Query 009792
Match_columns 525
No_of_seqs 290 out of 2070
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 17:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10334 mechanosensitive chan 100.0 4.7E-40 1E-44 334.4 29.1 223 283-512 25-248 (286)
2 PRK11465 putative mechanosensi 100.0 2.8E-36 6.2E-41 335.3 36.8 267 242-513 416-696 (741)
3 PRK10929 putative mechanosensi 100.0 9.9E-35 2.1E-39 335.2 36.7 219 285-509 832-1052(1109)
4 PRK11281 hypothetical protein; 100.0 1.3E-34 2.8E-39 335.4 37.3 219 285-509 835-1055(1113)
5 PF00924 MS_channel: Mechanose 100.0 6.7E-33 1.5E-37 267.7 17.3 184 332-516 2-187 (206)
6 COG3264 Small-conductance mech 100.0 3.6E-31 7.8E-36 292.6 31.6 222 286-513 558-781 (835)
7 COG0668 MscS Small-conductance 100.0 4.9E-30 1.1E-34 261.9 31.9 181 329-512 86-268 (316)
8 KOG4629 Predicted mechanosensi 99.7 1.2E-16 2.6E-21 177.7 10.7 193 323-517 476-671 (714)
9 PF05552 TM_helix: Conserved T 87.8 1 2.2E-05 34.4 4.4 37 283-319 12-48 (53)
10 PF12794 MscS_TM: Mechanosensi 86.3 45 0.00099 35.2 17.4 77 289-369 84-166 (340)
11 PRK11281 hypothetical protein; 84.4 88 0.0019 38.4 20.4 28 323-350 612-639 (1113)
12 PRK05585 yajC preprotein trans 78.0 5.1 0.00011 35.3 5.4 42 391-432 53-95 (106)
13 TIGR00739 yajC preprotein tran 77.4 6 0.00013 33.4 5.5 37 391-427 38-75 (84)
14 PRK11465 putative mechanosensi 75.6 1.2E+02 0.0025 35.7 16.9 62 170-231 97-168 (741)
15 PF09953 DUF2187: Uncharacteri 68.2 7.4 0.00016 30.5 3.5 27 391-417 4-31 (57)
16 PRK05886 yajC preprotein trans 64.7 16 0.00034 32.4 5.4 36 391-426 39-75 (109)
17 COG4873 Uncharacterized protei 63.7 7.1 0.00015 31.5 2.7 28 389-416 22-50 (81)
18 PRK10334 mechanosensitive chan 62.8 1.9E+02 0.0041 29.8 17.1 33 197-229 24-56 (286)
19 PF12794 MscS_TM: Mechanosensi 62.2 2.1E+02 0.0046 30.2 17.6 113 239-357 108-224 (340)
20 smart00739 KOW KOW (Kyprides, 60.7 12 0.00025 24.0 3.0 21 390-410 1-26 (28)
21 COG1862 YajC Preprotein transl 57.5 24 0.00052 30.7 5.2 42 391-432 44-86 (97)
22 PF02699 YajC: Preprotein tran 54.9 4 8.7E-05 34.2 0.0 38 390-427 36-74 (82)
23 PRK06531 yajC preprotein trans 54.6 28 0.0006 31.1 5.2 40 391-431 37-79 (113)
24 PF14348 DUF4400: Domain of un 50.3 2.4E+02 0.0051 27.2 11.5 79 297-378 118-196 (198)
25 cd04466 S1_YloQ_GTPase S1_YloQ 46.5 25 0.00055 27.4 3.4 29 389-417 36-67 (68)
26 PF02559 CarD_CdnL_TRCF: CarD- 46.1 59 0.0013 27.6 5.9 44 390-433 1-53 (98)
27 PF14801 GCD14_N: tRNA methylt 42.6 13 0.00028 28.8 1.1 22 388-409 3-24 (54)
28 COG1030 NfeD Membrane-bound se 42.0 2E+02 0.0044 31.5 10.3 30 244-273 219-249 (436)
29 PF00467 KOW: KOW motif; Inte 39.4 43 0.00094 22.7 3.2 19 393-411 1-24 (32)
30 PRK10929 putative mechanosensi 38.9 8.6E+02 0.019 30.2 19.4 71 239-309 581-654 (1109)
31 COG4956 Integral membrane prot 38.2 5.1E+02 0.011 27.4 12.4 21 285-305 109-129 (356)
32 PF05552 TM_helix: Conserved T 37.9 88 0.0019 23.6 5.1 30 202-231 16-45 (53)
33 PRK13692 (3R)-hydroxyacyl-ACP 37.9 1.3E+02 0.0027 28.2 7.2 19 383-401 89-107 (159)
34 PRK00409 recombination and DNA 37.9 1.1E+02 0.0024 36.2 8.2 43 389-432 635-680 (782)
35 PRK13889 conjugal transfer rel 36.8 44 0.00096 40.4 4.8 43 389-431 599-651 (988)
36 cd03454 YdeM YdeM is a Bacillu 35.8 1.1E+02 0.0023 27.3 6.3 41 384-424 82-130 (140)
37 PRK08559 nusG transcription an 34.3 87 0.0019 29.1 5.5 43 389-431 93-145 (153)
38 PF02934 GatB_N: GatB/GatE cat 33.0 1.1E+02 0.0024 31.7 6.4 99 377-477 81-180 (289)
39 TIGR02768 TraA_Ti Ti-type conj 32.5 59 0.0013 38.1 4.9 43 389-431 606-658 (744)
40 PF07243 Phlebovirus_G1: Phleb 31.8 2.4E+02 0.0053 31.7 9.1 13 254-266 452-464 (526)
41 COG1033 Predicted exporters of 31.8 9.2E+02 0.02 28.5 16.8 20 457-477 448-467 (727)
42 PF08566 Pam17: Mitochondrial 31.3 1.6E+02 0.0034 28.4 6.6 33 349-381 71-103 (173)
43 TIGR00527 gcvH glycine cleavag 30.3 1.4E+02 0.003 27.0 5.9 70 392-464 45-114 (127)
44 TIGR00405 L26e_arch ribosomal 28.2 1.3E+02 0.0028 27.5 5.4 43 389-431 85-137 (145)
45 cd03455 SAV4209 SAV4209 is a S 26.9 1.7E+02 0.0037 25.5 5.9 45 380-424 69-115 (123)
46 cd03451 FkbR2 FkbR2 is a Strep 26.8 1.5E+02 0.0032 26.4 5.6 18 384-401 85-102 (146)
47 PRK13892 conjugal transfer pro 26.8 2.9E+02 0.0063 25.4 7.2 66 244-309 42-110 (134)
48 COG4858 Uncharacterized membra 26.7 6.2E+02 0.013 24.9 12.7 24 182-205 109-132 (226)
49 PF11188 DUF2975: Protein of u 26.5 4.3E+02 0.0094 23.0 14.0 21 246-266 54-74 (136)
50 PF12961 DUF3850: Domain of Un 25.7 89 0.0019 25.7 3.4 28 386-413 24-56 (72)
51 PF13452 MaoC_dehydrat_N: N-te 25.7 1.2E+02 0.0026 26.6 4.7 51 374-424 71-129 (132)
52 cd03441 R_hydratase_like (R)-h 25.6 2.3E+02 0.0049 24.1 6.4 46 379-424 69-119 (127)
53 PF09926 DUF2158: Uncharacteri 25.3 63 0.0014 24.9 2.4 22 391-412 1-24 (53)
54 PRK01202 glycine cleavage syst 25.2 1.6E+02 0.0036 26.5 5.5 56 386-442 41-96 (127)
55 PF13726 Na_H_antiport_2: Na+- 25.2 1E+02 0.0022 26.4 3.8 45 339-383 5-50 (88)
56 COG1377 FlhB Flagellar biosynt 25.0 8.9E+02 0.019 26.1 18.0 45 423-477 257-310 (363)
57 cd03453 SAV4209_like SAV4209_l 24.7 3.2E+02 0.007 23.9 7.3 20 382-401 72-91 (127)
58 cd01854 YjeQ_engC YjeQ/EngC. 23.2 1.1E+02 0.0024 31.3 4.5 33 388-420 32-67 (287)
59 PRK12281 rplX 50S ribosomal pr 23.1 91 0.002 25.8 3.0 23 390-412 6-33 (76)
60 cd03452 MaoC_C MaoC_C The C-t 22.8 1.6E+02 0.0036 26.5 5.1 18 384-401 82-99 (142)
61 cd03701 IF2_IF5B_II IF2_IF5B_I 21.8 95 0.0021 26.5 3.1 23 385-407 21-43 (95)
62 TIGR01080 rplX_A_E ribosomal p 21.6 1.5E+02 0.0033 26.5 4.3 21 390-410 41-66 (114)
63 PF10842 DUF2642: Protein of u 21.4 2.4E+02 0.0053 22.8 5.1 39 393-432 20-62 (66)
64 smart00538 POP4 A domain found 21.4 1.7E+02 0.0038 25.0 4.6 30 401-430 28-57 (92)
65 PF11449 DUF2899: Protein of u 21.1 7.8E+02 0.017 25.8 10.0 44 326-369 178-225 (298)
66 PF14221 DUF4330: Domain of un 21.1 1.1E+02 0.0024 29.0 3.7 39 391-429 72-117 (168)
67 PF06107 DUF951: Bacterial pro 20.5 2.1E+02 0.0046 22.5 4.4 41 391-432 2-49 (57)
No 1
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=100.00 E-value=4.7e-40 Score=334.42 Aligned_cols=223 Identities=23% Similarity=0.329 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Q 009792 283 SQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG 362 (525)
Q Consensus 283 ~~~l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lG 362 (525)
..+.++++.+++++.++|++.+++.+++.+.+.++.. +......+.++++++++++++++++..+|++.+++++++|
T Consensus 25 ~~~~~~i~~al~il~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G 101 (286)
T PRK10334 25 LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKI---DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLG 101 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3467788999999999999999999999887755433 5667778999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCC
Q 009792 363 IGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRA 442 (525)
Q Consensus 363 i~gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~ 442 (525)
++|+|+|||+||+++|++||++|+++|||++||||+++|.+|+|++|++|+|++|++||+.++|||+.+.+++|+|||+.
