Query 009791
Match_columns 525
No_of_seqs 447 out of 3643
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_I 26S protease regulatory 100.0 5.5E-43 1.9E-47 365.9 21.1 236 203-466 175-426 (437)
2 4b4t_J 26S protease regulatory 100.0 4.2E-43 1.4E-47 365.8 20.0 233 205-465 143-391 (405)
3 4b4t_L 26S protease subunit RP 100.0 3.3E-42 1.1E-46 364.2 22.7 237 204-468 175-427 (437)
4 4b4t_M 26S protease regulatory 100.0 1.1E-42 3.6E-47 367.6 18.4 239 203-469 174-428 (434)
5 4b4t_K 26S protease regulatory 100.0 1.8E-41 6.1E-46 358.0 21.3 213 204-444 166-388 (428)
6 3cf2_A TER ATPase, transitiona 100.0 2.9E-42 1E-46 387.8 15.4 269 205-504 199-500 (806)
7 4b4t_H 26S protease regulatory 100.0 3.4E-41 1.2E-45 355.6 19.8 213 204-444 203-424 (467)
8 3cf2_A TER ATPase, transitiona 100.0 3.8E-36 1.3E-40 338.2 7.0 212 205-444 472-692 (806)
9 3hu3_A Transitional endoplasmi 100.0 1.3E-32 4.3E-37 296.6 15.5 252 205-487 199-483 (489)
10 2x8a_A Nuclear valosin-contain 100.0 7.8E-31 2.7E-35 262.8 18.0 211 205-444 5-227 (274)
11 3cf0_A Transitional endoplasmi 100.0 7.7E-30 2.6E-34 258.7 19.1 213 204-444 9-230 (301)
12 2ce7_A Cell division protein F 100.0 9.8E-30 3.4E-34 272.4 19.6 252 205-485 11-282 (476)
13 3h4m_A Proteasome-activating n 100.0 1.2E-28 4E-33 246.7 21.1 236 204-467 11-262 (285)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.2E-28 7.5E-33 250.5 22.8 208 205-444 7-224 (322)
15 1lv7_A FTSH; alpha/beta domain 100.0 3.6E-28 1.2E-32 240.1 21.0 212 204-444 6-226 (257)
16 3eie_A Vacuolar protein sortin 100.0 1.7E-28 6E-33 251.0 18.5 210 203-444 11-229 (322)
17 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.4E-28 8.3E-33 240.8 18.8 213 206-444 2-223 (262)
18 2qp9_X Vacuolar protein sortin 100.0 3.1E-28 1.1E-32 252.7 17.4 209 204-444 45-262 (355)
19 2dhr_A FTSH; AAA+ protein, hex 100.0 9E-28 3.1E-32 258.6 19.8 252 205-485 26-297 (499)
20 1ypw_A Transitional endoplasmi 99.9 1.5E-27 5.2E-32 271.5 17.4 269 205-504 199-500 (806)
21 2zan_A Vacuolar protein sortin 99.9 1E-26 3.5E-31 248.2 20.2 209 204-444 128-346 (444)
22 2r62_A Cell division protease 99.9 3.4E-28 1.2E-32 241.4 5.0 214 204-444 5-227 (268)
23 3d8b_A Fidgetin-like protein 1 99.9 5.9E-26 2E-30 235.6 19.6 210 204-444 78-296 (357)
24 1ixz_A ATP-dependent metallopr 99.9 1.3E-25 4.5E-30 221.3 19.9 212 204-444 10-230 (254)
25 3vfd_A Spastin; ATPase, microt 99.9 8.4E-26 2.9E-30 237.0 18.8 212 202-444 107-327 (389)
26 3b9p_A CG5977-PA, isoform A; A 99.9 7.6E-25 2.6E-29 220.5 18.4 210 204-444 15-234 (297)
27 1iy2_A ATP-dependent metallopr 99.9 1.3E-24 4.3E-29 217.5 18.5 212 204-444 34-254 (278)
28 1ypw_A Transitional endoplasmi 99.9 8.9E-28 3E-32 273.5 -5.4 212 205-444 472-692 (806)
29 3t15_A Ribulose bisphosphate c 99.9 2.6E-24 8.7E-29 217.4 16.5 171 238-440 30-221 (293)
30 3pfi_A Holliday junction ATP-d 99.8 7.7E-19 2.6E-23 179.7 21.3 197 197-444 18-228 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 4.3E-20 1.5E-24 197.6 9.3 212 205-443 32-260 (456)
32 1hqc_A RUVB; extended AAA-ATPa 99.8 5.2E-18 1.8E-22 172.1 19.6 192 204-444 6-212 (324)
33 1g41_A Heat shock protein HSLU 99.8 7E-20 2.4E-24 193.8 5.1 163 210-408 15-188 (444)
34 3syl_A Protein CBBX; photosynt 99.8 6.2E-18 2.1E-22 170.6 17.2 170 209-415 29-220 (309)
35 2chg_A Replication factor C sm 99.7 2.2E-16 7.5E-21 149.5 19.5 178 204-440 11-201 (226)
36 1d2n_A N-ethylmaleimide-sensit 99.7 1.8E-16 6.1E-21 157.5 19.5 215 210-464 33-265 (272)
37 3uk6_A RUVB-like 2; hexameric 99.7 1.4E-16 4.8E-21 164.5 17.3 185 205-443 38-303 (368)
38 3u61_B DNA polymerase accessor 99.7 1.6E-16 5.6E-21 161.6 17.1 158 196-412 14-178 (324)
39 1ofh_A ATP-dependent HSL prote 99.7 7.6E-17 2.6E-21 162.0 14.3 173 210-410 15-213 (310)
40 1njg_A DNA polymerase III subu 99.7 1.2E-15 4.2E-20 145.9 19.4 181 204-442 17-227 (250)
41 3hws_A ATP-dependent CLP prote 99.7 1.7E-17 5.9E-22 172.0 5.6 175 211-411 16-268 (363)
42 1sxj_A Activator 1 95 kDa subu 99.7 9.2E-16 3.2E-20 166.5 17.1 173 196-413 27-223 (516)
43 1jbk_A CLPB protein; beta barr 99.7 1.3E-16 4.5E-21 147.5 8.6 153 204-408 16-194 (195)
44 3m6a_A ATP-dependent protease 99.6 4.5E-16 1.5E-20 169.9 12.7 159 209-412 80-266 (543)
45 2chq_A Replication factor C sm 99.6 2.1E-15 7E-20 152.0 16.7 155 203-415 10-177 (319)
46 3pvs_A Replication-associated 99.6 3.7E-15 1.3E-19 158.8 17.2 150 204-414 20-180 (447)
47 1jr3_A DNA polymerase III subu 99.6 2E-14 6.9E-19 148.2 20.1 153 204-413 10-192 (373)
48 1iqp_A RFCS; clamp loader, ext 99.6 8.7E-15 3E-19 147.9 17.0 184 197-441 14-210 (327)
49 1sxj_B Activator 1 37 kDa subu 99.6 1.1E-14 3.9E-19 146.8 17.3 157 197-413 10-180 (323)
50 1sxj_D Activator 1 41 kDa subu 99.6 6.5E-15 2.2E-19 150.7 15.6 158 197-414 26-207 (353)
51 4fcw_A Chaperone protein CLPB; 99.6 6.3E-15 2.2E-19 148.4 14.4 160 210-413 17-230 (311)
52 2r44_A Uncharacterized protein 99.6 4.4E-15 1.5E-19 151.5 12.1 153 207-414 24-200 (331)
53 3bos_A Putative DNA replicatio 99.6 4.2E-15 1.4E-19 143.1 10.8 185 204-441 22-215 (242)
54 1r6b_X CLPA protein; AAA+, N-t 99.6 5.8E-14 2E-18 159.1 21.6 159 204-413 180-363 (758)
55 1in4_A RUVB, holliday junction 99.6 1.3E-13 4.3E-18 141.4 21.5 191 204-443 19-223 (334)
56 2v1u_A Cell division control p 99.6 1.1E-14 3.9E-19 150.2 13.5 161 207-413 16-215 (387)
57 2p65_A Hypothetical protein PF 99.6 2.3E-15 7.8E-20 139.0 7.2 146 204-400 16-187 (187)
58 1l8q_A Chromosomal replication 99.6 1.3E-14 4.4E-19 147.7 13.4 189 203-443 4-208 (324)
59 1um8_A ATP-dependent CLP prote 99.6 5.7E-14 2E-18 146.0 18.4 174 211-410 22-284 (376)
60 2qby_B CDC6 homolog 3, cell di 99.5 4.5E-14 1.5E-18 146.2 14.7 151 210-413 20-211 (384)
61 1g8p_A Magnesium-chelatase 38 99.5 9.9E-14 3.4E-18 141.9 17.0 154 204-412 18-232 (350)
62 2z4s_A Chromosomal replication 99.5 3.6E-14 1.2E-18 151.0 13.2 188 203-443 98-306 (440)
63 1sxj_E Activator 1 40 kDa subu 99.5 1E-13 3.5E-18 142.2 16.1 181 203-441 7-235 (354)
64 3pxi_A Negative regulator of g 99.5 6E-14 2.1E-18 159.0 14.7 155 210-413 491-676 (758)
65 1qvr_A CLPB protein; coiled co 99.5 4.2E-14 1.4E-18 162.3 12.6 158 204-413 164-346 (854)
66 1r6b_X CLPA protein; AAA+, N-t 99.5 1.5E-13 5.1E-18 155.7 16.4 154 211-413 459-667 (758)
67 3pxg_A Negative regulator of g 99.5 1.6E-13 5.6E-18 147.0 15.1 147 204-414 174-340 (468)
68 1sxj_C Activator 1 40 kDa subu 99.5 4.9E-13 1.7E-17 137.0 17.8 158 196-413 13-183 (340)
69 3te6_A Regulatory protein SIR3 99.5 1.2E-13 4E-18 140.5 12.8 129 242-413 43-212 (318)
70 1fnn_A CDC6P, cell division co 99.5 4.3E-13 1.5E-17 138.7 17.4 159 208-413 15-207 (389)
71 2qby_A CDC6 homolog 1, cell di 99.5 9.7E-14 3.3E-18 143.0 11.3 160 206-413 16-211 (386)
72 3pxi_A Negative regulator of g 99.5 6.3E-13 2.2E-17 150.6 16.5 147 204-414 174-340 (758)
73 2bjv_A PSP operon transcriptio 99.5 2.7E-13 9.4E-18 133.8 11.9 154 207-412 3-194 (265)
74 1a5t_A Delta prime, HOLB; zinc 99.4 6.1E-12 2.1E-16 128.8 19.8 150 242-442 22-204 (334)
75 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 2.3E-12 8E-17 138.7 15.6 145 211-412 23-196 (500)
76 3n70_A Transport activator; si 99.4 5.9E-13 2E-17 119.7 7.9 84 211-307 2-88 (145)
77 1qvr_A CLPB protein; coiled co 99.3 3.7E-12 1.3E-16 146.2 13.4 156 209-413 557-771 (854)
78 1ojl_A Transcriptional regulat 99.3 1.1E-11 3.9E-16 125.3 11.7 152 211-413 3-191 (304)
79 2gno_A DNA polymerase III, gam 99.3 2.5E-11 8.6E-16 122.9 13.8 123 244-413 18-153 (305)
80 3ec2_A DNA replication protein 99.3 7.3E-12 2.5E-16 116.2 8.0 97 205-307 5-112 (180)
81 3co5_A Putative two-component 99.3 2.8E-12 9.4E-17 115.1 4.7 83 211-307 5-87 (143)
82 3f9v_A Minichromosome maintena 99.2 1E-12 3.5E-17 144.7 1.6 128 246-415 329-493 (595)
83 4akg_A Glutathione S-transfera 99.2 2.2E-11 7.7E-16 151.6 13.5 137 244-413 1267-1432(2695)
84 1w5s_A Origin recognition comp 99.2 2E-10 6.8E-15 119.7 15.7 194 208-443 20-266 (412)
85 1svm_A Large T antigen; AAA+ f 99.2 3.7E-11 1.3E-15 124.9 8.2 121 239-398 164-284 (377)
86 2w58_A DNAI, primosome compone 99.1 1.4E-10 4.7E-15 109.4 8.3 97 205-307 20-127 (202)
87 3cmw_A Protein RECA, recombina 99.0 4.4E-10 1.5E-14 134.8 6.5 147 207-377 1017-1218(1706)
88 1tue_A Replication protein E1; 98.9 1E-09 3.6E-14 103.9 7.6 61 240-306 54-114 (212)
89 2qgz_A Helicase loader, putati 98.9 7.6E-10 2.6E-14 112.1 6.0 96 206-307 120-226 (308)
90 3k1j_A LON protease, ATP-depen 98.8 6.3E-09 2.2E-13 114.8 9.9 52 204-270 35-86 (604)
91 2fna_A Conserved hypothetical 98.8 7.6E-08 2.6E-12 97.5 16.2 56 207-279 10-65 (357)
92 2kjq_A DNAA-related protein; s 98.8 4.8E-09 1.7E-13 94.8 5.5 58 243-307 35-95 (149)
93 2qen_A Walker-type ATPase; unk 98.8 4.1E-07 1.4E-11 91.9 19.7 181 206-442 8-245 (350)
94 2vhj_A Ntpase P4, P4; non- hyd 98.7 5.9E-09 2E-13 105.4 4.4 115 240-384 119-242 (331)
95 2r2a_A Uncharacterized protein 98.7 1.7E-08 5.7E-13 95.8 6.4 121 245-403 6-157 (199)
96 4akg_A Glutathione S-transfera 98.7 1.1E-07 3.8E-12 118.9 14.5 129 244-410 645-791 (2695)
97 3vkg_A Dynein heavy chain, cyt 98.6 8.9E-08 3E-12 120.5 12.1 134 244-412 1304-1469(3245)
98 1u0j_A DNA replication protein 98.6 1.3E-07 4.4E-12 93.3 10.9 59 242-307 102-160 (267)
99 3cmw_A Protein RECA, recombina 98.4 3.5E-07 1.2E-11 110.0 9.4 69 240-308 728-823 (1706)
100 1ny5_A Transcriptional regulat 98.3 3.8E-06 1.3E-10 87.5 13.3 88 209-307 136-243 (387)
101 3dzd_A Transcriptional regulat 98.3 3.6E-06 1.2E-10 87.1 12.8 86 211-307 130-234 (368)
102 3vkg_A Dynein heavy chain, cyt 98.3 5.1E-06 1.8E-10 104.8 14.6 129 244-413 604-754 (3245)
103 3f8t_A Predicted ATPase involv 98.2 5.5E-07 1.9E-11 95.2 4.9 136 212-403 215-385 (506)
104 3cmu_A Protein RECA, recombina 98.2 1E-06 3.4E-11 107.3 7.2 114 240-377 1423-1563(2050)
105 1ye8_A Protein THEP1, hypothet 98.0 1.5E-05 5E-10 73.9 9.0 27 247-273 3-29 (178)
106 1jr3_D DNA polymerase III, del 98.0 5.3E-05 1.8E-09 77.0 12.9 123 243-413 17-156 (343)
107 1z6t_A APAF-1, apoptotic prote 97.9 0.00025 8.7E-09 77.2 17.8 50 206-266 120-169 (591)
108 3sfz_A APAF-1, apoptotic pepti 97.6 0.0011 3.8E-08 77.9 18.7 165 205-437 119-322 (1249)
109 2cvh_A DNA repair and recombin 97.6 0.00018 6.2E-09 67.6 9.5 40 240-279 16-55 (220)
110 3hr8_A Protein RECA; alpha and 97.6 0.00012 4.1E-09 75.2 8.5 70 240-309 57-153 (356)
111 3trf_A Shikimate kinase, SK; a 97.6 3.2E-05 1.1E-09 71.1 3.6 33 244-276 5-37 (185)
112 3vaa_A Shikimate kinase, SK; s 97.5 4.1E-05 1.4E-09 71.7 3.7 34 243-276 24-57 (199)
113 1qhx_A CPT, protein (chloramph 97.5 6.5E-05 2.2E-09 68.5 4.9 33 245-277 4-36 (178)
114 1n0w_A DNA repair protein RAD5 97.5 0.00019 6.5E-09 68.5 8.0 40 240-279 20-68 (243)
115 3kb2_A SPBC2 prophage-derived 97.5 8.1E-05 2.8E-09 67.1 5.0 31 246-276 3-33 (173)
116 2rhm_A Putative kinase; P-loop 97.5 4.8E-05 1.6E-09 70.2 3.4 35 241-275 2-36 (193)
117 2a5y_B CED-4; apoptosis; HET: 97.5 0.0054 1.8E-07 66.4 19.7 163 213-439 131-333 (549)
118 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00081 2.8E-08 63.4 11.3 37 240-276 19-58 (235)
119 1via_A Shikimate kinase; struc 97.4 7.4E-05 2.5E-09 68.2 3.1 30 246-275 6-35 (175)
120 3iij_A Coilin-interacting nucl 97.4 8.5E-05 2.9E-09 68.0 3.3 32 244-275 11-42 (180)
121 2iyv_A Shikimate kinase, SK; t 97.3 8.6E-05 3E-09 68.2 3.2 31 246-276 4-34 (184)
122 1zuh_A Shikimate kinase; alpha 97.3 9.4E-05 3.2E-09 66.9 3.2 32 245-276 8-39 (168)
123 1xp8_A RECA protein, recombina 97.3 0.00075 2.6E-08 69.6 10.3 69 240-308 70-165 (366)
124 1kag_A SKI, shikimate kinase I 97.3 0.0001 3.6E-09 66.7 3.4 30 245-274 5-34 (173)
125 1y63_A LMAJ004144AAA protein; 97.3 0.00011 3.6E-09 67.9 3.5 33 244-276 10-43 (184)
126 2ze6_A Isopentenyl transferase 97.3 0.00015 5.2E-09 70.8 4.0 32 246-277 3-34 (253)
127 1e6c_A Shikimate kinase; phosp 97.3 0.00012 4.1E-09 66.2 3.1 31 246-276 4-34 (173)
128 2zr9_A Protein RECA, recombina 97.2 0.0005 1.7E-08 70.4 7.9 69 240-308 57-152 (349)
129 2orw_A Thymidine kinase; TMTK, 97.2 0.00018 6E-09 66.9 3.8 63 245-307 4-88 (184)
130 2cdn_A Adenylate kinase; phosp 97.2 0.00018 6E-09 67.2 3.8 31 245-275 21-51 (201)
131 3cmu_A Protein RECA, recombina 97.2 0.0006 2.1E-08 83.3 9.4 70 240-309 1077-1173(2050)
132 1tev_A UMP-CMP kinase; ploop, 97.2 0.00016 5.5E-09 66.4 3.3 32 244-275 3-34 (196)
133 3lw7_A Adenylate kinase relate 97.2 0.00015 5.1E-09 65.1 3.0 29 246-275 3-31 (179)
134 1gvn_B Zeta; postsegregational 97.2 0.00046 1.6E-08 68.7 6.8 35 243-277 32-66 (287)
135 1u94_A RECA protein, recombina 97.2 0.00079 2.7E-08 69.2 8.5 69 240-308 59-154 (356)
136 2pt5_A Shikimate kinase, SK; a 97.2 0.00018 6.1E-09 64.8 3.2 30 247-276 3-32 (168)
137 2z43_A DNA repair and recombin 97.2 0.00051 1.7E-08 69.5 6.8 40 240-279 103-151 (324)
138 3kw6_A 26S protease regulatory 97.2 0.00025 8.6E-09 56.2 3.6 66 397-464 1-74 (78)
139 1qf9_A UMP/CMP kinase, protein 97.2 0.00019 6.4E-09 65.8 3.3 33 243-275 5-37 (194)
140 1pzn_A RAD51, DNA repair and r 97.1 0.00046 1.6E-08 70.7 6.4 29 240-268 127-155 (349)
141 3t61_A Gluconokinase; PSI-biol 97.1 0.00022 7.6E-09 66.5 3.8 33 244-276 18-50 (202)
142 3cm0_A Adenylate kinase; ATP-b 97.1 0.00016 5.4E-09 66.4 2.5 31 245-275 5-35 (186)
143 2c95_A Adenylate kinase 1; tra 97.1 0.00021 7.2E-09 65.9 3.1 33 244-276 9-41 (196)
144 1ly1_A Polynucleotide kinase; 97.1 0.00014 4.9E-09 66.0 1.9 29 245-273 3-32 (181)
145 1nlf_A Regulatory protein REPA 97.1 0.00084 2.9E-08 66.1 7.7 29 240-268 26-54 (279)
146 1kht_A Adenylate kinase; phosp 97.1 0.00017 5.8E-09 66.1 2.4 30 245-274 4-38 (192)
147 3dl0_A Adenylate kinase; phosp 97.1 0.00023 7.8E-09 67.1 3.3 29 247-275 3-31 (216)
148 2bwj_A Adenylate kinase 5; pho 97.1 0.00021 7.2E-09 66.1 2.9 32 244-275 12-43 (199)
149 3io5_A Recombination and repai 97.1 0.00091 3.1E-08 67.4 7.6 69 240-309 25-125 (333)
150 3be4_A Adenylate kinase; malar 97.1 0.0002 7E-09 67.8 2.8 31 245-275 6-36 (217)
151 3fb4_A Adenylate kinase; psych 97.1 0.00025 8.5E-09 66.8 3.3 29 247-275 3-31 (216)
152 1zd8_A GTP:AMP phosphotransfer 97.1 0.00022 7.7E-09 67.9 2.9 32 244-275 7-38 (227)
153 1v5w_A DMC1, meiotic recombina 97.0 0.0014 5E-08 66.7 9.0 40 240-279 118-166 (343)
154 1aky_A Adenylate kinase; ATP:A 97.0 0.0003 1E-08 66.6 3.5 31 245-275 5-35 (220)
155 1zp6_A Hypothetical protein AT 97.0 0.00033 1.1E-08 64.4 3.7 36 241-276 6-41 (191)
156 1knq_A Gluconate kinase; ALFA/ 97.0 0.00031 1E-08 63.9 3.4 31 245-275 9-39 (175)
157 1ukz_A Uridylate kinase; trans 97.0 0.00035 1.2E-08 65.1 3.5 32 245-276 16-47 (203)
158 2krk_A 26S protease regulatory 97.0 0.00037 1.3E-08 56.6 3.2 70 395-466 7-84 (86)
159 2vli_A Antibiotic resistance p 97.0 0.00034 1.2E-08 63.8 3.1 29 245-273 6-34 (183)
160 1ak2_A Adenylate kinase isoenz 97.0 0.00036 1.2E-08 66.8 3.4 31 245-275 17-47 (233)
161 2pez_A Bifunctional 3'-phospho 97.0 0.00063 2.2E-08 62.1 4.9 33 244-276 5-40 (179)
162 2pbr_A DTMP kinase, thymidylat 97.0 0.00056 1.9E-08 62.7 4.5 31 247-277 3-36 (195)
163 2p5t_B PEZT; postsegregational 96.9 0.00072 2.4E-08 65.7 5.2 37 242-278 30-66 (253)
164 1zak_A Adenylate kinase; ATP:A 96.9 0.00026 9.1E-09 67.1 2.0 31 244-274 5-35 (222)
165 4eun_A Thermoresistant glucoki 96.9 0.00062 2.1E-08 63.5 4.4 31 244-274 29-59 (200)
166 3e1s_A Exodeoxyribonuclease V, 96.9 0.0029 9.9E-08 69.1 10.1 33 245-277 205-240 (574)
167 1e4v_A Adenylate kinase; trans 96.9 0.00039 1.3E-08 65.6 2.7 29 247-275 3-31 (214)
168 3crm_A TRNA delta(2)-isopenten 96.9 0.0006 2E-08 69.0 4.2 34 244-277 5-38 (323)
169 2bbw_A Adenylate kinase 4, AK4 96.9 0.00068 2.3E-08 65.4 4.4 31 244-274 27-57 (246)
170 3tlx_A Adenylate kinase 2; str 96.8 0.00054 1.9E-08 66.3 3.6 33 243-275 28-60 (243)
171 3umf_A Adenylate kinase; rossm 96.8 0.00065 2.2E-08 64.9 4.1 32 242-273 27-58 (217)
172 2xb4_A Adenylate kinase; ATP-b 96.8 0.00081 2.8E-08 64.0 4.0 29 247-275 3-31 (223)
173 2if2_A Dephospho-COA kinase; a 96.8 0.00051 1.7E-08 64.0 2.6 30 246-276 3-32 (204)
174 2plr_A DTMP kinase, probable t 96.7 0.0016 5.6E-08 60.5 6.0 31 245-275 5-37 (213)
175 2z0h_A DTMP kinase, thymidylat 96.7 0.001 3.5E-08 61.2 4.5 31 247-277 3-36 (197)
176 1cke_A CK, MSSA, protein (cyti 96.7 0.00088 3E-08 63.3 4.0 30 245-274 6-35 (227)
177 2v54_A DTMP kinase, thymidylat 96.7 0.00095 3.2E-08 61.9 4.1 33 245-277 5-38 (204)
178 2jaq_A Deoxyguanosine kinase; 96.7 0.00087 3E-08 62.0 3.8 27 247-273 3-29 (205)
179 3sr0_A Adenylate kinase; phosp 96.7 0.00096 3.3E-08 63.1 4.0 27 247-273 3-29 (206)
180 3ake_A Cytidylate kinase; CMP 96.7 0.00076 2.6E-08 62.7 3.2 31 246-276 4-34 (208)
181 1jjv_A Dephospho-COA kinase; P 96.7 0.00068 2.3E-08 63.3 2.9 30 246-276 4-33 (206)
182 3nwj_A ATSK2; P loop, shikimat 96.7 0.0007 2.4E-08 66.1 2.9 33 244-276 48-80 (250)
183 1nks_A Adenylate kinase; therm 96.7 0.0006 2.1E-08 62.4 2.3 24 246-269 3-26 (194)
184 2grj_A Dephospho-COA kinase; T 96.7 0.00079 2.7E-08 63.0 3.1 31 246-276 14-44 (192)
185 3uie_A Adenylyl-sulfate kinase 96.6 0.0016 5.3E-08 60.7 5.0 26 243-268 24-49 (200)
186 3r20_A Cytidylate kinase; stru 96.6 0.0013 4.4E-08 63.5 4.3 32 244-275 9-40 (233)
187 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00062 2.1E-08 69.7 2.0 50 216-274 5-54 (359)
188 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0015 5.1E-08 63.8 4.5 32 245-276 5-39 (260)
189 4a74_A DNA repair and recombin 96.5 0.0029 9.8E-08 59.6 6.1 29 240-268 21-49 (231)
190 2b8t_A Thymidine kinase; deoxy 96.5 0.0052 1.8E-07 58.8 7.7 62 246-307 14-101 (223)
191 2wwf_A Thymidilate kinase, put 96.5 0.00069 2.4E-08 63.2 1.5 32 244-275 10-41 (212)
192 2r8r_A Sensor protein; KDPD, P 96.5 0.0017 5.9E-08 62.2 4.2 32 246-277 8-42 (228)
193 1uf9_A TT1252 protein; P-loop, 96.4 0.0013 4.5E-08 60.8 3.1 31 245-276 9-39 (203)
194 2h92_A Cytidylate kinase; ross 96.4 0.0016 5.6E-08 61.2 3.4 32 245-276 4-35 (219)
195 3upu_A ATP-dependent DNA helic 96.4 0.0031 1.1E-07 66.8 5.9 63 203-278 17-83 (459)
196 1kao_A RAP2A; GTP-binding prot 96.4 0.013 4.3E-07 51.4 9.0 22 246-267 5-26 (167)
197 1vht_A Dephospho-COA kinase; s 96.4 0.0015 5.3E-08 61.5 3.1 31 245-276 5-35 (218)
198 4e22_A Cytidylate kinase; P-lo 96.3 0.0029 9.8E-08 61.5 4.6 30 245-274 28-57 (252)
199 3jvv_A Twitching mobility prot 96.3 0.0046 1.6E-07 63.4 6.2 60 246-305 125-206 (356)
200 2qt1_A Nicotinamide riboside k 96.2 0.0016 5.4E-08 60.9 2.4 32 245-276 22-54 (207)
201 1nn5_A Similar to deoxythymidy 96.2 0.0013 4.3E-08 61.5 1.7 27 244-270 9-35 (215)
202 2qor_A Guanylate kinase; phosp 96.2 0.0026 8.7E-08 59.5 3.8 29 241-269 9-37 (204)
203 4gp7_A Metallophosphoesterase; 96.2 0.0049 1.7E-07 56.0 5.6 20 244-263 9-28 (171)
204 2bdt_A BH3686; alpha-beta prot 96.2 0.0025 8.6E-08 58.5 3.7 25 246-270 4-28 (189)
205 1g5t_A COB(I)alamin adenosyltr 96.2 0.0079 2.7E-07 56.3 7.1 32 246-277 30-64 (196)
206 1ltq_A Polynucleotide kinase; 96.2 0.0015 5.2E-08 64.7 2.3 29 245-273 3-32 (301)
207 1uj2_A Uridine-cytidine kinase 96.2 0.0021 7.3E-08 62.2 3.3 29 244-272 22-50 (252)
208 3a8t_A Adenylate isopentenyltr 96.2 0.0021 7.3E-08 65.3 3.2 36 245-280 41-76 (339)
209 1q3t_A Cytidylate kinase; nucl 96.2 0.0033 1.1E-07 60.1 4.5 30 246-275 18-47 (236)
210 2yvu_A Probable adenylyl-sulfa 96.2 0.0045 1.5E-07 56.7 5.2 26 244-269 13-38 (186)
211 2qmh_A HPR kinase/phosphorylas 96.2 0.0024 8.1E-08 60.1 3.0 32 244-276 34-65 (205)
212 3foz_A TRNA delta(2)-isopenten 96.1 0.0032 1.1E-07 63.2 4.2 36 243-278 9-44 (316)
213 4b3f_X DNA-binding protein smu 96.1 0.0079 2.7E-07 66.5 7.7 57 207-278 183-242 (646)
214 2iut_A DNA translocase FTSK; n 96.1 0.022 7.4E-07 61.8 10.8 40 367-408 378-419 (574)
215 1kgd_A CASK, peripheral plasma 96.1 0.0032 1.1E-07 57.6 3.8 25 245-269 6-30 (180)
216 2dr3_A UPF0273 protein PH0284; 96.1 0.0041 1.4E-07 59.1 4.3 39 240-278 19-60 (247)
217 3zvl_A Bifunctional polynucleo 96.1 0.0021 7.1E-08 67.3 2.4 33 244-276 258-290 (416)
218 3aji_B S6C, proteasome (prosom 96.0 0.0036 1.2E-07 50.0 3.2 67 400-468 2-76 (83)
219 2j41_A Guanylate kinase; GMP, 96.0 0.0032 1.1E-07 58.3 3.4 25 244-268 6-30 (207)
220 1rz3_A Hypothetical protein rb 96.0 0.0096 3.3E-07 55.4 6.6 35 244-278 22-59 (201)
221 1z0j_A RAB-22, RAS-related pro 96.0 0.007 2.4E-07 53.5 5.4 23 246-268 8-30 (170)
222 3d3q_A TRNA delta(2)-isopenten 96.0 0.0032 1.1E-07 64.1 3.3 33 245-277 8-40 (340)
223 1m7g_A Adenylylsulfate kinase; 96.0 0.0046 1.6E-07 58.0 4.2 34 243-276 24-61 (211)
224 2i1q_A DNA repair and recombin 96.0 0.0065 2.2E-07 61.0 5.4 28 240-267 94-121 (322)
225 1vt4_I APAF-1 related killer D 95.9 0.026 9E-07 65.2 10.8 55 213-279 131-191 (1221)
226 2ce2_X GTPase HRAS; signaling 95.9 0.017 6E-07 50.3 7.6 23 246-268 5-27 (166)
227 2f6r_A COA synthase, bifunctio 95.9 0.003 1E-07 62.4 2.9 31 245-276 76-106 (281)
228 1ek0_A Protein (GTP-binding pr 95.9 0.0082 2.8E-07 52.9 5.4 23 246-268 5-27 (170)
229 3tau_A Guanylate kinase, GMP k 95.9 0.0042 1.4E-07 58.3 3.6 27 244-270 8-34 (208)
230 3fdi_A Uncharacterized protein 95.9 0.0038 1.3E-07 58.6 3.2 29 246-274 8-36 (201)
231 2ius_A DNA translocase FTSK; n 95.9 0.025 8.5E-07 60.7 9.9 41 367-409 332-374 (512)
232 2ehv_A Hypothetical protein PH 95.9 0.0034 1.2E-07 59.9 2.8 26 240-265 26-51 (251)
233 1u8z_A RAS-related protein RAL 95.8 0.025 8.5E-07 49.5 8.1 23 245-267 5-27 (168)
234 4dsu_A GTPase KRAS, isoform 2B 95.8 0.02 6.8E-07 51.5 7.6 23 246-268 6-28 (189)
235 3c8u_A Fructokinase; YP_612366 95.8 0.0072 2.5E-07 56.6 4.6 26 244-269 22-47 (208)
236 3tr0_A Guanylate kinase, GMP k 95.8 0.0057 1.9E-07 56.6 3.8 25 245-269 8-32 (205)
237 2px0_A Flagellar biosynthesis 95.8 0.018 6.2E-07 57.3 7.7 59 244-302 105-189 (296)
238 2a9k_A RAS-related protein RAL 95.8 0.03 1E-06 50.1 8.5 23 245-267 19-41 (187)
239 1c1y_A RAS-related protein RAP 95.8 0.023 7.8E-07 49.9 7.6 22 246-267 5-26 (167)
240 2zts_A Putative uncharacterize 95.7 0.008 2.7E-07 57.1 4.9 39 240-278 26-68 (251)
241 2oil_A CATX-8, RAS-related pro 95.7 0.013 4.5E-07 53.4 6.1 23 245-267 26-48 (193)
242 1r2q_A RAS-related protein RAB 95.7 0.011 3.9E-07 52.0 5.4 22 246-267 8-29 (170)
243 3exa_A TRNA delta(2)-isopenten 95.7 0.0053 1.8E-07 61.7 3.4 33 245-277 4-36 (322)
244 3q72_A GTP-binding protein RAD 95.7 0.012 4.2E-07 51.8 5.5 21 246-266 4-24 (166)
245 3lda_A DNA repair protein RAD5 95.7 0.012 4.2E-07 61.2 6.2 40 240-279 174-222 (400)
246 2bov_A RAla, RAS-related prote 95.7 0.037 1.3E-06 50.6 9.0 23 245-267 15-37 (206)
247 2fz4_A DNA repair protein RAD2 95.6 0.0086 2.9E-07 57.5 4.7 33 246-278 110-142 (237)
248 1w4r_A Thymidine kinase; type 95.6 0.015 5.3E-07 54.3 6.2 60 245-307 21-103 (195)
249 1r8s_A ADP-ribosylation factor 95.6 0.069 2.4E-06 46.7 10.4 21 247-267 3-23 (164)
250 3a00_A Guanylate kinase, GMP k 95.6 0.0058 2E-07 56.1 3.3 25 245-269 2-26 (186)
251 1g41_A Heat shock protein HSLU 95.6 0.011 3.8E-07 62.3 5.7 95 287-409 242-346 (444)
252 4b4t_J 26S protease regulatory 95.6 0.0037 1.3E-07 65.0 2.0 39 466-504 133-171 (405)
253 2efe_B Small GTP-binding prote 95.6 0.015 5.3E-07 51.9 6.0 23 245-267 13-35 (181)
254 1htw_A HI0065; nucleotide-bind 95.6 0.0086 3E-07 54.0 4.2 28 241-268 30-57 (158)
255 3b9q_A Chloroplast SRP recepto 95.6 0.0073 2.5E-07 60.4 4.0 52 217-268 71-124 (302)
256 3tkl_A RAS-related protein RAB 95.6 0.013 4.6E-07 53.2 5.6 24 245-268 17-40 (196)
257 3asz_A Uridine kinase; cytidin 95.6 0.0046 1.6E-07 57.7 2.3 25 245-269 7-31 (211)
258 3bc1_A RAS-related protein RAB 95.6 0.023 7.9E-07 51.2 7.0 23 245-267 12-34 (195)
259 1lvg_A Guanylate kinase, GMP k 95.6 0.0064 2.2E-07 56.6 3.3 26 244-269 4-29 (198)
260 1x3s_A RAS-related protein RAB 95.5 0.031 1E-06 50.6 7.8 23 245-267 16-38 (195)
261 2v9p_A Replication protein E1; 95.5 0.0079 2.7E-07 60.3 4.1 34 239-272 121-154 (305)
262 1ex7_A Guanylate kinase; subst 95.5 0.0082 2.8E-07 55.8 3.9 26 245-270 2-27 (186)
263 1z0f_A RAB14, member RAS oncog 95.5 0.019 6.4E-07 51.1 6.1 24 245-268 16-39 (179)
264 3vlf_B 26S protease regulatory 95.5 0.0046 1.6E-07 50.2 1.8 67 400-468 2-76 (88)
265 2c9o_A RUVB-like 1; hexameric 95.5 0.031 1.1E-06 59.0 8.7 58 348-413 310-380 (456)
266 3t1o_A Gliding protein MGLA; G 95.5 0.043 1.5E-06 49.6 8.6 24 245-268 15-38 (198)
267 4eaq_A DTMP kinase, thymidylat 95.5 0.0098 3.4E-07 56.9 4.3 29 246-274 28-58 (229)
268 3gmt_A Adenylate kinase; ssgci 95.4 0.0074 2.5E-07 58.0 3.3 29 247-275 11-39 (230)
269 2nzj_A GTP-binding protein REM 95.4 0.022 7.6E-07 50.5 6.3 22 246-267 6-27 (175)
270 1x6v_B Bifunctional 3'-phospho 95.4 0.0093 3.2E-07 65.5 4.5 33 244-276 52-87 (630)
271 1nrj_B SR-beta, signal recogni 95.4 0.017 5.7E-07 53.8 5.7 25 244-268 12-36 (218)
272 1odf_A YGR205W, hypothetical 3 95.4 0.012 4.2E-07 58.4 4.9 28 243-270 30-57 (290)
273 3kl4_A SRP54, signal recogniti 95.4 0.01 3.6E-07 62.3 4.5 34 244-277 97-133 (433)
274 1z6g_A Guanylate kinase; struc 95.4 0.0087 3E-07 56.7 3.5 26 243-268 22-47 (218)
275 2atv_A RERG, RAS-like estrogen 95.3 0.046 1.6E-06 49.9 8.3 24 244-267 28-51 (196)
276 1znw_A Guanylate kinase, GMP k 95.3 0.0094 3.2E-07 55.7 3.6 27 243-269 19-45 (207)
277 1c9k_A COBU, adenosylcobinamid 95.3 0.013 4.3E-07 54.2 4.4 33 247-280 2-34 (180)
278 2v3c_C SRP54, signal recogniti 95.3 0.017 5.9E-07 60.7 6.0 34 244-277 99-135 (432)
279 3con_A GTPase NRAS; structural 95.3 0.023 7.9E-07 51.5 6.1 23 246-268 23-45 (190)
280 2erx_A GTP-binding protein DI- 95.3 0.025 8.7E-07 49.8 6.2 22 246-267 5-26 (172)
281 1cr0_A DNA primase/helicase; R 95.3 0.0082 2.8E-07 59.3 3.1 39 239-277 30-72 (296)
282 2xau_A PRE-mRNA-splicing facto 95.3 0.027 9.4E-07 63.5 7.7 59 207-267 72-132 (773)
283 3ney_A 55 kDa erythrocyte memb 95.2 0.012 4.2E-07 55.1 4.0 26 244-269 19-44 (197)
284 1p9r_A General secretion pathw 95.2 0.024 8.2E-07 59.3 6.5 49 206-269 143-192 (418)
285 3eph_A TRNA isopentenyltransfe 95.2 0.0095 3.3E-07 61.9 3.4 34 244-277 2-35 (409)
286 3kkq_A RAS-related protein M-R 95.2 0.03 1E-06 50.3 6.4 23 245-267 19-41 (183)
287 1vma_A Cell division protein F 95.2 0.014 4.7E-07 58.6 4.4 57 218-277 79-140 (306)
288 3clv_A RAB5 protein, putative; 95.2 0.028 9.7E-07 50.9 6.2 23 245-267 8-30 (208)
289 2yhs_A FTSY, cell division pro 95.1 0.01 3.6E-07 63.2 3.6 25 244-268 293-317 (503)
290 2og2_A Putative signal recogni 95.1 0.01 3.5E-07 60.9 3.4 52 217-268 128-181 (359)
291 2h57_A ADP-ribosylation factor 95.1 0.017 5.9E-07 52.4 4.7 23 246-268 23-45 (190)
292 3hdt_A Putative kinase; struct 95.1 0.0093 3.2E-07 57.0 2.9 30 245-274 15-44 (223)
293 3dm5_A SRP54, signal recogniti 95.1 0.013 4.5E-07 61.6 4.3 60 217-277 74-136 (443)
294 2eyu_A Twitching motility prot 95.1 0.013 4.5E-07 57.3 4.1 27 242-268 23-49 (261)
295 1zd9_A ADP-ribosylation factor 95.1 0.034 1.1E-06 50.5 6.5 22 246-267 24-45 (188)
296 3bh0_A DNAB-like replicative h 95.0 0.034 1.2E-06 55.7 6.9 39 240-278 64-105 (315)
297 1gtv_A TMK, thymidylate kinase 95.0 0.0047 1.6E-07 57.6 0.5 23 247-269 3-25 (214)
298 2f7s_A C25KG, RAS-related prot 95.0 0.042 1.4E-06 51.0 7.1 23 245-267 26-48 (217)
299 1s96_A Guanylate kinase, GMP k 95.0 0.014 4.7E-07 55.6 3.7 29 241-269 13-41 (219)
300 3tqf_A HPR(Ser) kinase; transf 94.9 0.015 5E-07 53.5 3.4 28 244-272 16-43 (181)
301 2i3b_A HCR-ntpase, human cance 94.9 0.013 4.4E-07 54.5 3.1 23 246-268 3-25 (189)
302 3dz8_A RAS-related protein RAB 94.9 0.017 5.9E-07 52.6 4.0 23 246-268 25-47 (191)
303 1zu4_A FTSY; GTPase, signal re 94.9 0.02 6.7E-07 57.8 4.6 35 243-277 104-141 (320)
304 1zbd_A Rabphilin-3A; G protein 94.9 0.028 9.6E-07 51.5 5.4 23 245-267 9-31 (203)
305 2y8e_A RAB-protein 6, GH09086P 94.8 0.016 5.5E-07 51.6 3.5 22 246-267 16-37 (179)
306 2hxs_A RAB-26, RAS-related pro 94.8 0.038 1.3E-06 49.1 6.0 22 246-267 8-29 (178)
307 2jeo_A Uridine-cytidine kinase 94.8 0.016 5.5E-07 55.6 3.7 27 246-272 27-53 (245)
308 2ewv_A Twitching motility prot 94.8 0.019 6.4E-07 59.2 4.3 29 241-269 133-161 (372)
309 2gk6_A Regulator of nonsense t 94.8 0.023 7.7E-07 62.6 5.1 23 246-268 197-219 (624)
310 3thx_B DNA mismatch repair pro 94.8 0.045 1.5E-06 62.8 7.7 24 243-266 672-695 (918)
311 3e70_C DPA, signal recognition 94.8 0.028 9.7E-07 56.8 5.5 27 242-268 127-153 (328)
312 2fg5_A RAB-22B, RAS-related pr 94.7 0.022 7.5E-07 52.0 4.2 23 245-267 24-46 (192)
313 1np6_A Molybdopterin-guanine d 94.7 0.018 6.2E-07 52.8 3.6 26 243-268 5-30 (174)
314 2hup_A RAS-related protein RAB 94.7 0.037 1.3E-06 51.1 5.7 23 245-267 30-52 (201)
315 1z06_A RAS-related protein RAB 94.7 0.051 1.7E-06 49.2 6.5 23 245-267 21-43 (189)
316 3q85_A GTP-binding protein REM 94.7 0.023 8E-07 50.1 4.1 20 247-266 5-24 (169)
317 3oes_A GTPase rhebl1; small GT 94.7 0.033 1.1E-06 51.2 5.3 24 245-268 25-48 (201)
318 1fzq_A ADP-ribosylation factor 94.7 0.1 3.5E-06 47.1 8.5 23 245-267 17-39 (181)
319 2p5s_A RAS and EF-hand domain 94.6 0.05 1.7E-06 49.9 6.4 24 244-267 28-51 (199)
320 1a7j_A Phosphoribulokinase; tr 94.6 0.0064 2.2E-07 60.5 0.2 36 246-281 7-45 (290)
321 2bme_A RAB4A, RAS-related prot 94.6 0.02 7E-07 51.5 3.5 23 245-267 11-33 (186)
322 3tqc_A Pantothenate kinase; bi 94.5 0.037 1.3E-06 55.8 5.6 24 246-269 94-117 (321)
323 3thx_A DNA mismatch repair pro 94.5 0.13 4.4E-06 59.1 10.8 23 244-266 662-684 (934)
