC----CCC-------CCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 355 NFIDGL----WSS-------CGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 355 n~idgl----~s~-------~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
..+|.. +.. .-..+++|+|||.++.+||+|++ ||+ .|+|+.++.+++.+|+++|+
T Consensus 440 ~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 440 EVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred HhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 555521 000 01357899999999999999999 995 68999999999999999987
No 53
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.68 E-value=2e-15 Score=146.75 Aligned_cols=174 Identities=20% Similarity=0.275 Sum_probs=142.8
Q ss_pred CcceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCce
Q 009791 196 IRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDV 272 (525)
Q Consensus 196 ~~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i 272 (525)
+...+|...+|..+++|.|.+.+|+.|++....|+.. . +...+||||++||||||+++|+.+++ |+.+
T Consensus 13 ~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--------~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRl 83 (249)
T PF05673_consen 13 GYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQG--------L-PANNVLLWGARGTGKSSLVKALLNEYADQGLRL 83 (249)
T ss_pred CcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC--------C-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence 3466777778889999999999999999999999874 2 46789999999999999999999977 7888
Q ss_pred EEEecCCcCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHH
Q 009791 273 FDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSG 352 (525)
Q Consensus 273 ~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 352 (525)
+.++-..+..-..+...+...+.+-|||+||+- ++ ........
T Consensus 84 Iev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe-----------------------------------~~d~~yk~ 126 (249)
T PF05673_consen 84 IEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--FE-----------------------------------EGDTEYKA 126 (249)
T ss_pred EEECHHHhccHHHHHHHHhcCCCCEEEEecCCC--CC-----------------------------------CCcHHHHH
Confidence 888888888888888888888889999999865 32 01123466
Q ss_pred HhhhhcCCCCCCCCceEEEEecCCCCCCCccccC---------------------CCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 353 LLNFIDGLWSSCGDERIIVFTTNHKERLDPALLR---------------------PGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 353 LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlR---------------------pGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
|-..|||-....+++++|.+|+|+...+++.... ..||...|.|..|+.++..+|++.|
T Consensus 127 LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~ 206 (249)
T PF05673_consen 127 LKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHY 206 (249)
T ss_pred HHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHH
Confidence 7788899888888999999999987655432221 1389999999999999999999999
Q ss_pred hCCc
Q 009791 412 LGIT 415 (525)
Q Consensus 412 l~~~ 415 (525)
+...
T Consensus 207 ~~~~ 210 (249)
T PF05673_consen 207 AERY 210 (249)
T ss_pred HHHc
Confidence 9654
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=3.6e-15 Score=161.88 Aligned_cols=161 Identities=19% Similarity=0.319 Sum_probs=122.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR 282 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~ 282 (525)
-+.|.+|++|+|.++.++.|.+.+..+.. |.+ ++++|||||||||||++|+++|++++++++.++.++..+
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~-~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 47899999999999999999888876552 222 679999999999999999999999999999999988766
Q ss_pred hhHHHHHHHHh--------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 283 DSDLRTLLLST--------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 283 ~~~L~~l~~~~--------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
...++.+.... ..+.||+|||+|.+.. + .....+..|+
T Consensus 78 ~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~---~-------------------------------~d~~~~~aL~ 123 (482)
T PRK04195 78 ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG---N-------------------------------EDRGGARAIL 123 (482)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEecCccccc---c-------------------------------cchhHHHHHH
Confidence 66666655433 2477999999998742 0 0112345566
Q ss_pred hhhcCCCCCCCCceEEEEecCCCCCCCc-cccCCCceeeEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 355 NFIDGLWSSCGDERIIVFTTNHKERLDP-ALLRPGRMDMHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 355 n~idgl~s~~~~~~ivI~TTN~~~~LDp-aLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
+.++.. ...||++||.+..+++ .|.+ ....|+|+.|+..+...++...+...
T Consensus 124 ~~l~~~------~~~iIli~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 124 ELIKKA------KQPIILTANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred HHHHcC------CCCEEEeccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHc
Confidence 666632 1346778899988887 5544 34679999999999999888877544
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.65 E-value=3.8e-16 Score=177.31 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=115.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceEE
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVFD 274 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~~ 274 (525)
.|..++.++|.++..+.+++.|. ...+.++||+||||||||++++++|+.+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 56688999998887776665442 2235689999999999999999999988 788999
Q ss_pred EecCCcCC--------hhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCc
Q 009791 275 LQLGNVTR--------DSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKG 344 (525)
Q Consensus 275 l~~~~l~~--------~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (525)
++++.+.. +..+++++..+. .++||||||||.+++.... .. +
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~--------------------------~ 295 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SG--------------------------G 295 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CC--------------------------c
Confidence 99877642 357888888764 5899999999999752110 00 0
Q ss_pred hhHHHHHHHhhhhcCCCCCCCCceEEEEecCCC-----CCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 345 QHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHK-----ERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 345 ~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~-----~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
.....+-|+..+. .+++.+|++||.. -.+|+||.| ||. .|+++.|+.+++.+|++....
T Consensus 296 -~~~~~~~L~~~l~------~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 296 -SMDASNLLKPALS------SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred -cHHHHHHHHHHHh------CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 0111222333332 1457888888864 357999999 997 699999999999999996654
No 56
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.2e-15 Score=158.59 Aligned_cols=159 Identities=23% Similarity=0.294 Sum_probs=114.8
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhH-----
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSD----- 285 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~----- 285 (525)
+-.|.+++|+.|++++.-- +-.|-.-..-++|+||||.||||++++||..||..|+.++++.+.+..+
T Consensus 412 DHYgm~dVKeRILEfiAV~-------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVG-------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHH-------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 5578889999999877421 1112233445889999999999999999999999999999998866544
Q ss_pred ----------HHHHHHHhC-CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 286 ----------LRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 286 ----------L~~l~~~~~-~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
+.+.+.... ..-+++|||||.+.. ..++ . --+.||
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~----g~qG---------------------------D---PasALL 530 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS----GHQG---------------------------D---PASALL 530 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC----CCCC---------------------------C---hHHHHH
Confidence 444455443 455889999999852 1111 1 123333
Q ss_pred hhh---------cCCCCCC--CCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 355 NFI---------DGLWSSC--GDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 355 n~i---------dgl~s~~--~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
..+ |-+..-. -..|++|+|+|..+.+||+|+. || ..|+++-...++.-.|+.+||-
T Consensus 531 ElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 531 ELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred HhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 333 3221110 1248999999999999999999 99 4699999999999999999984
No 57
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.5e-15 Score=160.52 Aligned_cols=159 Identities=23% Similarity=0.226 Sum_probs=116.9
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHH---
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLR--- 287 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~--- 287 (525)
+-.|.+++|+.|++.|.-.... +.--..-++|+||||+|||||++.||..+|..|+.++++.+.+++++|
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4568899999999987533222 112223578999999999999999999999999999999998776653
Q ss_pred ------------HHHHHhC-CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 288 ------------TLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 288 ------------~l~~~~~-~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
+-+.++. ..-+++|||||.+.. +- ...-.|.||
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s--s~--------------------------------rGDPaSALL 442 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS--SF--------------------------------RGDPASALL 442 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccC--CC--------------------------------CCChHHHHH
Confidence 3333333 455899999999853 10 011234455
Q ss_pred hhhcC---------CCCC--CCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 355 NFIDG---------LWSS--CGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 355 n~idg---------l~s~--~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
..+|- +..- .-..|++|+|+|..+.+|.+|+. || ..|+++-.+.++..+|+++||-
T Consensus 443 EVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 443 EVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcc
Confidence 55542 1100 01258999999999999999999 99 5699999999999999999984
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=3.3e-15 Score=162.63 Aligned_cols=180 Identities=15% Similarity=0.247 Sum_probs=131.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
.+|.+|++|+|.+.+++.|.+.+.. ...+..|||+||+|||||++++++|+.+++
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 6899999999999999877776541 134568999999999999999999999976
Q ss_pred ----------------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhh
Q 009791 271 ----------------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAA 328 (525)
Q Consensus 271 ----------------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~ 328 (525)
+++.++..+-.+-.++++++.... ...|++|||+|.+.
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-------------------- 137 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-------------------- 137 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------------
Confidence 456666554444567777776542 35699999999772
Q ss_pred hhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHH
Q 009791 329 GAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLA 408 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~ 408 (525)
....+.||..|+.- +..+++|++||.+++|.+.++. |+ .++.|..++.++..+.+
T Consensus 138 ------------------~~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L 192 (700)
T PRK12323 138 ------------------NHAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHL 192 (700)
T ss_pred ------------------HHHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHH
Confidence 23567899888863 3557899999999999999998 76 67999999999988888
Q ss_pred HHHhCCcCCCcccHHHHHHHHhhcCCCHHHHHH
Q 009791 409 ANYLGITDCEHKLVAEIETLLKTINITPAQVAE 441 (525)
Q Consensus 409 ~~~l~~~~~~~~~~~~i~~l~~~~~~tpadi~~ 441 (525)
...+...+ .......+..++..++-++.+..+
T Consensus 193 ~~Il~~Eg-i~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 193 DAILGEEG-IAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 87765432 111222334444444445544433
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=7.3e-15 Score=158.04 Aligned_cols=153 Identities=19% Similarity=0.337 Sum_probs=115.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++++|.+.+++.|...+. . ...+.++|||||||||||++|+++|+.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~----~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALK----K--------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 678999999999988776655432 1 124567999999999999999999999875
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++.+.-.+-..++++..... ...||+|||+|.+.
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------------------- 130 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------------------- 130 (472)
T ss_pred HHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-------------------------
Confidence 577777654444556676654432 35699999999772
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
...++.||..++.. +..+++|++||.++.+++++.+ |+ ..++|..++.++...+++..+.
T Consensus 131 -------------~~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 131 -------------KEAFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred -------------HHHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHH
Confidence 22456788888764 2346777777788899999998 76 4799999999998888877654
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=9.6e-15 Score=160.85 Aligned_cols=155 Identities=16% Similarity=0.275 Sum_probs=120.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
+.|.+|++|+|.+.+++.|...+. +...+..||||||+|||||++++++|+.+++
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 578999999999998887776553 1234668999999999999999999999865
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++..+-....++++++.... ...|++|||+|.+.
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------------------- 132 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------------------- 132 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-------------------------
Confidence 455565554334456777776542 34699999999873
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.. ...+++|++||++++|.+.++. |+ .++.|..++.++....+...+.
T Consensus 133 -------------~~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~ 192 (830)
T PRK07003 133 -------------NHAFNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILG 192 (830)
T ss_pred -------------HHHHHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHH
Confidence 23567788888874 2458899999999999999998 77 6799999999998888887775
Q ss_pred Cc
Q 009791 414 IT 415 (525)
Q Consensus 414 ~~ 415 (525)
.+
T Consensus 193 ~E 194 (830)
T PRK07003 193 EE 194 (830)
T ss_pred Hc
Confidence 43
No 61
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=8.6e-15 Score=155.72 Aligned_cols=155 Identities=15% Similarity=0.281 Sum_probs=115.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+...+.|...+.. | ..+..||||||||||||++|+++|+.+++
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 6789999999999888876665531 1 23457999999999999999999999976
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++..+-.+...++++..... ..-|++|||+|.+-
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------------------- 134 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------------------- 134 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-------------------------
Confidence 355555543333455666554332 35699999999772
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.- +..+++|++||.++.|.+++++ |+ .+++|..++.++..+.++..+.
T Consensus 135 -------------~~A~NALLKtLEEP----p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 135 -------------DQSFNALLKTLEEP----PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred -------------HHHHHHHHHHhhcC----CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHH
Confidence 23577888888763 3458888999999999999998 77 4688888888888777777665
Q ss_pred Cc
Q 009791 414 IT 415 (525)
Q Consensus 414 ~~ 415 (525)
..
T Consensus 195 ~E 196 (484)
T PRK14956 195 IE 196 (484)
T ss_pred Hc
Confidence 43
No 62
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.6e-14 Score=141.34 Aligned_cols=189 Identities=17% Similarity=0.191 Sum_probs=138.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD 283 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~ 283 (525)
-.|.+|++.+|.+++|+.+.=.+..-..+ ....-.+|||||||.||||||.-||+++|.++...+...+...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 35889999999999888776554432221 2234579999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh-hc---C
Q 009791 284 SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF-ID---G 359 (525)
Q Consensus 284 ~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~-id---g 359 (525)
.+|..++.......|||||||+.+... ........+=.+ +| |
T Consensus 92 gDlaaiLt~Le~~DVLFIDEIHrl~~~----------------------------------vEE~LYpaMEDf~lDI~IG 137 (332)
T COG2255 92 GDLAAILTNLEEGDVLFIDEIHRLSPA----------------------------------VEEVLYPAMEDFRLDIIIG 137 (332)
T ss_pred hhHHHHHhcCCcCCeEEEehhhhcChh----------------------------------HHHHhhhhhhheeEEEEEc
Confidence 999999999999999999999988430 000111111000 11 1
Q ss_pred --CCCC----CCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcC
Q 009791 360 --LWSS----CGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTIN 433 (525)
Q Consensus 360 --l~s~----~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~ 433 (525)
..+. .-...-+|++|.+...|...|.. ||....++.+.+.++..+|+.+.-..-+ -....+...++++.+.
T Consensus 138 ~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSR 214 (332)
T COG2255 138 KGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSR 214 (332)
T ss_pred cCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhcc
Confidence 0000 00236788999999999999999 9999999999999999999998765442 1222344556677777
Q ss_pred CCHH
Q 009791 434 ITPA 437 (525)
Q Consensus 434 ~tpa 437 (525)
-||.
T Consensus 215 GTPR 218 (332)
T COG2255 215 GTPR 218 (332)
T ss_pred CCcH
Confidence 7886
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.4e-14 Score=158.16 Aligned_cols=155 Identities=17% Similarity=0.301 Sum_probs=119.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+..++.|...+. ....+..|||+||||||||++|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 578999999999999888877654 1234578999999999999999999999875
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++.++-..-..+|+++.... ..-|++|||+|.+-
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------------------- 131 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------------------- 131 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-------------------------
Confidence 566677665445567777776542 34699999999772
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.. +..+.+|++|+.+..+++.+++ |+ .+++|..++.++....+...+.
T Consensus 132 -------------~~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~ 191 (702)
T PRK14960 132 -------------THSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILE 191 (702)
T ss_pred -------------HHHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHH
Confidence 23567788888864 2446788888889999999887 76 5789999999998888877765
Q ss_pred Cc
Q 009791 414 IT 415 (525)
Q Consensus 414 ~~ 415 (525)
..
T Consensus 192 kE 193 (702)
T PRK14960 192 KE 193 (702)
T ss_pred Hc
Confidence 44
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.7e-14 Score=149.71 Aligned_cols=155 Identities=15% Similarity=0.256 Sum_probs=114.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+..++.+...+. ....+..|||+||||||||++|+++|+.+.+
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~------------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLS------------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHH------------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 568999999999998887765543 1134668999999999999999999999863
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++.++-..-..+++++.... ..-|++|||+|.+-
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------------------- 132 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------------------- 132 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-------------------------
Confidence 345555443233455666665432 34699999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..++.. +..+.+|++|+.++.+.+++.. |+ ..++|+.++.++....+...+.
T Consensus 133 -------------~~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~ 192 (363)
T PRK14961 133 -------------RHSFNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILI 192 (363)
T ss_pred -------------HHHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 22456688887763 2346778888889999999987 76 5789999999999888887665
Q ss_pred Cc
Q 009791 414 IT 415 (525)
Q Consensus 414 ~~ 415 (525)
..
T Consensus 193 ~~ 194 (363)
T PRK14961 193 KE 194 (363)
T ss_pred Hc
Confidence 43
No 65
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.60 E-value=5.6e-14 Score=144.32 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=115.8
Q ss_pred CcceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 196 IRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 196 ~~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
..|.. .+.|.+|++++|.++.++.+...+. . | ..+..+|||||||+|||++++++|++++.+++.+
T Consensus 9 ~~w~~--kyrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i 74 (316)
T PHA02544 9 FMWEQ--KYRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74 (316)
T ss_pred Cccee--ccCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence 35654 3778999999999999888776653 1 2 2456788899999999999999999999999999
Q ss_pred ecCCcCChhHHHHHH----HHh---CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHH
Q 009791 276 QLGNVTRDSDLRTLL----LST---GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHML 348 (525)
Q Consensus 276 ~~~~l~~~~~L~~l~----~~~---~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (525)
+++. .....++..+ ... ..+.||+|||+|.+.. ..
T Consensus 75 ~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------------------------------------~~ 116 (316)
T PHA02544 75 NGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------------------------------------AD 116 (316)
T ss_pred ccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------------------------------------HH
Confidence 9887 3333333322 222 3578999999997621 01
Q ss_pred HHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 349 TLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 349 ~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
....|.++++... ....+|+|||.+..++|++++ |+. .+.++.|+.+++..++..++
T Consensus 117 ~~~~L~~~le~~~----~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 117 AQRHLRSFMEAYS----KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHHHHHHHHhcC----CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 2233445565542 236788899999999999998 884 68999999999888776543
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=4.1e-14 Score=153.02 Aligned_cols=155 Identities=17% Similarity=0.269 Sum_probs=118.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++++|.+.+.+.|...+. ....+.+|||+||||||||++|+++|+.+++
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~------------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTIL------------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 689999999999998876655432 1234578999999999999999999999864
Q ss_pred ---------------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhh
Q 009791 271 ---------------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAG 329 (525)
Q Consensus 271 ---------------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~ 329 (525)
+++.++..+-.+..+++.++..+. ..-|++|||+|.+.
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------------- 141 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------------- 141 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC---------------------
Confidence 344555544345567888776653 35699999999762
Q ss_pred hhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHH
Q 009791 330 AAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAA 409 (525)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~ 409 (525)
...++.||..|+.. +..+++|++|+.++.++++++. |+ ..++|..++.++....+.
T Consensus 142 -----------------~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~ 197 (507)
T PRK06645 142 -----------------KGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLE 197 (507)
T ss_pred -----------------HHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHH
Confidence 23467788888753 3457888888899999999987 66 578899999999888888
Q ss_pred HHhCCc
Q 009791 410 NYLGIT 415 (525)
Q Consensus 410 ~~l~~~ 415 (525)
..+...
T Consensus 198 ~i~~~e 203 (507)
T PRK06645 198 YITKQE 203 (507)
T ss_pred HHHHHc
Confidence 777543
No 67
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.8e-14 Score=151.43 Aligned_cols=155 Identities=14% Similarity=0.217 Sum_probs=120.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC--------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-------------- 269 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-------------- 269 (525)
..|.+|++|+|.+.+++.|.+.+. ....+.+|||+|||||||||+|+++|+.++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~------------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT------------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 578999999999988876665432 123467899999999999999999998763
Q ss_pred ----------CceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 270 ----------FDVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 270 ----------~~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
.+++.++.++-.+..+++.++.... ..-|++|||+|.+-
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------------------- 129 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------------------- 129 (491)
T ss_pred HHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------------------
Confidence 4677888776666677888776552 35699999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
...++.||..|+.. +..+++|++|+.++++.+.++. |+ ..++|..++.++....+...+.
T Consensus 130 -------------~~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~ 189 (491)
T PRK14964 130 -------------NSAFNALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAK 189 (491)
T ss_pred -------------HHHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHH
Confidence 23577899998874 3457888888999999999987 66 5689999999988888777665
Q ss_pred Cc
Q 009791 414 IT 415 (525)
Q Consensus 414 ~~ 415 (525)
..
T Consensus 190 ~E 191 (491)
T PRK14964 190 KE 191 (491)
T ss_pred Hc
Confidence 43
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=99.57 E-value=6.2e-14 Score=144.45 Aligned_cols=155 Identities=16% Similarity=0.205 Sum_probs=109.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC-----CceEEEec
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-----FDVFDLQL 277 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-----~~i~~l~~ 277 (525)
.+.|.+|++++|++++.+.|...+. . + .. ..+|||||||||||++|.++|+++. ..++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~-~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIAR----D-------G-NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHh----c-------C-CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 4789999999999988777655332 1 1 12 2599999999999999999999983 23556666
Q ss_pred CCcCChhHHHHHHHH---h------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHH
Q 009791 278 GNVTRDSDLRTLLLS---T------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHML 348 (525)
Q Consensus 278 ~~l~~~~~L~~l~~~---~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (525)
++..+-..++..+.. . ....|++|||+|.+.. .
T Consensus 73 sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------------------------------------~ 114 (319)
T PLN03025 73 SDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------------------------------------G 114 (319)
T ss_pred cccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------------------------------------H
Confidence 554444445544432 1 2357999999998731 1
Q ss_pred HHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 349 TLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 349 ~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
..+.|+..++... ....+|++||....+.++|+. |+ ..++|+.|+.++....+...+...
T Consensus 115 aq~aL~~~lE~~~----~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 115 AQQALRRTMEIYS----NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred HHHHHHHHHhccc----CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHc
Confidence 2345666666432 224577899999999999998 65 579999999999888877766543
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.8e-14 Score=153.99 Aligned_cols=154 Identities=19% Similarity=0.337 Sum_probs=117.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+.+++.|...+.. ...+..||||||||||||++|+++|+.+++
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 5789999999999998888776631 234568999999999999999999999965
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++.++-..-.++|+++.... +.-|++|||+|.+.
T Consensus 78 ~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------------------- 132 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------------------- 132 (509)
T ss_pred HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-------------------------
Confidence 266777665555667787776542 34599999999773
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.. ++.+++|++|+.+.++.+.++. |+ ..++|..++.++....+...+.
T Consensus 133 -------------~~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~ 192 (509)
T PRK14958 133 -------------GHSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLK 192 (509)
T ss_pred -------------HHHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHH
Confidence 23467788888874 3457788888889999999887 66 5688888888887666665554
Q ss_pred C
Q 009791 414 I 414 (525)
Q Consensus 414 ~ 414 (525)
.
T Consensus 193 ~ 193 (509)
T PRK14958 193 E 193 (509)
T ss_pred H
Confidence 3
No 70
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.57 E-value=7.3e-14 Score=145.59 Aligned_cols=178 Identities=16% Similarity=0.279 Sum_probs=124.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
+.|.+|++++|.+..++.+.+.+.. | ..+..||||||||+|||++++++|..+..
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5788999999999998888775531 1 34568999999999999999999998742
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++.....+...+++++..+. .+-|++|||+|.+.
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------------------- 130 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------------------- 130 (355)
T ss_pred HHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-------------------------
Confidence 344555443334445667766543 34599999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..++.. +...++|++||+++.+.+++.+ |+ ..++++.|+.++...++..++.
T Consensus 131 -------------~~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 131 -------------KSAFNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILD 190 (355)
T ss_pred -------------HHHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHH
Confidence 12456788888763 3457788888999999999988 76 5789999999999988888775
Q ss_pred CcCCCcccHHHHHHHHhhcCCCHHHH
Q 009791 414 ITDCEHKLVAEIETLLKTINITPAQV 439 (525)
Q Consensus 414 ~~~~~~~~~~~i~~l~~~~~~tpadi 439 (525)
..+ .......++.++...+-++..+
T Consensus 191 ~~g-~~i~~~a~~~l~~~~~g~~~~a 215 (355)
T TIGR02397 191 KEG-IKIEDEALELIARAADGSLRDA 215 (355)
T ss_pred HcC-CCCCHHHHHHHHHHcCCChHHH
Confidence 442 1112233444444444444433
No 71
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=7e-14 Score=154.30 Aligned_cols=153 Identities=19% Similarity=0.320 Sum_probs=118.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+..++.|...+.. ...+..|||+||||||||++++++|+.+++
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 5789999999999988877655531 134667999999999999999999999976
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++..+-..-..+|++..... ..-|++|||+|.+.
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------------------- 132 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------------------- 132 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-------------------------
Confidence 345555543234456777665542 34599999999873
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.- ++.+++|++|+.++.|.+.++. |+ ..++|..++.++....+...+.
T Consensus 133 -------------~~a~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~ 192 (647)
T PRK07994 133 -------------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQ 192 (647)
T ss_pred -------------HHHHHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHH
Confidence 34678899998874 3457788888889999999998 75 7899999999998888887764
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=5.9e-14 Score=154.45 Aligned_cols=155 Identities=17% Similarity=0.314 Sum_probs=118.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+.+++.|...+.. ...+.+|||+||||||||++++++|+.+++
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 5789999999999998888776541 234678999999999999999999998754
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++..+-.....+++++... ....||+|||+|.+-
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------------------- 132 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------------------- 132 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-------------------------
Confidence 34445544434456778777643 245799999999652
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
...++.||..|+.. .+.+.+|++||.+..+.+.++. |+ ..+.|..++.++....+...+.
T Consensus 133 -------------~~A~NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 133 -------------KSAFNAMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred -------------HHHHHHHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHH
Confidence 23467788888864 2347788889999999999886 77 6688889999998888877776
Q ss_pred Cc
Q 009791 414 IT 415 (525)
Q Consensus 414 ~~ 415 (525)
..
T Consensus 193 kE 194 (709)
T PRK08691 193 SE 194 (709)
T ss_pred Hc
Confidence 44
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.6e-14 Score=156.06 Aligned_cols=154 Identities=18% Similarity=0.303 Sum_probs=114.7
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD------------ 271 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~------------ 271 (525)
..|.+|++|+|.+.+++.|.+.+. . ...+..||||||||||||++|+++|+.+++.
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~----~--------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALT----Q--------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----h--------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 568999999999998887765543 1 1346679999999999999999999999763
Q ss_pred ------------eEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 272 ------------VFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 272 ------------i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
++.++..+-..-..+|.+..... ..-|++|||+|.+-
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------------------- 132 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------------------- 132 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------------------
Confidence 22333332223345666654432 34699999999872
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
...++.||..|+.. +..+++|++|+.+..|.+.++. |+ .+++|..++.++....+...+.
T Consensus 133 -------------~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~ 192 (944)
T PRK14949 133 -------------RSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILT 192 (944)
T ss_pred -------------HHHHHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHH
Confidence 34678899999874 3446777778889999999987 76 6799999999998888887665
Q ss_pred C
Q 009791 414 I 414 (525)
Q Consensus 414 ~ 414 (525)
.
T Consensus 193 ~ 193 (944)
T PRK14949 193 Q 193 (944)
T ss_pred H
Confidence 4
No 74
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.56 E-value=8.9e-14 Score=148.22 Aligned_cols=149 Identities=23% Similarity=0.307 Sum_probs=110.0
Q ss_pred cCCCCccccccChHHHHH---HHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc
Q 009791 204 EHPATFDTLAMEPDLKAT---IMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~---i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l 280 (525)
..|.+|++++|.+++... |...+. . .....+||+||||||||++|+++|+.++.+++.++....
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~----~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIE----A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHH----c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 568999999999887544 444332 1 123479999999999999999999999999999987653
Q ss_pred CChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 281 TRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 281 ~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
+...++.++.... .+.||||||||.+.. .....|+
T Consensus 73 -~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------------------------------~~q~~LL 113 (413)
T PRK13342 73 -GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------------------------------AQQDALL 113 (413)
T ss_pred -cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------------------------------HHHHHHH
Confidence 3455666665542 678999999998731 1234566
Q ss_pred hhhcCCCCCCCCceEEEEec--CCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 355 NFIDGLWSSCGDERIIVFTT--NHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 355 n~idgl~s~~~~~~ivI~TT--N~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
..++. ..+++|++| |....++++|++ |+ ..+.|+.++.++...++...+.
T Consensus 114 ~~le~------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 114 PHVED------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred HHhhc------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHH
Confidence 66654 224555543 334689999999 87 6799999999999999988764
No 75
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.7e-13 Score=148.69 Aligned_cols=155 Identities=20% Similarity=0.362 Sum_probs=115.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+..++.|...+.. ...+..||||||||||||++|+++|+.+.+
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 5789999999999988877765542 134567899999999999999999999853
Q ss_pred ----------ceEEEecCCcCChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhc
Q 009791 271 ----------DVFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRK 334 (525)
Q Consensus 271 ----------~i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 334 (525)
+++.++...-..-..++.+.... ..+-||+|||+|.+.
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------------------- 129 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------------------- 129 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------------------
Confidence 25555554333344556554332 246799999999652
Q ss_pred cccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 335 NKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 335 ~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
...++.||..|+.. +...++|++||+++.+++++.+ |+ .+++|..++.++....+...+..
T Consensus 130 ------------~~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 130 ------------KSAFNALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred ------------HHHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHH
Confidence 23567788888764 2447888889999999999988 66 47999999999988888876654
Q ss_pred c
Q 009791 415 T 415 (525)
Q Consensus 415 ~ 415 (525)
.
T Consensus 191 e 191 (504)
T PRK14963 191 E 191 (504)
T ss_pred c
Confidence 3
No 76
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.8e-13 Score=150.49 Aligned_cols=154 Identities=16% Similarity=0.286 Sum_probs=118.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC--------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-------------- 269 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-------------- 269 (525)
..|.+|++|+|.+.+++.+.+.+.. ...++.||||||+|||||++|+.+|+.++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 5789999999999988877766541 23467899999999999999999999885
Q ss_pred ----------CceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 270 ----------FDVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 270 ----------~~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
.+++.++.++-.+-..++.+...+. ..-|++|||+|.+.
T Consensus 78 ~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------------------- 132 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------------------- 132 (559)
T ss_pred HHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------------------
Confidence 3566777655445566777766543 34699999999773
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..++.. +..+++|++|+.++.+++.+++ |+ ..++|..++.++....+...+.
T Consensus 133 -------------~~a~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 133 -------------TGAFNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred -------------HHHHHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHH
Confidence 22567888888764 3457788888889999999987 76 4688999999988888877664
Q ss_pred C
Q 009791 414 I 414 (525)
Q Consensus 414 ~ 414 (525)
.
T Consensus 193 ~ 193 (559)
T PRK05563 193 K 193 (559)
T ss_pred H
Confidence 3
No 77
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.54 E-value=8.6e-14 Score=142.24 Aligned_cols=150 Identities=25% Similarity=0.346 Sum_probs=108.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChh
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDS 284 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~ 284 (525)
.|.+|++++|++.+.-. ...+.+.+. -..-.+++||||||||||||++.||+..+.+|..++... .+..
T Consensus 19 RP~~lde~vGQ~HLlg~-~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGE-GKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCC-CchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHH
Confidence 58899999998876422 111111121 112347999999999999999999999999999988654 3567
Q ss_pred HHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhc
Q 009791 285 DLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFID 358 (525)
Q Consensus 285 ~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~id 358 (525)
+++.++..+. ++.|||||||+.+-. .....||-.++
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK--------------------------------------~QQD~lLp~vE 129 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFNK--------------------------------------AQQDALLPHVE 129 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhcCh--------------------------------------hhhhhhhhhhc
Confidence 8999987762 479999999998731 11233665555
Q ss_pred CCCCCCCCceEEEE-ecCCC-CCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 359 GLWSSCGDERIIVF-TTNHK-ERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 359 gl~s~~~~~~ivI~-TTN~~-~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
. +.+++|+ ||-.| -.|.|||+. |. +.+++...+.++.++++.+-+
T Consensus 130 ~------G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 130 N------GTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred C------CeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHH
Confidence 3 2355555 66566 689999998 54 458899999999999998843
No 78
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=151.64 Aligned_cols=155 Identities=15% Similarity=0.269 Sum_probs=116.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+.+++.|.+.+. ....+..||||||+|||||++++++|+.+++
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~------------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALT------------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 578999999999888877766543 1234568999999999999999999999875
Q ss_pred ----------------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhh
Q 009791 271 ----------------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAA 328 (525)
Q Consensus 271 ----------------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~ 328 (525)
+++.++..+-..-.++++++.... ..-|++|||+|.+.
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-------------------- 137 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-------------------- 137 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------------
Confidence 344555444334457777776543 23599999999873
Q ss_pred hhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHH
Q 009791 329 GAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLA 408 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~ 408 (525)
....+.||..|+.. ++.+++|++|+.++++.+.++. |+ ..++|..++.++....+
T Consensus 138 ------------------~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L 192 (618)
T PRK14951 138 ------------------NTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHL 192 (618)
T ss_pred ------------------HHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHH
Confidence 23467788888763 3456788888889999999887 65 67999999999888777
Q ss_pred HHHhCCc
Q 009791 409 ANYLGIT 415 (525)
Q Consensus 409 ~~~l~~~ 415 (525)
...+...
T Consensus 193 ~~i~~~e 199 (618)
T PRK14951 193 TQVLAAE 199 (618)
T ss_pred HHHHHHc
Confidence 7766443
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=1.7e-13 Score=144.33 Aligned_cols=155 Identities=19% Similarity=0.237 Sum_probs=113.9
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc----------------
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD---------------- 271 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~---------------- 271 (525)
.|++|+|.+..++.|...+..... .+...+...+.+|||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999998887764332 2344556678899999999999999999999987543
Q ss_pred -------eEEEecCC-cCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhcccc
Q 009791 272 -------VFDLQLGN-VTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKT 337 (525)
Q Consensus 272 -------i~~l~~~~-l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (525)
++.+.... ...-.++++++..+. ...|++|||+|.+..
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------------------- 131 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------------------- 131 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----------------------------
Confidence 23333221 123456777776543 345999999998731
Q ss_pred ccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHH
Q 009791 338 DFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAAN 410 (525)
Q Consensus 338 ~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~ 410 (525)
...+.||..|+.. +...++|++|++++.|+|++++ |+ ..|+|+.|+.++..+.+..
T Consensus 132 ----------~aanaLLk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 132 ----------RAANALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred ----------HHHHHHHHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 2346788888764 2346677777779999999998 76 6899999999998777653
No 80
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.2e-13 Score=150.99 Aligned_cols=154 Identities=16% Similarity=0.309 Sum_probs=116.7
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+.+++.|...+.. ...+..||||||||||||++|+++|+.+++
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5688999999999998877765541 234568999999999999999999999965
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++.++-..-..+++++..+. ...|++|||+|.+.
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------------------- 132 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------------------- 132 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-------------------------
Confidence 345555544344566777776542 34699999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.. ++.+++|++|+.++.+.+.++. |+ ..++|..++.++....+...+.
T Consensus 133 -------------~~a~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 133 -------------KSAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred -------------HHHHHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHH
Confidence 23567789888874 3457788888889999988877 65 6799999999998877776664
Q ss_pred C
Q 009791 414 I 414 (525)
Q Consensus 414 ~ 414 (525)
.
T Consensus 193 ~ 193 (527)
T PRK14969 193 Q 193 (527)
T ss_pred H
Confidence 3
No 81
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.7e-13 Score=155.63 Aligned_cols=154 Identities=20% Similarity=0.293 Sum_probs=116.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
+.|.+|++|+|.+.+++.|...+.. -..+..||||||+|||||++++++|+.|++
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 7899999999999988877665531 123567999999999999999999999964
Q ss_pred -------------ceEEEecCCcCChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhh
Q 009791 271 -------------DVFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331 (525)
Q Consensus 271 -------------~i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (525)
+++.++..+...-.++|++.... ...-|+||||+|.+-
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt----------------------- 133 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT----------------------- 133 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------------------
Confidence 34455544433445566654332 245699999999873
Q ss_pred hhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
....+.||+.|+.. ....++|++|+.+++|.+.|+. |. .+++|..++.++...++...
T Consensus 134 ---------------~~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 134 ---------------PQGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERI 191 (824)
T ss_pred ---------------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHH
Confidence 23567899999875 3457888888999999999887 65 67899999999988888877
Q ss_pred hCC
Q 009791 412 LGI 414 (525)
Q Consensus 412 l~~ 414 (525)
+..
T Consensus 192 l~~ 194 (824)
T PRK07764 192 CAQ 194 (824)
T ss_pred HHH
Confidence 643
No 82
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3.2e-13 Score=141.77 Aligned_cols=154 Identities=18% Similarity=0.331 Sum_probs=112.7
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC------------c
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------D 271 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------~ 271 (525)
+.|.+|++++|.+..++.+.+.+.. ...+.+||||||||+|||++++++|+.+.. +
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 6789999999999988777665531 134578999999999999999999998853 2
Q ss_pred eEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCch
Q 009791 272 VFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQ 345 (525)
Q Consensus 272 i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (525)
++.++.....+...++.++..+. .+.||+|||+|.+.
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------------------------------- 121 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------------------------------- 121 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-------------------------------------
Confidence 34444333333467777776432 35699999999662
Q ss_pred hHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 346 HMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 346 ~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
...++.|+..++.. +...++|++|+.+..+.+++.+ |+ ..++++.|+.++....+...+..
T Consensus 122 -~~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 122 -SAAFNAFLKTLEEP----PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred -HHHHHHHHHHHhCC----CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHH
Confidence 12456788877763 2346777788888999999987 54 35899999999888777765543
No 83
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2e-13 Score=151.59 Aligned_cols=153 Identities=18% Similarity=0.312 Sum_probs=115.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD------------ 271 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~------------ 271 (525)
+.|.+|++|+|.+.+++.|...+.. ...+..||||||||||||++|+++|+.+.+.
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 6789999999999988877776641 2356789999999999999999999988542
Q ss_pred ---------eEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccc
Q 009791 272 ---------VFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNK 336 (525)
Q Consensus 272 ---------i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (525)
++.++..+-.+...++.+...+. ...|++|||+|.+-
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT---------------------------- 131 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS---------------------------- 131 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC----------------------------
Confidence 33344322223455666665543 45699999999762
Q ss_pred cccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 337 TDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 337 ~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.. +..+++|++|+.++.|++.+++ |+ ..++|..++.++....+...+.
T Consensus 132 ----------~~A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 132 ----------KSAFNALLKTLEEP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred ----------HHHHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHH
Confidence 22577889888874 3457888888999999999988 76 4799999999998877776554
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.6e-13 Score=149.73 Aligned_cols=153 Identities=14% Similarity=0.290 Sum_probs=115.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++++|.+..++.+...+. .-..+++|||+||||||||++|+++|+.+.+
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~------------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAIL------------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 678999999999998887766542 1233578999999999999999999999853
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++..+...-..++.+..... ..-|++|||+|.+-
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------------------- 132 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------------------- 132 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-------------------------
Confidence 455566544344456777665432 34599999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.. ++..++|++|+.++.|.+++++ |+ ..++|..++.++....+...+.
T Consensus 133 -------------~~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 133 -------------TSAWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred -------------HHHHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHH
Confidence 12456788888864 3457888888889999999988 76 4689999999988877776654
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.4e-13 Score=148.01 Aligned_cols=154 Identities=16% Similarity=0.290 Sum_probs=114.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++++|.+..++.|...+.. ...+..||||||||||||++|+++|+.+++
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 5688999999999998877665531 124567999999999999999999998864
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++..+-....+++.++.... ..-|++|||+|.+-
T Consensus 78 sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------------------- 132 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------------------- 132 (546)
T ss_pred HHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-------------------------
Confidence 555565543334455666654432 45699999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.. ++.+++|++|+.+..+.+.++. |. ..++|..++.++....+...+.
T Consensus 133 -------------~~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~ 192 (546)
T PRK14957 133 -------------KQSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILA 192 (546)
T ss_pred -------------HHHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHH
Confidence 23567889888874 3446777777778989988887 66 6799999999988777776554
Q ss_pred C
Q 009791 414 I 414 (525)
Q Consensus 414 ~ 414 (525)
.
T Consensus 193 ~ 193 (546)
T PRK14957 193 K 193 (546)
T ss_pred H
Confidence 3
No 86
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=4.1e-14 Score=162.21 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=111.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceEE
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVFD 274 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~~ 274 (525)
.|..++.++|.++....+++.+. ...+.+++|+||||||||++|+++|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 46789999998887665555442 1235688999999999999999999986 366888
Q ss_pred EecCCcCC--------hhHHHHHHHHhC---CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCC
Q 009791 275 LQLGNVTR--------DSDLRTLLLSTG---NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGK 343 (525)
Q Consensus 275 l~~~~l~~--------~~~L~~l~~~~~---~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
++++.+.. +..++.++.... .++|||||||+++++..+. ..
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~--~~-------------------------- 300 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ--AG-------------------------- 300 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc--cc--------------------------
Confidence 88877631 257888887653 5899999999999752110 00
Q ss_pred chhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 344 GQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 344 ~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
. ....+-|+..+. .+++.+|+||+..+ .+||||.| ||. .|.++.|+.++...|++.+..
T Consensus 301 ~--~d~~n~Lkp~l~------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 301 Q--GDAANLLKPALA------RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred c--ccHHHHhhHHhh------CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 0 001112333222 24577888887643 48999999 995 799999999999999765543
No 87
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.53 E-value=2.5e-14 Score=161.38 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=107.8
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceEEEec
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVFDLQL 277 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~~l~~ 277 (525)
.++.++|.++..+.+++.+.. ..+..+||+||||||||++++++|... +..++.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 467788888777777665432 234678999999999999999999874 567777776
Q ss_pred CCcC--------ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhH
Q 009791 278 GNVT--------RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHM 347 (525)
Q Consensus 278 ~~l~--------~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (525)
+.+. .+..++.++... ..++||||||||.+++.... . +...
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~---------------------------~g~~ 301 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--S---------------------------GGQV 301 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--C---------------------------CcHH
Confidence 6543 134566666544 46889999999999752110 0 0001
Q ss_pred HHHHHHhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 348 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 348 ~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
. +. |.+..+.. .+++.+|++||.++ .+||||.| ||+ .|+++.|+.+++..|++.+..
T Consensus 302 d-~~---nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 302 D-AA---NLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred H-HH---HHHHHHHh--CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 1 11 12222212 24588889888765 57999999 996 799999999999999997654
No 88
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3e-13 Score=148.41 Aligned_cols=155 Identities=23% Similarity=0.356 Sum_probs=116.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+.+++.|...+. . -..+..||||||+|||||++++++|+.+++
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~----~--------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALD----A--------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 578999999999988887766553 1 134567999999999999999999998863
Q ss_pred -------------ceEEEecCCcCChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhh
Q 009791 271 -------------DVFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331 (525)
Q Consensus 271 -------------~i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (525)
+++.++.++..+-..++++.... ...-|++|||+|.+-
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt----------------------- 131 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT----------------------- 131 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------------------
Confidence 35555554433445566554333 234699999999772
Q ss_pred hhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
....+.||..|+.. ++.+++|++|+.+++|.++++. |. .+++|..++.++....+..+
T Consensus 132 ---------------~~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 132 ---------------TAGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARI 189 (584)
T ss_pred ---------------HHHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHH
Confidence 22567889888874 3457888888999999999987 64 67999999999888887776
Q ss_pred hCCc
Q 009791 412 LGIT 415 (525)
Q Consensus 412 l~~~ 415 (525)
+...
T Consensus 190 ~~~e 193 (584)
T PRK14952 190 CEQE 193 (584)
T ss_pred HHHc
Confidence 6543
No 89
>PRK06893 DNA replication initiation factor; Validated
Probab=99.52 E-value=1.8e-13 Score=134.40 Aligned_cols=160 Identities=11% Similarity=0.194 Sum_probs=100.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCC
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGN 279 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~ 279 (525)
...+.+||+.++.+.. .....+.. .........++||||||||||+|++|+|+++ +..+..+++..
T Consensus 9 ~~~~~~fd~f~~~~~~--~~~~~~~~---------~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 9 QIDDETLDNFYADNNL--LLLDSLRK---------NFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCcccccccccCChH--HHHHHHHH---------HhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 4567799999866542 12222211 1111122357999999999999999999986 45666666543
Q ss_pred cCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC
Q 009791 280 VTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG 359 (525)
Q Consensus 280 l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg 359 (525)
.. ....+.+....+..+|+||||+.+.+ ....... |++.++.
T Consensus 78 ~~--~~~~~~~~~~~~~dlLilDDi~~~~~---------------------------------~~~~~~~---l~~l~n~ 119 (229)
T PRK06893 78 SQ--YFSPAVLENLEQQDLVCLDDLQAVIG---------------------------------NEEWELA---IFDLFNR 119 (229)
T ss_pred hh--hhhHHHHhhcccCCEEEEeChhhhcC---------------------------------ChHHHHH---HHHHHHH
Confidence 21 12224455556778999999997742 0111222 4444443
Q ss_pred CCCCCCCceEEEEecC-CCCCCC---ccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 360 LWSSCGDERIIVFTTN-HKERLD---PALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 360 l~s~~~~~~ivI~TTN-~~~~LD---paLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
.... +..++|+|+| .|..++ |.|.++.+.+..++++.|+.+.+.++++....
T Consensus 120 ~~~~--~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 120 IKEQ--GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred HHHc--CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 3222 2245555554 566554 89998556678899999999999999987664
No 90
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.52 E-value=4.9e-14 Score=162.00 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=114.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceEE
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVFD 274 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~~ 274 (525)
.|..++.++|.++..+.+++.|. ...+..++|+||||||||++++++|..+ +++++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 46679999999887666665543 2235678999999999999999999998 789999
Q ss_pred EecCCcCC--------hhHHHHHHHHh---CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCC
Q 009791 275 LQLGNVTR--------DSDLRTLLLST---GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGK 343 (525)
Q Consensus 275 l~~~~l~~--------~~~L~~l~~~~---~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
++++.+.. +..++.+|... ..++||||||||.+++. +...+
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~--~~~~~-------------------------- 291 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGA--GKADG-------------------------- 291 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccC--CCCcc--------------------------
Confidence 99887632 24577777653 36899999999999751 11110
Q ss_pred chhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 344 GQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 344 ~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
. ...+.+|. .... .+++.+|+||+..+ .+|+||.| ||+ .|.++.|+.+++..|++.+...
T Consensus 292 ~---~d~~~~lk---p~l~--~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 292 A---MDAGNMLK---PALA--RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred c---hhHHHHhc---chhh--cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 0 01112221 1112 24688888888876 48999999 997 5899999999999999876544
No 91
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.52 E-value=7.9e-14 Score=160.72 Aligned_cols=202 Identities=17% Similarity=0.192 Sum_probs=130.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceEE
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVFD 274 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~~ 274 (525)
.|..++.++|.++..+.+++.+. ...+...+|+||||||||++++++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 45678999998887666655442 2335678999999999999999999986 678999
Q ss_pred EecCCcCC--------hhHHHHHHHHh---CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCC
Q 009791 275 LQLGNVTR--------DSDLRTLLLST---GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGK 343 (525)
Q Consensus 275 l~~~~l~~--------~~~L~~l~~~~---~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
++++.+.. +..++.+|... ..++||||||||.+++. +...
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~--g~~~--------------------------- 285 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGA--GKAE--------------------------- 285 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcC--CCCc---------------------------
Confidence 98877631 23677777655 35899999999998641 1000
Q ss_pred chhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCC
Q 009791 344 GQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCE 418 (525)
Q Consensus 344 ~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~ 418 (525)
+ .....+-|...+ . .+.+.+|++||..+ .+|+||.| ||. .|.++.|+.+++..|++.+.......
T Consensus 286 ~-~~d~~~~Lk~~l----~--~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~ 355 (852)
T TIGR03346 286 G-AMDAGNMLKPAL----A--RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVH 355 (852)
T ss_pred c-hhHHHHHhchhh----h--cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccc
Confidence 0 011112222222 1 24577888887663 47999999 996 58999999999999998765443222
Q ss_pred cc---cHHHHHHHHhhcCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q 009791 419 HK---LVAEIETLLKTINITPAQVAEQFMKSEDADVALAALIKLLKEKER 465 (525)
Q Consensus 419 ~~---~~~~i~~l~~~~~~tpadi~~~l~~~~~~~~al~~l~~al~~~~~ 465 (525)
|. ....+...+. +|...|.+ +.-|+.|++-|.+++...+.