T Consensus 102 ~~glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i~~~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~ 181 (286)
T PRK10334 102 AAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSRE 181 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCCccc
Q 009792 443 PWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFL 512 (525)
Q Consensus 443 ~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~~~e 512 (525)
+.||+.++++++| +|+++++++ +++.++++|.+. ++|+|.|.+.+++++++++++++|+++.+.++
T Consensus 182 ~~rr~~~~v~V~y~~d~~~~~~i---l~~~~~~~~~vl-~~p~p~v~~~~~~dssi~~~v~~wv~~~~~~~ 248 (286)
T PRK10334 182 PVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL-KDREMTVRLNELGASSINFVVRVWSNSGDLQN 248 (286)
T ss_pred CeEEEEEEEEecCCCCHHHHHHH---HHHHHHhCCcee-cCCCCEEEEEeeeCceEEEEEEEEEecchhHH
Confidence 8889999999999 588888887 677899999995 56889999999999999999999999876543
No 2
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=335.28 Aligned_cols=267 Identities=17% Similarity=0.212 Sum_probs=208.5
Q ss_pred ccccccchHHHHHHhHHHHHHHHHHHHHHHHHhhhcch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009792 242 SIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPT-----TIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMAS 316 (525)
Q Consensus 242 ~~~~~~~~~~l~~~l~~p~~ll~~ll~~~~l~~~~~~~-----~~~~~~l~~il~~llil~i~~~l~r~~~~~~~~~~~~ 316 (525)
.++...|++.+.++++ |+.++++++.+...-..+... ......+..+..+++++.++++.+.+.+..+++.+.+
T Consensus 416 ~~r~~~~~~~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~l~~ 494 (741)
T PRK11465 416 QKRLNGWLSAALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENRLAS 494 (741)
T ss_pred HHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778888888888 777766665444322211111 1223334445444444433333333333334444332
Q ss_pred h-----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhhheeeeecCcc
Q 009792 317 Q-----SIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPF 391 (525)
Q Consensus 317 ~-----~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~aGi~I~~~~pf 391 (525)
+ .....+++....+++++++++++++++++++.+|++++++++++|++|+|+|||+|++++|+++|++|+++|||
T Consensus 495 ~~~~~~~~~~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~pf 574 (741)
T PRK11465 495 DIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGM 574 (741)
T ss_pred hhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 1 11123456778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec-CCchhHHHHHHHHHH
Q 009792 392 SLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI-DDLDKVPQISDDVKS 470 (525)
Q Consensus 392 ~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~-~d~ekv~~I~~~i~e 470 (525)
++||||+++|.+|+||+|++|+|++|++||+.++|||+.+.+ +.|||+. .+++.++++++| +|.+++.++++++.+
T Consensus 575 ~vGD~I~v~g~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~ 651 (741)
T PRK11465 575 NTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVA 651 (741)
T ss_pred CCCCEEEECCeEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999975 9999985 556778999999 699999999988888
Q ss_pred HHHcCCCcc---cCCCccEEEEEeeCCCeeEEEEEEEEecCCccch
Q 009792 471 MLRSNTKVF---LGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLF 513 (525)
Q Consensus 471 ~L~~~p~i~---~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~~~ey 513 (525)
.+.++|++. .++ ++.+.+.+++++++.+++++|+++.++|+.
T Consensus 652 el~~dpe~~~~il~~-p~~vgV~~lgdSsi~lrvr~~t~p~~qw~v 696 (741)
T PRK11465 652 ELMENEEIRGLIIGE-PNFAGIVGLTNTAFTLRVSFTTLPLKQWTV 696 (741)
T ss_pred HhhcCccccccccCC-CCeEEEEEecCceEEEEEEEEECcchHHHH
Confidence 888888741 233 356889999999999999999999888764
No 3
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=9.9e-35 Score=335.21 Aligned_cols=219 Identities=21% Similarity=0.318 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 009792 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG 364 (525)
Q Consensus 285 ~l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~ 364 (525)
.+.+++.+++++++++++.+++..++++.+.++ .+.+......+.++++++++++++++++..+|++++++.+.+|++
T Consensus 832 tl~~ll~AllIliv~~~l~r~l~~lle~~l~~~--~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~gal 909 (1109)
T PRK10929 832 TLGSVLIAILVFIITTQLVRNLPALLELALLQH--LDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAAL 909 (1109)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 366788889999999999999999998877443 223566777899999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCc
Q 009792 365 GVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPW 444 (525)
Q Consensus 365 gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~ 444 (525)
|+++|||+|++++||+||++|+++|||++||+|+++|..|+|++|++|+|+|+|+||+.++|||+.+.++.|+|||+++.
T Consensus 910 GVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~ 989 (1109)
T PRK10929 910 GVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDS 989 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -eeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCC
Q 009792 445 -RALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMV 509 (525)
Q Consensus 445 -rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~ 509 (525)
+|+.++++++| +|+++++++ +.+.++++|.+. ++|+|.|++.+++++++.++++||+++..
T Consensus 990 ~~Rv~i~VgV~Y~sDie~v~~i---L~eaa~~~~~VL-~~P~P~V~~~~fgdssi~~elr~wv~~~~ 1052 (1109)
T PRK10929 990 VTRVVLTIPAPADANSEEVTEI---LLTAARRCSLVL-DNPAPEVFLVDLQQGIQIFELRIYAAEMG 1052 (1109)
T ss_pred ceEEEEEEEeCCCCCHHHHHHH---HHHHHHhCcccc-CCCCCEEEEEecCCCceEEEEEEEEcChh
Confidence 68889999999 588888887 667899999995 56899999999999999999999998654
No 4
>PRK11281 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=335.36 Aligned_cols=219 Identities=21% Similarity=0.352 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 009792 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG 364 (525)
Q Consensus 285 ~l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~ 364 (525)
++++++.++++++++|++.+++..++++...++. ..+......+.++++++++++++++++..+|++.+++.+.+|++
T Consensus 835 tl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~rl--~l~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaL 912 (1113)
T PRK11281 835 TLGNLLFALIILVVTYVLVRNLPGLLEVLVLSRL--NLRQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAAL 912 (1113)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 6888999999999999999999998887654321 22445566788999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCc
Q 009792 365 GVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPW 444 (525)
Q Consensus 365 gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~ 444 (525)
|+++|||+|++++||+||++|+++|||++||+|+++|..|+|++|++|+|+|+|+||+.++|||+.+.++.|+|||.++.
T Consensus 913 gVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I~~~~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~ 992 (1113)
T PRK11281 913 SVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTIGTFSGTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDT 992 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred -eeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCC
Q 009792 445 -RALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMV 509 (525)
Q Consensus 445 -rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~ 509 (525)
+|+.++++++| +|+++++++ +.+.++++|.+. ++|+|.|++.++++++++++++||++++.
T Consensus 993 ~~Rv~i~vgV~Y~sDi~~v~~i---L~eaa~~~p~Vl-~~P~P~V~~~~fgdssi~~~lr~wv~~~~ 1055 (1113)
T PRK11281 993 VTRVVIKVGVAYGSDLEKVREL---LLQAATENPRVM-KEPEPQVFFLNFGASTLDHELRLYVRELG 1055 (1113)
T ss_pred ceEEEEEEEeCCCCCHHHHHHH---HHHHHHcCcccc-cCCCCEEEEEeccCceEEEEEEEEEcCHh
Confidence 68889999999 588888877 677899999995 56889999999999999999999999754
No 5
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=100.00 E-value=6.7e-33 Score=267.74 Aligned_cols=184 Identities=32% Similarity=0.564 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEee
Q 009792 332 RISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGL 411 (525)
Q Consensus 332 ~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl 411 (525)
+++.++++++++++++..+|.+..++++++|++|+++|||+|++++|++||++|++++||++||||+++|..|+|+||++
T Consensus 2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~l 81 (206)
T PF00924_consen 2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEIGGVEGRVEEIGL 81 (206)
T ss_dssp -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEESSS-EEEEEEE-S
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEEEEeehHHHhcCc
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCcEEEEeCcccccCcEEeccC-CCceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEE
Q 009792 412 TTTTLLSAEKFPVIVPNSMFSSQVIVNKSR-APWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFL 489 (525)
Q Consensus 412 ~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr-~~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v 489 (525)
++|++|++||++++|||+.+.+++|.|+|+ .+.++..+.+++++ +|+++++++.+++.+.++++|.+.. .+.|.+.+
T Consensus 82 ~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~ 160 (206)
T PF00924_consen 82 RSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFK-EPEPRVVV 160 (206)
T ss_dssp SEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-T-TS-EEEEE
T ss_pred ceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhc-CCCCeEEE
Confidence 999999999999999999999999999999 77888999999999 4779999999999999999998854 46799999
Q ss_pred EeeCCCeeEEEEEEEEecCCccchhhc
Q 009792 490 SQIESSFAELNVGCNLKQMVKFLFSCF 516 (525)
Q Consensus 490 ~~~~~s~i~i~V~~~~k~~~~~ey~~~ 516 (525)
.++++++++++++|++++.++.++...
T Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~~~~~ 187 (206)
T PF00924_consen 161 DEIGDSSLEFRIRVYVKNQDPEKYWEI 187 (206)
T ss_dssp EEE-SSSEEEEEEEEEEC---CCHHHH
T ss_pred ccccCCceEEEEEEEEEeCchhhHHHH
Confidence 999999999999999999555555443
No 6
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.6e-31 Score=292.57 Aligned_cols=222 Identities=22% Similarity=0.351 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Q 009792 286 LAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG 365 (525)
Q Consensus 286 l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~g 365 (525)
+..++.+++++++++++.|++.++++..+..+. ..+......+.+++++++..+++++.++.+|++.+++-..+|++|
T Consensus 558 l~~ll~avl~~~~~~~l~r~~~~~L~~~vl~r~--~~~~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALs 635 (835)
T COG3264 558 LGALLQAVLLFLITYVLTRNLPGWLEVRVLQRL--DLDAGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALS 635 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhh
Confidence 556788889999999999999999986665442 225556678999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCC-c
Q 009792 366 VATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAP-W 444 (525)
Q Consensus 366 vaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~-~ 444 (525)
+++||+.|++++||+||+.|+++||+||||||++++.+|+|.+|+.|.|+|+|+|++.++|||+.|.++.|.||+.++ .
T Consensus 636 vGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~g~~~G~V~~I~vRAT~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~ 715 (835)
T COG3264 636 VGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTFDRKEVIVPNSAFITEQVINWSLRDTT 715 (835)
T ss_pred hhhchhHHHHHHHhhhhhhhheecCcccCCEEEECCceEEEEEEEeeEEEEEeCCCCeEEeccHHHHhhheeeeeccCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999885 6
Q ss_pred eeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCCccch
Q 009792 445 RALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLF 513 (525)
Q Consensus 445 rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~~~ey 513 (525)
.|+.+++++.| +|++++.++ +.+..++||.+. ++|+|.|.+.+++++++++|+++|+.+......
T Consensus 716 ~R~~i~v~vay~sD~~~V~~~---Ll~~A~~~p~Vl-~~P~P~v~f~~fg~s~L~fELr~~v~~~~~~~~ 781 (835)
T COG3264 716 TRLVIPVGVAYGSDPELVREL---LLEAAREHPRVL-KDPAPEVFFTAFGASSLDFELRVYVAELGDRMP 781 (835)
T ss_pred EEEEEEecccCCCCHHHHHHH---HHHHHHhCCCcc-CCCCCeeEeecccccceeEEEEEEeeccccccc
Confidence 68888899889 699998888 778899999995 679999999999999999999999998876554
No 7
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=4.9e-30 Score=261.85 Aligned_cols=181 Identities=28% Similarity=0.403 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhhheeeeecCccccCceeeeC-CeeEEEE
Q 009792 329 ALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAG-SVEGQVV 407 (525)
Q Consensus 329 ~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~-g~~G~Ve 407 (525)
.+..+.++++++++++.++..+|++++++++++|++|+|+|||+|++++|+++|+++++++||++||||+++ +.+|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i~~~~~G~V~ 165 (316)
T COG0668 86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEIGSGVEGTVE 165 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEECCCceEEEE
Confidence 788999999999999999999999999999999999999999999999999999999999999999999999 7999999
Q ss_pred EEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccE
Q 009792 408 EMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPY 486 (525)
Q Consensus 408 eIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~ 486 (525)
+|++++|++|++||++++|||+.+.++.|+|+++++.+++.++++++| +|.++++++..++.+.+..++. .+|+|.
T Consensus 166 ~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~ 242 (316)
T COG0668 166 DIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKILKEVLEELPEVLK---IEPEPV 242 (316)
T ss_pred EEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHHHHHHHHhcccccc---cCCCcE
Confidence 999999999999999999999999999999999998888989999999 6889999986555554444443 247899
Q ss_pred EEEEeeCCCeeEEEEEEEEecCCccc
Q 009792 487 CFLSQIESSFAELNVGCNLKQMVKFL 512 (525)
Q Consensus 487 V~v~~~~~s~i~i~V~~~~k~~~~~e 512 (525)
+++.+++++++.+++++|+++.+++.
T Consensus 243 v~~~~~~~~~~~i~v~~~t~~~~~~~ 268 (316)
T COG0668 243 IGVSELGDSGINIRVRFWTNPEDLWS 268 (316)
T ss_pred EEEeeccCCceEEEEEEEecchhHHH
Confidence 99999999999999999999877443
No 8
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=99.67 E-value=1.2e-16 Score=177.67 Aligned_cols=193 Identities=19% Similarity=0.273 Sum_probs=169.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhhh-eeeeecCccccCceeeeCC
Q 009792 323 DREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSG-LSMQFSKPFSLGDTIKAGS 401 (525)
Q Consensus 323 ~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~aG-i~I~~~~pf~IGD~I~i~g 401 (525)
.++.+.-+.+++.+++.++++++.+-.+|++...+++..+-.-+++.|.+.+++++++.+ ++++..+||.+||+|.+||
T Consensus 476 ~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg 555 (714)
T KOG4629|consen 476 TKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDG 555 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEec
Confidence 345667788889988888888888889999999998888877788899999999999975 8889999999999999999
Q ss_pred eeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCccc
Q 009792 402 VEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFL 480 (525)
Q Consensus 402 ~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~ 480 (525)
+.-.|+++++.+|.+..+||+.+++||+.+.+++|.|+.|++.+...+++.+.. ++.+|++.+.+.+.++++++|....
T Consensus 556 ~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~ 635 (714)
T KOG4629|consen 556 VNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDDYY 635 (714)
T ss_pred eEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccccc
Confidence 999999999999999999999999999999999999999998887778888887 7999999999999999999998853
Q ss_pred CCCccEEEEEeeCC-CeeEEEEEEEEecCCccchhhcc
Q 009792 481 GKEAPYCFLSQIES-SFAELNVGCNLKQMVKFLFSCFN 517 (525)
Q Consensus 481 ~~~~p~V~v~~~~~-s~i~i~V~~~~k~~~~~ey~~~q 517 (525)
|.+.+.+.++.+ +.+.+.++..-+...|+.-++..
T Consensus 636 --p~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~ 671 (714)
T KOG4629|consen 636 --PDLMVVIEEIEDLNSVKICVVVQHKINFQDMKERWS 671 (714)
T ss_pred --cchhhHHHhhhhcCcceEEEEEEeecchhhHHHHHh
Confidence 678899998887 67777777776666666655443
No 9
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=87.80 E-value=1 Score=34.41 Aligned_cols=37 Identities=16% Similarity=0.434 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009792 283 SQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSI 319 (525)
Q Consensus 283 ~~~l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~ 319 (525)
..|+|+++.+++++.++|++.+++.+++.+.+.+.+.
T Consensus 12 i~~lP~iv~AilIl~vG~~va~~v~~~~~~~l~~~~~ 48 (53)
T PF05552_consen 12 IAYLPNIVGAILILIVGWWVAKFVRKLVRRLLEKRGV 48 (53)
T ss_dssp -GGHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999999999887654
No 10
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=86.31 E-value=45 Score=35.19 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC--cchHHHHHHHH
Q 009792 289 AWRGAVILSFVWFLHRWKTNVFTRAMASQS----IAGLDREKMLALDRISSVGLFVIGLMALAEACG--VAVQSILTVGG 362 (525)
Q Consensus 289 il~~llil~i~~~l~r~~~~~~~~~~~~~~----~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lG--v~~~~lLa~lG 362 (525)
+..++....+.|++..+...+. ..+. +-+.+++....+++..+.+++++..++....+. .+....-.++|
T Consensus 84 l~~~l~~~a~~~~~~~~~~~l~----rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LG 159 (340)
T PF12794_consen 84 LGAALLAMALFWLVFEFFRRLL----RPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLG 159 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----CCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHH
Confidence 3344444555555555444332 2221 123356677777777777777766665555553 33333344455
Q ss_pred HHHHHHH
Q 009792 363 IGGVATA 369 (525)
Q Consensus 363 i~gvaig 369 (525)
-++..++
T Consensus 160 rl~~ii~ 166 (340)
T PF12794_consen 160 RLAFIIL 166 (340)
T ss_pred HHHHHHH
Confidence 4444443
No 11
>PRK11281 hypothetical protein; Provisional
Probab=84.39 E-value=88 Score=38.43 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009792 323 DREKMLALDRISSVGLFVIGLMALAEAC 350 (525)
Q Consensus 323 ~~~~~~~l~~i~~iii~ii~iiiiL~~l 350 (525)
.++....+++-.+.+++++..+++...+
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 639 (1113)
T PRK11281 612 PKEQVSHFRRQIVRLSLALLPLLFWSVV 639 (1113)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666555555555444444333
No 12
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=78.04 E-value=5.1 Score=35.30 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=33.2
Q ss_pred cccCceeee-CCeeEEEEEEeeEEEEEEecCCcEEEEeCcccc
Q 009792 391 FSLGDTIKA-GSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFS 432 (525)
Q Consensus 391 f~IGD~I~i-~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~ 432 (525)
.++||+|.. +|..|+|.+|+=.+..++..+|..+.+=-+.+.