324 2ged_A SR-beta, signal recogni 94.5 0.033 1.1E-06 50.6 4.8 26 243-268 47-72 (193)
325 2axn_A 6-phosphofructo-2-kinas 94.5 0.028 9.4E-07 60.6 4.9 26 244-269 35-60 (520)
326 2il1_A RAB12; G-protein, GDP, 94.5 0.035 1.2E-06 50.7 4.9 22 246-267 28-49 (192)
327 3lnc_A Guanylate kinase, GMP k 94.5 0.011 3.8E-07 56.1 1.5 26 244-269 27-53 (231)
328 1zj6_A ADP-ribosylation factor 94.5 0.098 3.3E-06 47.2 7.9 23 244-266 16-38 (187)
329 2fn4_A P23, RAS-related protei 94.4 0.032 1.1E-06 49.7 4.5 23 245-267 10-32 (181)
330 2g6b_A RAS-related protein RAB 94.4 0.044 1.5E-06 48.8 5.4 23 245-267 11-33 (180)
331 1m8p_A Sulfate adenylyltransfe 94.4 0.022 7.5E-07 62.1 3.8 32 245-276 397-432 (573)
332 3kta_A Chromosome segregation 94.4 0.019 6.6E-07 52.0 2.9 24 246-269 28-51 (182)
333 1wb9_A DNA mismatch repair pro 94.4 0.11 3.6E-06 58.9 9.5 24 244-267 607-630 (800)
334 2b6h_A ADP-ribosylation factor 94.3 0.093 3.2E-06 47.9 7.5 22 245-266 30-51 (192)
335 3b6e_A Interferon-induced heli 94.3 0.023 7.9E-07 52.5 3.3 24 245-268 49-72 (216)
336 4i1u_A Dephospho-COA kinase; s 94.3 0.022 7.7E-07 53.8 3.2 31 246-277 11-41 (210)
337 4f4c_A Multidrug resistance pr 94.3 0.038 1.3E-06 66.0 5.9 29 241-269 441-469 (1321)
338 1ewq_A DNA mismatch repair pro 94.2 0.11 3.8E-06 58.4 9.3 25 244-268 576-600 (765)
339 2r6a_A DNAB helicase, replicat 94.2 0.038 1.3E-06 58.3 5.2 38 240-277 199-240 (454)
340 2gf0_A GTP-binding protein DI- 94.2 0.054 1.8E-06 49.2 5.6 23 245-267 9-31 (199)
341 1rj9_A FTSY, signal recognitio 94.2 0.029 9.8E-07 56.1 3.9 25 244-268 102-126 (304)
342 1xjc_A MOBB protein homolog; s 94.2 0.044 1.5E-06 50.0 4.8 32 245-276 5-39 (169)
343 2a5j_A RAS-related protein RAB 94.2 0.029 9.8E-07 51.1 3.6 22 246-267 23-44 (191)
344 4b4t_I 26S protease regulatory 94.1 0.018 6.2E-07 60.2 2.4 33 472-504 173-205 (437)
345 2wjy_A Regulator of nonsense t 94.1 0.037 1.3E-06 62.6 5.2 23 246-268 373-395 (800)
346 4edh_A DTMP kinase, thymidylat 94.1 0.028 9.6E-07 53.2 3.5 30 246-275 8-40 (213)
347 1sky_E F1-ATPase, F1-ATP synth 94.1 0.058 2E-06 57.1 6.1 23 246-268 153-175 (473)
348 1sq5_A Pantothenate kinase; P- 94.1 0.023 8E-07 56.7 3.0 25 245-269 81-105 (308)
349 1p5z_B DCK, deoxycytidine kina 94.0 0.013 4.5E-07 56.9 1.1 25 245-269 25-49 (263)
350 2fu5_C RAS-related protein RAB 94.0 0.019 6.7E-07 51.5 2.2 23 245-267 9-31 (183)
351 4dkx_A RAS-related protein RAB 94.0 0.051 1.8E-06 51.4 5.2 21 246-266 15-35 (216)
352 2q6t_A DNAB replication FORK h 94.0 0.041 1.4E-06 57.8 4.9 39 240-278 196-238 (444)
353 3aez_A Pantothenate kinase; tr 94.0 0.031 1.1E-06 56.0 3.8 25 245-269 91-115 (312)
354 2ew1_A RAS-related protein RAB 94.0 0.029 1E-06 52.0 3.3 23 245-267 27-49 (201)
355 3fe2_A Probable ATP-dependent 94.0 0.1 3.4E-06 49.7 7.2 52 206-260 28-82 (242)
356 2j37_W Signal recognition part 94.0 0.033 1.1E-06 59.6 4.1 34 244-277 101-137 (504)
357 2ocp_A DGK, deoxyguanosine kin 94.0 0.031 1E-06 53.4 3.5 25 245-269 3-27 (241)
358 2bcg_Y Protein YP2, GTP-bindin 93.9 0.025 8.7E-07 52.0 2.8 23 245-267 9-31 (206)
359 2fh5_B SR-beta, signal recogni 93.9 0.053 1.8E-06 50.2 4.9 24 245-268 8-31 (214)
360 1bif_A 6-phosphofructo-2-kinas 93.9 0.019 6.5E-07 60.9 2.0 27 244-270 39-65 (469)
361 2dyk_A GTP-binding protein; GT 93.9 0.031 1.1E-06 48.8 3.1 22 246-267 3-24 (161)
362 3v9p_A DTMP kinase, thymidylat 93.9 0.038 1.3E-06 52.8 3.9 30 246-275 27-63 (227)
363 2f9l_A RAB11B, member RAS onco 93.8 0.029 1E-06 51.5 3.0 23 246-268 7-29 (199)
364 4b4t_H 26S protease regulatory 93.8 0.019 6.6E-07 60.5 1.9 32 473-504 201-232 (467)
365 1lw7_A Transcriptional regulat 93.8 0.029 1E-06 57.3 3.3 28 244-271 170-197 (365)
366 1f6b_A SAR1; gtpases, N-termin 93.8 0.088 3E-06 48.4 6.2 21 246-266 27-47 (198)
367 2onk_A Molybdate/tungstate ABC 93.8 0.029 1E-06 54.1 3.0 25 245-269 25-49 (240)
368 2cbz_A Multidrug resistance-as 93.8 0.022 7.6E-07 54.7 2.1 26 243-268 30-55 (237)
369 3tif_A Uncharacterized ABC tra 93.7 0.023 7.8E-07 54.6 2.1 26 244-269 31-56 (235)
370 2www_A Methylmalonic aciduria 93.7 0.12 4.1E-06 52.6 7.5 23 246-268 76-98 (349)
371 3b85_A Phosphate starvation-in 93.7 0.026 9E-07 53.2 2.4 23 245-267 23-45 (208)
372 1oix_A RAS-related protein RAB 93.6 0.029 9.9E-07 51.4 2.6 23 246-268 31-53 (191)
373 2zj8_A DNA helicase, putative 93.6 0.2 7E-06 55.7 9.9 53 208-261 2-56 (720)
374 2xxa_A Signal recognition part 93.6 0.042 1.4E-06 57.7 4.0 37 243-279 99-139 (433)
375 1sgw_A Putative ABC transporte 93.5 0.029 1E-06 53.1 2.4 25 245-269 36-60 (214)
376 1z2a_A RAS-related protein RAB 93.5 0.039 1.3E-06 48.4 3.1 23 245-267 6-28 (168)
377 2pcj_A ABC transporter, lipopr 93.5 0.023 7.8E-07 54.1 1.7 25 245-269 31-55 (224)
378 1g8f_A Sulfate adenylyltransfe 93.5 0.027 9.2E-07 60.4 2.4 26 245-270 396-421 (511)
379 4b4t_L 26S protease subunit RP 93.5 0.023 8E-07 59.7 1.8 34 471-504 171-204 (437)
380 2wji_A Ferrous iron transport 93.4 0.033 1.1E-06 49.5 2.5 22 246-267 5-26 (165)
381 2ffh_A Protein (FFH); SRP54, s 93.4 0.079 2.7E-06 55.5 5.7 34 244-277 98-134 (425)
382 1b0u_A Histidine permease; ABC 93.4 0.032 1.1E-06 54.4 2.6 26 244-269 32-57 (262)
383 1mv5_A LMRA, multidrug resista 93.4 0.032 1.1E-06 53.8 2.5 27 243-269 27-53 (243)
384 4a1f_A DNAB helicase, replicat 93.4 0.059 2E-06 54.7 4.5 38 240-277 42-82 (338)
385 3p32_A Probable GTPase RV1496/ 93.3 0.059 2E-06 54.9 4.6 32 245-276 80-114 (355)
386 1wms_A RAB-9, RAB9, RAS-relate 93.3 0.042 1.5E-06 48.8 3.1 23 245-267 8-30 (177)
387 3sop_A Neuronal-specific septi 93.3 0.033 1.1E-06 54.7 2.5 24 246-269 4-27 (270)
388 2xzl_A ATP-dependent helicase 93.3 0.053 1.8E-06 61.4 4.6 33 246-278 377-413 (802)
389 2pze_A Cystic fibrosis transme 93.3 0.03 1E-06 53.5 2.2 26 244-269 34-59 (229)
390 3cbq_A GTP-binding protein REM 93.3 0.061 2.1E-06 49.4 4.2 21 246-266 25-45 (195)
391 1z08_A RAS-related protein RAB 93.3 0.044 1.5E-06 48.2 3.1 23 245-267 7-29 (170)
392 1w36_D RECD, exodeoxyribonucle 93.3 0.041 1.4E-06 60.4 3.4 25 244-268 164-188 (608)
393 3b1v_A Ferrous iron uptake tra 93.3 0.14 4.7E-06 50.2 7.0 22 246-267 5-26 (272)
394 3tmk_A Thymidylate kinase; pho 93.2 0.055 1.9E-06 51.3 3.8 29 246-274 7-35 (216)
395 2qe7_A ATP synthase subunit al 93.2 0.19 6.6E-06 53.3 8.4 64 242-305 158-229 (502)
396 1ky3_A GTP-binding protein YPT 93.2 0.046 1.6E-06 48.6 3.1 24 245-268 9-32 (182)
397 1g6h_A High-affinity branched- 93.2 0.032 1.1E-06 54.3 2.1 25 245-269 34-58 (257)
398 2ghi_A Transport protein; mult 93.2 0.032 1.1E-06 54.4 2.1 27 243-269 45-71 (260)
399 2oap_1 GSPE-2, type II secreti 93.2 0.031 1.1E-06 60.0 2.2 26 244-269 260-285 (511)
400 2olj_A Amino acid ABC transpor 93.2 0.037 1.3E-06 54.1 2.6 26 244-269 50-75 (263)
401 2zej_A Dardarin, leucine-rich 93.1 0.033 1.1E-06 50.5 2.0 22 246-267 4-25 (184)
402 1f2t_A RAD50 ABC-ATPase; DNA d 93.1 0.044 1.5E-06 48.6 2.8 23 246-268 25-47 (149)
403 1q57_A DNA primase/helicase; d 93.1 0.054 1.8E-06 57.8 4.0 39 240-278 238-280 (503)
404 2d2e_A SUFC protein; ABC-ATPas 93.1 0.041 1.4E-06 53.3 2.7 23 245-267 30-52 (250)
405 3gfo_A Cobalt import ATP-bindi 93.1 0.032 1.1E-06 54.9 2.0 25 245-269 35-59 (275)
406 2ixe_A Antigen peptide transpo 93.1 0.038 1.3E-06 54.3 2.5 26 244-269 45-70 (271)
407 1g16_A RAS-related protein SEC 93.1 0.041 1.4E-06 48.4 2.5 22 246-267 5-26 (170)
408 1j8m_F SRP54, signal recogniti 93.1 0.052 1.8E-06 54.0 3.6 35 244-278 98-135 (297)
409 4b4t_K 26S protease regulatory 93.1 0.035 1.2E-06 58.2 2.3 33 472-504 163-195 (428)
410 1ji0_A ABC transporter; ATP bi 93.0 0.037 1.3E-06 53.2 2.4 25 245-269 33-57 (240)
411 2zu0_C Probable ATP-dependent 93.0 0.044 1.5E-06 53.6 2.9 25 244-268 46-70 (267)
412 3t34_A Dynamin-related protein 93.0 0.37 1.3E-05 48.9 10.0 22 246-267 36-57 (360)
413 2qm8_A GTPase/ATPase; G protei 93.0 0.09 3.1E-06 53.2 5.3 24 245-268 56-79 (337)
414 3bgw_A DNAB-like replicative h 93.0 0.064 2.2E-06 56.5 4.3 39 240-278 193-234 (444)
415 2o8b_B DNA mismatch repair pro 93.0 0.1 3.4E-06 60.7 6.2 22 244-265 789-810 (1022)
416 2ff7_A Alpha-hemolysin translo 93.0 0.036 1.2E-06 53.6 2.1 26 244-269 35-60 (247)
417 2wjg_A FEOB, ferrous iron tran 92.9 0.046 1.6E-06 49.2 2.7 22 246-267 9-30 (188)
418 3llu_A RAS-related GTP-binding 92.9 0.1 3.4E-06 47.7 5.1 24 245-268 21-44 (196)
419 2qi9_C Vitamin B12 import ATP- 92.9 0.033 1.1E-06 54.1 1.8 26 245-270 27-52 (249)
420 1vpl_A ABC transporter, ATP-bi 92.9 0.042 1.4E-06 53.5 2.6 26 244-269 41-66 (256)
421 4b4t_M 26S protease regulatory 92.9 0.037 1.3E-06 58.1 2.3 34 471-504 171-204 (434)
422 3lv8_A DTMP kinase, thymidylat 92.9 0.04 1.4E-06 53.1 2.3 25 245-269 28-52 (236)
423 1z47_A CYSA, putative ABC-tran 92.9 0.046 1.6E-06 55.9 2.9 25 245-269 42-66 (355)
424 4f4c_A Multidrug resistance pr 92.9 0.094 3.2E-06 62.7 6.0 27 242-268 1103-1129(1321)
425 2ihy_A ABC transporter, ATP-bi 92.9 0.041 1.4E-06 54.3 2.4 25 245-269 48-72 (279)
426 1upt_A ARL1, ADP-ribosylation 92.8 0.055 1.9E-06 47.6 3.0 23 245-267 8-30 (171)
427 2gza_A Type IV secretion syste 92.8 0.03 1E-06 57.3 1.5 27 243-269 174-200 (361)
428 2dpy_A FLII, flagellum-specifi 92.8 0.087 3E-06 55.4 4.9 29 245-273 158-186 (438)
429 2it1_A 362AA long hypothetical 92.8 0.051 1.8E-06 55.7 3.1 25 245-269 30-54 (362)
430 3fvq_A Fe(3+) IONS import ATP- 92.8 0.044 1.5E-06 56.1 2.5 25 245-269 31-55 (359)
431 3cr8_A Sulfate adenylyltranfer 92.7 0.039 1.3E-06 59.8 2.2 25 245-269 370-394 (552)
432 2yyz_A Sugar ABC transporter, 92.7 0.053 1.8E-06 55.5 3.0 25 245-269 30-54 (359)
433 2yz2_A Putative ABC transporte 92.7 0.046 1.6E-06 53.4 2.5 26 244-269 33-58 (266)
434 2pt7_A CAG-ALFA; ATPase, prote 92.7 0.041 1.4E-06 55.6 2.2 26 244-269 171-196 (330)
435 2nq2_C Hypothetical ABC transp 92.7 0.042 1.4E-06 53.4 2.1 26 244-269 31-56 (253)
436 1v43_A Sugar-binding transport 92.6 0.055 1.9E-06 55.7 3.1 25 245-269 38-62 (372)
437 1g29_1 MALK, maltose transport 92.6 0.052 1.8E-06 55.9 2.9 25 245-269 30-54 (372)
438 3rlf_A Maltose/maltodextrin im 92.6 0.055 1.9E-06 55.8 3.1 25 245-269 30-54 (381)
439 4g1u_C Hemin import ATP-bindin 92.6 0.041 1.4E-06 53.8 2.1 26 244-269 37-62 (266)
440 2lkc_A Translation initiation 92.6 0.055 1.9E-06 48.1 2.8 24 244-267 8-31 (178)
441 1yrb_A ATP(GTP)binding protein 92.6 0.093 3.2E-06 50.2 4.6 32 245-276 15-48 (262)
442 1tf7_A KAIC; homohexamer, hexa 92.6 0.047 1.6E-06 58.7 2.6 29 240-268 277-305 (525)
443 2f1r_A Molybdopterin-guanine d 92.6 0.034 1.2E-06 50.8 1.2 24 246-269 4-27 (171)
444 2r9v_A ATP synthase subunit al 92.5 0.17 5.9E-06 53.8 6.7 59 247-305 178-242 (515)
445 2pjz_A Hypothetical protein ST 92.4 0.045 1.5E-06 53.5 2.0 25 244-268 30-54 (263)
446 3iby_A Ferrous iron transport 92.4 0.13 4.5E-06 49.8 5.4 22 246-267 3-24 (256)
447 3d31_A Sulfate/molybdate ABC t 92.4 0.048 1.7E-06 55.6 2.2 25 245-269 27-51 (348)
448 4djt_A GTP-binding nuclear pro 92.4 0.021 7.1E-07 53.1 -0.5 22 245-266 12-33 (218)
449 1tf7_A KAIC; homohexamer, hexa 92.3 0.051 1.7E-06 58.4 2.5 39 240-278 35-77 (525)
450 2obl_A ESCN; ATPase, hydrolase 92.3 0.085 2.9E-06 53.7 4.0 29 246-274 73-101 (347)
451 2gj8_A MNME, tRNA modification 92.3 0.053 1.8E-06 48.7 2.2 22 246-267 6-27 (172)
452 2gf9_A RAS-related protein RAB 92.3 0.07 2.4E-06 48.3 3.0 23 245-267 23-45 (189)
453 3tw8_B RAS-related protein RAB 92.3 0.065 2.2E-06 47.6 2.8 22 245-266 10-31 (181)
454 1qhl_A Protein (cell division 92.2 0.027 9.3E-07 53.9 0.2 23 247-269 30-52 (227)
455 1m7b_A RND3/RHOE small GTP-bin 92.2 0.061 2.1E-06 48.5 2.5 23 245-267 8-30 (184)
456 1svi_A GTP-binding protein YSX 92.2 0.052 1.8E-06 49.2 2.0 23 245-267 24-46 (195)
457 2wsm_A Hydrogenase expression/ 92.2 0.063 2.2E-06 50.0 2.7 25 245-269 31-55 (221)
458 3ld9_A DTMP kinase, thymidylat 92.2 0.074 2.5E-06 50.7 3.1 30 245-274 22-55 (223)
459 1mh1_A RAC1; GTP-binding, GTPa 92.2 0.075 2.6E-06 47.5 3.0 22 246-267 7-28 (186)
460 2cxx_A Probable GTP-binding pr 92.0 0.054 1.8E-06 48.7 1.9 21 247-267 4-24 (190)
461 4tmk_A Protein (thymidylate ki 92.0 0.069 2.3E-06 50.5 2.7 23 246-268 5-27 (213)
462 3iev_A GTP-binding protein ERA 92.0 0.22 7.6E-06 49.5 6.5 26 242-267 7-33 (308)
463 3bwd_D RAC-like GTP-binding pr 92.0 0.081 2.8E-06 47.1 3.0 23 245-267 9-31 (182)
464 3c5c_A RAS-like protein 12; GD 91.9 0.083 2.8E-06 47.9 3.1 22 246-267 23-44 (187)
465 1oxx_K GLCV, glucose, ABC tran 91.9 0.047 1.6E-06 55.8 1.5 25 245-269 32-56 (353)
466 1vg8_A RAS-related protein RAB 91.9 0.084 2.9E-06 48.3 3.1 24 245-268 9-32 (207)
467 3ihw_A Centg3; RAS, centaurin, 91.8 0.089 3E-06 47.7 3.1 22 246-267 22-43 (184)
468 1m2o_B GTP-binding protein SAR 91.8 0.073 2.5E-06 48.5 2.5 21 246-266 25-45 (190)
469 2iwr_A Centaurin gamma 1; ANK 91.8 0.066 2.3E-06 47.7 2.2 22 246-267 9-30 (178)
470 1pui_A ENGB, probable GTP-bind 91.8 0.036 1.2E-06 51.1 0.4 24 244-267 26-49 (210)
471 2bbs_A Cystic fibrosis transme 91.8 0.052 1.8E-06 53.9 1.6 26 244-269 64-89 (290)
472 1ko7_A HPR kinase/phosphatase; 91.7 0.095 3.3E-06 52.6 3.5 29 244-273 144-172 (314)
473 3cph_A RAS-related protein SEC 91.7 0.088 3E-06 48.4 3.0 23 245-267 21-43 (213)
474 2rcn_A Probable GTPase ENGC; Y 91.7 0.066 2.2E-06 54.8 2.3 25 245-269 216-240 (358)
475 2npi_A Protein CLP1; CLP1-PCF1 91.7 0.078 2.7E-06 56.1 3.0 28 241-268 135-162 (460)
476 1ls1_A Signal recognition part 91.7 0.16 5.4E-06 50.4 5.0 34 244-277 98-134 (295)
477 3reg_A RHO-like small GTPase; 91.7 0.091 3.1E-06 47.7 3.0 24 245-268 24-47 (194)
478 3gj0_A GTP-binding nuclear pro 91.6 0.068 2.3E-06 49.8 2.2 22 246-267 17-39 (221)
479 3k53_A Ferrous iron transport 91.6 0.067 2.3E-06 52.1 2.2 23 245-267 4-26 (271)
480 2qag_B Septin-6, protein NEDD5 91.6 0.09 3.1E-06 55.0 3.3 21 247-267 45-65 (427)
481 2hf9_A Probable hydrogenase ni 91.6 0.11 3.6E-06 48.6 3.5 24 245-268 39-62 (226)
482 1u0l_A Probable GTPase ENGC; p 91.6 0.07 2.4E-06 53.0 2.4 26 245-270 170-195 (301)
483 3pqc_A Probable GTP-binding pr 91.6 0.066 2.3E-06 48.2 2.0 23 245-267 24-46 (195)
484 1ksh_A ARF-like protein 2; sma 91.5 0.072 2.5E-06 47.9 2.2 24 244-267 18-41 (186)
485 3gd7_A Fusion complex of cysti 91.5 0.065 2.2E-06 55.5 2.1 25 244-268 47-71 (390)
486 2gks_A Bifunctional SAT/APS ki 91.5 0.13 4.6E-06 55.5 4.6 32 245-276 373-407 (546)
487 4hlc_A DTMP kinase, thymidylat 91.5 0.15 5.1E-06 47.8 4.4 29 247-275 5-35 (205)
488 3t5g_A GTP-binding protein RHE 91.5 0.083 2.8E-06 47.2 2.5 22 245-266 7-28 (181)
489 3lxx_A GTPase IMAP family memb 91.4 0.087 3E-06 50.0 2.8 24 245-268 30-53 (239)
490 4ag6_A VIRB4 ATPase, type IV s 91.4 0.18 6.2E-06 51.7 5.4 35 244-278 35-72 (392)
491 3nh6_A ATP-binding cassette SU 91.3 0.062 2.1E-06 53.8 1.6 28 242-269 78-105 (306)
492 3qks_A DNA double-strand break 91.2 0.11 3.8E-06 48.4 3.2 25 246-270 25-49 (203)
493 1knx_A Probable HPR(Ser) kinas 91.2 0.081 2.8E-06 53.0 2.3 30 243-273 146-175 (312)
494 2vp4_A Deoxynucleoside kinase; 91.2 0.12 4E-06 49.0 3.4 27 247-274 23-49 (230)
495 1tq4_A IIGP1, interferon-induc 91.1 0.18 6.3E-06 52.5 5.0 23 246-268 71-93 (413)
496 3tui_C Methionine import ATP-b 91.0 0.095 3.3E-06 53.7 2.7 26 244-269 54-79 (366)
497 3r7w_A Gtpase1, GTP-binding pr 91.0 0.16 5.4E-06 50.5 4.3 23 245-267 4-26 (307)
498 2ck3_A ATP synthase subunit al 91.0 0.33 1.1E-05 51.7 6.8 59 247-305 165-237 (510)
499 1gwn_A RHO-related GTP-binding 91.0 0.098 3.4E-06 48.5 2.5 23 245-267 29-51 (205)
500 2yv5_A YJEQ protein; hydrolase 90.9 0.11 3.8E-06 51.6 3.1 24 245-269 166-189 (302)
No 1
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-43 Score=365.93 Aligned_cols=236 Identities=23% Similarity=0.325 Sum_probs=194.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC-
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT- 281 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~- 281 (525)
-.+..+|++|+|.+++|++|.+.+..|+.++++|..+|++|++|||||||||||||+||+|+|++++.+|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 3455799999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred -----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 282 -----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 282 -----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
++..++.+|..+ .+||||||||||+++. .|...+. ........++++||
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~--~R~~~~~----------------------~~~~~~~~~l~~LL 310 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT--KRYDSNS----------------------GGEREIQRTMLELL 310 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC--CCSCSSC----------------------SSCCHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc--cCCCCCC----------------------CccHHHHHHHHHHH
Confidence 346788888766 4799999999999975 4433221 12345577899999
Q ss_pred hhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-C
Q 009791 355 NFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-N 433 (525)
Q Consensus 355 n~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~ 433 (525)
+.|||+.+. ++++||+|||+|+.|||||+||||||++|+|++|+.++|++|++.|+.... .....+++.++..+ |
T Consensus 311 ~~lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~G 386 (437)
T 4b4t_I 311 NQLDGFDDR--GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDD 386 (437)
T ss_dssp HHHHHCCCS--SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCS
T ss_pred HHhhCcCCC--CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCC
Confidence 999998664 569999999999999999999999999999999999999999999997652 22233577788877 9
Q ss_pred CCHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhc
Q 009791 434 ITPAQVAEQFMK-------SEDADVALAALIKLLKEKERN 466 (525)
Q Consensus 434 ~tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~ 466 (525)
||+|||.+++.. .....+..++|.+|++...++
T Consensus 387 fSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 387 LSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 999999987652 112223445555555554443
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-43 Score=365.82 Aligned_cols=233 Identities=24% Similarity=0.328 Sum_probs=193.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC---
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT--- 281 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~--- 281 (525)
+..+|++|+|.+++|++|.+.+..++.+|+.|.++|+++|+|+|||||||||||+||+|+|++++.+++.++++++.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ---ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 282 ---RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 282 ---~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
++..++.+|..+ .+||||||||||+++. .|..... ++......++++||+.
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~--~R~~~~~----------------------~~~~~~~~~l~~lL~~ 278 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS--TRVEGSG----------------------GGDSEVQRTMLELLNQ 278 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTT--SCSCSSS----------------------GGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhcc--CCCCCCC----------------------CCcHHHHHHHHHHHHh
Confidence 357789999776 4799999999999975 3322221 1123456789999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
|||+.+. .+++||+|||+|+.|||||+||||||++|+|++|+.++|.+|++.|+...+ .....+++.++..+ |||
T Consensus 279 lDg~~~~--~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--l~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 279 LDGFETS--KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN--LTRGINLRKVAEKMNGCS 354 (405)
T ss_dssp HHTTTCC--CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB--CCSSCCHHHHHHHCCSCC
T ss_pred hhccCCC--CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHCCCCC
Confidence 9999765 569999999999999999999999999999999999999999999997652 22334577888887 999
Q ss_pred HHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhh
Q 009791 436 PAQVAEQFMK-------SEDADVALAALIKLLKEKER 465 (525)
Q Consensus 436 padi~~~l~~-------~~~~~~al~~l~~al~~~~~ 465 (525)
+|||..+|.. .+...+..++|.+|++...+
T Consensus 355 GADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 355 GADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 9999987642 12222344555555555443
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-42 Score=364.18 Aligned_cols=237 Identities=22% Similarity=0.317 Sum_probs=196.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.+..+|++|+|.+++|++|.+.+..++.+|+.|.++|+++|+|+|||||||||||+||+|+|++++.+++.++++++.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 455799999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
+...++.+|..+ .+||||||||||+++. .|..... ........++++||+
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~--~R~~~~~----------------------~~~~~~~~~l~~lL~ 310 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG--RRFSEGT----------------------SADREIQRTLMELLT 310 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC--CCSSSCC----------------------SSTTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeeccccccc--ccccCCC----------------------CcchHHHHHHHHHHH
Confidence 346688888766 5899999999999975 4433221 123345678999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.|||+.+. ++++||+|||+|+.|||||+||||||++|+|++|+.++|.+||+.|+.... .....+++.++..+ ||
T Consensus 311 ~lDg~~~~--~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--~~~d~dl~~lA~~t~G~ 386 (437)
T 4b4t_L 311 QMDGFDNL--GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK--KTGEFDFEAAVKMSDGF 386 (437)
T ss_dssp HHHSSSCT--TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC--BCSCCCHHHHHHTCCSC
T ss_pred HhhcccCC--CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhCCCC
Confidence 99999775 569999999999999999999999999999999999999999999997552 22234577888887 99
Q ss_pred CHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhcCC
Q 009791 435 TPAQVAEQFMK-------SEDADVALAALIKLLKEKERNGS 468 (525)
Q Consensus 435 tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~~~ 468 (525)
|+|||..++.. .+...+..++|.+|++...+...
T Consensus 387 sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 387 NGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 99999987642 12223456667777776665543
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-42 Score=367.62 Aligned_cols=239 Identities=22% Similarity=0.287 Sum_probs=198.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC-
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT- 281 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~- 281 (525)
-.++.+|++|+|.+++|++|.+.+..|+.+|+.|.++|+++|+|+|||||||||||+||+|+|++++.+++.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 3566799999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 282 -----RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 282 -----~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
++..++.+|..+. +||||||||||+++. .|..... ++......++++||
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~--~R~~~~~----------------------~~~~~~~~~~~~lL 309 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSEK----------------------SGDREVQRTMLELL 309 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHC--CCSSGGG----------------------GTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhh--ccCCCCC----------------------CCchHHHHHHHHHH
Confidence 3467888887664 799999999999975 4432211 12234567899999
Q ss_pred hhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-C
Q 009791 355 NFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-N 433 (525)
Q Consensus 355 n~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~ 433 (525)
+.|||+.+. ++++||+|||+|+.|||||+||||||++|+|++|+.++|.+|++.|+.... .....+++.++..+ |
T Consensus 310 ~~ldg~~~~--~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--~~~dvdl~~lA~~t~G 385 (434)
T 4b4t_M 310 NQLDGFSSD--DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT--TDDDINWQELARSTDE 385 (434)
T ss_dssp HHHTTSCSS--CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC--BCSCCCHHHHHHHCSS
T ss_pred HHhhccCCC--CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCC
Confidence 999999775 569999999999999999999999999999999999999999999986542 22223467788887 9
Q ss_pred CCHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhcCCC
Q 009791 434 ITPAQVAEQFMK-------SEDADVALAALIKLLKEKERNGSG 469 (525)
Q Consensus 434 ~tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~~~~ 469 (525)
||+|||..++.. .+...+..++|.+|++..+++..+
T Consensus 386 ~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 386 FNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCCc
Confidence 999999987652 122234567777887777766544
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=357.98 Aligned_cols=213 Identities=27% Similarity=0.390 Sum_probs=184.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.+..+|++|+|.+++|++|.+.+..|+.++++|.++|++||+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 445799999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
+...++.+|..+ ..||||||||||+++. .|..... +......+++++||+
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~--~R~~~~~----------------------~~~~~~~r~l~~lL~ 301 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--KRFDAQT----------------------GSDREVQRILIELLT 301 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHC--SCSSSCS----------------------CCCCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhc--cccCCCC----------------------CCChHHHHHHHHHHH
Confidence 346789999766 4799999999999975 4432221 123455789999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcC-CCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-C
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMS-YCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-N 433 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~-~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~ 433 (525)
.|||+.+. .+++||+|||+|+.|||||+||||||++|+|| +|+.++|+.|++.++...+ .....+++.++..+ |
T Consensus 302 ~ldg~~~~--~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~~t~G 377 (428)
T 4b4t_K 302 QMDGFDQS--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLIIRNDS 377 (428)
T ss_dssp HHHHSCSS--CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHHHTTT
T ss_pred HhhCCCCC--CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHHCCC
Confidence 99999876 45999999999999999999999999999996 8999999999999987542 22233577888877 9
Q ss_pred CCHHHHHHHHH
Q 009791 434 ITPAQVAEQFM 444 (525)
Q Consensus 434 ~tpadi~~~l~ 444 (525)
||+|||..++.
T Consensus 378 ~sgadi~~l~~ 388 (428)
T 4b4t_K 378 LSGAVIAAIMQ 388 (428)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998765
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.9e-42 Score=387.75 Aligned_cols=269 Identities=22% Similarity=0.284 Sum_probs=232.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC---
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT--- 281 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~--- 281 (525)
+..+|++|+|.++.|++|.+.+..++.+|+.|..+|+.+|+|+|||||||||||+||+|+|++++.+++.+++.++.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999987763
Q ss_pred ---ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 282 ---RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 282 ---~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
++..++.+|..+. +||||||||||.+++ .|... .......++++||+.
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~--~r~~~-------------------------~~~~~~riv~~LL~~ 331 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKT-------------------------HGEVERRIVSQLLTL 331 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCC--TTTTC-------------------------CCTTHHHHHHHHHTH
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhccccc--ccCCC-------------------------CChHHHHHHHHHHHH
Confidence 3577999998875 699999999999975 33222 123456789999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
|||+.+. ..++||+|||+++.|||||+||||||++|+|+.|+.++|.+|++.++... ......++..++..+ ||+
T Consensus 332 mdg~~~~--~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~--~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 332 MDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--KLADDVDLEQVANETHGHV 407 (806)
T ss_dssp HHHCCGG--GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS--EECTTCCHHHHHHHCCSCC
T ss_pred Hhccccc--CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC--CCCcccCHHHHHHhcCCCC
Confidence 9999775 45999999999999999999999999999999999999999999998765 333345677888887 999
Q ss_pred HHHHHHHHHcC------------------CCHH------HHHHHHHHHHHHhhhcCCCCCCCCCCCCCchhhhcchhhhh
Q 009791 436 PAQVAEQFMKS------------------EDAD------VALAALIKLLKEKERNGSGDVDGDEDEINLDEVAILESKKL 491 (525)
Q Consensus 436 padi~~~l~~~------------------~~~~------~al~~l~~al~~~~~~~~~~~~~~~~~v~w~dIggl~~vK~ 491 (525)
++||..++... ...+ +..+++..+++..+|+.+++...+.|+|+|+||||++++|+
T Consensus 408 gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~ 487 (806)
T 3cf2_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHH
Confidence 99998776420 1111 12468899999999999999999999999999999999999
Q ss_pred HhHHHhhhccccc
Q 009791 492 KTQDQIQDKGKET 504 (525)
Q Consensus 492 ~L~e~i~w~~k~~ 504 (525)
+|++.++||.+..
