Query 009792
Match_columns 525
No_of_seqs 290 out of 2070
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 100.0 7.4E-40 2.5E-44 332.0 24.1 222 284-512 26-248 (286)
2 3udc_A Small-conductance mecha 100.0 1.2E-34 3.9E-39 293.7 29.6 184 325-512 63-247 (285)
3 2e6z_A Transcription elongatio 76.9 2.1 7.1E-05 32.5 3.5 44 388-431 5-56 (59)
4 1nz9_A Transcription antitermi 73.7 8.3 0.00028 28.6 6.2 37 389-425 3-47 (58)
5 2do3_A Transcription elongatio 64.5 14 0.00048 29.0 5.8 40 387-426 14-59 (69)
6 3mxu_A Glycine cleavage system 60.4 7.8 0.00027 34.7 4.1 85 372-465 49-133 (143)
7 2vv5_A MSCS, small-conductance 54.9 75 0.0026 31.1 10.8 54 203-270 30-83 (286)
8 3cnr_A Type IV fimbriae assemb 53.7 29 0.001 29.7 6.6 24 376-399 26-50 (117)
9 3sgr_A Tandem repeat of amyloi 48.4 10 0.00035 23.1 1.9 17 393-409 6-25 (25)
10 3tx3_A Uncharacterized protein 48.3 1.9E+02 0.0066 27.7 17.1 12 307-318 179-190 (249)
11 3udc_A Small-conductance mecha 46.3 2.1E+02 0.0073 27.7 15.4 65 198-270 18-82 (285)
12 3kfu_F Aspartyl/glutamyl-tRNA( 43.7 2E+02 0.007 30.4 12.3 90 377-476 84-174 (466)
13 3h0l_B Aspartyl/glutamyl-tRNA( 41.6 1.3E+02 0.0045 31.9 10.6 95 377-476 86-181 (478)
14 1q6w_A Monoamine oxidase regul 41.0 98 0.0033 26.9 8.3 46 380-425 96-147 (161)
15 3klr_A Glycine cleavage system 38.0 12 0.0004 32.8 1.5 57 386-443 36-92 (125)
16 3ip4_B Aspartyl/glutamyl-tRNA( 32.6 2.4E+02 0.0082 30.0 10.8 94 377-476 84-178 (483)
17 3mlq_E Transcription-repair co 32.1 68 0.0023 24.9 5.0 43 390-432 2-53 (71)
18 3p8b_B Transcription antitermi 28.1 37 0.0013 30.0 3.2 25 388-412 89-118 (152)
19 3exz_A MAOC-like dehydratase; 27.1 1.2E+02 0.0042 26.2 6.5 43 383-425 84-134 (154)
20 4he6_A Peptidase family U32; u 26.2 31 0.001 27.7 2.1 40 383-424 22-61 (89)
21 2p9r_A Alpha-2-M, alpha-2-macr 23.9 35 0.0012 27.7 2.0 18 383-400 4-22 (102)
22 3hgb_A Glycine cleavage system 22.8 21 0.00072 32.3 0.5 57 386-443 63-119 (155)
23 2cqa_A RUVB-like 2; TIP48, TIP 21.5 16 0.00055 30.4 -0.5 26 389-414 61-86 (95)
24 1iq6_A (R)-hydratase, (R)-spec 20.9 1.3E+02 0.0045 24.7 5.3 41 381-424 78-124 (134)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=100.00 E-value=7.4e-40 Score=332.03 Aligned_cols=222 Identities=23% Similarity=0.328 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 009792 284 QYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGI 363 (525)
Q Consensus 284 ~~l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi 363 (525)
.++++++.++++++++|++.+++.+++.+++.+.. .+.+....+.++++++++++++++++..+|++++++++++|+
T Consensus 26 ~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~ 102 (286)
T 2vv5_A 26 SYAVNIVAALAIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA 102 (286)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34677888899999999999999999888776543 366777889999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCC
Q 009792 364 GGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAP 443 (525)
Q Consensus 364 ~gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~ 443 (525)
+|+|+|||+|++++|++||++|++++||++||||+++|.+|+|+||++|+|++|++||+.++|||+.+.+++|+|||+++
T Consensus 103 ~g~aig~a~q~~l~n~~sGi~i~~~~pf~vGD~I~i~g~~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~ 182 (286)
T 2vv5_A 103 AGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP 182 (286)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhcCCccCCCEEEECCEEEEEEEEEeEEEEEEeCCCCEEEechHHHhhCceEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCCccc
Q 009792 444 WRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFL 512 (525)
Q Consensus 444 ~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~~~e 512 (525)