T Consensus 53 Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~~~r~aI~ 95 (106)
T PRK05585 53 LAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKIQKSAIA 95 (106)
T ss_pred cCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEEEhHHhh
Confidence 589999966 899999999998888888888876665444433
No 13
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=77.43 E-value=6 Score=33.36 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=30.1
Q ss_pred cccCceeee-CCeeEEEEEEeeEEEEEEecCCcEEEEe
Q 009792 391 FSLGDTIKA-GSVEGQVVEMGLTTTTLLSAEKFPVIVP 427 (525)
Q Consensus 391 f~IGD~I~i-~g~~G~VeeIgl~sT~lrt~Dg~~v~IP 427 (525)
.++||.|.. +|..|+|.+++=.+..++..+|..+.+-
T Consensus 38 L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~~ 75 (84)
T TIGR00739 38 LKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITFS 75 (84)
T ss_pred CCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEEE
Confidence 589999998 7899999999977777777777666543
No 14
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=75.64 E-value=1.2e+02 Score=35.70 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=39.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009792 170 DGVSYTGQKAKDELSPQIEQLLDA----------HPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQ 231 (525)
Q Consensus 170 ~~v~~~~~~l~~~v~~~l~~~l~~----------~~~l~~~l~~l~l~l~~~ll~~lll~~llrrl~~~~~~ 231 (525)
+.+++..+..-+++...++++... ...+++.+..++++++++++++++++++.+.+.++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~r~~~~~l~~r~~~ 168 (741)
T PRK11465 97 QNVTEVSRHYGEALSARFGQLYRNITGSPHKPFNPQTFSNALTHFLMLAVLVFGFYWLIRLCALPLYRKMGQ 168 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444445555555544221 33457788888888899999999998887777666543
No 15
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=68.24 E-value=7.4 Score=30.49 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.8
Q ss_pred cccCceeee-CCeeEEEEEEeeEEEEEE
Q 009792 391 FSLGDTIKA-GSVEGQVVEMGLTTTTLL 417 (525)
Q Consensus 391 f~IGD~I~i-~g~~G~VeeIgl~sT~lr 417 (525)
-++||+|++ +|..|+|+++.=.|+.+.
T Consensus 4 a~vGdiIefk~g~~G~V~kv~eNSVIVd 31 (57)
T PF09953_consen 4 AKVGDIIEFKDGFTGIVEKVYENSVIVD 31 (57)
T ss_pred cccCcEEEEcCCcEEEEEEEecCcEEEE
Confidence 479999999 679999999987777664
No 16
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=64.73 E-value=16 Score=32.44 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=28.4
Q ss_pred cccCceeee-CCeeEEEEEEeeEEEEEEecCCcEEEE
Q 009792 391 FSLGDTIKA-GSVEGQVVEMGLTTTTLLSAEKFPVIV 426 (525)
Q Consensus 391 f~IGD~I~i-~g~~G~VeeIgl~sT~lrt~Dg~~v~I 426 (525)
.++||.|.. +|..|+|.+|+=-+..++..+|..+.+
T Consensus 39 Lk~GD~VvT~gGi~G~V~~I~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 39 LQPGDRVHTTSGLQATIVGITDDTVDLEIAPGVVTTW 75 (109)
T ss_pred cCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 589999987 789999999987666677666655544
No 17
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.70 E-value=7.1 Score=31.46 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.4
Q ss_pred CccccCceeee-CCeeEEEEEEeeEEEEE
Q 009792 389 KPFSLGDTIKA-GSVEGQVVEMGLTTTTL 416 (525)
Q Consensus 389 ~pf~IGD~I~i-~g~~G~VeeIgl~sT~l 416 (525)
.--++||.|++ +|..|.||+++=.++.+
T Consensus 22 ~~a~vgniief~dgl~g~vek~nensviv 50 (81)
T COG4873 22 KIAKVGNIIEFKDGLTGVVEKVNENSVIV 50 (81)
T ss_pred eeeeccceEEEcccceeeeeeecCCcEEE
Confidence 34579999999 89999999998777654
No 18
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=62.81 E-value=1.9e+02 Score=29.80 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009792 197 LRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYA 229 (525)
Q Consensus 197 l~~~l~~l~l~l~~~ll~~lll~~llrrl~~~~ 229 (525)
+......++.++++.+++|++.+.+.+.+.+..
T Consensus 24 ~~~~~~~i~~al~il~~~~~~~~~i~~~~~~~~ 56 (286)
T PRK10334 24 LLSYAVNIVAALAIIIVGLIIARMISNAVNRLM 56 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666777777655544444443
No 19
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=62.20 E-value=2.1e+02 Score=30.15 Aligned_cols=113 Identities=15% Similarity=0.082 Sum_probs=63.6
Q ss_pred CCcccccccchHHHHHHhHHHHHHHHHHHHHHHHHh---hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009792 239 GGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGM---MVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMA 315 (525)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~p~~ll~~ll~~~~l~~---~~~~~~~~~~~l~~il~~llil~i~~~l~r~~~~~~~~~~~ 315 (525)
+++...+..|.+...+.+++-++++.++++...... ...+.....+.+.++...+..+.++++..+..+.-...+..
T Consensus 108 ~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~ 187 (340)
T PF12794_consen 108 NGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQP 187 (340)
T ss_pred CCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccC
Confidence 345568899999988888887777665544332222 22234445566777777777777888877765543221111
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHH-HHHHHHHhCcchHHH
Q 009792 316 SQSIAGLDREKMLALDRISSVGLFVIG-LMALAEACGVAVQSI 357 (525)
Q Consensus 316 ~~~~~~~~~~~~~~l~~i~~iii~ii~-iiiiL~~lGv~~~~l 357 (525)
......+.++.+...++.++- +++++..+|.--++.
T Consensus 188 ------~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yTA~ 224 (340)
T PF12794_consen 188 ------KPDSWIHRLRYLWWPLLILAPLALIVLALLGYYYTAL 224 (340)
T ss_pred ------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 122334445555554444333 344455567665543
No 20
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=60.74 E-value=12 Score=23.98 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=16.7
Q ss_pred ccccCceeee-----CCeeEEEEEEe
Q 009792 390 PFSLGDTIKA-----GSVEGQVVEMG 410 (525)
Q Consensus 390 pf~IGD~I~i-----~g~~G~VeeIg 410 (525)
+|++||.|++ .|..|+|.++.
T Consensus 1 ~~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence 5789999999 35788888774
No 21
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=57.54 E-value=24 Score=30.67 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=32.9
Q ss_pred cccCceeee-CCeeEEEEEEeeEEEEEEecCCcEEEEeCcccc
Q 009792 391 FSLGDTIKA-GSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFS 432 (525)
Q Consensus 391 f~IGD~I~i-~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~ 432 (525)
.+.||.|.. +|..|+|.+|+=....|.-.||..+.+--+.+.
T Consensus 44 L~kGD~VvT~gGi~G~V~~v~d~~v~I~l~~~~~i~~~k~aI~ 86 (97)
T COG1862 44 LKKGDEVVTIGGIVGTVTKVGDDTVEIELGDGTKIKFEKEAIA 86 (97)
T ss_pred ccCCCEEEEcCCeEEEEEEEecCcEEEEECCCeEEEEEHHHHH
Confidence 589999987 679999999998777777668877766544443
No 22
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=54.90 E-value=4 Score=34.15 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=0.0
Q ss_pred ccccCceeee-CCeeEEEEEEeeEEEEEEecCCcEEEEe
Q 009792 390 PFSLGDTIKA-GSVEGQVVEMGLTTTTLLSAEKFPVIVP 427 (525)
Q Consensus 390 pf~IGD~I~i-~g~~G~VeeIgl~sT~lrt~Dg~~v~IP 427 (525)
-.++||+|.. +|..|+|.+++=.+..++..+|..+.+-
T Consensus 36 ~Lk~Gd~VvT~gGi~G~V~~i~~~~v~lei~~g~~i~v~ 74 (82)
T PF02699_consen 36 SLKPGDEVVTIGGIYGTVVEIDDDTVVLEIAPGVEITVE 74 (82)
T ss_dssp ---------------------------------------
T ss_pred cCCCCCEEEECCcEEEEEEEEeCCEEEEEECCCeEEEEE
Confidence 4689999998 7899999999888888888887666543
No 23
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=54.65 E-value=28 Score=31.11 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=27.9
Q ss_pred cccCceeee-CCeeEEEEEEee--EEEEEEecCCcEEEEeCccc
Q 009792 391 FSLGDTIKA-GSVEGQVVEMGL--TTTTLLSAEKFPVIVPNSMF 431 (525)
Q Consensus 391 f~IGD~I~i-~g~~G~VeeIgl--~sT~lrt~Dg~~v~IPNs~l 431 (525)
.++||.|.. +|..|+|.+|+- -...+.. +|..+.+=-+.+
T Consensus 37 Lk~GD~VvT~GGi~G~V~~I~~~~~~v~le~-~gv~i~v~r~AI 79 (113)
T PRK06531 37 IQKGDEVVTIGGLYGTVDEVDTEAKTIVLDV-DGVYLTFELAAI 79 (113)
T ss_pred cCCCCEEEECCCcEEEEEEEecCCCEEEEEE-CCEEEEEEhhHh
Confidence 579999986 889999999985 3455554 665555544433
No 24
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=50.29 E-value=2.4e+02 Score=27.20 Aligned_cols=79 Identities=9% Similarity=-0.022 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHH
Q 009792 297 SFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVL 376 (525)
Q Consensus 297 ~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l 376 (525)
++...+.-+.+.+..|-.++...........+...+.+..+++..+++.++-=+-+++..++. ...+.+|++..-+.