T Consensus 488 ~l~e~v~~p~~~p 500 (806)
T 3cf2_A 488 ELQELVQYPVEHP 500 (806)
T ss_dssp HHTTTTTTTTTCS
T ss_pred HHHHHHHhhhhCH
Confidence 9999999998764
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-41 Score=355.57 Aligned_cols=213 Identities=24% Similarity=0.301 Sum_probs=183.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.+..+|++|+|.+++|++|.+.+..++.+++.|.++|+++++|+|||||||||||+||+|||++++.+|+.++++++.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 445799999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
++..++.+|..+ .+||||||||||+++. .|..... +.......+++.||+
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~--~R~~~~~----------------------~~~~~~~~~l~~lL~ 338 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGG--ARFDDGA----------------------GGDNEVQRTMLELIT 338 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSB--CCSSSSC----------------------GGGGHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccc--cccCcCC----------------------CccHHHHHHHHHHHH
Confidence 356788888766 5899999999999975 4432221 112345678999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.|||+... ++++||+|||+|+.|||||+||||||++|+|++|+.++|.+|++.|+.... .....+++.+++.+ ||
T Consensus 339 ~lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~--l~~dvdl~~LA~~T~Gf 414 (467)
T 4b4t_H 339 QLDGFDPR--GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--VERGIRWELISRLCPNS 414 (467)
T ss_dssp HHHSSCCT--TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC--BCSSCCHHHHHHHCCSC
T ss_pred HhhccCCC--CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHHCCCC
Confidence 99998765 569999999999999999999999999999999999999999999997652 22233567788777 99
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
|+|||..++.
T Consensus 415 SGADI~~l~~ 424 (467)
T 4b4t_H 415 TGAELRSVCT 424 (467)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998764
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.8e-36 Score=338.19 Aligned_cols=212 Identities=22% Similarity=0.350 Sum_probs=160.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc----
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV---- 280 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l---- 280 (525)
+..+|++++|.++.|+.|.+.+..++.+++.|.+.|+.+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 4468999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred --CChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 281 --TRDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 281 --~~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
.++..++++|..+. .||||||||||+++. .|..... +..+...+++++||++
T Consensus 552 vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~--~R~~~~~----------------------~~~~~~~rv~~~lL~~ 607 (806)
T 3cf2_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAK--ARGGNIG----------------------DGGGAADRVINQILTE 607 (806)
T ss_dssp CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------------------------------CHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCCceeechhhhHHhh--ccCCCCC----------------------CCchHHHHHHHHHHHH
Confidence 46788999998874 799999999999975 3322111 1123456789999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
|||+.+. ++++||+|||+|+.|||||+||||||++|+|++|+.++|.+|++.++... ......+++.|++.+ |||
T Consensus 608 mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~--~~~~~~dl~~la~~t~g~S 683 (806)
T 3cf2_A 608 MDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFS 683 (806)
T ss_dssp HHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC----CCC--------------
T ss_pred HhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC--CCCCCCCHHHHHHhCCCCC
Confidence 9999765 55999999999999999999999999999999999999999999999765 233345677888887 999
Q ss_pred HHHHHHHHH
Q 009791 436 PAQVAEQFM 444 (525)
Q Consensus 436 padi~~~l~ 444 (525)
+|||.+++.
T Consensus 684 Gadi~~l~~ 692 (806)
T 3cf2_A 684 GADLTEICQ 692 (806)
T ss_dssp --CHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 9
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.98 E-value=1.3e-32 Score=296.61 Aligned_cols=252 Identities=22% Similarity=0.288 Sum_probs=197.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC--
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR-- 282 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~-- 282 (525)
.+.+|++|+|.+..++.|.+.+..++..++.|..+|.+.++|+|||||||||||++|+++|++++.+++.++|+++.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999877632
Q ss_pred ----hhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 283 ----DSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 283 ----~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
...++.+|..+ ..|+||||||||.+.. .+... .......+++.||+.
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~--~~~~~-------------------------~~~~~~~~~~~LL~~ 331 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKT-------------------------HGEVERRIVSQLLTL 331 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB--CTTSC-------------------------CCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcc--ccccc-------------------------cchHHHHHHHHHHHH
Confidence 35677777765 4689999999999874 22111 123446788999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
||+.... ..++||+|||+++.||++++|+|||+..|+++.|+.++|.+|++.++.... .....+++.++..+ |++
T Consensus 332 ld~~~~~--~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~--l~~~~~l~~la~~t~g~s 407 (489)
T 3hu3_A 332 MDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHV 407 (489)
T ss_dssp HHHSCTT--SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC--BCTTCCHHHHHHTCTTCC
T ss_pred hhccccC--CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC--CcchhhHHHHHHHccCCc
Confidence 9987654 459999999999999999999999999999999999999999999987542 22233456777776 999
Q ss_pred HHHHHHHHHc-------C--C---------CH------HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCchhhhcch
Q 009791 436 PAQVAEQFMK-------S--E---------DA------DVALAALIKLLKEKERNGSGDVDGDEDEINLDEVAILE 487 (525)
Q Consensus 436 padi~~~l~~-------~--~---------~~------~~al~~l~~al~~~~~~~~~~~~~~~~~v~w~dIggl~ 487 (525)
++|+..++.. . . +. .+..+++.++++..+|+.++++..+.|+|+|+||||-.
T Consensus 408 ~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 9999877542 0 0 11 13578999999999999999999999999999999954
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=7.8e-31 Score=262.78 Aligned_cols=211 Identities=21% Similarity=0.333 Sum_probs=165.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC--
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR-- 282 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~-- 282 (525)
+..+|++|+|.+++|++|.+.+..++.+++.|..+|...++|+|||||||||||+|+++||++++.+++.++..++..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 446899999999999999999999999999999999999999999999999999999999999999999999887743
Q ss_pred ----hhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 283 ----DSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 283 ----~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
...++.+|..+ ..|+|+++||||.++. .|.... .......++.+++.
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~--~r~~~~-------------------------~~~~~~~~~~~l~~ 137 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCP--RRSDRE-------------------------TGASVRVVNQLLTE 137 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------------------------------CTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhc--ccCCCc-------------------------chHHHHHHHHHHHh
Confidence 24577788764 4799999999998764 221110 01123467889999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcC-CCcccHHHHHHHHhhc---
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITD-CEHKLVAEIETLLKTI--- 432 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~-~~~~~~~~i~~l~~~~--- 432 (525)
|||.... ..++++++||+|+.||||++||||||++|++++|+.++|.+|++.++.... .......+++.++..+
T Consensus 138 Lsgg~~~--~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~ 215 (274)
T 2x8a_A 138 MDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCD 215 (274)
T ss_dssp HHTCCST--TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGG
T ss_pred hhccccc--CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccC
Confidence 9998654 458999999999999999999999999999999999999999999985421 0112234566777643
Q ss_pred CCCHHHHHHHHH
Q 009791 433 NITPAQVAEQFM 444 (525)
Q Consensus 433 ~~tpadi~~~l~ 444 (525)
|||+|||..++.
T Consensus 216 g~sgadl~~l~~ 227 (274)
T 2x8a_A 216 CYTGADLSALVR 227 (274)
T ss_dssp SCCHHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 999999998764
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=7.7e-30 Score=258.70 Aligned_cols=213 Identities=22% Similarity=0.351 Sum_probs=174.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc---
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV--- 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l--- 280 (525)
.++.+|++|+|.++.|+.|.+.+..++..++.|..+|+.+++|+|||||||||||++++++|++++.+++.+++.++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ---CChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 281 ---TRDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 281 ---~~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
.....++.+|..+ ..|+||||||||.+.. .+..... .........++.||+
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~--~~~~~~~----------------------~~~~~~~~~~~~lL~ 144 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAK--ARGGNIG----------------------DGGGAADRVINQILT 144 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHH--HHTTTTC----------------------CSSCSCCHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhh--ccCCCcC----------------------CcchHHHHHHHHHHH
Confidence 2445678888766 4699999999998863 1211100 011233467889999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+|++... .+++||+|||+++.|||+++|||||+..|+++.|+.++|.+|++.++...+. ....+++.++..+ ++
T Consensus 145 ~l~~~~~~--~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~--~~~~~~~~la~~~~g~ 220 (301)
T 3cf0_A 145 EMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--AKDVDLEFLAKMTNGF 220 (301)
T ss_dssp HHHSSCTT--SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CSSCCHHHHHHTCSSC
T ss_pred HhhcccCC--CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC--CccchHHHHHHHcCCC
Confidence 99998543 5699999999999999999999999999999999999999999999976532 1222345566656 99
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
+++||.+++.
T Consensus 221 sg~dl~~l~~ 230 (301)
T 3cf0_A 221 SGADLTEICQ 230 (301)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999988765
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=9.8e-30 Score=272.37 Aligned_cols=252 Identities=23% Similarity=0.334 Sum_probs=191.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC---
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT--- 281 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~--- 281 (525)
...+|++|+|.++.|+++.+.+. ++..+..|..+|...++|+||+||||||||+|++++|++++.+++.++++++.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 34689999999999999998765 67788899999999999999999999999999999999999999999988764
Q ss_pred ---ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 282 ---RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 282 ---~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
....++.+|..+ ..||||||||||.+.. .|.... .+.......+++.||+.
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~--~r~~~~----------------------~g~~~~~~~~l~~LL~~ 145 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR--HRGAGL----------------------GGGHDEREQTLNQLLVE 145 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCC--C-------------------------------CHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhh--hccccc----------------------CcCcHHHHHHHHHHHHH
Confidence 235677888766 4799999999999864 221110 01223456789999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
||++... .+++||+|||+++.|||+++||||||..|+++.|+.++|.+|++.++...+ .....++..++..+ |++
T Consensus 146 ld~~~~~--~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 146 MDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp HHHSCGG--GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCC
T ss_pred HhccCCC--CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCc
Confidence 9988653 459999999999999999999999999999999999999999999987552 22222355677777 999
Q ss_pred HHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhcCCCCC-C---CCCCCCCchhhhc
Q 009791 436 PAQVAEQFMK-------SEDADVALAALIKLLKEKERNGSGDV-D---GDEDEINLDEVAI 485 (525)
Q Consensus 436 padi~~~l~~-------~~~~~~al~~l~~al~~~~~~~~~~~-~---~~~~~v~w~dIgg 485 (525)
++||.+++.. .....+..+++.+++....+...+.. . .+...+.|.++|.
T Consensus 222 gadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~ 282 (476)
T 2ce7_A 222 GADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGH 282 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhh
Confidence 9999887643 12234566788888887765432221 1 1222377888775
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.2e-28 Score=246.75 Aligned_cols=236 Identities=23% Similarity=0.299 Sum_probs=185.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC-
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR- 282 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~- 282 (525)
.++.+|++|+|.++.++.|.+.+..++..++.|...|...++++|||||||||||++++++|++++.+++.+++..+..
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred -----hhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 283 -----DSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 283 -----~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
...++.+|..+ ..|+||||||||.++. .+.+... +........+..+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--~~~~~~~----------------------~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA--KRTDALT----------------------GGDREVQRTLMQLLA 146 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB--CCSSSCC----------------------GGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc--cCccccC----------------------CccHHHHHHHHHHHH
Confidence 24466666554 4789999999999864 2222111 112334567888999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.++++... ..++||+|||.++.+|++++|+|||+..++++.|+.++|.+|++.++.... .....+++.++..+ |+
T Consensus 147 ~~~~~~~~--~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 147 EMDGFDAR--GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN--LAEDVNLEEIAKMTEGC 222 (285)
T ss_dssp HHHTTCSS--SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHHCTTC
T ss_pred HhhCCCCC--CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC--CCCcCCHHHHHHHcCCC
Confidence 99887543 469999999999999999999999999999999999999999999987542 22233466677766 89
Q ss_pred CHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhcC
Q 009791 435 TPAQVAEQFMK-------SEDADVALAALIKLLKEKERNG 467 (525)
Q Consensus 435 tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~~ 467 (525)
++++|..++.. .....+..+++.++++......
T Consensus 223 ~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 223 VGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcc
Confidence 99999886542 1222344555666666555443
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=250.49 Aligned_cols=208 Identities=22% Similarity=0.267 Sum_probs=173.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-CCceEEEecCCcC--
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-KFDVFDLQLGNVT-- 281 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-~~~i~~l~~~~l~-- 281 (525)
++.+|++|+|.++.|+.|.+.+..++..++.|.. +..+++|+|||||||||||+||+++|+++ +.+++.++++++.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 4568999999999999999999999999888874 35667899999999999999999999999 8999999988763
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
....++.+|..+ .+|+||||||||.++. .|... ........++.||+
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~--~~~~~-------------------------~~~~~~~~~~~ll~ 138 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG--SRSEN-------------------------ESEAARRIKTEFLV 138 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC--CSSSC-------------------------CTTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc--ccccc-------------------------cchHHHHHHHHHHH
Confidence 346678887655 5799999999999874 22211 12334577899999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+|++... ...++||+|||+++.||++|+| ||+..|+++.|+.++|.+|++.++...+ ......+++.++..+ |+
T Consensus 139 ~ld~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~l~~~~l~~la~~t~G~ 214 (322)
T 1xwi_A 139 QMQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQ-NSLTEADFRELGRKTDGY 214 (322)
T ss_dssp HHHCSSSC-CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCC-BCCCHHHHHHHHHTCTTC
T ss_pred HHhccccc-CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHcCCC
Confidence 99998542 3569999999999999999999 9999999999999999999999987652 122457788888887 99
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
|++||..++.
T Consensus 215 sgadl~~l~~ 224 (322)
T 1xwi_A 215 SGADISIIVR 224 (322)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998765
No 15
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=3.6e-28 Score=240.05 Aligned_cols=212 Identities=25% Similarity=0.389 Sum_probs=165.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
..+.+|++|+|.++.|+.|.+.+. ++..++.|..+|...++|+|||||||||||++++++|++++.+++.+++.++.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 456799999999999999988664 57778888889999999999999999999999999999999999999988763
Q ss_pred ----ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
....++.+|..+. .|+||||||||.+.. .+..... +........++.+|+
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~--~~~~~~~----------------------~~~~~~~~~~~~ll~ 140 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR--QRGAGLG----------------------GGHDEREQTLNQMLV 140 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTC--CCSTTSC----------------------CTTCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhcc--CCCCCcC----------------------CCchHHHHHHHHHHH
Confidence 3456778887663 589999999999864 2211100 112234567899999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+|++... ..++||+|||+++.+|++++|+|||+..|+++.|+.++|.+|++.++...+ .....++..++..+ |+
T Consensus 141 ~l~~~~~~--~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~ 216 (257)
T 1lv7_A 141 EMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGF 216 (257)
T ss_dssp HHHTCCSS--SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTC
T ss_pred HhhCcccC--CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCC
Confidence 99998653 458999999999999999999999999999999999999999999986542 11122244556666 89
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
+++||..++.
T Consensus 217 ~~~dl~~l~~ 226 (257)
T 1lv7_A 217 SGADLANLVN 226 (257)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999987654
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=1.7e-28 Score=250.98 Aligned_cols=210 Identities=21% Similarity=0.249 Sum_probs=171.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC-
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT- 281 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~- 281 (525)
..++.+|++|+|.++.|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 356679999999999999999999999988888776 455678999999999999999999999999999999987752
Q ss_pred -----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 282 -----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 282 -----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
....++.+|..+ .+|+||||||||.+.. .+... .........+.|+
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~~~~~-------------------------~~~~~~~~~~~ll 142 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG--TRGEG-------------------------ESEASRRIKTELL 142 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC--C-------------------------------CCTHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhc--cCCCC-------------------------cchHHHHHHHHHH
Confidence 235567777655 4789999999999864 22111 1123456788999
Q ss_pred hhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-C
Q 009791 355 NFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-N 433 (525)
Q Consensus 355 n~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~ 433 (525)
+.+|++... ...++||+|||+++.|||+|+| ||+..|+++.|+.++|.+|++.++...+ ......+++.++..+ |
T Consensus 143 ~~l~~~~~~-~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~l~~la~~t~g 218 (322)
T 3eie_A 143 VQMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP-CVLTKEDYRTLGAMTEG 218 (322)
T ss_dssp HHHGGGGTS-CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCC-CCCCHHHHHHHHHTTTT
T ss_pred HHhcccccc-CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHcCC
Confidence 999998543 3569999999999999999999 9999999999999999999999997652 222456788888887 8
Q ss_pred CCHHHHHHHHH
Q 009791 434 ITPAQVAEQFM 444 (525)
Q Consensus 434 ~tpadi~~~l~ 444 (525)
++++||..++.
T Consensus 219 ~sg~di~~l~~ 229 (322)
T 3eie_A 219 YSGSDIAVVVK 229 (322)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998765
No 17
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=240.85 Aligned_cols=213 Identities=24% Similarity=0.332 Sum_probs=157.2
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC---
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR--- 282 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~--- 282 (525)
+.+|++|+|.++.|+.|.+.+. ++..++.|...|...++++|||||||||||++++++|++++.+++.++++.+..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4689999999999999988765 578888899999999999999999999999999999999999999999987642
Q ss_pred ---hhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhh
Q 009791 283 ---DSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFI 357 (525)
Q Consensus 283 ---~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~i 357 (525)
...++.+|..+ ..|+||||||||.+.. .+...... .........+..|++.+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~--~~~~~~~~---------------------~~~~~~~~~l~~ll~~~ 137 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGK--KRSTTMSG---------------------FSNTEEEQTLNQLLVEM 137 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC------------------------------------------CHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhc--cccccccC---------------------ccchhHHHHHHHHHHHh
Confidence 34566777655 3689999999999864 22111000 01123346788999999
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCH
Q 009791 358 DGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITP 436 (525)
Q Consensus 358 dgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tp 436 (525)
++.... ..++||+|||.++.||++++|+|||+..++++.|+.++|.+|++.++...+........+..++..+ |+++
T Consensus 138 ~~~~~~--~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 138 DGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp HTCCTT--CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred hCcCCC--CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 987543 5689999999999999999999999999999999999999999999865432222222346677666 8999
Q ss_pred HHHHHHHH
Q 009791 437 AQVAEQFM 444 (525)
Q Consensus 437 adi~~~l~ 444 (525)
++|..++.
T Consensus 216 ~~l~~l~~ 223 (262)
T 2qz4_A 216 ADIANICN 223 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=3.1e-28 Score=252.69 Aligned_cols=209 Identities=22% Similarity=0.260 Sum_probs=169.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.++.+|++|+|.++.|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.+++.++.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45678999999999999999999999998888876 566778999999999999999999999999999999987652
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
....++.+|..+ ..|+||||||||.+.. .|... .........+.||.
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~r~~~-------------------------~~~~~~~~~~~ll~ 176 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTG--TRGEG-------------------------ESEASRRIKTELLV 176 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------------------------------CTHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc--cCCCC-------------------------cchHHHHHHHHHHH
Confidence 345677777665 4799999999999864 22111 12344667899999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.||++... ...++||+|||+++.||++++| ||+..|+++.|+.++|.+|++.++...+ ......+++.++..+ |+
T Consensus 177 ~l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~~~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 177 QMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP-SVLTKEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHCC----CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSC-BCCCHHHHHHHHHHTTTC
T ss_pred Hhhccccc-CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHcCCC
Confidence 99987542 3468999999999999999999 9999999999999999999999997652 122456788888887 89
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
+++||..++.
T Consensus 253 sg~dl~~l~~ 262 (355)
T 2qp9_X 253 SGSDIAVVVK 262 (355)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999988764
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=9e-28 Score=258.57 Aligned_cols=252 Identities=22% Similarity=0.299 Sum_probs=193.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC--
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR-- 282 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~-- 282 (525)
++.+|++|+|.++.|+++.+.+. ++..+..|..+|...++|+|||||||||||+|+++||++++.+++.+++.++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 56799999999999999988664 677788899999999999999999999999999999999999999999887642
Q ss_pred ----hhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 283 ----DSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 283 ----~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
...++.+|..+. .|+|+||||||.+.. .+..... ........+++.||+.
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~--~r~~~~~----------------------~~~~e~~~~l~~LL~~ 160 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR--KRGSGVG----------------------GGNDEREQTLNQLLVE 160 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCC--CSSSSTT----------------------TSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHH--hhccCcC----------------------CCcHHHHHHHHHHHHH
Confidence 245777787764 589999999998864 2211100 1122345788999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
|||.... ..++++++||+|+.|||+|+||||||.+|+++.|+.++|.+|++.++... ......++..++..+ |++
T Consensus 161 Ldg~~~~--~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~--~l~~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 161 MDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFV 236 (499)
T ss_dssp GGGCCSS--CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS--CCCCSSTTHHHHTTSCSCC
T ss_pred hcccccC--ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHhcCCCC
Confidence 9998643 45899999999999999999999999999999999999999999887643 222223355677777 999
Q ss_pred HHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhcCCCCC-CC---CCCCCCchhhhc
Q 009791 436 PAQVAEQFMK-------SEDADVALAALIKLLKEKERNGSGDV-DG---DEDEINLDEVAI 485 (525)
Q Consensus 436 padi~~~l~~-------~~~~~~al~~l~~al~~~~~~~~~~~-~~---~~~~v~w~dIgg 485 (525)
++|+.+++.. .....+..++|.+++....+...+.. .. +...+.|+++|.
T Consensus 237 gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~ 297 (499)
T 2dhr_A 237 GADLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGH 297 (499)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHH
Confidence 9999887642 12234667888999988776543221 11 122378888886
No 20
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=1.5e-27 Score=271.54 Aligned_cols=269 Identities=22% Similarity=0.285 Sum_probs=217.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC--
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR-- 282 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~-- 282 (525)
.+.+|++|+|.++.++.|.+.+..++.+++.|..+++..++++|||||||||||+|+++||++++.+++.+++.++.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred ----hhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 283 ----DSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 283 ----~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
...++.+|..+ ..|+||||||||.++. .+... ........++.|++.
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~--~~~~~-------------------------~~~~~~~~~~~Ll~l 331 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKT-------------------------HGEVERRIVSQLLTL 331 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSC--TTSCC-------------------------CSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhh--ccccc-------------------------cchHHHHHHHHHHHH
Confidence 34577777665 3689999999999874 22111 122346678899999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
++|.... ..+++|+|||+++.||+++.|+|||+..|+++.|+.++|.++++.++.... .....++..++..+ +++
T Consensus 332 l~g~~~~--~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~--l~~~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 332 MDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHV 407 (806)
T ss_dssp HHSSCTT--SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC--CCTTCCTHHHHHSCSSCC
T ss_pred hhhhccc--ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCC--CcccchhHHHHHhhcCcc
Confidence 9998664 458999999999999999999999999999999999999999998876542 22222355666666 899
Q ss_pred HHHHHHHHHc--------C-C---------CH------HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCchhhhcchhhhh
Q 009791 436 PAQVAEQFMK--------S-E---------DA------DVALAALIKLLKEKERNGSGDVDGDEDEINLDEVAILESKKL 491 (525)
Q Consensus 436 padi~~~l~~--------~-~---------~~------~~al~~l~~al~~~~~~~~~~~~~~~~~v~w~dIggl~~vK~ 491 (525)
++++...+.. . . .. ....+++..++....++..+......+.++|+||+|++++|+
T Consensus 408 g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~ 487 (806)
T 1ypw_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHH
T ss_pred hHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhh
Confidence 9988765431 0 0 00 012346677777788888777788889999999999999999
Q ss_pred HhHHHhhhccccc
Q 009791 492 KTQDQIQDKGKET 504 (525)
Q Consensus 492 ~L~e~i~w~~k~~ 504 (525)
.|++.+.|+.+..
T Consensus 488 ~l~~~v~~~~~~~ 500 (806)
T 1ypw_A 488 ELQELVQYPVEHP 500 (806)
T ss_dssp HHHTTTTSSSSSC
T ss_pred hHHHHHHhhhhch
Confidence 9999999987654
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=1e-26 Score=248.22 Aligned_cols=209 Identities=21% Similarity=0.255 Sum_probs=170.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-CCceEEEecCCcC-
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-KFDVFDLQLGNVT- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-~~~i~~l~~~~l~- 281 (525)
.++.+|++|+|.++.|+.|.+.+..++..++.|.. +..+++|+|||||||||||+||+++|+++ +.+++.++++++.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45679999999999999999999988888887764 34567899999999999999999999999 8999999988763
Q ss_pred -----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 282 -----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 282 -----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
....++.+|..+ ..|+||||||||.++. .|... ........++.||
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~~~~~-------------------------~~~~~~~~~~~lL 259 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG--SRSEN-------------------------ESEAARRIKTEFL 259 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCC--CSSCC-------------------------CCGGGHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc--CCCCc-------------------------cccHHHHHHHHHH
Confidence 235577777655 4799999999999864 22211 1233457889999
Q ss_pred hhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-C
Q 009791 355 NFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-N 433 (525)
Q Consensus 355 n~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~ 433 (525)
+.+|++... ...++||+|||+++.|||+|+| ||+..|+++.|+.++|..|++.++...+ ......+++.++..+ |
T Consensus 260 ~~l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~l~~~~l~~la~~t~G 335 (444)
T 2zan_A 260 VQMQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQ-NSLTEADFQELGRKTDG 335 (444)
T ss_dssp TTTTCSSCC-CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC-EECCHHHHHHHHHHTTT
T ss_pred HHHhCcccC-CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHcCC
Confidence 999998542 3569999999999999999999 9999999999999999999999997652 122456788888887 9
Q ss_pred CCHHHHHHHHH
Q 009791 434 ITPAQVAEQFM 444 (525)
Q Consensus 434 ~tpadi~~~l~ 444 (525)
|+++||..++.
T Consensus 336 ~sgadl~~l~~ 346 (444)
T 2zan_A 336 YSGADISIIVR 346 (444)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998765
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=3.4e-28 Score=241.39 Aligned_cols=214 Identities=28% Similarity=0.384 Sum_probs=162.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.++.+|++++|.++.++.|.+.+. ++..++.|..+|...++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 345689999999999999988665 68889999999999999999999999999999999999999999999887763
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
....++.+|..+ ..|+||||||||.+.. .+...... .........++.||+
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~--~~~~~~~~---------------------~~~~~~~~~~~~ll~ 140 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK--SRAAGGVV---------------------SGNDEREQTLNQLLA 140 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC---------------------------------CCCSCSSTTTTTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcc--cccccccC---------------------CCchhHHHHHHHHHH
Confidence 223344555444 4689999999999864 22111000 011122346778999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+++.... ...++||+|||.++.||++++|+|||+..|+++.|+.++|.++++.++.... .....+++.++..+ |+
T Consensus 141 ~l~~~~~~-~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~g~ 217 (268)
T 2r62_A 141 EMDGFGSE-NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK--LANDVNLQEVAKLTAGL 217 (268)
T ss_dssp TTTCSSCS-CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC--CCSSCCTTTTTSSSCSS
T ss_pred HhhCcccC-CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC--CCCccCHHHHHHHcCCC
Confidence 99987542 3458999999999999999999999999999999999999999999986542 11112234455555 89
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
+++||.+++.
T Consensus 218 ~g~dl~~l~~ 227 (268)
T 2r62_A 218 AGADLANIIN 227 (268)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999887654
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.9e-26 Score=235.64 Aligned_cols=210 Identities=21% Similarity=0.305 Sum_probs=167.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC-
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR- 282 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~- 282 (525)
.++.+|++|+|.++.++.|.+.+..++..++.|...+ ..++++|||||||||||++|+++|++++.+++.++++++..
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3567899999999999999999998888888777665 55789999999999999999999999999999999988743
Q ss_pred -----hhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 283 -----DSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 283 -----~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
...++.+|..+ .+|+||||||||.+.. .+... ........++.||.
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~--~~~~~-------------------------~~~~~~~~~~~lL~ 209 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS--QRGDG-------------------------EHESSRRIKTEFLV 209 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB--C-------------------------------CHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc--cCCCC-------------------------cchHHHHHHHHHHH
Confidence 24456666544 4789999999999864 22111 12344677889999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.+++.....+..++||+|||.++.||++++| ||+..++++.|+.++|.+++..++...+ .......++.++..+ |+
T Consensus 210 ~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~l~~la~~t~G~ 286 (357)
T 3d8b_A 210 QLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQ-CCLSEEEIEQIVQQSDAF 286 (357)
T ss_dssp HHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSC-BCCCHHHHHHHHHHTTTC
T ss_pred HHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHcCCC
Confidence 9999865555678999999999999999999 9999999999999999999999886542 122356778888877 89
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
++++|..++.
T Consensus 287 s~~dl~~l~~ 296 (357)
T 3d8b_A 287 SGADMTQLCR 296 (357)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999988754
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=1.3e-25 Score=221.32 Aligned_cols=212 Identities=25% Similarity=0.363 Sum_probs=164.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.++.+|++++|.++.++++.+... ++..+..+..++...++|++|+||||||||+|+++||+.++..++.++...+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 344699999999999999987655 45677889999999999999999999999999999999999999998875542
Q ss_pred ----ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
....+..+|.... .|++++|||||.+.. .+..... .........++.+++
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~--~~~~~~~----------------------~~~~~~~~~~~~ll~ 144 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR--KRGSGVG----------------------GGNDEREQTLNQLLV 144 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------------------------------CHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhc--ccCcccc----------------------ccchHHHHHHHHHHH
Confidence 1245677787764 589999999998853 1111000 011233567889999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.++|.... ..++++++||+|+.|||+++|+||||.+|+++.|+.++|.+|++.++... ......++..++..+ |+
T Consensus 145 ~l~g~~~~--~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~G~ 220 (254)
T 1ixz_A 145 EMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGF 220 (254)
T ss_dssp HHHTCCTT--CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTC
T ss_pred HHhCCCCC--CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC--CCCcccCHHHHHHHcCCC
Confidence 99987543 34788899999999999999999999999999999999999999887543 222223355677776 99
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
+++|+..++.
T Consensus 221 ~~~dl~~~~~ 230 (254)
T 1ixz_A 221 VGADLENLLN 230 (254)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999987654
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=8.4e-26 Score=236.95 Aligned_cols=212 Identities=24% Similarity=0.293 Sum_probs=168.7
Q ss_pred cccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC
Q 009791 202 KLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT 281 (525)
Q Consensus 202 ~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~ 281 (525)
...++.+|++|+|.+..++.|.+.+..+...++.|...+. .++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 3467789999999999999999999988888888877764 468999999999999999999999999999999998874
Q ss_pred ------ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHH
Q 009791 282 ------RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGL 353 (525)
Q Consensus 282 ------~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 353 (525)
....++.+|..+ ..|+||||||||.++. .+... ........+..|
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~--~~~~~-------------------------~~~~~~~~~~~l 238 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC--ERREG-------------------------EHDASRRLKTEF 238 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------------------------------CTHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc--cCCCc-------------------------cchHHHHHHHHH
Confidence 234566666554 4789999999999864 22111 122346678889
Q ss_pred hhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-
Q 009791 354 LNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI- 432 (525)
Q Consensus 354 Ln~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~- 432 (525)
|..++|+....+..++||+|||+++.||++++| ||+..|+++.|+.++|..|+..++...+ .......++.++..+
T Consensus 239 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~~~~la~~~~ 315 (389)
T 3vfd_A 239 LIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTD 315 (389)
T ss_dssp HHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC-CCSCHHHHHHHHHHTT
T ss_pred HHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcC
Confidence 999998876555679999999999999999999 9999999999999999999999987653 223456777888777
Q ss_pred CCCHHHHHHHHH
Q 009791 433 NITPAQVAEQFM 444 (525)
Q Consensus 433 ~~tpadi~~~l~ 444 (525)
|+++++|..++.
T Consensus 316 g~~~~~l~~L~~ 327 (389)
T 3vfd_A 316 GYSGSDLTALAK 327 (389)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999987654
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=7.6e-25 Score=220.50 Aligned_cols=210 Identities=22% Similarity=0.281 Sum_probs=164.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC-
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR- 282 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~- 282 (525)
.++.+|++++|.++.++.|.+.+......++.|..++ .+++++|||||||||||++++++|++++.+++.++++.+..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4567999999999999999999988888887777665 44689999999999999999999999999999999987642
Q ss_pred -----hhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 283 -----DSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 283 -----~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
...++.+|..+ .+|+||||||||.+++ .+... .........+.||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--~~~~~-------------------------~~~~~~~~~~~ll~ 146 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS--ERSSS-------------------------EHEASRRLKTEFLV 146 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSB--CC------------------------------CCSHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcc--ccccC-------------------------cchHHHHHHHHHHH
Confidence 24455555544 5799999999999875 22111 01123456778999
Q ss_pred hhcCCCCC-CCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-C
Q 009791 356 FIDGLWSS-CGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-N 433 (525)
Q Consensus 356 ~idgl~s~-~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~ 433 (525)
.+|+.... .+..++||+|||+++.||++++| ||+..++++.|+.++|..|++.++...+ .......++.++..+ |
T Consensus 147 ~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~la~~~~g 223 (297)
T 3b9p_A 147 EFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQG-SPLDTEALRRLAKITDG 223 (297)
T ss_dssp HHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGS-CCSCHHHHHHHHHHTTT
T ss_pred HHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCC
Confidence 99987543 23468999999999999999999 9999999999999999999999886542 122345677777776 9
Q ss_pred CCHHHHHHHHH
Q 009791 434 ITPAQVAEQFM 444 (525)
Q Consensus 434 ~tpadi~~~l~ 444 (525)
++++++..++.
T Consensus 224 ~~~~~l~~l~~ 234 (297)
T 3b9p_A 224 YSGSDLTALAK 234 (297)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999987654
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=1.3e-24 Score=217.49 Aligned_cols=212 Identities=25% Similarity=0.363 Sum_probs=164.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC--
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT-- 281 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~-- 281 (525)
.++.+|++++|.++.++++.+... ++..+..+..++...++|++|+||||||||+|+++||+.++..++.+++..+.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 456799999999999999887655 55677889999999999999999999999999999999999999998876542
Q ss_pred ----ChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 282 ----RDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 282 ----~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
....+..+|... ..|++++|||||.+.. .+..... .........+..+++
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~--~~~~~~~----------------------~~~~~~~~~~~~ll~ 168 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR--KRGSGVG----------------------GGNDEREQTLNQLLV 168 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHC--C------------------------------CHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhc--ccccccC----------------------CcchHHHHHHHHHHH
Confidence 124466777765 3689999999998753 1111000 011233567788999
Q ss_pred hhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC
Q 009791 356 FIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI 434 (525)
Q Consensus 356 ~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~ 434 (525)
.++|.... ..++++++||+|+.|||+++|+|||+.+|+++.|+.++|.+|++.++.... .....++..++..+ |+
T Consensus 169 ~lsgg~~~--~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~ 244 (278)
T 1iy2_A 169 EMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGF 244 (278)
T ss_dssp HHTTCCTT--CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTC
T ss_pred HHhCCCCC--CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC--CCcccCHHHHHHHcCCC
Confidence 99987543 347889999999999999999999999999999999999999998886432 22222355667666 99
Q ss_pred CHHHHHHHHH
Q 009791 435 TPAQVAEQFM 444 (525)
Q Consensus 435 tpadi~~~l~ 444 (525)
+++||..++.
T Consensus 245 ~~~dl~~l~~ 254 (278)
T 1iy2_A 245 VGADLENLLN 254 (278)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999987654
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=8.9e-28 Score=273.45 Aligned_cols=212 Identities=22% Similarity=0.351 Sum_probs=168.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC---
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT--- 281 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~--- 281 (525)
+..+|++++|.++.|+.|.+.+..++..++.|..+|+.+++++|||||||||||+|++++|++++.+++.++++++.
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 44689999999999999999888777888888888999999999999999999999999999999999999988863
Q ss_pred ---ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 282 ---RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 282 ---~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
....++.+|..+. .||||||||||.++. .|...... .......+++.||+.
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~--~r~~~~~~----------------------~~~~~~~v~~~LL~~ 607 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAK--ARGGNIGD----------------------GGGAADRVINQILTE 607 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCC--TTTTCCSH----------------------HHHHHHHHHHHHHTT
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhh--hccCCCCC----------------------cchhHHHHHHHHHHH
Confidence 3467888887764 689999999999864 33221110 112346789999999
Q ss_pred hcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCC
Q 009791 357 IDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NIT 435 (525)
Q Consensus 357 idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~t 435 (525)
||++... ..++||+|||+++.||||++|||||+.+|++++|+.++|..|++.++...+ .....+++.+++.+ ++|
T Consensus 608 ld~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~~l~~la~~t~g~s 683 (806)
T 1ypw_A 608 MDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP--VAKDVDLEFLAKMTNGFS 683 (806)
T ss_dssp CC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------CCCCSCSCGGGSSSC
T ss_pred Hhccccc--CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC--CCcccCHHHHHHhccccC
Confidence 9998654 569999999999999999999999999999999999999999999986542 11112344455555 899
Q ss_pred HHHHHHHHH
Q 009791 436 PAQVAEQFM 444 (525)
Q Consensus 436 padi~~~l~ 444 (525)
++||..++.
T Consensus 684 gadi~~l~~ 692 (806)
T 1ypw_A 684 GADLTEICQ 692 (806)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=2.6e-24 Score=217.39 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=121.6
Q ss_pred HhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC------hhHHHHHHHHh------CCCeEEEEeccc
Q 009791 238 RVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR------DSDLRTLLLST------GNRSILVIEDID 305 (525)
Q Consensus 238 ~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~------~~~L~~l~~~~------~~~sIL~iDdID 305 (525)
..+..+|+|+|||||||||||+||+++|++++.+++.++++++.+ ...++.+|..+ ..||||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 346788899999999999999999999999999999999887632 34577777665 279999999999
Q ss_pred cccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCC---------CCCCceEEEEecCC
Q 009791 306 CSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWS---------SCGDERIIVFTTNH 376 (525)
Q Consensus 306 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s---------~~~~~~ivI~TTN~ 376 (525)
.+++ .+.+.. ..........+.|++.+|+... ....+++||+|||+
T Consensus 110 ~~~~--~~~~~~-----------------------~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 110 AGAG--RMGGTT-----------------------QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND 164 (293)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred hhcC--CCCCCc-----------------------cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence 9864 111110 0112345677889999985531 12345899999999
Q ss_pred CCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcCCCHHHHH
Q 009791 377 KERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTINITPAQVA 440 (525)
Q Consensus 377 ~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~~tpadi~ 440 (525)
++.||++|+||||||.+|++ |+.++|.+|++.++... ......+..+.. +|++++|.
T Consensus 165 ~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~~~~~~---~~~~~~l~~~~~--~~~~~~l~ 221 (293)
T 3t15_A 165 FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCTGIFRTD---NVPAEDVVKIVD--NFPGQSID 221 (293)
T ss_dssp CCC--CHHHHHHHEEEEEEC--CCHHHHHHHHHHHHGGG---CCCHHHHHHHHH--HSCSCCHH
T ss_pred cccCCHHHhCCCCCceeEeC--cCHHHHHHHHHHhccCC---CCCHHHHHHHhC--CCCcccHH
Confidence 99999999999999999984 69999999999888633 223445554443 56666553
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=7.7e-19 Score=179.75 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=149.4
Q ss_pred cceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 197 RWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 197 ~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.|.. ...|.+|++++|.+..++.+...+..... +.....++||+||||||||++|+++|+.++.+++.++
T Consensus 18 ~~~~--~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 18 TYET--SLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred hhhh--ccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 4543 25678999999999999998887764432 1234568999999999999999999999999999999
Q ss_pred cCCcCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhh
Q 009791 277 LGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF 356 (525)
Q Consensus 277 ~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 356 (525)
+..+.....+...+.....+++|||||||.+. ......|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~--------------------------------------~~~~~~Ll~~ 129 (338)
T 3pfi_A 88 APMIEKSGDLAAILTNLSEGDILFIDEIHRLS--------------------------------------PAIEEVLYPA 129 (338)
T ss_dssp GGGCCSHHHHHHHHHTCCTTCEEEEETGGGCC--------------------------------------HHHHHHHHHH
T ss_pred chhccchhHHHHHHHhccCCCEEEEechhhcC--------------------------------------HHHHHHHHHH
Confidence 99888888888889888899999999999873 1234455555
Q ss_pred hcCCCC--------------CCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccH
Q 009791 357 IDGLWS--------------SCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLV 422 (525)
Q Consensus 357 idgl~s--------------~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~ 422 (525)
++...- .....+++|++||....++|+|++ ||+..|+|+.|+.+++..++..++...+ .....
