BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009793
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 497 bits (1279), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/501 (49%), Positives = 340/501 (67%), Gaps = 13/501 (2%)
Query: 35 PHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNS-SV 93
P L L + +L D A +AS+D+GNI P AVLYPSST D+VAL+ AA ++
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 94 PFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVL 152
P+ IA +GRGHS+ GQA A GGVVV M +L + I V + G Y D GEQ+WIDVL
Sbjct: 77 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVL 136
Query: 153 NATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCS 212
A+L G+AP SWTDYLYLTVGGTLSNAGISGQ FR+GPQISNV E+DV+TG GE++TCS
Sbjct: 137 RASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS 196
Query: 213 ALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLIS--- 269
N++LF A LGGLGQFG+ITRARIA+EPAP R +WVR++Y+DF++FS DQE L +
Sbjct: 197 KQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRP 256
Query: 270 MNGRRQKQALDYLEGTLIMDQG-SLDNWRSSFFPPSDHPKIISQV--KTHAIIYCLEVAK 326
G + Y+EG++ ++Q + D + FF +D +I++ + +Y +E
Sbjct: 257 GGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATL 316
Query: 327 YYDD--HTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVP 384
YD+ + + +EL ++ LSY+ GF F++DV+Y FL+RV E+ L GLW VP
Sbjct: 317 NYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGLWRVP 376
Query: 385 HPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFY 444
HPWLN+F+P+SRI+DF++GVF+ I+ +I GP++VYP+N++ WDD MSA P EDVFY
Sbjct: 377 HPWLNMFVPRSRIADFDRGVFKGILQGTDI-VGPLIVYPLNKSMWDDGMSAATPSEDVFY 435
Query: 445 TVGFLHSS-GFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFG-SKWNTF 502
V L SS ++ +QN+ IL+FC+ AGI+ K YL H ++ +W++HFG +KWN F
Sbjct: 436 AVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRF 495
Query: 503 AQRKAHFDPKMILSPGQRIFN 523
+ K +DPK +LSPGQ IFN
Sbjct: 496 VEMKNKYDPKRLLSPGQDIFN 516
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/501 (49%), Positives = 340/501 (67%), Gaps = 13/501 (2%)
Query: 35 PHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNS-SV 93
P L L + +L D A +AS+D+GNI P AVLYPSST D+VAL+ AA ++
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 94 PFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVL 152
P+ IA +GRGHS+ GQA A GGVVV M +L + I V + G Y D GEQ+WIDVL
Sbjct: 77 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVL 136
Query: 153 NATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCS 212
A+L G+AP SWTDYLYLTVGGTLSNAGISGQ FR+GPQISNV E+DV+TG GE++TCS
Sbjct: 137 RASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS 196
Query: 213 ALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLIS--- 269
N++LF A LGGLGQFG+ITRARIA+EPAP R +WVR++Y+DF++FS DQE L +
Sbjct: 197 KQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRP 256
Query: 270 MNGRRQKQALDYLEGTLIMDQG-SLDNWRSSFFPPSDHPKIISQV--KTHAIIYCLEVAK 326
G + Y+EG++ ++Q + D + FF +D +I++ + +Y +E
Sbjct: 257 GGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATL 316
Query: 327 YYDD--HTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVP 384
YD+ + + +EL ++ LSY+ GF F++DV+Y FL+RV E+ L GLW VP
Sbjct: 317 NYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVP 376
Query: 385 HPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFY 444
HPWLN+F+P+SRI+DF++GVF+ I+ +I GP++VYP+N++ WDD MSA P EDVFY
Sbjct: 377 HPWLNMFVPRSRIADFDRGVFKGILQGTDI-VGPLIVYPLNKSMWDDGMSAATPSEDVFY 435
Query: 445 TVGFLHSS-GFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFG-SKWNTF 502
V L SS ++ +QN+ IL+FC+ AGI+ K YL H ++ +W++HFG +KWN F
Sbjct: 436 AVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRF 495
Query: 503 AQRKAHFDPKMILSPGQRIFN 523
+ K +DPK +LSPGQ IFN
Sbjct: 496 VEMKNKYDPKRLLSPGQDIFN 516
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/501 (49%), Positives = 339/501 (67%), Gaps = 13/501 (2%)