T Consensus 356 ~~v~~~d~~i~~~~~---ls~~yi~~----r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 356 HGVRITDPAIVAAAT---LSHRYITD----RFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred cCCCCCHHHHHHHHH---hccccccc----cCCchHHHHHHHHHHHHHHh
Confidence 22 2333333332 12111111 22377777777777765544
No 92
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.6e-13 Score=147.61 Aligned_cols=154 Identities=18% Similarity=0.296 Sum_probs=113.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD------------ 271 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~------------ 271 (525)
..|.+|++|+|.+.+++.|...+. . ...+..|||+||||||||++|+++|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~----~--------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQ----E--------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHH----c--------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 678999999999988777766553 1 1234689999999999999999999999752
Q ss_pred ------------eEEEecCCcCChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 272 ------------VFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 272 ------------i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
++.++...-..-..++.+.... ....||+|||+|.+-
T Consensus 78 sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------------------- 132 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------------------- 132 (624)
T ss_pred HHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-------------------------
Confidence 5555543322334455443222 245799999999772
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.. ...+++|++||.++.+.+.+++ |+ .+|+|+.++.++....+...+.
T Consensus 133 -------------~~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~ 192 (624)
T PRK14959 133 -------------REAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLG 192 (624)
T ss_pred -------------HHHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHH
Confidence 22467788888863 2347888999999999999887 76 4789999999998877776554
Q ss_pred C
Q 009791 414 I 414 (525)
Q Consensus 414 ~ 414 (525)
.
T Consensus 193 ~ 193 (624)
T PRK14959 193 R 193 (624)
T ss_pred H
Confidence 3
No 93
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.4e-13 Score=148.13 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=115.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+.+++.|...+.. ...+..||||||||||||++++++|+.+++
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 5689999999999998888776541 235678999999999999999999999864
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++..+-....+++.+..... ..-|++|||+|.+.
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------------------- 132 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------------------- 132 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-------------------------
Confidence 245555444334456676665442 34599999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.. ++.+++|++||.+++|.+.++. |+ ..++|..++.++....+...+.
T Consensus 133 -------------~~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~ 192 (576)
T PRK14965 133 -------------TNAFNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIAD 192 (576)
T ss_pred -------------HHHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHH
Confidence 23567899998874 3457888899999999999987 65 5788998988887777666554
Q ss_pred C
Q 009791 414 I 414 (525)
Q Consensus 414 ~ 414 (525)
.
T Consensus 193 ~ 193 (576)
T PRK14965 193 Q 193 (576)
T ss_pred H
Confidence 3
No 94
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.49 E-value=3.4e-13 Score=153.19 Aligned_cols=158 Identities=25% Similarity=0.249 Sum_probs=115.0
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHH----
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDL---- 286 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L---- 286 (525)
+..|.+++|+.|++.+..... .+......++|+||||||||++++++|+.++.+++.++++.+.+...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 388999999999887763322 122234468999999999999999999999999999998877544333
Q ss_pred -----------HHHHHHhC-CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 287 -----------RTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 287 -----------~~l~~~~~-~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
.+.+..+. ...||+|||||.+.. +. .....+.||
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~--~~--------------------------------~g~~~~aLl 441 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS--DM--------------------------------RGDPASALL 441 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccc--cc--------------------------------CCCHHHHHH
Confidence 33344433 345899999998842 00 011345677
Q ss_pred hhhcCCC----C-------CCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 355 NFIDGLW----S-------SCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 355 n~idgl~----s-------~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
..+|.-. . ..-..+++|+|||.. .|+|||+. ||. .|.++.++.++..+|+++|+.
T Consensus 442 evld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 442 EVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred HHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 7766310 0 011458999999988 49999999 995 689999999999999999984
No 95
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=7.7e-13 Score=143.08 Aligned_cols=155 Identities=16% Similarity=0.274 Sum_probs=113.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++++|.+.+.+.|...+. ....+..||||||||+|||++|+++|..+++
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~------------~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVK------------LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 578899999999998887766653 1234668999999999999999999999863
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++.++-.....++.+.... ..+-|++|||+|.+.
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------------------- 132 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------------------- 132 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-------------------------
Confidence 34445544333334455554333 245799999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..++.. +...++|++|+.++.+++++.+ |+ ..+.|..++.++....+...+.
T Consensus 133 -------------~~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k 192 (486)
T PRK14953 133 -------------KEAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICN 192 (486)
T ss_pred -------------HHHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHH
Confidence 12456778887764 2346777777888899999887 65 4699999999998888887665
Q ss_pred Cc
Q 009791 414 IT 415 (525)
Q Consensus 414 ~~ 415 (525)
..
T Consensus 193 ~e 194 (486)
T PRK14953 193 EE 194 (486)
T ss_pred Hc
Confidence 43
No 96
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=9.9e-13 Score=141.24 Aligned_cols=153 Identities=18% Similarity=0.240 Sum_probs=112.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+..++.|...+.. ...+..||||||||+|||++|+++|+.+.+
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 5789999999999988877665531 235678999999999999999999998853
Q ss_pred ------------ceEEEecCCcCChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhh
Q 009791 271 ------------DVFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAV 332 (525)
Q Consensus 271 ------------~i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (525)
+++.++.....+-..++.+.... ..+.|++|||+|.+.
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------------------ 134 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------------------ 134 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------------------
Confidence 34445433322334555443322 357899999999772
Q ss_pred hccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 333 RKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
....+.|+..|+.. ++..++|++||.+..|.+++.. |+ ..++|..++.++....+...+
T Consensus 135 --------------~~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 135 --------------KEAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIA 193 (451)
T ss_pred --------------HHHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHH
Confidence 12356788888874 2356788888999999999988 76 468999999998877777655
Q ss_pred C
Q 009791 413 G 413 (525)
Q Consensus 413 ~ 413 (525)
.
T Consensus 194 ~ 194 (451)
T PRK06305 194 K 194 (451)
T ss_pred H
Confidence 4
No 97
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.48 E-value=3.7e-13 Score=131.22 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=112.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCC
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGN 279 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~ 279 (525)
...+.+|++.+.. ..+.+++.+..+.. ...++.++|+||||||||++++++++++ +.+++.+++..
T Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 8 LPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 3455688888732 33445555544432 1235689999999999999999999887 46788888877
Q ss_pred cCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC
Q 009791 280 VTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG 359 (525)
Q Consensus 280 l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg 359 (525)
+.. .....+.......+|+|||+|.+.. .. .....|...++.
T Consensus 77 ~~~--~~~~~~~~~~~~~lLvIDdi~~l~~---------------------------------~~---~~~~~L~~~l~~ 118 (226)
T TIGR03420 77 LAQ--ADPEVLEGLEQADLVCLDDVEAIAG---------------------------------QP---EWQEALFHLYNR 118 (226)
T ss_pred HHH--hHHHHHhhcccCCEEEEeChhhhcC---------------------------------Ch---HHHHHHHHHHHH
Confidence 643 2234444445667999999997631 00 012234444443
Q ss_pred CCCCCCCceEEEEecC-CCCCCC---ccccCCCce--eeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcC
Q 009791 360 LWSSCGDERIIVFTTN-HKERLD---PALLRPGRM--DMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTIN 433 (525)
Q Consensus 360 l~s~~~~~~ivI~TTN-~~~~LD---paLlRpGRf--d~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~ 433 (525)
.... +. .+|+|+| .+..++ +.|.+ |+ ..+|.++.|+.+++..+++.+....+ -....+.++.|+...+
T Consensus 119 ~~~~--~~-~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~ 192 (226)
T TIGR03420 119 VREA--GG-RLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGS 192 (226)
T ss_pred HHHc--CC-eEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcc
Confidence 3221 12 3445555 444433 67776 55 57899999999999999887764321 1122333444554445
Q ss_pred CCHHHHHHH
Q 009791 434 ITPAQVAEQ 442 (525)
Q Consensus 434 ~tpadi~~~ 442 (525)
-++.++.++
T Consensus 193 gn~r~L~~~ 201 (226)
T TIGR03420 193 RDMGSLMAL 201 (226)
T ss_pred CCHHHHHHH
Confidence 555555443
No 98
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=7e-13 Score=132.89 Aligned_cols=130 Identities=25% Similarity=0.209 Sum_probs=93.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHH---------------------------------HHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLR---------------------------------TLL 290 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~---------------------------------~l~ 290 (525)
.+.+||+||||||||++|+++|..+|.+++.+++..-....++. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 35799999999999999999999999999999887533222210 112
Q ss_pred HHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCC-CC------
Q 009791 291 LSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLW-SS------ 363 (525)
Q Consensus 291 ~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~-s~------ 363 (525)
....++.+|+|||||.+- ..+.+.|+..|+.-. .-
T Consensus 101 ~A~~~g~~lllDEi~r~~--------------------------------------~~~q~~Ll~~Le~~~~~i~~~~~~ 142 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSK--------------------------------------PETNNVLLSVFEEGVLELPGKRGT 142 (262)
T ss_pred HHHHcCCEEEEcchhhCC--------------------------------------HHHHHHHHHHhcCCeEEccCCCCC
Confidence 223456899999999752 224555666665321 00
Q ss_pred -----CCCceEEEEecCCC-----CCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 364 -----CGDERIIVFTTNHK-----ERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 364 -----~~~~~ivI~TTN~~-----~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
...+..||+|+|.. ..++++|++ || ..+++++|+.++-.+|+....+.
T Consensus 143 ~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~ 200 (262)
T TIGR02640 143 SRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDV 200 (262)
T ss_pred CceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCC
Confidence 11245689999976 367899999 98 68999999999999999887643
No 99
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1e-12 Score=145.03 Aligned_cols=155 Identities=17% Similarity=0.305 Sum_probs=116.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD------------ 271 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~------------ 271 (525)
+.|.+|++|+|.+.+++.|...+.. | ..+.+||||||+|+|||++|+++|+.+++.
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 6789999999999998887775531 2 346689999999999999999999998653
Q ss_pred -----------------eEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhh
Q 009791 272 -----------------VFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAA 328 (525)
Q Consensus 272 -----------------i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~ 328 (525)
++.++..+...-.++++++..+. ..-|++|||+|.+.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-------------------- 145 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-------------------- 145 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------------
Confidence 23333333334466777765542 45699999999762
Q ss_pred hhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHH
Q 009791 329 GAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLA 408 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~ 408 (525)
....+.||..|+.. ++.+++|++|+.++++.+.++. |+ ..++|..++.++....+
T Consensus 146 ------------------~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L 200 (598)
T PRK09111 146 ------------------TAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHL 200 (598)
T ss_pred ------------------HHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHH
Confidence 23467888888864 3447788888888899999887 66 57999999999988888
Q ss_pred HHHhCCc
Q 009791 409 ANYLGIT 415 (525)
Q Consensus 409 ~~~l~~~ 415 (525)
...+...
T Consensus 201 ~~i~~ke 207 (598)
T PRK09111 201 SRIAAKE 207 (598)
T ss_pred HHHHHHc
Confidence 7776543
No 100
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.6e-12 Score=140.97 Aligned_cols=179 Identities=19% Similarity=0.246 Sum_probs=125.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC--------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-------------- 269 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-------------- 269 (525)
..|.+|++|+|.+.+++.|...+. ....+..||||||||+|||++|+++|+.+.
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~------------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALD------------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 578999999999999888777653 123567899999999999999999999873
Q ss_pred ----------CceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 270 ----------FDVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 270 ----------~~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
.+++.++.++-..-..++.+..... ..-|++|||+|.+-
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------------------- 130 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------------------- 130 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------------------
Confidence 2355555443233467777775532 24599999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..|+.. +....+|++|+.+..|.++++. |. .+++|..++.++....+...+.
T Consensus 131 -------------~~A~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 131 -------------KEAFNALLKTLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred -------------HHHHHHHHHHHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHH
Confidence 23567889888875 2346777778888999999998 74 6899999999988777776665
Q ss_pred CcCCCcccHHHHHHHHhhcCCCHHHHH
Q 009791 414 ITDCEHKLVAEIETLLKTINITPAQVA 440 (525)
Q Consensus 414 ~~~~~~~~~~~i~~l~~~~~~tpadi~ 440 (525)
..+. ......++.++..++-++.++.
T Consensus 191 ~EGi-~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 191 KEGV-SYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred HcCC-CCCHHHHHHHHHHcCCcHHHHH
Confidence 4321 1122334444444444444433
No 101
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.47 E-value=1.9e-12 Score=133.88 Aligned_cols=154 Identities=13% Similarity=0.222 Sum_probs=103.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC-----CceEEEecC
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-----FDVFDLQLG 278 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-----~~i~~l~~~ 278 (525)
+.|.+|++++|.++.++.+...+. . +. ..++|||||||||||++++++|+++. .++..+++.
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVD----S-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHh----C-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 679999999999988777766443 1 11 12699999999999999999999984 345666665
Q ss_pred CcCC--------------------------hhHHHHHHHHh-------CCCeEEEEeccccccCCCCCCCCCCCCchhhh
Q 009791 279 NVTR--------------------------DSDLRTLLLST-------GNRSILVIEDIDCSVDLPDRRNGNENNADAQS 325 (525)
Q Consensus 279 ~l~~--------------------------~~~L~~l~~~~-------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~ 325 (525)
++.. ...++.++... ..+.+|+|||+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~---------------- 139 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE---------------- 139 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH----------------
Confidence 4310 11222222221 2356999999996621
Q ss_pred HhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHH
Q 009791 326 KAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFR 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~ 405 (525)
.....|+..++.... ...+|+||+.+..+.+.|.. |+ ..+++..|+.++..
T Consensus 140 ----------------------~~~~~L~~~le~~~~----~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~ 190 (337)
T PRK12402 140 ----------------------DAQQALRRIMEQYSR----TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELV 190 (337)
T ss_pred ----------------------HHHHHHHHHHHhccC----CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHH
Confidence 123345555554322 23466677777788888887 65 56899999999998
Q ss_pred HHHHHHhCCc
Q 009791 406 LLAANYLGIT 415 (525)
Q Consensus 406 ~L~~~~l~~~ 415 (525)
.++...+...
T Consensus 191 ~~l~~~~~~~ 200 (337)
T PRK12402 191 DVLESIAEAE 200 (337)
T ss_pred HHHHHHHHHc
Confidence 8888876544
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=7.6e-13 Score=140.31 Aligned_cols=153 Identities=14% Similarity=0.282 Sum_probs=110.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+.+++.|...+. . | ..+..||||||||||||++|+++|+.+.+
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~----~-------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLR----M-------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHH----h-------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 578999999999999887766553 1 1 34668999999999999999999999965
Q ss_pred -------------------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhh
Q 009791 271 -------------------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQS 325 (525)
Q Consensus 271 -------------------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~ 325 (525)
+++.++......-..++.+..... ..-|++|||+|.+.
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------------- 140 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------------- 140 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------------
Confidence 233333333233456666655542 45699999999772
Q ss_pred HhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHH
Q 009791 326 KAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFR 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~ 405 (525)
....+.|+..++.. +...++|++|+.+..+-+++.+ |.. .++|..++.++..
T Consensus 141 ---------------------~~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~ 192 (397)
T PRK14955 141 ---------------------IAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQ 192 (397)
T ss_pred ---------------------HHHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHH
Confidence 12455678877753 2346677777788899888887 653 6899999988887
Q ss_pred HHHHHHhC
Q 009791 406 LLAANYLG 413 (525)
Q Consensus 406 ~L~~~~l~ 413 (525)
..+...+.
T Consensus 193 ~~l~~~~~ 200 (397)
T PRK14955 193 QQLQGICE 200 (397)
T ss_pred HHHHHHHH
Confidence 77776654
No 103
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.46 E-value=8.4e-13 Score=144.65 Aligned_cols=202 Identities=16% Similarity=0.219 Sum_probs=125.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceE
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVF 273 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~ 273 (525)
..|.+|++++|.+...+.+...+. .+.+..+|||||||||||++|+++.+++ +.+++
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 578899999999988777654321 1235689999999999999999998753 35788
Q ss_pred EEecCCcC-ChhHHH-HHH--------------------------HHhCCCeEEEEeccccccCCCCCCCCCCCCchhhh
Q 009791 274 DLQLGNVT-RDSDLR-TLL--------------------------LSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQS 325 (525)
Q Consensus 274 ~l~~~~l~-~~~~L~-~l~--------------------------~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~ 325 (525)
.++|+... ++..+. .++ .......+|||||||.+-.
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~---------------- 189 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP---------------- 189 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH----------------
Confidence 89987421 111111 000 0112457999999998731
Q ss_pred HhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC--------CC-----------------CCCCceEEEEecCCCCCC
Q 009791 326 KAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL--------WS-----------------SCGDERIIVFTTNHKERL 380 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl--------~s-----------------~~~~~~ivI~TTN~~~~L 380 (525)
...+.||..|+.- .+ .+.+-++|++|||.++.|
T Consensus 190 ----------------------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L 247 (531)
T TIGR02902 190 ----------------------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEI 247 (531)
T ss_pred ----------------------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccC
Confidence 1223333333210 00 011236777889999999
Q ss_pred CccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcCCCHHHHHHHHHc-------CCCHHHHH
Q 009791 381 DPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTINITPAQVAEQFMK-------SEDADVAL 453 (525)
Q Consensus 381 DpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~~tpadi~~~l~~-------~~~~~~al 453 (525)
+|+|++ |+ ..|+|+.++.+++.+|+++.+...+ ....++.-+++.....+.+++.+++.. .....+..
T Consensus 248 ~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~--i~is~~al~~I~~y~~n~Rel~nll~~Aa~~A~~~~~~~It~ 322 (531)
T TIGR02902 248 PPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIG--INLEKHALELIVKYASNGREAVNIVQLAAGIALGEGRKRILA 322 (531)
T ss_pred ChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCcEEcH
Confidence 999998 87 4688999999999999999886542 222222222333333355666554432 12223455
Q ss_pred HHHHHHHH
Q 009791 454 AALIKLLK 461 (525)
Q Consensus 454 ~~l~~al~ 461 (525)
+++.+++.
T Consensus 323 ~dI~~vl~ 330 (531)
T TIGR02902 323 EDIEWVAE 330 (531)
T ss_pred HHHHHHhC
Confidence 66666654
No 104
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.5e-12 Score=143.01 Aligned_cols=153 Identities=18% Similarity=0.293 Sum_probs=114.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+..++.|...+.. ...+..||||||||+|||++|+++|+.+++
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 5789999999999998887776541 134568999999999999999999999864
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++..+-..-..++.+...+ ...-|++|||+|.+-
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------------------- 132 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------------------- 132 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-------------------------
Confidence 34444433322335666665332 245699999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.||..++.. +...++|++|+.++.|.++|+. |+. .++|..++.++....+...+.
T Consensus 133 -------------~~a~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 133 -------------NSAFNALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred -------------HHHHHHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHH
Confidence 23567788888863 3457888888889999999988 764 589999999998887777663
No 105
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.46 E-value=2.1e-12 Score=123.89 Aligned_cols=172 Identities=19% Similarity=0.269 Sum_probs=139.4
Q ss_pred ceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEE
Q 009791 198 WDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFD 274 (525)
Q Consensus 198 w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~ 274 (525)
..+++-.+|..+.+|+|.+.+|+.+.+....|+... +-..+||+|..|||||||++|+-+++ +..++.
T Consensus 48 L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVE 118 (287)
T COG2607 48 LEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVE 118 (287)
T ss_pred ccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEE
Confidence 345666777899999999999999999999888742 34689999999999999999999888 678888
Q ss_pred EecCCcCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 275 LQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 275 l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
++-.++.+-..|.+.+...+.+-|||+||+- ++ ........|-
T Consensus 119 V~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLS--Fe-----------------------------------~gd~~yK~LK 161 (287)
T COG2607 119 VDKEDLATLPDLVELLRARPEKFILFCDDLS--FE-----------------------------------EGDDAYKALK 161 (287)
T ss_pred EcHHHHhhHHHHHHHHhcCCceEEEEecCCC--CC-----------------------------------CCchHHHHHH
Confidence 9888888888899999999999999999865 21 0012334466
Q ss_pred hhhcCCCCCCCCceEEEEecCCCCCCCcccc--------------------CCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 355 NFIDGLWSSCGDERIIVFTTNHKERLDPALL--------------------RPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 355 n~idgl~s~~~~~~ivI~TTN~~~~LDpaLl--------------------RpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
..+||-....+.+|+|.+|+|+...|+.-.. =..||..-+.|..|+.++..+|+..|...
T Consensus 162 s~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 162 SALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred HHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 7788888888899999999998877653222 12489999999999999999999998864
Q ss_pred c
Q 009791 415 T 415 (525)
Q Consensus 415 ~ 415 (525)
.
T Consensus 242 ~ 242 (287)
T COG2607 242 F 242 (287)
T ss_pred c
Confidence 4
No 106
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.5e-12 Score=142.14 Aligned_cols=153 Identities=14% Similarity=0.267 Sum_probs=111.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++++|.+.+++.|...+. .-..+.+|||+||||||||++|+++|+.+.+
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 578999999999998887666442 1245678999999999999999999999976
Q ss_pred -------------------ceEEEecCCcCChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhh
Q 009791 271 -------------------DVFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQS 325 (525)
Q Consensus 271 -------------------~i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~ 325 (525)
+++.++..+.....+++.+.... ...-|++|||+|.+.
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt----------------- 140 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS----------------- 140 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------------
Confidence 23333333333345677766555 245699999999772
Q ss_pred HhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHH
Q 009791 326 KAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFR 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~ 405 (525)
....+.||..|+.. ++..++|++|+.++.|.+++.. |. ..|+|..++.++..
T Consensus 141 ---------------------~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~ 192 (620)
T PRK14954 141 ---------------------TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQ 192 (620)
T ss_pred ---------------------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHH
Confidence 12356788888874 2346777777888999999887 54 57999999998877
Q ss_pred HHHHHHhC
Q 009791 406 LLAANYLG 413 (525)
Q Consensus 406 ~L~~~~l~ 413 (525)
..+...+.
T Consensus 193 ~~L~~i~~ 200 (620)
T PRK14954 193 SQLQMICR 200 (620)
T ss_pred HHHHHHHH
Confidence 76666553
No 107
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.9e-12 Score=142.26 Aligned_cols=153 Identities=20% Similarity=0.307 Sum_probs=113.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++++|.+++++.|...+.. | ....+||||||||||||++|+++|+.+++
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 6789999999999988887766541 1 23458999999999999999999999865
Q ss_pred -------------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhh
Q 009791 271 -------------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331 (525)
Q Consensus 271 -------------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (525)
+++.++......-..+++++..+. ..-|++|||+|.+-
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt----------------------- 134 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS----------------------- 134 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------------------
Confidence 344455443334567777776543 34699999999762
Q ss_pred hhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
....+.||..|+.. +...++|++|++++.+.|+|+. |+ ..++|..++.++....+...
T Consensus 135 ---------------~~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~i 192 (620)
T PRK14948 135 ---------------TAAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEI 192 (620)
T ss_pred ---------------HHHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHH
Confidence 23567889999863 3457788888889999999987 66 56888888888766655554
Q ss_pred hC
Q 009791 412 LG 413 (525)
Q Consensus 412 l~ 413 (525)
..
T Consensus 193 a~ 194 (620)
T PRK14948 193 AE 194 (620)
T ss_pred HH
Confidence 43
No 108
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.43 E-value=4.5e-12 Score=134.25 Aligned_cols=102 Identities=23% Similarity=0.273 Sum_probs=70.2
Q ss_pred Ccc-ccccChHHHHHHHHHHHHHHHhHHHHHH--hCC-CCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC-
Q 009791 208 TFD-TLAMEPDLKATIMEDLDRFVRRKEFYKR--VGR-AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR- 282 (525)
Q Consensus 208 ~f~-~l~g~~~~K~~i~~~l~~fl~~~~~y~~--~g~-~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~- 282 (525)
.++ .|+|.++.|+.+...+....++-..... -+. ..+.++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 354 4899999999886665433222110000 011 23568999999999999999999999999999999987642
Q ss_pred -------hhHHHHHHHH------hCCCeEEEEeccccccC
Q 009791 283 -------DSDLRTLLLS------TGNRSILVIEDIDCSVD 309 (525)
Q Consensus 283 -------~~~L~~l~~~------~~~~sIL~iDdID~~~~ 309 (525)
+..+..++.. ...++||||||||.+..
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 1223444332 23689999999999853
No 109
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.7e-12 Score=141.34 Aligned_cols=154 Identities=16% Similarity=0.265 Sum_probs=112.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++|+|.+..++.|...+.. ...+..||||||||+|||++++++|+.+++
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 6789999999999999887665531 123567999999999999999999998853
Q ss_pred ------------ceEEEecCCcCChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhh
Q 009791 271 ------------DVFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAV 332 (525)
Q Consensus 271 ------------~i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (525)
+++.++.+.......++.+.... ...-||+|||+|.+.
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------------------ 133 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------------------ 133 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------------------
Confidence 23444543333445566655433 235699999999762
Q ss_pred hccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 333 RKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
...++.||..|+... ...++|++|+..+.+.+.+.. |. ..++|..++..+....+...+
T Consensus 134 --------------~~a~naLLk~LEepp----~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 134 --------------TAAFNALLKTLEEPP----PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred --------------HHHHHHHHHHHhcCC----CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHH
Confidence 234677888888742 346777788888888888877 65 468899999988887777665
Q ss_pred CC
Q 009791 413 GI 414 (525)
Q Consensus 413 ~~ 414 (525)
..
T Consensus 193 ~~ 194 (585)
T PRK14950 193 AA 194 (585)
T ss_pred HH
Confidence 43
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.43 E-value=2.5e-12 Score=145.27 Aligned_cols=155 Identities=16% Similarity=0.273 Sum_probs=111.7
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCC----CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHH
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA----WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDL 286 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L 286 (525)
.|+|.++.++.|.+.+.... .|.. +...+||+||||||||.+|+++|..++.+++.+++++......+
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 36788888888887775432 1221 23469999999999999999999999999999999876432222
Q ss_pred HHH---------------HHH---hCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHH
Q 009791 287 RTL---------------LLS---TGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHML 348 (525)
Q Consensus 287 ~~l---------------~~~---~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (525)
.++ +.. ....|||+|||||.+- ..
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~--------------------------------------~~ 572 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH--------------------------------------PD 572 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh--------------------------------------HH
Confidence 222 111 2346999999999762 23
Q ss_pred HHHHHhhhhcCCC-C-CCC-----CceEEEEecCCC-------------------------CCCCccccCCCceeeEEEc
Q 009791 349 TLSGLLNFIDGLW-S-SCG-----DERIIVFTTNHK-------------------------ERLDPALLRPGRMDMHIHM 396 (525)
Q Consensus 349 ~ls~LLn~idgl~-s-~~~-----~~~ivI~TTN~~-------------------------~~LDpaLlRpGRfd~~I~~ 396 (525)
..+.||..||.-. . ..| .+.+||+|||.- ..+.|+|+. |+|..|.|
T Consensus 573 v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f 650 (758)
T PRK11034 573 VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWF 650 (758)
T ss_pred HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEc
Confidence 6677888887321 1 111 246899999922 235688887 99999999
Q ss_pred CCCCHHHHHHHHHHHhC
Q 009791 397 SYCGPYGFRLLAANYLG 413 (525)
Q Consensus 397 ~~p~~~~r~~L~~~~l~ 413 (525)
+..+.+...+|+..++.
T Consensus 651 ~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 651 DHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987764
No 111
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.42 E-value=6e-12 Score=131.74 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=107.6
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC---------CceEEEecCCc
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK---------FDVFDLQLGNV 280 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~---------~~i~~l~~~~l 280 (525)
+.+.|.++..+.|...+...+.. ..+..+++|||||||||++++++++++. +.++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 57889888888888877654431 2245799999999999999999998763 56778887654
Q ss_pred CChh-------------------------H-HHHHHH---HhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhh
Q 009791 281 TRDS-------------------------D-LRTLLL---STGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331 (525)
Q Consensus 281 ~~~~-------------------------~-L~~l~~---~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (525)
.+.. + +..++. ...++.||+|||+|.+.. .
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~---~------------------ 144 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG---D------------------ 144 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---C------------------
Confidence 3211 0 112222 224578999999998852 0
Q ss_pred hhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCC---CCCccccCCCcee-eEEEcCCCCHHHHHHH
Q 009791 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE---RLDPALLRPGRMD-MHIHMSYCGPYGFRLL 407 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~---~LDpaLlRpGRfd-~~I~~~~p~~~~r~~L 407 (525)
....+..|+...+.. ...+..+.+|++||.++ .+++.+.+ ||. ..|+|+.++.++..++
T Consensus 145 --------------~~~~L~~l~~~~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~i 207 (365)
T TIGR02928 145 --------------DDDLLYQLSRARSNG-DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDI 207 (365)
T ss_pred --------------CcHHHHhHhcccccc-CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHH
Confidence 012344455442211 11124578889999885 68888877 664 6799999999999999
Q ss_pred HHHHhC
Q 009791 408 AANYLG 413 (525)
Q Consensus 408 ~~~~l~ 413 (525)
++..+.
T Consensus 208 l~~r~~ 213 (365)
T TIGR02928 208 LENRAE 213 (365)
T ss_pred HHHHHH
Confidence 998775
No 112
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.42 E-value=1.2e-12 Score=129.47 Aligned_cols=152 Identities=22% Similarity=0.291 Sum_probs=103.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-c-----eEEEe
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF-D-----VFDLQ 276 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~-~-----i~~l~ 276 (525)
.+.|.+|++++|++.+.+.+...+.. .--..|||||||||||||.|.|+|.++.. + +..++
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 47899999999999998888877652 11236999999999999999999999975 2 22223
Q ss_pred cCCcCCh-------hHHHHHHHHh----CCC----eEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCC
Q 009791 277 LGNVTRD-------SDLRTLLLST----GNR----SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAG 341 (525)
Q Consensus 277 ~~~l~~~-------~~L~~l~~~~----~~~----sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (525)
.+.-..- ....++.... ..| -|++|||+|.+.
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------------------------- 142 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------------------------- 142 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh---------------------------------
Confidence 3322111 1111111111 122 599999999773
Q ss_pred CCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 342 GKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 342 ~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
..+.+.|...||... ....+|+.||+++.|++.+.. |.. ++.|+....+.....++...
T Consensus 143 -----sdaq~aLrr~mE~~s----~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 143 -----SDAQAALRRTMEDFS----RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIA 201 (346)
T ss_pred -----HHHHHHHHHHHhccc----cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHH
Confidence 346788999999853 347888999999999999988 775 46666555544334444333
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.9e-12 Score=140.40 Aligned_cols=155 Identities=17% Similarity=0.317 Sum_probs=118.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC--------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-------------- 269 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-------------- 269 (525)
+.|.+|++|+|.+.+++.|...+. ....+..||||||+|+|||++++++|+.+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~------------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIA------------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 678999999999999888877664 123567899999999999999999999875
Q ss_pred -----------CceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhh
Q 009791 270 -----------FDVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAV 332 (525)
Q Consensus 270 -----------~~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (525)
.+++.++..+...-..++.++..+. ..-|++|||+|.+.
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------------------ 134 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------------------ 134 (614)
T ss_pred hHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------------------
Confidence 4566666654444567777775553 24599999999772
Q ss_pred hccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 333 RKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
....+.||..|+.. ++..++|++|+.+..|-++|+. |. ..++|..++.++....+...+
T Consensus 135 --------------~~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia 193 (614)
T PRK14971 135 --------------QAAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVA 193 (614)
T ss_pred --------------HHHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHH
Confidence 23467788888875 2346777888888899999988 65 459999999998887777665
Q ss_pred CCc
Q 009791 413 GIT 415 (525)
Q Consensus 413 ~~~ 415 (525)
...
T Consensus 194 ~~e 196 (614)
T PRK14971 194 SKE 196 (614)
T ss_pred HHc
Confidence 433
No 114
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.41 E-value=2.3e-12 Score=137.13 Aligned_cols=192 Identities=15% Similarity=0.183 Sum_probs=117.4
Q ss_pred ccCCCCccc-cccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEe
Q 009791 203 LEHPATFDT-LAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQ 276 (525)
Q Consensus 203 ~~~~~~f~~-l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~ 276 (525)
+.+..+||+ ++|.... .....+..+...+ |. ...+++||||||||||+|++|+|+++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~n~--~a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNR--LAHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCcHH--HHHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 345568999 4454332 1233333333221 21 23578999999999999999999988 56788887
Q ss_pred cCCcCCh-------hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHH
Q 009791 277 LGNVTRD-------SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLT 349 (525)
Q Consensus 277 ~~~l~~~-------~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (525)
+.++... ..+...........+|+|||||.+.+ + ..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~---~---------------------------------~~~ 217 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG---K---------------------------------ERT 217 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC---C---------------------------------HHH
Confidence 6654211 11112222334567999999998742 0 012
Q ss_pred HHHHhhhhcCCCCCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHH
Q 009791 350 LSGLLNFIDGLWSSCGDERIIVFTTNHKER---LDPALLRPGRMD--MHIHMSYCGPYGFRLLAANYLGITDCEHKLVAE 424 (525)
Q Consensus 350 ls~LLn~idgl~s~~~~~~ivI~TTN~~~~---LDpaLlRpGRfd--~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~ 424 (525)
...|++.++.+... +..+||.+++.|+. +++.|.. ||. ..++++.|+.++|..|++..+...+ .....+.
T Consensus 218 ~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~-~~l~~e~ 292 (405)
T TIGR00362 218 QEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEG-LELPDEV 292 (405)
T ss_pred HHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHH
Confidence 23344545444332 12344444445543 6688887 886 5799999999999999999886552 2223445
Q ss_pred HHHHHhhcCCCHHHHHHHHH
Q 009791 425 IETLLKTINITPAQVAEQFM 444 (525)
Q Consensus 425 i~~l~~~~~~tpadi~~~l~ 444 (525)
++.+++...-+..++.+.+.
T Consensus 293 l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 293 LEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred HHHHHHhcCCCHHHHHHHHH
Confidence 56666666777777766543
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.41 E-value=1.7e-12 Score=140.02 Aligned_cols=193 Identities=17% Similarity=0.230 Sum_probs=116.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEec
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQL 277 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~ 277 (525)
+.+..+|++.+..+.-+. ....+..+...+ |.. .++++||||||||||+|++|+|+++ +..++.+++
T Consensus 115 l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCCCcccccccCCCcHH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 455568999553222221 233333332221 222 2579999999999999999999998 566888877
Q ss_pred CCcCCh-------hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHH
Q 009791 278 GNVTRD-------SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTL 350 (525)
Q Consensus 278 ~~l~~~-------~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (525)
.++... ...........+..+|+|||||.+.+ . ..+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~---------------------------------~---~~~~ 230 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG---------------------------------K---ERTQ 230 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC---------------------------------C---HHHH
Confidence 654211 11222233344678999999998742 0 1122
Q ss_pred HHHhhhhcCCCCCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHH
Q 009791 351 SGLLNFIDGLWSSCGDERIIVFTTNHKER---LDPALLRPGRMD--MHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEI 425 (525)
Q Consensus 351 s~LLn~idgl~s~~~~~~ivI~TTN~~~~---LDpaLlRpGRfd--~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i 425 (525)
..|+..++.+... + ..+||.++..|.. +++.|.. ||. ..+++..|+.++|..|++..+...+ ..-..+.+
T Consensus 231 ~~l~~~~n~l~~~-~-~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~-~~l~~e~l 305 (450)
T PRK00149 231 EEFFHTFNALHEA-G-KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEG-IDLPDEVL 305 (450)
T ss_pred HHHHHHHHHHHHC-C-CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHH
Confidence 3455555544332 1 2344444445544 6788888 885 6899999999999999998876432 12223445
Q ss_pred HHHHhhcCCCHHHHHHHHH
Q 009791 426 ETLLKTINITPAQVAEQFM 444 (525)
Q Consensus 426 ~~l~~~~~~tpadi~~~l~ 444 (525)
+-++....-+..++.+.+.
T Consensus 306 ~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 306 EFIAKNITSNVRELEGALN 324 (450)
T ss_pred HHHHcCcCCCHHHHHHHHH
Confidence 5555555666666555443
No 116
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.40 E-value=3.8e-12 Score=124.64 Aligned_cols=153 Identities=15% Similarity=0.203 Sum_probs=96.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCC
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGN 279 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~ 279 (525)
...|.+||++.+..+ +.+...+..+.. +....+.++|+||||||||+|++++++++ +..++.+++..
T Consensus 11 ~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 11 PPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 356678999773322 223344433322 23445789999999999999999999986 66788888766
Q ss_pred cCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC
Q 009791 280 VTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG 359 (525)
Q Consensus 280 l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg 359 (525)
... .+.......+|+|||+|.+-. ... ..|+..++.
T Consensus 81 ~~~------~~~~~~~~~~liiDdi~~l~~-----------------------------------~~~---~~L~~~~~~ 116 (227)
T PRK08903 81 PLL------AFDFDPEAELYAVDDVERLDD-----------------------------------AQQ---IALFNLFNR 116 (227)
T ss_pred hHH------HHhhcccCCEEEEeChhhcCc-----------------------------------hHH---HHHHHHHHH
Confidence 421 123344577999999997621 112 223344433
Q ss_pred CCCCCCCceEEEEecCCCC---CCCccccCCCce--eeEEEcCCCCHHHHHHHHHHHhC
Q 009791 360 LWSSCGDERIIVFTTNHKE---RLDPALLRPGRM--DMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 360 l~s~~~~~~ivI~TTN~~~---~LDpaLlRpGRf--d~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
.... ...++|+|++.+. .+.+.|.. || ...|+++.|+.+....++..+..
T Consensus 117 ~~~~--~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 117 VRAH--GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred HHHc--CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 3222 2234566665432 35566776 66 57899999999888888776553
No 117
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.40 E-value=1.2e-11 Score=126.75 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=107.5
Q ss_pred cceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC-----Cc
Q 009791 197 RWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-----FD 271 (525)
Q Consensus 197 ~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-----~~ 271 (525)
.|.. .+.|.+|++++|.++.++.+...+. . +. ...+|||||||||||++++++++++. .+
T Consensus 6 ~w~~--kyrP~~~~~~~g~~~~~~~l~~~i~----~-------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 6 IWVE--KYRPRTLDEIVGQEEIVERLKSYVK----E-------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred ccch--hhCCCcHHHhcCcHHHHHHHHHHHh----C-------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 4643 4788999999999888877766543 1 11 12589999999999999999999973 33
Q ss_pred eEEEecCCcCChhHHHHHHHH----h----CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCC
Q 009791 272 VFDLQLGNVTRDSDLRTLLLS----T----GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGK 343 (525)
Q Consensus 272 i~~l~~~~l~~~~~L~~l~~~----~----~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
++.++.+.......++..+.. . ..+.+|+|||+|.+..
T Consensus 71 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------------------------- 116 (319)
T PRK00440 71 FLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------------------------- 116 (319)
T ss_pred eEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------------------------------
Confidence 455544433222222222221 1 1356999999997631
Q ss_pred chhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 344 GQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 344 ~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
.....|+..++.... ...+|+++|.+..+.+++.+ |+. .++++.++.++...++..++...
T Consensus 117 ----~~~~~L~~~le~~~~----~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~ 177 (319)
T PRK00440 117 ----DAQQALRRTMEMYSQ----NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENE 177 (319)
T ss_pred ----HHHHHHHHHHhcCCC----CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHc
Confidence 123456666665422 24677788888888888887 664 58999999999888888877544
No 118
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.40 E-value=5.4e-13 Score=153.37 Aligned_cols=152 Identities=20% Similarity=0.266 Sum_probs=109.0
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceEEEe
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVFDLQ 276 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~~l~ 276 (525)
..++.++|.++..+.+++.+. ...+++++|+||||||||++|+++|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 357888998888877777653 2346689999999999999999999987 47899999
Q ss_pred cCCcC--------ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchh
Q 009791 277 LGNVT--------RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQH 346 (525)
Q Consensus 277 ~~~l~--------~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
++.+. .+..++.++..+. .++||||||||.+++.... . +
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~------------------------g----- 291 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA--E------------------------G----- 291 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC--C------------------------C-----
Confidence 87653 1347788887653 5899999999999752110 0 0
Q ss_pred HHHHHHHh-hhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 347 MLTLSGLL-NFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 347 ~~~ls~LL-n~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
...++.+| ..+. .+++.+|++||..+ ..||+|.| ||.. |.++.|+.++...|++..
T Consensus 292 ~~~~a~lLkp~l~------rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 292 AIDAANILKPALA------RGELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGL 353 (821)
T ss_pred cccHHHHhHHHHh------CCCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHH
Confidence 01122222 2222 24577777777653 47999999 9964 899999999988887754
No 119
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.38 E-value=6.6e-12 Score=141.24 Aligned_cols=152 Identities=22% Similarity=0.294 Sum_probs=103.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD 283 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~ 283 (525)
..|.+|++++|.+..... ...+...+.. + ....+|||||||||||++++++|+.++.+++.+++... ..
T Consensus 22 ~RP~tldd~vGQe~ii~~-~~~L~~~i~~-------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i 90 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGE-GRLLRRAIKA-------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GV 90 (725)
T ss_pred cCCCcHHHhcCcHHHhhh-hHHHHHHHhc-------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hh
Confidence 458999999998877643 1122222221 1 12368999999999999999999999999888877532 22
Q ss_pred hHHHHHHHHh-------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 284 SDLRTLLLST-------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 284 ~~L~~l~~~~-------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
.+++..+... ....||||||||.+.. .....|+..
T Consensus 91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------------------------------~qQdaLL~~ 132 (725)
T PRK13341 91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------------------------------AQQDALLPW 132 (725)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------------------------------HHHHHHHHH
Confidence 3344433322 3567999999998731 123345655
Q ss_pred hcCCCCCCCCceEEEEec--CCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 357 IDGLWSSCGDERIIVFTT--NHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TT--N~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
++. ..+++|++| |....++++|++ |. ..+.|+.++.+++..+++.++.
T Consensus 133 lE~------g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 133 VEN------GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hcC------ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 553 235555544 333678999998 54 4589999999999999998875
No 120
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.37 E-value=1.5e-11 Score=129.88 Aligned_cols=177 Identities=21% Similarity=0.238 Sum_probs=109.4
Q ss_pred ccc-cccChHHHHHHHHHHHHHHHhHHHHHH----hCCC-CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC
Q 009791 209 FDT-LAMEPDLKATIMEDLDRFVRRKEFYKR----VGRA-WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR 282 (525)
Q Consensus 209 f~~-l~g~~~~K~~i~~~l~~fl~~~~~y~~----~g~~-~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~ 282 (525)
|+. |+|.++.|+.+...+....++-..... -+++ .+..+||+||||||||++|+++|..++.++..++++.+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~ 154 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE 154 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence 444 689998888887655322221100000 0111 1357999999999999999999999999999988876531
Q ss_pred --------hhHHHHHHHH------hCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHH
Q 009791 283 --------DSDLRTLLLS------TGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHML 348 (525)
Q Consensus 283 --------~~~L~~l~~~------~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (525)
...+..++.. ...++||||||||.+.. .+...... ..-....
T Consensus 155 ~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~--~~~~~s~~----------------------~dvsg~~ 210 (413)
T TIGR00382 155 AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR--KSENPSIT----------------------RDVSGEG 210 (413)
T ss_pred cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch--hhcccccc----------------------ccccchh
Confidence 1234444432 23678999999998853 11111100 0001124
Q ss_pred HHHHHhhhhcCCCCC---C------CCceEEEEecCCCC-----------------------------------------
Q 009791 349 TLSGLLNFIDGLWSS---C------GDERIIVFTTNHKE----------------------------------------- 378 (525)
Q Consensus 349 ~ls~LLn~idgl~s~---~------~~~~ivI~TTN~~~----------------------------------------- 378 (525)
+.+.||..|||.... . -.+.++|+|+|-.-
T Consensus 211 vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~ 290 (413)
T TIGR00382 211 VQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQ 290 (413)
T ss_pred HHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHH
Confidence 667788888876421 1 12458888988610
Q ss_pred ---------CCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 379 ---------RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 379 ---------~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
.+.|+|+ ||+|..+.|...+.+...+|+..-
T Consensus 291 ~~~~dl~~~g~~PEfl--gRld~Iv~f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 291 VEPEDLVKFGLIPEFI--GRLPVIATLEKLDEEALIAILTKP 330 (413)
T ss_pred HHHHHHHHHhhHHHHh--CCCCeEeecCCCCHHHHHHHHHHH
Confidence 0235554 488888888888888888777643
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.36 E-value=1.8e-11 Score=139.38 Aligned_cols=154 Identities=18% Similarity=0.294 Sum_probs=108.9
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCC---cc-eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChh--
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAW---KR-GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDS-- 284 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~---~r-g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~-- 284 (525)
.|+|.++.++.|.+.+.. .+.|... |. .+||+||||||||+||+++|..++.+++.+++++.....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 466777766666655432 1334321 33 489999999999999999999999999999988763211
Q ss_pred -----------------HHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhH
Q 009791 285 -----------------DLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHM 347 (525)
Q Consensus 285 -----------------~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (525)
.+.+.+. ....+||+|||||.+- .
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~--------------------------------------~ 567 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAH--------------------------------------P 567 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcC--------------------------------------H
Confidence 1222222 2456899999999762 2
Q ss_pred HHHHHHhhhhcCCCCC--CC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEE
Q 009791 348 LTLSGLLNFIDGLWSS--CG-----DERIIVFTTNHKE-------------------------RLDPALLRPGRMDMHIH 395 (525)
Q Consensus 348 ~~ls~LLn~idgl~s~--~~-----~~~ivI~TTN~~~-------------------------~LDpaLlRpGRfd~~I~ 395 (525)
...+.||..+|...-. .| .+.+||+|||... .+.|.|+. |||..|.
T Consensus 568 ~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~ 645 (731)
T TIGR02639 568 DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIH 645 (731)
T ss_pred HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEE
Confidence 3566788888753211 11 2468999998631 25677776 9999999
Q ss_pred cCCCCHHHHHHHHHHHhC
Q 009791 396 MSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 396 ~~~p~~~~r~~L~~~~l~ 413 (525)
|...+.++..+|+...+.
T Consensus 646 F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 646 FNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 999999999999998874
No 122
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.35 E-value=9e-12 Score=122.89 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=94.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC---CceEEEecCCc
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK---FDVFDLQLGNV 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~~~~l 280 (525)
.+..+||+.+-..+ +.....+..+... +..+.++||||||||||+|++|+|+++. ..+..+++...
T Consensus 16 ~~~~~fd~f~~~~n--~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 16 PDDETFASFYPGDN--DSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CCcCCccccccCcc--HHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 45568998773221 2234444433221 1235799999999999999999999864 44555555442
Q ss_pred CChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC
Q 009791 281 TRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL 360 (525)
Q Consensus 281 ~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl 360 (525)
.. ...+++....+-.+|+||||+.+.. .......+-.++|. .
T Consensus 85 ~~--~~~~~~~~~~~~dlliiDdi~~~~~---------------------------------~~~~~~~lf~l~n~---~ 126 (235)
T PRK08084 85 AW--FVPEVLEGMEQLSLVCIDNIECIAG---------------------------------DELWEMAIFDLYNR---I 126 (235)
T ss_pred hh--hhHHHHHHhhhCCEEEEeChhhhcC---------------------------------CHHHHHHHHHHHHH---H
Confidence 21 1222333333446899999997732 01112223333333 2
Q ss_pred CCCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEcCCCCHHHHHHHHHHHh
Q 009791 361 WSSCGDERIIVFTTNHKER---LDPALLRPGRMD--MHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 361 ~s~~~~~~ivI~TTN~~~~---LDpaLlRpGRfd--~~I~~~~p~~~~r~~L~~~~l 412 (525)
... +...+|+.+++.|.. +.|.|.. |+. ..+++..|+.+++.++++...