.+|++++++++| +|+++++++ +++.+++||.+. ++|+|.|++.+++++++++++++|+++.++++
T Consensus 183 ~~r~~~~v~v~y~~d~~~v~~~---l~~~~~~~~~vl-~~p~p~v~v~~~~~~~i~~~v~~~~~~~~~~~ 248 (286)
T 2vv5_A 183 VRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL-KDREMTVRLNELGASSINFVVRVWSNSGDLQN 248 (286)
T ss_dssp EEEEEEEEEECTTSCHHHHHHH---HHHHHHHCTTBC-TTSCEEEEEEEECSSSEEEEEEEEEETTTHHH
T ss_pred cEEEEEEEEEcCCCCHHHHHHH---HHHHHHhCcccc-cCCCCEEEEEEecCCeEEEEEEEEEccchHHH
Confidence 888989999999 588888776 778899999985 56889999999999999999999999865443
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=100.00 E-value=1.2e-34 Score=293.75 Aligned_cols=184 Identities=19% Similarity=0.330 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeE
Q 009792 325 EKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEG 404 (525)
Q Consensus 325 ~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G 404 (525)
+....+.++++++++++++++++..+|++++++++++|++|+|+|||+|++++|++||++|+++|||++||||+++|.+|
T Consensus 63 tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i~~~~G 142 (285)
T 3udc_A 63 TLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISG 142 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEECCEEE
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCC
Q 009792 405 QVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKE 483 (525)
Q Consensus 405 ~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~ 483 (525)
+|+||++|+|++|++||+.++|||+.+. .+.|||+... +..+++.++| +|.+++.++.+++.+.+.+++... .++
T Consensus 143 ~V~~I~l~~T~i~t~d~~~v~iPN~~l~--~i~N~s~~~~-~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~~-~~~ 218 (285)
T 3udc_A 143 TVEEIGLRVTKIRGFSDGLHIIPNGEIK--MVTNLTKDSM-MAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDDL-IEG 218 (285)
T ss_dssp EEEEECSSEEEEEETTTEEEEEEGGGCS--CEEECSSSCE-EEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSSB-SSC
T ss_pred EEEEeeeeEEEEecCCCCEEEecccccc--cccccCCCCc-eEEEEEeeecCCCHHHHHHHHHHHHHHHHhccccc-ccC
Confidence 9999999999999999999999999993 5999998654 4557889998 588998888766655444433332 345
Q ss_pred ccEEEEEeeCCCeeEEEEEEEEecCCccc
Q 009792 484 APYCFLSQIESSFAELNVGCNLKQMVKFL 512 (525)
Q Consensus 484 ~p~V~v~~~~~s~i~i~V~~~~k~~~~~e 512 (525)
+|.+.+.+++++++++++++|+++.++++
T Consensus 219 ~~~v~~~~~~~s~i~~~v~~~~~~~~~~~ 247 (285)
T 3udc_A 219 PTVLGITDMQDSKLVIMVYAKTQPMQKWA 247 (285)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESTTCHHH
T ss_pred cccccccccCCCEEEEEEEEEECcchHHH
Confidence 68899999999999999999998876554
No 3
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.88 E-value=2.1 Score=32.46 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=29.5
Q ss_pred cCccccCceeee-----CCeeEEEEEEeeEEEEEEe---cCCcEEEEeCccc
Q 009792 388 SKPFSLGDTIKA-----GSVEGQVVEMGLTTTTLLS---AEKFPVIVPNSMF 431 (525)
Q Consensus 388 ~~pf~IGD~I~i-----~g~~G~VeeIgl~sT~lrt---~Dg~~v~IPNs~l 431 (525)
.-.|.+||.|++ .|..|.|++++--..++.- .-.+.+-+|++.+
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~~fg~~tpvel~~~qv 56 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQEL 56 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEECCSSCCSCEEEETTTE
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEEecCCCceEEEcHHHE
Confidence 347999999999 3599999999865444332 1134566666554
No 4
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=73.68 E-value=8.3 Score=28.65 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=26.1
Q ss_pred CccccCceeee-----CCeeEEEEEEeeE---EEEEEecCCcEEE
Q 009792 389 KPFSLGDTIKA-----GSVEGQVVEMGLT---TTTLLSAEKFPVI 425 (525)
Q Consensus 389 ~pf~IGD~I~i-----~g~~G~VeeIgl~---sT~lrt~Dg~~v~ 425 (525)
-+|++||.|++ .|.+|.|++++.. .+...+.-|+.+-
