Query 009793
Match_columns 525
No_of_seqs 214 out of 2600
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 17:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.9E-75 6.3E-80 612.4 53.4 508 9-524 8-520 (525)
2 KOG1231 Proteins containing th 100.0 9.5E-68 2.1E-72 521.9 33.6 487 9-524 3-500 (505)
3 PLN02805 D-lactate dehydrogena 100.0 8.6E-62 1.9E-66 518.4 30.2 425 37-522 101-550 (555)
4 PRK11230 glycolate oxidase sub 100.0 2.4E-61 5.1E-66 512.8 32.1 439 36-522 23-473 (499)
5 TIGR00387 glcD glycolate oxida 100.0 2.7E-55 5.8E-60 459.4 31.6 392 72-519 1-413 (413)
6 KOG1232 Proteins containing th 100.0 1.2E-55 2.5E-60 425.6 18.1 423 36-521 57-511 (511)
7 COG0277 GlcD FAD/FMN-containin 100.0 2.1E-48 4.6E-53 415.3 38.5 435 44-521 8-456 (459)
8 PRK11183 D-lactate dehydrogena 100.0 2.6E-39 5.6E-44 334.3 26.2 241 36-287 7-308 (564)
9 PRK11282 glcE glycolate oxidas 100.0 5.4E-39 1.2E-43 324.7 26.8 182 77-268 3-193 (352)
10 TIGR01676 GLDHase galactonolac 100.0 6.2E-37 1.3E-41 322.1 37.8 201 59-270 52-253 (541)
11 KOG1233 Alkyl-dihydroxyacetone 100.0 4.7E-39 1E-43 311.1 19.7 425 62-521 154-613 (613)
12 TIGR01679 bact_FAD_ox FAD-link 100.0 7.1E-37 1.5E-41 319.9 37.5 399 59-517 2-411 (419)
13 TIGR01678 FAD_lactone_ox sugar 100.0 3.7E-36 8.1E-41 314.7 38.1 200 59-269 5-205 (438)
14 TIGR01677 pln_FAD_oxido plant- 100.0 1.4E-35 3.1E-40 316.2 36.1 204 57-269 20-235 (557)
15 PLN02465 L-galactono-1,4-lacto 100.0 5.4E-33 1.2E-37 294.7 40.1 202 58-270 86-288 (573)
16 PF09265 Cytokin-bind: Cytokin 100.0 4.2E-35 9E-40 283.0 18.5 275 244-522 1-281 (281)
17 KOG4730 D-arabinono-1, 4-lacto 99.9 3.1E-25 6.8E-30 220.5 25.8 190 66-265 47-237 (518)
18 PF01565 FAD_binding_4: FAD bi 99.9 4.6E-27 1E-31 209.6 11.6 137 69-212 1-139 (139)
19 PRK13905 murB UDP-N-acetylenol 99.9 1.6E-23 3.4E-28 209.7 13.1 163 65-244 27-193 (298)
20 PRK12436 UDP-N-acetylenolpyruv 99.9 5.9E-22 1.3E-26 198.0 12.0 176 47-243 19-197 (305)
21 PRK14652 UDP-N-acetylenolpyruv 99.9 4.7E-21 1E-25 191.1 13.5 165 65-245 32-197 (302)
22 PRK13906 murB UDP-N-acetylenol 99.8 4.5E-21 9.9E-26 191.6 12.4 186 37-243 9-197 (307)
23 TIGR00179 murB UDP-N-acetyleno 99.8 5.9E-20 1.3E-24 182.1 13.0 163 65-243 9-175 (284)
24 PF02913 FAD-oxidase_C: FAD li 99.8 1.6E-20 3.4E-25 183.5 2.4 219 243-520 1-248 (248)
25 PRK14653 UDP-N-acetylenolpyruv 99.8 1.3E-18 2.9E-23 172.3 12.8 163 65-245 30-195 (297)
26 PRK13903 murB UDP-N-acetylenol 99.8 2E-18 4.3E-23 175.2 13.9 162 65-244 29-197 (363)
27 KOG1262 FAD-binding protein DI 99.7 7.6E-17 1.6E-21 157.7 18.5 137 131-270 114-252 (543)
28 PRK14649 UDP-N-acetylenolpyruv 99.7 5.9E-17 1.3E-21 161.3 14.9 165 65-245 17-194 (295)
29 PRK14650 UDP-N-acetylenolpyruv 99.6 1.1E-15 2.4E-20 151.0 11.8 164 65-246 29-197 (302)
30 COG0812 MurB UDP-N-acetylmuram 99.6 2.7E-15 5.9E-20 145.9 13.4 162 65-243 17-183 (291)
31 PRK00046 murB UDP-N-acetylenol 99.6 6.3E-15 1.4E-19 147.9 13.8 160 65-243 17-188 (334)
32 PRK14648 UDP-N-acetylenolpyruv 99.5 2.4E-14 5.2E-19 143.5 11.5 164 65-245 26-238 (354)