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~ 206 (338)
T 3pfi_A 130 MEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLN-KTCEE 206 (338)
T ss_dssp HHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECH
T ss_pred HHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCH
Confidence 554310 000137899999999999999999 9999999999999999999998876442 12234
Q ss_pred HHHHHHHhhcCCCHHHHHHHHH
Q 009791 423 AEIETLLKTINITPAQVAEQFM 444 (525)
Q Consensus 423 ~~i~~l~~~~~~tpadi~~~l~ 444 (525)
..++.++....-.+.++.+.+.
T Consensus 207 ~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 207 KAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHH
Confidence 4556666655667777665543
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.80 E-value=4.3e-20 Score=197.59 Aligned_cols=212 Identities=10% Similarity=0.039 Sum_probs=127.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC--CceEEEecCCcCC
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK--FDVFDLQLGNVTR 282 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~--~~i~~l~~~~l~~ 282 (525)
+...|++++|.++.|+.+...+..+ ..|..+++|+|||||||||||++|+++|++++ .+++.++++.+.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3457899999999999888766433 23667789999999999999999999999999 9999999988742
Q ss_pred -----hhHHHHHHHHh-----CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHH
Q 009791 283 -----DSDLRTLLLST-----GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSG 352 (525)
Q Consensus 283 -----~~~L~~l~~~~-----~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 352 (525)
...++++|..+ ..||||||||||+++. .|.....+....... .....-...+........+.
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~--~r~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~ 175 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTP--CETENPMGGYGKTIS------HVIIGLKTAKGTKQLKLDPS 175 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEE--C--------------------CEEEEEEETTEEEEEEECHH
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhccc--ccCCCCCCCcchHHH------HHHHHHhccccchhHhhhHH
Confidence 23488888876 4799999999999985 332211100000000 00000000000111122334
Q ss_pred HhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceee--EEEcCCCCH--HHHHHHHHHHhCCcCCCcccHHHHHHH
Q 009791 353 LLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDM--HIHMSYCGP--YGFRLLAANYLGITDCEHKLVAEIETL 428 (525)
Q Consensus 353 LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~--~I~~~~p~~--~~r~~L~~~~l~~~~~~~~~~~~i~~l 428 (525)
++..++......++.++|++|||+++.+|+++.||||||. .++++.|+. ++|+++++.+. ..+++.+
T Consensus 176 ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~---------~~dl~~~ 246 (456)
T 2c9o_A 176 IFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT---------LHDLDVA 246 (456)
T ss_dssp HHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE---------HHHHHHT
T ss_pred HHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH---------HHHHHHH
Confidence 5555553222334556667899999999999999999999 566677744 55555543222 1245555
Q ss_pred Hhhc-CCCHHHHHHHH
Q 009791 429 LKTI-NITPAQVAEQF 443 (525)
Q Consensus 429 ~~~~-~~tpadi~~~l 443 (525)
+..+ | ++|+..++
T Consensus 247 a~~t~g--gadl~~l~ 260 (456)
T 2c9o_A 247 NARPQG--GQDILSMM 260 (456)
T ss_dssp C---------------
T ss_pred HHhCCC--hhHHHHHH
Confidence 5544 4 67776655
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.78 E-value=5.2e-18 Score=172.11 Aligned_cols=192 Identities=18% Similarity=0.188 Sum_probs=146.7
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD 283 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~ 283 (525)
..|.+|++++|.+..++.+.+.+...... ...+.++||+||||||||++|+++|+.++.+++.+++..+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 46779999999999988888777644321 1245689999999999999999999999999999999998888
Q ss_pred hHHHHHHHH-hCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCC-
Q 009791 284 SDLRTLLLS-TGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLW- 361 (525)
Q Consensus 284 ~~L~~l~~~-~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~- 361 (525)
.++...+.. ...+++|||||||.+.. .....|+..++...
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~--------------------------------------~~~~~L~~~l~~~~~ 119 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSR--------------------------------------QAEEHLYPAMEDFVM 119 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCH--------------------------------------HHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHhccCCCEEEEECCccccc--------------------------------------chHHHHHHHHHhhhh
Confidence 888888877 57889999999997731 12333444444321
Q ss_pred ----CC---------CCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHH
Q 009791 362 ----SS---------CGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETL 428 (525)
Q Consensus 362 ----s~---------~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l 428 (525)
.. ....+++|+|||.++.++++|.+ ||+..++++.|+.+++..++..++...+ .....+.++.+
T Consensus 120 ~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l 196 (324)
T 1hqc_A 120 DIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEI 196 (324)
T ss_dssp EECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHH
T ss_pred HHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHH
Confidence 00 01247899999999999999998 9999999999999999999998886542 12234556667
Q ss_pred HhhcCCCHHHHHHHHH
Q 009791 429 LKTINITPAQVAEQFM 444 (525)
Q Consensus 429 ~~~~~~tpadi~~~l~ 444 (525)
+...+-.|.++.+.+.
T Consensus 197 ~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 197 GRRSRGTMRVAKRLFR 212 (324)
T ss_dssp HHHSCSCHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHH
Confidence 7666777888777654
No 33
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.78 E-value=7e-20 Score=193.76 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=73.3
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCC-CCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC-------
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGR-AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT------- 281 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~-~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~------- 281 (525)
+.|+|.++.|+.|...+....++...+...+. .+++++||+||||||||++++++|+.++.+++.++++.+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36899999999998888766655544444433 3678999999999999999999999999999999986652
Q ss_pred -ChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC
Q 009791 282 -RDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL 360 (525)
Q Consensus 282 -~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl 360 (525)
.+..++.+|..+.. ++++||+|.+.+. .......++++.||+.|||+
T Consensus 95 d~e~~lr~lf~~a~~--~~~~De~d~~~~~------------------------------~~~~~e~rvl~~LL~~~dg~ 142 (444)
T 1g41_A 95 EVDSIIRDLTDSAMK--LVRQQEIAKNRAR------------------------------AEDVAEERILDALLPPAKNQ 142 (444)
T ss_dssp CTHHHHHHHHHHHHH--HHHHHHHHSCC----------------------------------------------------
T ss_pred cHHHHHHHHHHHHHh--cchhhhhhhhhcc------------------------------chhhHHHHHHHHHHHHhhcc
Confidence 24566777665432 3458888865321 01123467899999999999
Q ss_pred CCCCCCceEEEEe-cCCCCCCCccccCCCceeeEEEcCCCCHH-HHHHHH
Q 009791 361 WSSCGDERIIVFT-TNHKERLDPALLRPGRMDMHIHMSYCGPY-GFRLLA 408 (525)
Q Consensus 361 ~s~~~~~~ivI~T-TN~~~~LDpaLlRpGRfd~~I~~~~p~~~-~r~~L~ 408 (525)
.+.. . + +++ ||+++.|||||+||||||++|+++.|+.. .+.+|+
T Consensus 143 ~~~~--~-v-~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 143 WGEV--E-N-HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------------------------------
T ss_pred cccc--c-c-ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 7642 2 3 444 99999999999999999999999999987 566654
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=6.2e-18 Score=170.55 Aligned_cols=170 Identities=16% Similarity=0.235 Sum_probs=131.3
Q ss_pred cc-ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCc---ceeeEeCCCCCcHHHHHHHHHHHcC-------CceEEEec
Q 009791 209 FD-TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWK---RGYLLYGPPGTGKSSLVAAMANYLK-------FDVFDLQL 277 (525)
Q Consensus 209 f~-~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~---rg~LL~GppGTGKTsLa~AiA~~l~-------~~i~~l~~ 277 (525)
++ +|+|.++.|+.|.+.+..+. .+..+.+.|+..+ .++|||||||||||++|+++|+.++ .+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 69999999999999887655 3666777776554 3599999999999999999999983 38899988
Q ss_pred CCcCC------hhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHH
Q 009791 278 GNVTR------DSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLS 351 (525)
Q Consensus 278 ~~l~~------~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 351 (525)
..+.. ...+..+|..+ .++||||||||.++. .+.. .......++
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~--~~~~---------------------------~~~~~~~~~ 157 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYR--PDNE---------------------------RDYGQEAIE 157 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCC--CC------------------------------CCTHHHHH
T ss_pred HHhhhhcccccHHHHHHHHHhc-CCCEEEEEChhhhcc--CCCc---------------------------ccccHHHHH
Confidence 87642 34566666655 578999999999863 1110 112345778
Q ss_pred HHhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 352 GLLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 352 ~LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
.|++.++.. ...++||+|||..+ .++|+|++ ||+.+|+|+.|+.+++..|+..++...
T Consensus 158 ~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 158 ILLQVMENN----RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp HHHHHHHHC----TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC----CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 889888864 24578889998653 36899999 999999999999999999999988644
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.72 E-value=2.2e-16 Score=149.50 Aligned_cols=178 Identities=13% Similarity=0.142 Sum_probs=125.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEecC
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQLG 278 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~~ 278 (525)
..|.+|++++|.++.++.|.+.+.. + ...++||+||||||||++++++++.+ ...++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 5788999999999888877665531 1 12359999999999999999999986 4567888887
Q ss_pred CcCChhHHHHHHHHh--------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHH
Q 009791 279 NVTRDSDLRTLLLST--------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTL 350 (525)
Q Consensus 279 ~l~~~~~L~~l~~~~--------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (525)
.......+...+... ..+.||+|||+|.+.. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------------------------------~~~ 119 (226)
T 2chg_A 78 DERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------------------------------DAQ 119 (226)
T ss_dssp CTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------------------------------------HHH
T ss_pred cccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------------------------------------HHH
Confidence 766555555444322 4688999999998731 134
Q ss_pred HHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHh
Q 009791 351 SGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLK 430 (525)
Q Consensus 351 s~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~ 430 (525)
..|+..++.. .....+|+|||.++.+++++.+ |+. .++++.|+.++...++..++...+ .......++.++.
T Consensus 120 ~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~ 191 (226)
T 2chg_A 120 AALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEG-VKITEDGLEALIY 191 (226)
T ss_dssp HHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHH
T ss_pred HHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 4566666553 2347888999999999999999 887 899999999999999988764321 1122334444444
Q ss_pred hcCCCHHHHH
Q 009791 431 TINITPAQVA 440 (525)
Q Consensus 431 ~~~~tpadi~ 440 (525)
.++-.+..+.
T Consensus 192 ~~~g~~r~l~ 201 (226)
T 2chg_A 192 ISGGDFRKAI 201 (226)
T ss_dssp HHTTCHHHHH
T ss_pred HcCCCHHHHH
Confidence 4444444433
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=1.8e-16 Score=157.47 Aligned_cols=215 Identities=19% Similarity=0.211 Sum_probs=136.0
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC---C----
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT---R---- 282 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~---~---- 282 (525)
+.+++..+..+.++.....+. ......+...++++|||||||||||++|+++|+.++.+++.+++++.. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 446666665566665432222 122334567788999999999999999999999999999999876531 1
Q ss_pred hhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC
Q 009791 283 DSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL 360 (525)
Q Consensus 283 ~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl 360 (525)
...++.+|..+ ..++||+|||||.+++. +.. ........+..|+..+++.
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~--~~~--------------------------~~~~~~~~l~~L~~~~~~~ 161 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDY--VPI--------------------------GPRFSNLVLQALLVLLKKA 161 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTC--BTT--------------------------TTBCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhcc--CCC--------------------------ChhHHHHHHHHHHHHhcCc
Confidence 14566677654 46899999999998641 110 1112345666777777765
Q ss_pred CCCCCCceEEEEecCCCCCCCc-cccCCCceeeEEEcCCCCH-HHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CC---
Q 009791 361 WSSCGDERIIVFTTNHKERLDP-ALLRPGRMDMHIHMSYCGP-YGFRLLAANYLGITDCEHKLVAEIETLLKTI-NI--- 434 (525)
Q Consensus 361 ~s~~~~~~ivI~TTN~~~~LDp-aLlRpGRfd~~I~~~~p~~-~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~--- 434 (525)
.. .+..++||+|||.++.||+ .+.+ ||+..|++|.++. ++...++.... ......+..++... ++
T Consensus 162 ~~-~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~~~------~~~~~~~~~l~~~~~g~~~~ 232 (272)
T 1d2n_A 162 PP-QGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALELLG------NFKDKERTTIAQQVKGKKVW 232 (272)
T ss_dssp CS-TTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHHHT------CSCHHHHHHHHHHHTTSEEE
T ss_pred cC-CCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHhcC------CCCHHHHHHHHHHhcCCCcc
Confidence 33 2456889999999999998 5555 9999999987665 55555554422 11234455555444 33
Q ss_pred -CHHHHHHHHHc--CCCHHHHHHHHHHHHHHhh
Q 009791 435 -TPAQVAEQFMK--SEDADVALAALIKLLKEKE 464 (525)
Q Consensus 435 -tpadi~~~l~~--~~~~~~al~~l~~al~~~~ 464 (525)
...++.+.+.. .......++.+..++++..
T Consensus 233 g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 233 IGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp ECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcC
Confidence 44555444432 2233345555555554443
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.71 E-value=1.4e-16 Score=164.54 Aligned_cols=185 Identities=15% Similarity=0.138 Sum_probs=123.5
Q ss_pred CCC-CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC--ceEEEecCCcC
Q 009791 205 HPA-TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF--DVFDLQLGNVT 281 (525)
Q Consensus 205 ~~~-~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~--~i~~l~~~~l~ 281 (525)
.|. +|++++|.+..++.+...+.... .|..+++++|||||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~--------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIR--------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHH--------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 344 49999999999887654443221 24555689999999999999999999999985 66666654411
Q ss_pred --------------------------------------------------C-----hhHHHHHHHHh-------C----C
Q 009791 282 --------------------------------------------------R-----DSDLRTLLLST-------G----N 295 (525)
Q Consensus 282 --------------------------------------------------~-----~~~L~~l~~~~-------~----~ 295 (525)
. ...++..+... . .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 1 23344444322 1 2
Q ss_pred CeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEec-
Q 009791 296 RSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTT- 374 (525)
Q Consensus 296 ~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TT- 374 (525)
|+||||||||.+. ...++.|+..++... ..+++++|.
T Consensus 190 ~~vl~IDEi~~l~--------------------------------------~~~~~~L~~~le~~~----~~~~ii~t~~ 227 (368)
T 3uk6_A 190 PGVLFIDEVHMLD--------------------------------------IESFSFLNRALESDM----APVLIMATNR 227 (368)
T ss_dssp BCEEEEESGGGSB--------------------------------------HHHHHHHHHHTTCTT----CCEEEEEESC
T ss_pred CceEEEhhccccC--------------------------------------hHHHHHHHHHhhCcC----CCeeeeeccc
Confidence 6899999999773 234566677666532 224444443
Q ss_pred ----------CCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcC-CCHHHHHHHH
Q 009791 375 ----------NHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTIN-ITPAQVAEQF 443 (525)
Q Consensus 375 ----------N~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~-~tpadi~~~l 443 (525)
|.++.++|+|++ ||.. |+|+.|+.+++..+++.++...+ .....+.++.++..+. .+++++.+++
T Consensus 228 ~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~-~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 228 GITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEED-VEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp SEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 357889999999 9977 89999999999999998875432 1222344455554443 5666555443
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.70 E-value=1.6e-16 Score=161.57 Aligned_cols=158 Identities=17% Similarity=0.136 Sum_probs=122.4
Q ss_pred CcceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 196 IRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 196 ~~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
..|.. ...|.+|++++|.++.++.|.+.+. ....+..+|++||||||||++++++|++++.+++.+
T Consensus 14 ~~~~~--k~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 14 HILEQ--KYRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp SSHHH--HSCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred chHHH--hhCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 35654 3678999999999998887776654 123456789999999999999999999999999999
Q ss_pred ecCCcCChhHHHHHHHHh----C---CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHH
Q 009791 276 QLGNVTRDSDLRTLLLST----G---NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHML 348 (525)
Q Consensus 276 ~~~~l~~~~~L~~l~~~~----~---~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (525)
+++... ...++..+... + .+.||+|||+|.+.. ..
T Consensus 80 ~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------------------------------~~ 121 (324)
T 3u61_B 80 NGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------------------------------AE 121 (324)
T ss_dssp ETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------------------------------HH
T ss_pred cccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------------------------------HH
Confidence 988754 55555554432 1 578999999998731 12
Q ss_pred HHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 349 TLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 349 ~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
..+.|+..++... ..+.+|+|||.+..++++|++ |+. .++|+.|+.+++..++..++
T Consensus 122 ~~~~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 122 SQRHLRSFMEAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp HHHHHHHHHHHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 3455666666542 346888999999999999999 885 69999999999888877665
No 39
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.70 E-value=7.6e-17 Score=161.99 Aligned_cols=173 Identities=19% Similarity=0.280 Sum_probs=121.9
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHh-CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC------
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRV-GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR------ 282 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~------ 282 (525)
+.++|.++.++.|...+............. +...+.++|||||||||||++++++|+.++.+++.++++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358899999999988776543221111110 1134678999999999999999999999999999999987642
Q ss_pred --hhHHHHHHHHh-------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHH
Q 009791 283 --DSDLRTLLLST-------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGL 353 (525)
Q Consensus 283 --~~~L~~l~~~~-------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 353 (525)
...++.++... ..++||||||||.+.. ..... +.........+.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~--~~~~~------------------------~~~~~~~~~~~~L 148 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK--KGEYS------------------------GADVSREGVQRDL 148 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC--CSSCC------------------------SSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc--ccccc------------------------ccchhHHHHHHHH
Confidence 23466665533 2479999999999853 11100 0011223346778
Q ss_pred hhhhcCCCCC------CCCceEEEEe----cCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHH
Q 009791 354 LNFIDGLWSS------CGDERIIVFT----TNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAAN 410 (525)
Q Consensus 354 Ln~idgl~s~------~~~~~ivI~T----TN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~ 410 (525)
+..+++.... ....+++|+| ++.+..++|+|++ ||+.+|+|+.|+.+++..|++.
T Consensus 149 l~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 149 LPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp HHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred HHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 8888864210 1134677777 5688999999998 9999999999999999999884
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.68 E-value=1.2e-15 Score=145.91 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=128.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++++|.++.++.|.+.+.. + ..++.++|+||||||||++++++++.++.
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 6778999999999988877766531 1 22457999999999999999999998854
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++.........++.++.... .+.||+|||+|.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------------------- 139 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------- 139 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-------------------------
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc-------------------------
Confidence 334444443233455666666542 47899999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
...+..|+..++.. +..+++|+|||.++.+++++.+ |+ ..|+++.++.++..+++..++.
T Consensus 140 -------------~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 140 -------------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp -------------HHHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHH
Confidence 22456677777653 3458899999999999999988 65 6899999999999999998875
Q ss_pred CcCCCcccHHHHHHHHhhcCCCHHHHHHH
Q 009791 414 ITDCEHKLVAEIETLLKTINITPAQVAEQ 442 (525)
Q Consensus 414 ~~~~~~~~~~~i~~l~~~~~~tpadi~~~ 442 (525)
..+ .......++.+++.++-.|.++...
T Consensus 200 ~~~-~~~~~~~~~~l~~~~~G~~~~~~~~ 227 (250)
T 1njg_A 200 EEH-IAHEPRALQLLARAAEGSLRDALSL 227 (250)
T ss_dssp HTT-CCBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 331 1222344555555554466655543
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.68 E-value=1.7e-17 Score=171.96 Aligned_cols=175 Identities=18% Similarity=0.196 Sum_probs=118.0
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHH-hCC-CCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCC------
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKR-VGR-AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTR------ 282 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~-~g~-~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~------ 282 (525)
.|+|.+..++.|...+............ .+. ..++++||+||||||||++|++||+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3689999999998887644433211000 111 25678999999999999999999999999999999987652
Q ss_pred --hhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 283 --DSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 283 --~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
...+..++... ..++||||||||.+.. .+...... .......+.+.||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~--~~~~~~~~----------------------~~~~~~~~~~~Ll 151 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR--KSDNPSIT----------------------RDVSGEGVQQALL 151 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC--CSSCC-------------------------CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc--cccccccc----------------------cccchHHHHHHHH
Confidence 23455565544 3589999999998864 22221110 1112234788999
Q ss_pred hhhcCCCCC-----------------CCCceEEEEecCCC----------CC----------------------------
Q 009791 355 NFIDGLWSS-----------------CGDERIIVFTTNHK----------ER---------------------------- 379 (525)
Q Consensus 355 n~idgl~s~-----------------~~~~~ivI~TTN~~----------~~---------------------------- 379 (525)
..|||.... ...++++|+|+|.. ..
T Consensus 152 ~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~ 231 (363)
T 3hws_A 152 KLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEP 231 (363)
T ss_dssp HHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCH
T ss_pred HHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCH
Confidence 999964211 01223444444421 11
Q ss_pred -------CCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 380 -------LDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 380 -------LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
++|+|+. |||..+.++.|+.+.+..|+...
T Consensus 232 ~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~ 268 (363)
T 3hws_A 232 EDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKEP 268 (363)
T ss_dssp HHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred HHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHH
Confidence 7888887 99999999999999999998863
No 42
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=9.2e-16 Score=166.49 Aligned_cols=173 Identities=16% Similarity=0.280 Sum_probs=119.1
Q ss_pred CcceeccccCCCCccccccChHHHHHHHHHHHHHHHhH-HHHHHhCC---CCcceeeEeCCCCCcHHHHHHHHHHHcCCc
Q 009791 196 IRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRK-EFYKRVGR---AWKRGYLLYGPPGTGKSSLVAAMANYLKFD 271 (525)
Q Consensus 196 ~~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~-~~y~~~g~---~~~rg~LL~GppGTGKTsLa~AiA~~l~~~ 271 (525)
..|.. ...|.+|++|+|.++.++.|.+.+..+.... ..|...|. +.++++||+||||||||++|+++|++++++
T Consensus 27 ~lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 27 KLWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35654 3688899999999999999988887654322 22333333 356899999999999999999999999999
Q ss_pred eEEEecCCcCChhHHHHHHH-------------Hh-------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhh
Q 009791 272 VFDLQLGNVTRDSDLRTLLL-------------ST-------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331 (525)
Q Consensus 272 i~~l~~~~l~~~~~L~~l~~-------------~~-------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (525)
++.+++++......+...+. .. ..++||+|||+|.+...
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~--------------------- 163 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--------------------- 163 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT---------------------
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh---------------------
Confidence 99999998765543333322 11 46789999999988530
Q ss_pred hhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHH
Q 009791 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANY 411 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~ 411 (525)
....+..|++.++.. +..+|+++++.....+++ +. |+...|.|+.|+.+++..++...
T Consensus 164 --------------~~~~l~~L~~~l~~~----~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 164 --------------DRGGVGQLAQFCRKT----STPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp --------------STTHHHHHHHHHHHC----SSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHH
T ss_pred --------------hHHHHHHHHHHHHhc----CCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHH
Confidence 011345566666542 112344443333344543 44 44568999999999999888776
Q ss_pred hC
Q 009791 412 LG 413 (525)
Q Consensus 412 l~ 413 (525)
+.
T Consensus 222 ~~ 223 (516)
T 1sxj_A 222 AI 223 (516)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.66 E-value=1.3e-16 Score=147.51 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=106.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceE
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVF 273 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~ 273 (525)
..|.+|++++|.++..+.+.+.+. ...++++||+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhhccccccccchHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 346789999999888777766542 1335789999999999999999999997 78888
Q ss_pred EEecCCcCC--------hhHHHHHHHH---hCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCC
Q 009791 274 DLQLGNVTR--------DSDLRTLLLS---TGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGG 342 (525)
Q Consensus 274 ~l~~~~l~~--------~~~L~~l~~~---~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
.+++..+.. ...+..++.. ...++||+|||+|.+... +....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~--~~~~~------------------------- 135 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGA--GKADG------------------------- 135 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------------------------------
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhcc--Ccccc-------------------------
Confidence 888765421 1234455443 356889999999998531 10000
Q ss_pred CchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHH
Q 009791 343 KGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLA 408 (525)
Q Consensus 343 ~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~ 408 (525)
.. .....|...++. ..+.+|+|||.++ .+|+++++ ||+ .|+++.|+.+++.+|+
T Consensus 136 ~~---~~~~~l~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 136 AM---DAGNMLKPALAR------GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CC---CCHHHHHHHHHT------TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred hH---HHHHHHHHhhcc------CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 00 112222233322 2467888888876 78999999 998 6999999999988764
No 44
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=4.5e-16 Score=169.91 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=113.0
Q ss_pred ccccccChHHHHHHHHHHHHHHHhHHHHHHhCCC-CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh----
Q 009791 209 FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA-WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD---- 283 (525)
Q Consensus 209 f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~-~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~---- 283 (525)
.++++|.+++++.+.+.+.... +... .+..+||+||||||||+|+++||+.++.++..++++.+...
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~--------~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQK--------LTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHH--------HSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHH--------hcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 4568999999988876543221 1111 34579999999999999999999999999999998875332
Q ss_pred -----------hHHHHHHHHhC-CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHH
Q 009791 284 -----------SDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLS 351 (525)
Q Consensus 284 -----------~~L~~l~~~~~-~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 351 (525)
..+...|..+. ...||||||||.+.. .+ .....+
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~--~~--------------------------------~~~~~~ 197 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSS--DF--------------------------------RGDPSS 197 (543)
T ss_dssp ------------CHHHHHHTTCSSSEEEEEEESSSCC-------------------------------------------
T ss_pred hHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhh--hh--------------------------------ccCHHH
Confidence 22344455543 345999999998853 11 111345
Q ss_pred HHhhhhcCCCCC-----------CCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 352 GLLNFIDGLWSS-----------CGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 352 ~LLn~idgl~s~-----------~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
.||..||..... .-..++||+|||.++.+||+|++ ||+ .|+|+.|+.+++..|++.++
T Consensus 198 ~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 198 AMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred HHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 677777753211 01357999999999999999999 996 69999999999999999887
No 45
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.65 E-value=2.1e-15 Score=151.95 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=116.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEec
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQL 277 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~ 277 (525)
...|.+|++++|.++.++.|.+.+. . |. . ..+|||||||||||++++++|+.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~-~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE----R-------KN-I-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTT----T-------TC-C-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHh----C-------CC-C-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 3678899999999998887766543 1 21 2 249999999999999999999997 456788888
Q ss_pred CCcCChhHHHHHHHH----h----CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHH
Q 009791 278 GNVTRDSDLRTLLLS----T----GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLT 349 (525)
Q Consensus 278 ~~l~~~~~L~~l~~~----~----~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (525)
++......++..+.. . ..+.||+|||+|.+. ...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------------------------------------~~~ 118 (319)
T 2chq_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------------------------------------ADA 118 (319)
T ss_dssp TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC--------------------------------------HHH
T ss_pred ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC--------------------------------------HHH
Confidence 765433333332221 1 357899999999773 123
Q ss_pred HHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCc
Q 009791 350 LSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 350 ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
.+.|+..++.. +..+++|++||.++.+++++.+ |+. .++++.|+.++...++..++...
T Consensus 119 ~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~ 177 (319)
T 2chq_A 119 QAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKE 177 (319)
T ss_dssp HHTTGGGTSSS----SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc----CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHc
Confidence 45677777653 2457888999999999999998 775 79999999999999998877544
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.63 E-value=3.7e-15 Score=158.76 Aligned_cols=150 Identities=21% Similarity=0.307 Sum_probs=111.5
Q ss_pred cCCCCccccccChHHH---HHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc
Q 009791 204 EHPATFDTLAMEPDLK---ATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K---~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l 280 (525)
-.|.+|++++|.+.++ +.|...+. . |. ..++|||||||||||+++++||+.++.+++.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~----~-------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIE----A-------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHH----H-------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHH----c-------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 5688999999999887 45544442 1 11 2589999999999999999999999999999987654
Q ss_pred CChhHHHHHHHHh------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 281 TRDSDLRTLLLST------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 281 ~~~~~L~~l~~~~------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
....++.++..+ ..++||||||||.+.. .....||
T Consensus 87 -~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------------------------------------~~q~~LL 127 (447)
T 3pvs_A 87 -GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------------------------------------SQQDAFL 127 (447)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------------------------------CCH
T ss_pred -CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH--------------------------------------HHHHHHH
Confidence 345666666544 3689999999998732 1234477
Q ss_pred hhhcCCCCCCCCceEEEE-ec-CCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 355 NFIDGLWSSCGDERIIVF-TT-NHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 355 n~idgl~s~~~~~~ivI~-TT-N~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
..++.- .+++|+ || |....++++|++ |+. .+.|+.|+.++...++..++..
T Consensus 128 ~~le~~------~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 128 PHIEDG------TITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp HHHHTT------SCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred HHHhcC------ceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 777751 245555 44 444689999999 876 6789999999999999998764
No 47
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.61 E-value=2e-14 Score=148.19 Aligned_cols=153 Identities=20% Similarity=0.331 Sum_probs=116.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------------
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF------------- 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------- 270 (525)
..|.+|++++|.++.++.+.+.+.. | ..+..|||+||||||||++++++|+.++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 6788999999999888877766531 1 23457999999999999999999999864
Q ss_pred -----------ceEEEecCCcCChhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 271 -----------DVFDLQLGNVTRDSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 271 -----------~i~~l~~~~l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
+++.++...-.....++.++.... .+.||+|||+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------------------- 132 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------- 132 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-------------------------
T ss_pred HHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-------------------------
Confidence 345555543233345666666543 46899999999762
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.|+..++.. +..+++|++||.++.+++++.+ |+ ..++++.|+.++...++..++.
T Consensus 133 -------------~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~ 192 (373)
T 1jr3_A 133 -------------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN 192 (373)
T ss_dssp -------------HHHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHH
Confidence 22456677777763 3458888999999999999988 66 6899999999999999988774
No 48
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=8.7e-15 Score=147.87 Aligned_cols=184 Identities=13% Similarity=0.159 Sum_probs=125.8
Q ss_pred cceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC-----Cc
Q 009791 197 RWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK-----FD 271 (525)
Q Consensus 197 ~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~-----~~ 271 (525)
.|.. ...|.+|++++|.++.++.|...+.. |. ..++|||||||||||++++++|+.+. .+
T Consensus 14 ~~~~--k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 14 PWVE--KYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp CHHH--HTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred chhh--ccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 4543 36788999999999988877765531 21 12499999999999999999999873 34
Q ss_pred eEEEecCCcCChhHHHHHHHH---h-----CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCC
Q 009791 272 VFDLQLGNVTRDSDLRTLLLS---T-----GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGK 343 (525)
Q Consensus 272 i~~l~~~~l~~~~~L~~l~~~---~-----~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
++.+++++......++..+.. . ..+.||+|||+|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------------------------------- 123 (327)
T 1iqp_A 79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT----------------------------------- 123 (327)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------------------------------
T ss_pred eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------------------------------
Confidence 777877654322333332221 1 357899999999773
Q ss_pred chhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHH
Q 009791 344 GQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVA 423 (525)
Q Consensus 344 ~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~ 423 (525)
....+.|+..++.. +....+|+|||.++.+++++.+ |+. .++++.++.++...++..++...+ .....+
T Consensus 124 ---~~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~-~~~~~~ 192 (327)
T 1iqp_A 124 ---QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEG-LELTEE 192 (327)
T ss_dssp ---HHHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTT-CEECHH
T ss_pred ---HHHHHHHHHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcC-CCCCHH
Confidence 12345677777653 2347788899999999999998 776 799999999999999888775442 112233
Q ss_pred HHHHHHhhcCCCHHHHHH
Q 009791 424 EIETLLKTINITPAQVAE 441 (525)
Q Consensus 424 ~i~~l~~~~~~tpadi~~ 441 (525)
.++.++..++-++..+.+
T Consensus 193 ~~~~l~~~~~g~~r~~~~ 210 (327)
T 1iqp_A 193 GLQAILYIAEGDMRRAIN 210 (327)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHH
Confidence 444444444444544433
No 49
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=1.1e-14 Score=146.75 Aligned_cols=157 Identities=13% Similarity=0.188 Sum_probs=117.7
Q ss_pred cceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCc
Q 009791 197 RWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFD 271 (525)
Q Consensus 197 ~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~ 271 (525)
.|.. ...|.+|++++|.++.++.|.+.+. . | ..+. +|||||||||||++++++|+.+ +.+
T Consensus 10 ~~~~--~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 74 (323)
T 1sxj_B 10 PWVE--KYRPQVLSDIVGNKETIDRLQQIAK----D-------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADG 74 (323)
T ss_dssp CHHH--HTCCSSGGGCCSCTHHHHHHHHHHH----S-------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred cHHH--hcCCCCHHHHHCCHHHHHHHHHHHH----c-------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCC
Confidence 4543 3678899999999998887776543 1 2 2233 9999999999999999999996 456
Q ss_pred eEEEecCCcCChhHHHHHHHHh--------C-CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCC
Q 009791 272 VFDLQLGNVTRDSDLRTLLLST--------G-NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGG 342 (525)
Q Consensus 272 i~~l~~~~l~~~~~L~~l~~~~--------~-~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
++.+++++..+...++.++... . .+.||+|||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------------------------- 121 (323)
T 1sxj_B 75 VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------------------------- 121 (323)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------------------------
T ss_pred EEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------------------------
Confidence 7888877655555666555432 2 378999999998731
Q ss_pred CchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 343 KGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 343 ~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
...+.|+..++.. +...++|++||.++.+++++.+ |+. .++|+.|+.++...++..++.
T Consensus 122 -----~~~~~L~~~le~~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 122 -----GAQQALRRTMELY----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp -----HHHHTTHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcc----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHH
Confidence 2345566666653 2347788889999999999998 664 899999999999999987764
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=6.5e-15 Score=150.74 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=115.6
Q ss_pred cceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC------C
Q 009791 197 RWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK------F 270 (525)
Q Consensus 197 ~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~------~ 270 (525)
.|.. ...|.+|++++|.++.++.|...+. . | . ..++|||||||||||++++++|+.++ .
T Consensus 26 ~~~~--k~~p~~~~~i~g~~~~~~~l~~~l~----~-------~-~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 26 PWVE--KYRPKNLDEVTAQDHAVTVLKKTLK----S-------A-N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp CHHH--HTCCSSTTTCCSCCTTHHHHHHHTT----C-------T-T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHH--hcCCCCHHHhhCCHHHHHHHHHHHh----c-------C-C-CCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 4554 3678899999999998877766542 1 1 1 13499999999999999999999864 4
Q ss_pred ceEEEecCCcCChhHHHHHHH---Hh---------------CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhh
Q 009791 271 DVFDLQLGNVTRDSDLRTLLL---ST---------------GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAV 332 (525)
Q Consensus 271 ~i~~l~~~~l~~~~~L~~l~~---~~---------------~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (525)
.++.+++++......++..+. .. ..+.||+|||+|.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------------------- 147 (353)
T 1sxj_D 91 RILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------------------- 147 (353)
T ss_dssp SEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------------------
T ss_pred ceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------------------
Confidence 678888877544444433322 11 2456999999997731
Q ss_pred hccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 333 RKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
...+.|+..++... ....+|++||+++.++|++.+ |+. .++++.|+.++...++...+
T Consensus 148 ---------------~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 148 ---------------DAQSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp ---------------HHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHH
Confidence 23456777776542 235677788999999999998 886 79999999999999888876
Q ss_pred CC
Q 009791 413 GI 414 (525)
Q Consensus 413 ~~ 414 (525)
..
T Consensus 206 ~~ 207 (353)
T 1sxj_D 206 EQ 207 (353)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.60 E-value=6.3e-15 Score=148.43 Aligned_cols=160 Identities=15% Similarity=0.243 Sum_probs=114.1
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHH
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDL 286 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L 286 (525)
+.++|.+..++.|...+......- .....+...+||+||||||||++|+++|+.+ +.+++.++|+.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 457788888888887775432110 0001123469999999999999999999998 566999999877543322
Q ss_pred HHHH---------------H---HhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHH
Q 009791 287 RTLL---------------L---STGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHML 348 (525)
Q Consensus 287 ~~l~---------------~---~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (525)
..++ . .....+||||||||.+. ..
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~--------------------------------------~~ 134 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH--------------------------------------PD 134 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC--------------------------------------HH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC--------------------------------------HH
Confidence 2222 1 12345899999999762 23
Q ss_pred HHHHHhhhhcCCCCCCC-------CceEEEEecCC--------------------------CCCCCccccCCCceeeEEE
Q 009791 349 TLSGLLNFIDGLWSSCG-------DERIIVFTTNH--------------------------KERLDPALLRPGRMDMHIH 395 (525)
Q Consensus 349 ~ls~LLn~idgl~s~~~-------~~~ivI~TTN~--------------------------~~~LDpaLlRpGRfd~~I~ 395 (525)
..+.|+..|+......+ ...++|+|||. ...++|+|+. ||+..+.
T Consensus 135 ~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~ 212 (311)
T 4fcw_A 135 VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVV 212 (311)
T ss_dssp HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEE
T ss_pred HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEE
Confidence 55667777764321111 24789999998 5578999998 9999999
Q ss_pred cCCCCHHHHHHHHHHHhC
Q 009791 396 MSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 396 ~~~p~~~~r~~L~~~~l~ 413 (525)
+++|+.+++..|+..++.
T Consensus 213 ~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 213 FRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp CCCCCHHHHHHHHHHHTH
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999999998875
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.59 E-value=4.4e-15 Score=151.55 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=108.5
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHH
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDL 286 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L 286 (525)
..++.++|.++.++.+...+.. ++++|||||||||||++++++|+.++.+++.++++.-....++
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 3457888988888777655431 3589999999999999999999999999999988543222222
Q ss_pred HHHHH---------HhCC---CeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHh
Q 009791 287 RTLLL---------STGN---RSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLL 354 (525)
Q Consensus 287 ~~l~~---------~~~~---~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 354 (525)
..... .... .+||||||||.+. ..+.+.|+
T Consensus 89 ~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~--------------------------------------~~~~~~Ll 130 (331)
T 2r44_A 89 IGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSP--------------------------------------AKVQSALL 130 (331)
T ss_dssp HEEEEEETTTTEEEEEECTTCSSEEEEETGGGSC--------------------------------------HHHHHHHH
T ss_pred CCceeecCCCCceEeccCcccccEEEEEccccCC--------------------------------------HHHHHHHH
Confidence 11000 0012 3799999999762 12445555
Q ss_pred hhhcCC-------CCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 355 NFIDGL-------WSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 355 n~idgl-------~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
..++.. ....+..++||+|+|..+ .|+++|++ ||+.++++++|+.+++.+|++..+..
T Consensus 131 ~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 131 ECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred HHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 555421 111233567888888553 38999999 99999999999999999999988764
No 53
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.58 E-value=4.2e-15 Score=143.10 Aligned_cols=185 Identities=14% Similarity=0.142 Sum_probs=114.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC---CceEEEecCCc
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK---FDVFDLQLGNV 280 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~~~~l 280 (525)
.++.+|+++++.+. .+.+++.+..+... +.++++||+||||||||++++++|+++. ..++.+++..+
T Consensus 22 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 22 PDDETFTSYYPAAG-NDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CTTCSTTTSCC--C-CHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCCChhhccCCCC-CHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45579999987321 22344444444331 2457899999999999999999999884 78888888765
Q ss_pred CChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC
Q 009791 281 TRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL 360 (525)
Q Consensus 281 ~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl 360 (525)
... +.+.+.....+.||+|||+|.+.. . ......|+..++..