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~ 47 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETP 47 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEE
Confidence 47899999999 3699999999752 3334455555433
No 5
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=64.54 E-value=14 Score=28.97 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=27.0
Q ss_pred ecCccccCceeee-----CCeeEEEEEEeeEEEEE-EecCCcEEEE
Q 009792 387 FSKPFSLGDTIKA-----GSVEGQVVEMGLTTTTL-LSAEKFPVIV 426 (525)
Q Consensus 387 ~~~pf~IGD~I~i-----~g~~G~VeeIgl~sT~l-rt~Dg~~v~I 426 (525)
+.|-|++||.|++ .|..|.|.++.=-.+.+ -+..++.+.|
T Consensus 14 LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V 59 (69)
T 2do3_A 14 LRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKV 59 (69)
T ss_dssp CCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEESSSCSEEEE
T ss_pred ceeeccCCCeEEEeccEEcCceEEEEEEeCCEEEEEeCCCCCEEEE
Confidence 4588999999999 46899999986433333 3334444444
No 6
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=60.37 E-value=7.8 Score=34.73 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=57.5
Q ss_pred hHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEE
Q 009792 372 SRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRI 451 (525)
Q Consensus 372 aqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I 451 (525)
+|+.++++ .+.+=| ++||.|+-++.-|.||....-+-..--.+|+++-|-....-+-...|-...+.-++ +
T Consensus 49 Aq~~LGdI-----vfVelP-~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl---~ 119 (143)
T 3mxu_A 49 AQEQLGDL-----VFIDLP-QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWL---W 119 (143)
T ss_dssp HHHHHCSE-----EEEECC-CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCC---E
T ss_pred HHhhcCCe-----EEEEcC-CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeE---E
Confidence 34444444 355556 99999999999999999998887777788988877555555555677666543333 2
Q ss_pred eeecCCchhHHHHH
Q 009792 452 PMQIDDLDKVPQIS 465 (525)
Q Consensus 452 ~I~~~d~ekv~~I~ 465 (525)
.+..+|.++++.++
T Consensus 120 ki~~~d~~el~~Ll 133 (143)
T 3mxu_A 120 KMTVQDETQLERLL 133 (143)
T ss_dssp EEECSCTHHHHHHH
T ss_pred EEEECCHHHHHhcC
Confidence 33345666555553
No 7
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=54.94 E-value=75 Score=31.05 Aligned_cols=54 Identities=13% Similarity=0.200 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccccCCcccccccchHHHHHHhHHHHHHHHHHHHHH
Q 009792 203 PVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270 (525)
Q Consensus 203 ~l~l~l~~~ll~~lll~~llrrl~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~p~~ll~~ll~~~ 270 (525)
.++.++++.+++|++.+.+.+.+.+...+. ..+..+...+.+.++++++++++.
T Consensus 30 ~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~~i~~i~~~ 83 (286)
T 2vv5_A 30 NIVAALAIIIVGLIIARMISNAVNRLMISR--------------KIDATVADFLSALVRYGIIAFTLI 83 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666554444444433321 122344555666666665555443
No 8
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=53.71 E-value=29 Score=29.75 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=19.9
Q ss_pred HhhHh-hheeeeecCccccCceeee
Q 009792 376 LGNVL-SGLSMQFSKPFSLGDTIKA 399 (525)
Q Consensus 376 l~N~~-aGi~I~~~~pf~IGD~I~i 399 (525)
..|+= +|++|-.++|+++||.|.+
T Consensus 26 ~~~is~GGlFI~T~~~~~~G~~V~l 50 (117)
T 3cnr_A 26 MPFVKGGGIFVPTPKRYMLGDEVFL 50 (117)
T ss_dssp ETTBTTCEEEEECCSCCCTTCEEEE
T ss_pred hcccCCCeEEEeeCCccCCCCEEEE
Confidence 34444 6799999999999999987
No 9
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=48.43 E-value=10 Score=23.08 Aligned_cols=17 Identities=53% Similarity=0.929 Sum_probs=13.4
Q ss_pred cCceeeeCC---eeEEEEEE.