T Consensus 118 ~~~~~~~~~vDGl~~R~iRr~~~g~eSp~~~h~a~~~~~~~~~~~~~lyL~lP~~i~P~~~~l---~~a~llg~av~~t~ 194 (198)
T PF14348_consen 118 FLLFALAALVDGLVRRDIRRFGFGRESPFVYHHAKRSVIPLLILPWVLYLSLPFSIPPNLVPL---PAALLLGLAVWITA 194 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccccChHHHHH---HHHHHHHHHHHHHH
Confidence 344445556666666666655443333333334444444333333122111112444444332 33444555555554
Q ss_pred hh
Q 009792 377 GN 378 (525)
Q Consensus 377 ~N 378 (525)
+|
T Consensus 195 s~ 196 (198)
T PF14348_consen 195 SN 196 (198)
T ss_pred Hh
Confidence 44
No 25
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=46.50 E-value=25 Score=27.39 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=21.4
Q ss_pred CccccCceeeeC---CeeEEEEEEeeEEEEEE
Q 009792 389 KPFSLGDTIKAG---SVEGQVVEMGLTTTTLL 417 (525)
Q Consensus 389 ~pf~IGD~I~i~---g~~G~VeeIgl~sT~lr 417 (525)
.+..+||||.++ +..|.|+++--|.+.|.
T Consensus 36 ~~~~VGD~V~~~~~~~~~~~I~~vl~R~s~l~ 67 (68)
T cd04466 36 NPPAVGDRVEFEPEDDGEGVIEEILPRKNLLI 67 (68)
T ss_pred CCCCCCcEEEEEECCCCcEEEEEEeccceEEE
Confidence 356899999874 45678888887777653
No 26
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=46.06 E-value=59 Score=27.57 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=29.7
Q ss_pred ccccCceeeeCC-eeEEEEEEeeEE--------EEEEecCCcEEEEeCccccc
Q 009792 390 PFSLGDTIKAGS-VEGQVVEMGLTT--------TTLLSAEKFPVIVPNSMFSS 433 (525)
Q Consensus 390 pf~IGD~I~i~g-~~G~VeeIgl~s--------T~lrt~Dg~~v~IPNs~l~s 433 (525)
+|++||+|.-.+ --|+|++|.-.. -.|+-.++..++||-...-.
T Consensus 1 mf~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~~~~~~i~vPv~~~~~ 53 (98)
T PF02559_consen 1 MFKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEYADDDTIYVPVDNADK 53 (98)
T ss_dssp T--TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEECCCEEEEEECCCGGG
T ss_pred CCCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEECCCCEEEEEcCChhh
Confidence 589999999865 567777766544 35555566689999887543
No 27
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=42.65 E-value=13 Score=28.78 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=11.8
Q ss_pred cCccccCceeeeCCeeEEEEEE
Q 009792 388 SKPFSLGDTIKAGSVEGQVVEM 409 (525)
Q Consensus 388 ~~pf~IGD~I~i~g~~G~VeeI 409 (525)
..||+.||+|.+-+..|+---|
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr~~Ti 24 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGRKHTI 24 (54)
T ss_dssp --S--TT-EEEEEETT--EEEE
T ss_pred cCCCCCCCEEEEccCCCCeeeE
Confidence 4699999999998887775433
No 28
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=42.00 E-value=2e+02 Score=31.54 Aligned_cols=30 Identities=10% Similarity=0.321 Sum_probs=18.9
Q ss_pred ccccchHHHHHHhHHHHH-HHHHHHHHHHHH
Q 009792 244 EQVPYEKSFWGALEDPVR-YLITFMAFVQIG 273 (525)
Q Consensus 244 ~~~~~~~~l~~~l~~p~~-ll~~ll~~~~l~ 273 (525)
-+.+|.+.+.+.+..|.. .++..+.++.+.
T Consensus 219 ~~ps~~~~ll~~ItdP~va~ILl~LG~~gLi 249 (436)
T COG1030 219 LEPSWRERLLNWITDPSVALILLLLGFLGLI 249 (436)
T ss_pred cCccHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 346688889998888854 344444554443
No 29
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=39.43 E-value=43 Score=22.67 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=15.9
Q ss_pred cCceeee-----CCeeEEEEEEee
Q 009792 393 LGDTIKA-----GSVEGQVVEMGL 411 (525)
Q Consensus 393 IGD~I~i-----~g~~G~VeeIgl 411 (525)
+||+|.+ .|..|.|.+|.-
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~ 24 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDR 24 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEET
T ss_pred CCCEEEEeEcCCCCceEEEEEEEC
Confidence 5999999 479999998864
No 30
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=38.87 E-value=8.6e+02 Score=30.21 Aligned_cols=71 Identities=11% Similarity=-0.082 Sum_probs=39.9
Q ss_pred CCcccccccchHHHHHHhHHHHHHHHHHHHH---HHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009792 239 GGLSIEQVPYEKSFWGALEDPVRYLITFMAF---VQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNV 309 (525)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~p~~ll~~ll~~---~~l~~~~~~~~~~~~~l~~il~~llil~i~~~l~r~~~~~ 309 (525)
+++...+..|.+...+.+++-.+.+.++++- ..+.....+.......+.++..+++.++++|+..++.+.-
T Consensus 581 ~Gl~~~HF~w~~~~v~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~lgr~~~i~~~~~l~~~~~~~~~~~ 654 (1109)
T PRK10929 581 NGLFIAHFGWPRERVARAMRYYLLSIGLIVPLIMALITFDNLNDREFSGTLGRLCFILLCGALSLVTLSLKRAG 654 (1109)
T ss_pred CCeeHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445578888888877666655543332211 1122222333444455677777777777777777655543
No 31
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=38.16 E-value=5.1e+02 Score=27.41 Aligned_cols=21 Identities=5% Similarity=0.210 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009792 285 YLAQAWRGAVILSFVWFLHRW 305 (525)
Q Consensus 285 ~l~~il~~llil~i~~~l~r~ 305 (525)
++.+++..++.+.++++...+
T Consensus 109 ~~~~ii~vi~t~il~y~G~~~ 129 (356)
T COG4956 109 FISTIIPVILTIILAYFGFQL 129 (356)
T ss_pred HHHhHHHHHHHHHHHHHhhHH
Confidence 344555555555556555544
No 32
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=37.94 E-value=88 Score=23.63 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009792 202 VPVSCYLTGTVLAWVVMPRVLRRFHKYAIQ 231 (525)
Q Consensus 202 ~~l~l~l~~~ll~~lll~~llrrl~~~~~~ 231 (525)
..+++++++.+++|++.+.+.+-+.+.+.+
T Consensus 16 P~iv~AilIl~vG~~va~~v~~~~~~~l~~ 45 (53)
T PF05552_consen 16 PNIVGAILILIVGWWVAKFVRKLVRRLLEK 45 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777888888886666656665554
No 33
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=37.94 E-value=1.3e+02 Score=28.19 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=15.9
Q ss_pred eeeeecCccccCceeeeCC
Q 009792 383 LSMQFSKPFSLGDTIKAGS 401 (525)
Q Consensus 383 i~I~~~~pf~IGD~I~i~g 401 (525)
-.+-+-+|+++||.|....
T Consensus 89 q~~~f~~PV~~GDtL~~~~ 107 (159)
T PRK13692 89 QVLKFEKPIVAGDKLYCDV 107 (159)
T ss_pred eEEEEeCCccCCCEEEEEE
Confidence 4678889999999998754
No 34
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.88 E-value=1.1e+02 Score=36.22 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=31.7
Q ss_pred CccccCceeeeC--CeeEEEEEEee-EEEEEEecCCcEEEEeCcccc
Q 009792 389 KPFSLGDTIKAG--SVEGQVVEMGL-TTTTLLSAEKFPVIVPNSMFS 432 (525)
Q Consensus 389 ~pf~IGD~I~i~--g~~G~VeeIgl-~sT~lrt~Dg~~v~IPNs~l~ 432 (525)
+++++||.|.+. |..|+|.+|.= ...++ ..++-.+.||-+.+.