T Consensus 127 ~e~-g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 127 LES-GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred HHc-CCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHH
Confidence 221 222455555556655 5799998 775 789999999999999987644
No 123
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=5.1e-11 Score=124.61 Aligned_cols=177 Identities=16% Similarity=0.214 Sum_probs=122.7
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
.+|++|++|+|.++.++.|.+.+.. ...+.++||+||+|+||+++|.++|+.+-+
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 6899999999999998888765541 245678999999999999999999998832
Q ss_pred ---------------------ceEEEecC--C-------cCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCC
Q 009791 271 ---------------------DVFDLQLG--N-------VTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRR 314 (525)
Q Consensus 271 ---------------------~i~~l~~~--~-------l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~ 314 (525)
+++.+... + ...-..+|++..... .+-|++|||+|.+-
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------ 154 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------ 154 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------
Confidence 22223221 1 012245565554432 46799999999662
Q ss_pred CCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEE
Q 009791 315 NGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHI 394 (525)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I 394 (525)
....+.||..+... +...++|++|+.++.+.|.++. |+ ..|
T Consensus 155 --------------------------------~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i 195 (365)
T PRK07471 155 --------------------------------ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKL 195 (365)
T ss_pred --------------------------------HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEE
Confidence 34667888888864 2346888899999999999877 76 579
Q ss_pred EcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcCCCHHHHHHH
Q 009791 395 HMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTINITPAQVAEQ 442 (525)
Q Consensus 395 ~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~~tpadi~~~ 442 (525)
.|+.|+.++..+++....... ....+..++..++-+|....++
T Consensus 196 ~l~~l~~~~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 196 RLRPLAPEDVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred ECCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999888887754322 1122234455556666554443
No 124
>PRK08727 hypothetical protein; Validated
Probab=99.34 E-value=3e-11 Score=119.03 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=101.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCC
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGN 279 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~ 279 (525)
.....+||+.++.+.- ....+..... | .+...++||||+|||||+|++|+|+++ +..+..+++.+
T Consensus 12 ~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 12 YPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 3455689998765542 1222211111 2 133569999999999999999998775 56666676655
Q ss_pred cCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC
Q 009791 280 VTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG 359 (525)
Q Consensus 280 l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg 359 (525)
.. ..+.+.+....+..+|+|||||.+.. .......+-.++|.+-.
T Consensus 80 ~~--~~~~~~~~~l~~~dlLiIDDi~~l~~---------------------------------~~~~~~~lf~l~n~~~~ 124 (233)
T PRK08727 80 AA--GRLRDALEALEGRSLVALDGLESIAG---------------------------------QREDEVALFDFHNRARA 124 (233)
T ss_pred hh--hhHHHHHHHHhcCCEEEEeCcccccC---------------------------------ChHHHHHHHHHHHHHHH
Confidence 32 34556666677788999999997742 01112233344444322
Q ss_pred CCCCCCCceEEEEecC-CCCCC---CccccCCCce--eeEEEcCCCCHHHHHHHHHHHhC
Q 009791 360 LWSSCGDERIIVFTTN-HKERL---DPALLRPGRM--DMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 360 l~s~~~~~~ivI~TTN-~~~~L---DpaLlRpGRf--d~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
. +.-||+|+| .|..+ +|+|.+ || ..+++++.|+.+++.++++....
T Consensus 125 ---~---~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 125 ---A---GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred ---c---CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 1 133555555 66655 799998 86 57899999999999999997553
No 125
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.34 E-value=1.5e-11 Score=109.52 Aligned_cols=116 Identities=28% Similarity=0.386 Sum_probs=81.0
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHHH-----------HHHHHhCCCeEEEEecccccc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDLR-----------TLLLSTGNRSILVIEDIDCSV 308 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L~-----------~l~~~~~~~sIL~iDdID~~~ 308 (525)
..+.++++||||||||++++++++.+ +.+++.+++.......... ........+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999999 8999999988765432222 112223468999999999752
Q ss_pred CCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCC--CCCceEEEEecCCCC--CCCccc
Q 009791 309 DLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSS--CGDERIIVFTTNHKE--RLDPAL 384 (525)
Q Consensus 309 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~--~~~~~ivI~TTN~~~--~LDpaL 384 (525)
. .....++..+...... ...+..+|++||... .+++.+
T Consensus 98 ~--------------------------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 139 (151)
T cd00009 98 R--------------------------------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRAL 139 (151)
T ss_pred H--------------------------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhH
Confidence 1 1223344444433211 124478888998887 788888
Q ss_pred cCCCceeeEEEcCC
Q 009791 385 LRPGRMDMHIHMSY 398 (525)
Q Consensus 385 lRpGRfd~~I~~~~ 398 (525)
.. ||+.+|++++
T Consensus 140 ~~--r~~~~i~~~~ 151 (151)
T cd00009 140 YD--RLDIRIVIPL 151 (151)
T ss_pred Hh--hhccEeecCC
Confidence 87 9998888763
No 126
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.31 E-value=5.4e-12 Score=128.62 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=91.7
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHH------------------HH-HHhCCCeEEEEec
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRT------------------LL-LSTGNRSILVIED 303 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~------------------l~-~~~~~~sIL~iDd 303 (525)
..+.+||.||||||||++++++|..++.+++.++++......++.. .+ .....+++|++||
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEech
Confidence 3568999999999999999999999999999998776532211100 11 1224678999999
Q ss_pred cccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh-----hcCC--CCCCCCceEEEEecCC
Q 009791 304 IDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF-----IDGL--WSSCGDERIIVFTTNH 376 (525)
Q Consensus 304 ID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~-----idgl--~s~~~~~~ivI~TTN~ 376 (525)
||..-+ .....++.+|.. +++. .-.+.....+|+|+|.
T Consensus 143 in~a~p-----------------------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 143 YDAGRP-----------------------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred hhccCH-----------------------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 997621 111223333331 1110 0112235788999998
Q ss_pred CC------------CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 377 KE------------RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 377 ~~------------~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
.+ .|++|++. ||-..+.++||+.+.-.+|+....
T Consensus 188 ~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 188 IGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 65 46899999 999899999999999888887654
No 127
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=6.9e-11 Score=125.11 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=106.0
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEecCCcCC
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQLGNVTR 282 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~~~l~~ 282 (525)
..+.+.+-++..++|...+...+. | ..+..+++|||||||||++++.+++++ ++.++.++|....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 345677877777777766654332 1 223568999999999999999999987 57788888764322
Q ss_pred h-----------------------hHHHH----HHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhcc
Q 009791 283 D-----------------------SDLRT----LLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKN 335 (525)
Q Consensus 283 ~-----------------------~~L~~----l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 335 (525)
. .++.. .+.....+.||+|||+|.+.. +
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~---~---------------------- 153 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE---K---------------------- 153 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc---c----------------------
Confidence 1 11111 112223568999999998751 0
Q ss_pred ccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCC---CCCCccccCCCce-eeEEEcCCCCHHHHHHHHHHH
Q 009791 336 KTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHK---ERLDPALLRPGRM-DMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 336 ~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~---~~LDpaLlRpGRf-d~~I~~~~p~~~~r~~L~~~~ 411 (525)
.....+..|+..++... +..+.+|+++|.. +.++|.+.. |+ ...|+|+.++.++..+++...
T Consensus 154 ---------~~~~~l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r 219 (394)
T PRK00411 154 ---------EGNDVLYSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDR 219 (394)
T ss_pred ---------CCchHHHHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHH
Confidence 01224666666665442 2257788888876 457777765 44 357899999999999999877
Q ss_pred hC
Q 009791 412 LG 413 (525)
Q Consensus 412 l~ 413 (525)
+.
T Consensus 220 ~~ 221 (394)
T PRK00411 220 VE 221 (394)
T ss_pred HH
Confidence 64
No 128
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.3e-10 Score=120.83 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=121.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD------------ 271 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~------------ 271 (525)
.||..|+.|+|.++.++.+...+. ....+..+||+||+|+|||+++.++|+.+.+.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~------------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR------------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH------------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 699999999999998887776543 12345689999999999999999999998551
Q ss_pred ------------------eEEEecC---------CcCChhHHHHHHHHh---C---CCeEEEEeccccccCCCCCCCCCC
Q 009791 272 ------------------VFDLQLG---------NVTRDSDLRTLLLST---G---NRSILVIEDIDCSVDLPDRRNGNE 318 (525)
Q Consensus 272 ------------------i~~l~~~---------~l~~~~~L~~l~~~~---~---~~sIL~iDdID~~~~~~~r~~~~~ 318 (525)
++.+... ...+...++.+.... + ..-|++|||+|.+-
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~---------- 154 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN---------- 154 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------
Confidence 1111100 001123444443222 1 34599999999762
Q ss_pred CCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCC
Q 009791 319 NNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSY 398 (525)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~ 398 (525)
....+.||..++... ...++|+.|+.++.|.|.++. |+ .+++|+.
T Consensus 155 ----------------------------~~aanaLLk~LEEpp----~~~~fiLit~~~~~llptIrS--Rc-~~i~l~p 199 (351)
T PRK09112 155 ----------------------------RNAANAILKTLEEPP----ARALFILISHSSGRLLPTIRS--RC-QPISLKP 199 (351)
T ss_pred ----------------------------HHHHHHHHHHHhcCC----CCceEEEEECChhhccHHHHh--hc-cEEEecC
Confidence 235677888888742 345667777889999999987 77 6899999
Q ss_pred CCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcCCCHHHHHHHH
Q 009791 399 CGPYGFRLLAANYLGITDCEHKLVAEIETLLKTINITPAQVAEQF 443 (525)
Q Consensus 399 p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~~tpadi~~~l 443 (525)
++.++...++..... . .....+.+..++..++-+|....+++
T Consensus 200 l~~~~~~~~L~~~~~-~--~~~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 200 LDDDELKKALSHLGS-S--QGSDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCHHHHHHHHHHhhc-c--cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999888887422 1 11223445556666677776555443
No 129
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.30 E-value=2.4e-12 Score=116.13 Aligned_cols=105 Identities=30% Similarity=0.427 Sum_probs=73.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHH---------------hCCCeEEEEeccccccCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLS---------------TGNRSILVIEDIDCSVDL 310 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~---------------~~~~sIL~iDdID~~~~~ 310 (525)
++||+||||||||+|++.+|..++.+++.+.++.-.+..+|.....- ..+++|++||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 48999999999999999999999999999999887665544322211 1257899999999651
Q ss_pred CCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCC----------CCCC-----ceEEEEecC
Q 009791 311 PDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWS----------SCGD-----ERIIVFTTN 375 (525)
Q Consensus 311 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s----------~~~~-----~~ivI~TTN 375 (525)
..+++.|++.+|.-.- .... +..||+|+|
T Consensus 79 ------------------------------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N 122 (139)
T PF07728_consen 79 ------------------------------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMN 122 (139)
T ss_dssp ------------------------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEES
T ss_pred ------------------------------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEc
Confidence 2345555555543210 0111 389999999
Q ss_pred CCC----CCCccccCCCce
Q 009791 376 HKE----RLDPALLRPGRM 390 (525)
Q Consensus 376 ~~~----~LDpaLlRpGRf 390 (525)
..+ .+++||++ ||
T Consensus 123 ~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 123 PRDKGRKELSPALLD--RF 139 (139)
T ss_dssp SST--TTTTCHHHHT--T-
T ss_pred CCCCCcCcCCHHHHh--hC
Confidence 988 99999999 87
No 130
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.29 E-value=1.1e-10 Score=120.42 Aligned_cols=156 Identities=21% Similarity=0.230 Sum_probs=103.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-------CCce--EEE
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-------KFDV--FDL 275 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-------~~~i--~~l 275 (525)
.|-+|+.|.|.++.|+.+.-.+.. +-..++||+||||||||++++++|+.+ +.++ ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 466899999999988876542210 112479999999999999999999998 3311 111
Q ss_pred ----ecC-----C-------------------cCChhHHHHHHHH-----------hCCCeEEEEeccccccCCCCCCCC
Q 009791 276 ----QLG-----N-------------------VTRDSDLRTLLLS-----------TGNRSILVIEDIDCSVDLPDRRNG 316 (525)
Q Consensus 276 ----~~~-----~-------------------l~~~~~L~~l~~~-----------~~~~sIL~iDdID~~~~~~~r~~~ 316 (525)
++. . +...-.+...+.. .....+|++|||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------
Confidence 010 0 0111112222211 1234699999999762
Q ss_pred CCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC---------CCCCCCceEEEEecCCCC-CCCccccC
Q 009791 317 NENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL---------WSSCGDERIIVFTTNHKE-RLDPALLR 386 (525)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl---------~s~~~~~~ivI~TTN~~~-~LDpaLlR 386 (525)
..+.+.|++.|+.- ....+..+++++|+|..+ .++++|+.
T Consensus 142 ------------------------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld 191 (334)
T PRK13407 142 ------------------------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD 191 (334)
T ss_pred ------------------------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh
Confidence 34666777777532 112234578888888654 68999999
Q ss_pred CCceeeEEEcCCCCH-HHHHHHHHHHhC
Q 009791 387 PGRMDMHIHMSYCGP-YGFRLLAANYLG 413 (525)
Q Consensus 387 pGRfd~~I~~~~p~~-~~r~~L~~~~l~ 413 (525)
||...|.+++|.. +++.+++.+...
T Consensus 192 --RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 192 --RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred --hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 9999999999988 888999987543
No 131
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=3.2e-10 Score=116.57 Aligned_cols=148 Identities=14% Similarity=0.204 Sum_probs=109.4
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC--------ceEEEecC-
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF--------DVFDLQLG- 278 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~--------~i~~l~~~- 278 (525)
+|++|+|.+.+++.+...+. ....+..||||||+|+|||++|+++|+.+.+ +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 68999999999888877653 2345678999999999999999999998732 44444331
Q ss_pred -CcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHH
Q 009791 279 -NVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLS 351 (525)
Q Consensus 279 -~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 351 (525)
...+-..++.+..... ..-|++|||+|.+- ....+
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------------------------------~~a~n 111 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------------------------------EQAQN 111 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------------------------------HHHHH
Confidence 1123456777766442 35699999999762 23567
Q ss_pred HHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 352 GLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 352 ~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
.||..++.. +...++|++|++++.|.|.++. |. .+++|..|+.++....+...+
T Consensus 112 aLLK~LEep----p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 112 AFLKTIEEP----PKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHHHHhcCC----CCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 889888864 3457788888889999999988 65 579999999998777666543
No 132
>PRK05642 DNA replication initiation factor; Validated
Probab=99.28 E-value=6.4e-11 Score=116.75 Aligned_cols=159 Identities=18% Similarity=0.220 Sum_probs=98.4
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCC-cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAW-KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~-~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
..+..+||+.+... .....+.+..+.... ..| .+.++||||+|||||+|++|+|+++ +..++.++..
T Consensus 12 ~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~-------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 12 LRDDATFANYYPGA--NAAALGYVERLCEAD-------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCcccccccCcCC--hHHHHHHHHHHhhcc-------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 34556899987322 233444444332211 123 3678999999999999999999875 5677788776
Q ss_pred CcCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhc
Q 009791 279 NVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFID 358 (525)
Q Consensus 279 ~l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~id 358 (525)
++... ...++....+--+|+||||+.+.+ . ..+...|++.++
T Consensus 83 ~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~---------------------------------~---~~~~~~Lf~l~n 124 (234)
T PRK05642 83 ELLDR--GPELLDNLEQYELVCLDDLDVIAG---------------------------------K---ADWEEALFHLFN 124 (234)
T ss_pred HHHhh--hHHHHHhhhhCCEEEEechhhhcC---------------------------------C---hHHHHHHHHHHH
Confidence 65422 122333333446899999997632 0 112233555555
Q ss_pred CCCCCCCCceEEEEecCCCCC---CCccccCCCce--eeEEEcCCCCHHHHHHHHHHHh
Q 009791 359 GLWSSCGDERIIVFTTNHKER---LDPALLRPGRM--DMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 359 gl~s~~~~~~ivI~TTN~~~~---LDpaLlRpGRf--d~~I~~~~p~~~~r~~L~~~~l 412 (525)
.+... +..+|+.++..|.. +.|.|.. || ...+.+..|+.+.+..+++...
T Consensus 125 ~~~~~--g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 125 RLRDS--GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHHhc--CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 44332 23455555545533 3688988 77 4778899999999999988543
No 133
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=3.4e-11 Score=131.66 Aligned_cols=190 Identities=16% Similarity=0.169 Sum_probs=113.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEec
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQL 277 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~ 277 (525)
+....+||+++..+.-. .....+..... ..+. +.+.++|||++|||||+|++|||+++ ++.++++++
T Consensus 281 L~~~~TFDnFvvG~sN~-~A~aaa~avae------~~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 281 LNPKYTFDTFVIGASNR-FAHAAAVAVAE------APAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCCCHhhhcCCCccH-HHHHHHHHHHh------Cccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 44556899976443322 11222222222 1122 33469999999999999999999987 567888887
Q ss_pred CCcCCh-------hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHH
Q 009791 278 GNVTRD-------SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTL 350 (525)
Q Consensus 278 ~~l~~~-------~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (525)
.++..+ ..+........+..+|+||||+.+.+ . ..+.
T Consensus 353 eef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g---------------------------------k---e~tq 396 (617)
T PRK14086 353 EEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED---------------------------------K---ESTQ 396 (617)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC---------------------------------C---HHHH
Confidence 654211 11112222334678999999998742 0 1122
Q ss_pred HHHhhhhcCCCCCCCCceEEEEecCCC----CCCCccccCCCce--eeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHH-
Q 009791 351 SGLLNFIDGLWSSCGDERIIVFTTNHK----ERLDPALLRPGRM--DMHIHMSYCGPYGFRLLAANYLGITDCEHKLVA- 423 (525)
Q Consensus 351 s~LLn~idgl~s~~~~~~ivI~TTN~~----~~LDpaLlRpGRf--d~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~- 423 (525)
..|++.++.+... + .-||+|+|.+ ..+++.|.. || ...+++..|+.+.|..|++..+...+ ..+.+
T Consensus 397 eeLF~l~N~l~e~-g--k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~--l~l~~e 469 (617)
T PRK14086 397 EEFFHTFNTLHNA-N--KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQ--LNAPPE 469 (617)
T ss_pred HHHHHHHHHHHhc-C--CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcC--CCCCHH
Confidence 3344555544432 1 2355577754 357889998 66 66779999999999999998876542 22223
Q ss_pred HHHHHHhhcCCCHHHHHHHH
Q 009791 424 EIETLLKTINITPAQVAEQF 443 (525)
Q Consensus 424 ~i~~l~~~~~~tpadi~~~l 443 (525)
.++-|+....-+..++...|
T Consensus 470 Vi~yLa~r~~rnvR~LegaL 489 (617)
T PRK14086 470 VLEFIASRISRNIRELEGAL 489 (617)
T ss_pred HHHHHHHhccCCHHHHHHHH
Confidence 33334444444555555444
No 134
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.26 E-value=1.2e-10 Score=129.84 Aligned_cols=173 Identities=19% Similarity=0.330 Sum_probs=108.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceE
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVF 273 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~ 273 (525)
..|.+|++++|.....+.+.+.+. .+.+..++|+||||||||++++++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 358899999998887776654431 1335679999999999999999998766 35688
Q ss_pred EEecCCcCCh-hHH----------------HHHHHH------------hCCCeEEEEeccccccCCCCCCCCCCCCchhh
Q 009791 274 DLQLGNVTRD-SDL----------------RTLLLS------------TGNRSILVIEDIDCSVDLPDRRNGNENNADAQ 324 (525)
Q Consensus 274 ~l~~~~l~~~-~~L----------------~~l~~~------------~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~ 324 (525)
.+++..+..+ ..+ ++.+.. ..+..||||||++.+-.
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------- 279 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------- 279 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH---------------
Confidence 8888765311 111 111111 11357999999997621
Q ss_pred hHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC--------CC----------------CCCCCceEEE-EecCCCCC
Q 009791 325 SKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG--------LW----------------SSCGDERIIV-FTTNHKER 379 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg--------l~----------------s~~~~~~ivI-~TTN~~~~ 379 (525)
.....|+..|+. .+ ...+..+++| .||+.++.
T Consensus 280 -----------------------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~ 336 (615)
T TIGR02903 280 -----------------------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEE 336 (615)
T ss_pred -----------------------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccc
Confidence 011122222211 00 0011224444 47778899
Q ss_pred CCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc
Q 009791 380 LDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI 432 (525)
Q Consensus 380 LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~ 432 (525)
++++|++ ||. .++++..+.++...|++.++... .....+++..++...
T Consensus 337 l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~--~v~ls~eal~~L~~y 384 (615)
T TIGR02903 337 INPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKI--NVHLAAGVEELIARY 384 (615)
T ss_pred cCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHC
Confidence 9999988 886 57888899999999999987643 222334444444433
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=4.3e-11 Score=128.43 Aligned_cols=189 Identities=15% Similarity=0.272 Sum_probs=109.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEecC
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQLG 278 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~~ 278 (525)
.+.-+||+.+-.+.-.. ....+..+...+ | +..+++||||||||||+|++|+|+++ +..++.+++.
T Consensus 99 ~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 99 NPDYTFENFVVGPGNSF-AYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCcccccccCCchHH-HHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 45568999773333221 222333333221 2 23569999999999999999999986 4567777765
Q ss_pred CcCCh-------hHHHHHHHHh-CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHH
Q 009791 279 NVTRD-------SDLRTLLLST-GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTL 350 (525)
Q Consensus 279 ~l~~~-------~~L~~l~~~~-~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (525)
++..+ ..+....... .++.+|+|||++.+.+. ..+.
T Consensus 170 ~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~------------------------------------~~~q 213 (440)
T PRK14088 170 KFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK------------------------------------TGVQ 213 (440)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc------------------------------------HHHH
Confidence 53211 1111222222 25789999999987530 0111
Q ss_pred HHHhhhhcCCCCCCCCceEEEEecCCCCC---CCccccCCCce--eeEEEcCCCCHHHHHHHHHHHhCCcCCCccc-HHH
Q 009791 351 SGLLNFIDGLWSSCGDERIIVFTTNHKER---LDPALLRPGRM--DMHIHMSYCGPYGFRLLAANYLGITDCEHKL-VAE 424 (525)
Q Consensus 351 s~LLn~idgl~s~~~~~~ivI~TTN~~~~---LDpaLlRpGRf--d~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~-~~~ 424 (525)
..|+..++.+... + ..+|+.+.+.|.. +++.|.. || ...+.+..|+.+.|..|++..+...+ ..+ .+.
T Consensus 214 ~elf~~~n~l~~~-~-k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~--~~l~~ev 287 (440)
T PRK14088 214 TELFHTFNELHDS-G-KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEH--GELPEEV 287 (440)
T ss_pred HHHHHHHHHHHHc-C-CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcC--CCCCHHH
Confidence 2344444444332 1 2344444455554 5677877 55 46789999999999999998876442 222 233
Q ss_pred HHHHHhhcCCCHHHHHHHH
Q 009791 425 IETLLKTINITPAQVAEQF 443 (525)
Q Consensus 425 i~~l~~~~~~tpadi~~~l 443 (525)
++-+++...-+..++...+
T Consensus 288 ~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 288 LNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHHhccccCHHHHHHHH
Confidence 4444444444555555444
No 136
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.26 E-value=6.4e-11 Score=127.27 Aligned_cols=155 Identities=17% Similarity=0.313 Sum_probs=119.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD------------ 271 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~------------ 271 (525)
..|.+|+++.|.+.+.+.|...+.. .....+|||.||-||||||+++.+|..+++.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 4688999999999998888876642 1235689999999999999999999998653
Q ss_pred ------------eEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 272 ------------VFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 272 ------------i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
++.+|..+-..-+++|++..+.. +.-|++|||++.+.
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------------------- 132 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------------------- 132 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------------------
Confidence 22233333234567888887764 33599999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....++||.-+..- +..|++|++|..++++++.++. |. .++.|..-+.++....+..++.
T Consensus 133 -------------~~afNALLKTLEEP----P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~ 192 (515)
T COG2812 133 -------------KQAFNALLKTLEEP----PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILD 192 (515)
T ss_pred -------------HHHHHHHhcccccC----ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHH
Confidence 45788899888763 5669999999999999999997 65 4577888888888888888776
Q ss_pred Cc
Q 009791 414 IT 415 (525)
Q Consensus 414 ~~ 415 (525)
..
T Consensus 193 ~E 194 (515)
T COG2812 193 KE 194 (515)
T ss_pred hc
Confidence 54
No 137
>PHA02244 ATPase-like protein
Probab=99.24 E-value=8.9e-11 Score=121.07 Aligned_cols=121 Identities=17% Similarity=0.333 Sum_probs=80.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCC----c----CChhHHH--HHHHHhCCCeEEEEeccccccCCCCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN----V----TRDSDLR--TLLLSTGNRSILVIEDIDCSVDLPDR 313 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~----l----~~~~~L~--~l~~~~~~~sIL~iDdID~~~~~~~r 313 (525)
...+||+||||||||++|++||..++.+++.++... + .....+. .++....+..+|+|||||.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p---- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP---- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH----
Confidence 346999999999999999999999999999886321 0 0011111 2333456789999999997631
Q ss_pred CCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh-----hhhcCCCCCCCCceEEEEecCCC-----------
Q 009791 314 RNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL-----NFIDGLWSSCGDERIIVFTTNHK----------- 377 (525)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL-----n~idgl~s~~~~~~ivI~TTN~~----------- 377 (525)
.....++.++ ..+++... ...++.+|+|+|.+
T Consensus 195 -------------------------------~vq~~L~~lLd~r~l~l~g~~i~-~h~~FRlIATsN~~~~G~~~~y~G~ 242 (383)
T PHA02244 195 -------------------------------EALIIINSAIANKFFDFADERVT-AHEDFRVISAGNTLGKGADHIYVAR 242 (383)
T ss_pred -------------------------------HHHHHHHHHhccCeEEecCcEEe-cCCCEEEEEeeCCCccCcccccCCC
Confidence 1112222222 22222221 12457889999973
Q ss_pred CCCCccccCCCceeeEEEcCCCCHHH
Q 009791 378 ERLDPALLRPGRMDMHIHMSYCGPYG 403 (525)
Q Consensus 378 ~~LDpaLlRpGRfd~~I~~~~p~~~~ 403 (525)
..|++|++. || .+|+|+||+..+
T Consensus 243 k~L~~AllD--RF-v~I~~dyp~~~E 265 (383)
T PHA02244 243 NKIDGATLD--RF-APIEFDYDEKIE 265 (383)
T ss_pred cccCHHHHh--hc-EEeeCCCCcHHH
Confidence 578999999 99 579999998544
No 138
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.24 E-value=8.8e-11 Score=121.58 Aligned_cols=130 Identities=28% Similarity=0.298 Sum_probs=91.9
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHH------HHH------HHHhCC---C---eEEEEeccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDL------RTL------LLSTGN---R---SILVIEDID 305 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L------~~l------~~~~~~---~---sIL~iDdID 305 (525)
.+.+||-||||||||+|++++|..++.+++.+.|+.-...+++ ... +.-.+. . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 4679999999999999999999999999999999865433222 111 111111 1 399999999
Q ss_pred cccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC-------CC-CCCCCceEEEEecC--
Q 009791 306 CSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG-------LW-SSCGDERIIVFTTN-- 375 (525)
Q Consensus 306 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg-------l~-s~~~~~~ivI~TTN-- 375 (525)
..- ..+.+.||..|+. .. -.-....+||+|+|
T Consensus 123 ra~--------------------------------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 123 RAP--------------------------------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred cCC--------------------------------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 652 2456667777664 11 11234578888999
Q ss_pred ---CCCCCCccccCCCceeeEEEcCCC-CHHHHHHHHHHHhC
Q 009791 376 ---HKERLDPALLRPGRMDMHIHMSYC-GPYGFRLLAANYLG 413 (525)
Q Consensus 376 ---~~~~LDpaLlRpGRfd~~I~~~~p-~~~~r~~L~~~~l~ 413 (525)
....|++|+++ ||...++++|| ...+...+......
T Consensus 165 e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 165 EYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred ccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 45678999999 99999999999 55555555554443
No 139
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.24 E-value=2.8e-10 Score=126.64 Aligned_cols=156 Identities=22% Similarity=0.278 Sum_probs=104.2
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceEEEecCC
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVFDLQLGN 279 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~~l~~~~ 279 (525)
+.|.+-++..++|...|...+. |-.+...+++||+||||||++++.+.++| .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 4666777777777766655443 22223345699999999999999998877 26678899865
Q ss_pred cCCh-----------------------hHHHHHHHHhC----CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhh
Q 009791 280 VTRD-----------------------SDLRTLLLSTG----NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAV 332 (525)
Q Consensus 280 l~~~-----------------------~~L~~l~~~~~----~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (525)
+.+. ..+..+|.... ...||+|||||.+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k----------------------- 883 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT----------------------- 883 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc-----------------------
Confidence 4321 23344444331 356999999998853
Q ss_pred hccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCC---CCCCCccccCCCceee-EEEcCCCCHHHHHHHH
Q 009791 333 RKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNH---KERLDPALLRPGRMDM-HIHMSYCGPYGFRLLA 408 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~---~~~LDpaLlRpGRfd~-~I~~~~p~~~~r~~L~ 408 (525)
.....|-.|+++.. . .+..++||+++|. ++.|+|.+.. ||.. .|.|++++.+++.+|+
T Consensus 884 ------------K~QDVLYnLFR~~~---~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dIL 945 (1164)
T PTZ00112 884 ------------KTQKVLFTLFDWPT---K-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKII 945 (1164)
T ss_pred ------------cHHHHHHHHHHHhh---c-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHH
Confidence 01223444444322 1 2345888899986 5678888887 5543 4888999999999999
Q ss_pred HHHhCC
Q 009791 409 ANYLGI 414 (525)
Q Consensus 409 ~~~l~~ 414 (525)
..-+..
T Consensus 946 k~RAe~ 951 (1164)
T PTZ00112 946 KERLEN 951 (1164)
T ss_pred HHHHHh
Confidence 887653
No 140
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.23 E-value=2.1e-10 Score=132.22 Aligned_cols=157 Identities=17% Similarity=0.307 Sum_probs=108.6
Q ss_pred ccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCC---c-ceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC
Q 009791 209 FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAW---K-RGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT 281 (525)
Q Consensus 209 f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~---~-rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~ 281 (525)
++.|+|.+...+.|...+.... .|... | ..+||+||||||||++|++||+.+ +.+++.++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 5568888888777777765432 12221 2 258999999999999999999988 4578889988764
Q ss_pred ChhHHHHHH---------------HH---hCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCC
Q 009791 282 RDSDLRTLL---------------LS---TGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGK 343 (525)
Q Consensus 282 ~~~~L~~l~---------------~~---~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
......+++ .. ....+||+|||||.+-
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~----------------------------------- 683 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH----------------------------------- 683 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC-----------------------------------
Confidence 332222222 11 1234899999999652
Q ss_pred chhHHHHHHHhhhhcCCCCCCC-------CceEEEEecCCC-------------------------CCCCccccCCCcee
Q 009791 344 GQHMLTLSGLLNFIDGLWSSCG-------DERIIVFTTNHK-------------------------ERLDPALLRPGRMD 391 (525)
Q Consensus 344 ~~~~~~ls~LLn~idgl~s~~~-------~~~ivI~TTN~~-------------------------~~LDpaLlRpGRfd 391 (525)
....+.|++.+|.-.-..+ .+.+||+|||.. ..+.|+|+. |+|
T Consensus 684 ---~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld 758 (857)
T PRK10865 684 ---PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RID 758 (857)
T ss_pred ---HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCC
Confidence 2356677777763211111 234789999972 234578887 999
Q ss_pred eEEEcCCCCHHHHHHHHHHHhC
Q 009791 392 MHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 392 ~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
..|.|.+++.+...+|+..++.
T Consensus 759 ~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 759 EVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred eeEecCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988874
No 141
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=6e-11 Score=127.20 Aligned_cols=130 Identities=21% Similarity=0.348 Sum_probs=86.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC-------hhHHHHHHHHhCCCeEEEEeccccccCCCCCC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR-------DSDLRTLLLSTGNRSILVIEDIDCSVDLPDRR 314 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~-------~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~ 314 (525)
++++||||||+|||+|++|+|+++ +..++.++...+.. ............+..+|+||||+.+.+ +
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~---k- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG---K- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC---C-
Confidence 579999999999999999999987 57788777654321 011111111234677999999998632 0
Q ss_pred CCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCC-C---CCCCccccCCCce
Q 009791 315 NGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNH-K---ERLDPALLRPGRM 390 (525)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~-~---~~LDpaLlRpGRf 390 (525)
. .+...|+..++.+... + ..||+|||. | ..+++.|.+ ||
T Consensus 218 -----------------------------~---~~qeelf~l~N~l~~~-~--k~IIlts~~~p~~l~~l~~rL~S--R~ 260 (445)
T PRK12422 218 -----------------------------G---ATQEEFFHTFNSLHTE-G--KLIVISSTCAPQDLKAMEERLIS--RF 260 (445)
T ss_pred -----------------------------h---hhHHHHHHHHHHHHHC-C--CcEEEecCCCHHHHhhhHHHHHh--hh
Confidence 0 1112233333332221 1 345666654 4 457889998 88
Q ss_pred e--eEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 391 D--MHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 391 d--~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
. ..+.+..|+.+.+..+++......
T Consensus 261 ~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 261 EWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred cCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 5 889999999999999999877644
No 142
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.21 E-value=2.8e-10 Score=108.22 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=90.9
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCC------------------------ceEEEecCCc-CChhHHHHHHHHhC--
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKF------------------------DVFDLQLGNV-TRDSDLRTLLLSTG-- 294 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------------------~i~~l~~~~l-~~~~~L~~l~~~~~-- 294 (525)
..+..||||||||+|||++++++|+.+.. ++..++...- .+-+.++.+...+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 35678999999999999999999999743 2333332211 23356665554442
Q ss_pred ----CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEE
Q 009791 295 ----NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERII 370 (525)
Q Consensus 295 ----~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~iv 370 (525)
.+-|++|||+|.+- ....+.||..|+.. +...++
T Consensus 92 ~~~~~~kviiide~~~l~--------------------------------------~~~~~~Ll~~le~~----~~~~~~ 129 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMN--------------------------------------EAAANALLKTLEEP----PPNTLF 129 (188)
T ss_pred cccCCeEEEEEechhhhC--------------------------------------HHHHHHHHHHhcCC----CCCeEE
Confidence 45699999999773 12456788888763 234678
Q ss_pred EEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 371 VFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 371 I~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
|++||+++.|++++.+ |. ..++++.|+.++...++...
T Consensus 130 il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 130 ILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred EEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 8888888999999998 66 47999999999988777665
No 143
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.20 E-value=1.8e-10 Score=124.97 Aligned_cols=188 Identities=20% Similarity=0.196 Sum_probs=118.4
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHH----H--------h-----HHHH----HHhCCCCcceeeEeCCCCCcHHH
Q 009791 201 VKLEHPATFDTLAMEPDLKATIMEDLDRFV----R--------R-----KEFY----KRVGRAWKRGYLLYGPPGTGKSS 259 (525)
Q Consensus 201 v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl----~--------~-----~~~y----~~~g~~~~rg~LL~GppGTGKTs 259 (525)
|....|..|.+|.+++..-+.++..|..+= . . ++.+ ...+.|.++-+||+||||-||||
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 456789999999999999988888876541 1 0 0111 11345777889999999999999
Q ss_pred HHHHHHHHcCCceEEEecCCcCChhHHHHHHHHh----------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhh
Q 009791 260 LVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLST----------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAG 329 (525)
Q Consensus 260 La~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~----------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~ 329 (525)
||+.||++.||.++.++.++-.+...+++.+..+ .+|..|+|||||-... . ....--
T Consensus 342 LAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~----~---------~Vdvil 408 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR----A---------AVDVIL 408 (877)
T ss_pred HHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH----H---------HHHHHH
Confidence 9999999999999999999987776666665433 4799999999994320 0 000000
Q ss_pred -hhhhccccccC---CCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHH
Q 009791 330 -AAVRKNKTDFA---GGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFR 405 (525)
Q Consensus 330 -~~~~~~~~~~~---~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~ 405 (525)
...+.+....+ ...+..+.--+++| .|-||+.+|.. .-|||+----|...|+|..|......
T Consensus 409 slv~a~~k~~~Gkq~~~~~~rkkkr~~~L------------~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv 474 (877)
T KOG1969|consen 409 SLVKATNKQATGKQAKKDKKRKKKRSKLL------------TRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLV 474 (877)
T ss_pred HHHHhhcchhhcCcccchhhhhhhccccc------------cCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHH
Confidence 00000000000 00011111111111 15688888864 46888522268889999999888765
Q ss_pred HHHHHHhCCc
Q 009791 406 LLAANYLGIT 415 (525)
Q Consensus 406 ~L~~~~l~~~ 415 (525)
+-++.....+
T Consensus 475 ~RL~~IC~rE 484 (877)
T KOG1969|consen 475 ERLNEICHRE 484 (877)
T ss_pred HHHHHHHhhh
Confidence 5555544433
No 144
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.19 E-value=5.4e-10 Score=129.15 Aligned_cols=156 Identities=19% Similarity=0.331 Sum_probs=107.7
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCC----CcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA----WKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR 282 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~ 282 (525)
..|+|.+...+.|.+.+.... .|.. +...+||+||||||||++|++||..+ +.+++.++++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 457888888887777765432 2221 23459999999999999999999988 46889999887643
Q ss_pred hhHHHHH---------------HH---HhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCc
Q 009791 283 DSDLRTL---------------LL---STGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKG 344 (525)
Q Consensus 283 ~~~L~~l---------------~~---~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (525)
...+.++ |. .....+||+|||||.+-
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~------------------------------------ 680 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH------------------------------------ 680 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC------------------------------------
Confidence 3222221 11 12345799999999662
Q ss_pred hhHHHHHHHhhhhcCCC--CCCC-----CceEEEEecCCCC-------------------------CCCccccCCCceee
Q 009791 345 QHMLTLSGLLNFIDGLW--SSCG-----DERIIVFTTNHKE-------------------------RLDPALLRPGRMDM 392 (525)
Q Consensus 345 ~~~~~ls~LLn~idgl~--s~~~-----~~~ivI~TTN~~~-------------------------~LDpaLlRpGRfd~ 392 (525)
....+.||+.+|.-. ...| .+.+||+|||... .+.|.|+. |||.
T Consensus 681 --~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~ 756 (852)
T TIGR03346 681 --PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDE 756 (852)
T ss_pred --HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCe
Confidence 235677787775321 1101 2468999999721 13466776 9999
Q ss_pred EEEcCCCCHHHHHHHHHHHhC
Q 009791 393 HIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 393 ~I~~~~p~~~~r~~L~~~~l~ 413 (525)
.|.|.+++.+....|+...+.
T Consensus 757 IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 757 IVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred EEecCCcCHHHHHHHHHHHHH
Confidence 999999999999999887764
No 145
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.19 E-value=1.8e-10 Score=120.55 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=50.1
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCC-------CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA-------WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV 280 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~-------~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l 280 (525)
.|+|.++.|+.+...+..- |++.+.+ .++++||+||||||||++++++|..++.+++.++++.+
T Consensus 16 ~IiGQe~AkkalavAl~~~------~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNR------WRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHH------HHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 4889999999887766422 2222211 25789999999999999999999999999999988644
No 146
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.18 E-value=1.6e-10 Score=112.81 Aligned_cols=156 Identities=21% Similarity=0.276 Sum_probs=94.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEecCCcCC-------hhHHHHHHHHhCCCeEEEEeccccccCCCC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQLGNVTR-------DSDLRTLLLSTGNRSILVIEDIDCSVDLPD 312 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~~~l~~-------~~~L~~l~~~~~~~sIL~iDdID~~~~~~~ 312 (525)
..++||||+|+|||+|++||++++ +..++++++.+... +..+..+......--+|+|||||.+.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~--- 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG--- 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT---
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC---
Confidence 358999999999999999999986 56678887655421 122334445556788999999998742
Q ss_pred CCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCC---CCccccCCCc
Q 009791 313 RRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKER---LDPALLRPGR 389 (525)
Q Consensus 313 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~---LDpaLlRpGR 389 (525)
...+...|.+.++.+... +..+|+.+...|.. ++|.|.. |
T Consensus 112 ---------------------------------~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S--R 154 (219)
T PF00308_consen 112 ---------------------------------KQRTQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRS--R 154 (219)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH--H
T ss_pred ---------------------------------chHHHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhh--h
Confidence 122445555555555443 23555555556655 4667776 6
Q ss_pred ee--eEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHH-HHHhhcCCCHHHHHHH
Q 009791 390 MD--MHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIE-TLLKTINITPAQVAEQ 442 (525)
Q Consensus 390 fd--~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~-~l~~~~~~tpadi~~~ 442 (525)
|. ..+.+..|+.+.|..+++......+ -.+.+++. -+++...-+..++...
T Consensus 155 l~~Gl~~~l~~pd~~~r~~il~~~a~~~~--~~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 155 LSWGLVVELQPPDDEDRRRILQKKAKERG--IELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HhhcchhhcCCCCHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHhhcCCHHHHHHH
Confidence 54 4789999999999999998876542 23333333 3333334455555443
No 147
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.18 E-value=3.9e-10 Score=121.30 Aligned_cols=190 Identities=14% Similarity=0.239 Sum_probs=114.6
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEecCCc
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQLGNV 280 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~~~l 280 (525)
+.+|++.+-.+.- +.....+..+...+ |.. .++++||||+|||||+|++|+++++ +..++++++.++
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4688886633322 22333343333222 222 3579999999999999999999976 467777776554
Q ss_pred CCh---------hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHH
Q 009791 281 TRD---------SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLS 351 (525)
Q Consensus 281 ~~~---------~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 351 (525)
... ..+........+..+|+||||+.+.+ . ..+..
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~---------------------------------k---~~~~e 226 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY---------------------------------K---EKTNE 226 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC---------------------------------C---HHHHH
Confidence 211 12333333445677999999997632 0 11223
Q ss_pred HHhhhhcCCCCCCCCceEEEEecCC-CC---CCCccccCCCce--eeEEEcCCCCHHHHHHHHHHHhCCcCCC-cccHHH
Q 009791 352 GLLNFIDGLWSSCGDERIIVFTTNH-KE---RLDPALLRPGRM--DMHIHMSYCGPYGFRLLAANYLGITDCE-HKLVAE 424 (525)
Q Consensus 352 ~LLn~idgl~s~~~~~~ivI~TTN~-~~---~LDpaLlRpGRf--d~~I~~~~p~~~~r~~L~~~~l~~~~~~-~~~~~~ 424 (525)
.|.+.++.+... + ..||+|+|. |+ .+++.|.. || ...+.+..|+.+++.++++..+...+.. .-..+.
T Consensus 227 ~lf~l~N~~~~~-~--k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~ev 301 (450)
T PRK14087 227 IFFTIFNNFIEN-D--KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEA 301 (450)
T ss_pred HHHHHHHHHHHc-C--CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 344444433322 1 245666664 43 45788888 77 4778899999999999999888654311 222344
Q ss_pred HHHHHhhcCCCHHHHHHHHH
Q 009791 425 IETLLKTINITPAQVAEQFM 444 (525)
Q Consensus 425 i~~l~~~~~~tpadi~~~l~ 444 (525)
++-++...+-++..+...|.
T Consensus 302 l~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 302 INFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHccCCCHHHHHHHHH
Confidence 45555555666766665553
No 148
>PRK06620 hypothetical protein; Validated
Probab=99.18 E-value=5.7e-10 Score=108.49 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=89.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCC-cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAW-KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD 283 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~-~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~ 283 (525)
+.-+||+++--+.-.. ....+..+.. ..+..+ .+.++||||||||||+|++|+|+..+..++. .... .
T Consensus 11 ~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~--~ 79 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF--N 79 (214)
T ss_pred CCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh--c
Confidence 3448898765442221 3333333321 123322 3689999999999999999999988753322 1111 1
Q ss_pred hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCC
Q 009791 284 SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSS 363 (525)
Q Consensus 284 ~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~ 363 (525)
. .. ..+..+|+|||||.+- ...+-.++|.+.. .
T Consensus 80 ~---~~---~~~~d~lliDdi~~~~--------------------------------------~~~lf~l~N~~~e---~ 112 (214)
T PRK06620 80 E---EI---LEKYNAFIIEDIENWQ--------------------------------------EPALLHIFNIINE---K 112 (214)
T ss_pred h---hH---HhcCCEEEEeccccch--------------------------------------HHHHHHHHHHHHh---c
Confidence 1 11 1245799999999430 1234455555442 2
Q ss_pred CCCceEEEEecCCCCC--CCccccCCCcee--eEEEcCCCCHHHHHHHHHHHhC
Q 009791 364 CGDERIIVFTTNHKER--LDPALLRPGRMD--MHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 364 ~~~~~ivI~TTN~~~~--LDpaLlRpGRfd--~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
+..+|+.++..|.. + |+|+. |+. ..+.+..|+.+.+..+++..+.
T Consensus 113 --g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 113 --QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred --CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 23566665555543 5 78887 774 3689999999999999887765
No 149
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.17 E-value=1.7e-10 Score=119.41 Aligned_cols=154 Identities=19% Similarity=0.275 Sum_probs=102.6
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------ceE------
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF-------DVF------ 273 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~-------~i~------ 273 (525)
-+|..|+|.++.|..|+..+.. +...|+||.||+|||||++++++++.+.. +|.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p 80 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDP 80 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCCh
Confidence 3799999999999988765542 22358999999999999999999888731 111
Q ss_pred ----------------------EEecCCc---CChh------HHHHHHHHh-----------CCCeEEEEeccccccCCC
Q 009791 274 ----------------------DLQLGNV---TRDS------DLRTLLLST-----------GNRSILVIEDIDCSVDLP 311 (525)
Q Consensus 274 ----------------------~l~~~~l---~~~~------~L~~l~~~~-----------~~~sIL~iDdID~~~~~~ 311 (525)
.+.+..+ .++. ++.+.|... ....||++|||+.+-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~--- 157 (350)
T CHL00081 81 ELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD--- 157 (350)
T ss_pred hhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC---
Confidence 0000000 0111 123332211 235799999999773
Q ss_pred CCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC---------CCCCCCCceEEEEecCCCC-CCC
Q 009791 312 DRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG---------LWSSCGDERIIVFTTNHKE-RLD 381 (525)
Q Consensus 312 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg---------l~s~~~~~~ivI~TTN~~~-~LD 381 (525)
..+.+.|++.|+. .....+..+++|+|.|..+ .++
T Consensus 158 -----------------------------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~ 202 (350)
T CHL00081 158 -----------------------------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELR 202 (350)
T ss_pred -----------------------------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCC
Confidence 2345557776643 2212233466777777554 699
Q ss_pred ccccCCCceeeEEEcCCCC-HHHHHHHHHHHhC
Q 009791 382 PALLRPGRMDMHIHMSYCG-PYGFRLLAANYLG 413 (525)
Q Consensus 382 paLlRpGRfd~~I~~~~p~-~~~r~~L~~~~l~ 413 (525)
++|+. ||.++|.+++|+ .+.+.+|++....
T Consensus 203 ~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 203 PQLLD--RFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred HHHHH--HhCceeecCCCCChHHHHHHHHhhhc
Confidence 99999 999999999998 5889999987543
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.17 E-value=4.1e-10 Score=129.53 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=106.9
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCC---Ccce-eeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA---WKRG-YLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR 282 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~---~~rg-~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~ 282 (525)
..|+|.++..+.|.+.+.... .|.. .|.| +||+||||||||.+|+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 357788888887777775432 2322 2344 8999999999999999999998 45788888877532
Q ss_pred hh-------------------HHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCC
Q 009791 283 DS-------------------DLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGK 343 (525)
Q Consensus 283 ~~-------------------~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
.. .|...+.. ...|||+|||||.+-
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka~----------------------------------- 681 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKAH----------------------------------- 681 (852)
T ss_pred hhhhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhcC-----------------------------------
Confidence 21 23333332 567999999999652
Q ss_pred chhHHHHHHHhhhhcCCCCCC--C-----CceEEEEecCCCC-----------------------------CCCccccCC
Q 009791 344 GQHMLTLSGLLNFIDGLWSSC--G-----DERIIVFTTNHKE-----------------------------RLDPALLRP 387 (525)
Q Consensus 344 ~~~~~~ls~LLn~idgl~s~~--~-----~~~ivI~TTN~~~-----------------------------~LDpaLlRp 387 (525)
....+.|+..+|.-.-.. | .+.+||+|||-.. .+.|+|+.