Q 009792 393 LGDTIKAGS---VEGQVVEM. 409 (525)
Q Consensus 393 IGD~I~i~g---~~G~VeeI. 409 (525)
.||.|+++| +-|.|.|+
T Consensus 6 lgdvievggklkvlgdviev. 25 (25)
T 3sgr_A 6 LGDVIEVGGKLKVLGDVIEVx 26 (26)
T ss_dssp EEEEEEETTEEEEEEEEEEC.
T ss_pred eeeeeeeCcEEEEeeeEEeC.
Confidence 589999988 67887763
No 10
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=48.28 E-value=1.9e+02 Score=27.74 Aligned_cols=12 Identities=0% Similarity=0.086 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhc
Q 009792 307 TNVFTRAMASQS 318 (525)
Q Consensus 307 ~~~~~~~~~~~~ 318 (525)
....+..+.+++
T Consensus 179 ~ey~d~~~~r~~ 190 (249)
T 3tx3_A 179 IQYLDYPFDNHK 190 (249)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 345555555543
No 11
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=46.35 E-value=2.1e+02 Score=27.66 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccccCCcccccccchHHHHHHhHHHHHHHHHHHHHH
Q 009792 198 RDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270 (525)
Q Consensus 198 ~~~l~~l~l~l~~~ll~~lll~~llrrl~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~p~~ll~~ll~~~ 270 (525)
...++.++.++++.++++.+.+.+.+++.+...+... ..+....+.+...++..++++++++++.
T Consensus 18 ~~~~~~il~~lii~~i~~~i~~~l~~~~~~~~~~~~~--------~~~~~~~~tl~~~~~~~~~~~i~~~~~~ 82 (285)
T 3udc_A 18 VKFLLDVLKILIIAFIGIKFADFLIYRFYKLYSKSKI--------QLPQRKIDTLTSLTKNAVRYIIYFLAGA 82 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--------SCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666677777777666554211 1112222345555666666666555444
No 12
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=43.74 E-value=2e+02 Score=30.36 Aligned_cols=90 Identities=7% Similarity=0.175 Sum_probs=69.0
Q ss_pred hhHhhheeee-ecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec
Q 009792 377 GNVLSGLSMQ-FSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI 455 (525)
Q Consensus 377 ~N~~aGi~I~-~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~ 455 (525)
.++=.|.||. ++.|+-.|=+|+++| ..|++....+....|+.+.-+ +.....+.|.+---+++.-.=+.
T Consensus 84 pDlPkGYQITQ~~~PIa~~G~l~i~g-----k~I~I~rihLEEDaGK~ih~~-----~~slvD~NRaGvPLiEIVTePDi 153 (466)
T 3kfu_F 84 PDLPKNYQISQYDLPLGRGGSLPLGE-----RRVRIKRLHLEEDAGKSLHLE-----GRTLLDLNRAGSPLIELVTEPDL 153 (466)
T ss_dssp TTCTTSEEEECSSSCSEEECEEEETT-----EEEEEEEEEEEECCCEEEEET-----TEEEEETTSTTCEEEEEEECTTB
T ss_pred CCCCcCcccccccCCEecCcEEEECC-----eEEeeEEEEecccccccccCC-----CceEEecCCCCCcEEEEecCCCC
Confidence 3445788887 578999999999955 689999999999999988763 34577888887655554333344
Q ss_pred CCchhHHHHHHHHHHHHHcCC
Q 009792 456 DDLDKVPQISDDVKSMLRSNT 476 (525)
Q Consensus 456 ~d~ekv~~I~~~i~e~L~~~p 476 (525)
.+++++.+..++++..++...
T Consensus 154 rspeEA~ayl~~Lr~ilrylg 174 (466)
T 3kfu_F 154 KTPEEARLFLQRIQALVQTLG 174 (466)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhC
Confidence 688899999899888888754
No 13
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=41.62 E-value=1.3e+02 Score=31.94 Aligned_cols=95 Identities=11% Similarity=0.181 Sum_probs=71.9
Q ss_pred hhHhhheeee-ecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec
Q 009792 377 GNVLSGLSMQ-FSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI 455 (525)
Q Consensus 377 ~N~~aGi~I~-~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~ 455 (525)
.++=.|.||. ++.|+-.|=+|++.-..|....|++....+....|+.+.-+ +.....+.|.+---+.+.-.=+.