Query: 35 PHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNS-SV 93
P L L + +L D A +AS+D+GNI P AVLYPSST D+VAL+ AA ++
Sbjct: 35 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGW 94
Query: 94 PFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVL 152
P+ IA +GRGHS+ GQA A GGVVV M +L + I V + G Y D GEQ+WIDVL
Sbjct: 95 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVL 154
Query: 153 NATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCS 212
A+L G+AP SWTDYLYLTVGGTLSNAGISGQ FR+GPQISNV E+DV+TG GE++TCS
Sbjct: 155 RASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS 214
Query: 213 ALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLIS--- 269
N++LF A LGGLGQFG+ITRARIA+EPAP R +WVR +Y+DF++FS DQE L +
Sbjct: 215 KQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRP 274
Query: 270 MNGRRQKQALDYLEGTLIMDQG-SLDNWRSSFFPPSDHPKIISQV--KTHAIIYCLEVAK 326
G + Y+EG++ ++Q + D + FF +D +I++ + +Y +E
Sbjct: 275 GGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATL 334
Query: 327 YYDD--HTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVP 384
YD+ + + +EL ++ LSY+ GF F++DV+Y FL+RV E+ L GLW VP
Sbjct: 335 NYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVP 394
Query: 385 HPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFY 444
HPWLN+F+P+SRI+DF++GVF+ I+ +I GP++VYP+N++ WDD MSA P EDVFY
Sbjct: 395 HPWLNMFVPRSRIADFDRGVFKGILQGTDI-VGPLIVYPLNKSMWDDGMSAATPSEDVFY 453
Query: 445 TVGFLHSS-GFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFG-SKWNTF 502
V L SS ++ +QN+ IL+FC+ AGI+ K YL H ++ +W++HFG +KWN F
Sbjct: 454 AVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRF 513
Query: 503 AQRKAHFDPKMILSPGQRIFN 523
+ K +DPK +LSPGQ IFN
Sbjct: 514 VEMKNKYDPKRLLSPGQDIFN 534
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/501 (49%), Positives = 340/501 (67%), Gaps = 13/501 (2%)
Query: 35 PHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNS-SV 93
P L L + +L D A +AS+D+GNI P AVLYPSST D+VAL+ AA ++
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 94 PFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVL 152
P+ IA +GRGHS+ GQA A GGVVV M +L + I V + G Y D GEQ+WIDVL
Sbjct: 77 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVL 136
Query: 153 NATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCS 212
A+L G+AP SWT+YLYLTVGGTLSNAGISGQ FR+GPQISNV E+DV+TG GE++TCS
Sbjct: 137 RASLARGVAPRSWTEYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS 196
Query: 213 ALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLIS--- 269
N++LF A LGGLGQFG+ITRARIA+EPAP R +WVR++Y+DF++FS DQE L +
Sbjct: 197 KQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRP 256
Query: 270 MNGRRQKQALDYLEGTLIMDQG-SLDNWRSSFFPPSDHPKIISQV--KTHAIIYCLEVAK 326
G + Y+EG++ ++Q + D + FF +D +I++ + +Y +E
Sbjct: 257 GGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATL 316
Query: 327 YYDD--HTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVP 384
YD+ + + +EL ++ LSY+ GF F++DV+Y FL+RV E+ L GLW VP
Sbjct: 317 NYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVP 376
Query: 385 HPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFY 444
HPWLN+F+P+SRI+DF++GVF+ I+ +I GP++VYP+N++ WDD MSA P EDVFY
Sbjct: 377 HPWLNMFVPRSRIADFDRGVFKGILQGTDI-VGPLIVYPLNKSMWDDGMSAATPSEDVFY 435
Query: 445 TVGFLHSS-GFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFG-SKWNTF 502
V L SS ++ +QN+ IL+FC+ AGI+ K YL H ++ +W++HFG +KWN F
Sbjct: 436 AVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRF 495
Query: 503 AQRKAHFDPKMILSPGQRIFN 523
+ K +DPK +LSPGQ IFN
Sbjct: 496 VEMKNKYDPKRLLSPGQDIFN 516
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/501 (49%), Positives = 339/501 (67%), Gaps = 13/501 (2%)
Query: 35 PHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNS-SV 93
P L L + +L D A +AS+D+GNI P AVLYPSST D+VAL+ AA ++
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 94 PFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVL 152