T Consensus 682 ---~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln- 757 (852)
T TIGR03345 682 ---PDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG- 757 (852)
T ss_pred ---HHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc-
Confidence 235566777776432111 1 2469999999421 14577777
Q ss_pred CceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 388 GRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 388 GRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
|++ .|.|...+.+...+|+...+.
T Consensus 758 -Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 758 -RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred -cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 998 788999999999999987764
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.9e-10 Score=124.91 Aligned_cols=156 Identities=20% Similarity=0.322 Sum_probs=115.9
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCC----cceeeEeCCCCCcHHHHHHHHHHHcC---CceEEEecCCcCC
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAW----KRGYLLYGPPGTGKSSLVAAMANYLK---FDVFDLQLGNVTR 282 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~----~rg~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~~~~l~~ 282 (525)
..|+|+++..+.|.+.+.. .+.|+.- -..+||.||.|+|||-||+++|..|. -.++.+|+++...
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 3567777777777666643 3445432 23688999999999999999999996 8899999999866
Q ss_pred hhHHHHHHHHh------------------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCc
Q 009791 283 DSDLRTLLLST------------------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKG 344 (525)
Q Consensus 283 ~~~L~~l~~~~------------------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (525)
...+.+++-.- +..|||+||||+..
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA------------------------------------- 605 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA------------------------------------- 605 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-------------------------------------
Confidence 55555554221 23589999999965
Q ss_pred hhHHHHHHHhhhhcCCCCCCCC-------ceEEEEecCCCC----------------------------CCCccccCCCc
Q 009791 345 QHMLTLSGLLNFIDGLWSSCGD-------ERIIVFTTNHKE----------------------------RLDPALLRPGR 389 (525)
Q Consensus 345 ~~~~~ls~LLn~idgl~s~~~~-------~~ivI~TTN~~~----------------------------~LDpaLlRpGR 389 (525)
....++-||+.+|.-.-..+. +.|||||||--. .+.|+|+. |
T Consensus 606 -HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--R 682 (786)
T COG0542 606 -HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--R 682 (786)
T ss_pred -CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--h
Confidence 135788899999854433333 359999999320 13577777 9
Q ss_pred eeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 390 MDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 390 fd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
+|..|.|...+.+...+|+...+.
T Consensus 683 id~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 683 IDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred cccEEeccCCCHHHHHHHHHHHHH
Confidence 999999999999999999998874
No 152
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.15 E-value=3.8e-10 Score=118.09 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=49.9
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHh-CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRV-GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV 280 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l 280 (525)
.|+|.++.|+.+.-.+..-..+......+ +-..|+++||+||||||||++++++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 47888888888866554321111110111 11245899999999999999999999999999999997644
No 153
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.13 E-value=1.9e-10 Score=116.10 Aligned_cols=150 Identities=22% Similarity=0.326 Sum_probs=97.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc---eEEEecCCc
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD---VFDLQLGNV 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~---i~~l~~~~l 280 (525)
-.|.++++.+|.+.+.-+ ...|..++.. .--.+++|+||||||||+||+.||+...-+ |+.++.+.-
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a 201 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA 201 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc
Confidence 357788888887765443 2222222221 122379999999999999999999988765 555554432
Q ss_pred CChhHHHHHHHHh-------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHH
Q 009791 281 TRDSDLRTLLLST-------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGL 353 (525)
Q Consensus 281 ~~~~~L~~l~~~~-------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 353 (525)
+..++|.+|.++ .++.|||||||+.+.. . ....|
T Consensus 202 -~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk----s----------------------------------QQD~f 242 (554)
T KOG2028|consen 202 -KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK----S----------------------------------QQDTF 242 (554)
T ss_pred -chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh----h----------------------------------hhhcc
Confidence 446788888776 3689999999998731 1 11123
Q ss_pred hhhhcCCCCCCCCceEEE-EecCCC-CCCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 354 LNFIDGLWSSCGDERIIV-FTTNHK-ERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 354 Ln~idgl~s~~~~~~ivI-~TTN~~-~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
|-.++ +| .+++| +||..| -.|..||+. |. ..+-+...+.+....|+.+-
T Consensus 243 LP~VE-----~G-~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 243 LPHVE-----NG-DITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred cceec-----cC-ceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHH
Confidence 33222 23 35555 466666 579999998 44 23556667777777777763
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.12 E-value=1.1e-09 Score=126.22 Aligned_cols=155 Identities=19% Similarity=0.302 Sum_probs=105.7
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCC---Cc-ceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA---WK-RGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR 282 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~---~~-rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~ 282 (525)
+.|+|+++..+.|.+.+... +.|.. -| ..+||+||||||||+||+++|..+ +.+++.+++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 45778877777776665422 22321 12 348999999999999999999998 46788888877632
Q ss_pred hhH-------------------HHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCC
Q 009791 283 DSD-------------------LRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGK 343 (525)
Q Consensus 283 ~~~-------------------L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
... |...+. ....+||+|||||.+-
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~-~~p~~VvllDeieka~----------------------------------- 624 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVR-KKPYTVVLFDEIEKAH----------------------------------- 624 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHH-hCCCeEEEECChhhCC-----------------------------------
Confidence 211 222222 1234899999999762
Q ss_pred chhHHHHHHHhhhhcCCCCC--C-----CCceEEEEecCCCCC-------------------------------------
Q 009791 344 GQHMLTLSGLLNFIDGLWSS--C-----GDERIIVFTTNHKER------------------------------------- 379 (525)
Q Consensus 344 ~~~~~~ls~LLn~idgl~s~--~-----~~~~ivI~TTN~~~~------------------------------------- 379 (525)
....+.||..+|.-.-. . -.+.+||+|||....
T Consensus 625 ---~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (821)
T CHL00095 625 ---PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQF 701 (821)
T ss_pred ---HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHh
Confidence 23567788888743211 0 134689999995311
Q ss_pred CCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 380 LDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 380 LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
+.|+|+. |+|..|.|...+.++..+|+...+.
T Consensus 702 f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 702 FRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred cCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2355666 9999999999999999999887764
No 155
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.10 E-value=4.6e-10 Score=115.98 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=101.2
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-------CCceE-------
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-------KFDVF------- 273 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-------~~~i~------- 273 (525)
.|..|+|.+++|..++-.+.. +...++||.|+||||||++++++++.+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 478999999999887554431 123579999999999999999999887 22211
Q ss_pred ------E------------------EecC------CcCChhHHHHHHH-----------HhCCCeEEEEeccccccCCCC
Q 009791 274 ------D------------------LQLG------NVTRDSDLRTLLL-----------STGNRSILVIEDIDCSVDLPD 312 (525)
Q Consensus 274 ------~------------------l~~~------~l~~~~~L~~l~~-----------~~~~~sIL~iDdID~~~~~~~ 312 (525)
. +++. .+...-++...+. ...+..+|+||||+.+-
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 0 0111 1111223333321 11345799999999762
Q ss_pred CCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC---------CCCCCCCceEEEEecCCCC-CCCc
Q 009791 313 RRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG---------LWSSCGDERIIVFTTNHKE-RLDP 382 (525)
Q Consensus 313 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg---------l~s~~~~~~ivI~TTN~~~-~LDp 382 (525)
..+.+.|++.|+. .....+..+++|+|+|..+ .|++
T Consensus 145 ----------------------------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~ 190 (337)
T TIGR02030 145 ----------------------------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRP 190 (337)
T ss_pred ----------------------------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCH
Confidence 2355666666642 2222233467777877554 6999
Q ss_pred cccCCCceeeEEEcCCCCH-HHHHHHHHHHhC
Q 009791 383 ALLRPGRMDMHIHMSYCGP-YGFRLLAANYLG 413 (525)
Q Consensus 383 aLlRpGRfd~~I~~~~p~~-~~r~~L~~~~l~ 413 (525)
+|+. ||..++.+++|.. +++.+|+++...
T Consensus 191 ~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 191 QLLD--RFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred HHHh--hcceEEECCCCCCHHHHHHHHHhhhh
Confidence 9999 9999999999986 888888887543
No 156
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.09 E-value=1.1e-09 Score=115.95 Aligned_cols=26 Identities=38% Similarity=0.721 Sum_probs=24.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
++.++|+||||||||++|+++|+.+.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999999885
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=4.1e-09 Score=108.24 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=120.1
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-----------------
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF----------------- 270 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~----------------- 270 (525)
.|++|+|.+..++.+...+.. ...+..||||||+|+||+++|.++|+.+-+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 488999999999888776641 134568999999999999999999998732
Q ss_pred -ceEEEecCCc-----------------------CChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCC
Q 009791 271 -DVFDLQLGNV-----------------------TRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENN 320 (525)
Q Consensus 271 -~i~~l~~~~l-----------------------~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~ 320 (525)
+++.+..... ..-..++++..... ..-|++||++|.+-
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 2233332110 01124555544332 35699999998762
Q ss_pred chhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCC
Q 009791 321 ADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCG 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~ 400 (525)
....+.||..|+... ..++|++|++++.|-|.++. |. ..|+|+.++
T Consensus 138 --------------------------~~aaNaLLK~LEEPp-----~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~ 183 (314)
T PRK07399 138 --------------------------EAAANALLKTLEEPG-----NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLS 183 (314)
T ss_pred --------------------------HHHHHHHHHHHhCCC-----CCeEEEEECChHhCcHHHHh--hc-eEEecCCCC
Confidence 235678999998742 34677888899999999998 76 679999999
Q ss_pred HHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcCCCHHHHHHHH
Q 009791 401 PYGFRLLAANYLGITDCEHKLVAEIETLLKTINITPAQVAEQF 443 (525)
Q Consensus 401 ~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~~tpadi~~~l 443 (525)
.++..+.+....... ....+...++..++-+|....+.+
T Consensus 184 ~~~~~~~L~~~~~~~----~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 184 DEQLEQVLKRLGDEE----ILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred HHHHHHHHHHhhccc----cchhHHHHHHHHcCCCHHHHHHHH
Confidence 999888887654322 111224556666677777665544
No 158
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=3e-09 Score=109.84 Aligned_cols=124 Identities=20% Similarity=0.278 Sum_probs=94.2
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCC------------------------ceEEEecCC---cCChhHHHHHHHHhC-
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKF------------------------DVFDLQLGN---VTRDSDLRTLLLSTG- 294 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~------------------------~i~~l~~~~---l~~~~~L~~l~~~~~- 294 (525)
.+.+|||+||+|+||+++|.++|+.+.+ +++.+.... ...-+.+|++.....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 4668999999999999999999999854 455554421 224466777665443
Q ss_pred -----CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceE
Q 009791 295 -----NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERI 369 (525)
Q Consensus 295 -----~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~i 369 (525)
..-|++||++|.+- ....+.||..++.- ++..+
T Consensus 101 ~~~~~~~kv~iI~~a~~m~--------------------------------------~~aaNaLLK~LEEP----p~~~~ 138 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMN--------------------------------------RNAANALLKSLEEP----SGDTV 138 (328)
T ss_pred ccccCCCeEEEECChhhCC--------------------------------------HHHHHHHHHHHhCC----CCCeE
Confidence 34588999999772 34678899998874 34588
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 370 IVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 370 vI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
+|++|++++.|.|.++. |.- .++|+.|+.++....+...
T Consensus 139 fiL~t~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 139 LLLISHQPSRLLPTIKS--RCQ-QQACPLPSNEESLQWLQQA 177 (328)
T ss_pred EEEEECChhhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHh
Confidence 89999999999999998 774 5999999998877666554
No 159
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.07 E-value=6.6e-10 Score=109.89 Aligned_cols=98 Identities=23% Similarity=0.411 Sum_probs=71.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCC
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGN 279 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~ 279 (525)
..++.+|++.....+..+.++..+..|.... . ....+++|+||||||||+|+.|||+++ +..++.++..+
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 3566799998876655555666666665421 1 113589999999999999999999998 77888887766
Q ss_pred cCC---------hhHHHHHHHHhCCCeEEEEeccccc
Q 009791 280 VTR---------DSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 280 l~~---------~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
+.. +....+++....+..+|+|||+++.
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 531 2233456666678889999999975
No 160
>PRK09087 hypothetical protein; Validated
Probab=99.07 E-value=1.4e-09 Score=106.71 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=76.0
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhh
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQS 325 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~ 325 (525)
.++||||+|+|||+|++++|+..+..++.. ..+. ...+ .... ..+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~-~~~~----~~~~-~~~l~iDDi~~~~~---------------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIG-SDAA----NAAA-EGPVLIEDIDAGGF---------------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcc-hHHH----Hhhh-cCeEEEECCCCCCC----------------
Confidence 489999999999999999999876654433 2221 1111 1111 25889999996521
Q ss_pred HhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEcCCCC
Q 009791 326 KAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKER---LDPALLRPGRMD--MHIHMSYCG 400 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~---LDpaLlRpGRfd--~~I~~~~p~ 400 (525)
.. ..|++.++.+... +..+|+.++..|.. ..|.|+. |+. ..+++..|+
T Consensus 102 --------------------~~---~~lf~l~n~~~~~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd 154 (226)
T PRK09087 102 --------------------DE---TGLFHLINSVRQA--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPD 154 (226)
T ss_pred --------------------CH---HHHHHHHHHHHhC--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCC
Confidence 01 1244444433322 22344444444432 3688887 775 789999999
Q ss_pred HHHHHHHHHHHhCCc
Q 009791 401 PYGFRLLAANYLGIT 415 (525)
Q Consensus 401 ~~~r~~L~~~~l~~~ 415 (525)
.+.+.++++..+...
T Consensus 155 ~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 155 DALLSQVIFKLFADR 169 (226)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999888644
No 161
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.07 E-value=2e-10 Score=107.72 Aligned_cols=108 Identities=25% Similarity=0.436 Sum_probs=75.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCC----ceEEEecCCcCC----hhHHHHHHHHhC------CCeEEEEeccccccC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKF----DVFDLQLGNVTR----DSDLRTLLLSTG------NRSILVIEDIDCSVD 309 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~----~i~~l~~~~l~~----~~~L~~l~~~~~------~~sIL~iDdID~~~~ 309 (525)
...+||.||+|||||.|++++|..+.. +++.+|++.+.. ...+..++.... ...||+|||||.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 446899999999999999999999996 999999999987 555555555443 346999999998853
Q ss_pred CCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCC--CC-----CceEEEEecCCCC
Q 009791 310 LPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSS--CG-----DERIIVFTTNHKE 378 (525)
Q Consensus 310 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~--~~-----~~~ivI~TTN~~~ 378 (525)
+... +.+.......+.||..||+-.-. .+ .+.++|+|+|--.
T Consensus 83 ---~~~~------------------------~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 ---SNSG------------------------GADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp ---TTTT------------------------CSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ---cccc------------------------cchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 1110 11122345678888888754221 11 2469999999653
No 162
>PRK08116 hypothetical protein; Validated
Probab=99.06 E-value=8.9e-10 Score=110.78 Aligned_cols=149 Identities=20% Similarity=0.309 Sum_probs=88.8
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC-
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR- 282 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~- 282 (525)
.+|++....+.. +.+...+..|... |.... ...+|++|||+||||||+|+.|||+++ +.+++.++..++..
T Consensus 82 ~tFdnf~~~~~~-~~a~~~a~~y~~~---~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 82 STFENFLFDKGS-EKAYKIARKYVKK---FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred cchhcccCChHH-HHHHHHHHHHHHH---HHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 467776644443 2344444444432 12211 234689999999999999999999987 77888887665421
Q ss_pred ---------hhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHH
Q 009791 283 ---------DSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGL 353 (525)
Q Consensus 283 ---------~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 353 (525)
......++....+..+|+|||+...- ........|
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~------------------------------------~t~~~~~~l 200 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLVNADLLILDDLGAER------------------------------------DTEWAREKV 200 (268)
T ss_pred HHHHHhccccccHHHHHHHhcCCCEEEEecccCCC------------------------------------CCHHHHHHH
Confidence 01223344455666799999996321 011234556
Q ss_pred hhhhcCCCCCCCCceEEEEecCCC-CC----CCccccCCCce---eeEEEcCCCCH
Q 009791 354 LNFIDGLWSSCGDERIIVFTTNHK-ER----LDPALLRPGRM---DMHIHMSYCGP 401 (525)
Q Consensus 354 Ln~idgl~s~~~~~~ivI~TTN~~-~~----LDpaLlRpGRf---d~~I~~~~p~~ 401 (525)
.+.||.... .+..+|+|||.+ +. +++.+.. |+ ...|.+.-++.
T Consensus 201 ~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 201 YNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 666665433 224688888865 33 4666766 63 34455555543
No 163
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=2.1e-09 Score=111.34 Aligned_cols=146 Identities=20% Similarity=0.298 Sum_probs=103.8
Q ss_pred Ccccccc-ChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC----------------
Q 009791 208 TFDTLAM-EPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF---------------- 270 (525)
Q Consensus 208 ~f~~l~g-~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~---------------- 270 (525)
.|++|.| .+.+++.+...+. ....+..||||||+|+||+++|+++|+.+-+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4677877 6667666655442 1235678999999999999999999998742
Q ss_pred --------ceEEEecCCc-CChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhcc
Q 009791 271 --------DVFDLQLGNV-TRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKN 335 (525)
Q Consensus 271 --------~i~~l~~~~l-~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 335 (525)
+++.+....- ..-..++.+....+ ..-|++|||+|.+-
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------------------- 123 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------------------- 123 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC---------------------------
Confidence 2333322211 12346666654432 34599999999762
Q ss_pred ccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHH
Q 009791 336 KTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAAN 410 (525)
Q Consensus 336 ~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~ 410 (525)
....+.||..|+.. ++..++|++|+.++.|.|+++. |. ..++|..|+.++..+.+..
T Consensus 124 -----------~~a~NaLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 124 -----------ASAANSLLKFLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -----------HHHHHHHHHHhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 23567899999874 3457888899999999999988 65 5699999999887666653
No 164
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.03 E-value=1e-09 Score=96.58 Aligned_cols=65 Identities=26% Similarity=0.435 Sum_probs=48.9
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCc---eEEEecCCcCC--------------------hhHHHHHHHHhC--CCeE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFD---VFDLQLGNVTR--------------------DSDLRTLLLSTG--NRSI 298 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~---i~~l~~~~l~~--------------------~~~L~~l~~~~~--~~sI 298 (525)
+..++|+||||||||++++++|..+... ++.+++..... ....+..+..+. .+.|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999875 78887765321 223444444443 3599
Q ss_pred EEEecccccc
Q 009791 299 LVIEDIDCSV 308 (525)
Q Consensus 299 L~iDdID~~~ 308 (525)
|+|||++.+.
T Consensus 82 iiiDei~~~~ 91 (148)
T smart00382 82 LILDEITSLL 91 (148)
T ss_pred EEEECCcccC
Confidence 9999999875
No 165
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.02 E-value=6.8e-09 Score=107.19 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=50.9
Q ss_pred CCcc-ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------ceEEEec
Q 009791 207 ATFD-TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF-------DVFDLQL 277 (525)
Q Consensus 207 ~~f~-~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~-------~i~~l~~ 277 (525)
.-|+ ++.|.++.+++|++.+..... .. ...++.++|+||||||||||++++|+.++. ++|.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~------g~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQ------GL-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHh------cC-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 4567 899999998888877654432 11 234578999999999999999999999976 8998876
No 166
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.00 E-value=2.2e-10 Score=101.01 Aligned_cols=106 Identities=27% Similarity=0.272 Sum_probs=61.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHH---------HHHhC---CCeEEEEeccccccCCCCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTL---------LLSTG---NRSILVIEDIDCSVDLPDR 313 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l---------~~~~~---~~sIL~iDdID~~~~~~~r 313 (525)
.+||.|+||+|||++|+++|..++..+.++.++.-...+++.-. |.-.. -..|+++|||...-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 37999999999999999999999999999988642212222111 00001 13699999999652
Q ss_pred CCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC-------CCCCCCCceEEEEecCCCC-----CCC
Q 009791 314 RNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG-------LWSSCGDERIIVFTTNHKE-----RLD 381 (525)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg-------l~s~~~~~~ivI~TTN~~~-----~LD 381 (525)
..+.+.||..|.. ..-..++..+||+|-|..+ .|+
T Consensus 76 ---------------------------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lp 122 (131)
T PF07726_consen 76 ---------------------------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLP 122 (131)
T ss_dssp ---------------------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------
T ss_pred ---------------------------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCC
Confidence 3577888887742 2223355689999999876 788
Q ss_pred ccccCCCcee
Q 009791 382 PALLRPGRMD 391 (525)
Q Consensus 382 paLlRpGRfd 391 (525)
+|++. ||-
T Consensus 123 ea~~D--RF~ 130 (131)
T PF07726_consen 123 EAQLD--RFM 130 (131)
T ss_dssp HHHHT--TSS
T ss_pred HHHhc--ccc
Confidence 99988 873
No 167
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=3.5e-08 Score=102.14 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=91.6
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCCc-------------------------eEEEecC------------------
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKFD-------------------------VFDLQLG------------------ 278 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~~-------------------------i~~l~~~------------------ 278 (525)
..+.+|||+||+|+||+++|.++|+.+.+. ++.+...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 557799999999999999999999988542 2222211
Q ss_pred -----------CcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCC
Q 009791 279 -----------NVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAG 341 (525)
Q Consensus 279 -----------~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (525)
....-+++|.+..... ..-|++||++|.+-
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------------------------- 145 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------------------------- 145 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC---------------------------------
Confidence 0112245565554442 23488888888662
Q ss_pred CCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 342 GKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 342 ~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
....+.||..++.- +...++|++|++++.|.|.+++ |. ..|.|+.|+.++..+.+...
T Consensus 146 -----~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 146 -----VAAANALLKTLEEP----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred -----HHHHHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 34678899999964 5668999999999999999998 77 68999999998887776653
No 168
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.96 E-value=5.3e-09 Score=117.21 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=101.3
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-------------------
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL------------------- 268 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l------------------- 268 (525)
.|..|+|.+.+|..+.-.+. . +--.|+||+||||||||+++++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av----~---------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV----D---------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh----C---------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 47899999888866643322 1 112479999999999999999999988
Q ss_pred ----------------CCceEEEecCCc----CChhHHHHHHHH-----------hCCCeEEEEeccccccCCCCCCCCC
Q 009791 269 ----------------KFDVFDLQLGNV----TRDSDLRTLLLS-----------TGNRSILVIEDIDCSVDLPDRRNGN 317 (525)
Q Consensus 269 ----------------~~~i~~l~~~~l----~~~~~L~~l~~~-----------~~~~sIL~iDdID~~~~~~~r~~~~ 317 (525)
..+++.+.++.. ....++...+.. .....|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 245555544432 112223333321 1245699999999873
Q ss_pred CCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC---------CCCCCCceEEEEecCCC-CCCCccccCC
Q 009791 318 ENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL---------WSSCGDERIIVFTTNHK-ERLDPALLRP 387 (525)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl---------~s~~~~~~ivI~TTN~~-~~LDpaLlRp 387 (525)
..+.+.||+.|+.- .......+++|+|+|.. ..|.++|+.
T Consensus 140 -----------------------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d- 189 (633)
T TIGR02442 140 -----------------------------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD- 189 (633)
T ss_pred -----------------------------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh-
Confidence 23566777777521 11112347888898854 368899999
Q ss_pred CceeeEEEcCCCC-HHHHHHHHHHHh
Q 009791 388 GRMDMHIHMSYCG-PYGFRLLAANYL 412 (525)
Q Consensus 388 GRfd~~I~~~~p~-~~~r~~L~~~~l 412 (525)
||+.+|.++++. .+++.+++...+
T Consensus 190 -R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 190 -RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred -hcceEEEccCCCchHHHHHHHHHHH
Confidence 999999999886 466777776543
No 169
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.9e-08 Score=105.22 Aligned_cols=153 Identities=19% Similarity=0.204 Sum_probs=106.3
Q ss_pred cccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc-----eEEEecCCcCChh--
Q 009791 212 LAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD-----VFDLQLGNVTRDS-- 284 (525)
Q Consensus 212 l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~-----i~~l~~~~l~~~~-- 284 (525)
+..-+++.+++...+..++.+. .|..+++|||||||||..++.++.++.-. +++++|....+..
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~---------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGE---------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCC---------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 7777788888887776555432 23359999999999999999999999544 7889988764321
Q ss_pred -----------------------HHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCC
Q 009791 285 -----------------------DLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAG 341 (525)
Q Consensus 285 -----------------------~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (525)
.+.+.+.......||++||+|.++. +
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~---~---------------------------- 138 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD---K---------------------------- 138 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc---c----------------------------
Confidence 1222222223578999999999874 0
Q ss_pred CCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCC---CCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 342 GKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHK---ERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 342 ~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~---~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
. ..++-.|+..-+.. ...+.+|+.+|.. +.|||.+...= -..+|.|+.-+.+|...|+..-..
T Consensus 139 -~---~~~LY~L~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s~l-~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 139 -D---GEVLYSLLRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKSSL-GPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred -c---chHHHHHHhhcccc----ceeEEEEEEeccHHHHHHhhhhhhhcc-CcceeeeCCCCHHHHHHHHHHHHH
Confidence 0 13455555544443 2347888999976 57888887521 234589999999999999987654
No 170
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.95 E-value=7.4e-09 Score=110.48 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=81.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCC--ceEEEecC-----CcCChhHHHHH-----HHH-h----CCCeEEEEecccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKF--DVFDLQLG-----NVTRDSDLRTL-----LLS-T----GNRSILVIEDIDC 306 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~--~i~~l~~~-----~l~~~~~L~~l-----~~~-~----~~~sIL~iDdID~ 306 (525)
...+||+||||||||++|+++|...+. ++..+.+. ++.....+... |.. . ....|||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 457999999999999999999998753 33333322 11111111111 111 1 1234999999985
Q ss_pred ccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhc-CCCCCCC-----CceEEEEecCCCC--
Q 009791 307 SVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFID-GLWSSCG-----DERIIVFTTNHKE-- 378 (525)
Q Consensus 307 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~id-gl~s~~~-----~~~ivI~TTN~~~-- 378 (525)
+. ..+.+.||..|. +.....+ ..+++|+|||...
T Consensus 119 as--------------------------------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~ 160 (498)
T PRK13531 119 AG--------------------------------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEA 160 (498)
T ss_pred CC--------------------------------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCccc
Confidence 42 457788888883 3222111 2357777888432
Q ss_pred -CCCccccCCCceeeEEEcCCCC-HHHHHHHHHHH
Q 009791 379 -RLDPALLRPGRMDMHIHMSYCG-PYGFRLLAANY 411 (525)
Q Consensus 379 -~LDpaLlRpGRfd~~I~~~~p~-~~~r~~L~~~~ 411 (525)
...+|+.. ||-..|.+|+|+ .+++..|+...
T Consensus 161 g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 161 DSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 23349999 999999999997 57778888764
No 171
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=1.1e-08 Score=113.31 Aligned_cols=204 Identities=20% Similarity=0.241 Sum_probs=117.9
Q ss_pred cceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEE-E
Q 009791 197 RWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFD-L 275 (525)
Q Consensus 197 ~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~-l 275 (525)
.|.. ...|.++++|++.++..+.+...+... ..+....+.++|+||||||||++++++|++++..++. .
T Consensus 73 pW~e--KyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 73 PWVE--KYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred chHH--HhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 5643 478999999999998888766655421 1223445569999999999999999999999876544 1
Q ss_pred ecC---C------------------cCChhHHHHHHHHh------------CCCeEEEEeccccccCCCCCCCCCCCCch
Q 009791 276 QLG---N------------------VTRDSDLRTLLLST------------GNRSILVIEDIDCSVDLPDRRNGNENNAD 322 (525)
Q Consensus 276 ~~~---~------------------l~~~~~L~~l~~~~------------~~~sIL~iDdID~~~~~~~r~~~~~~~~~ 322 (525)
+.. . ......+..++..+ .++.||+|||||.++. +
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~---r--------- 210 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY---R--------- 210 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch---h---------
Confidence 110 0 01123344444332 2467999999997752 1
Q ss_pred hhhHhhhhhhhccccccCCCCchhHHHHHHHhh--hhcCCCCCCCCceEEEEecCCCC--------------CCCccccC
Q 009791 323 AQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN--FIDGLWSSCGDERIIVFTTNHKE--------------RLDPALLR 386 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn--~idgl~s~~~~~~ivI~TTN~~~--------------~LDpaLlR 386 (525)
....+..+|. ..+. +.-.+|+.+|..+. .|.++++.
T Consensus 211 -----------------------~~~~lq~lLr~~~~e~-----~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls 262 (637)
T TIGR00602 211 -----------------------DTRALHEILRWKYVSI-----GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILE 262 (637)
T ss_pred -----------------------hHHHHHHHHHHHhhcC-----CCceEEEEecCCccccccccccccchhcccCHhHhc
Confidence 1113444444 2221 11123333442221 13477874
Q ss_pred CCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcCC-CHHHHHHHHH-cCCCHHHHHHHHHHHH
Q 009791 387 PGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTINI-TPAQVAEQFM-KSEDADVALAALIKLL 460 (525)
Q Consensus 387 pGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~~-tpadi~~~l~-~~~~~~~al~~l~~al 460 (525)
..|+ .+|.|...+....+..+...+.... .... ....+ ++..+..++. ..+|...|+..|.-++
T Consensus 263 ~~rv-~~I~FnPia~t~l~K~L~rIl~~E~--~~~~-------~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 263 EPRV-SNISFNPIAPTIMKKFLNRIVTIEA--KKNG-------EKIKVPKKTSVELLCQGCSGDIRSAINSLQFSS 328 (637)
T ss_pred ccce-eEEEeCCCCHHHHHHHHHHHHHhhh--hccc-------cccccCCHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3355 4799999999998888877775431 0000 00011 2233333332 3467777777776654
No 172
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.93 E-value=3.5e-09 Score=108.31 Aligned_cols=97 Identities=23% Similarity=0.346 Sum_probs=69.8
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC-
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT- 281 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~- 281 (525)
.++|+++.....-+..+.+....|+..- .. | +..+|++||||||||||+|+.|||+++ |..+..+.+.++.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~---~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAY---PP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHh---hc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 4678888776655555666556666432 11 1 346799999999999999999999998 7777777766542
Q ss_pred ------ChhHHHHHHHHhCCCeEEEEeccccc
Q 009791 282 ------RDSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 282 ------~~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
.+..+.+.+....+..+|+||||..-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 12235566677778899999999853
No 173
>PRK12377 putative replication protein; Provisional
Probab=98.92 E-value=5.1e-09 Score=103.82 Aligned_cols=95 Identities=20% Similarity=0.299 Sum_probs=63.8
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR 282 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~ 282 (525)
..+|++.....+..+.+...+..|...- .. ...+++|+||||||||+|+.|||+++ +..++.+...++..
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~a~~~a~~~---~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQAKSIADEL---MT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred cCCcCCcccCChhHHHHHHHHHHHHHHH---Hh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 3478887654444444555554444321 11 23689999999999999999999998 56777776655421
Q ss_pred --------hhHHHHHHHHhCCCeEEEEeccccc
Q 009791 283 --------DSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 283 --------~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
.....+++....+..+|+||||...
T Consensus 143 ~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 143 RLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1123456666778899999999854
No 174
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2e-08 Score=105.84 Aligned_cols=136 Identities=24% Similarity=0.305 Sum_probs=98.7
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEE-ecCCc------CChhHHHHHHHHhC--CCeEEEEeccccccCCCCC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL-QLGNV------TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDR 313 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l-~~~~l------~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r 313 (525)
.-.++||+||||+|||+||+.||...++||+.+ +..++ .....+.+.|..+. .-+||++|||+.+++..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v-- 614 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV-- 614 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc--
Confidence 345799999999999999999999999999976 32222 23456888898874 46999999999997521
Q ss_pred CCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCc-cccCCCceee
Q 009791 314 RNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDP-ALLRPGRMDM 392 (525)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDp-aLlRpGRfd~ 392 (525)
.-+...+..++..|+.++...... |...+|++||...+-|-. .++. .|+.
T Consensus 615 --------------------------pIGPRfSN~vlQaL~VllK~~ppk-g~kLli~~TTS~~~vL~~m~i~~--~F~~ 665 (744)
T KOG0741|consen 615 --------------------------PIGPRFSNLVLQALLVLLKKQPPK-GRKLLIFGTTSRREVLQEMGILD--CFSS 665 (744)
T ss_pred --------------------------ccCchhhHHHHHHHHHHhccCCCC-CceEEEEecccHHHHHHHcCHHH--hhhh
Confidence 123456678889999888876432 444566667777665543 5556 8999
Q ss_pred EEEcCCCCH-HHHHHHHH
Q 009791 393 HIHMSYCGP-YGFRLLAA 409 (525)
Q Consensus 393 ~I~~~~p~~-~~r~~L~~ 409 (525)
.|++|..+. ++...++.
T Consensus 666 ~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 666 TIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred eeecCccCchHHHHHHHH
Confidence 999998776 44444444
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.2e-09 Score=119.68 Aligned_cols=155 Identities=21% Similarity=0.294 Sum_probs=107.2
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceEEEec
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVFDLQL 277 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~~l~~ 277 (525)
.+|-|+|-++..+.+++.|.+ ..++.-+|.|+||+|||.++..+|... +..++.+|+
T Consensus 168 klDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 578899988888888877652 234556899999999999999999876 678999999
Q ss_pred CCcCC--------hhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhH
Q 009791 278 GNVTR--------DSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHM 347 (525)
Q Consensus 278 ~~l~~--------~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (525)
+.+.. +..|+.++.+.. .+.|||||||+.+.+.-...+ . .
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-----------------------------~-a 284 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-----------------------------G-A 284 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-----------------------------c-c
Confidence 98842 467777776654 389999999999975211111 0 1
Q ss_pred HHHHHHhhhhcCCCCCCCCceEEEEecCCCC----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 348 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKE----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 348 ~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
.-.+ |.+.-..+ .|+-++|-+||-.-- .=|+||-| ||. .|.+..|+.++-..|++-.-
T Consensus 285 ~DAa---NiLKPaLA-RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 285 MDAA---NLLKPALA-RGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred cchh---hhhHHHHh-cCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHH
Confidence 1112 22222222 244455555664221 13999999 995 69999999999888877543
No 176
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.91 E-value=2.9e-08 Score=92.35 Aligned_cols=112 Identities=19% Similarity=0.301 Sum_probs=81.1
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcC-----------------------CceEEEecCCc---CChhHHHHHHHHhC-
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLK-----------------------FDVFDLQLGNV---TRDSDLRTLLLSTG- 294 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~-----------------------~~i~~l~~~~l---~~~~~L~~l~~~~~- 294 (525)
..+..||||||+|+||+++|.++|+.+- .+++.++.... ..-+.++++.....
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 4567899999999999999999998872 34556655543 24567777766553
Q ss_pred -----CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceE
Q 009791 295 -----NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERI 369 (525)
Q Consensus 295 -----~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~i 369 (525)
..-|++|||+|.+- ....+.||..|+.. +...+
T Consensus 97 ~~~~~~~KviiI~~ad~l~--------------------------------------~~a~NaLLK~LEep----p~~~~ 134 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLT--------------------------------------EEAQNALLKTLEEP----PENTY 134 (162)
T ss_dssp S-TTSSSEEEEEETGGGS---------------------------------------HHHHHHHHHHHHST----TTTEE
T ss_pred HHhcCCceEEEeehHhhhh--------------------------------------HHHHHHHHHHhcCC----CCCEE
Confidence 34599999999773 34678899999985 35589
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEcCC
Q 009791 370 IVFTTNHKERLDPALLRPGRMDMHIHMSY 398 (525)
Q Consensus 370 vI~TTN~~~~LDpaLlRpGRfd~~I~~~~ 398 (525)
+|++|++++.|.|.++. |. ..|.|+.
T Consensus 135 fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 135 FILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEECChHHChHHHHh--hc-eEEecCC
Confidence 99999999999999998 65 4566654
No 177
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.90 E-value=1.5e-08 Score=103.99 Aligned_cols=118 Identities=20% Similarity=0.315 Sum_probs=86.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC------------------------CceEEEecCCcCC----hhHHHHHHHHhC-
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK------------------------FDVFDLQLGNVTR----DSDLRTLLLSTG- 294 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~------------------------~~i~~l~~~~l~~----~~~L~~l~~~~~- 294 (525)
+..+|||||||||||++|.++|+++. .+++.++.++... ...++++.....
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE 103 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhcc
Confidence 33799999999999999999999997 5788888877654 344555554432
Q ss_pred -----CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceE
Q 009791 295 -----NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERI 369 (525)
Q Consensus 295 -----~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~i 369 (525)
..-|++|||+|.+- ....+.|+..+... +....
T Consensus 104 ~~~~~~~kviiidead~mt--------------------------------------~~A~nallk~lEep----~~~~~ 141 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLT--------------------------------------EDAANALLKTLEEP----PKNTR 141 (325)
T ss_pred CCCCCCceEEEeCcHHHHh--------------------------------------HHHHHHHHHHhccC----CCCeE
Confidence 34699999999773 13456677766654 34478
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHH
Q 009791 370 IVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRL 406 (525)
Q Consensus 370 vI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~ 406 (525)
+|++||+++.+-|.+.. |. ..+.|+.|+...+..
T Consensus 142 ~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 142 FILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred EEEEcCChhhccchhhh--cc-eeeecCCchHHHHHH
Confidence 89999999999998887 65 457887765554433
No 178
>PRK08181 transposase; Validated
Probab=98.84 E-value=9.4e-09 Score=103.14 Aligned_cols=64 Identities=27% Similarity=0.490 Sum_probs=49.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC-------hhHHHHHHHHhCCCeEEEEeccccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR-------DSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~-------~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
..+++|+||||||||+|+.|+|+++ |+.++.++..++.. +..+.+.+....+..+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 4689999999999999999999865 67777777655421 2334556666678899999999865
No 179
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.4e-08 Score=101.36 Aligned_cols=65 Identities=31% Similarity=0.451 Sum_probs=54.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC--------hhHHHHHHHHh------CCCeEEEEecccccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR--------DSDLRTLLLST------GNRSILVIEDIDCSV 308 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~--------~~~L~~l~~~~------~~~sIL~iDdID~~~ 308 (525)
+..+||.||.|||||.||+.+|..|+.||-.-|++++.. +.-|.++++.+ .++.||+|||||.+.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIa 175 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIA 175 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhh
Confidence 346999999999999999999999999999999998842 23466666655 368999999999984
No 180
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.83 E-value=9.4e-09 Score=98.33 Aligned_cols=46 Identities=30% Similarity=0.528 Sum_probs=35.6
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.|++|.|++..|..+.-... | ..++||+||||||||++|+++...|
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999987754332 3 3589999999999999999999877
No 181
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.83 E-value=1.4e-08 Score=111.03 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=84.0
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEE----ecCCcCChhHHHHH----------HHHhCCCeEEEEeccccccCCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDL----QLGNVTRDSDLRTL----------LLSTGNRSILVIEDIDCSVDLP 311 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l----~~~~l~~~~~L~~l----------~~~~~~~sIL~iDdID~~~~~~ 311 (525)
.+||+|+||||||++++++++......+.. ++..+.. ..++.. ........+++|||+|.+-
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~--- 313 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMD--- 313 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhCC---
Confidence 499999999999999999999886554432 2211211 111110 0112356899999999763
Q ss_pred CCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC---------CCCCCCCceEEEEecCCCC----
Q 009791 312 DRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG---------LWSSCGDERIIVFTTNHKE---- 378 (525)
Q Consensus 312 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg---------l~s~~~~~~ivI~TTN~~~---- 378 (525)
..+.+.|+..|+. ....-.....||+|+|..+
T Consensus 314 -----------------------------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~ 358 (509)
T smart00350 314 -----------------------------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYD 358 (509)
T ss_pred -----------------------------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccC
Confidence 1234445555532 2111123467889999663
Q ss_pred ---------CCCccccCCCceeeEEEc-CCCCHHHHHHHHHHHhC
Q 009791 379 ---------RLDPALLRPGRMDMHIHM-SYCGPYGFRLLAANYLG 413 (525)
Q Consensus 379 ---------~LDpaLlRpGRfd~~I~~-~~p~~~~r~~L~~~~l~ 413 (525)
.|+|+|++ |||..+.+ ++|+.+...+|+++.+.
T Consensus 359 ~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 359 PKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 59999999 99997555 89999999999988654
No 182
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.79 E-value=2.5e-08 Score=110.71 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=89.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCC--ceEEEecCCc----CChhHHHHHHH-----------HhCCCeEEEEeccccc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKF--DVFDLQLGNV----TRDSDLRTLLL-----------STGNRSILVIEDIDCS 307 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~--~i~~l~~~~l----~~~~~L~~l~~-----------~~~~~sIL~iDdID~~ 307 (525)
.|+||.|+||||||+++++++..+.. +|+.+.++.. ...-.+...+. ...+..|||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998864 4776765321 11112222111 1134579999999987
Q ss_pred cCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC---------CCCCCCCceEEEEecCCCC
Q 009791 308 VDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG---------LWSSCGDERIIVFTTNHKE 378 (525)
Q Consensus 308 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg---------l~s~~~~~~ivI~TTN~~~ 378 (525)
- ..+.+.|++.|+. .....+....||+|+|..+
T Consensus 97 ~--------------------------------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e 138 (589)
T TIGR02031 97 D--------------------------------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE 138 (589)
T ss_pred C--------------------------------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc
Confidence 3 3466777777753 2222223467889999775
Q ss_pred ---CCCccccCCCceeeEEEcCCC-CHHHHHHHHHHHh
Q 009791 379 ---RLDPALLRPGRMDMHIHMSYC-GPYGFRLLAANYL 412 (525)
Q Consensus 379 ---~LDpaLlRpGRfd~~I~~~~p-~~~~r~~L~~~~l 412 (525)
.|+++|+. ||+.+|.+.++ ..++|.+|++.++
T Consensus 139 ~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 139 GGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred ccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 79999999 99999999865 5566889888766
No 183
>PRK04132 replication factor C small subunit; Provisional
Probab=98.78 E-value=8.9e-08 Score=108.96 Aligned_cols=122 Identities=10% Similarity=0.091 Sum_probs=96.5
Q ss_pred eeEeC--CCCCcHHHHHHHHHHHc-----CCceEEEecCCcCChhHHHHHHHHhC--------CCeEEEEeccccccCCC
Q 009791 247 YLLYG--PPGTGKSSLVAAMANYL-----KFDVFDLQLGNVTRDSDLRTLLLSTG--------NRSILVIEDIDCSVDLP 311 (525)
Q Consensus 247 ~LL~G--ppGTGKTsLa~AiA~~l-----~~~i~~l~~~~l~~~~~L~~l~~~~~--------~~sIL~iDdID~~~~~~ 311 (525)
.+..| |++.||||+|.|+|+++ +.+++.++.++..+...+++.+.... +.-|++|||+|.+-
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--- 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT--- 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC---
Confidence 45568 99999999999999998 56899999998766777887765431 12599999999872
Q ss_pred CCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCcee
Q 009791 312 DRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 391 (525)
Q Consensus 312 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd 391 (525)
....+.|+..|+... ....+|++||+++.+.|+|+. |+
T Consensus 644 -----------------------------------~~AQnALLk~lEep~----~~~~FILi~N~~~kIi~tIrS--RC- 681 (846)
T PRK04132 644 -----------------------------------QDAQQALRRTMEMFS----SNVRFILSCNYSSKIIEPIQS--RC- 681 (846)
T ss_pred -----------------------------------HHHHHHHHHHhhCCC----CCeEEEEEeCChhhCchHHhh--hc-
Confidence 224567888888642 346889999999999999998 75
Q ss_pred eEEEcCCCCHHHHHHHHHHHhC
Q 009791 392 MHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 392 ~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
..+.|+.|+.++....+...+.
T Consensus 682 ~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 682 AIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred eEEeCCCCCHHHHHHHHHHHHH
Confidence 6799999998888777776554
No 184
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=1.2e-07 Score=98.15 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=93.2
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCC------------------------ceEEEecC---CcCChhHHHHHHHHhC
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKF------------------------DVFDLQLG---NVTRDSDLRTLLLSTG 294 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------------------~i~~l~~~---~l~~~~~L~~l~~~~~ 294 (525)
..+.+|||+||+|+||+++|.++|..+-+ |++.+... ...+-+.+|++.....
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 34668999999999999999999998832 34444332 1234456676665543
Q ss_pred ------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCce
Q 009791 295 ------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDER 368 (525)
Q Consensus 295 ------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ 368 (525)
..-|++||++|.+- ....+.||..|+.- ++..
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~--------------------------------------~~AaNaLLKtLEEP----p~~t 139 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT--------------------------------------DAAANALLKTLEEP----PENT 139 (334)
T ss_pred hccccCCceEEEEcchHhhC--------------------------------------HHHHHHHHHHhcCC----CCCe
Confidence 34599999999873 34678899999873 4568
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHH
Q 009791 369 IIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAAN 410 (525)
Q Consensus 369 ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~ 410 (525)
++|++|++++.|.|.++. |.- .+.|+.|+.++..+.+..
T Consensus 140 ~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 140 WFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred EEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 999999999999999998 764 689999998887765543
No 185
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=2.2e-07 Score=95.65 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=92.6
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCC------------------------ceEEEec--CCcCChhHHHHHHHHhC--
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKF------------------------DVFDLQL--GNVTRDSDLRTLLLSTG-- 294 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~------------------------~i~~l~~--~~l~~~~~L~~l~~~~~-- 294 (525)
.+.+|||+||+|+||+++|.++|+.+-+ +++.+.. +....-+.+|++.....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 4669999999999999999999998843 3444432 11224456776655442
Q ss_pred ----CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEE
Q 009791 295 ----NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERII 370 (525)
Q Consensus 295 ----~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~iv 370 (525)
..-|++||++|.+- ....+.||..++.- +...++
T Consensus 103 ~~~g~~KV~iI~~a~~m~--------------------------------------~~AaNaLLKtLEEP----p~~~~f 140 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLT--------------------------------------EAAANALLKTLEEP----RPNTYF 140 (325)
T ss_pred cccCCceEEEEechhhhC--------------------------------------HHHHHHHHHHhcCC----CCCeEE
Confidence 23499999999773 34678899999874 456899
Q ss_pred EEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 371 VFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 371 I~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
|++|++++.|.|.++. |. ..+.|+.|+.++..+.+...
T Consensus 141 iL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 141 LLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9999999999999987 75 56899999998877666543
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=5.9e-07 Score=92.23 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=93.4
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcC-----------------------CceEEEecC---CcCChhHHHHHHHHhC-
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLK-----------------------FDVFDLQLG---NVTRDSDLRTLLLSTG- 294 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~-----------------------~~i~~l~~~---~l~~~~~L~~l~~~~~- 294 (525)
..+.+|||+||.|+||+++|.++|..+- -|++.+... ...+.+.+|.+.....
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 4466899999999999999999999873 245555442 1234456666544432
Q ss_pred -----CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceE
Q 009791 295 -----NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERI 369 (525)
Q Consensus 295 -----~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~i 369 (525)
..-|++||++|.+- ....+.||..++.- +...+
T Consensus 103 ~~~~~~~kV~iI~~ae~m~--------------------------------------~~AaNaLLKtLEEP----p~~t~ 140 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMN--------------------------------------ESASNALLKTLEEP----APNCL 140 (319)
T ss_pred CcccCCceEEEecchhhhC--------------------------------------HHHHHHHHHHhcCC----CCCeE
Confidence 23599999999773 34678899999974 45689
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHH
Q 009791 370 IVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAAN 410 (525)
Q Consensus 370 vI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~ 410 (525)
+|++|++++.|.|.++. |. ..+.|+.|+.++..+.+..