T Consensus 86 pDlPkgYQITQ~~~Pia~~G~l~i~~~~g~~k~I~I~rihlEEDagK~~h~~-----~~slvD~NRaGvPLiEIVTePd~ 160 (478)
T 3h0l_B 86 PDLPKGYQISQYEKPLATNGWVELNLPNGEKKKVRIRRLHIEEDAGKNIHEG-----DKTLVDLNRAGTPLMEIVTEPDI 160 (478)
T ss_dssp TTCTTSEEEEESSSCSEEEEEEEEECTTSCEEEEEEEEEEEEECCCEEEEET-----TEEEEECSSTTCEEEEEEECTTB
T ss_pred CCCCcccchhccccCeecCCEEEEEecCCceEEEeeEEEEecccccccccCC-----CceEEecCCCCCceEEEecCCCC
Confidence 3455788887 67899999999996444656789999999999999988763 34577888877655554333344
Q ss_pred CCchhHHHHHHHHHHHHHcCC
Q 009792 456 DDLDKVPQISDDVKSMLRSNT 476 (525)
Q Consensus 456 ~d~ekv~~I~~~i~e~L~~~p 476 (525)
.+++++.+..++++..++...
T Consensus 161 ~s~eeA~a~~~~L~~ilr~lg 181 (478)
T 3h0l_B 161 RTPEEARLFLEKLRNIMRYAG 181 (478)
T ss_dssp CSHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhC
Confidence 688899888888888888754
No 14
>1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus} SCOP: d.38.1.4
Probab=41.01 E-value=98 Score=26.86 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=29.1
Q ss_pred hhheeeeecCccccCceeeeCCeeEEEE------EEeeEEEEEEecCCcEEE
Q 009792 380 LSGLSMQFSKPFSLGDTIKAGSVEGQVV------EMGLTTTTLLSAEKFPVI 425 (525)
Q Consensus 380 ~aGi~I~~~~pf~IGD~I~i~g~~G~Ve------eIgl~sT~lrt~Dg~~v~ 425 (525)
..|+-+-+.+|..+||.+.+....-.+. .+-...+++.+.||+.+.
T Consensus 96 ~~~~~~rF~~PV~~Gd~l~~~~~v~~~~~~~~~~~~v~~~~~~~n~~g~~v~ 147 (161)
T 1q6w_A 96 FGIKDVRFLRPVFIGDTIAASAEVVEKQDFDEKSGVVTYKLEVKNQRGELVL 147 (161)
T ss_dssp EEEEEEEECSCCBTTCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEE
T ss_pred ceeEEEEEecCCCCCCEEEEEEEEEEEEecCCCceEEEEEEEEEeCCCCEEE
Confidence 4677788999999999999854322222 122233555666776553
No 15
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=37.96 E-value=12 Score=32.79 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=44.2
Q ss_pred eecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCC
Q 009792 386 QFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAP 443 (525)
Q Consensus 386 ~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~ 443 (525)
+.+=| ++||.|+-++.-|.||.+..-+-..--.+|+++-|-....-+-...|-...+
T Consensus 36 ~velp-~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~ 92 (125)
T 3klr_A 36 YCSLP-EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYE 92 (125)
T ss_dssp EEECC-CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTT
T ss_pred EEEeC-CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCC
Confidence 45556 9999999999999999999888777778898887765555555667766543
No 16
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=32.60 E-value=2.4e+02 Score=29.98 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=71.3
Q ss_pred hhHhhheeee-ecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec
Q 009792 377 GNVLSGLSMQ-FSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI 455 (525)
Q Consensus 377 ~N~~aGi~I~-~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~ 455 (525)
.++=.|.||. ++.|+-.|=+|++... |.-..|++....+....|+.+.-.. .....+.|.+---+.+.-.=+.