T Consensus 92 ~~~--~~~~~~~~~~~~vliiDe~~~~~~---------------------------------~---~~~~~~l~~~l~~~ 133 (242)
T 3bos_A 92 ASI--STALLEGLEQFDLICIDDVDAVAG---------------------------------H---PLWEEAIFDLYNRV 133 (242)
T ss_dssp GGS--CGGGGTTGGGSSEEEEETGGGGTT---------------------------------C---HHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHhccCCCEEEEeccccccC---------------------------------C---HHHHHHHHHHHHHH
Confidence 321 222233345689999999998732 0 11123344444433
Q ss_pred CCCCCCce-EEEEecCCCC---CCCccccCCCcee--eEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcCC
Q 009791 361 WSSCGDER-IIVFTTNHKE---RLDPALLRPGRMD--MHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTINI 434 (525)
Q Consensus 361 ~s~~~~~~-ivI~TTN~~~---~LDpaLlRpGRfd--~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~~ 434 (525)
... ... +|+.|++.++ .+++++.+ ||. ..++++.|+.+++.+++..++...+ .....+.++.++..++-
T Consensus 134 ~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 134 AEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp HHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTT
T ss_pred HHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccC
Confidence 221 113 4444444444 45688888 775 8999999999999999998875331 11223344445544444
Q ss_pred CHHHHHH
Q 009791 435 TPAQVAE 441 (525)
Q Consensus 435 tpadi~~ 441 (525)
++.++.+
T Consensus 209 ~~r~l~~ 215 (242)
T 3bos_A 209 DLRTLFD 215 (242)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4444443
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.58 E-value=5.8e-14 Score=159.07 Aligned_cols=159 Identities=19% Similarity=0.257 Sum_probs=113.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceE
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVF 273 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~ 273 (525)
..|..|+.++|.++..+.+++.+. ...+.++||+||||||||++++++|+.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 456789999999888777766542 2356789999999999999999999987 67788
Q ss_pred EEecCCcCC--------hhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCC
Q 009791 274 DLQLGNVTR--------DSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGK 343 (525)
Q Consensus 274 ~l~~~~l~~--------~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
.++++.+.. +..++.++.... .++||||||||.+++. +.. .
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~--~~~---------------------------~ 297 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGA--GAA---------------------------S 297 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTS--CCS---------------------------S
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhc--CCC---------------------------C
Confidence 888776532 356777777665 4899999999998641 100 0
Q ss_pred chhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 344 GQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 344 ~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
.......+.|...++ . .++.+|++||.++ .+||+|.| ||+ .|.|+.|+.+++.++++.++.
T Consensus 298 ~~~~~~~~~L~~~l~----~--~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 298 GGQVDAANLIKPLLS----S--GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp SCHHHHHHHHSSCSS----S--CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHh----C--CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 011222223333333 2 3477888888653 57899999 998 699999999999999987653
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.57 E-value=1.3e-13 Score=141.43 Aligned_cols=191 Identities=19% Similarity=0.207 Sum_probs=130.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD 283 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~ 283 (525)
-.|.+|+.++|.+..++.+...+..-. ..|. .+..++|+||||||||||+++||+.++.++...+.......
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAK-------MRGE-VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHTC-CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHH-------hcCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 467799999998776665544332111 1122 33579999999999999999999999998877766655566
Q ss_pred hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCC--
Q 009791 284 SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLW-- 361 (525)
Q Consensus 284 ~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~-- 361 (525)
.++..++.....+.|++|||+|.+.. .....|+..+....
T Consensus 91 ~~l~~~~~~~~~~~v~~iDE~~~l~~--------------------------------------~~~e~L~~~~~~~~~~ 132 (334)
T 1in4_A 91 GDMAAILTSLERGDVLFIDEIHRLNK--------------------------------------AVEELLYSAIEDFQID 132 (334)
T ss_dssp HHHHHHHHHCCTTCEEEEETGGGCCH--------------------------------------HHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHccCCCEEEEcchhhcCH--------------------------------------HHHHHHHHHHHhcccc
Confidence 67777766666788999999998742 00111111111100
Q ss_pred ----CC--------CCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHH
Q 009791 362 ----SS--------CGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLL 429 (525)
Q Consensus 362 ----s~--------~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~ 429 (525)
.. .-..+.++.+||++..|++++++ ||...+.+++++.+++.++++......+.. ...+.+..++
T Consensus 133 i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~-~~~~~~~~ia 209 (334)
T 1in4_A 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVE-IEDAAAEMIA 209 (334)
T ss_dssp C---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHH
T ss_pred eeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHH
Confidence 00 00235667799999999999999 999899999999999999998876433212 2234566677
Q ss_pred hhcCCCHHHHHHHH
Q 009791 430 KTINITPAQVAEQF 443 (525)
Q Consensus 430 ~~~~~tpadi~~~l 443 (525)
....-+|..+..+|
T Consensus 210 ~~~~G~~R~a~~ll 223 (334)
T 1in4_A 210 KRSRGTPRIAIRLT 223 (334)
T ss_dssp HTSTTCHHHHHHHH
T ss_pred HhcCCChHHHHHHH
Confidence 76677777665554
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.57 E-value=1.1e-14 Score=150.20 Aligned_cols=161 Identities=17% Similarity=0.116 Sum_probs=115.3
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---------CCceEEEec
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---------KFDVFDLQL 277 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---------~~~i~~l~~ 277 (525)
..+++++|.++..+.|.+.+...+. ...+++++|+||||||||++++++++.+ +..++.+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3458899999888888776543221 1345689999999999999999999998 888999998
Q ss_pred CCcCCh----------------------hH-HHHHHHH---hCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhh
Q 009791 278 GNVTRD----------------------SD-LRTLLLS---TGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAA 331 (525)
Q Consensus 278 ~~l~~~----------------------~~-L~~l~~~---~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (525)
....+. .. +..++.. ...++||+|||+|.+...
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~--------------------- 145 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR--------------------- 145 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS---------------------
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc---------------------
Confidence 764321 12 2222222 234789999999987420
Q ss_pred hhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCC---CCCCccccCCCceee-EEEcCCCCHHHHHHH
Q 009791 332 VRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHK---ERLDPALLRPGRMDM-HIHMSYCGPYGFRLL 407 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~---~~LDpaLlRpGRfd~-~I~~~~p~~~~r~~L 407 (525)
......+..+++.++.... +..+++|+|||.+ +.+++++.+ ||.. .|+|+.++.++...+
T Consensus 146 ------------~~~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~i 209 (387)
T 2v1u_A 146 ------------PGGQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDI 209 (387)
T ss_dssp ------------TTHHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHH
T ss_pred ------------CCCChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHH
Confidence 0023456667776654421 2357889999988 789999998 8875 899999999999999
Q ss_pred HHHHhC
Q 009791 408 AANYLG 413 (525)
Q Consensus 408 ~~~~l~ 413 (525)
+...+.
T Consensus 210 l~~~~~ 215 (387)
T 2v1u_A 210 LETRAE 215 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 57
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.57 E-value=2.3e-15 Score=138.96 Aligned_cols=146 Identities=20% Similarity=0.254 Sum_probs=100.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceE
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVF 273 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~ 273 (525)
..|.+|++++|.++..+.+.+.+. ...++++||+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HhccccchhhcchHHHHHHHHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 346789999999887777666542 1335689999999999999999999998 78888
Q ss_pred EEecCCcCC--------hhHHHHHHHH---hCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCC
Q 009791 274 DLQLGNVTR--------DSDLRTLLLS---TGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGG 342 (525)
Q Consensus 274 ~l~~~~l~~--------~~~L~~l~~~---~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
.+++..+.. ...+..++.. ...+.||+|||+|.+.. .+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~--~~~~~~------------------------- 135 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVG--AGAVAE------------------------- 135 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSS--SSSSCT-------------------------
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcc--cccccc-------------------------
Confidence 888765421 1234444433 34689999999999853 111000
Q ss_pred CchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCC
Q 009791 343 KGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCG 400 (525)
Q Consensus 343 ~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~ 400 (525)
......+.|+..++. ..+++|+|||.++ .+|++|++ ||+. |+++.|+
T Consensus 136 --~~~~~~~~l~~~~~~------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 136 --GALDAGNILKPMLAR------GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp --TSCCTHHHHHHHHHT------TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred --cchHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 001123334444443 3467888999775 68999999 9995 9999885
No 58
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.57 E-value=1.3e-14 Score=147.71 Aligned_cols=189 Identities=15% Similarity=0.220 Sum_probs=119.2
Q ss_pred ccCCCCccccc-cChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 203 LEHPATFDTLA-MEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 203 ~~~~~~f~~l~-g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
+.+..+|++++ |.... . ....+..+...+ + ...++++||||||||||+|++++|+++ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~~-~-a~~~~~~~~~~~------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNR-L-AYEVVKEALENL------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTTH-H-HHHHHHHHHHTT------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcHH-H-HHHHHHHHHhCc------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 34556899987 43332 1 122233333321 1 235689999999999999999999999 8999999887
Q ss_pred CcCCh-------hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHH
Q 009791 279 NVTRD-------SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLS 351 (525)
Q Consensus 279 ~l~~~-------~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 351 (525)
.+... ..+........++.||||||||.+.. . ..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~---------------------------------~---~~~~~ 118 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG---------------------------------K---ERTQI 118 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT---------------------------------C---HHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC---------------------------------C---hHHHH
Confidence 65211 00111122224589999999998742 0 01223
Q ss_pred HHhhhhcCCCCCCCCceEEEEecCCCC---CCCccccCCCcee--eEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHH
Q 009791 352 GLLNFIDGLWSSCGDERIIVFTTNHKE---RLDPALLRPGRMD--MHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIE 426 (525)
Q Consensus 352 ~LLn~idgl~s~~~~~~ivI~TTN~~~---~LDpaLlRpGRfd--~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~ 426 (525)
.|++.++..... +.++|+.++|.+. .++++|.+ ||+ ..++++. +.+++..++..++...+ .....+.++
T Consensus 119 ~l~~~l~~~~~~--~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~-~~l~~~~l~ 192 (324)
T 1l8q_A 119 EFFHIFNTLYLL--EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFN-LELRKEVID 192 (324)
T ss_dssp HHHHHHHHHHHT--TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTT-CCCCHHHHH
T ss_pred HHHHHHHHHHHC--CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 344444433222 2356666777766 68999998 886 7899999 99999999998875432 122234455
Q ss_pred HHHhhcCCCHHHHHHHH
Q 009791 427 TLLKTINITPAQVAEQF 443 (525)
Q Consensus 427 ~l~~~~~~tpadi~~~l 443 (525)
.++... -...++.+.+
T Consensus 193 ~l~~~~-g~~r~l~~~l 208 (324)
T 1l8q_A 193 YLLENT-KNVREIEGKI 208 (324)
T ss_dssp HHHHHC-SSHHHHHHHH
T ss_pred HHHHhC-CCHHHHHHHH
Confidence 666666 5566655443
No 59
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.57 E-value=5.7e-14 Score=146.03 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=111.8
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHH-----------------HhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYK-----------------RVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~-----------------~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
.|+|.++.|+.|...+........... .-....+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999887754333221100 011234568999999999999999999999999999
Q ss_pred EEecCCcCC--------hhHHHHHHHHhC------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhcccccc
Q 009791 274 DLQLGNVTR--------DSDLRTLLLSTG------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDF 339 (525)
Q Consensus 274 ~l~~~~l~~--------~~~L~~l~~~~~------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (525)
.+++..+.. ...+..++.... .++||||||||.+.. .+.+...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~--~~~~~~~--------------------- 158 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR--LSENRSI--------------------- 158 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------------------------
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh--hcCCCce---------------------
Confidence 999987631 233555554432 679999999998853 1111100
Q ss_pred CCCCchhHHHHHHHhhhhcCCCC----C-------------CCCceEEEEecCC--------------------------
Q 009791 340 AGGKGQHMLTLSGLLNFIDGLWS----S-------------CGDERIIVFTTNH-------------------------- 376 (525)
Q Consensus 340 ~~~~~~~~~~ls~LLn~idgl~s----~-------------~~~~~ivI~TTN~-------------------------- 376 (525)
..+.......+.|+..|++... . ...++++|+|||.
T Consensus 159 -~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~ 237 (376)
T 1um8_A 159 -TRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK 237 (376)
T ss_dssp ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT
T ss_pred -ecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhcc
Confidence 0011123467888888886410 0 0123577777762
Q ss_pred ---------------CCCCCccccCCCceeeEEEcCCCCHHHHHHHHHH
Q 009791 377 ---------------KERLDPALLRPGRMDMHIHMSYCGPYGFRLLAAN 410 (525)
Q Consensus 377 ---------------~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~ 410 (525)
...+.|+|+. ||+..|.|+.++.++...|+..
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 238 EQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp TTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred chhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 0124566666 8888899999999888888764
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=4.5e-14 Score=146.17 Aligned_cols=151 Identities=16% Similarity=0.233 Sum_probs=111.8
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----------CCceEEEecC
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----------KFDVFDLQLG 278 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----------~~~i~~l~~~ 278 (525)
++++|.++..+.|.+.+...... ..+++++|+||||||||++++++++++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999888877655432 235689999999999999999999998 8999999876
Q ss_pred CcC-Ch-----------------------hH-HHHHHHHhC-CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhh
Q 009791 279 NVT-RD-----------------------SD-LRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAV 332 (525)
Q Consensus 279 ~l~-~~-----------------------~~-L~~l~~~~~-~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (525)
... +. .. +..++.... .+.||+|||+|.+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~---------------------- 148 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKR---------------------- 148 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHS----------------------
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccC----------------------
Confidence 543 21 12 222222233 2349999999987420
Q ss_pred hccccccCCCCchhHHH-HHHHhhhhcCCCCCCCCceEEEEecCCC---CCCCccccCCCceeeEEEcCCCCHHHHHHHH
Q 009791 333 RKNKTDFAGGKGQHMLT-LSGLLNFIDGLWSSCGDERIIVFTTNHK---ERLDPALLRPGRMDMHIHMSYCGPYGFRLLA 408 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~~~-ls~LLn~idgl~s~~~~~~ivI~TTN~~---~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~ 408 (525)
..... +..|+... ..+.+|+|||.+ +.+++++.+ ||+..|+|+.++.++..+++
T Consensus 149 ------------~~~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il 206 (384)
T 2qby_B 149 ------------RGGDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFIL 206 (384)
T ss_dssp ------------TTSHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHH
T ss_pred ------------CCCceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHH
Confidence 00123 45555443 347889999987 789999988 88789999999999999999
Q ss_pred HHHhC
Q 009791 409 ANYLG 413 (525)
Q Consensus 409 ~~~l~ 413 (525)
..++.
T Consensus 207 ~~~~~ 211 (384)
T 2qby_B 207 SKYAE 211 (384)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.54 E-value=9.9e-14 Score=141.87 Aligned_cols=154 Identities=23% Similarity=0.261 Sum_probs=100.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-------c-----
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF-------D----- 271 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~-------~----- 271 (525)
..|.+|++++|.++.++.+...+ + . +...++|||||||||||++++++|+.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~---~-~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA---V-D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH---H-C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHh---h-C---------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 45678999999988766532211 1 1 12346999999999999999999999863 1
Q ss_pred ---------------------eEEEecCCcCChhH------HHHHHHHh-----------CCCeEEEEeccccccCCCCC
Q 009791 272 ---------------------VFDLQLGNVTRDSD------LRTLLLST-----------GNRSILVIEDIDCSVDLPDR 313 (525)
Q Consensus 272 ---------------------i~~l~~~~l~~~~~------L~~l~~~~-----------~~~sIL~iDdID~~~~~~~r 313 (525)
++.+..+. +... +...+... ..++||||||||.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccchhhhhccccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 22111111 1111 12222221 1378999999997731
Q ss_pred CCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC---CCCC------CCceEEEEecCCCC-CCCcc
Q 009791 314 RNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL---WSSC------GDERIIVFTTNHKE-RLDPA 383 (525)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl---~s~~------~~~~ivI~TTN~~~-~LDpa 383 (525)
...+.|+..++.- .... +..+++|+|||..+ .++++
T Consensus 159 ----------------------------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~ 204 (350)
T 1g8p_A 159 ----------------------------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQ 204 (350)
T ss_dssp ----------------------------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHH
T ss_pred ----------------------------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHH
Confidence 2344566555531 1111 12578899999755 89999
Q ss_pred ccCCCceeeEEEcCCC-CHHHHHHHHHHHh
Q 009791 384 LLRPGRMDMHIHMSYC-GPYGFRLLAANYL 412 (525)
Q Consensus 384 LlRpGRfd~~I~~~~p-~~~~r~~L~~~~l 412 (525)
|++ ||+.++++++| +.+.+..|+...+
T Consensus 205 L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 205 LLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp HHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred HHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 999 99999999999 6777778887754
No 62
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.53 E-value=3.6e-14 Score=150.97 Aligned_cols=188 Identities=16% Similarity=0.250 Sum_probs=117.0
Q ss_pred ccCCCCccccc-cChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEe
Q 009791 203 LEHPATFDTLA-MEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQ 276 (525)
Q Consensus 203 ~~~~~~f~~l~-g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~ 276 (525)
+.+..+|++++ |..... ....+..+...+ +. ..+++||||||||||+|+++||+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 34445899987 544332 223333333221 22 5689999999999999999999998 88899998
Q ss_pred cCCcCChhHHH---------HHHHHhC-CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchh
Q 009791 277 LGNVTRDSDLR---------TLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQH 346 (525)
Q Consensus 277 ~~~l~~~~~L~---------~l~~~~~-~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
+..+. ..+. .+..... ++.||||||||.+.+ .
T Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------------------------------~--- 209 (440)
T 2z4s_A 168 SEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------------------------------K--- 209 (440)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------------------------------C---
T ss_pred HHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------------------------------C---
Confidence 77652 1111 2222334 789999999998742 0
Q ss_pred HHHHHHHhhhhcCCCCCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEcCCCCHHHHHHHHHHHhCCcCCCccc
Q 009791 347 MLTLSGLLNFIDGLWSSCGDERIIVFTTNHKER---LDPALLRPGRMD--MHIHMSYCGPYGFRLLAANYLGITDCEHKL 421 (525)
Q Consensus 347 ~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~---LDpaLlRpGRfd--~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~ 421 (525)
..+...|+..++.+... +..+||.|.+.+.. ++++|++ ||. ..+.++.|+.+++..++...+...+. ...
T Consensus 210 ~~~q~~l~~~l~~l~~~--~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-~i~ 284 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHG-ELP 284 (440)
T ss_dssp HHHHHHHHHHHHHHHTT--TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-CCC
T ss_pred hHHHHHHHHHHHHHHHC--CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC
Confidence 01223344444433222 22455555555554 8899999 886 78999999999999999987753210 111
Q ss_pred HHHHHHHHhhcCCCHHHHHHHH
Q 009791 422 VAEIETLLKTINITPAQVAEQF 443 (525)
Q Consensus 422 ~~~i~~l~~~~~~tpadi~~~l 443 (525)
.+.++.++...+-+++++.+.+
T Consensus 285 ~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 285 EEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp TTHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHH
Confidence 2224445555555666655443
No 63
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=1e-13 Score=142.21 Aligned_cols=181 Identities=11% Similarity=0.130 Sum_probs=116.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-CC-----------
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-KF----------- 270 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-~~----------- 270 (525)
...|.+|++++|.++.++.+.+.+. . .| ..+. +||+||||||||++++++|+++ +.
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD---Q-------PR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT---C-------TT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh---h-------CC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 3688999999999887776655431 1 12 2233 9999999999999999999965 21
Q ss_pred -----------------ceEEEecCCcCChh--HHHHHHHHh----------------CCCeEEEEeccccccCCCCCCC
Q 009791 271 -----------------DVFDLQLGNVTRDS--DLRTLLLST----------------GNRSILVIEDIDCSVDLPDRRN 315 (525)
Q Consensus 271 -----------------~i~~l~~~~l~~~~--~L~~l~~~~----------------~~~sIL~iDdID~~~~~~~r~~ 315 (525)
+++.++........ .+++.+... .++.||+|||+|.+ +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-~------ 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-T------ 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-C------
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-C------
Confidence 12333332221111 345544432 25669999999974 2
Q ss_pred CCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEE
Q 009791 316 GNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIH 395 (525)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~ 395 (525)
....+.|+..++... .+..+|++||.++.++|++.+ |+ ..++
T Consensus 148 -------------------------------~~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~ 189 (354)
T 1sxj_E 148 -------------------------------KDAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIR 189 (354)
T ss_dssp -------------------------------HHHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEE
T ss_pred -------------------------------HHHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEe
Confidence 123455666666542 347888999999999999998 77 7899
Q ss_pred cCCCCHHHHHHHHHHHhCCcCCCccc-HHHHHHHHhhcCCCHHHHHH
Q 009791 396 MSYCGPYGFRLLAANYLGITDCEHKL-VAEIETLLKTINITPAQVAE 441 (525)
Q Consensus 396 ~~~p~~~~r~~L~~~~l~~~~~~~~~-~~~i~~l~~~~~~tpadi~~ 441 (525)
|+.|+.++...++...+...+. ... .+.++.++..++-++.++..
T Consensus 190 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 190 CPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999998877643321 111 23344444444444444433
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=6e-14 Score=158.99 Aligned_cols=155 Identities=14% Similarity=0.231 Sum_probs=112.8
Q ss_pred cccccChHHHHHHHHHHHHHHHhHHHHHHhCCC---Cc-ceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCC
Q 009791 210 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA---WK-RGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTR 282 (525)
Q Consensus 210 ~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~---~~-rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~ 282 (525)
+.++|.++.++.|.+.+.... .|.. .+ .++||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 457888888888877775432 1222 12 269999999999999999999998 78999999998753
Q ss_pred h-----hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhh
Q 009791 283 D-----SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFI 357 (525)
Q Consensus 283 ~-----~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~i 357 (525)
. ..+...+. ....+||||||||.+- ...++.|+..|
T Consensus 563 ~~~~~~~~l~~~~~-~~~~~vl~lDEi~~~~--------------------------------------~~~~~~Ll~~l 603 (758)
T 3pxi_A 563 KHSTSGGQLTEKVR-RKPYSVVLLDAIEKAH--------------------------------------PDVFNILLQVL 603 (758)
T ss_dssp SCCCC---CHHHHH-HCSSSEEEEECGGGSC--------------------------------------HHHHHHHHHHH
T ss_pred ccccccchhhHHHH-hCCCeEEEEeCccccC--------------------------------------HHHHHHHHHHh
Confidence 2 23333332 2467899999999762 24667788888
Q ss_pred cCCCCC-------CCCceEEEEecCCCCC------------CCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 358 DGLWSS-------CGDERIIVFTTNHKER------------LDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 358 dgl~s~-------~~~~~ivI~TTN~~~~------------LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
|.-.-. ...+++||+|||.+.. ++|+|+. |||..|.|+.|+.+++..|+..++.
T Consensus 604 e~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 604 EDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp HHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred ccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 752211 1134689999997644 7889988 9999999999999999999998874
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=4.2e-14 Score=162.26 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=106.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceE
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVF 273 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~ 273 (525)
..|..|+.++|.++..+.+++.+. ...++++||+||||||||++++++|+.+ +.+++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 356789999999887777766542 1345689999999999999999999998 88999
Q ss_pred EEecCCcCC--------hhHHHHHHHHh---CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCC
Q 009791 274 DLQLGNVTR--------DSDLRTLLLST---GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGG 342 (525)
Q Consensus 274 ~l~~~~l~~--------~~~L~~l~~~~---~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
.++++.+.. ...++.++..+ ..++||||||||.+.+.... .
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~--~-------------------------- 282 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA--E-------------------------- 282 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------------------
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc--c--------------------------
Confidence 999888742 23466666655 36899999999998641100 0
Q ss_pred CchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCC----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 343 KGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 343 ~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
......+.|...++. .++.+|++||.++ .+|++|.| ||+. |+|+.|+.+++.+|++.++.
T Consensus 283 --g~~~~~~~L~~~l~~------~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 283 --GAVDAGNMLKPALAR------GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp -----------HHHHHT------TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHhC------CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 001122223333332 3467888888775 48999999 9986 99999999999999986653
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.50 E-value=1.5e-13 Score=155.68 Aligned_cols=154 Identities=16% Similarity=0.270 Sum_probs=113.5
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCC----CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCCh---
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA----WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRD--- 283 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~--- 283 (525)
.++|.++.++.|...+.. .+.|.. +...+||+||||||||++|+++|+.++.+++.++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 467777777776665532 223432 22369999999999999999999999999999999876421
Q ss_pred ----------------hHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhH
Q 009791 284 ----------------SDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHM 347 (525)
Q Consensus 284 ----------------~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (525)
..+...+.. ...+||||||||.+- .
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~--------------------------------------~ 571 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH--------------------------------------P 571 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC--------------------------------------H
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC--------------------------------------H
Confidence 123333333 457999999999762 2
Q ss_pred HHHHHHhhhhcCCCCC--CC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEE
Q 009791 348 LTLSGLLNFIDGLWSS--CG-----DERIIVFTTNHKE-------------------------RLDPALLRPGRMDMHIH 395 (525)
Q Consensus 348 ~~ls~LLn~idgl~s~--~~-----~~~ivI~TTN~~~-------------------------~LDpaLlRpGRfd~~I~ 395 (525)
..++.|+..||.-.-. .| .+++||+|||... .++|+|+. |||..|.
T Consensus 572 ~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~ 649 (758)
T 1r6b_X 572 DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIW 649 (758)
T ss_dssp HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEE
T ss_pred HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCccee
Confidence 3677788888742110 01 2478999999753 67899998 9999999
Q ss_pred cCCCCHHHHHHHHHHHhC
Q 009791 396 MSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 396 ~~~p~~~~r~~L~~~~l~ 413 (525)
|+.++.+++..|+..++.
T Consensus 650 ~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 650 FDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999999998874
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.49 E-value=1.6e-13 Score=147.00 Aligned_cols=147 Identities=20% Similarity=0.215 Sum_probs=106.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceE
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVF 273 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~ 273 (525)
..|..|+.|+|.++..+.+++.+. ...+.++||+||||||||++++++|+.+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 456789999999988887776553 1335689999999999999999999997 78899
Q ss_pred EEecCCcC---ChhHHHHHHHHhC--CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHH
Q 009791 274 DLQLGNVT---RDSDLRTLLLSTG--NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHML 348 (525)
Q Consensus 274 ~l~~~~l~---~~~~L~~l~~~~~--~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (525)
.++++.-. ....++.+|.... .++||||| .. ..
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~-------------------------------------~~ 278 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------------------------------ID 278 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------------------
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc-------------------------------------hh
Confidence 88887221 2245677776553 68999999 10 00
Q ss_pred HHHHHhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 349 TLSGLLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 349 ~ls~LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
..+.|+..++. ..+.+|++||.++ .+|++|.| ||.. |.|+.|+.+++..|++.++..
T Consensus 279 a~~~L~~~L~~------g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 279 ASNILKPSLAR------GELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp -----CCCTTS------SSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHhhcC------CCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 22334444432 3578999999887 69999999 9985 999999999999999988765
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=4.9e-13 Score=137.05 Aligned_cols=158 Identities=22% Similarity=0.321 Sum_probs=112.8
Q ss_pred CcceeccccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC-----
Q 009791 196 IRWDSVKLEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF----- 270 (525)
Q Consensus 196 ~~w~~v~~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~----- 270 (525)
..|.. ...|.+|++++|.+..++.|...+. . |. .+ .+|||||||||||++++++|+.+..
T Consensus 13 ~~~~~--k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 13 LPWVE--KYRPETLDEVYGQNEVITTVRKFVD----E-------GK-LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHH----T-------TC-CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred CchHH--HhCCCcHHHhcCcHHHHHHHHHHHh----c-------CC-Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 34654 3688999999998877776655443 1 22 22 2999999999999999999999742
Q ss_pred ceEEEecCCcCChhHHHHHHHH---h-----CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCC
Q 009791 271 DVFDLQLGNVTRDSDLRTLLLS---T-----GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGG 342 (525)
Q Consensus 271 ~i~~l~~~~l~~~~~L~~l~~~---~-----~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
.+..++.++......+++.+.. . ..+.|++|||+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~---------------------------------- 123 (340)
T 1sxj_C 78 MVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT---------------------------------- 123 (340)
T ss_dssp HEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC----------------------------------
T ss_pred eEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC----------------------------------
Confidence 4666776654444455544432 1 236899999999763
Q ss_pred CchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 343 KGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 343 ~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
....+.|+..++... ....+|++||.+..+.|++++ |+. .+.++.++.++....+...+.
T Consensus 124 ----~~~~~~L~~~le~~~----~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 124 ----NAAQNALRRVIERYT----KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp ----HHHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCC----CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHH
Confidence 123455777776542 336677889999999999998 775 689999999888888877663
No 69
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.2e-13 Score=140.47 Aligned_cols=129 Identities=11% Similarity=0.154 Sum_probs=96.2
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceEEEecCCcCC----------------------hhHHHHH
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVFDLQLGNVTR----------------------DSDLRTL 289 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~~l~~~~l~~----------------------~~~L~~l 289 (525)
..+.+++||||||||||++++++++++ ++.++.++|..+.+ ...|.+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 456789999999999999999999999 46778888876532 2346666
Q ss_pred HHHh----CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCC
Q 009791 290 LLST----GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCG 365 (525)
Q Consensus 290 ~~~~----~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~ 365 (525)
|... ..++||+|||||.+.. +..+..|+++..- ..
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~-------------------------------------q~~L~~l~~~~~~----~~ 161 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLS-------------------------------------EKILQYFEKWISS----KN 161 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCC-------------------------------------THHHHHHHHHHHC----SS
T ss_pred HHHhhhccCCceEEEEecHHHhhc-------------------------------------chHHHHHHhcccc----cC
Confidence 6653 4578999999998841 2245556654332 12
Q ss_pred CceEEEEecCCCCC----CCccccCCCcee-eEEEcCCCCHHHHHHHHHHHhC
Q 009791 366 DERIIVFTTNHKER----LDPALLRPGRMD-MHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 366 ~~~ivI~TTN~~~~----LDpaLlRpGRfd-~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
..++||+++|..+. |++++.+ ||. ..|+|+.++.++...|++..+.
T Consensus 162 s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 162 SKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 35889999998864 4566666 886 6899999999999999988764
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=4.3e-13 Score=138.69 Aligned_cols=159 Identities=15% Similarity=0.037 Sum_probs=114.3
Q ss_pred CccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecCCcCCh
Q 009791 208 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLGNVTRD 283 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~~l~~~ 283 (525)
.++.++|.++..+.|.+.+...+... .+..+.++|+||||||||++++++++.+ +..++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 44889999999988888776554321 1112379999999999999999999999 678888987664321
Q ss_pred h----------------------H----HHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhcccc
Q 009791 284 S----------------------D----LRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKT 337 (525)
Q Consensus 284 ~----------------------~----L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (525)
. . +...+.....|.||+|||+|.+ +
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~---------------------------- 138 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-A---------------------------- 138 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-C----------------------------
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-c----------------------------
Confidence 1 1 1222223356889999999976 1
Q ss_pred ccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCC---CCCCccccCCCceee-EEEcCCCCHHHHHHHHHHHhC
Q 009791 338 DFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHK---ERLDPALLRPGRMDM-HIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 338 ~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~---~~LDpaLlRpGRfd~-~I~~~~p~~~~r~~L~~~~l~ 413 (525)
...+..|+..++.........+.||++||.+ +.+++.+.+ ||.. .|+|+.++.++..+++...+.
T Consensus 139 ---------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 139 ---------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp ---------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 2345666666654321000247888999988 778888887 8875 899999999999999988764
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=9.7e-14 Score=142.95 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=113.1
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc------CCceEEEecCC
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL------KFDVFDLQLGN 279 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l------~~~i~~l~~~~ 279 (525)
...++.++|.++..+.|.+.+...+. ...++.++|+||||||||+|++++++.+ +..++.+++..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34558899998888877776543222 1335689999999999999999999998 88899988653
Q ss_pred cCC----------------------hhH-HH---HHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhh
Q 009791 280 VTR----------------------DSD-LR---TLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVR 333 (525)
Q Consensus 280 l~~----------------------~~~-L~---~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (525)
..+ ... +. ..+.....|+||+|||+|.+...
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~----------------------- 143 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK----------------------- 143 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHS-----------------------
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhcc-----------------------
Confidence 211 122 22 22222234899999999987530
Q ss_pred ccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCC---CCCCccccCCCcee-eEEEcCCCCHHHHHHHHH
Q 009791 334 KNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHK---ERLDPALLRPGRMD-MHIHMSYCGPYGFRLLAA 409 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~---~~LDpaLlRpGRfd-~~I~~~~p~~~~r~~L~~ 409 (525)
.....+..|+..++.+ .+..+.+|++||.+ +.+++.+.+ ||. ..|+++.++.++..+++.
T Consensus 144 -----------~~~~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~ 207 (386)
T 2qby_A 144 -----------YNDDILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILT 207 (386)
T ss_dssp -----------SCSTHHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHH
T ss_pred -----------CcCHHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHH
Confidence 0023566777777654 12457888999877 578888887 665 489999999999999998
Q ss_pred HHhC
Q 009791 410 NYLG 413 (525)
Q Consensus 410 ~~l~ 413 (525)
.++.
T Consensus 208 ~~~~ 211 (386)
T 2qby_A 208 KRAQ 211 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8664
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.45 E-value=6.3e-13 Score=150.61 Aligned_cols=147 Identities=20% Similarity=0.225 Sum_probs=107.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----------CCceE
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----------KFDVF 273 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----------~~~i~ 273 (525)
..|..|+.++|.++..+.+.+.+. ...+.++|||||||||||++|+++|+.+ +..++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~-------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHh-------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 456789999999998888876553 2345689999999999999999999997 88888
Q ss_pred EEecCCc---CChhHHHHHHHHh--CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHH
Q 009791 274 DLQLGNV---TRDSDLRTLLLST--GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHML 348 (525)
Q Consensus 274 ~l~~~~l---~~~~~L~~l~~~~--~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (525)
.++++.- ..+..++.+|..+ ..++||||| .. ..
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-------------------------------------~~ 278 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------------------------------ID 278 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------------------
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-------------------------------------hh
Confidence 8887221 1234677777655 468999999 10 01
Q ss_pred HHHHHhhhhcCCCCCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCC
Q 009791 349 TLSGLLNFIDGLWSSCGDERIIVFTTNHKE-----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGI 414 (525)
Q Consensus 349 ~ls~LLn~idgl~s~~~~~~ivI~TTN~~~-----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~ 414 (525)
..+.|+..++. .++.+|+|||..+ .+||+|.| ||. .|+|+.|+.+++.+|++.++..
T Consensus 279 ~~~~L~~~l~~------~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 279 ASNILKPSLAR------GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp -----CCCTTS------SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhc------CCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 22334444441 3588999999888 79999999 995 5999999999999999987765
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.45 E-value=2.7e-13 Score=133.78 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=98.2
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC---CceEEEecCCcCCh
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK---FDVFDLQLGNVTRD 283 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~~~~l~~~ 283 (525)
.+|++++|.....+.+.+.+..... .+.++||+||||||||++|+++++.+. .+++.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~- 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE- 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-
Confidence 4789999998888888877764432 346899999999999999999999885 6899999998742
Q ss_pred hHHHH-HH-----------------HHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCch
Q 009791 284 SDLRT-LL-----------------LSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQ 345 (525)
Q Consensus 284 ~~L~~-l~-----------------~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (525)
..+.. +| ......++|||||||.+..
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~------------------------------------ 114 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------------------------ 114 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH------------------------------------
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH------------------------------------
Confidence 22222 11 1113468999999998731
Q ss_pred hHHHHHHHhhhhcCCC-C------CCCCceEEEEecCCC-------CCCCccccCCCcee-eEEEcCCCCH--HHHHHHH
Q 009791 346 HMLTLSGLLNFIDGLW-S------SCGDERIIVFTTNHK-------ERLDPALLRPGRMD-MHIHMSYCGP--YGFRLLA 408 (525)
Q Consensus 346 ~~~~ls~LLn~idgl~-s------~~~~~~ivI~TTN~~-------~~LDpaLlRpGRfd-~~I~~~~p~~--~~r~~L~ 408 (525)
.....|+..++... . .....+.||+|||.. ..++++|.. ||+ ..|++|..+. +....++
T Consensus 115 --~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~ 190 (265)
T 2bjv_A 115 --MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMA 190 (265)
T ss_dssp --HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHH
Confidence 23344555555311 0 001236788899874 257889988 886 4566665543 4556666
Q ss_pred HHHh
Q 009791 409 ANYL 412 (525)
Q Consensus 409 ~~~l 412 (525)
..++
T Consensus 191 ~~~l 194 (265)
T 2bjv_A 191 EYFA 194 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6555
No 74
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.42 E-value=6.1e-12 Score=128.84 Aligned_cols=150 Identities=16% Similarity=0.151 Sum_probs=109.4
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCC------------------------ceEEEecC---CcCChhHHHHHHHHhC
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKF------------------------DVFDLQLG---NVTRDSDLRTLLLSTG 294 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~------------------------~i~~l~~~---~l~~~~~L~~l~~~~~ 294 (525)
..+.+||||||||||||++++++|+.+.. +++.++.. .-.+...++.++....
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 34668999999999999999999998853 45666653 2234456777776543
Q ss_pred ------CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCce
Q 009791 295 ------NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDER 368 (525)
Q Consensus 295 ------~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ 368 (525)
.+.|++|||+|.+. ....+.||..++.. +...
T Consensus 102 ~~~~~~~~kvviIdead~l~--------------------------------------~~a~naLLk~lEep----~~~~ 139 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLT--------------------------------------DAAANALLKTLEEP----PAET 139 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBC--------------------------------------HHHHHHHHHHHTSC----CTTE
T ss_pred hccccCCcEEEEECchhhcC--------------------------------------HHHHHHHHHHhcCC----CCCe
Confidence 36799999999873 12457788888863 3457
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcCCCHHHHHHH
Q 009791 369 IIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTINITPAQVAEQ 442 (525)
Q Consensus 369 ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~~tpadi~~~ 442 (525)
++|++||.++.++|++++ |+ ..++|+.|+.++...++....... .+.++.++..++-++..+.+.
T Consensus 140 ~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~~~~------~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 140 WFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREVTMS------QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHCCCC------HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhcCCC------HHHHHHHHHHcCCCHHHHHHH
Confidence 888999999999999998 76 469999999999988888765322 234455555556666655443
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.40 E-value=2.3e-12 Score=138.72 Aligned_cols=145 Identities=17% Similarity=0.120 Sum_probs=92.8
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC--ceEEEecCCcCChhHH--
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF--DVFDLQLGNVTRDSDL-- 286 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~--~i~~l~~~~l~~~~~L-- 286 (525)
.++|.++.++.+...+. .+.++||+||||||||+||+++|+.++. ++..+.+.. .+..++
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 46677777665544332 1358999999999999999999999853 444444432 111111
Q ss_pred ---------HHHHHHhC-----CCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHH
Q 009791 287 ---------RTLLLSTG-----NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSG 352 (525)
Q Consensus 287 ---------~~l~~~~~-----~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 352 (525)
...+.... .++|||||||+.+. ..+.+.
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------------------------------------~~~q~~ 128 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG--------------------------------------PAILNT 128 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC--------------------------------------HHHHHH
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc--------------------------------------HHHHHH
Confidence 11121111 35699999998652 235666
Q ss_pred HhhhhcC-------CCCCCCCceEEEEecCCCC---CCCccccCCCceeeEEEcCCCCH-HHHHHHHHHHh
Q 009791 353 LLNFIDG-------LWSSCGDERIIVFTTNHKE---RLDPALLRPGRMDMHIHMSYCGP-YGFRLLAANYL 412 (525)
Q Consensus 353 LLn~idg-------l~s~~~~~~ivI~TTN~~~---~LDpaLlRpGRfd~~I~~~~p~~-~~r~~L~~~~l 412 (525)
|+..|+. ..... ..+++|+|||... .+.+++++ ||+.+|++++|+. +++..|+....