P+ IA +GRGHS+ GQA A GGVVV M +L + I V + G Y D GEQ+WIDVL
Sbjct: 77 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVL 136
Query: 153 NATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCS 212
A+L G+AP SWTDYLYLTVGGTLSNAGISGQ FR+GPQISNV E+DV+TG GE++TCS
Sbjct: 137 RASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS 196
Query: 213 ALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISM-- 270
N++LF A LGGLGQFG+ITRARIA+EPAP R +WVR++Y+DF++FS DQE L +
Sbjct: 197 KQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRP 256
Query: 271 -NGRRQKQALDYLEGTLIMDQG-SLDNWRSSFFPPSDHPKIISQV--KTHAIIYCLEVAK 326
G + Y+EG++ ++Q + D + FF +D +I++ + +Y +E
Sbjct: 257 GGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATL 316
Query: 327 YYDD--HTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVP 384
YD+ + + +EL ++ LSY+ GF F++DV+Y FL+RV E+ L GLW VP
Sbjct: 317 NYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVP 376
Query: 385 HPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFY 444
HPWLN+F+P+SRI+DF++GVF+ I+ +I GP++VYP+N++ WDD MSA P EDVFY
Sbjct: 377 HPWLNMFVPRSRIADFDRGVFKGILQGTDI-VGPLIVYPLNKSMWDDGMSAATPSEDVFY 435
Query: 445 TVGFLHSS-GFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFG-SKWNTF 502
V L SS ++ +QN+ IL+FC+ AGI+ K Y H ++ +W++HFG +KWN F
Sbjct: 436 AVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYAARHTDRSDWVRHFGAAKWNRF 495
Query: 503 AQRKAHFDPKMILSPGQRIFN 523
+ K +DPK +LSPGQ IFN
Sbjct: 496 VEMKNKYDPKRLLSPGQDIFN 516
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/501 (49%), Positives = 339/501 (67%), Gaps = 13/501 (2%)
Query: 35 PHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNS-SV 93
P L L + +L D A +AS+D+GNI P AVLYPSST D+VAL+ AA ++
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 94 PFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVL 152
P+ IA +GRGHS+ GQA A GGVVV M +L + I V + G Y D GEQ+WIDVL
Sbjct: 77 PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVL 136
Query: 153 NATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCS 212
A+L G+AP SWTDYLYLTVGGTLSNAGISGQ FR+GPQISNV E+DV+TG GE++TCS
Sbjct: 137 RASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS 196
Query: 213 ALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLIS--- 269
N++LF A LGGLGQFG+ITRARIA+EPAP R +WVR++Y+DF++FS DQE L +
Sbjct: 197 KQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRP 256
Query: 270 MNGRRQKQALDYLEGTLIMDQG-SLDNWRSSFFPPSDHPKIISQV--KTHAIIYCLEVAK 326
G + Y+EG++ ++Q + D + FF +D +I++ + +Y +E
Sbjct: 257 GGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATL 316
Query: 327 YYDD--HTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVP 384
YD+ + + +EL ++ LSY+ GF F++DV+Y FL+RV E+ L GLW VP
Sbjct: 317 NYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVP 376
Query: 385 HPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFY 444
HPWLN+F+P+SRI+DF++GVF+ I+ +I G ++VYP+N++ WDD MSA P EDVFY
Sbjct: 377 HPWLNMFVPRSRIADFDRGVFKGILQGTDI-VGQLIVYPLNKSMWDDGMSAATPSEDVFY 435
Query: 445 TVGFLHSS-GFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFG-SKWNTF 502
V L SS ++ +QN+ IL+FC+ AGI+ K YL H ++ +W++HFG +KWN F
Sbjct: 436 AVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRF 495
Query: 503 AQRKAHFDPKMILSPGQRIFN 523
+ K +DPK +LSPGQ IFN
Sbjct: 496 VEMKNKYDPKRLLSPGQDIFN 516
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/501 (45%), Positives = 319/501 (63%), Gaps = 29/501 (5%)
Query: 40 TLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAA 99
+L+I + AA A D+G P+AV+ P EDI VKAA S +AA
Sbjct: 33 SLNIQGEILCGGAAADIAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRSD-KLTVAA 91
Query: 100 KGRGHSVRGQAMADGGVVVEMMALKN------YRNGNGITVGSGFYADVAGEQLWIDVLN 153
+G GHS+ GQA A+GG+VV+ Y +G T + DV+G LW DVL
Sbjct: 92 RGNGHSINGQAXAEGGLVVDXSTTAENHFEVGYLSGGDATA----FVDVSGGALWEDVLK 147
Query: 154 ATL-EHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCS 212