T Consensus 84 pDlPkgYQITQ~~~Pia~~G~l~i~~~-~~~k~I~I~rihlEEDagK~~h~~~-----~slvD~NRaGvPLiEIVTePd~ 157 (483)
T 3ip4_B 84 PDNPKAYQISQFDQPIGENGYIDIEVD-GETKRIGITRLHMEEDAGKSTHKGE-----YSLVDLNRQGTPLIEIVSEPDI 157 (483)
T ss_dssp TTBTTSEEEECSSSCSEEEEEEEECSS-SSCEEEEEEEEEEEECCCEEEEETT-----EEEEECTTTTCEEEEEEECSCB
T ss_pred CCCCcCccccccccCeecCCEEEEEec-CceEEEeEEEEeecchhhhhccCCC-----ceEEecCCCCCceEEEecCCCC
Confidence 4555788887 6789999999998642 3336899999999999999887643 4578888887665554444445
Q ss_pred CCchhHHHHHHHHHHHHHcCC
Q 009792 456 DDLDKVPQISDDVKSMLRSNT 476 (525)
Q Consensus 456 ~d~ekv~~I~~~i~e~L~~~p 476 (525)
.+++++.+..++++..++...
T Consensus 158 ~s~eeA~a~~~~L~~ilr~lg 178 (483)
T 3ip4_B 158 RSPKEAYAYLEKLRSIIQYTG 178 (483)
T ss_dssp CSHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhC
Confidence 688999999899888888754
No 17
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=32.07 E-value=68 Score=24.91 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=16.5
Q ss_pred ccccCceeeeCC-eeEEEEEEeeEE--------EEEEecCCcEEEEeCcccc
Q 009792 390 PFSLGDTIKAGS-VEGQVVEMGLTT--------TTLLSAEKFPVIVPNSMFS 432 (525)
Q Consensus 390 pf~IGD~I~i~g-~~G~VeeIgl~s--------T~lrt~Dg~~v~IPNs~l~ 432 (525)
||++||+|.-.. --|+++.|.-+. -+|+=.++..++||-..+-
T Consensus 2 ~l~~GD~VVh~~hGiG~~~gi~~~~v~g~~~ey~~l~y~~~~~l~VPv~~~~ 53 (71)
T 3mlq_E 2 PHMPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRYKGEGKLYLPVEQLP 53 (71)
T ss_dssp --------------CEEEEEEEEEEETTEEEEEEEEEETTTEEEEEESSSCC
T ss_pred cCCCCCEEEECCCeeEEEeEEEEEEeCCeeEEEEEEEECCCCEEEEEhhhhc
Confidence 799999998744 356666554432 3344345557777776654
No 18
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=28.06 E-value=37 Score=30.01 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=20.6
Q ss_pred cCccccCceeee-----CCeeEEEEEEeeE
Q 009792 388 SKPFSLGDTIKA-----GSVEGQVVEMGLT 412 (525)
Q Consensus 388 ~~pf~IGD~I~i-----~g~~G~VeeIgl~ 412 (525)
...|++||+|++ .|..|.|++++..
T Consensus 89 ~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 89 VSGLEPGDLVEVIAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTTCCTTCEEEECSSTTTTCEEEEEEEETT
T ss_pred cccCCCCCEEEEeeecCCCCEEEEEEEeCC
Confidence 357999999999 3699999999743
No 19
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=27.09 E-value=1.2e+02 Score=26.22 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=26.3
Q ss_pred eeeeecCccccCceeeeCCeeEEEEE--------EeeEEEEEEecCCcEEE
Q 009792 383 LSMQFSKPFSLGDTIKAGSVEGQVVE--------MGLTTTTLLSAEKFPVI 425 (525)
Q Consensus 383 i~I~~~~pf~IGD~I~i~g~~G~Vee--------Igl~sT~lrt~Dg~~v~ 425 (525)
+-+-+.+|+.+||.+.+....-.+.+ +-...+++.+.||+.+.