T Consensus 129 LL~~lee~~v~i~G~~~~~-~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 129 LLTAINERQFRNGAHVEKI-PMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp HHHHHHSSEEECSSSEEEC-CCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHhccCCCCcCCc-chhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 7777752 21111 2246788888532 24459999 9999999999997 77888887655
No 76
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.38 E-value=5.9e-13 Score=119.73 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=64.6
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHHH
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDLR 287 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L~ 287 (525)
.++|.....+.+.+.+.... .....+||+||||||||++|+++++.. +.+++ ++|+.+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 45666677777777665432 234579999999999999999999987 77899 9999887666666
Q ss_pred HHHHHhCCCeEEEEeccccc
Q 009791 288 TLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 288 ~l~~~~~~~sIL~iDdID~~ 307 (525)
..+..+ ..++|||||||.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l 88 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHL 88 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGS
T ss_pred cHHHHc-CCcEEEEcChHHC
Confidence 666655 4589999999987
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.34 E-value=3.7e-12 Score=146.17 Aligned_cols=156 Identities=17% Similarity=0.288 Sum_probs=112.8
Q ss_pred ccccccChHHHHHHHHHHHHHHHhHHHHHHhCCC----CcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC
Q 009791 209 FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA----WKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT 281 (525)
Q Consensus 209 f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~ 281 (525)
++.|+|.+..++.|...+.... .|.. +...+||+||||||||++|++||+.+ +.+++.++|+.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 3567888888777777665332 2221 12479999999999999999999999 7899999998774
Q ss_pred Chh-------------------HHHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCC
Q 009791 282 RDS-------------------DLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGG 342 (525)
Q Consensus 282 ~~~-------------------~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
... .+...+.. ...+||||||||.+-
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~---------------------------------- 673 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAH---------------------------------- 673 (854)
T ss_dssp SSGGGGGC--------------CHHHHHHH-CSSEEEEESSGGGSC----------------------------------
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccC----------------------------------
Confidence 321 12222222 456899999999762
Q ss_pred CchhHHHHHHHhhhhcCCCCC--CC-----CceEEEEecCC--------------------------CCCCCccccCCCc
Q 009791 343 KGQHMLTLSGLLNFIDGLWSS--CG-----DERIIVFTTNH--------------------------KERLDPALLRPGR 389 (525)
Q Consensus 343 ~~~~~~~ls~LLn~idgl~s~--~~-----~~~ivI~TTN~--------------------------~~~LDpaLlRpGR 389 (525)
..+++.|+..||.-.-. .+ .+.+||+|||. ...+.|+|+. |
T Consensus 674 ----~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--R 747 (854)
T 1qvr_A 674 ----PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--R 747 (854)
T ss_dssp ----HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--T
T ss_pred ----HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--h
Confidence 24677788888743211 01 24789999997 2346778877 9
Q ss_pred eeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 390 MDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 390 fd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
||..+.+..|+.++...|+..++.
T Consensus 748 l~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 748 LDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp CSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred cCeEEeCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998874
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.28 E-value=1.1e-11 Score=125.27 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=97.8
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHHH
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDLR 287 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L~ 287 (525)
+++|.....+.+.+.+.... ..+.++||+||||||||++|++|++.. +.+++.++|+.+..+---.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 46777777777777665432 235689999999999999999999976 6789999999874321111
Q ss_pred HHHH-----------------HhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHH
Q 009791 288 TLLL-----------------STGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTL 350 (525)
Q Consensus 288 ~l~~-----------------~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (525)
.+|. .....++|||||||.+.. ...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~--------------------------------------~~q 113 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP--------------------------------------LMQ 113 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH--------------------------------------HHH
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH--------------------------------------HHH
Confidence 1111 112357999999998731 234
Q ss_pred HHHhhhhcCCC-C------CCCCceEEEEecCCC-------CCCCccccCCCcee-eEEEcCCCC--HHHHHHHHHHHhC
Q 009791 351 SGLLNFIDGLW-S------SCGDERIIVFTTNHK-------ERLDPALLRPGRMD-MHIHMSYCG--PYGFRLLAANYLG 413 (525)
Q Consensus 351 s~LLn~idgl~-s------~~~~~~ivI~TTN~~-------~~LDpaLlRpGRfd-~~I~~~~p~--~~~r~~L~~~~l~ 413 (525)
..|+..++... . .....+.||+|||.. ..+++.|.. ||. ..|++|... .+....|+..|+.
T Consensus 114 ~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 114 VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp HHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 45666665432 0 011246788899875 245677776 774 446666555 3555566666653
No 79
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=2.5e-11 Score=122.85 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=97.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc------CCceEEEecCC-cCChhHHHHHHHHhC------CCeEEEEeccccccCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL------KFDVFDLQLGN-VTRDSDLRTLLLSTG------NRSILVIEDIDCSVDL 310 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l------~~~i~~l~~~~-l~~~~~L~~l~~~~~------~~sIL~iDdID~~~~~ 310 (525)
...||||||||||||++++++|+.+ +.+++.++... -.+-..+++++..+. ..-|++|||+|.+-
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt-- 95 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-- 95 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC--
Confidence 4589999999999999999999864 46888888764 334556777776653 24699999999873
Q ss_pred CCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCce
Q 009791 311 PDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRM 390 (525)
Q Consensus 311 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRf 390 (525)
....+.||..|+.. +...++|++||++++|.|+++. |
T Consensus 96 ------------------------------------~~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R- 132 (305)
T 2gno_A 96 ------------------------------------QQAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R- 132 (305)
T ss_dssp ------------------------------------HHHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T-
T ss_pred ------------------------------------HHHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e-
Confidence 22467799988864 3457888888999999999999 7
Q ss_pred eeEEEcCCCCHHHHHHHHHHHhC
Q 009791 391 DMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 391 d~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
.++|+.|+.++....+...++
T Consensus 133 --~~~f~~l~~~~i~~~L~~~~~ 153 (305)
T 2gno_A 133 --VFRVVVNVPKEFRDLVKEKIG 153 (305)
T ss_dssp --SEEEECCCCHHHHHHHHHHHT
T ss_pred --eEeCCCCCHHHHHHHHHHHhC
Confidence 789999999998888877654
No 80
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.26 E-value=7.3e-12 Score=116.22 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=67.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecCCc
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLGNV 280 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~~l 280 (525)
.+.+|+++.......+.+.+.+..|.. .+..+.+++++|+||||||||+|++++|+.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVH------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHH------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHH------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 467899998865555566666665554 3344556889999999999999999999988 667777766544
Q ss_pred CCh-------hHHHHHHHHhCCCeEEEEeccccc
Q 009791 281 TRD-------SDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 281 ~~~-------~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
... .....++....++.+|+|||++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 210 001123344457899999999854
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.25 E-value=2.8e-12 Score=115.12 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=61.3
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHH
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLL 290 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~ 290 (525)
+++|.....+.+.+.+..+.. ....+||+||||||||++|+++++..+ +++.++|+.+... ....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 356777777778777765432 245799999999999999999999988 8999998876321 234444
Q ss_pred HHhCCCeEEEEeccccc
Q 009791 291 LSTGNRSILVIEDIDCS 307 (525)
Q Consensus 291 ~~~~~~sIL~iDdID~~ 307 (525)
.. ...++|||||||.+
T Consensus 72 ~~-a~~~~l~lDei~~l 87 (143)
T 3co5_A 72 QK-AEGGVLYVGDIAQY 87 (143)
T ss_dssp HH-TTTSEEEEEECTTC
T ss_pred Hh-CCCCeEEEeChHHC
Confidence 43 45789999999987
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=1e-12 Score=144.74 Aligned_cols=128 Identities=23% Similarity=0.272 Sum_probs=87.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEec----CCcCC---hhHH------H-HHHHHhCCCeEEEEeccccccCCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL----GNVTR---DSDL------R-TLLLSTGNRSILVIEDIDCSVDLP 311 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~----~~l~~---~~~L------~-~l~~~~~~~sIL~iDdID~~~~~~ 311 (525)
++||+||||||||+||+++|+.++..++.... ..+.. .... . ..+. ....+||||||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~-~A~~gil~IDEid~l~~-- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALV-LADGGIAVIDEIDKMRD-- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHH-HHSSSEECCTTTTCCCS--
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeE-ecCCCcEEeehhhhCCH--
Confidence 69999999999999999999999876665321 11110 0000 0 0111 12468999999998731
Q ss_pred CCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCC---------CCCCCCceEEEEecCCCC----
Q 009791 312 DRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGL---------WSSCGDERIIVFTTNHKE---- 378 (525)
Q Consensus 312 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl---------~s~~~~~~ivI~TTN~~~---- 378 (525)
...+.|+..|+.- .......+.||+|||.++
T Consensus 406 ------------------------------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~ 449 (595)
T 3f9v_A 406 ------------------------------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYI 449 (595)
T ss_dssp ------------------------------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSC
T ss_pred ------------------------------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccC
Confidence 2345566666532 111123568999999886
Q ss_pred ---------CCCccccCCCceee-EEEcCCCCHHHHHHHHHHHhCCc
Q 009791 379 ---------RLDPALLRPGRMDM-HIHMSYCGPYGFRLLAANYLGIT 415 (525)
Q Consensus 379 ---------~LDpaLlRpGRfd~-~I~~~~p~~~~r~~L~~~~l~~~ 415 (525)
.|+++|++ |||. .+..++|+.+ ...|++..+...
T Consensus 450 ~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 450 SERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp TTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred cccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 89999999 9984 5667888888 888888887653
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.24 E-value=2.2e-11 Score=151.60 Aligned_cols=137 Identities=23% Similarity=0.377 Sum_probs=99.6
Q ss_pred cceeeEeCCCCCcHHHHH-HHHHHHcCCceEEEecCCcCChhHHHHHHHHh-----------------CCCeEEEEeccc
Q 009791 244 KRGYLLYGPPGTGKSSLV-AAMANYLKFDVFDLQLGNVTRDSDLRTLLLST-----------------GNRSILVIEDID 305 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa-~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~-----------------~~~sIL~iDdID 305 (525)
++++||+||||||||++| +++++..++.++.++++...+...+.+.+... ..++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 579999999999999999 56666668899999999988877777777542 134799999999
Q ss_pred cccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCC------CceEEEEecCCCC-
Q 009791 306 CSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCG------DERIIVFTTNHKE- 378 (525)
Q Consensus 306 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~------~~~ivI~TTN~~~- 378 (525)
..-. ++- +.......+.+++. ..|++.... .++.+|+|||++.
T Consensus 1347 mp~~--d~y---------------------------g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~ 1396 (2695)
T 4akg_A 1347 LPKL--DKY---------------------------GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTD 1396 (2695)
T ss_dssp CSCC--CSS---------------------------SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTS
T ss_pred cccc--ccc---------------------------CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCcc
Confidence 5311 110 01122334444442 224443211 2478999999995
Q ss_pred ----CCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 379 ----RLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 379 ----~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
.|||+|+| || ..|++++|+.+++..|+..++.
T Consensus 1397 gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1397 PGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp TTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred CCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 89999999 99 7799999999999999988764
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.19 E-value=2e-10 Score=119.67 Aligned_cols=194 Identities=9% Similarity=0.069 Sum_probs=121.2
Q ss_pred CccccccChHHHHHHHHHH-HHHHHhHHHHHHhCCCCcceeeE--eCCCCCcHHHHHHHHHHHc---------CCceEEE
Q 009791 208 TFDTLAMEPDLKATIMEDL-DRFVRRKEFYKRVGRAWKRGYLL--YGPPGTGKSSLVAAMANYL---------KFDVFDL 275 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~l-~~fl~~~~~y~~~g~~~~rg~LL--~GppGTGKTsLa~AiA~~l---------~~~i~~l 275 (525)
..+.++|.++..+.|.+.+ ....... ...++.++| +||||||||+|++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3477899888888887766 5333210 023467899 9999999999999999887 5567778
Q ss_pred ecCCcCCh----------------------hH----HHHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhh
Q 009791 276 QLGNVTRD----------------------SD----LRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAG 329 (525)
Q Consensus 276 ~~~~l~~~----------------------~~----L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~ 329 (525)
++....+. .. +...+.....|.||+|||+|.+... +
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~--~---------------- 154 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS--P---------------- 154 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSC--T----------------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhc--c----------------
Confidence 76432111 11 2222333356899999999987420 0
Q ss_pred hhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCC--CceEEEEecCCCC---CCC---ccccCCCceeeEEEcCCCCH
Q 009791 330 AAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCG--DERIIVFTTNHKE---RLD---PALLRPGRMDMHIHMSYCGP 401 (525)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~--~~~ivI~TTN~~~---~LD---paLlRpGRfd~~I~~~~p~~ 401 (525)
......+..|+..++.... .+ ..+.||+|||.++ .++ +.+.+ |+...|+++.++.
T Consensus 155 --------------~~~~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 155 --------------RIAAEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKS 217 (412)
T ss_dssp --------------TSCHHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCH
T ss_pred --------------CcchHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCH
Confidence 0012345556665554321 02 4578888888765 345 66666 5555699999999
Q ss_pred HHHHHHHHHHhCCcCC-CcccHHHHHHHHhhcC------CCHHHHHHHH
Q 009791 402 YGFRLLAANYLGITDC-EHKLVAEIETLLKTIN------ITPAQVAEQF 443 (525)
Q Consensus 402 ~~r~~L~~~~l~~~~~-~~~~~~~i~~l~~~~~------~tpadi~~~l 443 (525)
++..+++...+..... .....+.++.+...++ -.|..+.+++
T Consensus 218 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 218 RELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVAL 266 (412)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 9999999876542110 1122344555555556 6776665544
No 85
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.16 E-value=3.7e-11 Score=124.93 Aligned_cols=121 Identities=22% Similarity=0.287 Sum_probs=88.8
Q ss_pred hCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhCCCeEEEEeccccccCCCCCCCCCC
Q 009791 239 VGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNE 318 (525)
Q Consensus 239 ~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~ 318 (525)
++++.++.++|+||||||||||++++|+.++..++.++... ......+....+..++++||++..... .|....
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~-~r~l~~- 237 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGE-SRDLPS- 237 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTT-TTTCCC-
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHH-Hhhccc-
Confidence 47888889999999999999999999999987766533221 222333445567888999999987642 111000
Q ss_pred CCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCC
Q 009791 319 NNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSY 398 (525)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~ 398 (525)
.....+.+.+.+.+||. +.|+++|||++.+ ++++||||++..++..+
T Consensus 238 -------------------------~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 238 -------------------------GQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp -------------------------CSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred -------------------------cCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 01112567788889884 4578899999999 89999999999988876
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.10 E-value=1.4e-10 Score=109.40 Aligned_cols=97 Identities=23% Similarity=0.328 Sum_probs=64.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCC-CcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCc
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRA-WKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNV 280 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~-~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l 280 (525)
.+.+|+++.+.....+.+++.+..++... ... .+++++|+||||||||+|++++|+++ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 45689999887655555666666555421 111 12799999999999999999999988 677877776543
Q ss_pred CC-------hhHHHHHHHHhCCCeEEEEeccccc
Q 009791 281 TR-------DSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 281 ~~-------~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
.. ...+..++.....+.+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11 1112223333344579999999864
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.95 E-value=4.4e-10 Score=134.82 Aligned_cols=147 Identities=12% Similarity=0.143 Sum_probs=92.6
Q ss_pred CCccccccChHHHHHHHHHHHHHHHh----------HHHHHH------hCCC----------Ccce--eeEeCCCCCcHH
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRR----------KEFYKR------VGRA----------WKRG--YLLYGPPGTGKS 258 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~----------~~~y~~------~g~~----------~~rg--~LL~GppGTGKT 258 (525)
.+|+++.+..+.|+.+++.+..++.. ++.|+. .|+. +|+| +|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 68999999999999999999988854 344555 2332 4445 999999999999
Q ss_pred HHHHHHHHHc---CCceEEEecCCcC----------------------ChhHHHHHHHH--hCCCeEEEEeccccccCCC
Q 009791 259 SLVAAMANYL---KFDVFDLQLGNVT----------------------RDSDLRTLLLS--TGNRSILVIEDIDCSVDLP 311 (525)
Q Consensus 259 sLa~AiA~~l---~~~i~~l~~~~l~----------------------~~~~L~~l~~~--~~~~sIL~iDdID~~~~~~ 311 (525)
+|++++|.+. +-+...++..... ++..|+.++.. ...||+|++|+||++++..
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999876 3444444443311 24456555543 3579999999999997521
Q ss_pred CCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCC
Q 009791 312 DRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHK 377 (525)
Q Consensus 312 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~ 377 (525)
.-++... +.+.+...+.++++|..||++.... +++|| +||+.
T Consensus 1177 ~~~g~~~---------------------~~~~~~~~r~~~q~l~~~~~~~~~~--~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEIG---------------------DSHMGLAARMMSQAMRKLAGNLKQS--NTLLI-FINQI 1218 (1706)
T ss_dssp HHHSCTT---------------------CCCTTHHHHHHHHHHHHHHHHHHHT--TCEEE-EEECE
T ss_pred ccccccc---------------------cccccHHHHHHHHHHHHHHhhhccC--CeEEE-Eeccc
Confidence 1010000 0112345567999999999975542 24444 88876
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.95 E-value=1e-09 Score=103.93 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=42.7
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhCCCeEEEEecccc
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDC 306 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~ 306 (525)
++|.++++|||||||||||++|.|+|+.++..++...-+. +. ..+......-||+|||+|.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~----f~l~~l~~~kIiiLDEad~ 114 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH----FWLEPLTDTKVAMLDDATT 114 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC----GGGGGGTTCSSEEEEEECH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch----hhhcccCCCCEEEEECCCc
Confidence 4777789999999999999999999999976554321111 11 0122333455999999994
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.92 E-value=7.6e-10 Score=112.10 Aligned_cols=96 Identities=23% Similarity=0.366 Sum_probs=62.0
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC----CceEEEecCCcC
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK----FDVFDLQLGNVT 281 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~----~~i~~l~~~~l~ 281 (525)
+.+|+++.+....+..+.+.+..|+.. .+....++++||||||||||+|+.|+|+++. .+++.+.+.++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 478999987664445566656555542 1222367999999999999999999998764 777777655331
Q ss_pred -------ChhHHHHHHHHhCCCeEEEEeccccc
Q 009791 282 -------RDSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 282 -------~~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
....+...+.......||+||||+..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11111122223335679999999754
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.83 E-value=6.3e-09 Score=114.83 Aligned_cols=52 Identities=35% Similarity=0.354 Sum_probs=41.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 204 EHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 204 ~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
..|..|++++|....++.+...+. ....+||+||||||||+|+++||+.+..
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 567889999999887765544332 1358999999999999999999999854
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.80 E-value=7.6e-08 Score=97.51 Aligned_cols=56 Identities=21% Similarity=0.148 Sum_probs=42.9
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCC
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN 279 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~ 279 (525)
..-+.++|-++..+.|.+ +. . +.++++||+|+|||+|++.+++.++..++.+++..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 345677887766665554 32 1 47999999999999999999999887777777654
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.78 E-value=4.8e-09 Score=94.76 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=47.2
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCChhHHHHHHHHhCCCeEEEEeccccc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
....++|+||+|+|||+|++++++.+ |..++.++..++.... ...++.||+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTD-------AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCG-------GGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHH-------HHhCCCEEEEeCcccc
Confidence 35679999999999999999999988 7778888887765441 1346889999999975
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.75 E-value=4.1e-07 Score=91.93 Aligned_cols=181 Identities=15% Similarity=0.071 Sum_probs=106.8
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcC----
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVT---- 281 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~---- 281 (525)
+..-+.++|-++..+.|.+.+.. | +.++++||+|+|||+|++.+++.++ ++.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 34446788888777776665431 2 5899999999999999999999886 5555553221
Q ss_pred --Ch------------------------------------hHHHHH---HHHh---CCCeEEEEeccccccCCCCCCCCC
Q 009791 282 --RD------------------------------------SDLRTL---LLST---GNRSILVIEDIDCSVDLPDRRNGN 317 (525)
Q Consensus 282 --~~------------------------------------~~L~~l---~~~~---~~~sIL~iDdID~~~~~~~r~~~~ 317 (525)
+. ..+..+ +... ..|.+|+|||++.+.....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----- 145 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----- 145 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----
Confidence 00 111222 2211 1489999999998742000
Q ss_pred CCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCC---------CCCccccCCC
Q 009791 318 ENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKE---------RLDPALLRPG 388 (525)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~---------~LDpaLlRpG 388 (525)
......+..|-..++.. ..+.+|+|+.... .....+. |
T Consensus 146 --------------------------~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~ 192 (350)
T 2qen_A 146 --------------------------RGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLY--G 192 (350)
T ss_dssp --------------------------TTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTT--T
T ss_pred --------------------------cchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccc--c
Confidence 00112233333333432 2355666654421 1122232 4
Q ss_pred ceeeEEEcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhcCCCHHHHHHH
Q 009791 389 RMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTINITPAQVAEQ 442 (525)
Q Consensus 389 Rfd~~I~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~~~tpadi~~~ 442 (525)
|+...++++..+.++..+++...+...+ .......+..+...++-.|.-+..+
T Consensus 193 ~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~~~~~~~~i~~~tgG~P~~l~~~ 245 (350)
T 2qen_A 193 RIAGEVLVKPFDKDTSVEFLKRGFREVN-LDVPENEIEEAVELLDGIPGWLVVF 245 (350)
T ss_dssp CCCEEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccceeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 7777899999999999999987764332 1223455666777777777665544
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.71 E-value=5.9e-09 Score=105.45 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=66.0
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec--CCc----C-C-hhHHHHHHHHhC-CCeEEEEeccccccCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL--GNV----T-R-DSDLRTLLLSTG-NRSILVIEDIDCSVDL 310 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~--~~l----~-~-~~~L~~l~~~~~-~~sIL~iDdID~~~~~ 310 (525)
|++..+.+||+||||||||+|+.++|...+..+..+++ .+. . + +..+..+..... .+ +|+||+|+.+...
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIGA 197 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC--
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecccccccc
Confidence 55666778999999999999999999876655443443 211 1 1 122222332222 23 9999999987431
Q ss_pred CCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccc
Q 009791 311 PDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPAL 384 (525)
Q Consensus 311 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaL 384 (525)
..... ..+.....+.+++..|+++... .++.+|++|| +...|+++
T Consensus 198 --~~~~s------------------------~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 --AGGNT------------------------TSGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred --ccccc------------------------ccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 11000 0011133456666666655432 2367888888 66777775
No 95
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.69 E-value=1.7e-08 Score=95.77 Aligned_cols=121 Identities=16% Similarity=0.136 Sum_probs=75.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc--------C-CceEEEecCCcCC---------------------hhHHHHHHH-Hh
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL--------K-FDVFDLQLGNVTR---------------------DSDLRTLLL-ST 293 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l--------~-~~i~~l~~~~l~~---------------------~~~L~~l~~-~~ 293 (525)
--+|++|+||||||+++.+++... | .++|..++..+.- ...+...+. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 468999999999999998875443 4 6676555443310 022222211 12
Q ss_pred CCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEe
Q 009791 294 GNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFT 373 (525)
Q Consensus 294 ~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~T 373 (525)
...+||+|||++.+++ .+.... ... .++..+..- .....-||++
T Consensus 86 ~~~~vliIDEAq~l~~--~~~~~~---------------------------e~~----rll~~l~~~---r~~~~~iil~ 129 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWP--ARSAGS---------------------------KIP----ENVQWLNTH---RHQGIDIFVL 129 (199)
T ss_dssp GTTCEEEETTGGGTSB--CCCTTC---------------------------CCC----HHHHGGGGT---TTTTCEEEEE
T ss_pred cCceEEEEEChhhhcc--Cccccc---------------------------hhH----HHHHHHHhc---CcCCeEEEEE
Confidence 3489999999999864 221110 001 133333321 1234677888
Q ss_pred cCCCCCCCccccCCCceeeEEEcCCCCHHH
Q 009791 374 TNHKERLDPALLRPGRMDMHIHMSYCGPYG 403 (525)
Q Consensus 374 TN~~~~LDpaLlRpGRfd~~I~~~~p~~~~ 403 (525)
|+.++.||.++++ |++.+++++.|....
T Consensus 130 tq~~~~l~~~lr~--ri~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 130 TQGPKLLDQNLRT--LVRKHYHIASNKMGM 157 (199)
T ss_dssp ESCGGGBCHHHHT--TEEEEEEEEECSSCC
T ss_pred CCCHHHHhHHHHH--HhheEEEEcCcccCc
Confidence 8889999999988 999999998765443
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.66 E-value=1.1e-07 Score=118.86 Aligned_cols=129 Identities=17% Similarity=0.136 Sum_probs=95.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhC-CCeEEEEeccccccCCCCCCCCCCCCch
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNAD 322 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~-~~sIL~iDdID~~~~~~~r~~~~~~~~~ 322 (525)
..|.+++||||||||++++++|+.+|.+++.++|++-.+...+.++|..+. ..++++||||+.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 468999999999999999999999999999999999888899999887765 579999999997621
Q ss_pred hhhHhhhhhhhccccccCCCCchhHHHHHHH----hhhh---------cCCCCCCCCceEEEEecC----CCCCCCcccc
Q 009791 323 AQSKAAGAAVRKNKTDFAGGKGQHMLTLSGL----LNFI---------DGLWSSCGDERIIVFTTN----HKERLDPALL 385 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L----Ln~i---------dgl~s~~~~~~ivI~TTN----~~~~LDpaLl 385 (525)
..-..+++. ++.+ +|-.-.......|++|.| ....|+++|.
T Consensus 712 ----------------------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk 769 (2695)
T 4akg_A 712 ----------------------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLK 769 (2695)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHH
Confidence 001111111 2222 111001122356778888 4567999999
Q ss_pred CCCceeeEEEcCCCCHHHHHHHHHH
Q 009791 386 RPGRMDMHIHMSYCGPYGFRLLAAN 410 (525)
Q Consensus 386 RpGRfd~~I~~~~p~~~~r~~L~~~ 410 (525)
+ || +.|.|.+|+.+...++...
T Consensus 770 ~--~F-r~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 770 K--SF-REFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp T--TE-EEEECCCCCHHHHHHHHHH
T ss_pred h--he-EEEEeeCCCHHHHHHHHHH
Confidence 8 88 6899999999988777543
No 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.62 E-value=8.9e-08 Score=120.46 Aligned_cols=134 Identities=18% Similarity=0.353 Sum_probs=92.6
Q ss_pred cceeeEeCCCCCcHHHHHHHH-HHHcCCceEEEecCCcCChhHHHHHHHHh------------------CCCeEEEEecc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAM-ANYLKFDVFDLQLGNVTRDSDLRTLLLST------------------GNRSILVIEDI 304 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~Ai-A~~l~~~i~~l~~~~l~~~~~L~~l~~~~------------------~~~sIL~iDdI 304 (525)
.+.+||+||||||||++++.. ++..+.+++.++++.-.+...+...+... .++.|+|||||
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 467999999999999887654 44447788899999988887887777531 12369999999
Q ss_pred ccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhc--CCCCCC------CCceEEEEecCC
Q 009791 305 DCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFID--GLWSSC------GDERIIVFTTNH 376 (525)
Q Consensus 305 D~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~id--gl~s~~------~~~~ivI~TTN~ 376 (525)
+.-- ...- +. +..+..|...+| |++... -.++.+|+|+|.
T Consensus 1384 Nmp~----~D~y-------------------------Gt---Q~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnP 1431 (3245)
T 3vkg_A 1384 NLPS----TDKY-------------------------GT---QRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNP 1431 (3245)
T ss_dssp TCCC----CCTT-------------------------SC---CHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECC
T ss_pred CCCC----cccc-------------------------cc---ccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCC
Confidence 9431 1100 01 123333334444 222211 134678999998
Q ss_pred C-----CCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 377 K-----ERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 377 ~-----~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
| ..|+|+|+| ||-. |++++|+.++...|+..++
T Consensus 1432 p~~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1432 PTDAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp TTSTTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHHHH
Confidence 8 469999999 9965 9999999999999987665
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.62 E-value=1.3e-07 Score=93.29 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=40.4
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhCCCeEEEEeccccc
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCS 307 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~~~sIL~iDdID~~ 307 (525)
+++++++||||||||||+++.|||+.+... -.++.+. . ...|.....+.|+++||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~----~--~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTN----E--NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTC----S--SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeeccc----c--ccccccccccEEEEeccccch
Confidence 556789999999999999999999987552 1222221 1 113444556778888877644
No 99
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.42 E-value=3.5e-07 Score=109.98 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC---------------------ChhHHHHHHH---H
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT---------------------RDSDLRTLLL---S 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~---------------------~~~~L~~l~~---~ 292 (525)
|++....++|+||||+|||+|+..+|..+ +..+..+++.... +..++...+. .
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 47777889999999999999999998875 4466666554321 1122222222 1
Q ss_pred hCCCeEEEEecccccc
Q 009791 293 TGNRSILVIEDIDCSV 308 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~ 308 (525)
...+.+|+||.|..+.
T Consensus 808 ~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALT 823 (1706)
T ss_dssp HTCCSEEEESCSTTCC
T ss_pred ccCCCEEEEechhhhc
Confidence 3578999999999875
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.32 E-value=3.8e-06 Score=87.52 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=60.1
Q ss_pred ccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcC---CceEEEecCCcCChhH
Q 009791 209 FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLK---FDVFDLQLGNVTRDSD 285 (525)
Q Consensus 209 f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~~~~l~~~~~ 285 (525)
++.++|.....+++.+.+.... +....+|++|++||||++++++|..... .+++.++|+.+..+--
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 3456666655566666554321 2245689999999999999999998764 6899999998743222
Q ss_pred HHHHHH-----------------HhCCCeEEEEeccccc
Q 009791 286 LRTLLL-----------------STGNRSILVIEDIDCS 307 (525)
Q Consensus 286 L~~l~~-----------------~~~~~sIL~iDdID~~ 307 (525)
-..+|- .....++||||||+.+
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l 243 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL 243 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGC
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhC
Confidence 222321 1234579999999987
No 101
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.31 E-value=3.6e-06 Score=87.08 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=59.5
Q ss_pred ccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCc--eEEEecCCcCChhHHHH
Q 009791 211 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFD--VFDLQLGNVTRDSDLRT 288 (525)
Q Consensus 211 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~--i~~l~~~~l~~~~~L~~ 288 (525)
.++|......++.+.+.... +....+|++|++||||+.+++++....+.. ++.++|+.+..+.--..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45666665555555544221 123469999999999999999999887544 99999999854433333
Q ss_pred HH-----------------HHhCCCeEEEEeccccc
Q 009791 289 LL-----------------LSTGNRSILVIEDIDCS 307 (525)
Q Consensus 289 l~-----------------~~~~~~sIL~iDdID~~ 307 (525)
+| .+......||||||+.+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l 234 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGEL 234 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGS
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhC
Confidence 33 12235578999999987
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.26 E-value=5.1e-06 Score=104.84 Aligned_cols=129 Identities=17% Similarity=0.108 Sum_probs=94.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCcCChhHHHHHHHHhC-CCeEEEEeccccccCCCCCCCCCCCCch
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNAD 322 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~~-~~sIL~iDdID~~~~~~~r~~~~~~~~~ 322 (525)
..|..++||+|||||.+++++|+.+|..++.++|++-.+...+.++|..+. ..+..+||||+.+-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~------------- 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE------------- 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH-------------
Confidence 456789999999999999999999999999999999888888888887765 588999999997621
Q ss_pred hhhHhhhhhhhccccccCCCCchhHHHHHHHhhh----------------hc-CCCCCCCCceEEEEecC----CCCCCC
Q 009791 323 AQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNF----------------ID-GLWSSCGDERIIVFTTN----HKERLD 381 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~----------------id-gl~s~~~~~~ivI~TTN----~~~~LD 381 (525)
.++|.+... ++ |-.-.-....-|++|.| ....||
T Consensus 671 -------------------------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP 725 (3245)
T 3vkg_A 671 -------------------------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLP 725 (3245)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSC
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccCh
Confidence 111211111 11 21101112356788888 346899
Q ss_pred ccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 382 PALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 382 paLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
++|.. || +.|.|.+|+.+...++.-.-.+
T Consensus 726 ~nLk~--lF-r~v~m~~Pd~~~i~ei~L~s~G 754 (3245)
T 3vkg_A 726 DNLKK--LF-RSMAMIKPDREMIAQVMLYSQG 754 (3245)
T ss_dssp HHHHT--TE-EEEECCSCCHHHHHHHHHHTTT
T ss_pred HHHHh--hc-EEEEEeCCCHHHHHHHHHHHcc
Confidence 99998 88 6699999999988777644333
No 103
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.25 E-value=5.5e-07 Score=95.16 Aligned_cols=136 Identities=16% Similarity=0.122 Sum_probs=81.2
Q ss_pred cccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcc---eeeEeCCCCCcHHHHHHHH-HHHcCCceEEEecCCcCChhHHH
Q 009791 212 LAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKR---GYLLYGPPGTGKSSLVAAM-ANYLKFDVFDLQLGNVTRDSDLR 287 (525)
Q Consensus 212 l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~r---g~LL~GppGTGKTsLa~Ai-A~~l~~~i~~l~~~~l~~~~~L~ 287 (525)
|.|.++.|+.|.-.+. . |...-+ .+||.|+||| ||+|++++ ++.+...+|...... +...|.
T Consensus 215 I~G~e~vK~aLll~L~---G--------G~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~s--s~~gLt 280 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF---S--------CVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRT--ELTDLT 280 (506)
T ss_dssp STTCHHHHHHHHHHHT---T--------CCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGC--CHHHHS
T ss_pred cCCCHHHHHHHHHHHc---C--------CccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCC--CccCce
Confidence 7777777766644331 1 111122 4999999999 99999999 777665555432211 111111
Q ss_pred -------H-----HHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhh
Q 009791 288 -------T-----LLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLN 355 (525)
Q Consensus 288 -------~-----l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn 355 (525)
. =........|+|||||+.+- ..+.+.|+.
T Consensus 281 ~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~--------------------------------------~~~qsaLlE 322 (506)
T 3f8t_A 281 AVLKEDRGWALRAGAAVLADGGILAVDHLEGAP--------------------------------------EPHRWALME 322 (506)
T ss_dssp EEEEESSSEEEEECHHHHTTTSEEEEECCTTCC--------------------------------------HHHHHHHHH
T ss_pred EEEEcCCCcccCCCeeEEcCCCeeehHhhhhCC--------------------------------------HHHHHHHHH
Confidence 0 00112356899999999762 235566666
Q ss_pred hhc-------CCCCCCCCceEEEEecCCCC-----------CCCccccCCCceeeEEE-cCCCCHHH
Q 009791 356 FID-------GLWSSCGDERIIVFTTNHKE-----------RLDPALLRPGRMDMHIH-MSYCGPYG 403 (525)
Q Consensus 356 ~id-------gl~s~~~~~~ivI~TTN~~~-----------~LDpaLlRpGRfd~~I~-~~~p~~~~ 403 (525)
.|+ |. .-+....||+|+|..+ .|+++++. |||..+. +++|+.+.
T Consensus 323 aMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 323 AMDKGTVTVDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp HHHHSEEEETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred HHhCCcEEECCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 654 22 1123478999999875 88999999 9988654 57776544
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.23 E-value=1e-06 Score=107.26 Aligned_cols=114 Identities=12% Similarity=0.154 Sum_probs=71.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC---------------------ChhHHHHHHH---H
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT---------------------RDSDLRTLLL---S 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~---------------------~~~~L~~l~~---~ 292 (525)
|++.+++++||||||||||+|+.++|.+. |..+..+++.... ....+.+.+. .
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37888999999999999999999998775 4556666655321 1122223332 2
Q ss_pred hCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEE
Q 009791 293 TGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVF 372 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~ 372 (525)
...+++|+||+++.+.+...-++... +.......+.++++|..|++.....+ ++|+
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~---------------------~~~~~~~~R~lsqlL~~L~~~~~~~~---v~VI 1558 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIG---------------------DSHMGLAARMMSQAMRKLAGNLKQSN---TLLI 1558 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTT---------------------CCCTTHHHHHHHHHHHHHHHHHHTTT---CEEE
T ss_pred cCCCCEEEEcChhHhccccccccccc---------------------ccccchHHHHHHHHHHHHHHHHHhCC---cEEE
Confidence 36899999999998864110000000 00111235678889988888766533 5666
Q ss_pred ecCCC
Q 009791 373 TTNHK 377 (525)
Q Consensus 373 TTN~~ 377 (525)
+||.+
T Consensus 1559 ~tNq~ 1563 (2050)
T 3cmu_A 1559 FINQI 1563 (2050)
T ss_dssp EEECE
T ss_pred EEccc
Confidence 66654
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.02 E-value=1.5e-05 Score=73.92 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
+.|.||+|+|||||++.|++.++..+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 679999999999999999999875443
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.96 E-value=5.3e-05 Score=77.01 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=80.2
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc---CC-ceEEEecCCcCChhHHHHHHHHh------CCCeEEEEecccc-ccCCC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL---KF-DVFDLQLGNVTRDSDLRTLLLST------GNRSILVIEDIDC-SVDLP 311 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l---~~-~i~~l~~~~l~~~~~L~~l~~~~------~~~sIL~iDdID~-~~~~~ 311 (525)
....||||||+|+||++.++++++.+ ++ +...+.... +.++++++..+ ...-|++|||+|. +.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~--- 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN--- 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC---
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC---
Confidence 45689999999999999999998876 33 222222222 23455555433 3567999999986 42
Q ss_pred CCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCC------CCCCcccc
Q 009791 312 DRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHK------ERLDPALL 385 (525)
Q Consensus 312 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~------~~LDpaLl 385 (525)
....+.|+..++... ...++|++|+.+ ..+.+++.
T Consensus 91 -----------------------------------~~~~~aLl~~le~p~----~~~~~il~~~~~~~~~~~~k~~~~i~ 131 (343)
T 1jr3_D 91 -----------------------------------AAINEQLLTLTGLLH----DDLLLIVRGNKLSKAQENAAWFTALA 131 (343)
T ss_dssp -----------------------------------TTHHHHHHHHHTTCB----TTEEEEEEESCCCTTTTTSHHHHHHT
T ss_pred -----------------------------------hHHHHHHHHHHhcCC----CCeEEEEEcCCCChhhHhhHHHHHHH
Confidence 113455777777542 335555555543 35667777
Q ss_pred CCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 386 RPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 386 RpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
. |. ..+++..++..+....++..+.
T Consensus 132 s--r~-~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 132 N--RS-VQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp T--TC-EEEEECCCCTTHHHHHHHHHHH
T ss_pred h--Cc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 6 43 5688888888888877777664
No 107
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.90 E-value=0.00025 Score=77.24 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHH
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~ 266 (525)
|.....++|-++..+.|.+.+.. +....+-++++||+|+|||+||..+++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 33446688888887777665531 012245689999999999999999975
No 108
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.64 E-value=0.0011 Score=77.95 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=96.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc-------CCceEEEec
Q 009791 205 HPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL-------KFDVFDLQL 277 (525)
Q Consensus 205 ~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l-------~~~i~~l~~ 277 (525)
.|.....++|.++..++|.+.+... -...+-+.|+|++|.|||+||+.+++.. ...++-+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 4555667889888888887765311 1224568899999999999999998762 223445555
Q ss_pred CCcCC---------------------------hhHHHHHHHHh----CCCeEEEEeccccccCCCCCCCCCCCCchhhhH
Q 009791 278 GNVTR---------------------------DSDLRTLLLST----GNRSILVIEDIDCSVDLPDRRNGNENNADAQSK 326 (525)
Q Consensus 278 ~~l~~---------------------------~~~L~~l~~~~----~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~ 326 (525)
+.... ...+...+... .++.+|+|||++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------ 249 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------ 249 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH------------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH------------------
Confidence 54211 11222222211 348899999988431
Q ss_pred hhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCC-CCHHHHH
Q 009791 327 AAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSY-CGPYGFR 405 (525)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~-p~~~~r~ 405 (525)
. ++.+ +.+--||+||..+...... . .....+.++. .+.++-.
