BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009792
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OAU|A Chain A, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|B Chain B, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|C Chain C, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|D Chain D, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|E Chain E, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|F Chain F, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|G Chain G, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|4HWA|A Chain A, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|B Chain B, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|C Chain C, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|D Chain D, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|E Chain E, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|F Chain F, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|G Chain G, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
Length = 306
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
+ R +N R M S+ I + + AL R G+ L+A GV S++ V
Sbjct: 63 IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 119
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
G G+A A + L N+ +G+ + +PF G+ + G V G V+ + + +TT+ +A+
Sbjct: 120 LGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 179
Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
+++PN + I+N SR P R I + D D+D+V QI + ++++S ++
Sbjct: 180 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 236
Query: 480 LGKE 483
+E
Sbjct: 237 KDRE 240
>pdb|4AGE|A Chain A, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|B Chain B, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|C Chain C, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|D Chain D, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|E Chain E, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|F Chain F, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|G Chain G, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
Length = 286
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 7/184 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
+ R +N R M S+ I D L + G+ L+A GV S++ V
Sbjct: 43 IIARMISNAVNRLMISRKI---DATVACFLSALVRYGIIAFTLIAALGRVGVQTASVIAV 99
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
G G+A A + L N+ +G+ + +PF G+ + G V G V+ + + +TT+ +A+
Sbjct: 100 LGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159
Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
+++PN + I+N SR P R I + D D+D+V QI + ++++S ++
Sbjct: 160 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 216
Query: 480 LGKE 483
+E
Sbjct: 217 KDRE 220
>pdb|4AGF|A Chain A, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|B Chain B, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|C Chain C, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|D Chain D, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|E Chain E, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|F Chain F, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|G Chain G, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
Length = 286
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
+ R +N R M S+ I + + AL R G+ L+A GV S++ V
Sbjct: 43 IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 99
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
G G+A A + L N+ +G+ +PF G+ + G V G V+ + + +TT+ +A+
Sbjct: 100 LGAAGLAVGLALQGSLSNLAAGVLCVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159
Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
+++PN + I+N SR P R I + D D+D+V QI + ++++S ++
Sbjct: 160 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 216
Query: 480 LGKE 483
+E
Sbjct: 217 KDRE 220
>pdb|2VV5|A Chain A, The Open Structure Of Mscs
pdb|2VV5|B Chain B, The Open Structure Of Mscs
pdb|2VV5|C Chain C, The Open Structure Of Mscs
pdb|2VV5|D Chain D, The Open Structure Of Mscs
pdb|2VV5|E Chain E, The Open Structure Of Mscs
pdb|2VV5|F Chain F, The Open Structure Of Mscs
pdb|2VV5|G Chain G, The Open Structure Of Mscs
Length = 286
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
+ R +N R M S+ I + + AL R G+ L+A GV S++ V
Sbjct: 43 IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 99
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
G G+ A + L N+ +G+ + +PF G+ + G V G V+ + + +TT+ +A+
Sbjct: 100 LGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159
Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
+++PN + I+N SR P R I + D D+D+V QI + ++++S ++
Sbjct: 160 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 216
Query: 480 LGKE 483
+E
Sbjct: 217 KDRE 220
>pdb|3UDC|A Chain A, Crystal Structure Of A Membrane Protein
pdb|3UDC|B Chain B, Crystal Structure Of A Membrane Protein