+ E+GLAP SWTDYL LTVGGTLSNAG+SGQ FRYGPQ SNV ELDVVTG G+++TCS
Sbjct: 148 RCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCS 207
Query: 213 ALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNG 272
++NSELF++ LGGLGQFGIITRAR+ L+PAP V+W+R++Y++F F++D E+L+S
Sbjct: 208 EIENSELFFSVLGGLGQFGIITRARVLLQPAPDXVRWIRVVYTEFDEFTQDAEWLVS--- 264
Query: 273 RRQKQALDYLEGTLIMDQGS-LDNWRSSFFPPSDH---PKIISQVKTHAIIYCLEVAKYY 328
++ + + DY+EG + ++ ++ W + P DH P + Q +++YCLE+ +Y
Sbjct: 265 QKNESSFDYVEGFVFVNGADPVNGWPTVPLHP-DHEFDPTRLPQ-SCGSVLYCLELGLHY 322
Query: 329 -DDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPW 387
D + ST+ K ++ L L + G FE D+ YV+FL RV+ E + G WE PHPW
Sbjct: 323 RDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPW 382
Query: 388 LNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDE-DVFYTV 446
LNLF+ K I DFN+ VF+++V +N GP LVYP+ R++WDDR S VIP+E ++FY V
Sbjct: 383 LNLFVSKRDIGDFNRTVFKELV--KNGVNGPXLVYPLLRSRWDDRTSVVIPEEGEIFYIV 440
Query: 447 GFLH----SSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTF 502
L + E QN+EI+ +C GI K YLP+++++EEWI+HFG++W+ F
Sbjct: 441 ALLRFVPPCAKVSSVEKXVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRF 500
Query: 503 AQRKAHFDPKMILSPGQRIFN 523
RKA FDP ILSPGQ+IFN
Sbjct: 501 VDRKAXFDPXAILSPGQKIFN 521
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 67 ENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNY 126
+ P + S D+ V+ A ++ +I+ + GH+ G A DGG+V+++ +
Sbjct: 37 QRPSLIARCLSAGDVAKSVRYACDNG--LEISVRSGGHNPNGYATNDGGIVLDLRLM--- 91
Query: 127 RNGNGITVGS-GFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVG--GTLSNAGIS 183
N I + + G A + G + D++ + GLA + ++ VG G N G+
Sbjct: 92 ---NSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTG---MHPKVGFCGLALNGGVG 145
Query: 184 GQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPA 243
T +YG N+ +VT G+++ CS + ELF+A G FG++T + L
Sbjct: 146 FLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYEL 205
Query: 244 PKRV 247
P+++
Sbjct: 206 PRKM 209
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 70 VAVLYPSSTEDIV-ALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRN 128
+VL S E IV A+ +AA + A+G G S A GG+V++M AL +
Sbjct: 32 ASVLSTSDPEVIVRAVTRAAEEGGR--GVIARGLGRSYGDNAQNGGGLVIDMPALNRIHS 89
Query: 129 GNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFR 188
+ T A V+ +QL + A L HGL +TVGG + I G+
Sbjct: 90 IDSGTRLVDVDAGVSLDQL----MKAALPHGLWVPVLPGTRQVTVGGAI-GCDIHGKNHH 144
Query: 189 YGPQISN-VYELDVVTGKGELMTCS-ALKNSELFYAALGGLGQFGIITRARIALEP 242
N V ++++T GE+ + A +S+LF+A +GG G GII RA I + P
Sbjct: 145 SAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLTGIILRATIEMTP 200
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 85/208 (40%), Gaps = 17/208 (8%)
Query: 50 DPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQ 109
DP +++ ++ N+++ + VL P STE++VA+ K A + V + G V GQ
Sbjct: 33 DPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVAL-VPQGGNTGLVGGQ 91
Query: 110 AMADGGVVVEMMALKNYR----NGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASW 165
+G VV+ + R + N ITV +G E+ A L P S
Sbjct: 92 TPHNGEVVISLKRXDKIREIDTSSNTITVEAGAILQRVQEK-------AAEVDRLFPLSL 144
Query: 166 TDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMT-CSALKNSELFYAA- 223
T+GG LS YG ++VV G + S LK Y
Sbjct: 145 GAQGSCTIGGNLSTNAGGTAALAYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLR 204
Query: 224 ---LGGLGQFGIITRARIALEPAPKRVK 248
+G G GIIT A + L P P+ V+
Sbjct: 205 DLFIGAEGTLGIITAATLKLFPKPRAVE 232
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 21/251 (8%)
Query: 68 NPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMA--DGGVVVEM--MAL 123
+P A+ P STEDI A V+ ++ V +I+AKG GHS DG +++E+ M
Sbjct: 42 DPAAIAIPRSTEDIAAAVQCGLDAGV--QISAKGGGHSYGSYGFGGEDGHLMLELDRMYR 99
Query: 124 KNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGIS 183
+ + N T+ G +L +D N L HG APA L G +
Sbjct: 100 VSVDDNNVATIQGGARLGYTALEL-LDQGNRALSHGTAPAVGVGGHVLGGGYGFA----- 153