T Consensus 635 ~~~~~Gd~V~v~~~~~~g~v~~i~~~~~~~V-~~g~~k~~v~~~~l~ 680 (782)
T PRK00409 635 EELKVGDEVKYLSLGQKGEVLSIPDDKEAIV-QAGIMKMKVPLSDLE 680 (782)
T ss_pred cCCCCCCEEEEccCCceEEEEEEcCCCeEEE-EECCEEEEEeHHHce
Confidence 569999999995 48999999942 23333 346677888888874
No 35
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=36.79 E-value=44 Score=40.40 Aligned_cols=43 Identities=12% Similarity=0.215 Sum_probs=36.0
Q ss_pred CccccCceeee----------CCeeEEEEEEeeEEEEEEecCCcEEEEeCccc
Q 009792 389 KPFSLGDTIKA----------GSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMF 431 (525)
Q Consensus 389 ~pf~IGD~I~i----------~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l 431 (525)
+.|++||.|.+ +|..|+|++|.-...+++..||+.+.+|...+
T Consensus 599 r~~~vGDrVm~~rNd~~lgV~NGd~GtV~~I~~~~i~V~~d~gr~V~~~~~~~ 651 (988)
T PRK13889 599 RSFASGDRVMFLQNERGLGVKNGTLGTIEQVSAQSMSVRLDDGRSVAFDLKDY 651 (988)
T ss_pred ccccCCCEEEEeecCCcCCEeCCCeEEEEEecCCeEEEEECCCeEEEecHHHc
Confidence 57999999986 56899999998888888888888888886544
No 36
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=35.77 E-value=1.1e+02 Score=27.27 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=26.0
Q ss_pred eeeecCccccCceeeeCCeeEEEEE--------EeeEEEEEEecCCcEE
Q 009792 384 SMQFSKPFSLGDTIKAGSVEGQVVE--------MGLTTTTLLSAEKFPV 424 (525)
Q Consensus 384 ~I~~~~pf~IGD~I~i~g~~G~Vee--------Igl~sT~lrt~Dg~~v 424 (525)
-+-+.+|+.+||.|.+...-..+.+ +-...+.+++.+|+.+
T Consensus 82 ~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~v 130 (140)
T cd03454 82 ELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQRGEVV 130 (140)
T ss_pred eeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCCCCEE
Confidence 6789999999999998553332221 2233344556677654
No 37
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=34.33 E-value=87 Score=29.11 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=30.0
Q ss_pred CccccCceeee-----CCeeEEEEEEeeE--EEEEEecC-CcE--EEEeCccc
Q 009792 389 KPFSLGDTIKA-----GSVEGQVVEMGLT--TTTLLSAE-KFP--VIVPNSMF 431 (525)
Q Consensus 389 ~pf~IGD~I~i-----~g~~G~VeeIgl~--sT~lrt~D-g~~--v~IPNs~l 431 (525)
.+|++||+|++ .|..|.|++++-. ..++.-.+ ... ++||++.+
T Consensus 93 ~~~~~G~~V~I~~Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~ 145 (153)
T PRK08559 93 EGIKEGDIVELIAGPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQV 145 (153)
T ss_pred cCCCCCCEEEEeccCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEE
Confidence 56999999999 3589999998633 23343333 323 88888877
No 38
>PF02934 GatB_N: GatB/GatE catalytic domain; InterPro: IPR006075 Glutamyl-tRNA(Gln) amidotransferase subunit B (6.3.5 from EC) [] is a microbial enzyme that furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The enzyme is composed of three subunits: A (an amidase), B and C. It also exists in eukaryotes as a protein targeted to the mitochondria. ; GO: 0016874 ligase activity; PDB: 3H0M_H 3H0R_K 3H0L_K 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B 2G5H_B 2DQN_B ....
Probab=32.97 E-value=1.1e+02 Score=31.74 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=67.9
Q ss_pred hhHhhheeee-ecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec
Q 009792 377 GNVLSGLSMQ-FSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI 455 (525)
Q Consensus 377 ~N~~aGi~I~-~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~ 455 (525)
.++=.|.||. .+.|+-.|=+|.+....|.-.+|++....+....|+.+.-.. =.+.....+.|.+.--+++.-.=++
T Consensus 81 pDlPkgYQITQ~~~Pi~~~G~i~i~~~~~~~k~I~I~~ihlEEDagK~~h~~~--~~~~s~vD~NRaG~PLiEIVTePd~ 158 (289)
T PF02934_consen 81 PDLPKGYQITQYDNPIAENGYIEIEFEDGREKRIRIERIHLEEDAGKSIHDGG--GEDYSLVDYNRAGVPLIEIVTEPDI 158 (289)
T ss_dssp TTBTTSEEEEESSS-SEEEEEEEETECTSSTEEEEEEEEEEEE---EEEEETT---TTEEEEETTSTT-EEEEEEE-TTB
T ss_pred CccCcCccccCCccceecCCEEEEEecCCceEEEEEEEEEehhhhhhhccccc--cceeeEEcccCCCccceEEeeCCCC
Confidence 3455788886 567999999999987777778999999999999999988764 1122356788877655554333344
Q ss_pred CCchhHHHHHHHHHHHHHcCCC
Q 009792 456 DDLDKVPQISDDVKSMLRSNTK 477 (525)
Q Consensus 456 ~d~ekv~~I~~~i~e~L~~~p~ 477 (525)
.+.+++.+.++++++.|+...-
T Consensus 159 ~s~~EA~~~~~~L~~il~~lgv 180 (289)
T PF02934_consen 159 RSPEEAAAFLKKLRRILRYLGV 180 (289)
T ss_dssp -SHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHhcCc
Confidence 6888888888888888876543
No 39
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=32.50 E-value=59 Score=38.13 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=35.6
Q ss_pred CccccCceeee----------CCeeEEEEEEeeEEEEEEecCCcEEEEeCccc
Q 009792 389 KPFSLGDTIKA----------GSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMF 431 (525)
Q Consensus 389 ~pf~IGD~I~i----------~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l 431 (525)
..|++||.|.. +|..|+|++|.-....++..+|+.+.+|...+
T Consensus 606 ~~~~~GDrV~~~~N~~~~gv~NGd~g~V~~i~~~~i~v~~~~G~~v~~~~~~~ 658 (744)
T TIGR02768 606 RKFAAGDRIVFLENNRDLGVKNGMLGTVEEIEDGRLVVQLDSGELVIIPQAEY 658 (744)
T ss_pred ceecCCCEEEEEecccccCCcCCCEEEEEEecCCeEEEEECCCCEEEECHHHh
Confidence 48999999996 56899999998777778887888888886554
No 40
>PF07243 Phlebovirus_G1: Phlebovirus glycoprotein G1; InterPro: IPR010826 This domain is found in several Phlebovirus glycoprotein G1 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].; GO: 0016021 integral to membrane, 0019012 virion
Probab=31.81 E-value=2.4e+02 Score=31.67 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=8.1
Q ss_pred HHhHHHHHHHHHH
Q 009792 254 GALEDPVRYLITF 266 (525)
Q Consensus 254 ~~l~~p~~ll~~l 266 (525)
+.++.|+.|+..+
T Consensus 452 kkL~sPf~Wl~LL 464 (526)
T PF07243_consen 452 KKLRSPFMWLSLL 464 (526)
T ss_pred HHHhCHHHHHHHH
Confidence 3467788877433
No 41
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=31.75 E-value=9.2e+02 Score=28.47 Aligned_cols=20 Identities=15% Similarity=0.264 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHHHHHcCCC
Q 009792 457 DLDKVPQISDDVKSMLRSNTK 477 (525)
Q Consensus 457 d~ekv~~I~~~i~e~L~~~p~ 477 (525)
|++.++ .++++.+.+++.+.
T Consensus 448 dp~~l~-~md~l~~~l~~~~~ 467 (727)
T COG1033 448 DPEVLR-WMDELEEELEKGEE 467 (727)
T ss_pred ChHHHH-HHHHHHHHHHhcce
Confidence 344443 44667777777766
No 42
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=31.27 E-value=1.6e+02 Score=28.40 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=29.0
Q ss_pred HhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhh
Q 009792 349 ACGVAVQSILTVGGIGGVATAFASRDVLGNVLS 381 (525)
Q Consensus 349 ~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~a 381 (525)
++|+|+.-+++++++++.++|+....+++|.+=
T Consensus 71 I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf 103 (173)
T PF08566_consen 71 IMGLDPFMVYGLATLACGALGWLVGPSLGNQVF 103 (173)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 568998888999999999999999999998763
No 43
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=30.31 E-value=1.4e+02 Score=27.04 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=46.9
Q ss_pred ccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeecCCchhHHHH
Q 009792 392 SLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQI 464 (525)
Q Consensus 392 ~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~~d~ekv~~I 464 (525)
++|+.|+.++.-|.||.........--.+|+++-+-....-+-...|-...+.-++ +.+. .++.++.+.+
T Consensus 45 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl-~~i~--~~~~~~~~~L 114 (127)
T TIGR00527 45 EVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWL-IKVK--LSDESELEGL 114 (127)
T ss_pred CCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEE-EEEe--cCCHHHHHhc
Confidence 68999999999999999998877666788887777555554444556554433344 2333 4444455554
No 44
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=28.20 E-value=1.3e+02 Score=27.47 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=27.4
Q ss_pred CccccCceeee-----CCeeEEEEEEeeE--EEEEEe-cCCcE--EEEeCccc
Q 009792 389 KPFSLGDTIKA-----GSVEGQVVEMGLT--TTTLLS-AEKFP--VIVPNSMF 431 (525)
Q Consensus 389 ~pf~IGD~I~i-----~g~~G~VeeIgl~--sT~lrt-~Dg~~--v~IPNs~l 431 (525)
..+++||+|++ .|.+|.|++++-. ..++.- .-+.. +.+|+..+
T Consensus 85 ~~~~~Gd~V~I~~GPf~G~~g~v~~~d~~k~~v~v~l~~~~~~~~v~v~~~~l 137 (145)
T TIGR00405 85 ESIKKGDIVEIISGPFKGERAKVIRVDESKEEVTLELIEAAVPIPVTVKGDQV 137 (145)
T ss_pred cccCCCCEEEEeecCCCCCeEEEEEEcCCCCEEEEEEEEcCccceEEEeeeEE
Confidence 45999999999 3689999988521 222221 12334 67776665
No 45
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=26.90 E-value=1.7e+02 Score=25.45 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=27.8
Q ss_pred hhheeeeecCccccCceeeeCCeeEEEEE--EeeEEEEEEecCCcEE
Q 009792 380 LSGLSMQFSKPFSLGDTIKAGSVEGQVVE--MGLTTTTLLSAEKFPV 424 (525)
Q Consensus 380 ~aGi~I~~~~pf~IGD~I~i~g~~G~Vee--Igl~sT~lrt~Dg~~v 424 (525)
+.++-+-+.+|..+||.+.+...--.+.+ +--..+.+++.+|+.+
T Consensus 69 ~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq~G~~v 115 (123)
T cd03455 69 VKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARNSEGDHV 115 (123)
T ss_pred EEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEcCCCCEE
Confidence 45567889999999999998542111111 2233455566777654
No 46
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=26.79 E-value=1.5e+02 Score=26.45 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.4
Q ss_pred eeeecCccccCceeeeCC
Q 009792 384 SMQFSKPFSLGDTIKAGS 401 (525)
Q Consensus 384 ~I~~~~pf~IGD~I~i~g 401 (525)
-+-+.+|..+||.+.+..