T Consensus 250 ----------------------~-------~~~~----~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~ 292 (1249)
T 3sfz_A 250 ----------------------V-------LKAF----DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGL 292 (1249)
T ss_dssp ----------------------H-------HTTT----CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHH
T ss_pred ----------------------H-------HHhh----cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHH
Confidence 0 1111 1123577787765433211 1 2235577775 7888888
Q ss_pred HHHHHHhCCcCCCcccHHHHHHHHhhcCCCHH
Q 009791 406 LLAANYLGITDCEHKLVAEIETLLKTINITPA 437 (525)
Q Consensus 406 ~L~~~~l~~~~~~~~~~~~i~~l~~~~~~tpa 437 (525)
+|+..+.... .....+...++++..+.-|-
T Consensus 293 ~l~~~~~~~~--~~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 293 EILSLFVNMK--KEDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp HHHHHHHTSC--STTCCTHHHHHHHHTTTCHH
T ss_pred HHHHHhhCCC--hhhCcHHHHHHHHHhCCCHH
Confidence 8888776543 22223345566666655563
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.62 E-value=0.00018 Score=67.55 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=32.7
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGN 279 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~ 279 (525)
|++...-++|+||||+|||+|+..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5666677999999999999999999986567777776554
No 110
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.60 E-value=0.00012 Score=75.19 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=47.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC---------------------ChhHHHHHHH---H
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT---------------------RDSDLRTLLL---S 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~---------------------~~~~L~~l~~---~ 292 (525)
|++...-++|+||||+|||+|+..+|..+ +..++.++..... +..++...+. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56666679999999999999999999875 5666666654421 1112222222 2
Q ss_pred hCCCeEEEEeccccccC
Q 009791 293 TGNRSILVIEDIDCSVD 309 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~~ 309 (525)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 35688999999987753
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.58 E-value=3.2e-05 Score=71.13 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=29.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
++.++|.|||||||||+++++|..+++++++.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457899999999999999999999999988654
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=4.1e-05 Score=71.66 Aligned_cols=34 Identities=32% Similarity=0.357 Sum_probs=29.9
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
..+.++|.|||||||||+++++|..+++.+++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457999999999999999999999999887654
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.53 E-value=6.5e-05 Score=68.46 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=29.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
+-++|.||||+||||+++++|..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 468899999999999999999999988887664
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.50 E-value=0.00019 Score=68.53 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=31.2
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHH--c-------CCceEEEecCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANY--L-------KFDVFDLQLGN 279 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~--l-------~~~i~~l~~~~ 279 (525)
|++...-++|+||||+|||+|+..+|.. + +..++.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5666677999999999999999999985 3 34566666544
No 115
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.49 E-value=8.1e-05 Score=67.11 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=28.1
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
-++|.||||+||||+++.+|..+++++++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999999887765
No 116
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.49 E-value=4.8e-05 Score=70.15 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=29.8
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.+.+.-++|.|+||+||||+++.+|..+++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34456788999999999999999999999887763
No 117
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.46 E-value=0.0054 Score=66.44 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=92.0
Q ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHH----HcC--Cc-eEEEecCCcC----
Q 009791 213 AMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMAN----YLK--FD-VFDLQLGNVT---- 281 (525)
Q Consensus 213 ~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~----~l~--~~-i~~l~~~~l~---- 281 (525)
+|-++.+++|.+.+.. . +....+.+.++|++|.|||+||+.+++ ... ++ ++-++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~----~------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE----M------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHH----H------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhc----c------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 3888888888877632 1 112246788999999999999999997 232 22 1223333310
Q ss_pred --------------------------ChhHHHHHHHHh--CC-CeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhh
Q 009791 282 --------------------------RDSDLRTLLLST--GN-RSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAV 332 (525)
Q Consensus 282 --------------------------~~~~L~~l~~~~--~~-~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (525)
+...+...+... .+ +.+|||||++..-
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------------------ 256 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------------------ 256 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------------------
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------------------
Confidence 001122333222 33 7999999988431
Q ss_pred hccccccCCCCchhHHHHHHHhhhhcCCCCCCCCceEEEEecCCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHh
Q 009791 333 RKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYL 412 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~~~~~~ivI~TTN~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l 412 (525)
.. .+.. . .+-.||+||....... . . +-.+..++++..+.++-.+||..+.
T Consensus 257 --------------~~---~~~~---~------~gs~ilvTTR~~~v~~-~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 257 --------------TI---RWAQ---E------LRLRCLVTTRDVEISN-A-A--SQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp --------------HH---HHHH---H------TTCEEEEEESBGGGGG-G-C--CSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred --------------hh---cccc---c------CCCEEEEEcCCHHHHH-H-c--CCCCeEEECCCCCHHHHHHHHHHHh
Confidence 01 1111 1 1135677777543221 1 1 1234668999999999999999885
Q ss_pred CCcCCCcccHHHHHHHHhhcCCCHHHH
Q 009791 413 GITDCEHKLVAEIETLLKTINITPAQV 439 (525)
Q Consensus 413 ~~~~~~~~~~~~i~~l~~~~~~tpadi 439 (525)
..........+...++++..+..|--|
T Consensus 307 ~~~~~~~~~~~~~~~I~~~c~GlPLAl 333 (549)
T 2a5y_B 307 MPMPVGEKEEDVLNKTIELSSGNPATL 333 (549)
T ss_dssp CCCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCCchhHHHHHHHHHHHhCCChHHH
Confidence 433211222334566777776667444
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.43 E-value=0.00081 Score=63.35 Aligned_cols=37 Identities=22% Similarity=0.106 Sum_probs=28.3
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEe
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQ 276 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~ 276 (525)
|++...-++|+||||+|||+|++.+|..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45556678999999999999999999664 44555444
No 119
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.37 E-value=7.4e-05 Score=68.18 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=27.3
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.++|.|||||||||+++++|..+++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 488999999999999999999999887764
No 120
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.35 E-value=8.5e-05 Score=68.01 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=28.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
++.++|+|+||+||||+++++|..+++.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34689999999999999999999999888764
No 121
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.34 E-value=8.6e-05 Score=68.15 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=28.2
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
-++|.|+||+||||+++.+|..+|+++++.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4889999999999999999999999988654
No 122
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.33 E-value=9.4e-05 Score=66.92 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=29.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
..++|.|+|||||||+++.+|..+|+++++.|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46899999999999999999999999988753
No 123
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.32 E-value=0.00075 Score=69.56 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC---------------------ChhHHHHHHHH---
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT---------------------RDSDLRTLLLS--- 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~---------------------~~~~L~~l~~~--- 292 (525)
|++..+-++|+||||+|||+|+..+|..+ +..+..+++..-. +...+...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56667779999999999999999998764 5667766654321 11223333322
Q ss_pred hCCCeEEEEecccccc
Q 009791 293 TGNRSILVIEDIDCSV 308 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~ 308 (525)
...+.+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 2468899999999886
No 124
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.32 E-value=0.0001 Score=66.73 Aligned_cols=30 Identities=37% Similarity=0.708 Sum_probs=26.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
.-+.|.|||||||||+++.+|..++..+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458899999999999999999999986665
No 125
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.31 E-value=0.00011 Score=67.94 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=28.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHH-cCCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANY-LKFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~-l~~~i~~l~ 276 (525)
+.-++|.|+|||||||+++.+|.. +|++++++|
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 345899999999999999999999 788877654
No 126
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.25 E-value=0.00015 Score=70.76 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
-++|.|||||||||+++++|..+++.+++.|-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887764
No 127
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.25 E-value=0.00012 Score=66.21 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=27.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
-++|.|+||+||||+++.+|..+++++++.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 5889999999999999999999998887643
No 128
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.24 E-value=0.0005 Score=70.43 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=47.2
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC---------------------ChhHHHHHHH---H
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT---------------------RDSDLRTLLL---S 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~---------------------~~~~L~~l~~---~ 292 (525)
|++..+-++|+||||+|||+|+..+|..+ +..+..++..... +..++..++. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56666779999999999999999998664 5566666654321 1122222222 2
Q ss_pred hCCCeEEEEecccccc
Q 009791 293 TGNRSILVIEDIDCSV 308 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~ 308 (525)
...+.+|+||++..+.
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 2458999999999886
No 129
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.22 E-value=0.00018 Score=66.90 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=37.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC--------CcCC----------hhHHHHHHHHhC-CCeEEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG--------NVTR----------DSDLRTLLLSTG-NRSILVIE 302 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~--------~l~~----------~~~L~~l~~~~~-~~sIL~iD 302 (525)
.-++++||||+|||+++..++..+ +..++.+... .+.+ ...+..++.... ...+|+||
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviID 83 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFID 83 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEE
Confidence 357899999999999987666543 5554443211 0000 011222333333 46799999
Q ss_pred ccccc
Q 009791 303 DIDCS 307 (525)
Q Consensus 303 dID~~ 307 (525)
||..+
T Consensus 84 E~Q~~ 88 (184)
T 2orw_A 84 EVQFF 88 (184)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99865
No 130
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.22 E-value=0.00018 Score=67.20 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=27.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.-++|.||||+||||+++.+|..+++++++.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4588999999999999999999999887765
No 131
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.21 E-value=0.0006 Score=83.34 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=52.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcCCh------------------------hHHHHHHHH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVTRD------------------------SDLRTLLLS 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~~~------------------------~~L~~l~~~ 292 (525)
|++..+.+||+||||||||+|+.+++.+. |..++.+++.+.... ..+.+.+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57778889999999999999999998654 677888777664221 123334455
Q ss_pred hCCCeEEEEeccccccC
Q 009791 293 TGNRSILVIEDIDCSVD 309 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~~ 309 (525)
...+.+|+||++..+..
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 67899999999998853
No 132
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.20 E-value=0.00016 Score=66.45 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=27.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
+.-++|.|+|||||||+++.+|..+++++++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 34588999999999999999999999877653
No 133
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.20 E-value=0.00015 Score=65.12 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
-++|.||||+||||+++.+ ..+|++++++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8999887764
No 134
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.00046 Score=68.68 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=28.1
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
.+.-++|.||||+||||++++++..++..++.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 35568899999999999999999998544555553
No 135
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.17 E-value=0.00079 Score=69.15 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=49.3
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecCCcC---------------------ChhHHHHHHH---H
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLGNVT---------------------RDSDLRTLLL---S 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~~l~---------------------~~~~L~~l~~---~ 292 (525)
|++..+-++|+||||+|||+|+..+|..+ +..++.+++.... +...+..++. .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56777789999999999999999998765 5677777763321 1123333332 2
Q ss_pred hCCCeEEEEecccccc
Q 009791 293 TGNRSILVIEDIDCSV 308 (525)
Q Consensus 293 ~~~~sIL~iDdID~~~ 308 (525)
...+.+|+||.+..+.
T Consensus 139 ~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 139 SGAVDVIVVDSVAALT 154 (356)
T ss_dssp HTCCSEEEEECGGGCC
T ss_pred ccCCCEEEEcCHHHhc
Confidence 3568899999999875
No 136
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.17 E-value=0.00018 Score=64.80 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=27.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
++|.|+||+||||+++.++..+++++++.|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 789999999999999999999998887643
No 137
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.16 E-value=0.00051 Score=69.47 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=32.4
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---------CCceEEEecCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---------KFDVFDLQLGN 279 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---------~~~i~~l~~~~ 279 (525)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56777779999999999999999999875 45667776654
No 138
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.15 E-value=0.00025 Score=56.22 Aligned_cols=66 Identities=5% Similarity=-0.116 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhh
Q 009791 397 SYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITPAQVAEQFMK-------SEDADVALAALIKLLKEKE 464 (525)
Q Consensus 397 ~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpadi~~~l~~-------~~~~~~al~~l~~al~~~~ 464 (525)
|.|+.++|++|++.|+... ......+++.++..+ |||+|||..++.. .+...+..++|.++++...
T Consensus 1 plPd~~~R~~Il~~~l~~~--~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKM--NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTS--EECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCC--CCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999865 223344678888888 9999999987652 2222344556666665544
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.15 E-value=0.00019 Score=65.85 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=28.8
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.++-++|.|+|||||||+++.+|..+++.+++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 345689999999999999999999999877765
No 140
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.15 E-value=0.00046 Score=70.68 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
|++...-+.|+||||+|||+|+..+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56666779999999999999999999887
No 141
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.14 E-value=0.00022 Score=66.52 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=28.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
++-++|.||||+||||+++.++..+|+.+++.|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346899999999999999999999987776543
No 142
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.13 E-value=0.00016 Score=66.36 Aligned_cols=31 Identities=29% Similarity=0.629 Sum_probs=26.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.-++|.||||+||||+++.+|..+++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3478999999999999999999999776644
No 143
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.11 E-value=0.00021 Score=65.91 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=28.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+.-+.|.|+||+||||+++.+|..+++++++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 346889999999999999999999998877653
No 144
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.11 E-value=0.00014 Score=65.99 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=23.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHH-HcCCceE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMAN-YLKFDVF 273 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~-~l~~~i~ 273 (525)
.-++|.||||+||||+++.++. .+++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4588999999999999999998 5554443
No 145
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.10 E-value=0.00084 Score=66.09 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44555668999999999999999998754
No 146
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.10 E-value=0.00017 Score=66.14 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=25.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC-----CceEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK-----FDVFD 274 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~-----~~i~~ 274 (525)
.-++|.||||+||||+++.+|..++ +++++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 3588999999999999999999987 65553
No 147
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.09 E-value=0.00023 Score=67.14 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=26.6
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 68999999999999999999999887765
No 148
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.08 E-value=0.00021 Score=66.06 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=28.0
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
+.-++|.|+||+||||+++.+|..+++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35688999999999999999999999777654
No 149
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.08 E-value=0.00091 Score=67.38 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=44.5
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc-----CCceEEEecCCcC---------------------ChhHH-HHHHHH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL-----KFDVFDLQLGNVT---------------------RDSDL-RTLLLS 292 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l-----~~~i~~l~~~~l~---------------------~~~~L-~~l~~~ 292 (525)
|++.. -++++||||+|||+|+..++..+ +..+..++...-. +..++ ..+...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45655 57899999999999977766543 5566667654321 11222 222222
Q ss_pred -----hCCCeEEEEeccccccC
Q 009791 293 -----TGNRSILVIEDIDCSVD 309 (525)
Q Consensus 293 -----~~~~sIL~iDdID~~~~ 309 (525)
...|.+|+||-|..+..
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 23689999999998863
No 150
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.07 E-value=0.0002 Score=67.83 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=27.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.-++|.|+||+||||+++.+|..+++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3588999999999999999999999887765
No 151
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.07 E-value=0.00025 Score=66.80 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=26.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 68999999999999999999999887765
No 152
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.06 E-value=0.00022 Score=67.92 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=28.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
+.-++|.||||+||||+++.+|..+++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45689999999999999999999999877654
No 153
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.04 E-value=0.0014 Score=66.72 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=31.8
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---------CCceEEEecCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---------KFDVFDLQLGN 279 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---------~~~i~~l~~~~ 279 (525)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56666678999999999999999999862 45666776554
No 154
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.04 E-value=0.0003 Score=66.63 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=27.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.-++|.|+||+||||+++.+|..+++.+++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4588999999999999999999999877654
No 155
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.03 E-value=0.00033 Score=64.39 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=27.9
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
++.+.-+.|.||||+||||++++||..++...+.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 344556889999999999999999987665544444
No 156
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.03 E-value=0.00031 Score=63.86 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.-++|.||||+||||+++.++..+|..+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 4588999999999999999999988766543
No 157
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.00 E-value=0.00035 Score=65.11 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=27.8
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.-++|.|+|||||||+++.+|..+++.+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 45889999999999999999999998776643
No 158
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.99 E-value=0.00037 Score=56.57 Aligned_cols=70 Identities=7% Similarity=-0.057 Sum_probs=50.1
Q ss_pred EcCCCCHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhc
Q 009791 395 HMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITPAQVAEQFMK-------SEDADVALAALIKLLKEKERN 466 (525)
Q Consensus 395 ~~~~p~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~ 466 (525)
+-+.|+.++|++|++.++...+ .....+++.|++.+ |||+|||.+++.. .....+..++|.++++..++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~--l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMN--LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSE--ECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCC--CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 3478999999999999998652 22344577888888 9999999987752 222334566677777766553
No 159
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.97 E-value=0.00034 Score=63.80 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=22.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
.-++|.|+||+||||+++.+|..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999877
No 160
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.96 E-value=0.00036 Score=66.83 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=27.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.-++|.|+|||||||+++.||..+++.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3588999999999999999999999877654
No 161
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.96 E-value=0.00063 Score=62.09 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=28.9
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~ 276 (525)
+.-+.|.|++|+||||+++.++..+ |++++.++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 3457799999999999999999998 88888776
No 162
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.96 E-value=0.00056 Score=62.75 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=28.1
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
+.|.|+||+||||+++.++..+ |+++++.+-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6799999999999999999998 899888763
No 163
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.93 E-value=0.00072 Score=65.75 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=29.4
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecC
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLG 278 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~ 278 (525)
..+.-++|.||||+||||+++.++..++..++.++..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D 66 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGD 66 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecH
Confidence 3445688999999999999999999998655555543
No 164
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.92 E-value=0.00026 Score=67.11 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=26.9
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
+.-++|.||||+||||+++.+|..++..+++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3468899999999999999999999976554
No 165
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.91 E-value=0.00062 Score=63.52 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=26.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
+.-+.|.||+|+||||++++|+..+|..+++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4458899999999999999999999765543
No 166
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.88 E-value=0.0029 Score=69.09 Aligned_cols=33 Identities=36% Similarity=0.383 Sum_probs=26.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
+-+++.||||||||+++.+++..+ +..+..+-.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 568899999999999999998865 566665543
No 167
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.88 E-value=0.00039 Score=65.62 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=26.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999877664
No 168
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.87 E-value=0.0006 Score=68.99 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=30.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
++.++|.||+|||||+++.++|..++..++++|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4578999999999999999999999998888864
No 169
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.86 E-value=0.00068 Score=65.43 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=26.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
+.-+.|.||||+||||+++.||..+|+..++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568899999999999999999999876543
No 170
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.85 E-value=0.00054 Score=66.28 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.6
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
.+.-++|.||||+||||+++.++..+++.+++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 345689999999999999999999998877754
No 171
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.85 E-value=0.00065 Score=64.86 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=27.4
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
..++-++|.||||+||+|.++.||..+|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 44567889999999999999999999987544
No 172
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.76 E-value=0.00081 Score=64.03 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=25.8
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
++|.||||+||||+++.+|..+++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 68999999999999999999999766554
No 173
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.76 E-value=0.00051 Score=63.99 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=26.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
-+.|.||+||||||+++.+|+ +|+++++.|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 378999999999999999999 888877754
No 174
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.0016 Score=60.46 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=25.8
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCc--eEEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFD--VFDL 275 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~--i~~l 275 (525)
.-++|.|+||+||||+++.+|..++.. ++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 357899999999999999999998763 5443
No 175
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.74 E-value=0.001 Score=61.20 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=26.6
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
+.|.|++||||||+++.++..+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6789999999999999999999 998876643
No 176
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.73 E-value=0.00088 Score=63.32 Aligned_cols=30 Identities=37% Similarity=0.630 Sum_probs=26.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
.-+.|.||+||||||+++.+++.+|+++++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 357899999999999999999999977664
No 177
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.72 E-value=0.00095 Score=61.91 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=28.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc-CCceEEEec
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL-KFDVFDLQL 277 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l-~~~i~~l~~ 277 (525)
.-+.|.|+||+||||+++.+|..+ |+++++++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 457899999999999999999999 588887654
No 178
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.72 E-value=0.00087 Score=61.96 Aligned_cols=27 Identities=30% Similarity=0.727 Sum_probs=24.7
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
+.|.|+||+||||+++.+|+.++..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 679999999999999999999998655
No 179
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.70 E-value=0.00096 Score=63.13 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=24.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
++|.||||+||+|.++.||..+|++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 678999999999999999999987654
No 180
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.69 E-value=0.00076 Score=62.68 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=28.1
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
-+.|.|++|+||||+++.+|..+|+++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999999888754
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.69 E-value=0.00068 Score=63.31 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=26.0
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
-+.|.||+||||||+++.+|. +|+++++.|
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 467999999999999999998 888877654
No 182
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.67 E-value=0.0007 Score=66.06 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=29.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
...+.|.||+|+||||+++.+|..+++++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 346899999999999999999999999888753
No 183
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.67 E-value=0.0006 Score=62.39 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.1
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
-++|.||||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 184
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.66 E-value=0.00079 Score=62.97 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=27.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
-+.|.|++||||||+++.++..+|+++++.|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4679999999999999999999999888754
No 185
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.64 E-value=0.0016 Score=60.74 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.1
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.+.-+.|.||+|+||||+++++|..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999988
No 186
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.62 E-value=0.0013 Score=63.50 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=27.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
+.-+.|.||||+||||+++.||..+++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 34688999999999999999999999877654
No 187
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.60 E-value=0.00062 Score=69.68 Aligned_cols=50 Identities=20% Similarity=0.431 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 216 PDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 216 ~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
+.+.+.+++.+..++.. | ....++|.||||+|||+++++||+.++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~-------g--~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED-------N--YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTT-------C--SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------C--CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 45666666666544321 1 12358999999999999999999999988744
No 188
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.58 E-value=0.0015 Score=63.77 Aligned_cols=32 Identities=34% Similarity=0.456 Sum_probs=27.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH---cCCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY---LKFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~---l~~~i~~l~ 276 (525)
.-++|.|+||+||||+++.++.. +|+.++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35889999999999999999998 678777444
No 189
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.54 E-value=0.0029 Score=59.57 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=25.0
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
|++...-+.|.||+|+|||||++.||..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666669999999999999999999854
No 190
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.50 E-value=0.0052 Score=58.80 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=40.2
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC-------CcC-------------ChhHHHHHHHHh---CCCeEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG-------NVT-------------RDSDLRTLLLST---GNRSIL 299 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~-------~l~-------------~~~~L~~l~~~~---~~~sIL 299 (525)
-++++||||+|||+++..++..+ +..++.+... .+. ...++...+... ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 36788999999999988888766 5566655211 111 112344444332 247899
Q ss_pred EEeccccc
Q 009791 300 VIEDIDCS 307 (525)
Q Consensus 300 ~iDdID~~ 307 (525)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999865
No 191
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.49 E-value=0.00069 Score=63.24 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
+.-+.|.|+|||||||+++.+|..++...+++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 34578999999999999999999886544433
No 192
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.49 E-value=0.0017 Score=62.21 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=26.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
.+++.|+||+|||+++-++|..+ |.++..+++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 48899999999999999999876 777765555
No 193
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.45 E-value=0.0013 Score=60.81 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=27.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.-+.|.|++||||||+++.+|.. |+++++.|
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45889999999999999999998 88887654
No 194
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.39 E-value=0.0016 Score=61.22 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=28.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.-+.|.|++|||||++++.+|..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 35789999999999999999999998887654
No 195
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.38 E-value=0.0031 Score=66.79 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=39.2
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CC-ceEEEecC
Q 009791 203 LEHPATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KF-DVFDLQLG 278 (525)
Q Consensus 203 ~~~~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~-~i~~l~~~ 278 (525)
...|.+|++| .+++++.+.. +..++... ...++|.||||||||+++.+++..+ +. .++.+..+
T Consensus 17 ~~~p~~~~~L--n~~Q~~av~~-~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 17 RGSHMTFDDL--TEGQKNAFNI-VMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp ----CCSSCC--CHHHHHHHHH-HHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred ccCCCccccC--CHHHHHHHHH-HHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 3567788876 5566555443 33333321 2378999999999999999999887 33 45544433
No 196
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.38 E-value=0.013 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|+||+|||||+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 197
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.37 E-value=0.0015 Score=61.48 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=26.8
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.-+.|.|++|+||||+++.+|. +|+++++.|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 3578999999999999999998 888877654
No 198
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.29 E-value=0.0029 Score=61.46 Aligned_cols=30 Identities=33% Similarity=0.591 Sum_probs=26.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
.-+.|.||+|+||||+++.+|..||+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 347799999999999999999999987764
No 199
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.26 E-value=0.0046 Score=63.37 Aligned_cols=60 Identities=25% Similarity=0.441 Sum_probs=38.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC----CceEEEec-CCc--------------C-ChhHHHHHHHHh--CCCeEEEEec
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK----FDVFDLQL-GNV--------------T-RDSDLRTLLLST--GNRSILVIED 303 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~----~~i~~l~~-~~l--------------~-~~~~L~~l~~~~--~~~sIL~iDd 303 (525)
-+++.||+|+||||++++|++.+. ..++.+.- .+. . ....+...+..+ .+|-||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 478999999999999999998873 33433321 110 0 111233344333 5799999999
Q ss_pred cc
Q 009791 304 ID 305 (525)
Q Consensus 304 ID 305 (525)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 200
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.25 E-value=0.0016 Score=60.88 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=25.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc-CCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL-KFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l-~~~i~~l~ 276 (525)
.-+.|.||||+||||+++.+++.+ ++.++..|
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 347799999999999999999987 55554433
No 201
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.25 E-value=0.0013 Score=61.53 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=23.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
+.-+.|.|+|||||||+++.+|..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345889999999999999999998753
No 202
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.25 E-value=0.0026 Score=59.46 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=25.2
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.+.++-++|.||||+||||++++++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45566788999999999999999999885
No 203
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.24 E-value=0.0049 Score=56.02 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.2
Q ss_pred cceeeEeCCCCCcHHHHHHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAA 263 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~A 263 (525)
+.-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34578999999999999993
No 204
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.24 E-value=0.0025 Score=58.51 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=21.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
-+.|.||+|+||||+++.|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 205
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.24 E-value=0.0079 Score=56.31 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=26.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
-+++|+++|.||||+|-++|-.. |..++.+.+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 37799999999999999998765 777777743
No 206
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.23 E-value=0.0015 Score=64.69 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=24.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc-CCceE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL-KFDVF 273 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l-~~~i~ 273 (525)
.-++|.|+||+||||+++.++..+ ++.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 458899999999999999999974 65444
No 207
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.23 E-value=0.0021 Score=62.22 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=25.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCce
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDV 272 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i 272 (525)
+.-+.|.|+|||||||+++.+|..+++++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 34588999999999999999999999874
No 208
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.20 E-value=0.0021 Score=65.26 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=31.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV 280 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l 280 (525)
+-++|.||+|+|||+|+..||..++..+++.|--.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 458899999999999999999999998888776544
No 209
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0033 Score=60.12 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=26.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
-+.|.|++|+||||+++.+|..+|+++++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 477999999999999999999999887764
No 210
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.20 E-value=0.0045 Score=56.67 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+.-++|.|+||+||||+++.+|..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999874
No 211
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.15 E-value=0.0024 Score=60.09 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=27.0
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.++++|.||+|+|||+|+.+++...+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 56899999999999999999998876 555443
No 212
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.15 E-value=0.0032 Score=63.16 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=30.6
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCceEEEecC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLG 278 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~ 278 (525)
.++-+++.||+|+|||+|+..+|..++..++..|.-
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 345688999999999999999999999887776543
No 213
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.13 E-value=0.0079 Score=66.48 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=36.1
Q ss_pred CCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
..|-+-.+++.+++.|...+. . +.-.|++||||||||+.+.++..++ +..+..+..+
T Consensus 183 ~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 183 LTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 334344568888887766542 1 1246899999999997666655444 5555555443
No 214
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.13 E-value=0.022 Score=61.77 Aligned_cols=40 Identities=8% Similarity=0.103 Sum_probs=32.5
Q ss_pred ceEEEEecCCCC--CCCccccCCCceeeEEEcCCCCHHHHHHHH
Q 009791 367 ERIIVFTTNHKE--RLDPALLRPGRMDMHIHMSYCGPYGFRLLA 408 (525)
Q Consensus 367 ~~ivI~TTN~~~--~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~ 408 (525)
++.+|++|.+|. .|+..++. -|...|.+...+..+.+.++
T Consensus 378 GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 378 GIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHH
T ss_pred CeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhc
Confidence 488999999987 78887765 67788889888888877765
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.12 E-value=0.0032 Score=57.63 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=22.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+-+.|.||+|+|||||+++|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999764
No 216
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.06 E-value=0.0041 Score=59.11 Aligned_cols=39 Identities=26% Similarity=0.187 Sum_probs=30.1
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
|++...-++|+||||+|||+|+..+|..+ +..++.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 56666779999999999999988887653 5566666644
No 217
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.06 E-value=0.0021 Score=67.35 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=27.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
+.-++|.|+||+||||++++++..+++.+++.|
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D 290 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD 290 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc
Confidence 456889999999999999999999987665443
No 218
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.04 E-value=0.0036 Score=50.01 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhcCC
Q 009791 400 GPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITPAQVAEQFMK-------SEDADVALAALIKLLKEKERNGS 468 (525)
Q Consensus 400 ~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~~~ 468 (525)
+.++|.+|++.++... ......+++.++..+ |||+|||..++.. .....+..++|.++++..+|+..
T Consensus 2 d~~~R~~Il~~~l~~~--~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKM--NLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTS--CBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 6789999999999865 333345678888888 9999999988753 23345677888888888887654
No 219
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.03 E-value=0.0032 Score=58.30 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
+.-+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4457899999999999999999987
No 220
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.02 E-value=0.0096 Score=55.43 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=27.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
+.-+.|.||+|+||||+++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3447799999999999999999876 5666655433
No 221
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.01 E-value=0.007 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.6
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+++.|++|+|||+|++++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998754
No 222
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.99 E-value=0.0032 Score=64.09 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=28.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
.-++|.||+|+|||+++..||..++..++..|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999977766553
No 223
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.99 E-value=0.0046 Score=58.01 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.0
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcC----CceEEEe
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLK----FDVFDLQ 276 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~----~~i~~l~ 276 (525)
.+.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 345688999999999999999999875 4455554
No 224
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.96 E-value=0.0065 Score=60.98 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.5
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
|++...-++|+||||+|||+|+..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666677999999999999999999875
No 225
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.95 E-value=0.026 Score=65.22 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=37.6
Q ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHH------cCCceEEEecCC
Q 009791 213 AMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANY------LKFDVFDLQLGN 279 (525)
Q Consensus 213 ~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~------l~~~i~~l~~~~ 279 (525)
+|-++..+.|.+.+.. ....+-+.++||+|.|||+||+++++. +...++-++++.
T Consensus 131 VGRe~eLeeL~elL~~------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE------------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHH------------CCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhc------------cCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 6777777777766531 012456889999999999999999864 233455555543
No 226
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.94 E-value=0.017 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.3
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+++.|++|+|||||+.++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 227
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.94 E-value=0.003 Score=62.43 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=26.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~ 276 (525)
.-+.|.|+|||||||+++.++ .+|+++++.|
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 357899999999999999999 6888776653
No 228
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.92 E-value=0.0082 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+++.|++|+|||+|+.++.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998643
No 229
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.91 E-value=0.0042 Score=58.31 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
++-+.|.||+|+||||+++.++..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 445789999999999999999998753
No 230
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.90 E-value=0.0038 Score=58.59 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=27.3
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
-+.|.||+|||||++++.+|..||+++++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 57899999999999999999999999985
No 231
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.89 E-value=0.025 Score=60.67 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=32.5
Q ss_pred ceEEEEecCCCC--CCCccccCCCceeeEEEcCCCCHHHHHHHHH
Q 009791 367 ERIIVFTTNHKE--RLDPALLRPGRMDMHIHMSYCGPYGFRLLAA 409 (525)
Q Consensus 367 ~~ivI~TTN~~~--~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~ 409 (525)
++-+|++|.++. .++..+.. -|...|-|...+..+.+.++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 377888999886 57777766 788888999999888887764
No 232
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.89 E-value=0.0034 Score=59.88 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHH
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMA 265 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA 265 (525)
|++...-+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45666679999999999999999998
No 233
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.82 E-value=0.025 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 234
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.81 E-value=0.02 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+++.|++|+|||||+.++.+.-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998643
No 235
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.78 E-value=0.0072 Score=56.56 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34477999999999999999999875
No 236
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.77 E-value=0.0057 Score=56.59 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=22.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||+|+|||||++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4477999999999999999999863
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.76 E-value=0.018 Score=57.33 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=40.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecCCcC----------------------ChhHHHHHHHHhCCCe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLGNVT----------------------RDSDLRTLLLSTGNRS 297 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~~l~----------------------~~~~L~~l~~~~~~~s 297 (525)
++-++|.||+|+||||++..+|..+ |..+..+++.... +...++..+.....+-
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 4568899999999999999999776 4456555543211 1123444555556678
Q ss_pred EEEEe
Q 009791 298 ILVIE 302 (525)
Q Consensus 298 IL~iD 302 (525)
+|+||
T Consensus 185 lvIiD 189 (296)
T 2px0_A 185 HVFVD 189 (296)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88888
No 238
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.75 E-value=0.03 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+++.|++|+|||+|+.++++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45899999999999999999864
No 239
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.75 E-value=0.023 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 240
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.75 E-value=0.008 Score=57.14 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHH----cCCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANY----LKFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~----l~~~i~~l~~~ 278 (525)
|++...-++++|+||+|||+++..+|.. .+.+++.+++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5666777999999999999999877643 25666666554
No 241
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.74 E-value=0.013 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 242
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.71 E-value=0.011 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
No 243
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.68 E-value=0.0053 Score=61.72 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=28.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
+-+++.||+|+|||+|+.++|..++..++..|.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 357889999999999999999999877766553
No 244
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.68 E-value=0.012 Score=51.78 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=18.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~ 266 (525)
-++|.|+||+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378999999999999999864
No 245
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.67 E-value=0.012 Score=61.18 Aligned_cols=40 Identities=23% Similarity=0.142 Sum_probs=28.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---------CCceEEEecCC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---------KFDVFDLQLGN 279 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---------~~~i~~l~~~~ 279 (525)
|++...-++|+||||||||+|+..+|-.. +..++.++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 55666669999999999999999776332 23366666544
No 246
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.66 E-value=0.037 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-++|.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 247
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.65 E-value=0.0086 Score=57.52 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=27.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEecC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLG 278 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~ 278 (525)
.++++||+|+|||.++.+++..++..++.+-..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998887776666433
No 248
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.65 E-value=0.015 Score=54.26 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=40.1
Q ss_pred ceeeEeCCCCCcHH-HHHHHHHHHc--CCceEEEecC-------Cc-------------CChhHHHHHHHHhCCCeEEEE
Q 009791 245 RGYLLYGPPGTGKS-SLVAAMANYL--KFDVFDLQLG-------NV-------------TRDSDLRTLLLSTGNRSILVI 301 (525)
Q Consensus 245 rg~LL~GppGTGKT-sLa~AiA~~l--~~~i~~l~~~-------~l-------------~~~~~L~~l~~~~~~~sIL~i 301 (525)
+=+++|||.|+||| .|++++.++. +..++.+... .+ ....++.. ....-.+|+|
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~---~~~~~DvIlI 97 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQ---EALGVAVIGI 97 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHH---HHHTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHH---hccCCCEEEE
Confidence 34789999999999 9999998865 5666666533 11 11122222 2234569999
Q ss_pred eccccc
Q 009791 302 EDIDCS 307 (525)
Q Consensus 302 DdID~~ 307 (525)
||+.-+
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999976
No 249
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.64 E-value=0.069 Score=46.69 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=19.1
Q ss_pred eeEeCCCCCcHHHHHHHHHHH
Q 009791 247 YLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~ 267 (525)
+++.|++|+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.64 E-value=0.0058 Score=56.15 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=22.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+-+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4577999999999999999998764
No 251
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.62 E-value=0.011 Score=62.30 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=62.6
Q ss_pred HHHHHHhCCCeEEEEeccccccCCCCCCCCCCCCchhhhHhhhhhhhccccccCCCCchhHHHHHHHhhhhcCCCCC---
Q 009791 287 RTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSS--- 363 (525)
Q Consensus 287 ~~l~~~~~~~sIL~iDdID~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~idgl~s~--- 363 (525)
+..+..+.+..||++||||.+.... .+.. .+....-....||..+||-...
T Consensus 242 ~~ai~~ae~~~il~~DEidki~~~~----~~~~----------------------~D~s~egvq~aLL~~le~~~~~~~~ 295 (444)
T 1g41_A 242 QKAIDAVEQNGIVFIDEIDKICKKG----EYSG----------------------ADVSREGVQRDLLPLVEGSTVSTKH 295 (444)
T ss_dssp HHHHHHHHHHCEEEEETGGGGSCCS----SCSS----------------------SHHHHHHHHHHHHHHHHCCEEEETT
T ss_pred HHHHHHhccCCeeeHHHHHHHhhcc----CCCC----------------------CCchHHHHHHHHHHHhccccccccc
Confidence 3344444567899999999986311 0000 0011122456789999874211
Q ss_pred ---CCCceEEEEec----CCCCCCCccccCCCceeeEEEcCCCCHHHHHHHHH
Q 009791 364 ---CGDERIIVFTT----NHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAA 409 (525)
Q Consensus 364 ---~~~~~ivI~TT----N~~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~ 409 (525)
....+++|+|. +.+.++-|.|+. ||+.+|+++..+.+++..|+.
T Consensus 296 ~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 296 GMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred ceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 12457888886 345456688887 999999999999999999984
No 252
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.0037 Score=65.02 Aligned_cols=39 Identities=15% Similarity=-0.049 Sum_probs=33.1
Q ss_pred cCCCCCCCCCCCCCchhhhcchhhhhHhHHHhhhccccc
Q 009791 466 NGSGDVDGDEDEINLDEVAILESKKLKTQDQIQDKGKET 504 (525)
Q Consensus 466 ~~~~~~~~~~~~v~w~dIggl~~vK~~L~e~i~w~~k~~ 504 (525)
........+.|+|+|+||||++++|++|+|.|+||.+..
T Consensus 133 ~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~p 171 (405)
T 4b4t_J 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHP 171 (405)
T ss_dssp CTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCH
T ss_pred hhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCH
Confidence 334455677899999999999999999999999998754
No 253
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.61 E-value=0.015 Score=51.94 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 254
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.60 E-value=0.0086 Score=54.01 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.0
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
++...-+.|.||.|+|||||+++|++.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3444458899999999999999999987
No 255
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.59 E-value=0.0073 Score=60.44 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhC--CCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 217 DLKATIMEDLDRFVRRKEFYKRVG--RAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 217 ~~K~~i~~~l~~fl~~~~~y~~~g--~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.+++.+.+.+...+........+. ...+.-+.|.||.|+||||+++.||..+
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455666666665554321001122 2334458899999999999999999987
No 256
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.59 E-value=0.013 Score=53.17 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=21.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-+++.|++|+|||+|+.++.+.-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998743
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.57 E-value=0.0046 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||+|+|||||++.|++.++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477999999999999999999887
No 258
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.56 E-value=0.023 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--++|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999863
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.55 E-value=0.0064 Score=56.65 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
++-+.|.||+|+|||||++.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45688999999999999999998763
No 260
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.55 E-value=0.031 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--++|.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 261
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.54 E-value=0.0079 Score=60.30 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=27.9
Q ss_pred hCCCCcceeeEeCCCCCcHHHHHHHHHHHcCCce
Q 009791 239 VGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDV 272 (525)
Q Consensus 239 ~g~~~~rg~LL~GppGTGKTsLa~AiA~~l~~~i 272 (525)
+.++.+.-+.|.||+|+|||||++.|++.+.-.+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 3466667799999999999999999999884333
No 262
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.53 E-value=0.0082 Score=55.75 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
|-++|.||+|+|||||++++.....-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45899999999999999999887643
No 263
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.50 E-value=0.019 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.1
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-+++.|++|+|||+|+.++.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998643
No 264
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=95.50 E-value=0.0046 Score=50.17 Aligned_cols=67 Identities=9% Similarity=-0.079 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHhCCcCCCcccHHHHHHHHhhc-CCCHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhcCC
Q 009791 400 GPYGFRLLAANYLGITDCEHKLVAEIETLLKTI-NITPAQVAEQFMK-------SEDADVALAALIKLLKEKERNGS 468 (525)
Q Consensus 400 ~~~~r~~L~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpadi~~~l~~-------~~~~~~al~~l~~al~~~~~~~~ 468 (525)
+.++|.+|++.++...+ .....+++.|+..+ |||+|||.+++.. .....+..++|.++++...+...
T Consensus 2 d~~~R~~Il~~~~~~~~--~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~ 76 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMS--VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 76 (88)
T ss_dssp CSSHHHHHHHHHHTTSC--BCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHCCCC--CCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcc
Confidence 46789999999998663 33345678888887 9999999988753 12233566777788777766543
No 265
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.49 E-value=0.031 Score=59.00 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=43.3
Q ss_pred HHHHHHhhhhcCCCCCCCCceEEEEecCC-------------CCCCCccccCCCceeeEEEcCCCCHHHHHHHHHHHhC
Q 009791 348 LTLSGLLNFIDGLWSSCGDERIIVFTTNH-------------KERLDPALLRPGRMDMHIHMSYCGPYGFRLLAANYLG 413 (525)
Q Consensus 348 ~~ls~LLn~idgl~s~~~~~~ivI~TTN~-------------~~~LDpaLlRpGRfd~~I~~~~p~~~~r~~L~~~~l~ 413 (525)
...+.|+..|+.-. ..+ +|++||. ++.|+|.++. ||.. +.|+.++.++..++++..+.