Query: 184 GQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPA 243
T +G + + VV ++ S +N++LF+A GG G F I++ A
Sbjct: 154 --THTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEA 211
Query: 244 PKRVKWVRMLYSDFSSFSRDQEY--LISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFF 301
P+ + Y ++++R Q L ++ Q L L ++ +L NW +FF
Sbjct: 212 PE----IITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANAL-NWEGNFF 266
Query: 302 PPSDHPKIISQ 312
+ K I Q
Sbjct: 267 GNAKDLKKILQ 277
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 109 QAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDY 168
A GG+V++M AL + + T A V+ +QL + A L HGL
Sbjct: 5 NAQNGGGLVIDMPALNRIHSIDSGTRLVDVDAGVSLDQL----MKAALPHGLWVPVLPGT 60
Query: 169 LYLTVGGTLSNAGISGQTFRYGPQISN-VYELDVVTGKGELMTCS-ALKNSELFYAALGG 226
+TVGG + I G+ N V ++++T GE+ + A +S+LF+A +GG
Sbjct: 61 RQVTVGGAI-GCDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGG 119
Query: 227 LGQFGIITRARIALEP 242
G GII RA I + P
Sbjct: 120 NGLTGIILRATIEMTP 135
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 7/173 (4%)
Query: 72 VLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNG 131
VL E IV V S A+G G S A GG+V++M L + +
Sbjct: 46 VLRTPDAEMIVKAVARVAESGGGRGAIARGLGRSYGDNAQNGGGLVIDMTPLNTIHSIDA 105
Query: 132 ITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGP 191
T A V +QL + A L GL +TVGG ++ I G+
Sbjct: 106 DTKLVDIDAGVNLDQL----MKAALPFGLWVPVLPGTRQVTVGGAIA-CDIHGKNHHSAG 160
Query: 192 QISN-VYELDVVTGKGELMTCSAL-KNSELFYAALGGLGQFGIITRARIALEP 242
N V +D++T GE+ + +++ELF+A +GG G GII RA I + P
Sbjct: 161 SFGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLTGIIMRATIEMTP 213
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 21/251 (8%)
Query: 68 NPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMA--DGGVVVEM--MAL 123
+P A+ P STEDI A V+ ++ V +I+AKG GHS DG +++E+ M
Sbjct: 42 DPAAIAIPRSTEDIAAAVQCGLDAGV--QISAKGGGHSYGSYGFGGEDGHLMLELDRMYR 99
Query: 124 KNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGIS 183
+ + N T+ G +L +D N L HG PA L G +
Sbjct: 100 VSVDDNNVATIQGGARLGYTALEL-LDQGNRALSHGTCPAVGVGGHVLGGGYGFA----- 153
Query: 184 GQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPA 243
T +G + + VV ++ S +N++LF+A GG G F I++ A
Sbjct: 154 --THTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEA 211
Query: 244 PKRVKWVRMLYSDFSSFSRDQEY--LISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFF 301
P+ + Y ++++R Q L ++ Q L L ++ +L NW +FF
Sbjct: 212 PE----IITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANAL-NWEGNFF 266
Query: 302 PPSDHPKIISQ 312
+ K I Q
Sbjct: 267 GNAKDLKKILQ 277
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 18/205 (8%)
Query: 64 IFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMAL 123
+F+ P VL+P+ +D+V +V A ++ I G G SV M +++L
Sbjct: 201 MFERIPDIVLWPTCHDDVVKIVNLACKYNLC--IIPIGGGTSVSYGLMCPADETRTIISL 258
Query: 124 KNYR-------NGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGT 176
+ + N +T + A + G++L + + G P S + TVGG
Sbjct: 259 DTSQMNRILWVDENNLT--AHVEAGITGQELERQLKESGYCTGHEPDSLE---FSTVGGW 313
Query: 177 LSNAGISGQTFRYGPQISNVYELDVVTGKGEL-MTCSALKNS---ELFYAALGGLGQFGI 232
+S + YG V + VVT +G + +C + S ++ + +G G G+
Sbjct: 314 ISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGV 373
Query: 233 ITRARIALEPAPKRVKWVRMLYSDF 257
IT A I + P P+ K+ + + +F
Sbjct: 374 ITEATIKIRPTPEYQKYGSVAFPNF 398
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 18/205 (8%)
Query: 64 IFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMAL 123
+F+ P VL+P+ +D+V +V A ++ I G G SV M +++L
Sbjct: 201 MFERIPDIVLWPTCHDDVVKIVNLACKYNLC--IIPIGGGTSVSYGLMCPADETRTIISL 258
Query: 124 KNYR-------NGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGT 176
+ + N +T + A + G++L + + G P S + TVGG
Sbjct: 259 DTSQMNRILWVDENNLT--AHVEAGITGQELERQLKESGYCTGHEPDSLE---FSTVGGW 313
Query: 177 LSNAGISGQTFRYGPQISNVYELDVVTGKGEL-MTCSALKNS---ELFYAALGGLGQFGI 232