T Consensus 141 fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 141 FLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 99999999999999998 76 5789999999887766653
No 187
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.76 E-value=8.9e-08 Score=99.08 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=99.8
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChh
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDS 284 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~ 284 (525)
.|++++|....-+.+.+.+..... ....+||+|++||||+++|++|-... +.+++.++|..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 467888888888888887765542 24569999999999999999997665 46899999998753 3
Q ss_pred HHHHHH------------------HHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchh
Q 009791 285 DLRTLL------------------LSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQH 346 (525)
Q Consensus 285 ~L~~l~------------------~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
.+...+ ........|||||||.+-
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~-------------------------------------- 113 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP-------------------------------------- 113 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCC--------------------------------------
Confidence 333322 122346789999999873
Q ss_pred HHHHHHHhhhhcCCC-CCCC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEcCCCCH--HHHHHHHH
Q 009791 347 MLTLSGLLNFIDGLW-SSCG------DERIIVFTTNHK-------ERLDPALLRPGRM-DMHIHMSYCGP--YGFRLLAA 409 (525)
Q Consensus 347 ~~~ls~LLn~idgl~-s~~~------~~~ivI~TTN~~-------~~LDpaLlRpGRf-d~~I~~~~p~~--~~r~~L~~ 409 (525)
......|+++++.-. ...| -.+.||+||+.. ..+.+.|.. || ..+|++|.... +....|+.
T Consensus 114 ~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~ 191 (326)
T PRK11608 114 MLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAE 191 (326)
T ss_pred HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHH
Confidence 123445666664321 1111 135677777653 345566776 77 45677766543 34556666
Q ss_pred HHh
Q 009791 410 NYL 412 (525)
Q Consensus 410 ~~l 412 (525)
.|+
T Consensus 192 ~fl 194 (326)
T PRK11608 192 HFA 194 (326)
T ss_pred HHH
Confidence 665
No 188
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=4.9e-07 Score=92.89 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=88.6
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCC---------------------ceEEEe--cCCc-------CChhHHHHHHH
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKF---------------------DVFDLQ--LGNV-------TRDSDLRTLLL 291 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~---------------------~i~~l~--~~~l-------~~~~~L~~l~~ 291 (525)
..+.+|||+||+|+||+++|.++|+.+-+ |++.++ ...- ..-+.+|++..
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 44668999999999999999999987732 234342 1110 12345555554
Q ss_pred HhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCC
Q 009791 292 STG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCG 365 (525)
Q Consensus 292 ~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~ 365 (525)
... ..-|++||++|.+- ....+.||..|+.- +
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~--------------------------------------~~AaNaLLKtLEEP----p 141 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN--------------------------------------RAACNALLKTLEEP----S 141 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC--------------------------------------HHHHHHHHHHhhCC----C
Confidence 432 23488899888762 34678899998874 3
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHH
Q 009791 366 DERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAAN 410 (525)
Q Consensus 366 ~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~ 410 (525)
...++|++|++++.|.|.++. |. ..|.|+.|+.++....+..
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 457889999999999999998 76 5689999999876665543
No 189
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.73 E-value=1.2e-07 Score=103.24 Aligned_cols=71 Identities=31% Similarity=0.448 Sum_probs=56.2
Q ss_pred CCcceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 195 AIRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 195 ~~~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
...|-. ...|.+.++|+..+...+++...+...+. +....+-+||+||||||||++++.+|+++++.+..
T Consensus 6 ~~~W~~--ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 6 SEPWVE--KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cCccch--hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 345653 47899999999998888877777764332 34455678899999999999999999999988876
Q ss_pred E
Q 009791 275 L 275 (525)
Q Consensus 275 l 275 (525)
.
T Consensus 76 w 76 (519)
T PF03215_consen 76 W 76 (519)
T ss_pred e
Confidence 4
No 190
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.72 E-value=9.4e-08 Score=89.44 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=57.1
Q ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHHHHH
Q 009791 213 AMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDLRTL 289 (525)
Q Consensus 213 ~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L~~l 289 (525)
+|.....+.+++.+..... .+..+||+|++||||+.+|++|-+.. +.+|+.++|+.+..+.--..+
T Consensus 2 iG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4555555666666654432 34679999999999999999999876 478999999988543323334
Q ss_pred HH-----------------HhCCCeEEEEecccccc
Q 009791 290 LL-----------------STGNRSILVIEDIDCSV 308 (525)
Q Consensus 290 ~~-----------------~~~~~sIL~iDdID~~~ 308 (525)
|- ...+..+|||||||.+-
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~ 106 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP 106 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-
T ss_pred hccccccccccccccCCceeeccceEEeecchhhhH
Confidence 32 12356799999999883
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.72 E-value=7.1e-09 Score=97.94 Aligned_cols=64 Identities=30% Similarity=0.545 Sum_probs=47.3
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC-------ChhHHHHHHHHhCCCeEEEEecccc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT-------RDSDLRTLLLSTGNRSILVIEDIDC 306 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~-------~~~~L~~l~~~~~~~sIL~iDdID~ 306 (525)
-+.|++|+||||||||+|+.|||+++ |..++.++..++. .+....+.+....+..+|+|||+-.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccce
Confidence 35799999999999999999999887 7888888776652 2233455566666788999999863
No 192
>PRK06526 transposase; Provisional
Probab=98.71 E-value=1.4e-08 Score=101.24 Aligned_cols=64 Identities=22% Similarity=0.411 Sum_probs=47.0
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC-------ChhHHHHHHHHhCCCeEEEEeccccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT-------RDSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~-------~~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
+.+++|+||||||||+|+.||+.++ |..++...+.++. ....+.+.+.....+.+|+|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4689999999999999999999876 6666655554331 11234445555667889999999965
No 193
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.71 E-value=1.1e-07 Score=104.92 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=68.2
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCCh
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRD 283 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~ 283 (525)
.+|+.++|.....+.+++.+..... ....+||+|++||||+++|++|.... +.+++.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~- 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE- 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-
Confidence 4789999999888888887765542 24569999999999999999999875 57999999998843
Q ss_pred hHHHHHH-H-----------------HhCCCeEEEEeccccc
Q 009791 284 SDLRTLL-L-----------------STGNRSILVIEDIDCS 307 (525)
Q Consensus 284 ~~L~~l~-~-----------------~~~~~sIL~iDdID~~ 307 (525)
..+...+ - ...+..+|||||||.+
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L 302 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI 302 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC
Confidence 3333322 1 1234679999999987
No 194
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.68 E-value=1.3e-07 Score=97.86 Aligned_cols=149 Identities=20% Similarity=0.251 Sum_probs=90.7
Q ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHHHHH
Q 009791 213 AMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDLRTL 289 (525)
Q Consensus 213 ~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L~~l 289 (525)
+|.....+.+.+.+.... .....+||+|++||||+++|++|-... +.+++.++|+.+.. ..+...
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHH
Confidence 344444455555554432 224569999999999999999997665 47999999998743 233222
Q ss_pred H------------------HHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHH
Q 009791 290 L------------------LSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLS 351 (525)
Q Consensus 290 ~------------------~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 351 (525)
+ ........|||||||.+- .....
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~--------------------------------------~~~Q~ 111 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATAS--------------------------------------LLVQE 111 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCC--------------------------------------HHHHH
Confidence 2 222356899999999873 12344
Q ss_pred HHhhhhcCCC-CC------CCCceEEEEecCCC-------CCCCccccCCCcee-eEEEcCCCC--HHHHHHHHHHHhC
Q 009791 352 GLLNFIDGLW-SS------CGDERIIVFTTNHK-------ERLDPALLRPGRMD-MHIHMSYCG--PYGFRLLAANYLG 413 (525)
Q Consensus 352 ~LLn~idgl~-s~------~~~~~ivI~TTN~~-------~~LDpaLlRpGRfd-~~I~~~~p~--~~~r~~L~~~~l~ 413 (525)
.|+.+|+.-. .. ....+-||+|||.. ..+.+.|.. |+. ..|++|... .+....|+..|+.
T Consensus 112 ~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 112 KLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred HHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 4566654321 10 11235677777753 234566666 663 456666655 3455666666654
No 195
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.67 E-value=1.8e-07 Score=105.47 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=66.8
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCCh
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRD 283 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~ 283 (525)
.+|++++|.....+.+++.+..... ....+||+|++||||+++|++|.+.. +.+++.++|..+..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 3688898888777777777665443 23469999999999999999998876 469999999998543
Q ss_pred hHHHHHHHH--------------hCCCeEEEEeccccc
Q 009791 284 SDLRTLLLS--------------TGNRSILVIEDIDCS 307 (525)
Q Consensus 284 ~~L~~l~~~--------------~~~~sIL~iDdID~~ 307 (525)
.-..++|-. ......|||||||.+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l 428 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL 428 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC
Confidence 222334321 235679999999987
No 196
>PRK06921 hypothetical protein; Provisional
Probab=98.67 E-value=1.1e-07 Score=95.44 Aligned_cols=63 Identities=30% Similarity=0.355 Sum_probs=45.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecCCcCCh-----hHHHHHHHHhCCCeEEEEecccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLGNVTRD-----SDLRTLLLSTGNRSILVIEDIDC 306 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~~l~~~-----~~L~~l~~~~~~~sIL~iDdID~ 306 (525)
..+++|+||||||||+|+.|||+++ +..++.+...++... ..+...+....+..+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 5689999999999999999999987 566777765443211 12223344456778999999964
No 197
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.65 E-value=5.4e-07 Score=90.13 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=87.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCC-ceEEEec--CCcC-----------------C--h----hHHHHHHHH---hCCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKF-DVFDLQL--GNVT-----------------R--D----SDLRTLLLS---TGNR 296 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~-~i~~l~~--~~l~-----------------~--~----~~L~~l~~~---~~~~ 296 (525)
-++|+||+|+|||++++.+++.+.. .+..... .... . . ..+...+.. ...+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999999863 2222111 1110 0 0 112222211 2467
Q ss_pred eEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCC
Q 009791 297 SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNH 376 (525)
Q Consensus 297 sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~ 376 (525)
.||+|||+|.+.. .....+..|.+.... + +..+.||++. .
T Consensus 125 ~vliiDe~~~l~~-----------------------------------~~~~~l~~l~~~~~~--~--~~~~~vvl~g-~ 164 (269)
T TIGR03015 125 ALLVVDEAQNLTP-----------------------------------ELLEELRMLSNFQTD--N--AKLLQIFLVG-Q 164 (269)
T ss_pred eEEEEECcccCCH-----------------------------------HHHHHHHHHhCcccC--C--CCeEEEEEcC-C
Confidence 8999999997621 112233334333221 1 1122333333 3
Q ss_pred CC---CC-Cc---cccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCC---CcccHHHHHHHHhhcCCCHHHHHHH
Q 009791 377 KE---RL-DP---ALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDC---EHKLVAEIETLLKTINITPAQVAEQ 442 (525)
Q Consensus 377 ~~---~L-Dp---aLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~---~~~~~~~i~~l~~~~~~tpadi~~~ 442 (525)
++ .+ +| .+.+ |+...++++..+.++...++...+...+. ..-..+.++.+.+.++-.|..|..+
T Consensus 165 ~~~~~~l~~~~~~~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l 238 (269)
T TIGR03015 165 PEFRETLQSPQLQQLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINIL 238 (269)
T ss_pred HHHHHHHcCchhHHHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHH
Confidence 22 22 12 3555 88889999999999999988877753221 1223456677777776667666554
No 198
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=1.4e-07 Score=97.30 Aligned_cols=123 Identities=11% Similarity=0.176 Sum_probs=88.9
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcC-------------------------CceEEEecCC----------cCChhHH
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLK-------------------------FDVFDLQLGN----------VTRDSDL 286 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~-------------------------~~i~~l~~~~----------l~~~~~L 286 (525)
..+.+|||+||+|+|||++|.++|+.+. -+++.++... ..+-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 4466899999999999999999999873 3455665421 1234566
Q ss_pred HHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC
Q 009791 287 RTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL 360 (525)
Q Consensus 287 ~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl 360 (525)
|++...+. ..-|++||++|.+- ....+.|+..|+..
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------------------------------~~a~naLLk~LEep 140 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN--------------------------------------LQAANSLLKVLEEP 140 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC--------------------------------------HHHHHHHHHHHHhC
Confidence 76665543 34588999999762 23556678877775
Q ss_pred CCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHH
Q 009791 361 WSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAA 409 (525)
Q Consensus 361 ~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~ 409 (525)
. ....+|++|++++.+.|.+.+ |. ..+.|+.|+.++..+.+.
T Consensus 141 ~----~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 141 P----PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred c----CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence 2 236678899999999999887 65 678999999988665554
No 199
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1e-07 Score=98.56 Aligned_cols=65 Identities=26% Similarity=0.434 Sum_probs=56.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC--------hhHHHHHHHHhC------CCeEEEEecccccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR--------DSDLRTLLLSTG------NRSILVIEDIDCSV 308 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~--------~~~L~~l~~~~~------~~sIL~iDdID~~~ 308 (525)
+..+||.||.|+|||.|++.+|..++.||...||+.+.. ++-+.+++..+. +..|+||||+|.+.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 347999999999999999999999999999999999842 356778887663 78999999999985
No 200
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.63 E-value=1.4e-07 Score=97.48 Aligned_cols=63 Identities=27% Similarity=0.386 Sum_probs=47.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC---------hhHHHHHHHHhCCCeEEEEeccccc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR---------DSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~---------~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
.+++||||||||||+|+.|||+++ |..++.++..++.. .......+......-+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence 789999999999999999999997 77888877665421 1122222455556789999999854
No 201
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.60 E-value=2e-07 Score=97.80 Aligned_cols=163 Identities=17% Similarity=0.223 Sum_probs=93.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC-----CceEEEecC
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-----FDVFDLQLG 278 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-----~~i~~l~~~ 278 (525)
.+.-+|++++.-+.-... .......-. ..|. ...-++||||.|.|||+|++|++++.. ..++++...
T Consensus 81 ~~~ytFdnFv~g~~N~~A-~aa~~~va~------~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLA-YAAAKAVAE------NPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCchhheeeCCchHHH-HHHHHHHHh------ccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 444589997654443221 112222221 1222 345689999999999999999999883 233443322
Q ss_pred CcCC-------hhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHH
Q 009791 279 NVTR-------DSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLS 351 (525)
Q Consensus 279 ~l~~-------~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 351 (525)
.... +..+. -|.+.-+--+++||||+.+.+ . ..+..
T Consensus 153 ~f~~~~v~a~~~~~~~-~Fk~~y~~dlllIDDiq~l~g--------------------------------k----~~~qe 195 (408)
T COG0593 153 DFTNDFVKALRDNEME-KFKEKYSLDLLLIDDIQFLAG--------------------------------K----ERTQE 195 (408)
T ss_pred HHHHHHHHHHHhhhHH-HHHHhhccCeeeechHhHhcC--------------------------------C----hhHHH
Confidence 2110 01111 122222455999999998853 0 11233
Q ss_pred HHhhhhcCCCCCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 352 GLLNFIDGLWSSCGDERIIVFTTNHKER---LDPALLRPGRMD--MHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 352 ~LLn~idgl~s~~~~~~ivI~TTN~~~~---LDpaLlRpGRfd--~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
.|.+.+..+... +..||+.+...|.. +.|.|.. ||. ..+.+..|+.+.|..++.......
T Consensus 196 efFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 196 EFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred HHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 444444444433 22455444455554 4588887 654 567889999999999999865544
No 202
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.60 E-value=1.2e-07 Score=95.58 Aligned_cols=137 Identities=23% Similarity=0.429 Sum_probs=79.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCc---eEEEecCCcCChhHHHHHHHHh-------------CCCeEEEEeccccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFD---VFDLQLGNVTRDSDLRTLLLST-------------GNRSILVIEDIDCS 307 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~---i~~l~~~~l~~~~~L~~l~~~~-------------~~~sIL~iDdID~~ 307 (525)
.+.+||+||+|||||++++..-..+.-+ +..+.++...+...+.+.+... .+++|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 5789999999999999999877766533 3346666655555555544322 14579999999954
Q ss_pred cCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCC------CceEEEEecCCC---C
Q 009791 308 VDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCG------DERIIVFTTNHK---E 378 (525)
Q Consensus 308 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~------~~~ivI~TTN~~---~ 378 (525)
-. +. -+ ....-..+.++++. .|.+.... +.+.+|+++|.. .
T Consensus 113 ~~--d~--yg-------------------------tq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~ 162 (272)
T PF12775_consen 113 QP--DK--YG-------------------------TQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRN 162 (272)
T ss_dssp -----T--TS---------------------------HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--
T ss_pred CC--CC--CC-------------------------CcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCC
Confidence 21 11 00 01112233333321 13333211 246777887753 2
Q ss_pred CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 379 RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 379 ~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
.+++.|+| .| ..+.+++|+.+....|+..++.
T Consensus 163 ~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 163 PISPRFLR--HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred CCChHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence 47888988 77 4789999999998888887764
No 203
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.55 E-value=3.2e-07 Score=91.54 Aligned_cols=91 Identities=27% Similarity=0.502 Sum_probs=60.3
Q ss_pred ccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC---
Q 009791 209 FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR--- 282 (525)
Q Consensus 209 f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~--- 282 (525)
+.++-+.+...+.....+..+.. +|. -+.+++||||||||||+|+.|||+++ |..++.+...++..
T Consensus 78 ~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 78 EFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 34444555555555444444432 232 46789999999999999999999998 67788887776631
Q ss_pred ----hhHHH-HHHHHhCCCeEEEEeccccc
Q 009791 283 ----DSDLR-TLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 283 ----~~~L~-~l~~~~~~~sIL~iDdID~~ 307 (525)
+.... ++.....+.-+|+||||=..
T Consensus 150 ~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 150 AAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 11222 23333677889999998754
No 204
>PRK09183 transposase/IS protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=94.78 Aligned_cols=64 Identities=23% Similarity=0.351 Sum_probs=46.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC-------ChhHHHHHHHH-hCCCeEEEEeccccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT-------RDSDLRTLLLS-TGNRSILVIEDIDCS 307 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~-------~~~~L~~l~~~-~~~~sIL~iDdID~~ 307 (525)
...++|+||||||||+|+.|+|+.+ |..+..+++.++. ....+...+.. ...+.+|+|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4579999999999999999998764 6777777655442 11224445544 457789999999854
No 205
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.54 E-value=1.2e-06 Score=96.27 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=65.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT 281 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~ 281 (525)
...+|++++|....-+.+++.+..... ....+||+|++||||+++|+++-... +.+++.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 345899999988877777776654432 23459999999999999999986554 4689999999875
Q ss_pred ChhHHHH-HHH-----------------HhCCCeEEEEeccccc
Q 009791 282 RDSDLRT-LLL-----------------STGNRSILVIEDIDCS 307 (525)
Q Consensus 282 ~~~~L~~-l~~-----------------~~~~~sIL~iDdID~~ 307 (525)
. ..+.. +|- +......|||||||.+
T Consensus 268 ~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L 310 (520)
T PRK10820 268 D-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEM 310 (520)
T ss_pred H-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhC
Confidence 3 22322 221 1234678999999987
No 206
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.52 E-value=1.2e-06 Score=91.15 Aligned_cols=154 Identities=23% Similarity=0.280 Sum_probs=103.0
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC-------Cc--------
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-------FD-------- 271 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-------~~-------- 271 (525)
-.|.-+.|++.+|..|.-... .|--.|+|+-|+.|||||++++|||..|. ++
T Consensus 14 ~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 467888999999987765432 12235899999999999999999999883 21
Q ss_pred -------------------------eEEEecCCc----CChhHHHHHHHH-----------hCCCeEEEEeccccccCCC
Q 009791 272 -------------------------VFDLQLGNV----TRDSDLRTLLLS-----------TGNRSILVIEDIDCSVDLP 311 (525)
Q Consensus 272 -------------------------i~~l~~~~l----~~~~~L~~l~~~-----------~~~~sIL~iDdID~~~~~~ 311 (525)
++.+.++.. ...-++.+.+.. ..++.||+|||+..+-
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~--- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD--- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc---
Confidence 111111111 011123333321 2367899999998763
Q ss_pred CCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhh---------cCCCCCCCCceEEEEecCCC-CCCC
Q 009791 312 DRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFI---------DGLWSSCGDERIIVFTTNHK-ERLD 381 (525)
Q Consensus 312 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~i---------dgl~s~~~~~~ivI~TTN~~-~~LD 381 (525)
......||+.+ +|+.-..+-.+++|+|+|.- ..|-
T Consensus 158 -----------------------------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLr 202 (423)
T COG1239 158 -----------------------------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELR 202 (423)
T ss_pred -----------------------------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccc
Confidence 23455556554 45544555568999999965 5788
Q ss_pred ccccCCCceeeEEEcCCCC-HHHHHHHHHHHhC
Q 009791 382 PALLRPGRMDMHIHMSYCG-PYGFRLLAANYLG 413 (525)
Q Consensus 382 paLlRpGRfd~~I~~~~p~-~~~r~~L~~~~l~ 413 (525)
|-|+. ||..+|.+.+|. .++|.++.++-+.
T Consensus 203 pqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 203 PQLLD--RFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred hhhHh--hhcceeeccCCCCHHHHHHHHHHHHH
Confidence 99999 999999998885 4667777776544
No 207
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.51 E-value=1.1e-06 Score=85.18 Aligned_cols=159 Identities=25% Similarity=0.306 Sum_probs=87.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCC---ceEEEecCCcCC--------------------------------------
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKF---DVFDLQLGNVTR-------------------------------------- 282 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~---~i~~l~~~~l~~-------------------------------------- 282 (525)
.+.++||||.|+|||+|++.+.+.+.- ..+.++......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 467999999999999999999999832 111111111100
Q ss_pred ---hhHHHHHHHHh---CCCeEEEEecccccc-CCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 283 ---DSDLRTLLLST---GNRSILVIEDIDCSV-DLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 283 ---~~~L~~l~~~~---~~~sIL~iDdID~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
...+..++... ..+.||+|||+|.+. .. ......+..|.+
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~---------------------------------~~~~~~~~~l~~ 146 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS---------------------------------EEDKDFLKSLRS 146 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT---------------------------------TTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc---------------------------------cchHHHHHHHHH
Confidence 11222222222 245999999999885 21 112345667777
Q ss_pred hhcCCCCCCCCceEEEEecCCC----C--CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCC-cccHHHHHHH
Q 009791 356 FIDGLWSSCGDERIIVFTTNHK----E--RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCE-HKLVAEIETL 428 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~----~--~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~-~~~~~~i~~l 428 (525)
.++..... ..+.+|+++... + .-.+.+. +|+.. +++++.+.++..+++...+... .. .....+++.+
T Consensus 147 ~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i 220 (234)
T PF01637_consen 147 LLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEI 220 (234)
T ss_dssp HHHH------TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHH
T ss_pred HHhhcccc--CCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHH
Confidence 77774443 334444444332 1 1123343 38877 9999999999999999876433 01 2356777888
Q ss_pred HhhcCCCHHHHHH
Q 009791 429 LKTINITPAQVAE 441 (525)
Q Consensus 429 ~~~~~~tpadi~~ 441 (525)
..-+|-.|..|..
T Consensus 221 ~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 221 YSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHTT-HHHHHH
T ss_pred HHHhCCCHHHHhc
Confidence 8888888887764
No 208
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.50 E-value=2e-07 Score=84.13 Aligned_cols=74 Identities=24% Similarity=0.348 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC---ceEEEecCCcCChhHHHHHHHHh
Q 009791 217 DLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF---DVFDLQLGNVTRDSDLRTLLLST 293 (525)
Q Consensus 217 ~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~---~i~~l~~~~l~~~~~L~~l~~~~ 293 (525)
..-+.+.+.+..+.. ....+||+|+|||||+++|++|....+. +++.++|.... .+++..
T Consensus 5 ~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l~~- 67 (138)
T PF14532_consen 5 PAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELLEQ- 67 (138)
T ss_dssp HHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHHHH-
T ss_pred HHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHHHH-
Confidence 344556665554432 2456999999999999999999988754 55556666543 334444
Q ss_pred CCCeEEEEeccccc
Q 009791 294 GNRSILVIEDIDCS 307 (525)
Q Consensus 294 ~~~sIL~iDdID~~ 307 (525)
.....|+|+|||.+
T Consensus 68 a~~gtL~l~~i~~L 81 (138)
T PF14532_consen 68 AKGGTLYLKNIDRL 81 (138)
T ss_dssp CTTSEEEEECGCCS
T ss_pred cCCCEEEECChHHC
Confidence 47889999999988
No 209
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=6.2e-07 Score=79.87 Aligned_cols=63 Identities=22% Similarity=0.413 Sum_probs=47.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC--CceEEEecCCcCChh----HHHHHHHHh--CCCeEEEEeccccc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK--FDVFDLQLGNVTRDS----DLRTLLLST--GNRSILVIEDIDCS 307 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~--~~i~~l~~~~l~~~~----~L~~l~~~~--~~~sIL~iDdID~~ 307 (525)
+-++|+||.|||||++++.++..+. .+++.+++.+..... ++.+.+.+. ..+.+||||||..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999887 888888887653221 133444433 36799999999966
No 210
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.49 E-value=4.7e-07 Score=98.47 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=35.5
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..|+++.|....++.+.-.+ .....++|+||||||||+++++|+..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 47899999877765443211 223569999999999999999999755
No 211
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.47 E-value=7.7e-07 Score=97.44 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=68.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT 281 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~ 281 (525)
...+|++++|.....+.+.+.+..+.. ....+||+|++||||+++|++|-+.. +.+++.++|..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~-----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYAR-----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 335799999998888888877765433 23579999999999999999998764 5799999999885
Q ss_pred ChhHHHHHHH-------------------HhCCCeEEEEeccccc
Q 009791 282 RDSDLRTLLL-------------------STGNRSILVIEDIDCS 307 (525)
Q Consensus 282 ~~~~L~~l~~-------------------~~~~~sIL~iDdID~~ 307 (525)
. ..+...+. +......|||||||.+
T Consensus 276 e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 319 (526)
T TIGR02329 276 E-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM 319 (526)
T ss_pred h-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhC
Confidence 3 22332221 1234678999999987
No 212
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.47 E-value=9.2e-07 Score=96.88 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=67.3
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHH-----------cCCceEEE
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANY-----------LKFDVFDL 275 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~-----------l~~~i~~l 275 (525)
.+|++++|.....+.+.+.+..+-. ....+||+|++||||+++|++|-+. -+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~-----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR-----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 4689999998888888877765433 2357999999999999999999887 46799999
Q ss_pred ecCCcCChhHHHHHH-------------------HHhCCCeEEEEeccccc
Q 009791 276 QLGNVTRDSDLRTLL-------------------LSTGNRSILVIEDIDCS 307 (525)
Q Consensus 276 ~~~~l~~~~~L~~l~-------------------~~~~~~sIL~iDdID~~ 307 (525)
+|+.+.. ..+...+ .+......||||||+.+
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 334 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 334 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhC
Confidence 9998853 2232222 11234578999999987
No 213
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.46 E-value=1e-06 Score=84.72 Aligned_cols=95 Identities=19% Similarity=0.369 Sum_probs=63.7
Q ss_pred ccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-C----CceEEE
Q 009791 201 VKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-K----FDVFDL 275 (525)
Q Consensus 201 v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-~----~~i~~l 275 (525)
|..+.|.-+.+++|.++..+.+.- +.+ -| +. ..+++.||||||||+-+.++|++| | --+..+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~v----ia~-------~g-nm-P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSV----IAK-------EG-NM-PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHH----HHH-------cC-CC-CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 456889999999999887655432 221 12 11 258999999999999999999998 3 234556
Q ss_pred ecCCcCChhHHH---HHHHHhC------CCeEEEEecccccc
Q 009791 276 QLGNVTRDSDLR---TLLLSTG------NRSILVIEDIDCSV 308 (525)
Q Consensus 276 ~~~~l~~~~~L~---~l~~~~~------~~sIL~iDdID~~~ 308 (525)
+.++-..-.-+| +.|.+.+ +.-||++||.|.+-
T Consensus 85 NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 85 NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred cCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 666544333333 3343332 23599999999773
No 214
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.45 E-value=5.3e-07 Score=97.79 Aligned_cols=120 Identities=23% Similarity=0.306 Sum_probs=77.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCce--EEEecCCcCC-------h--------------hHHHHH----------H
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDV--FDLQLGNVTR-------D--------------SDLRTL----------L 290 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i--~~l~~~~l~~-------~--------------~~L~~l----------~ 290 (525)
...++|+||||||||+|++.|+..+.-.- ..++.+.+.+ . .....+ .
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 45699999999999999999998763210 1122222110 0 001111 1
Q ss_pred HHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC-CC--C-----
Q 009791 291 LSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG-LW--S----- 362 (525)
Q Consensus 291 ~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg-l~--s----- 362 (525)
.......+||+|||+.+- ..++..|++.|+. .. +
T Consensus 290 l~~A~gGvLfLDEi~e~~--------------------------------------~~~~~~L~~~LE~g~v~I~r~g~~ 331 (506)
T PRK09862 290 ISLAHNGVLFLDELPEFE--------------------------------------RRTLDALREPIESGQIHLSRTRAK 331 (506)
T ss_pred hhhccCCEEecCCchhCC--------------------------------------HHHHHHHHHHHHcCcEEEecCCcc
Confidence 223456899999998651 3466677776632 21 1
Q ss_pred -CCCCceEEEEecCCCC---------------------CCCccccCCCceeeEEEcCCCCHHH
Q 009791 363 -SCGDERIIVFTTNHKE---------------------RLDPALLRPGRMDMHIHMSYCGPYG 403 (525)
Q Consensus 363 -~~~~~~ivI~TTN~~~---------------------~LDpaLlRpGRfd~~I~~~~p~~~~ 403 (525)
..+..+.+|+|+|... +|.++++. |||.++.+++++.+.
T Consensus 332 ~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~ 392 (506)
T PRK09862 332 ITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGI 392 (506)
T ss_pred eeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHH
Confidence 1123578899999653 57789999 999999999998763
No 215
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.44 E-value=3.2e-07 Score=79.24 Aligned_cols=61 Identities=23% Similarity=0.361 Sum_probs=39.0
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhCCCeEEEEeccccc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
+.||||||+|||++++.+|..+.-.+-......+.....-.+.+..-....|+++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5799999999999999999887533311111111111112334455556789999999865
No 216
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.44 E-value=1.3e-06 Score=99.38 Aligned_cols=90 Identities=14% Similarity=0.297 Sum_probs=67.6
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR 282 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~ 282 (525)
..+|++++|.....+.+.+.+..+.. ....+||+|++|||||++|++|.... +.+++.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 35789999999888888888875432 23579999999999999999998765 57999999998742
Q ss_pred hhHHHH-HH-----------------HHhCCCeEEEEeccccc
Q 009791 283 DSDLRT-LL-----------------LSTGNRSILVIEDIDCS 307 (525)
Q Consensus 283 ~~~L~~-l~-----------------~~~~~~sIL~iDdID~~ 307 (525)
. .+.. +| ......++|||||||.+
T Consensus 441 ~-~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L 482 (686)
T PRK15429 441 G-LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 482 (686)
T ss_pred h-HhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC
Confidence 1 1111 11 12345689999999987
No 217
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.43 E-value=4.6e-06 Score=82.03 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=55.8
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhC-CCeEEEEeccccc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTG-NRSILVIEDIDCS 307 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~-~~sIL~iDdID~~ 307 (525)
...|-.++||+|||||..++++|..+|..++..+|++-.+-..+.++|..+. ..+.+++||++.+
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl 96 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRL 96 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCS
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhh
Confidence 3467789999999999999999999999999999999999999999998765 5899999999987
No 218
>PHA02624 large T antigen; Provisional
Probab=98.42 E-value=1.1e-06 Score=95.57 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=82.1
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNEN 319 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~ 319 (525)
|+|.++.+|||||||||||+++++|++.++-.++.++... +.+.-.|.-+...-+.+|||+-.-+-. +. .-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~~-~~-~L--- 497 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPAD-NK-DL--- 497 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeeccccccc-cc-cC---
Confidence 6788899999999999999999999999976666665332 344555555666789999998743210 00 00
Q ss_pred CchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCC-----c-----eEEEEecCCCCCCCccccCCCc
Q 009791 320 NADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGD-----E-----RIIVFTTNHKERLDPALLRPGR 389 (525)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~-----~-----~ivI~TTN~~~~LDpaLlRpGR 389 (525)
..+..-..+..|-|.+||-..-+-+ . --.|.|||. ..||..+.- |
T Consensus 498 ----------------------p~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--R 552 (647)
T PHA02624 498 ----------------------PSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--R 552 (647)
T ss_pred ----------------------CcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--H
Confidence 0011122355677888886211100 0 135678886 457888877 9
Q ss_pred eeeEEEcCC
Q 009791 390 MDMHIHMSY 398 (525)
Q Consensus 390 fd~~I~~~~ 398 (525)
|-.++.|..
T Consensus 553 f~~~~~F~~ 561 (647)
T PHA02624 553 FAKVLDFKP 561 (647)
T ss_pred HHHhccccc
Confidence 998888863
No 219
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.39 E-value=3.8e-06 Score=92.17 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=66.3
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChh
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDS 284 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~ 284 (525)
.+++++|.....+.+.+.+..... ....+||+|++||||+++|++|.... +.+++.++|..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 568899988888888887765432 24579999999999999999998875 57999999998853 2
Q ss_pred HHHH-HHH-----------------HhCCCeEEEEeccccc
Q 009791 285 DLRT-LLL-----------------STGNRSILVIEDIDCS 307 (525)
Q Consensus 285 ~L~~-l~~-----------------~~~~~sIL~iDdID~~ 307 (525)
.+.. +|- .......|||||||.+
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L 293 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGEL 293 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhC
Confidence 2222 221 1234678999999987
No 220
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.6e-05 Score=78.95 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=79.8
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCC----------------------ceEEEecCC-cCChhHHHHHHHHhC----
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKF----------------------DVFDLQLGN-VTRDSDLRTLLLSTG---- 294 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~----------------------~i~~l~~~~-l~~~~~L~~l~~~~~---- 294 (525)
+.+.++||+||+|+||..+|.++|..+-+ |++.+.... ....++++++.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 46779999999999999999999988732 233322111 122344555544332
Q ss_pred ---CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEE
Q 009791 295 ---NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIV 371 (525)
Q Consensus 295 ---~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI 371 (525)
..-|++|+++|.+- ....+.||..++.- +...++|
T Consensus 85 e~~~~KV~II~~ae~m~--------------------------------------~~AaNaLLK~LEEP----p~~t~fi 122 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN--------------------------------------KQSANSLLKLIEEP----PKNTYGI 122 (261)
T ss_pred hcCCCEEEEeccHhhhC--------------------------------------HHHHHHHHHhhcCC----CCCeEEE
Confidence 24589999999762 34678899999874 4568999
Q ss_pred EecCCCCCCCccccCCCceeeEEEcCCC
Q 009791 372 FTTNHKERLDPALLRPGRMDMHIHMSYC 399 (525)
Q Consensus 372 ~TTN~~~~LDpaLlRpGRfd~~I~~~~p 399 (525)
++|+.++.+.|.++. |. ..+.++.+
T Consensus 123 Lit~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 123 FTTRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred EEECChHhCchHhhh--he-eeeecCCh
Confidence 999999999999998 75 34666655
No 221
>PF05729 NACHT: NACHT domain
Probab=98.35 E-value=3.5e-06 Score=77.16 Aligned_cols=133 Identities=19% Similarity=0.283 Sum_probs=73.1
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCC---------ceEEEecCCcCChh---HHHHHH------------------HHhC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKF---------DVFDLQLGNVTRDS---DLRTLL------------------LSTG 294 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~---------~i~~l~~~~l~~~~---~L~~l~------------------~~~~ 294 (525)
|-++|+|+||+|||++++.++..+.. -++.+.+.+..... .+...+ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35789999999999999999988721 12334444332111 222222 2234
Q ss_pred CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEec
Q 009791 295 NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTT 374 (525)
Q Consensus 295 ~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TT 374 (525)
.+.+|+||.+|.+..... ..........|.+++..-. .+.-.++|.+.
T Consensus 81 ~~~llilDglDE~~~~~~------------------------------~~~~~~~~~~l~~l~~~~~--~~~~~liit~r 128 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQ------------------------------SQERQRLLDLLSQLLPQAL--PPGVKLIITSR 128 (166)
T ss_pred CceEEEEechHhcccchh------------------------------hhHHHHHHHHHHHHhhhcc--CCCCeEEEEEc
Confidence 678999999998743000 0001112222333333310 11223444333
Q ss_pred CCC-CCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 375 NHK-ERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 375 N~~-~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
.+. ..+...+.. ...+++...+.++.+++++.|+.
T Consensus 129 ~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 129 PRAFPDLRRRLKQ----AQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred CChHHHHHHhcCC----CcEEEECCCCHHHHHHHHHHHhh
Confidence 322 223333333 25788999999999999999885
No 222
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.31 E-value=3.4e-06 Score=88.46 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=104.0
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHH----cCCceEEEecCCcC
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANY----LKFDVFDLQLGNVT 281 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~----l~~~i~~l~~~~l~ 281 (525)
...+++|+|....-+++++.+..+ . +....+|++|++||||+.+|++|... .+.+++.++|+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~-------a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY-------A----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh-------C----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 346899999988888888877652 1 23456999999999999999999743 36799999999998
Q ss_pred ChhHHHHHHHH-----------------hCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCc
Q 009791 282 RDSDLRTLLLS-----------------TGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKG 344 (525)
Q Consensus 282 ~~~~L~~l~~~-----------------~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (525)
.+-...++|-- ..+..+||+|||..+-.
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~----------------------------------- 187 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP----------------------------------- 187 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH-----------------------------------
Confidence 77666666531 12457999999997732
Q ss_pred hhHHHHHHHhhhhcCC-C----C--CCCCceEEEEecC-CC-CCCCc--cccCCCceeeEEEcCCCCH--HHHHHHHHHH
Q 009791 345 QHMLTLSGLLNFIDGL-W----S--SCGDERIIVFTTN-HK-ERLDP--ALLRPGRMDMHIHMSYCGP--YGFRLLAANY 411 (525)
Q Consensus 345 ~~~~~ls~LLn~idgl-~----s--~~~~~~ivI~TTN-~~-~~LDp--aLlRpGRfd~~I~~~~p~~--~~r~~L~~~~ 411 (525)
.....||.+||.. + + .....|.+|++|| ++ +.+-. .|.| -|+...|++|.... +++..|+..|
T Consensus 188 ---~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~F 263 (403)
T COG1221 188 ---EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHF 263 (403)
T ss_pred ---hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHH
Confidence 1234467777641 1 1 1123466666666 32 22222 3432 16777787776543 4455666666
Q ss_pred hC
Q 009791 412 LG 413 (525)
Q Consensus 412 l~ 413 (525)
+.
T Consensus 264 l~ 265 (403)
T COG1221 264 LK 265 (403)
T ss_pred HH
Confidence 64
No 223
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.31 E-value=1.9e-06 Score=76.17 Aligned_cols=64 Identities=31% Similarity=0.542 Sum_probs=43.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc--------CCceEEEecCCcCCh---------------------hHHHHHHHHh-
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL--------KFDVFDLQLGNVTRD---------------------SDLRTLLLST- 293 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l--------~~~i~~l~~~~l~~~---------------------~~L~~l~~~~- 293 (525)
.+.++++||||+|||++++.++..+ +.+++.+++....+. .++.+.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568899999999999999999988 788888877654322 2222222221
Q ss_pred --CCCeEEEEeccccc
Q 009791 294 --GNRSILVIEDIDCS 307 (525)
Q Consensus 294 --~~~sIL~iDdID~~ 307 (525)
....+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 12359999999985
No 224
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=4.8e-06 Score=94.64 Aligned_cols=122 Identities=20% Similarity=0.280 Sum_probs=80.7
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCC-CcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC-----
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA-WKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT----- 281 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~-~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~----- 281 (525)
.|+|+++....|-+.+..... .++.+ +.-.+||.||.|+|||-||+|+|.++ .-.++.+|+++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 456666666666666553322 12222 44569999999999999999999998 4578899998631
Q ss_pred --------ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHH
Q 009791 282 --------RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLS 351 (525)
Q Consensus 282 --------~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 351 (525)
..+..-.+..... .-|||+|||||..= ...++
T Consensus 637 igsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh--------------------------------------~~v~n 678 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH--------------------------------------PDVLN 678 (898)
T ss_pred cCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC--------------------------------------HHHHH
Confidence 1233334444443 35999999999641 34667
Q ss_pred HHhhhhcCCCCCCC-------CceEEEEecCC
Q 009791 352 GLLNFIDGLWSSCG-------DERIIVFTTNH 376 (525)
Q Consensus 352 ~LLn~idgl~s~~~-------~~~ivI~TTN~ 376 (525)
.|+..+|...-+.+ .+.|||+|+|.
T Consensus 679 ~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 679 ILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred HHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 78888875432222 24699999985
No 225
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.25 E-value=1.1e-05 Score=81.29 Aligned_cols=84 Identities=13% Similarity=0.276 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---------CCceEEEecCCcCChhHHHHHH
Q 009791 220 ATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---------KFDVFDLQLGNVTRDSDLRTLL 290 (525)
Q Consensus 220 ~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---------~~~i~~l~~~~l~~~~~L~~l~ 290 (525)
+++++.++..+..|. ..-..++||+|++|.|||++++..+... ..+++.+.+..-.++..+-..+
T Consensus 43 ~~~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 43 KEALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 346666776666542 2334589999999999999999999765 2567777765543332222111
Q ss_pred ------------------------HHhCCCeEEEEeccccccC
Q 009791 291 ------------------------LSTGNRSILVIEDIDCSVD 309 (525)
Q Consensus 291 ------------------------~~~~~~sIL~iDdID~~~~ 309 (525)
...-+.-+|+|||++.++.
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 1223567999999998764
No 226
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.24 E-value=2.5e-06 Score=89.29 Aligned_cols=100 Identities=20% Similarity=0.317 Sum_probs=62.4
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc-eEEEecCC-----------cC-ChhHHHHHHHHhCCCe-EEEEeccc
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD-VFDLQLGN-----------VT-RDSDLRTLLLSTGNRS-ILVIEDID 305 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~-i~~l~~~~-----------l~-~~~~L~~l~~~~~~~s-IL~iDdID 305 (525)
..+.++|++||||+|+|||+|.-...+.+... --.+.... +. ....+..+.....+.+ ||+|||+.
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQ 137 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeee
Confidence 35678999999999999999999998887431 00111000 01 1222333444444444 99999998
Q ss_pred cccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCC-CCC
Q 009791 306 CSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHK-ERL 380 (525)
Q Consensus 306 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~-~~L 380 (525)
.- +-.....+..|++.+=. .++++|+|+|++ +.|
T Consensus 138 V~-----------------------------------DiaDAmil~rLf~~l~~------~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 138 VT-----------------------------------DIADAMILKRLFEALFK------RGVVLVATSNRPPEDL 172 (362)
T ss_pred cc-----------------------------------chhHHHHHHHHHHHHHH------CCCEEEecCCCChHHH
Confidence 53 11235567777765532 348999999964 444
No 227
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=1.7e-05 Score=80.15 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=80.9
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCC----------------ceEEEecCC---cCChhHHHHHHHHhC------CC
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKF----------------DVFDLQLGN---VTRDSDLRTLLLSTG------NR 296 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~----------------~i~~l~~~~---l~~~~~L~~l~~~~~------~~ 296 (525)
..+.+|||+||+|+||+.+|.++|..+-+ |++.+.... ..+-..+|.+..... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 34668999999999999999999998843 344442221 123445565555443 23
Q ss_pred eEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCC
Q 009791 297 SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNH 376 (525)
Q Consensus 297 sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~ 376 (525)
-|++||++|.+- ....+.||..|+.- ++..++|+.|+.
T Consensus 97 kv~ii~~ad~mt--------------------------------------~~AaNaLLK~LEEP----p~~~~fiL~~~~ 134 (290)
T PRK05917 97 KIYIIHEADRMT--------------------------------------LDAISAFLKVLEDP----PQHGVIILTSAK 134 (290)
T ss_pred eEEEEechhhcC--------------------------------------HHHHHHHHHHhhcC----CCCeEEEEEeCC
Confidence 499999999773 34678899999874 456889999999
Q ss_pred CCCCCccccCCCceeeEEEcCCC
Q 009791 377 KERLDPALLRPGRMDMHIHMSYC 399 (525)
Q Consensus 377 ~~~LDpaLlRpGRfd~~I~~~~p 399 (525)
++.|.|.++. |. ..+.|+.+
T Consensus 135 ~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 135 PQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred hhhCcHHHHh--cc-eEEEccch
Confidence 9999999987 65 45666643
No 228
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.21 E-value=4.7e-06 Score=83.72 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=97.3
Q ss_pred cceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc-----
Q 009791 197 RWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD----- 271 (525)
Q Consensus 197 ~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~----- 271 (525)
.|. .-+.|..+++|++..+.-..+.+. .. ..+.| ..|+|||||||||+.+-|.|..+-.+
T Consensus 30 pwv--ekyrP~~l~dv~~~~ei~st~~~~----~~------~~~lP---h~L~YgPPGtGktsti~a~a~~ly~~~~~~~ 94 (360)
T KOG0990|consen 30 PWV--EKYRPPFLGIVIKQEPIWSTENRY----SG------MPGLP---HLLFYGPPGTGKTSTILANARDFYSPHPTTS 94 (360)
T ss_pred CCc--cCCCCchhhhHhcCCchhhHHHHh----cc------CCCCC---cccccCCCCCCCCCchhhhhhhhcCCCCchh
Confidence 454 457888999999987765555443 21 11222 89999999999999999999988542
Q ss_pred -eEEEecCCcC---ChhHHHHHHHHhC---------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccc
Q 009791 272 -VFDLQLGNVT---RDSDLRTLLLSTG---------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTD 338 (525)
Q Consensus 272 -i~~l~~~~l~---~~~~L~~l~~~~~---------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (525)
+..++.++-. ....-...|..+. ..-.+++||.|+..
T Consensus 95 m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT------------------------------ 144 (360)
T KOG0990|consen 95 MLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT------------------------------ 144 (360)
T ss_pred HHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh------------------------------
Confidence 1223333221 1223334444444 45689999999762
Q ss_pred cCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 339 FAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 339 ~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
....++|-..+..+. .+.-++.-+|++..+.|++.. |+.. +.+...+..+-.....+....
T Consensus 145 --------~~AQnALRRviek~t----~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 145 --------RDAQNALRRVIEKYT----ANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred --------HHHHHHHHHHHHHhc----cceEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhc
Confidence 112233334454442 234556889999999999987 6643 455555555555555555543
No 229
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.7e-06 Score=89.83 Aligned_cols=48 Identities=29% Similarity=0.451 Sum_probs=39.7
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
...|.||.|.+..|+.+.-.. +-..++||+||||||||+|++-|..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 458999999999998775432 235689999999999999999998766
No 230
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=6.9e-05 Score=76.01 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=83.8
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCC------------------------ceEEEecCC-cCChhHHHHHHHHhC--
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKF------------------------DVFDLQLGN-VTRDSDLRTLLLSTG-- 294 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------------------~i~~l~~~~-l~~~~~L~~l~~~~~-- 294 (525)
..+.+|||+|| +||+++|.++|..+-+ |++.+.... ...-+.+|.+.....