T Consensus 310 ~a~~aLlk~lEe~~----~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 310 ECFTYLHRALESSI----API-VIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp HHHHHHHHHTTSTT----CCE-EEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccC----CCE-EEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHH
Confidence 46778888887642 234 4544433 7889999999 9976 69999999999999887653
No 266
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.48 E-value=0.043 Score=49.58 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
--++|.|+||+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999998754
No 267
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.47 E-value=0.0098 Score=56.90 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=24.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC--CceEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK--FDVFD 274 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~--~~i~~ 274 (525)
-+.|.||||+||||+++.+++.++ .+++.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 467889999999999999999996 45543
No 268
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.43 E-value=0.0074 Score=58.00 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=25.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l 275 (525)
+-|.||||+||||+++.||..++++.++.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45889999999999999999999876643
No 269
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.43 E-value=0.022 Score=50.48 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=19.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|+||+|||+|+.++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5889999999999999999754
No 270
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.43 E-value=0.0093 Score=65.49 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=29.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEe
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQ 276 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~ 276 (525)
+.-++|.|+||+||||++++++..| |.+++.+|
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 3458899999999999999999999 99999886
No 271
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.42 E-value=0.017 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=21.9
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..-++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
No 272
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.39 E-value=0.012 Score=58.43 Aligned_cols=28 Identities=29% Similarity=0.251 Sum_probs=23.6
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
.+.-+.+.||+|+|||||++.|+..++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3445779999999999999999998863
No 273
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.38 E-value=0.01 Score=62.31 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=27.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
++-+++.||+|+||||++..+|..+ |..+..+++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5668899999999999999999877 555555443
No 274
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.36 E-value=0.0087 Score=56.66 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.7
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.+.-+.|.||+|+|||||++.|++.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34458899999999999999999977
No 275
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.046 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.--+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 276
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.33 E-value=0.0094 Score=55.73 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.1
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
...-+.|.||+|+|||||+++|++.+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 344577999999999999999999874
No 277
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.33 E-value=0.013 Score=54.18 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=29.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEEEecCCc
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV 280 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~~~l 280 (525)
+|++|++|+|||++|..+|.. +.+++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888888887654
No 278
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.32 E-value=0.017 Score=60.67 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=27.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
++-+++.|+||+||||++.++|..+ |..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3568899999999999999999987 355555544
No 279
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.31 E-value=0.023 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+++.|++|+|||||+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 280
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.025 Score=49.75 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 281
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.27 E-value=0.0082 Score=59.33 Aligned_cols=39 Identities=23% Similarity=0.110 Sum_probs=30.0
Q ss_pred hCCCCcceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEec
Q 009791 239 VGRAWKRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQL 277 (525)
Q Consensus 239 ~g~~~~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~ 277 (525)
.|++...-++|.||||+|||+|++.||..+ |..++.++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 356666678999999999999999999876 335555543
No 282
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.26 E-value=0.027 Score=63.54 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=34.7
Q ss_pred CCccccccChHHHHHHHHHHHHHH--HhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHH
Q 009791 207 ATFDTLAMEPDLKATIMEDLDRFV--RRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 207 ~~f~~l~g~~~~K~~i~~~l~~fl--~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.+|+++...+...+.+.+.-..+. ........+ .-...+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l--~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLY--QNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHH--HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 468888887776665544321111 111111111 11345899999999999987777544
No 283
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.21 E-value=0.012 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
++-+.|.||+|+|||||+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999998865
No 284
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.19 E-value=0.024 Score=59.33 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=34.5
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCCCCcce-eeEeCCCCCcHHHHHHHHHHHcC
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRG-YLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg-~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+.+++++....+.+..+.+ + +. .+.| +++.||+|+||||++++|++.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~-l---~~-----------~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRR-L---IK-----------RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHH-H---HT-----------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHH-H---HH-----------hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4578888877655443322 2 11 1334 78999999999999999999885
No 285
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.18 E-value=0.0095 Score=61.88 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=28.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
+.-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3457899999999999999999999877766543
No 286
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.18 E-value=0.03 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-++|.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999865
No 287
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.18 E-value=0.014 Score=58.58 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhC--CCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 218 LKATIMEDLDRFVRRKEFYKRVG--RAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 218 ~K~~i~~~l~~fl~~~~~y~~~g--~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
+++.+.+.+...+.... .+. ...+.-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 79 ~~~~~~~~l~~~l~~~~---~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDT---KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCC---CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCC---CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 44555555555443221 111 2234568899999999999999999876 445554443
No 288
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.16 E-value=0.028 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 289
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.14 E-value=0.01 Score=63.19 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=22.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
+.-++|.||+|+|||||++.||+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3458899999999999999999876
No 290
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.14 E-value=0.01 Score=60.88 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhC--CCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 217 DLKATIMEDLDRFVRRKEFYKRVG--RAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 217 ~~K~~i~~~l~~fl~~~~~y~~~g--~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.+++.+.+.+...+........+. ...+.-+.|.||.|+||||+++.||..+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 345555555555543221001122 2334458899999999999999999986
No 291
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.13 E-value=0.017 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+++.|++|+|||+|+.++.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 292
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.13 E-value=0.0093 Score=56.99 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=27.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
.-+.+.|++|||||++++.+|..+|+++|+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457899999999999999999999999876
No 293
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.12 E-value=0.013 Score=61.63 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhCCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 217 DLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 217 ~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
.+++.+.+.+...+..+...... ...+.-+++.||||+||||++..+|..+ |..+..+++
T Consensus 74 ~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 74 HIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34555555555554431100000 1235678999999999999999999877 556655554
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.12 E-value=0.013 Score=57.25 Aligned_cols=27 Identities=37% Similarity=0.615 Sum_probs=23.0
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
....-++|.||+|+||||++++|++.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 334458899999999999999999876
No 295
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.08 E-value=0.034 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 296
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.03 E-value=0.034 Score=55.69 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=30.8
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
|++...-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 67777779999999999999999998664 3556666544
No 297
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.03 E-value=0.0047 Score=57.57 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.4
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcC
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+.|.||+|+||||+++.++..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999885
No 298
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.02 E-value=0.042 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999853
No 299
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.99 E-value=0.014 Score=55.56 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=23.7
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.+...-+.|.||+|+|||||+++|++.+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34455688999999999999999999875
No 300
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.92 E-value=0.015 Score=53.46 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=23.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCce
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDV 272 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i 272 (525)
.+|+||.|++|+|||+++.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 579999999999999999999874 4443
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.91 E-value=0.013 Score=54.50 Aligned_cols=23 Identities=39% Similarity=0.767 Sum_probs=21.1
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+.|.||+|+|||||++.||..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 36799999999999999999987
No 302
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.89 E-value=0.017 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 303
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.87 E-value=0.02 Score=57.79 Aligned_cols=35 Identities=34% Similarity=0.498 Sum_probs=27.5
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
.++-+++.||+|+||||++..||..+ +..+..+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 35568899999999999999999876 455555544
No 304
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.86 E-value=0.028 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 305
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.82 E-value=0.016 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999853
No 306
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.82 E-value=0.038 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|+||+|||+|+.++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999999854
No 307
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.81 E-value=0.016 Score=55.65 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCce
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDV 272 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i 272 (525)
-+-|.||.|+||||+++.|+..+|...
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~~ 53 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQNE 53 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhc
Confidence 367999999999999999999887543
No 308
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.81 E-value=0.019 Score=59.17 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=24.1
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+....-++|.||+|+||||++++|++.+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34445588999999999999999998763
No 309
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.76 E-value=0.023 Score=62.59 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+++.||||||||+++.+++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999988887765
No 310
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.76 E-value=0.045 Score=62.76 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.7
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHH
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~ 266 (525)
...-++|.||.|+||||+++.+|.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345688999999999999999874
No 311
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.76 E-value=0.028 Score=56.81 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
+.+.-+.|.||+|+||||+++.||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345568899999999999999999877
No 312
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.022 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 313
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.72 E-value=0.018 Score=52.75 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.6
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
...-+.|.||+|+|||||+++++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999999875
No 314
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.70 E-value=0.037 Score=51.05 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-++|.|++|+|||+|+.++.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35899999999999999999754
No 315
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.67 E-value=0.051 Score=49.21 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-++|.|++|+|||+|+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999853
No 316
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.67 E-value=0.023 Score=50.12 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=18.4
Q ss_pred eeEeCCCCCcHHHHHHHHHH
Q 009791 247 YLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~ 266 (525)
+++.|+||+|||+|+.++.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999974
No 317
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.66 E-value=0.033 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-++|.|++|+|||+|+.++.+.-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 358999999999999999998743
No 318
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.65 E-value=0.1 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+++.|++|+|||+|+.++++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 319
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.62 E-value=0.05 Score=49.85 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.9
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
..-+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999854
No 320
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.61 E-value=0.0064 Score=60.47 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=25.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC---CceEEEecCCcC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK---FDVFDLQLGNVT 281 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~~~~l~ 281 (525)
-+.|.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 477999999999999999999876 445556665554
No 321
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.58 E-value=0.02 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 322
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.54 E-value=0.037 Score=55.83 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
-+.|.||+|+||||+++.|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999875
No 323
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.53 E-value=0.13 Score=59.12 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.0
Q ss_pred cceeeEeCCCCCcHHHHHHHHHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~ 266 (525)
.+-++|.||.|+||||+++.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999953
No 324
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.033 Score=50.56 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=22.3
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
...-+++.|++|+|||||+.++++.-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998753
No 325
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.48 E-value=0.028 Score=60.55 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+.-++|.|+||+||||+++.+|.+++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44688999999999999999999984
No 326
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.45 E-value=0.035 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.3
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+.++.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999743
No 327
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.45 E-value=0.011 Score=56.14 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=15.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHH-HHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMA-NYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA-~~l~ 269 (525)
+.-+.|.||+|+||||+++.|+ ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3447799999999999999999 7653
No 328
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.45 E-value=0.098 Score=47.18 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~ 266 (525)
..-+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999999984
No 329
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.45 E-value=0.032 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 330
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.044 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 331
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.36 E-value=0.022 Score=62.06 Aligned_cols=32 Identities=25% Similarity=0.187 Sum_probs=27.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC----CceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK----FDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~----~~i~~l~ 276 (525)
.-++|.|+||+||||++++++..++ .+++.++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 3478999999999999999999986 7777776
No 332
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.36 E-value=0.019 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
-.+|+||.|+|||+++.||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999998775
No 333
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.35 E-value=0.11 Score=58.87 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.+-++|.||.|+||||+++.||..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456889999999999999999875
No 334
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.32 E-value=0.093 Score=47.88 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~ 266 (525)
--+++.|++|+|||+|+.++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999964
No 335
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.29 E-value=0.023 Score=52.52 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
+.+++.+|+|+|||.++...+..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999888777653
No 336
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.28 E-value=0.022 Score=53.84 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEEEec
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL 277 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~l~~ 277 (525)
.+-|+|..||||||+++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 467999999999999999998 9999998774
No 337
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.27 E-value=0.038 Score=66.02 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
++...-+.+.||.|+|||||++.|.+++.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 34455588999999999999999998874
No 338
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.25 E-value=0.11 Score=58.36 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..-++|.||.|+||||+++.+|...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4568899999999999999998753
No 339
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.22 E-value=0.038 Score=58.32 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=30.0
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEec
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQL 277 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~ 277 (525)
|++...-++|.|+||+|||+|+..+|..+ |.++..+++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666669999999999999999998764 456666654
No 340
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.054 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 35899999999999999999863
No 341
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.19 E-value=0.029 Score=56.14 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
+.-+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4458899999999999999999876
No 342
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.16 E-value=0.044 Score=50.00 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=25.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~ 276 (525)
.-+.+.|++|+||||++..++..+ |+.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 357899999999999999999876 45555444
No 343
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.15 E-value=0.029 Score=51.08 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 344
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.018 Score=60.21 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=29.6
Q ss_pred CCCCCCCCchhhhcchhhhhHhHHHhhhccccc
Q 009791 472 DGDEDEINLDEVAILESKKLKTQDQIQDKGKET 504 (525)
Q Consensus 472 ~~~~~~v~w~dIggl~~vK~~L~e~i~w~~k~~ 504 (525)
..+.|+|+|+|||||+++|++|+|.|+||.+..
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~p 205 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHP 205 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCC
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCH
Confidence 456789999999999999999999999997754
No 345
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.12 E-value=0.037 Score=62.63 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+++.||||||||+++.+++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999888887765
No 346
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.10 E-value=0.028 Score=53.16 Aligned_cols=30 Identities=33% Similarity=0.344 Sum_probs=24.6
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC---CceEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK---FDVFDL 275 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~---~~i~~l 275 (525)
-+.|.||+|+||||+++.++..++ ++++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 366889999999999999999884 555544
No 347
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.06 E-value=0.058 Score=57.06 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.5
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-++|+||+|+|||+|++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48899999999999999998765
No 348
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.05 E-value=0.023 Score=56.72 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999876
No 349
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.04 E-value=0.013 Score=56.85 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.|++|+||||+++.||..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3477899999999999999999983
No 350
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.04 E-value=0.019 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=9.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998753
No 351
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.02 E-value=0.051 Score=51.35 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~ 266 (525)
=++|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 388999999999999999875
No 352
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.02 E-value=0.041 Score=57.84 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=30.3
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~ 278 (525)
|++...-++|.|+||+|||+++..+|... +.++..+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56666669999999999999999988654 4566666553
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.01 E-value=0.031 Score=56.05 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||+|+|||||++.|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3467999999999999999999874
No 354
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.029 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-++|.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 355
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.96 E-value=0.1 Score=49.67 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=29.9
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHhHHHHHHhCC---CCcceeeEeCCCCCcHHHH
Q 009791 206 PATFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGR---AWKRGYLLYGPPGTGKSSL 260 (525)
Q Consensus 206 ~~~f~~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~---~~~rg~LL~GppGTGKTsL 260 (525)
..+|+++...+.+.+.+.+. . +..+..++..-+ --.+.+++.+|+|+|||..
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~--g-~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQ--N-FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTT--T-CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--C-CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 35788888777776655431 0 111111111110 1135799999999999976
No 356
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.96 E-value=0.033 Score=59.62 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=27.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
++-+++.|+||+||||++.++|..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568899999999999999999876 566665555
No 357
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.95 E-value=0.031 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+-+.+.|++|+||||+++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3478999999999999999999984
No 358
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.94 E-value=0.025 Score=52.04 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 359
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.90 E-value=0.053 Score=50.16 Aligned_cols=24 Identities=25% Similarity=0.294 Sum_probs=21.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-+++.|++|+|||+|+.++.+.-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998643
No 360
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.86 E-value=0.019 Score=60.91 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
+.-++|.|.||+||||+++.+|..++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 446899999999999999999998753
No 361
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.86 E-value=0.031 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 362
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.86 E-value=0.038 Score=52.84 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=21.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc-------CCceEEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL-------KFDVFDL 275 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l-------~~~i~~l 275 (525)
-+.|.||+|+||||+++.+++.+ |++++..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 36688999999999999999988 6666544
No 363
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.83 E-value=0.029 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.6
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+.|.||+|+|||||++++++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 364
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.83 E-value=0.019 Score=60.54 Aligned_cols=32 Identities=6% Similarity=0.072 Sum_probs=29.0
Q ss_pred CCCCCCCchhhhcchhhhhHhHHHhhhccccc
Q 009791 473 GDEDEINLDEVAILESKKLKTQDQIQDKGKET 504 (525)
Q Consensus 473 ~~~~~v~w~dIggl~~vK~~L~e~i~w~~k~~ 504 (525)
.+.|+|+|+||||++++|++|+|.|+||.+..
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p 232 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSP 232 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCH
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCH
Confidence 46789999999999999999999999997764
No 365
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.82 E-value=0.029 Score=57.28 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFD 271 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~ 271 (525)
..-+.|.||+|+|||||++.|++.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4458899999999999999999987653
No 366
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.81 E-value=0.088 Score=48.37 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.1
Q ss_pred eeeEeCCCCCcHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~ 266 (525)
-+++.|++|+|||+|++++++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999975
No 367
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.76 E-value=0.029 Score=54.07 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.1
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|+|||||+++|++.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677999999999999999998764
No 368
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.76 E-value=0.022 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=22.6
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
...-+.|.||.|+|||||++.|++.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999876
No 369
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.73 E-value=0.023 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||+++|+..+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34578999999999999999998764
No 370
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.70 E-value=0.12 Score=52.55 Aligned_cols=23 Identities=39% Similarity=0.691 Sum_probs=20.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+.|.|+||+|||||+.++++.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999865
No 371
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.66 E-value=0.026 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+.|.||.|+|||||+++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34779999999999999999986
No 372
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.65 E-value=0.029 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.6
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 373
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.62 E-value=0.2 Score=55.71 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=29.0
Q ss_pred CccccccChHHHHHHHHH-HHHHHHh-HHHHHHhCCCCcceeeEeCCCCCcHHHHH
Q 009791 208 TFDTLAMEPDLKATIMED-LDRFVRR-KEFYKRVGRAWKRGYLLYGPPGTGKSSLV 261 (525)
Q Consensus 208 ~f~~l~g~~~~K~~i~~~-l~~fl~~-~~~y~~~g~~~~rg~LL~GppGTGKTsLa 261 (525)
+|+++...+.+++.+.+. +..+... .+.+.. ++.-.+.+++.||.|+|||..+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKS-GILEGKNALISIPTASGKTLIA 56 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTT-TGGGTCEEEEECCGGGCHHHHH
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCccHHHHHH
Confidence 467777776666544331 0000000 111111 1223567999999999999876
No 374
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.57 E-value=0.042 Score=57.74 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=29.8
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecCC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLGN 279 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~~ 279 (525)
.++.+++.|++|+||||++..+|..+ |..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 35678899999999999999999776 66777666553
No 375
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.53 E-value=0.029 Score=53.13 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=22.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|+|||||+++|++.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999998764
No 376
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.51 E-value=0.039 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||||+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 377
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.51 E-value=0.023 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|+|||||+++|++.+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999998764
No 378
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.50 E-value=0.027 Score=60.39 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=23.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
..+.|.|++||||||+++++|..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999985
No 379
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.48 E-value=0.023 Score=59.68 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=30.3
Q ss_pred CCCCCCCCCchhhhcchhhhhHhHHHhhhccccc
Q 009791 471 VDGDEDEINLDEVAILESKKLKTQDQIQDKGKET 504 (525)
Q Consensus 471 ~~~~~~~v~w~dIggl~~vK~~L~e~i~w~~k~~ 504 (525)
...+.|+|+|+||||++++|++|++.|+||.+..
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p 204 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNP 204 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCH
T ss_pred eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCH
Confidence 4456889999999999999999999999998764
No 380
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.41 E-value=0.033 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+.|.|+||+|||||++++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
No 381
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.39 E-value=0.079 Score=55.48 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=27.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
++.+++.||+|+||||++..+|..+ +..+..+++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 4568888999999999999999887 455655554
No 382
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.38 E-value=0.032 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||+++|++.+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33477999999999999999998764
No 383
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.37 E-value=0.032 Score=53.77 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=22.9
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
...-+.|.||.|+|||||+++|++.+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344588999999999999999998763
No 384
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.35 E-value=0.059 Score=54.72 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=30.0
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
|+.+..-++|.|+||+|||+|+..+|..+ +.++..+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56666669999999999999999998774 566665554
No 385
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.35 E-value=0.059 Score=54.88 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=25.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~ 276 (525)
.-+.|.|+||+|||||+.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 458899999999999999999886 55544443
No 386
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.34 E-value=0.042 Score=48.78 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||||+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 387
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.33 E-value=0.033 Score=54.66 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.6
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999774
No 388
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.053 Score=61.40 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=23.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLG 278 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~ 278 (525)
-+|+.||||||||+++..++.++ +..+..+-.+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47899999999999887776554 4455554443
No 389
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.33 E-value=0.03 Score=53.47 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||+++|++.+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34588999999999999999998874
No 390
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.31 E-value=0.061 Score=49.39 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.0
Q ss_pred eeeEeCCCCCcHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~ 266 (525)
-++|.|+||+|||+|+..+++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999964
No 391
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.29 E-value=0.044 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 392
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.28 E-value=0.041 Score=60.36 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=21.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.+-+++.||||||||+++.++...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568999999999999998887655
No 393
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.28 E-value=0.14 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+.|.|+||+|||||+.++++.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999873
No 394
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.22 E-value=0.055 Score=51.32 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=24.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
-+.|.|++|+||||+++.+++.++.++..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~~ 35 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCKL 35 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceE
Confidence 46788999999999999999999875433
No 395
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.22 E-value=0.19 Score=53.33 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=42.5
Q ss_pred CCcce--eeEeCCCCCcHHHH-HHHHHHHcCCceEEEecCCcCChhHHHHHH---HHhC--CCeEEEEeccc
Q 009791 242 AWKRG--YLLYGPPGTGKSSL-VAAMANYLKFDVFDLQLGNVTRDSDLRTLL---LSTG--NRSILVIEDID 305 (525)
Q Consensus 242 ~~~rg--~LL~GppGTGKTsL-a~AiA~~l~~~i~~l~~~~l~~~~~L~~l~---~~~~--~~sIL~iDdID 305 (525)
|..+| .++.|++|||||+| +..|++..+.+++.+-+.--+...++.++. .... .++|+|.--.|
T Consensus 158 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad 229 (502)
T 2qe7_A 158 PIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASAS 229 (502)
T ss_dssp CCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTT
T ss_pred ccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCC
Confidence 34444 89999999999999 679999998886544333223444444444 3322 57888876655
No 396
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.20 E-value=0.046 Score=48.63 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-+++.|++|+|||+|+.++.+.-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999998643
No 397
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.18 E-value=0.032 Score=54.29 Aligned_cols=25 Identities=40% Similarity=0.776 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|+|||||+++|++.+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3477999999999999999998764
No 398
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.17 E-value=0.032 Score=54.43 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.0
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
...-+.|.||.|+|||||+++|++.+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 344588999999999999999998764
No 399
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.16 E-value=0.031 Score=59.97 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=23.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+.++++.||+|+||||+++++++.+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999999884
No 400
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.15 E-value=0.037 Score=54.14 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||+++|++.+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34478999999999999999998764
No 401
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.13 E-value=0.033 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-++|.|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999873
No 402
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.12 E-value=0.044 Score=48.65 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.2
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-.+++||.|+|||+++.||+-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998655
No 403
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.11 E-value=0.054 Score=57.81 Aligned_cols=39 Identities=18% Similarity=-0.036 Sum_probs=29.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc----CCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL----KFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l----~~~i~~l~~~ 278 (525)
|++...-++|.|+||+|||+|+..+|..+ |.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45555569999999999999999998765 4466666543
No 404
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.09 E-value=0.041 Score=53.30 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.8
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+.|.||.|+|||||++.|++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34789999999999999999986
No 405
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.08 E-value=0.032 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|+|||||+++|++.+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3478999999999999999998764
No 406
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.08 E-value=0.038 Score=54.27 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=22.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||++.|++.+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44588999999999999999998774
No 407
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.07 E-value=0.041 Score=48.37 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 408
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.07 E-value=0.052 Score=54.01 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=27.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
++-+++.|++|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4557789999999999999999877 5566655544
No 409
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.035 Score=58.22 Aligned_cols=33 Identities=9% Similarity=0.242 Sum_probs=29.4
Q ss_pred CCCCCCCCchhhhcchhhhhHhHHHhhhccccc
Q 009791 472 DGDEDEINLDEVAILESKKLKTQDQIQDKGKET 504 (525)
Q Consensus 472 ~~~~~~v~w~dIggl~~vK~~L~e~i~w~~k~~ 504 (525)
..+.|+|+|+||||++++|+.|++.|+||.+..
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p 195 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQA 195 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCH
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCH
Confidence 346789999999999999999999999998764
No 410
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.04 E-value=0.037 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|+|||||++.|++.+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3477999999999999999998764
No 411
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.03 E-value=0.044 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..-+.|.||.|+|||||++.|++.+
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999863
No 412
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.03 E-value=0.37 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.1
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+.+.|++|+|||||+.++.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999999973
No 413
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.00 E-value=0.09 Score=53.23 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-+.|.||||+|||||++++++.+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 347799999999999999999876
No 414
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.99 E-value=0.064 Score=56.51 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
|.....-+++.|+||+|||+++..+|... |.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 55555569999999999999999988765 5666666543
No 415
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.98 E-value=0.1 Score=60.66 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.6
Q ss_pred cceeeEeCCCCCcHHHHHHHHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMA 265 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA 265 (525)
.+.++|.||.|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4668899999999999999994
No 416
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.96 E-value=0.036 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||++.|++.+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998764
No 417
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.95 E-value=0.046 Score=49.25 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-++|.|++|+|||||++++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999873
No 418
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.94 E-value=0.1 Score=47.69 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
--++|.|++|+|||+|++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999888743
No 419
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.94 E-value=0.033 Score=54.06 Aligned_cols=26 Identities=42% Similarity=0.501 Sum_probs=22.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
.-+.|.||.|+|||||++.|++.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34789999999999999999987754
No 420
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.92 E-value=0.042 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||+++|++.+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34478999999999999999998764
No 421
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.89 E-value=0.037 Score=58.08 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=30.0
Q ss_pred CCCCCCCCCchhhhcchhhhhHhHHHhhhccccc
Q 009791 471 VDGDEDEINLDEVAILESKKLKTQDQIQDKGKET 504 (525)
Q Consensus 471 ~~~~~~~v~w~dIggl~~vK~~L~e~i~w~~k~~ 504 (525)
...+.|+|+|+||||++++|++|++.|+||.+..
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~p 204 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRA 204 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCS
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCH
Confidence 3456789999999999999999999999998754
No 422
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.88 E-value=0.04 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||+|+||||+++.++..++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999883
No 423
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.88 E-value=0.046 Score=55.88 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|||||||+++||+.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3477999999999999999998764
No 424
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.88 E-value=0.094 Score=62.68 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=23.2
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
++..-+-|.||.|+|||||++++.+.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 444558899999999999999999876
No 425
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.87 E-value=0.041 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.693 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|+|||||++.|++.+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3478999999999999999998764
No 426
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.84 E-value=0.055 Score=47.65 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999763
No 427
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.83 E-value=0.03 Score=57.28 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=23.2
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
...-++|.||.|+|||||+++|++.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345688999999999999999998764
No 428
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.79 E-value=0.087 Score=55.39 Aligned_cols=29 Identities=38% Similarity=0.581 Sum_probs=24.8
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
.-+.|.||+|||||||++.||+....+.-
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 34789999999999999999999876543
No 429
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.78 E-value=0.051 Score=55.68 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|||||||+++||+.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3477999999999999999998764
No 430
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.76 E-value=0.044 Score=56.12 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|||||||+++||+...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3477999999999999999998763
No 431
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.70 E-value=0.039 Score=59.76 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.|++|+|||||+++||..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 3478999999999999999999885
No 432
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.69 E-value=0.053 Score=55.53 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|||||||++.||+.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3477999999999999999998764
No 433
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.69 E-value=0.046 Score=53.43 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||++.|++.+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34478999999999999999998764
No 434
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.68 E-value=0.041 Score=55.61 Aligned_cols=26 Identities=15% Similarity=0.575 Sum_probs=23.1
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
...+++.||+|+|||||+++|++.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34689999999999999999999874
No 435
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.66 E-value=0.042 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||++.|++.+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33478999999999999999998764
No 436
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.64 E-value=0.055 Score=55.69 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=22.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|||||||+++||+.+.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3477999999999999999998764
No 437
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.64 E-value=0.052 Score=55.88 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|||||||++.||+.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3477999999999999999998763
No 438
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.63 E-value=0.055 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|||||||+++||+...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3477999999999999999998774
No 439
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.62 E-value=0.041 Score=53.84 Aligned_cols=26 Identities=35% Similarity=0.632 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||+++|++.+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34477999999999999999998764
No 440
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.61 E-value=0.055 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.7
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
..-+++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999763
No 441
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.60 E-value=0.093 Score=50.24 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=25.1
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc--CCceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL--KFDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l--~~~i~~l~ 276 (525)
..+++.|.+|+||||++..+|..+ |..+..++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 347788999999999999999776 55554444
No 442
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.57 E-value=0.047 Score=58.69 Aligned_cols=29 Identities=31% Similarity=0.310 Sum_probs=24.9
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
|++...-++|.||||+|||+|++.+|..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55666669999999999999999999765
No 443
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.56 E-value=0.034 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.+.|.||+|+|||||++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 577999999999999999999874
No 444
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.47 E-value=0.17 Score=53.81 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=40.6
Q ss_pred eeEeCCCCCcHHHH-HHHHHHHcCCceEEEecCCcCChhHHHHHHHHh---C--CCeEEEEeccc
Q 009791 247 YLLYGPPGTGKSSL-VAAMANYLKFDVFDLQLGNVTRDSDLRTLLLST---G--NRSILVIEDID 305 (525)
Q Consensus 247 ~LL~GppGTGKTsL-a~AiA~~l~~~i~~l~~~~l~~~~~L~~l~~~~---~--~~sIL~iDdID 305 (525)
.++.|++|||||+| +..|++..+.+++.+-+.--+...++.++.... . ..+|+|.--.|
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad 242 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASAS 242 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTT
T ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCC
Confidence 89999999999999 679999998886544333223444444444333 2 46788876655
No 445
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.44 E-value=0.045 Score=53.54 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=21.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..-+.|.||.|+|||||++.|++.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999865
No 446
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.42 E-value=0.13 Score=49.79 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+.|.|+||+|||||+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999865
No 447
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.37 E-value=0.048 Score=55.58 Aligned_cols=25 Identities=24% Similarity=0.616 Sum_probs=22.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|||||||++.||+...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 3477999999999999999998764
No 448
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.36 E-value=0.021 Score=53.15 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~ 266 (525)
--++|.|++|+|||+|+.++.+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999884
No 449
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.35 E-value=0.051 Score=58.44 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=27.7
Q ss_pred CCCCcceeeEeCCCCCcHHHHHHH--HHHHc--CCceEEEecC
Q 009791 240 GRAWKRGYLLYGPPGTGKSSLVAA--MANYL--KFDVFDLQLG 278 (525)
Q Consensus 240 g~~~~rg~LL~GppGTGKTsLa~A--iA~~l--~~~i~~l~~~ 278 (525)
+++...-++|.||+|+|||||++. ++..+ +-..+.++..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 455666799999999999999999 45544 3334445443
No 450
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.32 E-value=0.085 Score=53.70 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.1
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
-+.|.||+|+|||||++.|++....+...
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~~g~ 101 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASADIIV 101 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCEEE
Confidence 48899999999999999999998766543
No 451
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.30 E-value=0.053 Score=48.67 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.0
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+.|.|+||+|||||++++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 452
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.30 E-value=0.07 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-++|.|++|+|||+|+.++.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 453
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.29 E-value=0.065 Score=47.57 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=19.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~ 266 (525)
--+++.|++|+|||+|+.++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 454
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.24 E-value=0.027 Score=53.89 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcC
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+.|.||.|+|||||+++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 35789999999999999999874
No 455
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.21 E-value=0.061 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||+|+.++++.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999874
No 456
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.17 E-value=0.052 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 457
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.17 E-value=0.063 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+++.|++|+|||||+.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998864
No 458
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.16 E-value=0.074 Score=50.72 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=24.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCC----ceEE
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKF----DVFD 274 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~----~i~~ 274 (525)
.-+.|.|++|+||||+++.+++.++. +++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 34668899999999999999998754 5554
No 459
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.16 E-value=0.075 Score=47.46 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999853
No 460
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.99 E-value=0.054 Score=48.71 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHH
Q 009791 247 YLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~ 267 (525)
+++.|++|+|||||+.++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999864
No 461
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.99 E-value=0.069 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.0
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+.|.|++|+||||.++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999988
No 462
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.97 E-value=0.22 Score=49.50 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=21.2
Q ss_pred CCcce-eeEeCCCCCcHHHHHHHHHHH
Q 009791 242 AWKRG-YLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 242 ~~~rg-~LL~GppGTGKTsLa~AiA~~ 267 (525)
+++.| +.+.|.||+|||||+.++.+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34455 568999999999999999864
No 463
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.97 E-value=0.081 Score=47.12 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.3
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 464
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.93 E-value=0.083 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.9
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-++|.|++|+|||+|+.++.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999999864
No 465
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.88 E-value=0.047 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||.|||||||++.||+...
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3477999999999999999998763
No 466
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.87 E-value=0.084 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-+++.|++|+|||+|+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998753
No 467
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.78 E-value=0.089 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988764
No 468
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.78 E-value=0.073 Score=48.51 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.7
Q ss_pred eeeEeCCCCCcHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~ 266 (525)
-+++.|+||+|||+|++++++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 469
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.78 E-value=0.066 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.0
Q ss_pred eeeEeCCCCCcHHHHHHHHHHH
Q 009791 246 GYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~ 267 (525)
-+++.|++|+|||+|+..+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 470
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.77 E-value=0.036 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
..-+.|.|++|+|||||++++++.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 334889999999999999998754
No 471
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.75 E-value=0.052 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+.|.||.|+|||||++.|++.+.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 33488999999999999999998763
No 472
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.73 E-value=0.095 Score=52.56 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=24.2
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
.+|+||.|++|+|||+++.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 578999999999999999999875 54443
No 473
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.73 E-value=0.088 Score=48.38 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+++.|++|+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999854
No 474
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.71 E-value=0.066 Score=54.78 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||+|+|||||+++|+..+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3578999999999999999997654
No 475
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.69 E-value=0.078 Score=56.11 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCcceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 241 RAWKRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 241 ~~~~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
+....-+.|.||.|+|||||++.||+.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3444458899999999999999999987
No 476
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.68 E-value=0.16 Score=50.40 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=26.3
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEec
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQL 277 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~ 277 (525)
++.+.+.|++|+||||++..+|..+ +..+..+++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4557788999999999999999876 445555443
No 477
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.67 E-value=0.091 Score=47.71 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
--++|.|++|+|||+|+.++.+.-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 478
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.64 E-value=0.068 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=18.9
Q ss_pred eeeEeCCCCCcHHHHHHH-HHHH
Q 009791 246 GYLLYGPPGTGKSSLVAA-MANY 267 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~A-iA~~ 267 (525)
-+++.|++|+|||||+.+ +.+.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999999 5444
No 479
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.64 E-value=0.067 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+.|.|+||+|||||+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999865
No 480
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.63 E-value=0.09 Score=55.03 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.6
Q ss_pred eeEeCCCCCcHHHHHHHHHHH
Q 009791 247 YLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~ 267 (525)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 679999999999999999986
No 481
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.62 E-value=0.11 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-+++.|++|+|||||+..++..+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457888999999999999999876
No 482
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.58 E-value=0.07 Score=53.02 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.0
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
.-+.|.||+|+|||||+++|+.....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 34779999999999999999986643
No 483
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.58 E-value=0.066 Score=48.22 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 484
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.55 E-value=0.072 Score=47.89 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=20.9
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHH
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
..-+++.|++|+|||+|+.++.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999854
No 485
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.54 E-value=0.065 Score=55.49 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.9
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
..-+.|.||.|||||||+++||..+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4458899999999999999999865
No 486
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.53 E-value=0.13 Score=55.52 Aligned_cols=32 Identities=31% Similarity=0.331 Sum_probs=25.8
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC---CceEEEe
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK---FDVFDLQ 276 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~---~~i~~l~ 276 (525)
.-++|.|+||+||||++++++..++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4578999999999999999999874 4555554
No 487
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.49 E-value=0.15 Score=47.79 Aligned_cols=29 Identities=28% Similarity=0.572 Sum_probs=24.0
Q ss_pred eeEeCCCCCcHHHHHHHHHHHc--CCceEEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYL--KFDVFDL 275 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l--~~~i~~l 275 (525)
+.|-|+.|+||||.++.++..| +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 5688999999999999999998 4555543
No 488
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.47 E-value=0.083 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.8
Q ss_pred ceeeEeCCCCCcHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMAN 266 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~ 266 (525)
.-++|.|++|+|||+|+.++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999985
No 489
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.45 E-value=0.087 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.1
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHc
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l 268 (525)
.-++|.|++|+|||||+.++.+.-
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 458999999999999999998643
No 490
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.42 E-value=0.18 Score=51.71 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=27.8
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHc---CCceEEEecC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYL---KFDVFDLQLG 278 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l---~~~i~~l~~~ 278 (525)
...+++.||+|+|||++++.++..+ +..++.+|..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3468999999999999999998764 5666666654
No 491
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.28 E-value=0.062 Score=53.76 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=23.7
Q ss_pred CCcceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 242 AWKRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 242 ~~~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
+...-+.|.||.|+|||||++.|++.+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3445588999999999999999998774
No 492
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.22 E-value=0.11 Score=48.45 Aligned_cols=25 Identities=40% Similarity=0.487 Sum_probs=21.8
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHcCC
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYLKF 270 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l~~ 270 (525)
-.+|+||.|+|||+++.||.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999999999877754
No 493
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.21 E-value=0.081 Score=53.00 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=24.1
Q ss_pred CcceeeEeCCCCCcHHHHHHHHHHHcCCceE
Q 009791 243 WKRGYLLYGPPGTGKSSLVAAMANYLKFDVF 273 (525)
Q Consensus 243 ~~rg~LL~GppGTGKTsLa~AiA~~l~~~i~ 273 (525)
..+|+||.|++|+|||+++.++.. -|..++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 357899999999999999999865 455444
No 494
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.16 E-value=0.12 Score=49.01 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=22.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHHcCCceEE
Q 009791 247 YLLYGPPGTGKSSLVAAMANYLKFDVFD 274 (525)
Q Consensus 247 ~LL~GppGTGKTsLa~AiA~~l~~~i~~ 274 (525)
+.|.||.|+||||+++.|++. +..++.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 668899999999999999987 444443
No 495
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.11 E-value=0.18 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred eeeEeCCCCCcHHHHHHHHHHHc
Q 009791 246 GYLLYGPPGTGKSSLVAAMANYL 268 (525)
Q Consensus 246 g~LL~GppGTGKTsLa~AiA~~l 268 (525)
-+.|.||+|+|||||+++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46699999999999999999854
No 496
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.02 E-value=0.095 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 244 KRGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 244 ~rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
..-+-|.||.|+|||||+++|+..+.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 34478999999999999999998764
No 497
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.00 E-value=0.16 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.1
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
.-++|.|+||+|||+|+.++.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998754
No 498
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.96 E-value=0.33 Score=51.66 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=37.3
Q ss_pred eeEeCCCCCcHHHH-HHHHHHHcC--------CceEEEecCCcCChhHHHHHH---HHhC--CCeEEEEeccc
Q 009791 247 YLLYGPPGTGKSSL-VAAMANYLK--------FDVFDLQLGNVTRDSDLRTLL---LSTG--NRSILVIEDID 305 (525)
Q Consensus 247 ~LL~GppGTGKTsL-a~AiA~~l~--------~~i~~l~~~~l~~~~~L~~l~---~~~~--~~sIL~iDdID 305 (525)
.++.|++|||||+| +..|++..+ .+++.+-+.--+...++.++. .... ..+|+|.--.|
T Consensus 165 ~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad 237 (510)
T 2ck3_A 165 ELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATAS 237 (510)
T ss_dssp CEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTT
T ss_pred EEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCC
Confidence 89999999999999 678888775 454433322222344444443 3322 46788876555
No 499
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.95 E-value=0.098 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.7
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHH
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANY 267 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~ 267 (525)
--+++.|++|+|||+|+.++++.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 500
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.93 E-value=0.11 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.6
Q ss_pred ceeeEeCCCCCcHHHHHHHHHHHcC
Q 009791 245 RGYLLYGPPGTGKSSLVAAMANYLK 269 (525)
Q Consensus 245 rg~LL~GppGTGKTsLa~AiA~~l~ 269 (525)
.-+.|.||+|+|||||+++|+ .+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 347799999999999999999 654
Done!