T Consensus 85 ~~~f~~pv~~GDtl~~~~ 102 (146)
T cd03451 85 EVRFPAPVFHGDTLYAES 102 (146)
T ss_pred EEEecCCCCCCCEEEEEE
Confidence 578999999999998643
No 47
>PRK13892 conjugal transfer protein TrbC; Provisional
Probab=26.76 E-value=2.9e+02 Score=25.40 Aligned_cols=66 Identities=11% Similarity=0.217 Sum_probs=45.8
Q ss_pred ccccchHH---HHHHhHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009792 244 EQVPYEKS---FWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNV 309 (525)
Q Consensus 244 ~~~~~~~~---l~~~l~~p~~ll~~ll~~~~l~~~~~~~~~~~~~l~~il~~llil~i~~~l~r~~~~~ 309 (525)
...||+.- +.+.+..|+...+.++++...+....-......+..+++.+++.+.+.+....+...+
T Consensus 42 ~glPWE~pL~~I~~SitGPVA~~isvI~Iv~aG~~LaFGge~~gf~R~li~vVl~lsi~~~A~n~~~~f 110 (134)
T PRK13892 42 GSLPYESWLTNLRNSVTGPVAFALSIIGIVVAGGILIFGGELNGFFRTLIFIVLVMALLVGAQNMMSTF 110 (134)
T ss_pred CCCCchhHHHHHHHHhhchHHHHHHHHHHHHhChHhhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777665 4557899998888877776555444333344566788888888888888777776655
No 48
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=26.71 E-value=6.2e+02 Score=24.87 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHH
Q 009792 182 ELSPQIEQLLDAHPYLRDVIVPVS 205 (525)
Q Consensus 182 ~v~~~l~~~l~~~~~l~~~l~~l~ 205 (525)
.+..-+.-++..+.-....+..++
T Consensus 109 aLlsgitaff~~nA~~~GlItlll 132 (226)
T COG4858 109 ALLSGITAFFQKNAQVYGLITLLL 132 (226)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHH
Confidence 444555566666543333333333
No 49
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=26.52 E-value=4.3e+02 Score=23.01 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=12.1
Q ss_pred ccchHHHHHHhHHHHHHHHHH
Q 009792 246 VPYEKSFWGALEDPVRYLITF 266 (525)
Q Consensus 246 ~~~~~~l~~~l~~p~~ll~~l 266 (525)
.+|.+.-.+.+++....++..
T Consensus 54 ~~Fs~~n~~~l~~ig~~~l~~ 74 (136)
T PF11188_consen 54 KPFSPENIRRLRRIGWLLLII 74 (136)
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 556666666666655554443
No 50
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=25.75 E-value=89 Score=25.74 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=18.5
Q ss_pred eecCccccCceeeeC-----CeeEEEEEEeeEE
Q 009792 386 QFSKPFSLGDTIKAG-----SVEGQVVEMGLTT 413 (525)
Q Consensus 386 ~~~~pf~IGD~I~i~-----g~~G~VeeIgl~s 413 (525)
.-+|.|++||.+.+. +..|+.....+.+
T Consensus 24 kNDRdf~VGD~L~L~E~~~~~YTGr~~~~~Ity 56 (72)
T PF12961_consen 24 KNDRDFQVGDILVLREWDNGEYTGREIEAEITY 56 (72)
T ss_pred ecCCCCCCCCEEEEEEecCCCccccEEEEEEEE
Confidence 357899999999983 3556654444333
No 51
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=25.68 E-value=1.2e+02 Score=26.64 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=29.0
Q ss_pred HHHhhHhhheeeeecCccccCceeeeCCeeEEEEEE-e-------eEEEEEEecCCcEE
Q 009792 374 DVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEM-G-------LTTTTLLSAEKFPV 424 (525)
Q Consensus 374 d~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeI-g-------l~sT~lrt~Dg~~v 424 (525)
+...-+-++--+-+-+|.++||.+.....--.|.+- + ...+++++.||+.+
T Consensus 71 ~~~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v 129 (132)
T PF13452_consen 71 DLTRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELV 129 (132)
T ss_dssp -GGGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEE
T ss_pred ChhhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEE
Confidence 334444577888999999999999985532223322 1 12344566778765
No 52
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=25.61 E-value=2.3e+02 Score=24.13 Aligned_cols=46 Identities=20% Similarity=0.074 Sum_probs=27.9
Q ss_pred HhhheeeeecCccccCceeeeCCeeEEEEE-----EeeEEEEEEecCCcEE
Q 009792 379 VLSGLSMQFSKPFSLGDTIKAGSVEGQVVE-----MGLTTTTLLSAEKFPV 424 (525)
Q Consensus 379 ~~aGi~I~~~~pf~IGD~I~i~g~~G~Vee-----Igl~sT~lrt~Dg~~v 424 (525)
..+..-+-+.+|+.+||.+.+....-.+.+ +....+...+.+|+.+
T Consensus 69 ~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v 119 (127)
T cd03441 69 NLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQGGEVV 119 (127)
T ss_pred eeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeCCCCEE
Confidence 345677889999999999998543222221 2334444555556544
No 53
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=25.32 E-value=63 Score=24.92 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=18.1
Q ss_pred cccCceeee--CCeeEEEEEEeeE
Q 009792 391 FSLGDTIKA--GSVEGQVVEMGLT 412 (525)
Q Consensus 391 f~IGD~I~i--~g~~G~VeeIgl~ 412 (525)
|++||.|.+ +|..-+|.+++-.
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~~~ 24 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVGPN 24 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEcccc
Confidence 789999999 7888888877543
No 54
>PRK01202 glycine cleavage system protein H; Provisional
Probab=25.24 E-value=1.6e+02 Score=26.51 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=39.5
Q ss_pred eecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCC
Q 009792 386 QFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRA 442 (525)
Q Consensus 386 ~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~ 442 (525)
+++=| ++||.|+-++.-|.||.....+...--.+|+++-+-.....+-...|-...
T Consensus 41 ~v~lp-~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~ 96 (127)
T PRK01202 41 FVELP-EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPY 96 (127)
T ss_pred EEEcC-CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCC
Confidence 44444 889999999999999999887766666788877664444444444554443
No 55
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=25.20 E-value=1e+02 Score=26.37 Aligned_cols=45 Identities=16% Similarity=0.342 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCcch-HHHHHHHHHHHHHHHHHhHHHHhhHhhhe
Q 009792 339 FVIGLMALAEACGVAV-QSILTVGGIGGVATAFASRDVLGNVLSGL 383 (525)
Q Consensus 339 ~ii~iiiiL~~lGv~~-~~lLa~lGi~gvaigfaaqd~l~N~~aGi 383 (525)
+.+.++++|..+.+++ -+++.++-++|++-|+...++++-|.+|+
T Consensus 5 iaV~vm~~L~LlR~nVvlalliaalvgGl~~Gl~l~~t~~~~~~Gm 50 (88)
T PF13726_consen 5 IAVLVMIVLSLLRVNVVLALLIAALVGGLVGGLGLGETMSAFIDGM 50 (88)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh
Confidence 3445566666666664 46677777778888888888888888876
No 56
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.98 E-value=8.9e+02 Score=26.09 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=25.9
Q ss_pred EEEEeCcccccCcEEeccCCCceeEEEEEeeecC-CchhH--------HHHHHHHHHHHHcCCC
Q 009792 423 PVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKV--------PQISDDVKSMLRSNTK 477 (525)
Q Consensus 423 ~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~~-d~ekv--------~~I~~~i~e~L~~~p~ 477 (525)
.--||+..+. |.|-|+ ..+.+.|+ ...++ +.+.-+|+++.++|.-
T Consensus 257 ~~~Vp~AdvV---ItNPTH-------~AVAlkY~~~~~~AP~VvAKG~d~~AlkIreiA~e~~I 310 (363)
T COG1377 257 MSDVPKADVV---ITNPTH-------YAVALKYDPEKMPAPVVVAKGVDLVALKIREIAKEHGI 310 (363)
T ss_pred HhhCCCCCEE---eeCcCc-------eeeeeeeccccCCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 3568888876 788775 23444452 11111 3444557788887753
No 57
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=24.66 E-value=3.2e+02 Score=23.87 Aligned_cols=20 Identities=25% Similarity=0.597 Sum_probs=16.3
Q ss_pred heeeeecCccccCceeeeCC
Q 009792 382 GLSMQFSKPFSLGDTIKAGS 401 (525)
Q Consensus 382 Gi~I~~~~pf~IGD~I~i~g 401 (525)
++-+-+-+|..+||.+.+..