T Consensus 84 ~~~rF~~PV~~GD~L~~~~~v~~~~~~~s~~~~~~v~~~~~~~nq~Ge~V~ 134 (154)
T 3exz_A 84 TELSWPNPTRPGDELHVETTVLAITPSKSRPDRAIVTCQSDTLNQRGEVVQ 134 (154)
T ss_dssp EEEECSSCCCTTCEEEEEEEEEEEEECSSCTTEEEEEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCCCCEEEEEEEEEEEEecccCCCceEEEEEEEEEeCCCCEEE
Confidence 36788999999999987542222211 11234455677777654
No 20
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=26.15 E-value=31 Score=27.70 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=25.6
Q ss_pred eeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEE
Q 009792 383 LSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPV 424 (525)
Q Consensus 383 i~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v 424 (525)
..+-..++|.+||.|++=+-.|.-....+ +.+.+.+|+.+
T Consensus 22 ~~ie~rN~f~~GD~iEi~~P~g~~~~~~v--~~m~d~~G~~i 61 (89)
T 4he6_A 22 ATVQQRNHFRPGDEVEFFGPEIENFTQVI--EKIWDEDGNEL 61 (89)
T ss_dssp EEEEESSCBCTTCEEEEESTTSCCEEEEC--CCEEETTSCEE
T ss_pred EEEEEcCCcCCCCEEEEEcCCCCcEEEEe--HHeEcCCCCEe
Confidence 45667889999999998443442222222 45677777755
No 21
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=23.85 E-value=35 Score=27.74 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.5
Q ss_pred eeeeecCc-cccCceeeeC
Q 009792 383 LSMQFSKP-FSLGDTIKAG 400 (525)
Q Consensus 383 i~I~~~~p-f~IGD~I~i~ 400 (525)
++|..+|| |++||.|.+.
T Consensus 4 ~fi~tDr~iYrPGetV~~~ 22 (102)
T 2p9r_A 4 VFVQTDKSIYKPGQTVKFR 22 (102)
T ss_dssp EEEEESCSEECTTCEEEEE
T ss_pred EEEECCCcccCCCCEEEEE
Confidence 67899998 8999999863
No 22
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=22.82 E-value=21 Score=32.31 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=44.6
Q ss_pred eecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCC
Q 009792 386 QFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAP 443 (525)
Q Consensus 386 ~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~ 443 (525)
+.+=| ++||.|+-++.-|.||....-+-..--.+|+++-|-....-+-...|-...+
T Consensus 63 fVeLP-~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg 119 (155)
T 3hgb_A 63 FVQLP-VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYG 119 (155)
T ss_dssp EEECC-CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTT
T ss_pred EEEcC-CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCC
Confidence 55556 9999999999999999999988877778898887765555555567766554
No 23
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=21.49 E-value=16 Score=30.42 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=21.7
Q ss_pred CccccCceeeeCCeeEEEEEEeeEEE
Q 009792 389 KPFSLGDTIKAGSVEGQVVEMGLTTT 414 (525)
Q Consensus 389 ~pf~IGD~I~i~g~~G~VeeIgl~sT 414 (525)
.-+++||.|.++...|.|.++|=-.+
T Consensus 61 ekV~~GDVI~Id~~sG~V~klGRs~~ 86 (95)
T 2cqa_A 61 DKVQAGDVITIDKATGKISKLGRSFT 86 (95)
T ss_dssp TTCCTTSEEEEETTTTEEEEEECCCC
T ss_pred cCceeCCEEEEEccCCEEEEEEEeec
Confidence 35789999999999999999885433
No 24
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=20.91 E-value=1.3e+02 Score=24.69 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=26.0
Q ss_pred hheeeeecCccccCceeeeCCeeEEEEEE------eeEEEEEEecCCcEE
Q 009792 381 SGLSMQFSKPFSLGDTIKAGSVEGQVVEM------GLTTTTLLSAEKFPV 424 (525)
Q Consensus 381 aGi~I~~~~pf~IGD~I~i~g~~G~VeeI------gl~sT~lrt~Dg~~v 424 (525)
+..-+-+.+|..+||.+.+.. +|.++ -...+++.+.+|+.+
T Consensus 78 ~~~~~rf~~Pv~~Gd~l~~~~---~v~~~~~~~~~v~~~~~~~n~~g~~v 124 (134)
T 1iq6_A 78 LGQSLSFKLPVFVGDEVTAEV---EVTALREDKPIATLTTRIFTQGGALA 124 (134)
T ss_dssp EEEEEEECSCCBTTCEEEEEE---EEEEECSSSSEEEEEEEEECTTSCEE
T ss_pred EEEEEEEcCCCCCCCEEEEEE---EEEEEECCCCEEEEEEEEEeCCCCEE
Confidence 456778999999999998743 33332 123344556666654
Done!