+S + YG V + VVT +G + +C + S ++ + +G G G+
Sbjct: 314 ISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGV 373
Query: 233 ITRARIALEPAPKRVKWVRMLYSDF 257
IT A I + P P+ K+ + + +F
Sbjct: 374 ITEATIKIRPTPEYQKYGSVAFPNF 398
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 18/205 (8%)
Query: 64 IFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMAL 123
+F+ P VL+P+ +D+V +V A ++ I G G SV M +++L
Sbjct: 201 MFERIPDIVLWPTCHDDVVKIVNLACKYNLC--IIPIGGGTSVSYGLMCPADETRTIISL 258
Query: 124 KNYR-------NGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGT 176
+ + N +T + A + G++L + + G P S + TVGG
Sbjct: 259 DTSQMNRILWVDENNLT--AHVEAGITGQELERQLKESGYCTGHEPDSLE---FSTVGGW 313
Query: 177 LSNAGISGQTFRYGPQISNVYELDVVTGKGEL-MTCSALKNS---ELFYAALGGLGQFGI 232
+S + YG V + VVT +G + +C + S ++ + +G G G+
Sbjct: 314 ISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGV 373
Query: 233 ITRARIALEPAPKRVKWVRMLYSDF 257
IT A I + P P+ K+ + + +F
Sbjct: 374 ITEATIKIRPTPEYQKYGSVAFPNF 398
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 24/187 (12%)
Query: 69 PVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVR--GQAMADGGVVVE---MMAL 123
P A+ +T I + V+ A + K++AK GHS G +G ++V+ M+ +
Sbjct: 37 PTAIAQTQTTAHIQSAVQCA--KKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDV 94
Query: 124 KNYRNGNGIT-----VGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLS 178
+Y + GI G A V D + HG P + + G +
Sbjct: 95 ISYNDKTGIAHVEPGARLGHLATVLN-----DKYGRAISHGTCPG-------VGISGHFA 142
Query: 179 NAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARI 238
+ G + +G + +V + VV G ++ SA +N++LF+ G FGI+ ++
Sbjct: 143 HGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKL 202
Query: 239 ALEPAPK 245
A PAPK
Sbjct: 203 ATFPAPK 209
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native
Enzyme
pdb|2VFS|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Xylitol
pdb|2VFT|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sorbitol
pdb|2VFU|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Mannitol
pdb|2VFV|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sulphite
Length = 422
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 24/178 (13%)
Query: 72 VLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAM-ADGGVVVEMMALKNYRN-- 128
+L P S + + ALV + ++ G GHS A DGGV++ + L + +
Sbjct: 24 LLRPHSLDALRALVADSA------RVRVLGSGHSFNEIAEPGDGGVLLSLAGLPSVVDVD 77
Query: 129 --GNGITVGSGF-YADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQ 185
+ VG G YA++A V++A GLA + +++V G+++ G G
Sbjct: 78 TAARTVRVGGGVRYAELA------RVVHA---RGLALPNMASLPHISVAGSVAT-GTHGS 127
Query: 186 TFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPA 243
G S V E+++VT G + + + E F A+ LG G++T + LEPA
Sbjct: 128 GVGNGSLASVVREVELVTADGSTVVIA--RGDERFGGAVTSLGALGVVTSLTLDLEPA 183
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 188 RYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQ-FGIITRARIALEPAPKR 246
+YG NV ++ +V G+L ++ + F+A GG G+ FGI+ ++ L P P
Sbjct: 170 KYGIAAENVIDVKLVDANGKLHDKKSMGDDH-FWAVRGGGGESFGIVVAWQVKLLPVPPT 228
Query: 247 V 247
V
Sbjct: 229 V 229
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 182 ISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALE 241
+ G + P ++Y L + G +L ++L+ A+ G G+ +I R A E
Sbjct: 222 VGGDMLQEVPSNGDIYLLSRIIG--DLDEAASLRLLGNCREAMAGDGRVVVIERTISASE 279
Query: 242 PAPKRVKWVRMLYSDFSSFSRDQEYLISMNGR 273
P+P V W L+ + R E ++ + GR
Sbjct: 280 PSPMSVLWDVHLFMACAGRHRTTEEVVDLLGR 311
>pdb|3GXV|A Chain A, Three-Dimensional Structure Of N-Terminal Domain Of Dnab
Helicase From Helicobacter Pylori And Its Interactions
With Primase
pdb|3GXV|B Chain B, Three-Dimensional Structure Of N-Terminal Domain Of Dnab
Helicase From Helicobacter Pylori And Its Interactions
With Primase
Length = 123
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 28 KPSNILVPHKLLTLDIGARLH-----LDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIV 82