T Consensus 72 ~~~~rf~~Pv~~Gdtl~~~~ 91 (127)
T cd03453 72 SFGVRFTKPVPVPDTLTCTG 91 (127)
T ss_pred EEEEEECCcCcCCCEEEEEE
Confidence 44568899999999999854
No 58
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=23.16 E-value=1.1e+02 Score=31.25 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=26.8
Q ss_pred cCccccCceeeeC---CeeEEEEEEeeEEEEEEecC
Q 009792 388 SKPFSLGDTIKAG---SVEGQVVEMGLTTTTLLSAE 420 (525)
Q Consensus 388 ~~pf~IGD~I~i~---g~~G~VeeIgl~sT~lrt~D 420 (525)
+.+.-+||||.+. +..|.|++|--|.+.+...+
T Consensus 32 ~~~~~vGD~V~~~~~~~~~~~i~~i~~R~~~l~R~~ 67 (287)
T cd01854 32 GIKPVVGDWVEVEPDDDGEGVIVRVLPRKNLLSRPA 67 (287)
T ss_pred CCCccCCCEEEEEecCCCcEEEEEEECCCceEEccC
Confidence 3478999999984 35699999999999987655
No 59
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=23.08 E-value=91 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=18.8
Q ss_pred ccccCceeee-----CCeeEEEEEEeeE
Q 009792 390 PFSLGDTIKA-----GSVEGQVVEMGLT 412 (525)
Q Consensus 390 pf~IGD~I~i-----~g~~G~VeeIgl~ 412 (525)
+++.||.|.+ -|-.|+|.+|...
T Consensus 6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~~ 33 (76)
T PRK12281 6 KVKKGDMVKVIAGDDKGKTGKVLAVLPK 33 (76)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEcC
Confidence 7899999998 3588999888643
No 60
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=22.76 E-value=1.6e+02 Score=26.51 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.4
Q ss_pred eeeecCccccCceeeeCC
Q 009792 384 SMQFSKPFSLGDTIKAGS 401 (525)
Q Consensus 384 ~I~~~~pf~IGD~I~i~g 401 (525)
-+-+.+|..+||.|.+..
T Consensus 82 ~~rf~~PV~~GDtl~~~~ 99 (142)
T cd03452 82 NLRFLEPVYPGDTIQVRL 99 (142)
T ss_pred eEEECCCCCCCCEEEEEE
Confidence 668899999999998754
No 61
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=21.85 E-value=95 Score=26.52 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.4
Q ss_pred eeecCccccCceeeeCCeeEEEE
Q 009792 385 MQFSKPFSLGDTIKAGSVEGQVV 407 (525)
Q Consensus 385 I~~~~pf~IGD~I~i~g~~G~Ve 407 (525)
|.-+.-+++||+|..+...|+|.
T Consensus 21 iV~~GtL~~Gd~iv~G~~~GkVr 43 (95)
T cd03701 21 IVQNGTLKKGDVIVAGGTYGKIR 43 (95)
T ss_pred EEEcCeEecCCEEEECCccceEE
Confidence 56677899999999999999985
No 62
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=21.56 E-value=1.5e+02 Score=26.54 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=18.3
Q ss_pred ccccCceeee-----CCeeEEEEEEe
Q 009792 390 PFSLGDTIKA-----GSVEGQVVEMG 410 (525)
Q Consensus 390 pf~IGD~I~i-----~g~~G~VeeIg 410 (525)
+++.||.|.| .|.+|.|.+|.
T Consensus 41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~ 66 (114)
T TIGR01080 41 PVRKGDKVRIMRGDFKGHEGKVSKVD 66 (114)
T ss_pred eeecCCEEEEecCCCCCCEEEEEEEE
Confidence 8999999998 36899998885
No 63
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=21.40 E-value=2.4e+02 Score=22.79 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=32.6
Q ss_pred cCceeee----CCeeEEEEEEeeEEEEEEecCCcEEEEeCcccc
Q 009792 393 LGDTIKA----GSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFS 432 (525)
Q Consensus 393 IGD~I~i----~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~ 432 (525)
+|.++.+ +.+.|++.++.--+..++.. |+..+|+...+.
T Consensus 20 iG~~vvV~T~~g~v~G~L~~V~pDhIvl~~~-~~~~~IR~~~IV 62 (66)
T PF10842_consen 20 IGQRVVVQTTRGSVRGILVDVKPDHIVLEEN-GTPFFIRIAQIV 62 (66)
T ss_pred cCCEEEEEEcCCcEEEEEEeecCCEEEEEeC-CcEEEEEeeeEE
Confidence 6888887 45899999999999988887 888889887764
No 64
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=21.38 E-value=1.7e+02 Score=24.97 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=27.1
Q ss_pred CeeEEEEEEeeEEEEEEecCCcEEEEeCcc
Q 009792 401 SVEGQVVEMGLTTTTLLSAEKFPVIVPNSM 430 (525)
Q Consensus 401 g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~ 430 (525)
|.+|.|.+=+-.+-+|.+.+|+..+||=+.
T Consensus 28 Gi~GiVv~ET~nt~~I~t~~~~~~~IpK~~ 57 (92)
T smart00538 28 GIEGIVVDETRNTLKIETKEGRVKTVPKDG 57 (92)
T ss_pred CcEEEEEEeeeeEEEEEeCCCcEEEEECCC
Confidence 699999999999999999999999999764
No 65
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=21.15 E-value=7.8e+02 Score=25.77 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhCcchHHHHHHHHHHHHHHH
Q 009792 326 KMLALDRISSVGLFVIGLMALAE----ACGVAVQSILTVGGIGGVATA 369 (525)
Q Consensus 326 ~~~~l~~i~~iii~ii~iiiiL~----~lGv~~~~lLa~lGi~gvaig 369 (525)
..+.+....++.+|+++..+++. ..|.|+..++...++.+..++
T Consensus 178 ~~~a~~hT~~I~~~v~~~~l~~~~~i~~~G~dl~~~l~~~~~~~plia 225 (298)
T PF11449_consen 178 LQKALQHTLFIFVWVFVAFLALELVIEFIGEDLAALLSGNGILQPLIA 225 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhCchHHHHHH
Confidence 44566677777777777665553 458888888877776554443
No 66
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=21.09 E-value=1.1e+02 Score=29.02 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=28.7
Q ss_pred cccCceeeeC---CeeE--EEEEEeeEEEEE--EecCCcEEEEeCc
Q 009792 391 FSLGDTIKAG---SVEG--QVVEMGLTTTTL--LSAEKFPVIVPNS 429 (525)
Q Consensus 391 f~IGD~I~i~---g~~G--~VeeIgl~sT~l--rt~Dg~~v~IPNs 429 (525)
++.||...+. ...| +|+++.....++ .+.||+.+..|.-
T Consensus 72 ~~~gd~~~~~~rnqp~G~v~V~~V~~~p~~~~~~~~dG~v~~~~dP 117 (168)
T PF14221_consen 72 IKEGDKTNIVIRNQPAGQVTVKDVQVLPRTVVVPQPDGSVVEAPDP 117 (168)
T ss_pred ccCCCEEEEeccCccccceEEEEEEEEccceEEECCCCeEEEccCC
Confidence 8899999873 3566 888887766554 4578998877764
No 67
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=20.54 E-value=2.1e+02 Score=22.50 Aligned_cols=41 Identities=22% Similarity=0.474 Sum_probs=28.3
Q ss_pred cccCceeee------CCeeEEEEEEeeEEEEEE-ecCCcEEEEeCcccc
Q 009792 391 FSLGDTIKA------GSVEGQVVEMGLTTTTLL-SAEKFPVIVPNSMFS 432 (525)
Q Consensus 391 f~IGD~I~i------~g~~G~VeeIgl~sT~lr-t~Dg~~v~IPNs~l~ 432 (525)
|.+||.|++ ++.+=+|..+|.-. +|+ +.-|+.+.+|-+.|-
T Consensus 2 ~~vgDiV~mKK~HPCG~~~Wei~R~GaDi-kikC~gCg~~imlpR~~fe 49 (57)
T PF06107_consen 2 YEVGDIVEMKKPHPCGSNEWEIIRIGADI-KIKCLGCGRQIMLPRSKFE 49 (57)
T ss_pred ccCCCEEEEcCCCCCCCCEEEEEEccCcE-EEEECCCCCEEEEeHHHHH
Confidence 789999999 34555677666543 333 456888999977664
Done!