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 45678999996 6899999999987632 333333221 123456676655443
Q ss_pred ----CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEE
Q 009791 295 ----NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERII 370 (525)
Q Consensus 295 ----~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~iv 370 (525)
..-|++||++|.+- ....+.||..++.- +...++
T Consensus 100 p~~~~~kV~II~~ad~m~--------------------------------------~~AaNaLLKtLEEP----p~~t~~ 137 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH--------------------------------------VNAANSLLKVIEEP----QSEIYI 137 (290)
T ss_pred cccCCcEEEEeehhhhcC--------------------------------------HHHHHHHHHHhcCC----CCCeEE
Confidence 34699999999773 34678899999874 455889
Q ss_pred EEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHH
Q 009791 371 VFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAA 409 (525)
Q Consensus 371 I~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~ 409 (525)
|++|++++.|-|.++. |. .+|.|+. +.+...+++.
T Consensus 138 iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 138 FLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 9999999999999998 76 5688865 4554444443
No 231
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.19 E-value=6.2e-06 Score=93.95 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=77.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCc-------eEEEecCCcCC-hhHH-HHH-----HHHhCCCeEEEEeccccccCCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFD-------VFDLQLGNVTR-DSDL-RTL-----LLSTGNRSILVIEDIDCSVDLP 311 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~-------i~~l~~~~l~~-~~~L-~~l-----~~~~~~~sIL~iDdID~~~~~~ 311 (525)
.+||.|+||||||.+++++++..... ...+.++.... .... ... ........+++|||+|.+-
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms--- 570 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH--- 570 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC---
Confidence 59999999999999999999865433 33333332210 0000 000 0111346799999999762
Q ss_pred CCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC---------CCCCCCCceEEEEecCCCC----
Q 009791 312 DRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG---------LWSSCGDERIIVFTTNHKE---- 378 (525)
Q Consensus 312 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg---------l~s~~~~~~ivI~TTN~~~---- 378 (525)
....+.|+..|+. +...-....-||+|+|..+
T Consensus 571 -----------------------------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd 615 (915)
T PTZ00111 571 -----------------------------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYN 615 (915)
T ss_pred -----------------------------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccC
Confidence 1233445555532 2111123467889999752
Q ss_pred ---------CCCccccCCCceeeEE-EcCCCCHHHHHHHHHHHh
Q 009791 379 ---------RLDPALLRPGRMDMHI-HMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 379 ---------~LDpaLlRpGRfd~~I-~~~~p~~~~r~~L~~~~l 412 (525)
.|+|+|+. |||..+ -++.|+.+.=+.|+.+.+
T Consensus 616 ~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 616 KNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 46899999 999874 457888777666665543
No 232
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=3.6e-05 Score=78.54 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=89.4
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------ceEEEec-CCcCChhHHHHHHHHhC-------CCeEEE
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKF-------------DVFDLQL-GNVTRDSDLRTLLLSTG-------NRSILV 300 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~-------------~i~~l~~-~~l~~~~~L~~l~~~~~-------~~sIL~ 300 (525)
..+..|||||+.|.||+.++.++|+.+-+ ++..++. +...+-.+++.+....+ ..-|++
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEE
Confidence 34678999999999999999999998721 3334441 11123456777665542 456999
Q ss_pred EeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCC
Q 009791 301 IEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERL 380 (525)
Q Consensus 301 iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~L 380 (525)
||++|.+. ....+.||..|+.. ++..++|++|+.++.|
T Consensus 96 I~~~e~m~--------------------------------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kl 133 (299)
T PRK07132 96 IKNIEKTS--------------------------------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKV 133 (299)
T ss_pred EecccccC--------------------------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhC
Confidence 99998762 23567899999874 4557888888888999
Q ss_pred CccccCCCceeeEEEcCCCCHHHHHHHHH
Q 009791 381 DPALLRPGRMDMHIHMSYCGPYGFRLLAA 409 (525)
Q Consensus 381 DpaLlRpGRfd~~I~~~~p~~~~r~~L~~ 409 (525)
-|.++. |. ..+++..++.++....+.
T Consensus 134 l~TI~S--Rc-~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 134 LPTIVS--RC-QVFNVKEPDQQKILAKLL 159 (299)
T ss_pred hHHHHh--Ce-EEEECCCCCHHHHHHHHH
Confidence 999887 54 568999998888765554
No 233
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.16 E-value=1.3e-05 Score=87.08 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=60.9
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChh
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDS 284 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~ 284 (525)
.+.+++|.....+.+.+.+.... +....+|+.|++||||+++|+++.... +.+++.++|+.+.. .
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-D 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-H
Confidence 35567776665555555544222 224569999999999999999999886 46899999998833 3
Q ss_pred HHHHHHHH------------------hCCCeEEEEeccccc
Q 009791 285 DLRTLLLS------------------TGNRSILVIEDIDCS 307 (525)
Q Consensus 285 ~L~~l~~~------------------~~~~sIL~iDdID~~ 307 (525)
.+...+.. ......|||||||.+
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l 244 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC
Confidence 33333311 224578999999987
No 234
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=9.3e-05 Score=77.94 Aligned_cols=175 Identities=15% Similarity=0.070 Sum_probs=109.9
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEecCCcCChh
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQLGNVTRDS 284 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~~~l~~~~ 284 (525)
+++.|-+..+..+.+++...+. ...+.++.+.|-||||||.+..-+-..+ ....++++|.++....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 5777777777766665544433 3346678899999999998888666555 2355788888763221
Q ss_pred ---------------------HHHHHHHH----hCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhcccccc
Q 009791 285 ---------------------DLRTLLLS----TGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDF 339 (525)
Q Consensus 285 ---------------------~L~~l~~~----~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (525)
+..+.|.. ...+-||++||+|.++. |.
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t---r~------------------------- 272 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT---RS------------------------- 272 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh---cc-------------------------
Confidence 11222221 23477999999999862 11
Q ss_pred CCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCcccc----CCCceeeEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 340 AGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALL----RPGRMDMHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 340 ~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLl----RpGRfd~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
+. .|..++.+....+..+++|+-+|..+.-|..|- |.+--...+.|++.+.++..+|+..-+...
T Consensus 273 -------~~----vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 273 -------QT----VLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred -------cc----eeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 11 122233332233456788999999887666554 234455678999999999999999877654
Q ss_pred CCCcccHHHHHHHHhhc
Q 009791 416 DCEHKLVAEIETLLKTI 432 (525)
Q Consensus 416 ~~~~~~~~~i~~l~~~~ 432 (525)
.........++-.++..
T Consensus 342 ~t~~~~~~Aie~~ArKv 358 (529)
T KOG2227|consen 342 STSIFLNAAIELCARKV 358 (529)
T ss_pred cccccchHHHHHHHHHh
Confidence 32222233444445444
No 235
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.12 E-value=2.6e-05 Score=77.00 Aligned_cols=156 Identities=17% Similarity=0.263 Sum_probs=103.2
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-CCceE--------
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-KFDVF-------- 273 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-~~~i~-------- 273 (525)
...|.+|+.+....+....+..... . + .. ..+|+|||+|+||-|.+.++-+++ |..+.
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~-----~------~-d~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSS-----T------G-DF-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcc-----c------C-CC-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 3568888888887777666654321 0 0 11 269999999999999999999887 21111
Q ss_pred --------------------EEecCCcCC--hhHHHHHHHHhC---------C--CeEEEEeccccccCCCCCCCCCCCC
Q 009791 274 --------------------DLQLGNVTR--DSDLRTLLLSTG---------N--RSILVIEDIDCSVDLPDRRNGNENN 320 (525)
Q Consensus 274 --------------------~l~~~~l~~--~~~L~~l~~~~~---------~--~sIL~iDdID~~~~~~~r~~~~~~~ 320 (525)
.++.++... -.-+.+++.+.. + =-+++|-|.|.+-
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT------------ 140 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT------------ 140 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh------------
Confidence 111222211 122445554432 1 1389999999772
Q ss_pred chhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCC
Q 009791 321 ADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCG 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~ 400 (525)
+....+|-.-|+...+.| -+|+.+|....+=+++.. |. ..|.+|.|+
T Consensus 141 --------------------------~dAQ~aLRRTMEkYs~~~----RlIl~cns~SriIepIrS--RC-l~iRvpaps 187 (351)
T KOG2035|consen 141 --------------------------RDAQHALRRTMEKYSSNC----RLILVCNSTSRIIEPIRS--RC-LFIRVPAPS 187 (351)
T ss_pred --------------------------HHHHHHHHHHHHHHhcCc----eEEEEecCcccchhHHhh--he-eEEeCCCCC
Confidence 123344555666665554 377888999999999987 64 568999999
Q ss_pred HHHHHHHHHHHhCCcC
Q 009791 401 PYGFRLLAANYLGITD 416 (525)
Q Consensus 401 ~~~r~~L~~~~l~~~~ 416 (525)
.++.-.++...+..++
T Consensus 188 ~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 188 DEEITSVLSKVLKKEG 203 (351)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998887663
No 236
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.12 E-value=1.5e-05 Score=85.95 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=47.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHHHHHHHH------------------hCCCeEEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDLRTLLLS------------------TGNRSILVIE 302 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L~~l~~~------------------~~~~sIL~iD 302 (525)
...+|++|++||||+++++++.... +.+++.++|..+.. ..+...+.. .....+||||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 244 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEe
Confidence 3569999999999999999997764 57899999998853 333332211 1245799999
Q ss_pred cccccc
Q 009791 303 DIDCSV 308 (525)
Q Consensus 303 dID~~~ 308 (525)
|||.+-
T Consensus 245 ~i~~l~ 250 (457)
T PRK11361 245 EIGEMP 250 (457)
T ss_pred chhhCC
Confidence 999873
No 237
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.11 E-value=3.9e-05 Score=77.36 Aligned_cols=150 Identities=20% Similarity=0.188 Sum_probs=79.2
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHH--cC--Cc-eEEEecCCcCCh------------------------hHHHHHHHH
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANY--LK--FD-VFDLQLGNVTRD------------------------SDLRTLLLS 292 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~--l~--~~-i~~l~~~~l~~~------------------------~~L~~l~~~ 292 (525)
...+-+.|+|++|+|||+||.++++. .. ++ ++-++++...+. ..+...+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34566889999999999999999987 32 32 233444332111 112222222
Q ss_pred h--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEE
Q 009791 293 T--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERII 370 (525)
Q Consensus 293 ~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~iv 370 (525)
. ..+++|+|||++... .+..+...+-. ...+.-|
T Consensus 97 ~L~~~~~LlVlDdv~~~~----------------------------------------~~~~l~~~~~~----~~~~~ki 132 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE----------------------------------------DLEELREPLPS----FSSGSKI 132 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH----------------------------------------HH-------HC----HHSS-EE
T ss_pred hhccccceeeeeeecccc----------------------------------------ccccccccccc----ccccccc
Confidence 1 358999999988431 12222222111 1112346
Q ss_pred EEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcC--CCcccHHHHHHHHhhcCCCHHHH
Q 009791 371 VFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITD--CEHKLVAEIETLLKTINITPAQV 439 (525)
Q Consensus 371 I~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~--~~~~~~~~i~~l~~~~~~tpadi 439 (525)
|+||....... .+- .-+..++++..+.++-.+++..+..... ..........++++..+..|--|
T Consensus 133 lvTTR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 133 LVTTRDRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp EEEESCGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred ccccccccccc-ccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66776543221 111 1167899999999999999999876542 01122334556666666666433
No 238
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.10 E-value=0.00013 Score=80.03 Aligned_cols=130 Identities=19% Similarity=0.254 Sum_probs=80.6
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC----------CceEEEecCCcCCh----------------------hHHHHHHH--
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK----------FDVFDLQLGNVTRD----------------------SDLRTLLL-- 291 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~----------~~i~~l~~~~l~~~----------------------~~L~~l~~-- 291 (525)
.+.+.|-||||||.++..+-+.|. ++++.++...+..- +.|..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 577889999999999999998773 56666665554321 22333343
Q ss_pred -HhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEE
Q 009791 292 -STGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERII 370 (525)
Q Consensus 292 -~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~iv 370 (525)
.-..++||+|||.|.++. | ++.+ |.|++|-.... +...+|
T Consensus 504 k~~~~~~VvLiDElD~Lvt---r--------------------------------~QdV---lYn~fdWpt~~-~sKLvv 544 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVT---R--------------------------------SQDV---LYNIFDWPTLK-NSKLVV 544 (767)
T ss_pred CCCCCCEEEEeccHHHHhc---c--------------------------------cHHH---HHHHhcCCcCC-CCceEE
Confidence 113579999999999874 1 1223 44555533222 234566
Q ss_pred EEecCCCCCCCccccC---CCcee-eEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 371 VFTTNHKERLDPALLR---PGRMD-MHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 371 I~TTN~~~~LDpaLlR---pGRfd-~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
|+..|+.+ |++.++- .-|++ ..|.|...+.+|.++|+..-|...
T Consensus 545 i~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 545 IAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred EEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 66666654 3443331 01333 246777788999999998877533
No 239
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.09 E-value=4e-05 Score=92.13 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=43.1
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 202 KLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 202 ~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
....+..++.++|.++..++|...+. .+....+-+-++||+|+||||||+++++.+..
T Consensus 176 ~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 176 NLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 33455678899998887777765542 12233566889999999999999999988743
No 240
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.07 E-value=3.2e-05 Score=83.71 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=92.5
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHH
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDL 286 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L 286 (525)
..+++....-.++.+.+.... .....+++.|.+||||+++++++.... +.+++.++|..+. ...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 346666665566665554321 223468999999999999999998775 4689999999873 3333
Q ss_pred HHHHH------------------HhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHH
Q 009791 287 RTLLL------------------STGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHML 348 (525)
Q Consensus 287 ~~l~~------------------~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (525)
...+. .....+.|||||||.+-. .
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~--------------------------------------~ 243 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL--------------------------------------D 243 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH--------------------------------------H
Confidence 33331 122467899999998731 2
Q ss_pred HHHHHhhhhcCCC-CCCC------CceEEEEecCCC-C------CCCccccCCCcee-eEEEcCCCC--HHHHHHHHHHH
Q 009791 349 TLSGLLNFIDGLW-SSCG------DERIIVFTTNHK-E------RLDPALLRPGRMD-MHIHMSYCG--PYGFRLLAANY 411 (525)
Q Consensus 349 ~ls~LLn~idgl~-s~~~------~~~ivI~TTN~~-~------~LDpaLlRpGRfd-~~I~~~~p~--~~~r~~L~~~~ 411 (525)
....|+.+++.-. ...+ -.+-||+||+.. + .+.+.|.. |+. .+|++|... .+....|+..|
T Consensus 244 ~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~ 321 (463)
T TIGR01818 244 AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHF 321 (463)
T ss_pred HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHH
Confidence 3344565554211 1001 124566666643 2 33344444 444 477777766 56677777777
Q ss_pred hC
Q 009791 412 LG 413 (525)
Q Consensus 412 l~ 413 (525)
+.
T Consensus 322 l~ 323 (463)
T TIGR01818 322 LA 323 (463)
T ss_pred HH
Confidence 64
No 241
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.05 E-value=1.8e-05 Score=87.59 Aligned_cols=119 Identities=20% Similarity=0.158 Sum_probs=85.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCC--ceEEEecCC----cCChhHHHHHHHHh-----------CCCeEEEEeccccc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKF--DVFDLQLGN----VTRDSDLRTLLLST-----------GNRSILVIEDIDCS 307 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~--~i~~l~~~~----l~~~~~L~~l~~~~-----------~~~sIL~iDdID~~ 307 (525)
.|+||-|++|||||+++++++..+.. +|..+..+. +...-+|...+..- ....|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999999854 776665443 22233444444321 24579999999966
Q ss_pred cCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcC---------CCCCCCCceEEEEecCCC-
Q 009791 308 VDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDG---------LWSSCGDERIIVFTTNHK- 377 (525)
Q Consensus 308 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idg---------l~s~~~~~~ivI~TTN~~- 377 (525)
- ..+++.|+..|+. .....+..+++|+|-|..
T Consensus 106 ~--------------------------------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~ 147 (584)
T PRK13406 106 E--------------------------------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAE 147 (584)
T ss_pred C--------------------------------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChh
Confidence 2 3578888888753 333334456778875533
Q ss_pred --CCCCccccCCCceeeEEEcCCCCHHH
Q 009791 378 --ERLDPALLRPGRMDMHIHMSYCGPYG 403 (525)
Q Consensus 378 --~~LDpaLlRpGRfd~~I~~~~p~~~~ 403 (525)
+.|+++|+. ||+.+|.+++|+..+
T Consensus 148 ~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 148 EDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred cccCCCHHhHh--heEEEEEcCCCChHH
Confidence 569999999 999999999998764
No 242
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.04 E-value=9.7e-05 Score=79.11 Aligned_cols=72 Identities=24% Similarity=0.372 Sum_probs=54.0
Q ss_pred cceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 197 RWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 197 ~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.|-. ...|.+.++|+-......++.+.+..+... ......+-+||+||+||||||.++-||.++|+.+..-.
T Consensus 71 lW~e--Ky~P~t~eeLAVHkkKI~eVk~WL~~~~~~------~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 71 LWVE--KYKPRTLEELAVHKKKISEVKQWLKQVAEF------TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred hhHH--hcCcccHHHHhhhHHhHHHHHHHHHHHHHh------ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 4643 478999999999988877777776622211 11223456889999999999999999999999888654
No 243
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.03 E-value=3.2e-05 Score=83.28 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=59.3
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChh
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDS 284 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~ 284 (525)
.+..+++.....+.+.+.+.... .....++++|++||||+++|+++.... +.+++.++|..+.. .
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~ 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-N 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-H
Confidence 34456665555555555443221 223568999999999999999998765 46899999998743 3
Q ss_pred HHHHHHHH------------------hCCCeEEEEeccccc
Q 009791 285 DLRTLLLS------------------TGNRSILVIEDIDCS 307 (525)
Q Consensus 285 ~L~~l~~~------------------~~~~sIL~iDdID~~ 307 (525)
.+...+.. ......|||||||.+
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l 245 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL 245 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC
Confidence 33333211 134679999999987
No 244
>PHA00729 NTP-binding motif containing protein
Probab=98.01 E-value=7.9e-06 Score=79.59 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=39.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc----------CChhHHHHHHHHh----CCCeEEEEeccccc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV----------TRDSDLRTLLLST----GNRSILVIEDIDCS 307 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l----------~~~~~L~~l~~~~----~~~sIL~iDdID~~ 307 (525)
.++|+|+||||||+||.+||+.++..+..+..... .+..++...+..+ ....+|+|||+-.-
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~ 94 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIW 94 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchh
Confidence 69999999999999999999998644433321111 1223333333322 23358999996543
No 245
>PRK15115 response regulator GlrR; Provisional
Probab=97.94 E-value=5.3e-05 Score=81.58 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=47.9
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHHHHHHH------------------HhCCCeEEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDLRTLLL------------------STGNRSILVIE 302 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L~~l~~------------------~~~~~sIL~iD 302 (525)
...++++|++||||+++|+++.... +.+++.++|..+.. ..+...+. .......||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 3468999999999999999998875 47899999998743 33333221 12245799999
Q ss_pred cccccc
Q 009791 303 DIDCSV 308 (525)
Q Consensus 303 dID~~~ 308 (525)
|||.+-
T Consensus 236 ~i~~l~ 241 (444)
T PRK15115 236 EIGDMP 241 (444)
T ss_pred ccccCC
Confidence 999873
No 246
>PHA02774 E1; Provisional
Probab=97.94 E-value=7.4e-05 Score=81.44 Aligned_cols=58 Identities=28% Similarity=0.479 Sum_probs=43.1
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEE-EecCCcCChhHHHHHHHHhCCCeEEEEecc
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFD-LQLGNVTRDSDLRTLLLSTGNRSILVIEDI 304 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~-l~~~~l~~~~~L~~l~~~~~~~sIL~iDdI 304 (525)
|+|.++.++||||||||||+++.+|++.++..++. ++..+ .-.|......-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-------ccccchhccCCEEEEecC
Confidence 56667899999999999999999999999765544 44321 112344445569999998
No 247
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.92 E-value=2.6e-05 Score=80.49 Aligned_cols=77 Identities=23% Similarity=0.341 Sum_probs=53.0
Q ss_pred ccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC--CceEEEecCCcCC----
Q 009791 209 FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK--FDVFDLQLGNVTR---- 282 (525)
Q Consensus 209 f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~--~~i~~l~~~~l~~---- 282 (525)
.+.++|+.+.++..-=.++ .++ -|+--.|++||.||||||||.||-|||++|| .||..++.+++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~-mIk-------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVD-MIK-------EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp ETTEES-HHHHHHHHHHHH-HHH-------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred cccccChHHHHHHHHHHHH-HHh-------cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 4678999888876544333 332 2344578999999999999999999999997 8999999988853
Q ss_pred -hhHHHHHHHHh
Q 009791 283 -DSDLRTLLLST 293 (525)
Q Consensus 283 -~~~L~~l~~~~ 293 (525)
.+.|.+.|.++
T Consensus 95 KTE~L~qa~Rra 106 (398)
T PF06068_consen 95 KTEALTQAFRRA 106 (398)
T ss_dssp HHHHHHHHHHCS
T ss_pred chHHHHHHHHHh
Confidence 24467776554
No 248
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.91 E-value=7.7e-06 Score=71.48 Aligned_cols=30 Identities=40% Similarity=0.802 Sum_probs=27.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
|++.||||+||||+++.+|+.+|+.++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999998877665
No 249
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00019 Score=72.88 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=46.7
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHh-CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCC
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRV-GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN 279 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~ 279 (525)
-++|..+.|+.+-=.|..-.++...-..+ .--.|+.+|..||.|+|||-+++-+|+..+.||+.++.+.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 36788888877644433211111111111 1124778999999999999999999999999999886553
No 250
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.88 E-value=6e-05 Score=80.92 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=67.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCc
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNV 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l 280 (525)
.+.-+|++++|......++++.+..+ .+..-.+||+|.+||||..+|++|-+.. +-||+.++|+.+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 55678999999888877777765533 2345679999999999999999998776 689999999988
Q ss_pred CChhHHHH-HH-------H-----------HhCCCeEEEEeccccc
Q 009791 281 TRDSDLRT-LL-------L-----------STGNRSILVIEDIDCS 307 (525)
Q Consensus 281 ~~~~~L~~-l~-------~-----------~~~~~sIL~iDdID~~ 307 (525)
-.+ -|.. +| . +.++..-||+|||-.+
T Consensus 308 Pe~-LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem 352 (560)
T COG3829 308 PET-LLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM 352 (560)
T ss_pred CHH-HHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC
Confidence 421 1111 12 1 1234568999999866
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.86 E-value=9.5e-05 Score=67.12 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=25.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
++|+||||+|||+++.+++..+ +.+++.+++
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 6899999999999999999887 455555544
No 252
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.83 E-value=7.5e-05 Score=71.95 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=33.5
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGN 279 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~ 279 (525)
|++..+-++++||||||||+++..+|... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67888889999999999999999988654 66788888764
No 253
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.82 E-value=0.00012 Score=84.13 Aligned_cols=174 Identities=22% Similarity=0.271 Sum_probs=108.0
Q ss_pred cceeccccCCCCccccccChHHHHHHHHHHHHHHHh-HHHHHHhCCC-Ccc-eeeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 197 RWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRR-KEFYKRVGRA-WKR-GYLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 197 ~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~-~~~y~~~g~~-~~r-g~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
.|..- +.|.....+.+....-..+.+.+...-.. +--|...+.. -.. .+|++||||.|||+.+.+.|.++|+.++
T Consensus 309 ~~~~k--~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 309 GWTEK--YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred ccccc--cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence 45542 34445567777666666666665544111 1112222111 112 3699999999999999999999999999
Q ss_pred EEecCCcCChhHHHHHHHHhC--------------------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 274 DLQLGNVTRDSDLRTLLLSTG--------------------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 274 ~l~~~~l~~~~~L~~l~~~~~--------------------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
..+.+...+...+...+..+. ...||++||+|-+++ .+|
T Consensus 387 E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dR-------------------- 445 (871)
T KOG1968|consen 387 EKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDR-------------------- 445 (871)
T ss_pred ecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhh--------------------
Confidence 999998876666555543321 123999999997753 111
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
..-.-++++.+ . +. +-||+|+|..+-.....+. |-+..|+|+-|+.++..--+..++.
T Consensus 446 -----------g~v~~l~~l~~---k--s~----~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~ 503 (871)
T KOG1968|consen 446 -----------GGVSKLSSLCK---K--SS----RPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICK 503 (871)
T ss_pred -----------hhHHHHHHHHH---h--cc----CCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhc
Confidence 11122344443 1 11 4588899987766653333 4446789999999987766666655
Q ss_pred Cc
Q 009791 414 IT 415 (525)
Q Consensus 414 ~~ 415 (525)
..
T Consensus 504 se 505 (871)
T KOG1968|consen 504 SE 505 (871)
T ss_pred cc
Confidence 43
No 254
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.80 E-value=0.0007 Score=73.69 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=79.1
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCHHHHHHHHHcC
Q 009791 368 RIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITPAQVAEQFMKS 446 (525)
Q Consensus 368 ~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpadi~~~l~~~ 446 (525)
.+|+.+.+ -.+|+.|.+ .-..+.+|+|+.++.+.++..+....+ .......++.++..+ |+|..++...+.+.
T Consensus 116 ~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ei~~~l~~~~~~~~-~~~~~~~~~~l~~~~~gls~~~~~~~~~~~ 189 (489)
T CHL00195 116 TIIIIASE--LNIPKELKD---LITVLEFPLPTESEIKKELTRLIKSLN-IKIDSELLENLTRACQGLSLERIRRVLSKI 189 (489)
T ss_pred EEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45555442 457777775 346789999999999999988765332 234456778888886 99999998876531
Q ss_pred --CCHHHHHHHHHHHHHHhhhcCCCC--CCCCCCCCCchhhhcchhhhhHhHHHh
Q 009791 447 --EDADVALAALIKLLKEKERNGSGD--VDGDEDEINLDEVAILESKKLKTQDQI 497 (525)
Q Consensus 447 --~~~~~al~~l~~al~~~~~~~~~~--~~~~~~~v~w~dIggl~~vK~~L~e~i 497 (525)
.+.....+++...++.++..-.+. .....++++|+||||++.+|+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~i~~~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~ 244 (489)
T CHL00195 190 IATYKTIDENSIPLILEEKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRS 244 (489)
T ss_pred HHHcCCCChhhHHHHHHHHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHH
Confidence 000111222222333333322221 234456789999999999999888754
No 255
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.80 E-value=3.4e-05 Score=83.96 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=51.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-CCceEEEec
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-KFDVFDLQL 277 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-~~~i~~l~~ 277 (525)
....-|+++.|.++.++.|++.+..-.. .++ ..++-++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~------gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQ------GLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHH------hcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3445689999999999999887643332 122 234578899999999999999999988 467887754
No 256
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.79 E-value=3.3e-05 Score=78.71 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=53.6
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC--CceEEEecCCcCC-----
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK--FDVFDLQLGNVTR----- 282 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~--~~i~~l~~~~l~~----- 282 (525)
+-++|+.+.++..-= +...+ +-|+--.||+|+.||||||||.||-+||++|| .||..++.+++.+
T Consensus 39 dG~VGQ~~AReAaGv-Iv~mi-------k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK 110 (450)
T COG1224 39 DGLVGQEEAREAAGV-IVKMI-------KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK 110 (450)
T ss_pred CcccchHHHHHhhhH-HHHHH-------HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccH
Confidence 567887777664322 22222 22556689999999999999999999999997 7888888887743
Q ss_pred hhHHHHHHHH
Q 009791 283 DSDLRTLLLS 292 (525)
Q Consensus 283 ~~~L~~l~~~ 292 (525)
...|.+.|..
T Consensus 111 TE~L~qa~Rr 120 (450)
T COG1224 111 TEALTQALRR 120 (450)
T ss_pred HHHHHHHHHH
Confidence 2445666644
No 257
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.77 E-value=2.3e-05 Score=72.77 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=31.1
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+.+..++|+||||||||++++++|..+++++++.|
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 34668999999999999999999999999988754
No 258
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.74 E-value=5.6e-05 Score=82.55 Aligned_cols=160 Identities=26% Similarity=0.329 Sum_probs=91.2
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhC-CCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCC--------cC
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVG-RAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN--------VT 281 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~--------l~ 281 (525)
+|.+.++.|+-|+-. .|-.....+...| ..---.+||+|-||||||-|.+.+++.+-.-+|.=--++ +.
T Consensus 430 sIye~edvKkglLLq--LfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQ--LFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHH--HhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 456777777776432 2322222233323 011124999999999999999999998866555321111 11
Q ss_pred ChhHHHHHHHHh-----CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 282 RDSDLRTLLLST-----GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 282 ~~~~L~~l~~~~-----~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
.+.+-+++..+. +...|-+|||+|.+-+ .+-+.|+..
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d--------------------------------------StrSvLhEv 549 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD--------------------------------------STRSVLHEV 549 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH--------------------------------------HHHHHHHHH
Confidence 223334444443 3578999999998732 122223333
Q ss_pred hc---------CCCCCCCCceEEEEecCCCC-------------CCCccccCCCceeeEEE-cCCCCHHHHHHHHHHHh
Q 009791 357 ID---------GLWSSCGDERIIVFTTNHKE-------------RLDPALLRPGRMDMHIH-MSYCGPYGFRLLAANYL 412 (525)
Q Consensus 357 id---------gl~s~~~~~~ivI~TTN~~~-------------~LDpaLlRpGRfd~~I~-~~~p~~~~r~~L~~~~l 412 (525)
|+ |+..+-+-.-=|++++|..+ .|+|.|++ |||...- +..|++..=+.|..+..
T Consensus 550 MEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 550 MEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred HHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHH
Confidence 32 33222222234788888432 47899999 9998654 46666654455555444
No 259
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.73 E-value=3e-05 Score=75.56 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=38.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCC----------c------CChhHHHHHHHHh----CCCeEEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN----------V------TRDSDLRTLLLST----GNRSILVIED 303 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~----------l------~~~~~L~~l~~~~----~~~sIL~iDd 303 (525)
+.-+|+||+||+|||++|+.+++. .-++..|.+. + ..-..+.+.+... ...-+||||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 345999999999999999999742 2233333221 0 0112333333322 2357999999
Q ss_pred cccc
Q 009791 304 IDCS 307 (525)
Q Consensus 304 ID~~ 307 (525)
|+.+
T Consensus 90 I~~l 93 (220)
T TIGR01618 90 ISAL 93 (220)
T ss_pred HHHH
Confidence 9976
No 260
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.71 E-value=0.00016 Score=72.46 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=59.3
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcce--eeEeCCCCCcHHHHHHHHHHHcCC-----ceEE-----EecC
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRG--YLLYGPPGTGKSSLVAAMANYLKF-----DVFD-----LQLG 278 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg--~LL~GppGTGKTsLa~AiA~~l~~-----~i~~-----l~~~ 278 (525)
.|.|+.-.++.|+..+..|+.++ .+.+. +=|||++||||+..++-||+.+-. +++. .++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~--------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANP--------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP 154 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCC--------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC
Confidence 57888899999999999888765 12333 448999999999999999998721 1111 1111
Q ss_pred CcCCh----hHHHHHHHH---hCCCeEEEEeccccc
Q 009791 279 NVTRD----SDLRTLLLS---TGNRSILVIEDIDCS 307 (525)
Q Consensus 279 ~l~~~----~~L~~l~~~---~~~~sIL~iDdID~~ 307 (525)
.-..- .+|+..+.. ..+.||.++||.|.+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 11111 233333332 247899999999987
No 261
>PRK08118 topology modulation protein; Reviewed
Probab=97.67 E-value=8.1e-05 Score=69.58 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=29.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
-+++.||||+||||+++.|++.++++++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999998873
No 262
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.66 E-value=0.002 Score=68.04 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=56.8
Q ss_pred EEEecCCC---CCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCC-------------------cccHHHHHH
Q 009791 370 IVFTTNHK---ERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCE-------------------HKLVAEIET 427 (525)
Q Consensus 370 vI~TTN~~---~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~-------------------~~~~~~i~~ 427 (525)
|||.|+.+ ..|..|| |.|.-+.|.++.|+++.-+..+...|...... .....+++.
T Consensus 186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~ 263 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDE 263 (431)
T ss_pred EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHH
Confidence 45555444 4566677 55888999999999999888888888643100 134556666
Q ss_pred HHhhcCCCHHHHHHHHH---cCCCHHHHHHHHHH
Q 009791 428 LLKTINITPAQVAEQFM---KSEDADVALAALIK 458 (525)
Q Consensus 428 l~~~~~~tpadi~~~l~---~~~~~~~al~~l~~ 458 (525)
.+...|----|+..+.. ...+|..|++++++
T Consensus 264 ~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 264 CIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 66666555556654433 24678888887655
No 263
>PF14516 AAA_35: AAA-like domain
Probab=97.65 E-value=0.0012 Score=68.69 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=91.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC-----hh-------------------------------
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR-----DS------------------------------- 284 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~-----~~------------------------------- 284 (525)
+.-+.++||..+|||||...+.+.+ |+..+.+|+..+.. ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4567899999999999999998776 78888888876521 00
Q ss_pred -H----HHH-HHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhc
Q 009791 285 -D----LRT-LLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFID 358 (525)
Q Consensus 285 -~----L~~-l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~id 358 (525)
. +.+ ++.....|-||+|||||++++.+ ......+..|-.+-.
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--------------------------------~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--------------------------------QIADDFFGLLRSWYE 158 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc--------------------------------chHHHHHHHHHHHHH
Confidence 1 111 12223578999999999997411 011112222222222
Q ss_pred -----CCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcC
Q 009791 359 -----GLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTIN 433 (525)
Q Consensus 359 -----gl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~ 433 (525)
..|.. =+++++-+..+......-..|=-+...|+++.-+.++...|++.|-.. -....++.+..-+|
T Consensus 159 ~~~~~~~~~~---L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tg 230 (331)
T PF14516_consen 159 QRKNNPIWQK---LRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTG 230 (331)
T ss_pred hcccCcccce---EEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHC
Confidence 12221 134444332222211111344456678899999999999999887422 22333777776666
Q ss_pred CCHHHHHH
Q 009791 434 ITPAQVAE 441 (525)
Q Consensus 434 ~tpadi~~ 441 (525)
--|-=+..
T Consensus 231 GhP~Lv~~ 238 (331)
T PF14516_consen 231 GHPYLVQK 238 (331)
T ss_pred CCHHHHHH
Confidence 66754443
No 264
>PRK07261 topology modulation protein; Provisional
Probab=97.65 E-value=6.1e-05 Score=70.64 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=27.1
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+++.|+||+|||||++.|+..++.+++.+|
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 789999999999999999999998877655
No 265
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.65 E-value=9.2e-05 Score=70.79 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=58.3
Q ss_pred eeEeCCCCCcHHHHHHHH-HHHc---CCceEEEecCCcC-----C---------------------hhHHHHHHHHhCCC
Q 009791 247 YLLYGPPGTGKSSLVAAM-ANYL---KFDVFDLQLGNVT-----R---------------------DSDLRTLLLSTGNR 296 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~Ai-A~~l---~~~i~~l~~~~l~-----~---------------------~~~L~~l~~~~~~~ 296 (525)
+|++|.||+|||+.|-.. .... |.+++. +...+. . ...+. .....+..
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPD-DWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHH-HHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhh-hhcccCCC
Confidence 689999999999887655 3322 666665 433221 0 01111 11222368
Q ss_pred eEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCC
Q 009791 297 SILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNH 376 (525)
Q Consensus 297 sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~ 376 (525)
+||+|||+...++ .|..... .. ...++++... ...+.-||++|-+
T Consensus 81 ~liviDEa~~~~~--~r~~~~~--------------------------~~----~~~~~~l~~h---Rh~g~diiliTQ~ 125 (193)
T PF05707_consen 81 SLIVIDEAQNFFP--SRSWKGK--------------------------KV----PEIIEFLAQH---RHYGWDIILITQS 125 (193)
T ss_dssp -EEEETTGGGTSB-----T-T----------------------------------HHHHGGGGC---CCTT-EEEEEES-
T ss_pred cEEEEECChhhcC--CCccccc--------------------------cc----hHHHHHHHHh---CcCCcEEEEEeCC
Confidence 9999999999875 3322100 00 1122333221 1234788999999
Q ss_pred CCCCCccccCCCceeeEEEcCCC
Q 009791 377 KERLDPALLRPGRMDMHIHMSYC 399 (525)
Q Consensus 377 ~~~LDpaLlRpGRfd~~I~~~~p 399 (525)
+..||+.+++ .++.++++--+
T Consensus 126 ~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 126 PSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp GGGB-HHHHC--CEEEEEEEEE-
T ss_pred HHHHhHHHHH--HHheEEEEEee
Confidence 9999999987 88888877543
No 266
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.64 E-value=0.00039 Score=81.30 Aligned_cols=141 Identities=20% Similarity=0.231 Sum_probs=90.0
Q ss_pred CCCcceeeEeCCCCCcHHH-HHHHHHHHcCCceEEEecCCcCChh-HHHHHHHHhC------------C----CeEEEEe
Q 009791 241 RAWKRGYLLYGPPGTGKSS-LVAAMANYLKFDVFDLQLGNVTRDS-DLRTLLLSTG------------N----RSILVIE 302 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTs-La~AiA~~l~~~i~~l~~~~l~~~~-~L~~l~~~~~------------~----~sIL~iD 302 (525)
....|||+++||||+|||+ ++-++-+++-+.++.++.+.-+... .|..+-..+. . .-|||.|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 4567999999999999998 5788899999999999988765544 4444333331 1 2599999
Q ss_pred ccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCC------CceEEEEecCC
Q 009791 303 DIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCG------DERIIVFTTNH 376 (525)
Q Consensus 303 dID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~------~~~ivI~TTN~ 376 (525)
||. + +. .+.-. ....-.-+..|+ +=.|+|++.. .++++++++|.
T Consensus 1571 eIn-L-p~-~~~y~--------------------------~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp 1620 (3164)
T COG5245 1571 EIN-L-PY-GFEYY--------------------------PPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNP 1620 (3164)
T ss_pred ccC-C-cc-ccccC--------------------------CCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCC
Confidence 999 2 20 01000 000011111111 2245665421 24788899998
Q ss_pred CCCC-----CccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 377 KERL-----DPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 377 ~~~L-----DpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
+.+. +..++| | ...|++.||.-.....|...++..
T Consensus 1621 ~td~gRv~~~eRf~r--~-~v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1621 GTDEGRVKYYERFIR--K-PVFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred CCCcccCccHHHHhc--C-ceEEEecCcchhhHHHHHHHHHHH
Confidence 7542 344554 2 456889999999999999887753
No 267
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.62 E-value=0.00032 Score=75.35 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=48.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHHHHHHHH------------------hCCCeEEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDLRTLLLS------------------TGNRSILVIE 302 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L~~l~~~------------------~~~~sIL~iD 302 (525)
...++++|.+||||+++++++.... +.+++.++|+.+.. ..+...+.. ....++||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 4679999999999999999997655 47899999998743 344443321 1246789999
Q ss_pred cccccc
Q 009791 303 DIDCSV 308 (525)
Q Consensus 303 dID~~~ 308 (525)
|||.+.
T Consensus 241 ei~~l~ 246 (441)
T PRK10365 241 EIGDIS 246 (441)
T ss_pred ccccCC
Confidence 999873
No 268
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00018 Score=75.37 Aligned_cols=62 Identities=26% Similarity=0.359 Sum_probs=42.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc----C-CceEEEecCCc----------------------CChhHHHHHHHHhCCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL----K-FDVFDLQLGNV----------------------TRDSDLRTLLLSTGNR 296 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l----~-~~i~~l~~~~l----------------------~~~~~L~~l~~~~~~~ 296 (525)
+..++|.||+|+||||++..||..+ | ..+..+..... .+..++...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4568899999999999999999864 3 23433333221 2334566666767778
Q ss_pred eEEEEeccc
Q 009791 297 SILVIEDID 305 (525)
Q Consensus 297 sIL~iDdID 305 (525)
.+|+||..-
T Consensus 217 DlVLIDTaG 225 (374)
T PRK14722 217 HMVLIDTIG 225 (374)
T ss_pred CEEEEcCCC
Confidence 889988765
No 269
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.60 E-value=0.0003 Score=82.82 Aligned_cols=124 Identities=22% Similarity=0.326 Sum_probs=86.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHH--------------------HHhCCCeEEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLL--------------------LSTGNRSILVIED 303 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~--------------------~~~~~~sIL~iDd 303 (525)
.+++||-|.||.|||+|+.|+|+..|-.++.+++++-. +|..+| ..+....-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc---hHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 56899999999999999999999999999999988742 333333 3345667889999
Q ss_pred cccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhc-----------CCCCCCCCceEEEE
Q 009791 304 IDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFID-----------GLWSSCGDERIIVF 372 (525)
Q Consensus 304 ID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~id-----------gl~s~~~~~~ivI~ 372 (525)
+.-. ++.++.||=..+| ...+. ..+..|++
T Consensus 1620 iNLa--------------------------------------SQSVlEGLNacLDhR~eayIPEld~~f~~-HpnfrVFA 1660 (4600)
T COG5271 1620 INLA--------------------------------------SQSVLEGLNACLDHRREAYIPELDKTFDV-HPNFRVFA 1660 (4600)
T ss_pred hhhh--------------------------------------HHHHHHHHHHHHhhccccccccccceeec-cCCeeeee
Confidence 8843 1234444444444 33332 34455666
Q ss_pred ecCCC------CCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 373 TTNHK------ERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 373 TTN~~------~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
|-|.. ..||..++. ||. .|+|...+.+....|+...+
T Consensus 1661 aqNPq~qggGRKgLPkSF~n--RFs-vV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1661 AQNPQDQGGGRKGLPKSFLN--RFS-VVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred ecCchhcCCCcccCCHHHhh--hhh-eEEecccccchHHHHHHhhC
Confidence 66643 358999998 995 47888777777777766543
No 270
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.58 E-value=4.3e-05 Score=79.32 Aligned_cols=130 Identities=25% Similarity=0.278 Sum_probs=71.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCC----c----CChh-----HHHHHHHHhCCCeEEEEeccccccCCCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN----V----TRDS-----DLRTLLLSTGNRSILVIEDIDCSVDLPD 312 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~----l----~~~~-----~L~~l~~~~~~~sIL~iDdID~~~~~~~ 312 (525)
.+||.|.||||||.|.+.+++.....+|.---+. + ..+. .+..=..-.....|++|||+|.+-.
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~--- 135 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE--- 135 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C---
T ss_pred ceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc---
Confidence 4999999999999999998877766665431111 1 1111 1110011124679999999997621
Q ss_pred CCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC---------CCCCCCceEEEEecCCCC-----
Q 009791 313 RRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL---------WSSCGDERIIVFTTNHKE----- 378 (525)
Q Consensus 313 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl---------~s~~~~~~ivI~TTN~~~----- 378 (525)
.....|+..|+.- ...-+-+--|++++|...
T Consensus 136 -----------------------------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~ 180 (331)
T PF00493_consen 136 -----------------------------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDP 180 (331)
T ss_dssp -----------------------------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-T
T ss_pred -----------------------------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcch
Confidence 1233444444421 111011235788888665
Q ss_pred --------CCCccccCCCceeeEEEc-CCCCHHHHHHHHHHHhCCc
Q 009791 379 --------RLDPALLRPGRMDMHIHM-SYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 379 --------~LDpaLlRpGRfd~~I~~-~~p~~~~r~~L~~~~l~~~ 415 (525)
.++++|+. |||..+.+ ..++.+.=..|++..+...
T Consensus 181 ~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 181 NKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp TS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 58899999 99998775 6677666677777666543
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.57 E-value=0.00048 Score=64.74 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=23.9
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
+|++||||||||+|+..++.+. |..+..+++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999999887654 555555543
No 272
>PRK03839 putative kinase; Provisional
Probab=97.51 E-value=7.5e-05 Score=70.29 Aligned_cols=30 Identities=30% Similarity=0.604 Sum_probs=27.7
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999987754
No 273
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.50 E-value=8.7e-05 Score=67.51 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=28.0
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
++|+||||+|||++++++|..+++++++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999988765
No 274
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.50 E-value=0.00051 Score=66.65 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=31.6
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
|++..+-++++||||||||+++..+|.+. +.+++.++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 67777779999999999999999998765 5666666543
No 275
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.48 E-value=5.3e-05 Score=68.03 Aligned_cols=28 Identities=43% Similarity=0.701 Sum_probs=24.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
+++.|||||||||+++.++..++..+++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 6899999999999999999999944443
No 276
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.48 E-value=0.00044 Score=67.25 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=40.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHH-----HcCCceE---------EEecCCcCC-----------h---hHHHHHHHHhCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMAN-----YLKFDVF---------DLQLGNVTR-----------D---SDLRTLLLSTGN 295 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~-----~l~~~i~---------~l~~~~l~~-----------~---~~L~~l~~~~~~ 295 (525)
++.++|.||.|+|||++.+.++. ..|..+. +-....+.. . ..+..++..+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 36799999999999999999983 2343221 111111111 1 233334445568
Q ss_pred CeEEEEeccccc
Q 009791 296 RSILVIEDIDCS 307 (525)
Q Consensus 296 ~sIL~iDdID~~ 307 (525)
+++++|||+-.-
T Consensus 109 ~slvllDE~~~g 120 (213)
T cd03281 109 RSLVLIDEFGKG 120 (213)
T ss_pred CcEEEeccccCC
Confidence 999999998854
No 277
>PRK00625 shikimate kinase; Provisional
Probab=97.47 E-value=9.4e-05 Score=69.57 Aligned_cols=31 Identities=35% Similarity=0.610 Sum_probs=29.0
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.++|.|+||+|||++++.+|+.++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 3789999999999999999999999999876
No 278
>PRK13947 shikimate kinase; Provisional
Probab=97.47 E-value=9.7e-05 Score=68.72 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=29.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
.++|.|+||||||++++.+|+.+++++++.|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 48999999999999999999999999988763
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00036 Score=63.95 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=22.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-+.+.|+||+|||+++.-+|+.|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 458899999999999999999888
No 280
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.45 E-value=0.0002 Score=63.27 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=41.1
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.|.|++-.++.|++.+..++..+. -..|--+-|+||||||||.+++-||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 578888899999999998886541 1122345599999999999999999975
No 281
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.45 E-value=0.00019 Score=73.44 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
-.+++|+.||||-|+|||.|.-..-..+-.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 346799999999999999999988776643
No 282
>PRK13949 shikimate kinase; Provisional
Probab=97.44 E-value=0.00011 Score=68.85 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=29.1
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.++|.||||+|||++++.+|+.++++++++|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999998876
No 283
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.43 E-value=0.0019 Score=62.01 Aligned_cols=36 Identities=42% Similarity=0.558 Sum_probs=27.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGN 279 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~ 279 (525)
.+..++.||||||||+++++++..+ +..++.+..+.
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 3568899999999999999988766 56777766554
No 284
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0019 Score=68.36 Aligned_cols=65 Identities=22% Similarity=0.395 Sum_probs=43.0
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcC-------CceE--EEecCCcC--------------------ChhHHHHHHHHh
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLK-------FDVF--DLQLGNVT--------------------RDSDLRTLLLST 293 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~-------~~i~--~l~~~~l~--------------------~~~~L~~l~~~~ 293 (525)
.++-++|+||+|+||||.+.-+|..+. ..+. .+|+-... ....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 456799999999999999999998763 3343 34432211 224455555555
Q ss_pred CCCeEEEEeccccc
Q 009791 294 GNRSILVIEDIDCS 307 (525)
Q Consensus 294 ~~~sIL~iDdID~~ 307 (525)
...-+|+||.+..+
T Consensus 253 ~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 KDFDLVLVDTIGKS 266 (388)
T ss_pred CCCCEEEEcCCCCC
Confidence 56678888877644
No 285
>PTZ00202 tuzin; Provisional
Probab=97.40 E-value=0.014 Score=62.15 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=54.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChh
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDS 284 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~ 284 (525)
-|+...+..|-++...+|...+. ......++-+.|.||+|||||+|++.++..++...|.+++.. ...