+PS+ P L +I +LH +D I+ I +E+ VA+ S ++I
Sbjct: 36 EPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPKDKQIKEEDLVAIFAASPIDNIE 95
Query: 83 ALVKAAYNSSVPFKIAAKGRGHSVRGQA 110
A V+ N+S+ K+ G +++R QA
Sbjct: 96 AYVEEIKNASIKRKLF--GLANTIREQA 121
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 24/188 (12%)
Query: 69 PVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGG--VVVEMMALKNY 126
P+ ++ PS+ I A + + V +I + GH G + VVV++ + +
Sbjct: 54 PLVIVTPSNNSHIQATILCS--KKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSI 111
Query: 127 RNGNGITVGSGFYADVAGEQL-----WIDVLNATLEH--GLAPASWTDYLYLTVGGTLSN 179
+ I V S AG L WI+ N L G P + VGG S
Sbjct: 112 K----IDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPT-------VGVGGHFSG 160
Query: 180 AGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQ-FGIITRARI 238
G YG N+ + +V G+++ ++ +LF+A GG G+ FGII +I
Sbjct: 161 GGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSM-GEDLFWAIRGGGGENFGIIAAWKI 219
Query: 239 ALEPAPKR 246
L P +
Sbjct: 220 KLVAVPSK 227
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 68 NPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKG---RGHSVRGQAMADGGVVVEMMALK 124
P+ ++ P++ I A V + ++ + G G S R + + VV+M ++
Sbjct: 54 KPLYIITPTNASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEK-PEPFAVVDMNKMR 112
Query: 125 NYR-NGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGIS 183
+G T + D +G QL L +G+A AS V T+ G
Sbjct: 113 AVSIDGKAATA----WVD-SGAQL------GDLYYGIAKASPKLGFPAGVCTTIGVGGHF 161
Query: 184 GQTF------RYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQ-FGIITRA 236
+YG NV + VV +G L+ A+ + F+A GG G+ FGI+
Sbjct: 162 SGGGFGMLLRKYGTAADNVIDAKVVDAQGRLLDRKAM-GEDHFWAIRGGGGESFGIVASW 220
Query: 237 RIALEPAPKRV 247
++ L P P +V
Sbjct: 221 QVKLLPVPPKV 231
>pdb|1I19|A Chain A, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
pdb|1I19|B Chain B, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
Length = 561
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 72 VLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNG 131
V P + +D+V L A+ +KI +G H + G V +++ + NG
Sbjct: 39 VCSPKTPQDVVRLANWAHEHD--YKIRPRGAMHGWTPLTVEKGANVEKVILADTMTHLNG 96
Query: 132 ITVGSG--FYADVAGEQLWIDVLNATLE-HGLAPASWTDYLYLTVGGTLS 178
ITV +G AG I+ + L+ H L A+ L++GG L+
Sbjct: 97 ITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALA 146
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 61 YGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGG--VVV 118
+ N P A++ P S E++ ++ S + I + GHS G + +++
Sbjct: 38 FQNSLISKPSAIILPGSKEELSNTIRCIRKGS--WTIRLRSGGHSYEGLSYTSDTPFILI 95
Query: 119 EMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVG---- 174
++M L N +++ D+ E W++ + E A + L T G
Sbjct: 96 DLMNL------NRVSI------DLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPT 143
Query: 175 ----GTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQF 230
G +S G + +YG NV + ++ G ++ A+ + GG G +
Sbjct: 144 VGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVW 203
Query: 231 GIITRARIALEPAPKRVKWVRM 252
G I +I L P P++V R+
Sbjct: 204 GAIYAWKIKLLPVPEKVTVFRV 225
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 61 YGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGG--VVV 118
+ N P A++ P S E++ ++ S + I + GHS G + +++
Sbjct: 38 FQNSLISKPSAIILPGSKEELSNTIRCIRKGS--WTIRLRSGGHSYEGLSYTSDTPFILI 95
Query: 119 EMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVG---- 174
++M L N +++ D+ E W++ + E A + L T G
Sbjct: 96 DLMNL------NRVSI------DLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPT 143
Query: 175 ----GTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQF 230
G +S G + +YG NV + ++ G ++ A+ + GG G +
Sbjct: 144 VGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVW 203
Query: 231 GIITRARIALEPAPKRVKWVRM 252
G I +I L P P++V R+
Sbjct: 204 GAIYAWKIKLLPVPEKVTVFRV 225
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 61 YGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGG--VVV 118