pdb|3UDC|C Chain C, Crystal Structure Of A Membrane Protein
pdb|3UDC|D Chain D, Crystal Structure Of A Membrane Protein
pdb|3UDC|E Chain E, Crystal Structure Of A Membrane Protein
pdb|3UDC|F Chain F, Crystal Structure Of A Membrane Protein
pdb|3UDC|G Chain G, Crystal Structure Of A Membrane Protein
Length = 285
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 352 VAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGL 411
+ + S+L V GIG +A F +++++ +++SG + F FS+GD + + G V E+GL
Sbjct: 90 IDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISGTVEEIGL 149
Query: 412 TTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKV----PQISD 466
T + I+PN +++ N ++ A V+ I ID D+DK+ +I +
Sbjct: 150 RVTKIRGFSDGLHIIPNG--EIKMVTNLTKDSMMA-VVNIAFPIDEDVDKIIEGLQEICE 206
Query: 467 DVKS 470
+VK
Sbjct: 207 EVKK 210
>pdb|3T9N|A Chain A, Crystal Structure Of A Membrane Protein
pdb|3T9N|B Chain B, Crystal Structure Of A Membrane Protein
pdb|3T9N|C Chain C, Crystal Structure Of A Membrane Protein
pdb|3T9N|D Chain D, Crystal Structure Of A Membrane Protein
pdb|3T9N|E Chain E, Crystal Structure Of A Membrane Protein
pdb|3T9N|F Chain F, Crystal Structure Of A Membrane Protein
pdb|3T9N|G Chain G, Crystal Structure Of A Membrane Protein
Length = 282
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 352 VAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGL 411
+ + S+L V GIG +A F +++++ +++SG + F FS+GD + + G V E+GL
Sbjct: 90 IDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISGTVEEIGL 149
Query: 412 TTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKV----PQISD 466
T + I+PN +++ N ++ A V+ I ID D+DK+ +I +
Sbjct: 150 RVTKIRGFSDGLHIIPNG--EIKMVTNLTKDSMMA-VVNIAFPIDEDVDKIIEGLQEICE 206
Query: 467 DVKS 470
+VK
Sbjct: 207 EVKK 210
>pdb|4HW9|A Chain A, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|B Chain B, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|C Chain C, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|D Chain D, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|E Chain E, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|F Chain F, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
pdb|4HW9|G Chain G, Crystal Structure Of Helicobacter Pylori Mscs (closed
State)
Length = 309
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 351 GVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMG 410
GV SI+TV G G+A A A +D L ++ G+ + PF GD I+ +EG+V +
Sbjct: 103 GVQTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALN 162
Query: 411 LTTTTLLSAEKFPVIVPN 428
T+L + ++PN
Sbjct: 163 FFNTSLRLHDGRLAVLPN 180
>pdb|2JUH|A Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1
Length = 121
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 141 SGSETDVSNHGIVGSD--SFDKIKDAWKSVVDGVSYTGQKAKDELSPQ--IEQLLDAHPY 196
+G DV +D ++ +KD WK++V S Q+ + E PQ ++++L AH Y
Sbjct: 37 TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 96
>pdb|2QHB|A Chain A, Crystal Structure Of Ngtrf Complexed With Telomeric Dna
pdb|2QHB|B Chain B, Crystal Structure Of Ngtrf Complexed With Telomeric Dna
Length = 86
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 141 SGSETDVSNHGIVGSD--SFDKIKDAWKSVVDGVSYTGQKAKDELSPQ--IEQLLDAHPY 196
+G DV +D ++ +KD WK++V S Q+ + E PQ ++++L AH Y
Sbjct: 24 TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 83
>pdb|2CKX|A Chain A, Crystal Structure Of Ngtrf1, Double-Stranded Telomeric
Repeat Binding Factor From Nicotiana Tabacum
Length = 83
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 141 SGSETDVSNHGIVGSD--SFDKIKDAWKSVVDGVSYTGQKAKDELSPQ--IEQLLDAHPY 196
+G DV +D ++ +KD WK++V S Q+ + E PQ ++++L AH Y
Sbjct: 20 TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 409 MGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDV 468
+G+ ++ + + + +++ N MFS ++ V++ +LV R + + ++P + D
Sbjct: 157 LGMYRVSVDNEDSYMLVMRN-MFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRD-- 213
Query: 469 KSMLRSNTKVFLGKEAPYCFLSQIE 493
L N KV++G+E FL +++
Sbjct: 214 MDFLNKNQKVYIGEEEKKIFLEKLK 238
>pdb|3KJO|A Chain A, Crystal Structure Of Hpot1v2-Dtrud(Agggttag)
pdb|3KJP|A Chain A, Crystal Structure Of Hpot1v2-Ggttagggttag
Length = 299
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYD 56
FKP L Y + +Q +VKL+C + + NY+
Sbjct: 32 FKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYE 67
>pdb|1XJV|A Chain A, Crystal Structure Of Human Pot1 Bound To Telomeric
Single- Stranded Dna (Ttagggttag)
Length = 294
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYD 56
FKP L Y + +Q +VKL+C + + NY+
Sbjct: 27 FKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYE 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,783,997
Number of Sequences: 62578
Number of extensions: 529174
Number of successful extensions: 1313
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 13
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)