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~----------~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg--~eE 324 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLR----------RLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG--TED 324 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHh----------ccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC--HHH
Confidence 34556677888887777766553 123334567789999999999999999999998888888773 344
Q ss_pred HHHHHHHH
Q 009791 285 DLRTLLLS 292 (525)
Q Consensus 285 ~L~~l~~~ 292 (525)
-|+.++..
T Consensus 325 lLr~LL~A 332 (550)
T PTZ00202 325 TLRSVVKA 332 (550)
T ss_pred HHHHHHHH
Confidence 44444443
No 286
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.39 E-value=0.00044 Score=67.32 Aligned_cols=40 Identities=23% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---C------CceEEEecCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---K------FDVFDLQLGN 279 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~------~~i~~l~~~~ 279 (525)
|++...-+.|+||||+|||+|+..+|... + ..++.++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 67777789999999999999999998653 2 5556666543
No 287
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.39 E-value=0.0015 Score=69.62 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=78.8
Q ss_pred HhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc-eEEEecCCcCChhHHHHH---HHHhC--CCeEEEEeccccccCCC
Q 009791 238 RVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD-VFDLQLGNVTRDSDLRTL---LLSTG--NRSILVIEDIDCSVDLP 311 (525)
Q Consensus 238 ~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~-i~~l~~~~l~~~~~L~~l---~~~~~--~~sIL~iDdID~~~~~~ 311 (525)
.....++ -++++||-+||||++++-+...+.-. +|...+.......++.+. +.... .++.||||||.++-+
T Consensus 32 ~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~-- 108 (398)
T COG1373 32 KLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD-- 108 (398)
T ss_pred hcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh--
Confidence 3334444 79999999999999998888887554 344444433343343333 33333 458999999998721
Q ss_pred CCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCC-CccccCCCce
Q 009791 312 DRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERL-DPALLRPGRM 390 (525)
Q Consensus 312 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~L-DpaLlRpGRf 390 (525)
....+-...|.. ..-++|.++|..-.+ ..+-.=+||
T Consensus 109 -------------------------------------W~~~lk~l~d~~-----~~~v~itgsss~ll~~~~~~~L~GR- 145 (398)
T COG1373 109 -------------------------------------WERALKYLYDRG-----NLDVLITGSSSSLLSKEISESLAGR- 145 (398)
T ss_pred -------------------------------------HHHHHHHHHccc-----cceEEEECCchhhhccchhhhcCCC-
Confidence 122222333332 113555555554322 222233679
Q ss_pred eeEEEcCCCCHHHHHH-------------HHHHHhCCc
Q 009791 391 DMHIHMSYCGPYGFRL-------------LAANYLGIT 415 (525)
Q Consensus 391 d~~I~~~~p~~~~r~~-------------L~~~~l~~~ 415 (525)
-..+++.+.++.++.. ++..|+...
T Consensus 146 ~~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~Yl~~G 183 (398)
T COG1373 146 GKDLELYPLSFREFLKLKGEEIEPSKLELLFEKYLETG 183 (398)
T ss_pred ceeEEECCCCHHHHHhhcccccchhHHHHHHHHHHHhC
Confidence 4678888899999854 677777543
No 288
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00012 Score=68.22 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=30.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+.+.|.|++|+||||+.+++|+.|+++|++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 45899999999999999999999999999886
No 289
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.38 E-value=0.00079 Score=66.18 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=30.6
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
|++.+..++++||||||||+|+.+++... +..++.+++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 77888889999999999999999997543 556655554
No 290
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.38 E-value=0.00065 Score=69.91 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=45.2
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCc---------------------CChhHHHHHH---HH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNV---------------------TRDSDLRTLL---LS 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l---------------------~~~~~L~~l~---~~ 292 (525)
|++..+-+++|||||||||+|+..++... +..+..+|.... .+..+....+ ..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67777789999999999999987765543 455555544321 0111111122 22
Q ss_pred hCCCeEEEEeccccccC
Q 009791 293 TGNRSILVIEDIDCSVD 309 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~~ 309 (525)
...+.+||||-+-++.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 34688999999998853
No 291
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.35 E-value=0.0013 Score=70.50 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=64.8
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC---CceEEEecCCcCChh
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK---FDVFDLQLGNVTRDS 284 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~~~~l~~~~ 284 (525)
.+..++|.....+++.+.+...-. ..-.+|++|++||||-.+|++|-+.-. -||+.++|+.+..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 456788888777777777654332 245799999999999999999988764 599999999985332
Q ss_pred HHHHHHH-----------------HhCCCeEEEEeccccc
Q 009791 285 DLRTLLL-----------------STGNRSILVIEDIDCS 307 (525)
Q Consensus 285 ~L~~l~~-----------------~~~~~sIL~iDdID~~ 307 (525)
-=.++|- +..+...||+|||..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m 247 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM 247 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC
Confidence 2222332 1125679999999976
No 292
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.35 E-value=0.00047 Score=67.51 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=30.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---------CCceEEEecCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---------KFDVFDLQLGN 279 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---------~~~i~~l~~~~ 279 (525)
|++...-+.|+||||||||+++..+|... +..++.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 67777779999999999999999998543 25666666544
No 293
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.35 E-value=0.0011 Score=63.70 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=42.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHH-----cCCceE-----------EEecC---CcC--------ChhHHHHHHHHhC--
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANY-----LKFDVF-----------DLQLG---NVT--------RDSDLRTLLLSTG-- 294 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~-----l~~~i~-----------~l~~~---~l~--------~~~~L~~l~~~~~-- 294 (525)
.+.++|.||.|+||||+++.|+.. .|.++- ...++ ++. .-.++.+++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 467899999999999999999853 344331 00111 000 0144666777777
Q ss_pred CCeEEEEeccccc
Q 009791 295 NRSILVIEDIDCS 307 (525)
Q Consensus 295 ~~sIL~iDdID~~ 307 (525)
.|.+|++||.-.-
T Consensus 105 ~p~llllDEp~~g 117 (199)
T cd03283 105 EPVLFLLDEIFKG 117 (199)
T ss_pred CCeEEEEecccCC
Confidence 8999999997643
No 294
>PRK06217 hypothetical protein; Validated
Probab=97.34 E-value=0.00018 Score=68.09 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=28.2
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
-++|.|+||+||||+++++|..++++++++|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3889999999999999999999999887765
No 295
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.33 E-value=0.0011 Score=63.59 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=39.4
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhCCCeEEEEeccccc
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
|......++|.|+.|+|||++++.|+.++ |.=...... +.+ ....+...-|+.+||++.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~-~kd---~~~~l~~~~iveldEl~~~ 107 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD-DKD---FLEQLQGKWIVELDELDGL 107 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCC-CcH---HHHHHHHhHheeHHHHhhc
Confidence 55555668899999999999999997762 211122222 222 2333445679999999976
No 296
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.33 E-value=0.00041 Score=65.06 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=45.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChh-----------------------HHHHHHHH-hCCCeEEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDS-----------------------DLRTLLLS-TGNRSILVI 301 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~-----------------------~L~~l~~~-~~~~sIL~i 301 (525)
-+|+.||||+|||+++..++..++.+++.+......+++ +|.+++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 378999999999999999999998888877766553332 24444444 344667888
Q ss_pred ecccccc
Q 009791 302 EDIDCSV 308 (525)
Q Consensus 302 DdID~~~ 308 (525)
|-+-.+.
T Consensus 83 D~Lt~~~ 89 (170)
T PRK05800 83 DCLTTWV 89 (170)
T ss_pred hhHHHHH
Confidence 8777663
No 297
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.33 E-value=0.002 Score=68.13 Aligned_cols=60 Identities=15% Similarity=0.312 Sum_probs=38.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecCCcCChhHHHHHHHHhCCCeEEEEeccccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
...+++.||||||||+++.+++.+. | ....+..+..+-. .+.+......-+|+|||+--+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCC
Confidence 3579999999999999999998772 3 1111111111100 133344457789999999865
No 298
>PRK13948 shikimate kinase; Provisional
Probab=97.32 E-value=0.00023 Score=67.49 Aligned_cols=35 Identities=26% Similarity=0.169 Sum_probs=32.0
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+.++.++|.|++|||||++++.+|+.++.++++.|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34578999999999999999999999999999877
No 299
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.31 E-value=0.00019 Score=67.54 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=24.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
++++||||+||||+++.+|..+++..+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999999865443
No 300
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.31 E-value=0.00019 Score=65.27 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=24.8
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
++|+|+||+||||+++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 301
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.30 E-value=0.00073 Score=65.91 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=32.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
|++...-++++||||+|||+++..+|.+. +..++.+++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67777789999999999999999998754 6777777766
No 302
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.29 E-value=0.00046 Score=71.00 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=43.4
Q ss_pred cChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 214 MEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 214 g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+.++.++.+.+.+...+... .-.+.+..+.|.|+||||||++++.+|..+|++++++|
T Consensus 108 l~~~~~~~~~~~l~~~~~~~-----~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAG-----RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhh-----hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 34555666666665544322 12456678999999999999999999999999999655
No 303
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.28 E-value=0.0084 Score=70.26 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=26.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
.+-++++||+|.|||+++...+...+ ++.-+++
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 45689999999999999999887776 6555544
No 304
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.28 E-value=0.00021 Score=66.03 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=24.4
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
++|.|||||||||+++++++.++..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866543
No 305
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.28 E-value=0.00022 Score=64.18 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=28.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+.+.|+||||||++++.+|..+++++++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999998887
No 306
>PRK14532 adenylate kinase; Provisional
Probab=97.27 E-value=0.00022 Score=67.58 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=25.8
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
++|.||||+||||+++.+|..+|+..++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 78999999999999999999998766543
No 307
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.27 E-value=0.0011 Score=67.21 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=42.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc----C-CceEEEecCCc----------------------CChhHHHHHHHHhCCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL----K-FDVFDLQLGNV----------------------TRDSDLRTLLLSTGNR 296 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l----~-~~i~~l~~~~l----------------------~~~~~L~~l~~~~~~~ 296 (525)
++.++|.||+|+||||++..+|.++ + ..+..+++... .+..++.+.+......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~ 273 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDK 273 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCC
Confidence 3468899999999999999999876 3 56655555432 1234566666666666
Q ss_pred eEEEEec
Q 009791 297 SILVIED 303 (525)
Q Consensus 297 sIL~iDd 303 (525)
-+|+||.
T Consensus 274 d~vliDt 280 (282)
T TIGR03499 274 DLILIDT 280 (282)
T ss_pred CEEEEeC
Confidence 7888875
No 308
>PRK14531 adenylate kinase; Provisional
Probab=97.25 E-value=0.00027 Score=66.85 Aligned_cols=30 Identities=27% Similarity=0.528 Sum_probs=26.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
+-++++||||+||||+++.+|..+|+..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 458999999999999999999999877654
No 309
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0011 Score=65.07 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.6
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l 268 (525)
+-|.||+|||||||.+.||...
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7799999999999999999877
No 310
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.24 E-value=0.00068 Score=68.10 Aligned_cols=90 Identities=21% Similarity=0.371 Sum_probs=58.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC---ceEEEec-CCc
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF---DVFDLQL-GNV 280 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~---~i~~l~~-~~l 280 (525)
.+.+++++.......+.+.+.+...+ ..+..+|+.||+|+||||+++++..++.. .++.++- .++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v-----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV-----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH-----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc-----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 44588899887766666665554332 23567999999999999999999998843 3444431 111
Q ss_pred -------------CChhHHHHHHHHh--CCCeEEEEeccc
Q 009791 281 -------------TRDSDLRTLLLST--GNRSILVIEDID 305 (525)
Q Consensus 281 -------------~~~~~L~~l~~~~--~~~sIL~iDdID 305 (525)
.....+.+++..+ ..|.+|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1234566666655 479999999987
No 311
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.23 E-value=0.0011 Score=59.40 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=24.5
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
...-++|.|+.|+|||++++++++.++.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3456889999999999999999999864
No 312
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.23 E-value=0.00098 Score=72.00 Aligned_cols=69 Identities=25% Similarity=0.330 Sum_probs=48.4
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC--------------------ChhHHHHHHHHh--C
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT--------------------RDSDLRTLLLST--G 294 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~--------------------~~~~L~~l~~~~--~ 294 (525)
|++...-+||+||||+|||+|+..+|... +..+++++..+-. .+..+..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67777779999999999999999998766 5677776654311 112233333332 3
Q ss_pred CCeEEEEecccccc
Q 009791 295 NRSILVIEDIDCSV 308 (525)
Q Consensus 295 ~~sIL~iDdID~~~ 308 (525)
++.+|+||.|..+.
T Consensus 156 ~~~lVVIDSIq~l~ 169 (446)
T PRK11823 156 KPDLVVIDSIQTMY 169 (446)
T ss_pred CCCEEEEechhhhc
Confidence 68899999999775
No 313
>PRK13946 shikimate kinase; Provisional
Probab=97.23 E-value=0.00025 Score=67.17 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=30.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
++.++|.|+||||||++++.+|+.+|+++++.|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 457999999999999999999999999999877
No 314
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.23 E-value=0.0012 Score=68.17 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=46.7
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCc---------------------CChhHHHHHH---HH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNV---------------------TRDSDLRTLL---LS 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l---------------------~~~~~L~~l~---~~ 292 (525)
|+|..+-+++|||||||||+|+-.+|.+. +..+..+|...- .+..++..++ ..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 57777779999999999999999877543 556666654321 1112222222 22
Q ss_pred hCCCeEEEEeccccccC
Q 009791 293 TGNRSILVIEDIDCSVD 309 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~~ 309 (525)
...+.+||||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 34688999999998864
No 315
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0014 Score=75.13 Aligned_cols=149 Identities=21% Similarity=0.311 Sum_probs=91.4
Q ss_pred ccccccC-hHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceEEEec
Q 009791 209 FDTLAME-PDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVFDLQL 277 (525)
Q Consensus 209 f~~l~g~-~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~~l~~ 277 (525)
++.++|. ++..+.+++.+. ..-++.-+|.|.||.|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~-------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS-------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHh-------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 4666665 443344444432 2234677999999999999999999876 356677777
Q ss_pred CCcCC--------hhHHHHHHHHh---CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchh
Q 009791 278 GNVTR--------DSDLRTLLLST---GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQH 346 (525)
Q Consensus 278 ~~l~~--------~~~L~~l~~~~---~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
..+.. +..++.++... ....||+|||++.+.+.... ..
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-------------------------------~~ 300 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-------------------------------YG 300 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-------------------------------ch
Confidence 76532 35566666653 36789999999999752111 00
Q ss_pred HHHHHHHhhhhcCCCCCCCCceEEEEecCCC-----CCCCccccCCCceeeEEEcCCCCHHHHHHHHH
Q 009791 347 MLTLSGLLNFIDGLWSSCGDERIIVFTTNHK-----ERLDPALLRPGRMDMHIHMSYCGPYGFRLLAA 409 (525)
Q Consensus 347 ~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~-----~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~ 409 (525)
..-...+|..+-+ . ++..+|+||..- -.=||+|-| ||+. +.++.|+.+.-..++.
T Consensus 301 ~~d~~nlLkp~L~---r--g~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~ 360 (898)
T KOG1051|consen 301 AIDAANLLKPLLA---R--GGLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILP 360 (898)
T ss_pred HHHHHHhhHHHHh---c--CCeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhh
Confidence 1122223332221 1 225666644422 234999999 9986 5788888765443443
No 316
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.21 E-value=0.00028 Score=66.81 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=25.8
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
++|.||||+|||++++.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998776553
No 317
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.21 E-value=0.00033 Score=65.78 Aligned_cols=34 Identities=35% Similarity=0.629 Sum_probs=30.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
++.++|.||+|+|||++++.+|+.+++++++.|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3468999999999999999999999999988764
No 318
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.20 E-value=0.0015 Score=64.19 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=26.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEe
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQ 276 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~ 276 (525)
|++...-+++.||||||||+++..++..+ +..+..++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 56767779999999999999975554433 45555554
No 319
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.19 E-value=0.002 Score=66.59 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=47.1
Q ss_pred Ccc-ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-CCceEEEecCC
Q 009791 208 TFD-TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-KFDVFDLQLGN 279 (525)
Q Consensus 208 ~f~-~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-~~~i~~l~~~~ 279 (525)
.|+ ++.|.++..++|++.+..-- +.+-.-++-++|.||+|+|||+|++.+.+.+ .+++|.+..+-
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA-------~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~P 124 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAA-------QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCP 124 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHH-------hccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCc
Confidence 355 78999888888877554221 2223446778899999999999999999988 46777764443
No 320
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00076 Score=61.94 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=41.3
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCce--EEEecCCc-----------------CChhHHHHHH---HHhCCCeEEE
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFDV--FDLQLGNV-----------------TRDSDLRTLL---LSTGNRSILV 300 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~i--~~l~~~~l-----------------~~~~~L~~l~---~~~~~~sIL~ 300 (525)
...-+.|.||.|+|||+|+++|++.+..+- +.++...+ .+..+.+++. .-+.+|.+++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEE
Confidence 345688999999999999999999874221 11111110 1122222222 2235799999
Q ss_pred EeccccccC
Q 009791 301 IEDIDCSVD 309 (525)
Q Consensus 301 iDdID~~~~ 309 (525)
+||...-++
T Consensus 104 lDEp~~~lD 112 (157)
T cd00267 104 LDEPTSGLD 112 (157)
T ss_pred EeCCCcCCC
Confidence 999886553
No 321
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.18 E-value=0.00073 Score=75.67 Aligned_cols=52 Identities=29% Similarity=0.351 Sum_probs=41.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
-+|..|+.++|.++.++.|...+. .++.+||+||||||||++++++|..+..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~---------------~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAK---------------QRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHH---------------hCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 356799999999888876655432 1247999999999999999999998863
No 322
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.17 E-value=0.00018 Score=67.18 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=26.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCc---eEEEecCCc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFD---VFDLQLGNV 280 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~---i~~l~~~~l 280 (525)
++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5789999999999999999998887443 777777665
No 323
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.16 E-value=0.0024 Score=65.03 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=95.7
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHH---HHHcCCceEEEecCCc-CC----
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAM---ANYLKFDVFDLQLGNV-TR---- 282 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~Ai---A~~l~~~i~~l~~~~l-~~---- 282 (525)
.+.|..+..+.|.+.+..-.-.. -...+++.||.|+|||.++... +++.|-+++.+.+... .+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 45566666666666665433322 2468999999999999877644 3367777777655432 11
Q ss_pred ----------------------hhHHHHHHHHhC-------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 283 ----------------------DSDLRTLLLSTG-------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 283 ----------------------~~~L~~l~~~~~-------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
.+.+..++...+ .+.|.++||||..++
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~------------------------ 151 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP------------------------ 151 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc------------------------
Confidence 123334443221 245677789998764
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCC---CccccCCCceeeE-EEcC-CCCHHHHHHHH
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERL---DPALLRPGRMDMH-IHMS-YCGPYGFRLLA 408 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~L---DpaLlRpGRfd~~-I~~~-~p~~~~r~~L~ 408 (525)
....+ -|.|.+|-..+. ..++.||+.|.+-+.+ ...... ||.+. |+|. ....++...++
T Consensus 152 -----------h~rQt--llYnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~ 215 (408)
T KOG2228|consen 152 -----------HSRQT--LLYNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLY 215 (408)
T ss_pred -----------chhhH--HHHHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHH
Confidence 01112 255666655433 3568888877766544 445555 88877 6664 44678899999
Q ss_pred HHHhCCc
Q 009791 409 ANYLGIT 415 (525)
Q Consensus 409 ~~~l~~~ 415 (525)
++.+...
T Consensus 216 r~ll~v~ 222 (408)
T KOG2228|consen 216 RKLLSVP 222 (408)
T ss_pred HHHhcCC
Confidence 9988544
No 324
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.16 E-value=0.0013 Score=69.40 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=47.2
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC--------------------ChhHHHHHHHH--hC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT--------------------RDSDLRTLLLS--TG 294 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~--------------------~~~~L~~l~~~--~~ 294 (525)
|++...-+||+|+||+|||+|+..+|..+ +..+++++..+-. .+..+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 57777779999999999999999998765 3466666543210 11223333332 24
Q ss_pred CCeEEEEecccccc
Q 009791 295 NRSILVIEDIDCSV 308 (525)
Q Consensus 295 ~~sIL~iDdID~~~ 308 (525)
+|.+|+||+|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 78999999998874
No 325
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.16 E-value=0.00039 Score=64.74 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=28.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.++|.|+||||||++++.+|..+|+++++.|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5789999999999999999999999998775
No 326
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.12 E-value=0.00047 Score=68.74 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=44.5
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC--CceEEEecCCcCC
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK--FDVFDLQLGNVTR 282 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~--~~i~~l~~~~l~~ 282 (525)
+.++|+.+.++.- ..+...++.+ +-..|++||.||||||||.||-||+++|| .||..+-.+++.+
T Consensus 38 ~g~vGQ~~AReAa-giivdlik~K-------kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 38 AGFVGQENAREAA-GIIVDLIKSK-------KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred cccccchhhhhhh-hHHHHHHHhh-------hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 4567777666532 2222333333 22468999999999999999999999996 5666666666643
No 327
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.00036 Score=63.08 Aligned_cols=41 Identities=27% Similarity=0.569 Sum_probs=32.1
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLR 287 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~ 287 (525)
..+|+.|-||||||+++.++|..+++..+. ++++..+.++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~--isd~vkEn~l~ 48 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIE--ISDLVKENNLY 48 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEe--hhhHHhhhcch
Confidence 469999999999999999999999987765 45554444443
No 328
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.08 E-value=0.0011 Score=74.21 Aligned_cols=50 Identities=34% Similarity=0.418 Sum_probs=39.8
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD 271 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~ 271 (525)
.-|++++|.++.++.+...+. .+++++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 468889998887776554442 12489999999999999999999999754
No 329
>PRK06762 hypothetical protein; Provisional
Probab=97.08 E-value=0.00059 Score=63.18 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=27.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
++-++|+|+||+||||+++.+++.++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 345789999999999999999999965555554
No 330
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.011 Score=58.01 Aligned_cols=126 Identities=10% Similarity=0.062 Sum_probs=93.4
Q ss_pred CcceeeEeCCCC-CcHHHHHHHHHHHcC---------CceEEEecC-------CcCChhHHHHHHHHhC------CCeEE
Q 009791 243 WKRGYLLYGPPG-TGKSSLVAAMANYLK---------FDVFDLQLG-------NVTRDSDLRTLLLSTG------NRSIL 299 (525)
Q Consensus 243 ~~rg~LL~GppG-TGKTsLa~AiA~~l~---------~~i~~l~~~-------~l~~~~~L~~l~~~~~------~~sIL 299 (525)
....||+.|..+ +||.-++.-++..+. -+++.+... ...+-..+|++..... ..-|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 346799999998 999998888777662 456655432 1234456666655442 34599
Q ss_pred EEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCC
Q 009791 300 VIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKER 379 (525)
Q Consensus 300 ~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~ 379 (525)
+|+++|.+- ....+.||..++.- +...++|++|+.++.
T Consensus 94 II~~ae~mt--------------------------------------~~AANALLKtLEEP----P~~t~fILit~~~~~ 131 (263)
T PRK06581 94 IIYSAELMN--------------------------------------LNAANSCLKILEDA----PKNSYIFLITSRAAS 131 (263)
T ss_pred EEechHHhC--------------------------------------HHHHHHHHHhhcCC----CCCeEEEEEeCChhh
Confidence 999999873 34678899998873 456888888889999
Q ss_pred CCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 380 LDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 380 LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
|.|.++. |. .++.+..|....-.++...++.
T Consensus 132 LLpTIrS--RC-q~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 132 IISTIRS--RC-FKINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred CchhHhh--ce-EEEeCCCCCHHHHHHHHHHhcc
Confidence 9999997 75 6789999999888887776664
No 331
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.05 E-value=0.0028 Score=67.64 Aligned_cols=91 Identities=13% Similarity=0.220 Sum_probs=66.7
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR 282 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~ 282 (525)
...+..++|......++++.++.-.. ..-.+||.|..||||..+|+||-+.. +-+++.++|..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~-----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAK-----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhc-----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 34678899988888888887764332 23579999999999999999998776 57999999998842
Q ss_pred h---hHH----HHHHHH----------hCCCeEEEEeccccc
Q 009791 283 D---SDL----RTLLLS----------TGNRSILVIEDIDCS 307 (525)
Q Consensus 283 ~---~~L----~~l~~~----------~~~~sIL~iDdID~~ 307 (525)
+ ++| +-.|.. .....-||+|||-.+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 2 222 222221 235689999999866
No 332
>PRK06547 hypothetical protein; Provisional
Probab=97.05 E-value=0.00066 Score=63.78 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=29.9
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
..+.-+++.|++|||||++++.+|+.++..++.+|
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34567889999999999999999999988877654
No 333
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.04 E-value=0.00053 Score=66.15 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=18.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l 268 (525)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998887777766
No 334
>PRK14530 adenylate kinase; Provisional
Probab=97.04 E-value=0.00057 Score=66.33 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.6
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
-++|.||||+||||+++.||..+++++++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 489999999999999999999999776643
No 335
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.00083 Score=75.07 Aligned_cols=61 Identities=28% Similarity=0.380 Sum_probs=40.6
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEe-cCC---cC----ChhHHHHHHHHh-----CCCeEEEEeccccc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQ-LGN---VT----RDSDLRTLLLST-----GNRSILVIEDIDCS 307 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~-~~~---l~----~~~~L~~l~~~~-----~~~sIL~iDdID~~ 307 (525)
+||.|-||||||.|.+.+++.+-..+|.-- .++ +. .+...-+...++ ..++|.+|||+|.+
T Consensus 322 ILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 322 ILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred EEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 899999999999999999999877776421 111 10 111101111122 36899999999976
No 336
>PRK05973 replicative DNA helicase; Provisional
Probab=97.03 E-value=0.0027 Score=62.62 Aligned_cols=38 Identities=24% Similarity=0.036 Sum_probs=29.2
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
|++...-+|+.|+||+|||+++-.+|.+. |.+++.+++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 66777779999999999999988876654 666555543
No 337
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.02 E-value=0.0019 Score=59.82 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
-.+++.||+|||||+|.+++|+..
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 348999999999999999999865
No 338
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.02 E-value=0.00058 Score=64.24 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=25.3
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
-+++.||||+||||+++.+|..+|+..+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 57899999999999999999999866543
No 339
>PF13245 AAA_19: Part of AAA domain
Probab=97.01 E-value=0.00098 Score=53.90 Aligned_cols=33 Identities=39% Similarity=0.608 Sum_probs=21.7
Q ss_pred eeeEeCCCCCcHH-HHHHHHHHHc------CCceEEEecC
Q 009791 246 GYLLYGPPGTGKS-SLVAAMANYL------KFDVFDLQLG 278 (525)
Q Consensus 246 g~LL~GppGTGKT-sLa~AiA~~l------~~~i~~l~~~ 278 (525)
-+++.|||||||| ++++.++..+ +-.+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3556999999999 5666666655 3445555433
No 340
>PRK02496 adk adenylate kinase; Provisional
Probab=97.00 E-value=0.00054 Score=64.66 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=26.0
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
+++.||||+|||++++.||..++++.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999998776644
No 341
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.00 E-value=0.0029 Score=64.87 Aligned_cols=83 Identities=16% Similarity=0.226 Sum_probs=51.0
Q ss_pred cChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEE----EecCCcCChhHHHHH
Q 009791 214 MEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFD----LQLGNVTRDSDLRTL 289 (525)
Q Consensus 214 g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~----l~~~~l~~~~~L~~l 289 (525)
+++++++.+.+.+..-+.. ..+..+-++|+|+.|+|||++++.|...+|-.... +.+.++... +..
T Consensus 53 ~d~~~~~~l~~~lg~~L~~-------~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~---~f~ 122 (304)
T TIGR01613 53 GDNELIEYLQRVIGYSLTG-------NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH---RFG 122 (304)
T ss_pred CCHHHHHHHHHHHhHHhcC-------CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC---Cch
Confidence 3455565555555433322 14556789999999999999999999988854321 222222110 112
Q ss_pred HHHhCCCeEEEEecccc
Q 009791 290 LLSTGNRSILVIEDIDC 306 (525)
Q Consensus 290 ~~~~~~~sIL~iDdID~ 306 (525)
+.....+-+++.+|++.
T Consensus 123 ~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 123 LARLEGKRAVIGDEVQK 139 (304)
T ss_pred hhhhcCCEEEEecCCCC
Confidence 33345678899999873
No 342
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.00 E-value=0.0014 Score=71.44 Aligned_cols=163 Identities=17% Similarity=0.275 Sum_probs=94.3
Q ss_pred ccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCc--ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecC-C---c--
Q 009791 209 FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWK--RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLG-N---V-- 280 (525)
Q Consensus 209 f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~--rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~-~---l-- 280 (525)
|-+|.|.+.+|.-|.-.+ +.+-..+..-|.+.+ -.+++.|.||||||-+.++.++.+-..+|.---+ + +
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 567778888887774322 222111222122221 2399999999999999999999998887753211 1 1
Q ss_pred --CChhHHHHHHHHh-----CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHH
Q 009791 281 --TRDSDLRTLLLST-----GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGL 353 (525)
Q Consensus 281 --~~~~~L~~l~~~~-----~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 353 (525)
..+++=.+...++ ....|-+|||+|.+-. + + ...+
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~---~-d----------------------------------qvAi 462 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV---K-D----------------------------------QVAI 462 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccCh---H-h----------------------------------HHHH
Confidence 0111111111222 3578999999998721 0 0 0112
Q ss_pred hhhhc---------CCCCCCCCceEEEEecCCCC-------------CCCccccCCCceeeEE-EcCCCCHHHHHHHHHH
Q 009791 354 LNFID---------GLWSSCGDERIIVFTTNHKE-------------RLDPALLRPGRMDMHI-HMSYCGPYGFRLLAAN 410 (525)
Q Consensus 354 Ln~id---------gl~s~~~~~~ivI~TTN~~~-------------~LDpaLlRpGRfd~~I-~~~~p~~~~r~~L~~~ 410 (525)
+..|+ |+..+-+-.--|++++|... +++++++. |||..+ -+..|++..=..|+++
T Consensus 463 hEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~h 540 (764)
T KOG0480|consen 463 HEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARH 540 (764)
T ss_pred HHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHH
Confidence 22221 22111111224677777542 46899999 999764 5689999888888887
Q ss_pred HhCC
Q 009791 411 YLGI 414 (525)
Q Consensus 411 ~l~~ 414 (525)
.+..
T Consensus 541 Ild~ 544 (764)
T KOG0480|consen 541 ILDL 544 (764)
T ss_pred HHHH
Confidence 7754
No 343
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00059 Score=62.60 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=25.7
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
+-+.|||||||||+++-+|.++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999999885
No 344
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=96.99 E-value=0.054 Score=51.26 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=91.7
Q ss_pred eEEEEecCCCCCccHHHHHHHHHHhcccCC-CcceeEeeecC----------------------CCceEEEeccCCCeeE
Q 009791 58 LTLVIEDSNGIARNQIFEAAEAYLSAKIGP-SIERLKICKTP----------------------NEKVITIRLEKNEQII 114 (525)
Q Consensus 58 ~t~~i~e~~~~~~n~~~~a~~~yl~~~~~~-~~~~l~~~~~~----------------------~~~~~~~~l~~~~~~~ 114 (525)
.|+.|+. .+++|+.+-.+|+..... ..+++.+.... +...+.+.+..| ...
T Consensus 27 ~sv~I~~-----~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h~ 100 (187)
T PF08740_consen 27 SSVEIPS-----DDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-THW 100 (187)
T ss_pred EEEEECC-----CCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CEE
Confidence 5666765 458999999999987544 35666665522 356788888888 777
Q ss_pred EeecceEEEEEEEEEecCCCCCCCCCCCCCceEEEEEEcCcchhhHHHhhhHHHHHHHHHhhcccceEEEEecccCCCCC
Q 009791 115 DSFRGVQLRWRFALVEAADGKGNSHSMRPEKRLFELTFHQTHKDMVLNSYLPHVIELAKDMKDKTRVLKMYTLHRVPDYD 194 (525)
Q Consensus 115 d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~~~~v~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (525)
..|+|. |..+.+.......+... ..+.+.++|++..+..+ ++.++|.+..+... +..+....+|.....
T Consensus 101 F~y~G~---~~~~~R~~~~~~~~~~~-~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~--~~~~~~t~Iy~~~~~---- 169 (187)
T PF08740_consen 101 FWYKGR---WFWFSRQRESNSYNSWT-GAPDETLTLSCLGRSPK-PLKDLLEEAREYYL--KKQKGKTTIYRADGS---- 169 (187)
T ss_pred EEECCE---EEEEEEEeccccccccC-CCCceEEEEEEecCCHH-HHHHHHHHHHHHHH--HhcCCcEEEEeCCCC----
Confidence 899994 55555544222121111 34578999999888765 67776666655443 344445668987532
Q ss_pred CCcceeccccCCCCcccc
Q 009791 195 AIRWDSVKLEHPATFDTL 212 (525)
Q Consensus 195 ~~~w~~v~~~~~~~f~~l 212 (525)
+..|+.+...+++++++|
T Consensus 170 ~~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 170 EYRWRRVASRPKRPLSTV 187 (187)
T ss_pred CCCCcCCCCcCCCCCCCC
Confidence 126999888888899886
No 345
>PRK13764 ATPase; Provisional
Probab=96.98 E-value=0.0026 Score=70.70 Aligned_cols=26 Identities=38% Similarity=0.779 Sum_probs=24.0
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+.++|++||||+||||+++|+++++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999999885
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.98 E-value=0.0023 Score=58.21 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=41.9
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCC-----------ceEEEecCCcCChhHHHHHHH---HhCCCeEEEEeccccc
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKF-----------DVFDLQLGNVTRDSDLRTLLL---STGNRSILVIEDIDCS 307 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~-----------~i~~l~~~~l~~~~~L~~l~~---~~~~~sIL~iDdID~~ 307 (525)
.....+.|.||+|+|||+|+++|++.+.. .+..+ .. .+..+.+++.. -+.+|.|+++||-..-
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~--~~-lS~G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYF--EQ-LSGGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEE--cc-CCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 34456889999999999999999998631 11111 11 22333333322 2358999999997765
Q ss_pred cC
Q 009791 308 VD 309 (525)
Q Consensus 308 ~~ 309 (525)
++
T Consensus 101 LD 102 (144)
T cd03221 101 LD 102 (144)
T ss_pred CC
Confidence 43
No 347
>PRK14528 adenylate kinase; Provisional
Probab=96.97 E-value=0.00065 Score=64.55 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=26.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
-+++.||||+|||++++.+|..++++.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 478999999999999999999999876543
No 348
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.97 E-value=0.0012 Score=69.42 Aligned_cols=89 Identities=25% Similarity=0.414 Sum_probs=58.3
Q ss_pred HHHhhhHHHHHHHHHhhc-------------ccceEEEEecccCCCCCCCcceeccccCC--CCccccccChHHHHHHHH
Q 009791 160 VLNSYLPHVIELAKDMKD-------------KTRVLKMYTLHRVPDYDAIRWDSVKLEHP--ATFDTLAMEPDLKATIME 224 (525)
Q Consensus 160 v~~~~l~~v~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~w~~v~~~~~--~~f~~l~g~~~~K~~i~~ 224 (525)
-++.+...|++.|+...+ +-+.+++-...+. -+..|.-....+- .++++..+++.+++.|.+
T Consensus 185 ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPP---fSd~~EITavRPvvk~~ledY~L~dkl~eRL~e 261 (604)
T COG1855 185 ELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPP---FSDRWEITAVRPVVKLSLEDYGLSDKLKERLEE 261 (604)
T ss_pred HHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecCC---CCCceEEEEEeeeEEechhhcCCCHHHHHHHHh
Confidence 567788888888765421 1122222222111 1224554332222 378899999998888766
Q ss_pred HHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 225 DLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 225 ~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
. -+|+|+.||||.||||+|+|+|..+.
T Consensus 262 r------------------aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 262 R------------------AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred h------------------hcceEEecCCCCChhHHHHHHHHHHH
Confidence 3 25999999999999999999999884
No 349
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.95 E-value=0.0025 Score=59.67 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=45.0
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC-----------------------hhHHHHHHHHhCCCeEEEEec
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR-----------------------DSDLRTLLLSTGNRSILVIED 303 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~-----------------------~~~L~~l~~~~~~~sIL~iDd 303 (525)
+|+.|+||+|||+++..+|...+.+++++......+ ..+|.+.+...+.+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 589999999999999999988887888776554321 124455454434566899988
Q ss_pred ccccc
Q 009791 304 IDCSV 308 (525)
Q Consensus 304 ID~~~ 308 (525)
+..+.
T Consensus 82 lt~~~ 86 (169)
T cd00544 82 LTLWV 86 (169)
T ss_pred HhHHH
Confidence 87664
No 350
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.95 E-value=0.0032 Score=60.42 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=19.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMA 265 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA 265 (525)
+.++|.||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 351
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.95 E-value=0.011 Score=63.54 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=27.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEecCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQLGN 279 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~~~ 279 (525)
++-++|.||+|+||||++..||..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 3468899999999999999998765 34566555543
No 352
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.94 E-value=0.0057 Score=64.01 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
-.|+.||||||||+|++.+|+.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 379999999999999999999873
No 353
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.93 E-value=0.0012 Score=52.12 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=23.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc-CCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL-KFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l-~~~i~~l 275 (525)
+.+.|+||+|||++++++++.+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 5689999999999999999996 2444444
No 354
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.93 E-value=0.0058 Score=58.67 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=40.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHH-H----cCCceE--------------EEecCCc-C--------ChhHHHHHHHHhCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMAN-Y----LKFDVF--------------DLQLGNV-T--------RDSDLRTLLLSTGN 295 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~-~----l~~~i~--------------~l~~~~l-~--------~~~~L~~l~~~~~~ 295 (525)
++-++|.||.|+|||++++.|+. . .|..+. .+...+. . ....+..++.....
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~ 108 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATP 108 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccC
Confidence 34689999999999999999993 2 232211 1111110 0 11234445555678
Q ss_pred CeEEEEecccccc
Q 009791 296 RSILVIEDIDCSV 308 (525)
Q Consensus 296 ~sIL~iDdID~~~ 308 (525)
|.++++||.-.-+
T Consensus 109 ~~llllDEp~~gl 121 (202)
T cd03243 109 RSLVLIDELGRGT 121 (202)
T ss_pred CeEEEEecCCCCC
Confidence 9999999987654
No 355
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.92 E-value=0.00074 Score=63.35 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=26.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
+-++|.||||+||||++++++..++..++.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 4688999999999999999999988766544
No 356
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.92 E-value=0.00075 Score=66.36 Aligned_cols=29 Identities=21% Similarity=0.591 Sum_probs=26.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
++|.||||+||||+++.+|..++++.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999998776654
No 357
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.89 E-value=0.00079 Score=65.11 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=25.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
+++.||||+|||++++.+|..+|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 6899999999999999999999876654
No 358
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.89 E-value=0.0041 Score=62.52 Aligned_cols=86 Identities=15% Similarity=0.281 Sum_probs=53.7
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC---CceEEEe------
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK---FDVFDLQ------ 276 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~------ 276 (525)
+.+++++++.++..+.+.+.+. .....+++.||+|+||||+++++..++. ..++.++
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 3578888888777665543331 1123478999999999999999988774 3344442
Q ss_pred cCCc-----C--ChhHHHHHHHHh--CCCeEEEEeccc
Q 009791 277 LGNV-----T--RDSDLRTLLLST--GNRSILVIEDID 305 (525)
Q Consensus 277 ~~~l-----~--~~~~L~~l~~~~--~~~sIL~iDdID 305 (525)
+..+ . ....+..++..+ ..|.+|+|.||-
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1111 0 011233333333 479999999987
No 359
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.89 E-value=0.0017 Score=57.50 Aligned_cols=66 Identities=24% Similarity=0.226 Sum_probs=46.0
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCC--------------------ceEEEecCCcCChhHHHHH--HHHhCCCeEE
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKF--------------------DVFDLQLGNVTRDSDLRTL--LLSTGNRSIL 299 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~--------------------~i~~l~~~~l~~~~~L~~l--~~~~~~~sIL 299 (525)
+...-++|+|+=|+|||++++++|..+|. +++.+|+-.+.+..++-.+ +......+|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~ 92 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGIC 92 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEE
Confidence 34456999999999999999999999963 4566677777666655443 2233568999
Q ss_pred EEeccccc
Q 009791 300 VIEDIDCS 307 (525)
Q Consensus 300 ~iDdID~~ 307 (525)
+||=-|.+
T Consensus 93 ~IEW~e~~ 100 (123)
T PF02367_consen 93 VIEWPERL 100 (123)
T ss_dssp EEESGGGG
T ss_pred EEECcccc
Confidence 99865554
No 360
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.00064 Score=63.08 Aligned_cols=29 Identities=28% Similarity=0.606 Sum_probs=26.0
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
++++|.|||||||+++.++ .+|++++.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 6899999999999999999 9999887653
No 361
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.87 E-value=0.00088 Score=65.04 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=25.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
++++||||+|||++++.||..+++..+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 7899999999999999999999876665
No 362
>PLN02200 adenylate kinase family protein
Probab=96.87 E-value=0.0011 Score=65.49 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=28.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV 280 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l 280 (525)
+.-+++.||||||||++++.+|..+|+. .++++++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdl 77 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDL 77 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHH
Confidence 4458899999999999999999999865 3555443
No 363
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.86 E-value=0.0056 Score=58.04 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=39.5
Q ss_pred eeEeCCCCCcHHHHHHHHHH-----HcCCce---------E-----EEecCCcC---------ChhHHHHHHHHhCCCeE
Q 009791 247 YLLYGPPGTGKSSLVAAMAN-----YLKFDV---------F-----DLQLGNVT---------RDSDLRTLLLSTGNRSI 298 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~-----~l~~~i---------~-----~l~~~~l~---------~~~~L~~l~~~~~~~sI 298 (525)
++|+||.|+|||++++.++- +.|..+ + .+...+.. .-..+..++..+..|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999982 234322 1 11111110 01235555556668999
Q ss_pred EEEecccccc
Q 009791 299 LVIEDIDCSV 308 (525)
Q Consensus 299 L~iDdID~~~ 308 (525)
+++||+-.-.
T Consensus 82 lllDEp~~g~ 91 (185)
T smart00534 82 VLLDELGRGT 91 (185)
T ss_pred EEEecCCCCC
Confidence 9999988654
No 364
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.85 E-value=0.0034 Score=58.24 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
....-+.|.||.|+|||+|++.|++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334558899999999999999999876
No 365
>PRK04182 cytidylate kinase; Provisional
Probab=96.84 E-value=0.00096 Score=62.20 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=26.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
++|.|+||||||++++++|..+|+++++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7899999999999999999999998876
No 366
>PRK14527 adenylate kinase; Provisional
Probab=96.81 E-value=0.00097 Score=63.45 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=26.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
+.-++++||||+||||+++.+|..+++..+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3458999999999999999999999876543
No 367
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.0025 Score=66.90 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcC
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.|++||||+|||+|+++|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 88999999999999999999774
No 368
>PRK09354 recA recombinase A; Provisional
Probab=96.81 E-value=0.0043 Score=64.54 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=45.1
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCc---------------------CChhHHHHH---HHH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNV---------------------TRDSDLRTL---LLS 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l---------------------~~~~~L~~l---~~~ 292 (525)
|++..+-+++|||||||||+|+-.++... |..++.++...- .+..+...+ +..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67777779999999999999998766433 555555554331 011111111 222
Q ss_pred hCCCeEEEEeccccccC
Q 009791 293 TGNRSILVIEDIDCSVD 309 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~~ 309 (525)
...+.+||||-|-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 34688999999988753
No 369
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.80 E-value=0.00091 Score=61.84 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=20.9
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
|.|+|+||||||||+++++.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 679999999999999999999 87765
No 370
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.80 E-value=0.0031 Score=59.53 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=39.5
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCc---eEE--EecCCc-----CChhHHHHHH---HHhCCCeEEEEecccccc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFD---VFD--LQLGNV-----TRDSDLRTLL---LSTGNRSILVIEDIDCSV 308 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~---i~~--l~~~~l-----~~~~~L~~l~---~~~~~~sIL~iDdID~~~ 308 (525)
...-+.|.||.|+|||||++.|++.+..+ +.. .+.+.+ .+...-+++. .-+.+|.++++||--.-+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 34457899999999999999999876311 110 001101 1222222222 223589999999977554
No 371
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.80 E-value=0.0037 Score=64.01 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=40.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC-----CceEEEecC-Cc-------------CChhHHHHHHHHh--CCCeEEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK-----FDVFDLQLG-NV-------------TRDSDLRTLLLST--GNRSILVIE 302 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~-----~~i~~l~~~-~l-------------~~~~~L~~l~~~~--~~~sIL~iD 302 (525)
++++|+.||+|+||||+++|+++++. ..++.++-. ++ .....+.+++..+ .+|-+|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 56899999999999999999998872 333333211 00 0111445555443 368888888
Q ss_pred ccc
Q 009791 303 DID 305 (525)
Q Consensus 303 dID 305 (525)
||-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 875
No 372
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.80 E-value=0.0043 Score=59.96 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=40.0
Q ss_pred cceeeEeCCCCCcHHHHHHHHHH-----HcCCceEE--------------EecCC-cCC--------hhHHHHHHHHhCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMAN-----YLKFDVFD--------------LQLGN-VTR--------DSDLRTLLLSTGN 295 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~-----~l~~~i~~--------------l~~~~-l~~--------~~~L~~l~~~~~~ 295 (525)
.+-++|.||.|+|||++++.++. ++|+.+-. +...+ +.. -.++..++..+.+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 35689999999999999999973 33433211 01110 100 1234445555678
Q ss_pred CeEEEEeccccc
Q 009791 296 RSILVIEDIDCS 307 (525)
Q Consensus 296 ~sIL~iDdID~~ 307 (525)
|+++++||+..-
T Consensus 109 ~~lvllDE~~~g 120 (204)
T cd03282 109 DSLVLIDELGRG 120 (204)
T ss_pred CcEEEeccccCC
Confidence 999999998743
No 373
>PRK04040 adenylate kinase; Provisional
Probab=96.79 E-value=0.0012 Score=62.95 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=25.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc--CCceE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL--KFDVF 273 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l--~~~i~ 273 (525)
.-++++|+|||||||+++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 458899999999999999999999 55553
No 374
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.79 E-value=0.0021 Score=61.71 Aligned_cols=35 Identities=37% Similarity=0.368 Sum_probs=26.7
Q ss_pred HHHHHHhC--CCCcceeeEeCCCCCcHHHHHHHHHHH
Q 009791 233 KEFYKRVG--RAWKRGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 233 ~~~y~~~g--~~~~rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.+.-+++| +|.+.=+|+.|+.|||||-|++.+|-=
T Consensus 15 delDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG 51 (235)
T COG2874 15 DELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYG 51 (235)
T ss_pred HHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHH
Confidence 34445554 666666889999999999999999853
No 375
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.78 E-value=0.0044 Score=61.75 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=38.5
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCc---eEEEecCCcCChhHHHHHHHHhCCCeEEEEecccc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFD---VFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDC 306 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~---i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~ 306 (525)
...-+++.||+|||||+|++.|++.+... ++.+=+..-....++.+++... .++++..+.|.