+ N P A++ P S E++ ++ S + I + GHS G + +++
Sbjct: 38 FQNSLISKPSAIILPGSKEELSNTIRCIRKGS--WTIRLRSGGHSYEGLSYTSDTPFILI 95
Query: 119 EMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVG---- 174
++M L N +++ D+ E W++ + E A + L T G
Sbjct: 96 DLMNL------NRVSI------DLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPT 143
Query: 175 ----GTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQF 230
G +S G + +YG NV + ++ G ++ A+ + GG G +
Sbjct: 144 VGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVW 203
Query: 231 GIITRARIALEPAPKRVKWVRM 252
G I +I L P P++V R+
Sbjct: 204 GAIYAWKIKLLPVPEKVTVFRV 225
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 61 YGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGG--VVV 118
+ N P A++ P S E++ ++ S + I + GHS G + +++
Sbjct: 44 FQNSLISKPSAIILPGSKEELSNTIRCIRKGS--WTIRLRSGGHSYEGLSYTSDTPFILI 101
Query: 119 EMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVG---- 174
++M L N +++ D+ E W++ + E A + L T G
Sbjct: 102 DLMNL------NRVSI------DLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPT 149
Query: 175 ----GTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQF 230
G +S G + +YG NV + ++ G ++ A+ + GG G +
Sbjct: 150 VGTGGAISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVW 209
Query: 231 GIITRARIALEPAPKRVKWVRM 252
G I +I L P P++V R+
Sbjct: 210 GAIYAWKIKLLPVPEKVTVFRV 231
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 61 YGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGG--VVV 118
+ N P A++ P S E++ ++ S + I + GHS G + +++
Sbjct: 44 FQNSLISKPSAIILPGSKEELSNTIRCIRKGS--WTIRLRSGGHSYEGLSYTSDTPFILI 101
Query: 119 EMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVG---- 174
++M L N +++ D+ E W++ + E A + L T G
Sbjct: 102 DLMNL------NRVSI------DLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPT 149
Query: 175 ----GTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQF 230
G +S G + +YG NV + ++ G ++ A+ + GG G +
Sbjct: 150 VGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVW 209
Query: 231 GIITRARIALEPAPKRVKWVRM 252
G I +I L P P++V R+
Sbjct: 210 GAIYAWKIKLLPVPEKVTVFRV 231
>pdb|3ZZM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|3ZZM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|4A1O|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution.
pdb|4A1O|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution
Length = 523
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 28/117 (23%)
Query: 158 HGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNS 217
HG PA+WT L G A ++ F + C A+K++
Sbjct: 391 HGDNPANWT----LATGSPADPATLTDLVFAW-------------------RACRAVKSN 427
Query: 218 ELFYAALG-----GLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLIS 269
+ AA G G+GQ + AR+A+E +RV+ F F E L +
Sbjct: 428 AIVIAADGATVGVGMGQVNRVDAARLAVERGGERVRGAVAASDAFFPFPDGLETLAA 484
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 61 YGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGG--VVV 118
+ N P A++ P S E++ ++ S + I + GHS G + +++
Sbjct: 63 FQNSLISKPSAIILPGSKEELSNTIRCIRKGS--WTIRLRSGGHSYEGLSYTSDTPFILI 120
Query: 119 EMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVG---- 174
++M L N +++ D+ E W++ + E A + L T G
Sbjct: 121 DLMNL------NRVSI------DLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPT 168
Query: 175 ----GTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQF 230
G +S G + +YG NV + ++ G ++ A+ + GG G +
Sbjct: 169 VGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVW 228
Query: 231 GIITRARIALEPAPKRVKWVRM 252
G I +I L P P++V R+
Sbjct: 229 GAIYAWKIKLLPVPEKVTVFRV 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,176,207
Number of Sequences: 62578
Number of extensions: 706786
Number of successful extensions: 1552
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1474
Number of HSP's gapped (non-prelim): 39
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)