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I--~~~~v~~~~~~ 79 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV--KGEVIASTFDE 79 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh--ccEEEEecCCC
Confidence 34458999999999999999999988643 2211110111112444444444 56777777763
No 376
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.78 E-value=0.00083 Score=58.69 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.9
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l 268 (525)
++|.|+|||||||+++.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999988
No 377
>PRK01184 hypothetical protein; Provisional
Probab=96.77 E-value=0.0012 Score=62.36 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
-++|.||||+||||+++ ++.++|+++++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999887 889999887654
No 378
>PRK06696 uridine kinase; Validated
Probab=96.76 E-value=0.0045 Score=60.45 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=32.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCCh
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRD 283 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~ 283 (525)
+.-+.+.|+||+||||+++.||..+ |.+++.+.+.+....
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 4567799999999999999999999 677777776666433
No 379
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.00092 Score=63.15 Aligned_cols=33 Identities=36% Similarity=0.715 Sum_probs=26.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV 280 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l 280 (525)
-+++.||||+||||+|+.||+. +++..++...+
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence 3789999999999999999999 55555554443
No 380
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.76 E-value=0.0012 Score=60.97 Aligned_cols=29 Identities=28% Similarity=0.633 Sum_probs=26.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
+.++|+||+|||++++.+|+.+++++++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 67999999999999999999999987754
No 381
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.018 Score=60.68 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 216 PDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 216 ~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.++++.+.+.+...+..+..+ ...++-++|.||+|+||||++..||..+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 345666666665555432111 1224678999999999999999999877
No 382
>PRK04296 thymidine kinase; Provisional
Probab=96.75 E-value=0.0084 Score=57.14 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=23.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc---CCceEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL---KFDVFDL 275 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l---~~~i~~l 275 (525)
-.|++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999998888766 5555544
No 383
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.73 E-value=0.00089 Score=61.11 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=22.4
Q ss_pred EeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 249 LYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 249 L~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
|.||||+|||++++.||..+|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999765443
No 384
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.72 E-value=0.0079 Score=58.88 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=42.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHH-Hc----CCce---------E---EEecC---CcC--------ChhHHHHHHHHhCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMAN-YL----KFDV---------F---DLQLG---NVT--------RDSDLRTLLLSTGN 295 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~-~l----~~~i---------~---~l~~~---~l~--------~~~~L~~l~~~~~~ 295 (525)
.+-++|.||.|+|||++.+.++. .+ |..+ + ..... ++. .-.++..++..+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999987 22 2211 1 11111 111 11456677778889
Q ss_pred CeEEEEecccc
Q 009791 296 RSILVIEDIDC 306 (525)
Q Consensus 296 ~sIL~iDdID~ 306 (525)
+++++|||+..
T Consensus 111 ~sLvllDE~~~ 121 (222)
T cd03287 111 RSLVILDELGR 121 (222)
T ss_pred CeEEEEccCCC
Confidence 99999999874
No 385
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.71 E-value=0.0054 Score=64.56 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=38.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC-----CceEEEecC-C----------------cCC-hhHHHHHHHHh--CCCeEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK-----FDVFDLQLG-N----------------VTR-DSDLRTLLLST--GNRSILV 300 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~-----~~i~~l~~~-~----------------l~~-~~~L~~l~~~~--~~~sIL~ 300 (525)
.+|+.||+|+||||+++|+++++. ..++.++-. + +.. ...+...+..+ ..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 478999999999999999998873 345554311 1 100 11233333332 3799999
Q ss_pred Eeccc
Q 009791 301 IEDID 305 (525)
Q Consensus 301 iDdID 305 (525)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99986
No 386
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.71 E-value=0.0061 Score=57.20 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.3
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
+...-+.|.||+|+|||+|+++||+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344568899999999999999999876
No 387
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.70 E-value=0.14 Score=52.80 Aligned_cols=47 Identities=17% Similarity=0.061 Sum_probs=28.6
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCcCCCc-ccHH-HHHHHHhhcCCCHHHH
Q 009791 393 HIHMSYCGPYGFRLLAANYLGITDCEH-KLVA-EIETLLKTINITPAQV 439 (525)
Q Consensus 393 ~I~~~~p~~~~r~~L~~~~l~~~~~~~-~~~~-~i~~l~~~~~~tpadi 439 (525)
.|+++..+.++.+.++..|....-..+ ...+ -.+.+.-..+..|.++
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 578999999999999998876542222 1222 2233333346666655
No 388
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.70 E-value=0.014 Score=59.99 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=69.7
Q ss_pred ceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEE
Q 009791 198 WDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFD 274 (525)
Q Consensus 198 w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~ 274 (525)
...+...+...|+.+++.....+.+++....+-. ....+|+.|..||||-.+|+|--... ..+|+.
T Consensus 192 ~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFla 260 (511)
T COG3283 192 LQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLA 260 (511)
T ss_pred HhhcccccccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeE
Confidence 3344556778899999988877777765544422 12348999999999999999854332 689999
Q ss_pred EecCCcCChhHHHHHHHHh------------CCCeEEEEeccccc
Q 009791 275 LQLGNVTRDSDLRTLLLST------------GNRSILVIEDIDCS 307 (525)
Q Consensus 275 l~~~~l~~~~~L~~l~~~~------------~~~sIL~iDdID~~ 307 (525)
++|..+-.+..-.++|-.+ .+..-+|+|||-.+
T Consensus 261 lNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEm 305 (511)
T COG3283 261 LNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM 305 (511)
T ss_pred eecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhc
Confidence 9999996554444555333 34567888988755
No 389
>PRK06851 hypothetical protein; Provisional
Probab=96.68 E-value=0.02 Score=60.11 Aligned_cols=38 Identities=39% Similarity=0.566 Sum_probs=31.3
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCC
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGN 279 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~ 279 (525)
...+-|+|.|+||||||+|++.++.++ |+++....|+.
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 345669999999999999999999887 77777666654
No 390
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.68 E-value=0.0026 Score=55.29 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
++++++||+|+|||+++.+.+..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999998888887766
No 391
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.67 E-value=0.0015 Score=66.50 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=25.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc-CCceEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL-KFDVFD 274 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l-~~~i~~ 274 (525)
.-++|.|||||||||+++.++..+ +..+++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 457899999999999999999998 554444
No 392
>PLN02199 shikimate kinase
Probab=96.67 E-value=0.0025 Score=64.54 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=30.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.+.++|.|.+|+|||++++.+|+.+|+++++.|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 458999999999999999999999999999876
No 393
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.66 E-value=0.002 Score=59.00 Aligned_cols=30 Identities=33% Similarity=0.476 Sum_probs=25.4
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc---CCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL---KFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~ 276 (525)
+++.|+||+|||+++++++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6799999999999999999998 66655554
No 394
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.64 E-value=0.0089 Score=64.73 Aligned_cols=69 Identities=23% Similarity=0.281 Sum_probs=46.2
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC--------------------ChhHHHHHHHH--hC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT--------------------RDSDLRTLLLS--TG 294 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~--------------------~~~~L~~l~~~--~~ 294 (525)
|++...-+||+|+||+|||+|+..+|..+ +..+++++..+-. .+..+..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67777779999999999999999998765 3456666543210 11122222222 23
Q ss_pred CCeEEEEecccccc
Q 009791 295 NRSILVIEDIDCSV 308 (525)
Q Consensus 295 ~~sIL~iDdID~~~ 308 (525)
++.+|+||.|-.+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 68899999998764
No 395
>PTZ00035 Rad51 protein; Provisional
Probab=96.63 E-value=0.007 Score=62.99 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=24.0
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
|++...-+.++||||||||+|+..+|..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 6777777889999999999999988753
No 396
>PRK14526 adenylate kinase; Provisional
Probab=96.63 E-value=0.0018 Score=62.94 Aligned_cols=28 Identities=29% Similarity=0.699 Sum_probs=24.7
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
++|.||||+||||+++.+|..+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999998866543
No 397
>PRK08233 hypothetical protein; Provisional
Probab=96.59 E-value=0.0022 Score=59.97 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
-+.+.|+||+||||+++.+|.+++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 466889999999999999999885
No 398
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.58 E-value=0.003 Score=63.64 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=34.4
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCc----------CChhHHHHHHHH-----hCCCeEEEEeccccc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNV----------TRDSDLRTLLLS-----TGNRSILVIEDIDCS 307 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l----------~~~~~L~~l~~~-----~~~~sIL~iDdID~~ 307 (525)
++|+|.||+|||++++.|+.++ +..+..++-..+ ..+..+|..+.. .....|+++|+.--+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 6899999999999999999986 466666553222 123444444432 245689999987744
No 399
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.57 E-value=0.0017 Score=61.48 Aligned_cols=29 Identities=34% Similarity=0.497 Sum_probs=25.0
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
-+.|.||+|+||||+++.|+..++.+++.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 47899999999999999999988766544
No 400
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.57 E-value=0.002 Score=61.91 Aligned_cols=34 Identities=38% Similarity=0.529 Sum_probs=27.0
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN 279 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~ 279 (525)
-|+++||+|||||.++-++|+.+|.+++.+|--.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq 36 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ 36 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEeccee
Confidence 4789999999999999999999999999987544
No 401
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0089 Score=55.77 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
+...-+.|.||+|+|||+|++.||+.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344558899999999999999999986
No 402
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.0019 Score=58.87 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=30.2
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+.+-.+++.|+.||||||++++++.+|+++|++-|
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD 44 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD 44 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccc
Confidence 44556889999999999999999999999988643
No 403
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.55 E-value=0.0074 Score=69.59 Aligned_cols=64 Identities=14% Similarity=0.310 Sum_probs=40.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHH-----cCCc----------eEEEecCCcCC--------------hhHHHHHHHHhC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANY-----LKFD----------VFDLQLGNVTR--------------DSDLRTLLLSTG 294 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~-----l~~~----------i~~l~~~~l~~--------------~~~L~~l~~~~~ 294 (525)
.+.++|+||.++|||++.+.++-. .|++ +++--++.+.+ -..+..++..+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 357899999999999999998743 2322 22111111111 123344455557
Q ss_pred CCeEEEEeccccc
Q 009791 295 NRSILVIEDIDCS 307 (525)
Q Consensus 295 ~~sIL~iDdID~~ 307 (525)
.|+++++||+-.-
T Consensus 407 ~~sLvLlDE~~~G 419 (782)
T PRK00409 407 KNSLVLFDELGAG 419 (782)
T ss_pred cCcEEEecCCCCC
Confidence 8999999998754
No 404
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.54 E-value=0.012 Score=55.65 Aligned_cols=25 Identities=36% Similarity=0.705 Sum_probs=22.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
++-++|.||+|+||+++++.|+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999999986
No 405
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.53 E-value=0.0063 Score=60.86 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=55.8
Q ss_pred HhCCCCcceeeEeCCCCCcHHHHHHHHH------HHcCCceEEEecCCcCChhHHHHHHHHh-----------------C
Q 009791 238 RVGRAWKRGYLLYGPPGTGKSSLVAAMA------NYLKFDVFDLQLGNVTRDSDLRTLLLST-----------------G 294 (525)
Q Consensus 238 ~~g~~~~rg~LL~GppGTGKTsLa~AiA------~~l~~~i~~l~~~~l~~~~~L~~l~~~~-----------------~ 294 (525)
++.+..+..+||.||.|.|||.|++-|- +++.-.++.++|..+..+..+..+|-.. .
T Consensus 202 rva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsa 281 (531)
T COG4650 202 RVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSA 281 (531)
T ss_pred HHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccC
Confidence 3444445569999999999999999885 3457889999999998888777777432 2
Q ss_pred CCeEEEEecccccc
Q 009791 295 NRSILVIEDIDCSV 308 (525)
Q Consensus 295 ~~sIL~iDdID~~~ 308 (525)
...+||+|||-.+.
T Consensus 282 dggmlfldeigelg 295 (531)
T COG4650 282 DGGMLFLDEIGELG 295 (531)
T ss_pred CCceEehHhhhhcC
Confidence 45799999998774
No 406
>PRK10646 ADP-binding protein; Provisional
Probab=96.52 E-value=0.011 Score=54.23 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=43.9
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCC--------------------ceEEEecCCcCChhHHHHH-HHHh-CCCeEEEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKF--------------------DVFDLQLGNVTRDSDLRTL-LLST-GNRSILVI 301 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~--------------------~i~~l~~~~l~~~~~L~~l-~~~~-~~~sIL~i 301 (525)
..-++|.|+=|+|||++++++|+.+|. ++|.+|+-.+.+..++..+ |.+. ....|++|
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtlv~~Y~~~~~~l~H~DlYRL~~~~el~~lG~~e~~~~~~i~~I 107 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLV 107 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEeeEEEeeCCCCCEEEEeeccCCCHHHHHHcchHHhhcCCCEEEE
Confidence 345899999999999999999999973 3555666666555554443 2222 35678888
Q ss_pred ecccc
Q 009791 302 EDIDC 306 (525)
Q Consensus 302 DdID~ 306 (525)
|=.|.
T Consensus 108 EW~e~ 112 (153)
T PRK10646 108 EWPQQ 112 (153)
T ss_pred ECCcc
Confidence 85543
No 407
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.51 E-value=0.0025 Score=63.33 Aligned_cols=31 Identities=39% Similarity=0.576 Sum_probs=25.8
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
++|.|+||+||||+++++|.++ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999988 456666543
No 408
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.50 E-value=0.01 Score=55.42 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..-+.|.||.|+|||+|+++||+.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3448899999999999999999876
No 409
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.46 E-value=0.0086 Score=56.45 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.3
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHH
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~ 266 (525)
...-+.|.||.|+|||||.+++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 344578999999999999999964
No 410
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.44 E-value=0.0028 Score=59.75 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=25.9
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+.|+|+||+||||+++.+++ +|+++++.|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 57999999999999999999 888887665
No 411
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.44 E-value=0.0065 Score=60.71 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=39.1
Q ss_pred hCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHHHHHHH
Q 009791 239 VGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDLRTLLL 291 (525)
Q Consensus 239 ~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L~~l~~ 291 (525)
-|++..+.+|++|+||||||+++...+... |.+++.+...+ +..++.+.+.
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~~ 71 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENAR 71 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHHH
Confidence 367888889999999999999998887655 67788887665 3455555554
No 412
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.43 E-value=0.013 Score=64.63 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.3
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
++++..+|+.||+|||||||.+|||+..
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3455569999999999999999999876
No 413
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.43 E-value=0.0031 Score=60.55 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCce
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDV 272 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i 272 (525)
+.-+++.|+||+|||++++.+|..++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34688999999999999999999988654
No 414
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.42 E-value=0.0054 Score=63.91 Aligned_cols=61 Identities=28% Similarity=0.470 Sum_probs=42.2
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhCCCeEEEEecccc
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDC 306 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~ 306 (525)
|+|.+..+++||||+||||+++-.+-+.++-.++..- |+.=+-.|+....--|-+|||+-.
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~------Ns~ShFWLqPL~d~Ki~llDDAT~ 318 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFV------NSKSHFWLQPLADAKIALLDDATY 318 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GG------GTTSCGGGGGGCT-SSEEEEEE-H
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEec------CCCCcccccchhcCcEEEEcCCcc
Confidence 7899999999999999999999999999988877531 111011223333445888898653
No 415
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.42 E-value=0.03 Score=64.54 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 57899999999999999999876
No 416
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.42 E-value=0.011 Score=61.63 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.3
Q ss_pred CcceeeEeCCCCCcHHHHHHHHH
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMA 265 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA 265 (525)
+|+|++|||.-|||||+|.--.-
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy 135 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFY 135 (467)
T ss_pred CCceEEEecccCcchhHHHHHHh
Confidence 58999999999999999987654
No 417
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.41 E-value=0.065 Score=52.98 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=33.4
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 367 ERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 367 ~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
.+-+|+++-..-.|||.++. =++..+-+. -+....+.|++++..
T Consensus 128 ~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~ 171 (241)
T PF04665_consen 128 NISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMNI 171 (241)
T ss_pred ceEEEEEeeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhccc
Confidence 46788888888999999866 788888776 466777777776643
No 418
>PRK06851 hypothetical protein; Provisional
Probab=96.41 E-value=0.028 Score=59.01 Aligned_cols=26 Identities=38% Similarity=0.646 Sum_probs=23.6
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..+-++|.|+||||||++++.++..+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~ 54 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEF 54 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999877
No 419
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.38 E-value=0.0037 Score=62.61 Aligned_cols=39 Identities=23% Similarity=0.116 Sum_probs=31.2
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
|++....+|++||||||||+++..+|.+. |.++..+++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 67777889999999999999999876643 5677666654
No 420
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.36 E-value=0.039 Score=53.90 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=25.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcC-----CceEEEecCCc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLK-----FDVFDLQLGNV 280 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~-----~~i~~l~~~~l 280 (525)
+-|.||+|+||||+++.|++.+. ..+..+.+...
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 45789999999999999999884 23444444443
No 421
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.36 E-value=0.0033 Score=69.67 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=31.7
Q ss_pred CCCcce-eeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 241 RAWKRG-YLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 241 ~~~~rg-~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
+|.+++ +.|.|.||+||||+.+.+|+.|+++++++|-
T Consensus 2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 344433 7799999999999999999999999999873
No 422
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.35 E-value=0.0082 Score=61.64 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=36.4
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---------CCceEEEecCCcCChhHHHHHH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---------KFDVFDLQLGNVTRDSDLRTLL 290 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---------~~~i~~l~~~~l~~~~~L~~l~ 290 (525)
|++...-++++||||||||+++..+|... +-.++.++...-.....+.+.+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 67777778999999999999999998663 2367777765533344444443
No 423
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.34 E-value=0.0062 Score=62.85 Aligned_cols=146 Identities=23% Similarity=0.261 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhCCCeE
Q 009791 219 KATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSI 298 (525)
Q Consensus 219 K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~~~sI 298 (525)
.+.|.+.|..... ++|.+|.+||-||-.|||||||+|+-+.+|-....+++.. +.|.--|--+-..-.
T Consensus 138 ~~~i~~iL~~lv~--------N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfm 205 (417)
T PF06431_consen 138 DDVILEILKCLVE--------NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFM 205 (417)
T ss_dssp HHHHHHHHHHHHH--------TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SE
T ss_pred HHHHHHHHHHHhc--------CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEE
Confidence 3445555554443 4688899999999999999999999999987777666653 334433433446678
Q ss_pred EEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCC-----CCce-----
Q 009791 299 LVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSC-----GDER----- 368 (525)
Q Consensus 299 L~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~-----~~~~----- 368 (525)
++|||+---. ..+. .-..+..-..|..|-..+||-..-. -..+
T Consensus 206 VvFEDVKGq~------~~~~---------------------~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFP 258 (417)
T PF06431_consen 206 VVFEDVKGQP------SDNK---------------------DLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFP 258 (417)
T ss_dssp EEEEEE--SS------TTTT---------------------T----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE---
T ss_pred EEEEecCCCc------CCCC---------------------CCCCCCCcccchhhhhhccCceeechhhhhcccccccCC
Confidence 8899876221 0000 0112333455677777888753210 0001
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHH
Q 009791 369 IIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLL 407 (525)
Q Consensus 369 ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L 407 (525)
--|.|.|.- .||..+.- ||-..+.|.. ....++.|
T Consensus 259 PgIvTmNeY-~iP~Tv~v--Rf~~~~~F~~-k~~l~~~L 293 (417)
T PF06431_consen 259 PGIVTMNEY-KIPQTVKV--RFCKVLDFRP-KPNLRKSL 293 (417)
T ss_dssp -EEEEESS--B--HHHHT--TEEEEEE-----HHHHHHH
T ss_pred CceEeeccc-cCCcceee--eeEeeEeccc-cHHHHHHH
Confidence 346788863 57888887 9999888863 44444433
No 424
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.33 E-value=0.016 Score=56.63 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=42.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc-----CC---------ceEEEecCCc------CC--------hhHHHHHHHHhCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL-----KF---------DVFDLQLGNV------TR--------DSDLRTLLLSTGN 295 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l-----~~---------~i~~l~~~~l------~~--------~~~L~~l~~~~~~ 295 (525)
.+.++|+||.|.|||++.+.++... |+ ++++--++.+ .. -.++..++..+..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999887642 32 1111101111 10 1456677788889
Q ss_pred CeEEEEecccc
Q 009791 296 RSILVIEDIDC 306 (525)
Q Consensus 296 ~sIL~iDdID~ 306 (525)
|++++|||+-.
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999764
No 425
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.32 E-value=0.0037 Score=61.03 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=29.1
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~ 278 (525)
|++....+|+.||||||||+|+..++... |..++.+.+.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 77888889999999999999998766433 6666666543
No 426
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.011 Score=57.46 Aligned_cols=24 Identities=38% Similarity=0.728 Sum_probs=21.6
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..|+.|||||||||+.+-||..+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhh
Confidence 478999999999999999998873
No 427
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.31 E-value=0.0099 Score=61.37 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=40.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEe-cCCc------------CChhHHHHHHHHh--CCCeEEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQ-LGNV------------TRDSDLRTLLLST--GNRSILVIED 303 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~-~~~l------------~~~~~L~~l~~~~--~~~sIL~iDd 303 (525)
+.++|+.|++|+||||+++|++.++ +..++.++ ..++ ...-.+.+++..+ .+|.+|++-|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999999886 23344433 1111 0112344444433 4688999988
Q ss_pred cc
Q 009791 304 ID 305 (525)
Q Consensus 304 ID 305 (525)
|-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 74
No 428
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.30 E-value=0.0053 Score=60.60 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=35.4
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHH---cCCceEEEecCCcCChhHHHHHH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANY---LKFDVFDLQLGNVTRDSDLRTLL 290 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~---l~~~i~~l~~~~l~~~~~L~~l~ 290 (525)
|++....+|++||||||||+|+..++.+ -|.+++.+.+.+ +...+.+-+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 7888888999999999999999876543 266777776543 334444433
No 429
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.30 E-value=0.0097 Score=55.07 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.8
Q ss_pred ceeeEeCCCCCcHHH-HHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSS-LVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTs-La~AiA~~l~ 269 (525)
+.+++.||+|||||. ++..+...+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 578999999999999 6666665554
No 430
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.29 E-value=0.0048 Score=57.71 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+.-++|.|+||+||||+++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999885
No 431
>PLN02674 adenylate kinase
Probab=96.28 E-value=0.004 Score=61.72 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=25.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
...++|.||||+||||+++.||..+++..+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 345899999999999999999999886443
No 432
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.28 E-value=0.0072 Score=60.93 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=23.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.++++.||||+|||||.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5799999999999999999999884
No 433
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.28 E-value=0.0031 Score=58.98 Aligned_cols=22 Identities=36% Similarity=0.779 Sum_probs=20.1
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l 268 (525)
++|.|+||+||||+++.++.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 434
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.27 E-value=0.016 Score=58.50 Aligned_cols=52 Identities=31% Similarity=0.584 Sum_probs=38.5
Q ss_pred ceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcce-eeEeCCCCCcHHHHHHHHHHHcC
Q 009791 198 WDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRG-YLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 198 w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg-~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.+-++ ....+|+.++..+-+++ +. ..++| +|+.||.|+||||.++||-++++
T Consensus 98 lR~Ip-~~i~~~e~LglP~i~~~-~~------------------~~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 98 LRLIP-SKIPTLEELGLPPIVRE-LA------------------ESPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred EeccC-ccCCCHHHcCCCHHHHH-HH------------------hCCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 34444 55678999988775544 21 13567 66779999999999999999996
No 435
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.27 E-value=0.011 Score=54.84 Aligned_cols=64 Identities=23% Similarity=0.417 Sum_probs=39.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc---------------CCceEEEe----cC--CcC-Ch---hHHHHHHHHhC--CCe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL---------------KFDVFDLQ----LG--NVT-RD---SDLRTLLLSTG--NRS 297 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l---------------~~~i~~l~----~~--~l~-~~---~~L~~l~~~~~--~~s 297 (525)
+-.++.||.|+|||+++++++-.+ ++.+-..+ .. .+. .. ..+...+...+ .|.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 478899999999999999986443 22222222 11 111 11 23444444444 789
Q ss_pred EEEEecccccc
Q 009791 298 ILVIEDIDCSV 308 (525)
Q Consensus 298 IL~iDdID~~~ 308 (525)
++++||+..-.
T Consensus 102 llllDEp~~gl 112 (162)
T cd03227 102 LYILDEIDRGL 112 (162)
T ss_pred EEEEeCCCCCC
Confidence 99999998654
No 436
>PRK14529 adenylate kinase; Provisional
Probab=96.27 E-value=0.0032 Score=61.61 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=24.9
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
++|.||||+||||+++.||..+++..+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 789999999999999999999997765
No 437
>PF13479 AAA_24: AAA domain
Probab=96.27 E-value=0.0033 Score=61.10 Aligned_cols=59 Identities=31% Similarity=0.502 Sum_probs=37.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCC-------------cCChhHHHHHHHHh----CCCeEEEEeccccc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN-------------VTRDSDLRTLLLST----GNRSILVIEDIDCS 307 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~-------------l~~~~~L~~l~~~~----~~~sIL~iDdID~~ 307 (525)
-+|||||||+|||+++..+-+- =+++.+-+. +.+-.++.+.+... ..=-.|+||-|+.+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~k~---l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLPKP---LFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred EEEEECCCCCCHHHHHHhCCCe---EEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 5899999999999999988221 122333331 12335566666443 23459999998866
No 438
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.25 E-value=0.069 Score=53.22 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..+.-++|.|.+|+|||||+.+|.+.-
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 445679999999999999999998753
No 439
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.065 Score=57.12 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=26.0
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLG 278 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~ 278 (525)
+.-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 4458899999999999999999754 3445444433
No 440
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.25 E-value=0.0054 Score=57.31 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
+.-+.|.|+||+|||++++++|..+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999987
No 441
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.24 E-value=0.0071 Score=65.02 Aligned_cols=83 Identities=23% Similarity=0.396 Sum_probs=55.9
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcce-eeEeCCCCCcHHHHHHHHHHHcCCceE---EEe-----
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRG-YLLYGPPGTGKSSLVAAMANYLKFDVF---DLQ----- 276 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg-~LL~GppGTGKTsLa~AiA~~l~~~i~---~l~----- 276 (525)
.-+|+.+++.+...+.+.+.+. -|.| +|+.||.|+|||+...++-++++.+-. .++
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 3478999999988887766553 2557 567799999999999999999965433 221
Q ss_pred -cCCc---CC--------hhHHHHHHHHhCCCeEEEEeccc
Q 009791 277 -LGNV---TR--------DSDLRTLLLSTGNRSILVIEDID 305 (525)
Q Consensus 277 -~~~l---~~--------~~~L~~l~~~~~~~sIL~iDdID 305 (525)
...+ .- ..-||.++ ...|-||.+.||-
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~L--RqDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAIL--RQDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHh--ccCCCeEEEeccC
Confidence 1111 11 12233222 2479999999987
No 442
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.22 E-value=0.013 Score=66.93 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=44.0
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHH---HcCCceEEEecCCc---------------------CChhHHHHHHH---H
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMAN---YLKFDVFDLQLGNV---------------------TRDSDLRTLLL---S 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~---~l~~~i~~l~~~~l---------------------~~~~~L~~l~~---~ 292 (525)
|++..+-++++||||||||+|+..++. ..|-.+..++...- .+.+.+..++. .
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 677778899999999999999965433 23445555543321 11122222222 2
Q ss_pred hCCCeEEEEeccccccC
Q 009791 293 TGNRSILVIEDIDCSVD 309 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~~ 309 (525)
...+.+|+||-|..+..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 24688999999998863
No 443
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.22 E-value=0.012 Score=59.17 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=47.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh----hHHHHHHHHhC---CCeEEEEeccc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD----SDLRTLLLSTG---NRSILVIEDID 305 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~----~~L~~l~~~~~---~~sIL~iDdID 305 (525)
+...||.|.+||||.++++-.|.-.++.++.+..+.-.+. .+|+.++..+. .+++++|+|-+
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCC
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcc
Confidence 3458999999999999999999889999999987764433 45666666553 68999998865
No 444
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=96.22 E-value=0.022 Score=62.18 Aligned_cols=90 Identities=22% Similarity=0.372 Sum_probs=53.4
Q ss_pred cccccc-ChHHHHHHHHHHHHHHHhHHHHHHhC-CCCcceeeEeCCCCCcHHHHHHHHHHHcCC-ceEEEecCCcCChhH
Q 009791 209 FDTLAM-EPDLKATIMEDLDRFVRRKEFYKRVG-RAWKRGYLLYGPPGTGKSSLVAAMANYLKF-DVFDLQLGNVTRDSD 285 (525)
Q Consensus 209 f~~l~g-~~~~K~~i~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GppGTGKTsLa~AiA~~l~~-~i~~l~~~~l~~~~~ 285 (525)
++++.. ++++..-+.+.+- |...| ..|...+.||||-|+|||+++..|.+.+|. ++-.+.++.+.....
T Consensus 201 L~~~~~~d~el~~ll~~i~g--------~~l~g~~~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~~~~ 272 (517)
T COG3378 201 LDRVAGGDPELRNLLQRIIG--------ASLTGRVSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEADDR 272 (517)
T ss_pred HHHhhcCCHHHHHHHHHHHh--------heecCcccceeEEEEEcCCCCChHHHHHHHHHHhccchhccccHHHhhhhcc
Confidence 455555 5555444433332 22223 457889999999999999999999999974 333344433332111
Q ss_pred HHHHHHHhCCCeEEEEecccc
Q 009791 286 LRTLLLSTGNRSILVIEDIDC 306 (525)
Q Consensus 286 L~~l~~~~~~~sIL~iDdID~ 306 (525)
=+.-+...-..+++..+|.+.
T Consensus 273 ~~~~~A~Lvg~~~v~~~E~~k 293 (517)
T COG3378 273 HPFGLAALVGKRLVTVSETEK 293 (517)
T ss_pred CcchHHHhhCceEEEecCccc
Confidence 112223333567777787774
No 445
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.025 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
--+.+.||.|+|||||.+.||..+.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~ 53 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLR 53 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccC
Confidence 3477899999999999999998873
No 446
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.21 E-value=0.0036 Score=58.66 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
-+++.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998764
No 447
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.20 E-value=0.011 Score=64.71 Aligned_cols=86 Identities=20% Similarity=0.354 Sum_probs=55.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcce-eeEeCCCCCcHHHHHHHHHHHcC---CceEEEec---
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRG-YLLYGPPGTGKSSLVAAMANYLK---FDVFDLQL--- 277 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg-~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~~--- 277 (525)
.+.+|+++++.++..+.+...+. .++| +|+.||+|+||||+++++.+++. .+++.++-
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE 281 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE 281 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee
Confidence 34588999988887766655332 2456 68999999999999999888774 34554421
Q ss_pred ---CCc-----CC--hhHHHHHHHHh--CCCeEEEEeccc
Q 009791 278 ---GNV-----TR--DSDLRTLLLST--GNRSILVIEDID 305 (525)
Q Consensus 278 ---~~l-----~~--~~~L~~l~~~~--~~~sIL~iDdID 305 (525)
..+ .. .......+..+ ..|-||+|.||-
T Consensus 282 ~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 282 YQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred eecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 111 00 01222333322 579999999987
No 448
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.018 Score=53.87 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=22.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..-+.|.||.|+|||+|++.||+.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999875
No 449
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.20 E-value=0.011 Score=57.70 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=39.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHH-----HcCCce---------EEEecCCcC-------Ch-------hHHHHHHHHhCCC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMAN-----YLKFDV---------FDLQLGNVT-------RD-------SDLRTLLLSTGNR 296 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~-----~l~~~i---------~~l~~~~l~-------~~-------~~L~~l~~~~~~~ 296 (525)
+-++|.||.|+|||++.+.+|. ..+.++ +.--...+. .. ..+..++..+.+|
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 4688999999999999999974 223221 110011111 00 1355666667899
Q ss_pred eEEEEeccc
Q 009791 297 SILVIEDID 305 (525)
Q Consensus 297 sIL~iDdID 305 (525)
+++++||.-
T Consensus 111 ~llllDEp~ 119 (216)
T cd03284 111 SLVLLDEIG 119 (216)
T ss_pred eEEEEecCC
Confidence 999999975
No 450
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.19 E-value=0.015 Score=62.55 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=29.4
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGN 279 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~ 279 (525)
.|.-++|+|+||+||||++..+|..+ |..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 46779999999999999999999887 45555555443
No 451
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.0077 Score=56.23 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=31.0
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNV 280 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l 280 (525)
+..+.|.|.+|+||||+|.|++..| |+.+|.+|...+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 4467799999999999999999987 788888875543
No 452
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.19 E-value=0.006 Score=56.30 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=27.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGN 279 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~ 279 (525)
.-+.|.|.||+|||+||+++...| +.+++.+|...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~ 40 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDN 40 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcc
Confidence 347899999999999999999877 56677666443
No 453
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.19 E-value=0.012 Score=62.06 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+++.||||||||+|+++|++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3499999999999999999999864
No 454
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.18 E-value=0.016 Score=52.75 Aligned_cols=63 Identities=25% Similarity=0.284 Sum_probs=41.9
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcC--------------------CceEEEecCCcCChhHHHH--HHHHhCCCeEEE
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLK--------------------FDVFDLQLGNVTRDSDLRT--LLLSTGNRSILV 300 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~--------------------~~i~~l~~~~l~~~~~L~~--l~~~~~~~sIL~ 300 (525)
...-++|.|+=|+|||+++++++..++ .++|.+|+-.+.+.+++-. +.......+|.+
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~Y~~~~~~lyH~DlYRl~d~ee~~~lg~~e~~~~~gv~l 103 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLVEEYEEGRLPLYHFDLYRLSDPEELDELGLDEYFDGDGICL 103 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeeeehhhcCCCCcEEEEeeeccCChHHhHhcCHHHHhCCCcEEE
Confidence 344588999999999999999999996 3466666666654433211 112222377888
Q ss_pred Eeccc
Q 009791 301 IEDID 305 (525)
Q Consensus 301 iDdID 305 (525)
||=-+
T Consensus 104 IEW~e 108 (149)
T COG0802 104 IEWPE 108 (149)
T ss_pred EECcc
Confidence 87444
No 455
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.18 E-value=0.0082 Score=56.54 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFD 271 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~ 271 (525)
-+.+.||+|+||||+++++++.++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 47899999999999999999998864
No 456
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.18 E-value=0.12 Score=51.12 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=88.9
Q ss_pred CCcce-eeEeCCCCCcHHHHHHHHHHHcCCc---eEEEecCCcC-------------C-------------hhHHHHHHH
Q 009791 242 AWKRG-YLLYGPPGTGKSSLVAAMANYLKFD---VFDLQLGNVT-------------R-------------DSDLRTLLL 291 (525)
Q Consensus 242 ~~~rg-~LL~GppGTGKTsLa~AiA~~l~~~---i~~l~~~~l~-------------~-------------~~~L~~l~~ 291 (525)
...+| +.++|+-|||||.+++|+...++-+ ++.++-..+. . +..|..++.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 33455 4589999999999999888777532 2233322221 1 123444445
Q ss_pred HhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEE
Q 009791 292 STGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIV 371 (525)
Q Consensus 292 ~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI 371 (525)
+-.+|-++++||.+.+.. ..-..+.-|.|.-++... ...++.+
T Consensus 128 ~g~r~v~l~vdEah~L~~-----------------------------------~~le~Lrll~nl~~~~~~--~l~ivL~ 170 (269)
T COG3267 128 KGKRPVVLMVDEAHDLND-----------------------------------SALEALRLLTNLEEDSSK--LLSIVLI 170 (269)
T ss_pred hCCCCeEEeehhHhhhCh-----------------------------------hHHHHHHHHHhhcccccC--ceeeeec
Confidence 556789999999997742 111223333343333211 1223333
Q ss_pred EecCCCCCCCc--------cccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccH--HHHHHHHhhcCCCHHHHHH
Q 009791 372 FTTNHKERLDP--------ALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLV--AEIETLLKTINITPAQVAE 441 (525)
Q Consensus 372 ~TTN~~~~LDp--------aLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~--~~i~~l~~~~~~tpadi~~ 441 (525)
+ +|+ |.| .+.+ |++..|++++-+.++-...++..|+..+...+++ ..+..+.....-.|.-|.+
T Consensus 171 G---qp~-L~~~lr~~~l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~ 244 (269)
T COG3267 171 G---QPK-LRPRLRLPVLRELEQ--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINN 244 (269)
T ss_pred C---Ccc-cchhhchHHHHhhhh--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHH
Confidence 3 222 222 2335 8998899999999977777777776543233332 2333333333336777766
Q ss_pred HH
Q 009791 442 QF 443 (525)
Q Consensus 442 ~l 443 (525)
++
T Consensus 245 ~~ 246 (269)
T COG3267 245 LA 246 (269)
T ss_pred HH
Confidence 54
No 457
>PRK12338 hypothetical protein; Provisional
Probab=96.18 E-value=0.0045 Score=63.54 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=25.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCce
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDV 272 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i 272 (525)
|.-+++.|+|||||||+++++|..++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 45788999999999999999999998754
No 458
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.16 E-value=0.017 Score=59.64 Aligned_cols=62 Identities=27% Similarity=0.495 Sum_probs=40.0
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEe-cCCc------------CChhHHHHHHHHh--CCCeEEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQ-LGNV------------TRDSDLRTLLLST--GNRSILVIED 303 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~-~~~l------------~~~~~L~~l~~~~--~~~sIL~iDd 303 (525)
++.+++.||+|+|||++++|++.++ ...++.++ ..++ ..+-.+.+++..+ .+|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5689999999999999999999874 12233221 1111 0122345555443 4689999998
Q ss_pred cc
Q 009791 304 ID 305 (525)
Q Consensus 304 ID 305 (525)
|-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 76
No 459
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.15 E-value=0.013 Score=57.97 Aligned_cols=63 Identities=21% Similarity=0.396 Sum_probs=40.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc-----CCce---------E---EEecC---CcCC--------hhHHHHHHHHhCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL-----KFDV---------F---DLQLG---NVTR--------DSDLRTLLLSTGN 295 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i---------~---~l~~~---~l~~--------~~~L~~l~~~~~~ 295 (525)
.+.++|+||..+|||++++.+|-.. |+.+ + ..... ++.. -.++..++..+.+
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 122 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE 122 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred eeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence 3678999999999999999998543 4221 1 11111 1111 1456777788889
Q ss_pred CeEEEEecccc
Q 009791 296 RSILVIEDIDC 306 (525)
Q Consensus 296 ~sIL~iDdID~ 306 (525)
+++|+|||+-.
T Consensus 123 ~sLvliDE~g~ 133 (235)
T PF00488_consen 123 KSLVLIDELGR 133 (235)
T ss_dssp TEEEEEESTTT
T ss_pred ceeeecccccC
Confidence 99999999874
No 460
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.14 E-value=0.0047 Score=59.20 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=27.1
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+.|+|++|+|||++++.+++.+|+++++.|
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 779999999999999999998899888654
No 461
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.13 E-value=0.0086 Score=66.98 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=24.3
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
+++..-+.+.||+|+|||||++.+++.+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455669999999999999999999876
No 462
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.12 E-value=0.01 Score=52.99 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.4
Q ss_pred eeEeCCCCCcHHHHHHHHHHH
Q 009791 247 YLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~ 267 (525)
+.|.||+|+|||+|++++.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 578999999999999999876
No 463
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.12 E-value=0.027 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.6
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l 268 (525)
++|.|+||+|||+|++++++..
T Consensus 4 i~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998543
No 464
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.12 E-value=0.012 Score=60.74 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---------CCceEEEecCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---------KFDVFDLQLGN 279 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---------~~~i~~l~~~~ 279 (525)
|++...-++++||||||||+++..+|-.. +..++.++...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 67777789999999999999999998653 34677777654
No 465
>PLN02165 adenylate isopentenyltransferase
Probab=96.11 E-value=0.005 Score=63.50 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=29.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLG 278 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~ 278 (525)
.-+.|.||+|+|||+|+.+||..++..++..|--
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3588999999999999999999999877766544
No 466
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.10 E-value=0.0042 Score=57.74 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.3
Q ss_pred eCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 250 YGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 250 ~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.|||||||||+++++|..++..+++-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998655544
No 467
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.09 E-value=0.014 Score=58.99 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=28.0
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
.++-++|.||||+||||++..+|..+ |..+..+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35678899999999999999999877 5555555544
No 468
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.07 E-value=0.0056 Score=58.67 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=29.2
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHc-CCceEEEecCCc
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYL-KFDVFDLQLGNV 280 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l-~~~i~~l~~~~l 280 (525)
..|.-+++.|+||+|||+++..+...+ +-+++.++...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 456789999999999999999999988 667777765554
No 469
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.06 E-value=0.01 Score=61.32 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=26.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
+.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4568899999999999999999887 444554443
No 470
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.06 E-value=0.0061 Score=47.16 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
..+|+||.|+|||||+-||.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999997654
No 471
>PLN02459 probable adenylate kinase
Probab=96.04 E-value=0.0069 Score=60.54 Aligned_cols=28 Identities=21% Similarity=0.528 Sum_probs=24.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
-++|.||||+||||+++.+|..+++..+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~i 58 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHI 58 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3788999999999999999999986544
No 472
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.04 E-value=0.0055 Score=58.37 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=24.1
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc-CCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL-KFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l-~~~i~~l~ 276 (525)
+.+.|+|||||||+++.++..+ +..++.+|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 4678999999999999999998 45444443
No 473
>PRK13808 adenylate kinase; Provisional
Probab=96.03 E-value=0.0053 Score=63.43 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=24.9
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
++|+||||+|||++++.||..+|+..++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is 30 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 7899999999999999999999875544
No 474
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.02 E-value=0.04 Score=50.16 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.9
Q ss_pred eeEeCCCCCcHHHHHHHHHHH
Q 009791 247 YLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~ 267 (525)
+++.|+||+|||+|++++.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999864
No 475
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.02 E-value=0.019 Score=59.03 Aligned_cols=29 Identities=17% Similarity=0.467 Sum_probs=25.1
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+..+..+++.||+|+||||+++++++++.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 34467899999999999999999998873
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.02 E-value=0.012 Score=64.23 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=38.2
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHH----cCCceEEEecCCcCChhHHHHHHHH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANY----LKFDVFDLQLGNVTRDSDLRTLLLS 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~----l~~~i~~l~~~~l~~~~~L~~l~~~ 292 (525)
|++..+.+|+.||||||||+|+..++.+ .|-+.+.+.+. ++..++.+-...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~~~~~~ 71 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDIIKNARS 71 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHHHHHHH
Confidence 7888899999999999999999988543 25788887765 345555555443
No 477
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.01 E-value=0.0065 Score=58.11 Aligned_cols=30 Identities=33% Similarity=0.340 Sum_probs=26.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
-+.|+|++||||||+++.++. +|+++++.|
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 478999999999999999998 888877765
No 478
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.01 E-value=0.0085 Score=58.87 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=32.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLGN 279 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~~ 279 (525)
|+++..-++|.|+||+|||+++..+|..+ +.+++.+++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 77777789999999999999998887654 77887777654
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.99 E-value=0.013 Score=64.17 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=29.1
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEe
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQ 276 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~ 276 (525)
|++....+|+.||||||||+|+..++... |-+++++.
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67777889999999999999999888755 44444443
No 480
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.99 E-value=0.019 Score=59.89 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=38.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC----CceEEEec-CC--------------cC-ChhHHHHHHHHh--CCCeEEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK----FDVFDLQL-GN--------------VT-RDSDLRTLLLST--GNRSILVIE 302 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~----~~i~~l~~-~~--------------l~-~~~~L~~l~~~~--~~~sIL~iD 302 (525)
.-+|+.||+|+||||+++++.+++. ..++.++- .+ +. ....+.+.+..+ ..|-+|+++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 3578999999999999999998774 23333311 00 00 111234444332 479999999
Q ss_pred ccc
Q 009791 303 DID 305 (525)
Q Consensus 303 dID 305 (525)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 985
No 481
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.99 E-value=0.016 Score=62.17 Aligned_cols=29 Identities=34% Similarity=0.371 Sum_probs=26.6
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFD 271 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~ 271 (525)
.|.-++++|+||||||+++..+|..++..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 46789999999999999999999999985
No 482
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.98 E-value=0.0087 Score=57.66 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+.-+.|.||+|||||||+++|+..++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999999883
No 483
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.98 E-value=0.036 Score=49.85 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.9
Q ss_pred eeEeCCCCCcHHHHHHHHHHH
Q 009791 247 YLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~ 267 (525)
+++.||||+|||+|+.++.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999753
No 484
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.97 E-value=0.012 Score=65.76 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=24.7
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
++...-+.+.||.|+|||||++.|++.+.
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 34455699999999999999999999873
No 485
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.96 E-value=0.0085 Score=55.84 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=27.7
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNV 280 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l 280 (525)
+++.||||+|||+++..+|..+ +..+..+++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6789999999999999999876 566777766543
No 486
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.96 E-value=0.027 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=20.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
-..++||.|+|||++..||+-.++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 356999999999999999976663
No 487
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.95 E-value=0.0067 Score=57.70 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.0
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.++-+.|.||+|+|||+|++++....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45668899999999999999998876
No 488
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.94 E-value=0.033 Score=50.56 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHH
Q 009791 247 YLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~ 267 (525)
+++.|+||+|||+|+.++++.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999864
No 489
>PRK04328 hypothetical protein; Provisional
Probab=95.93 E-value=0.01 Score=59.11 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=35.4
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHH---cCCceEEEecCCcCChhHHHHHHH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANY---LKFDVFDLQLGNVTRDSDLRTLLL 291 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~---l~~~i~~l~~~~l~~~~~L~~l~~ 291 (525)
|++....+|++||||||||+|+..++.+ -|.+.+.+++.+ +...+.+.+.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~~~ 71 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRNMR 71 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHHHH
Confidence 6777888999999999999998876543 256777776554 3334444433
No 490
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.93 E-value=0.012 Score=61.74 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..-+++.||+|+||||++++|++++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999887
No 491
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.92 E-value=0.0065 Score=58.31 Aligned_cols=25 Identities=36% Similarity=0.592 Sum_probs=22.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
|+-++|.||+|+||||.+.-+|.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4678999999999999999999887
No 492
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.92 E-value=0.0073 Score=57.25 Aligned_cols=26 Identities=27% Similarity=0.673 Sum_probs=23.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
...+++.||+|+||||+++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56799999999999999999998764
No 493
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.91 E-value=0.014 Score=59.40 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=26.4
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFD 271 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~ 271 (525)
.|--+++.|++|||||++|..+|..++.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45679999999999999999999999877
No 494
>PRK06761 hypothetical protein; Provisional
Probab=95.91 E-value=0.0077 Score=60.95 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=27.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
+-+++.||||+||||+++.++..+....+.++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 358899999999999999999999766555543
No 495
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.91 E-value=0.0052 Score=57.51 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.2
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
-++|.||+|+|||++++.|++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4789999999999999999997654
No 496
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.90 E-value=0.012 Score=65.88 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=24.5
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+++..-+.+.||+|+|||||++.+++.+.
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 34455699999999999999999998773
No 497
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.89 E-value=0.011 Score=57.67 Aligned_cols=38 Identities=24% Similarity=0.135 Sum_probs=29.3
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
|++...-++++||||||||+|+..++.+. +..++.+++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67777789999999999999999877532 445555554
No 498
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.89 E-value=0.014 Score=61.15 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=22.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-+++.|.||||||.|+-.+|..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 457899999999999999999998
No 499
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.87 E-value=0.015 Score=64.18 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=24.5
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
++...-+.+.||+|+|||||++.+++...
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34455699999999999999999998763
No 500
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.87 E-value=0.0088 Score=56.47 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=25.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcC---CceEEEecCC
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLK---FDVFDLQLGN 279 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~~~~ 279 (525)
+.+.|+||||||++++.|+..++ .++..+++.+
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd 37 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh
Confidence 57899999999999999999874 4444444433
Done!