33 PRK14651 UDP-N-acetylenolpyruv 99.4 4.1E-12 8.9E-17 124.0 13.6 150 65-243 17-170 (273)
34 PRK13904 murB UDP-N-acetylenol 99.0 6.3E-10 1.4E-14 107.7 9.1 145 65-245 15-161 (257)
35 PF04030 ALO: D-arabinono-1,4- 97.4 0.00043 9.3E-09 68.2 7.6 122 388-517 128-253 (259)
36 PF08031 BBE: Berberine and be 97.4 0.00013 2.9E-09 51.6 2.7 30 490-519 14-44 (47)
37 PLN00107 FAD-dependent oxidore 97.2 0.0024 5.3E-08 61.4 10.0 135 375-517 46-196 (257)
38 PF00941 FAD_binding_5: FAD bi 96.8 0.00056 1.2E-08 62.9 2.0 121 69-208 2-141 (171)
39 PRK09799 putative oxidoreducta 96.7 0.0027 5.9E-08 62.4 6.1 140 71-239 4-155 (258)
40 TIGR03312 Se_sel_red_FAD proba 96.5 0.0042 9E-08 61.0 5.9 100 72-181 4-110 (257)
41 TIGR02963 xanthine_xdhA xanthi 96.0 0.016 3.4E-07 62.0 7.4 103 69-181 192-304 (467)
42 PRK09971 xanthine dehydrogenas 95.8 0.018 3.9E-07 57.7 6.0 102 71-181 6-119 (291)
43 TIGR03195 4hydrxCoA_B 4-hydrox 95.1 0.02 4.4E-07 57.8 3.9 101 70-180 5-117 (321)
44 TIGR03199 pucC xanthine dehydr 94.8 0.02 4.4E-07 56.5 2.9 96 75-180 1-109 (264)
45 COG4630 XdhA Xanthine dehydrog 92.7 0.44 9.6E-06 48.1 7.8 127 66-208 200-338 (493)
46 PLN00192 aldehyde oxidase 92.5 0.32 7E-06 58.7 8.0 107 69-181 233-353 (1344)
47 TIGR02969 mam_aldehyde_ox alde 92.4 0.26 5.6E-06 59.4 7.1 103 70-182 237-360 (1330)
48 COG1319 CoxM Aerobic-type carb 92.0 0.37 8.1E-06 47.7 6.4 105 69-182 3-119 (284)
49 PLN02906 xanthine dehydrogenas 92.0 0.3 6.5E-06 58.9 6.8 102 70-181 229-351 (1319)
50 COG0019 LysA Diaminopimelate d 31.9 88 0.0019 32.8 5.6 74 442-524 194-283 (394)
51 TIGR00178 monomer_idh isocitra 27.7 4.9E+02 0.011 28.8 10.0 133 78-222 312-458 (741)
52 PF09330 Lact-deh-memb: D-lact 26.2 34 0.00073 33.6 1.2 20 500-519 263-282 (291)
53 COG4981 Enoyl reductase domain 24.3 1E+02 0.0022 33.3 4.4 33 66-99 149-181 (717)
54 PF00076 RRM_1: RNA recognitio 23.6 1.9E+02 0.0042 20.8 4.9 46 218-267 14-59 (70)
55 PF02601 Exonuc_VII_L: Exonucl 22.6 88 0.0019 31.6 3.6 38 69-106 42-89 (319)
56 cd07033 TPP_PYR_DXS_TK_like Py 22.3 1.1E+02 0.0024 27.2 3.8 29 70-100 125-153 (156)
57 PF02779 Transket_pyr: Transke 22.3 1.4E+02 0.0029 27.3 4.5 33 70-102 139-171 (178)
58 KOG0114 Predicted RNA-binding 21.7 1.7E+02 0.0038 24.4 4.3 39 228-268 40-78 (124)
59 PRK04322 peptidyl-tRNA hydrola 21.5 1.3E+02 0.0029 25.4 3.9 45 56-104 37-82 (113)
60 PF14259 RRM_6: RNA recognitio 20.6 3E+02 0.0064 20.1 5.4 45 218-266 14-58 (70)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.9e-75 Score=612.42 Aligned_cols=508 Identities=62% Similarity=1.062 Sum_probs=448.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCccccccccccccCceeecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHHHH
Q 009793 9 TYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAA 88 (525)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a 88 (525)
..+++++.++.++++.+...+.....+..+ .+.++|.+|+.++..|++||+..+...|.+|++|+|++||+++|++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A 84 (525)
T PLN02441 8 LRLLLILFLSSLTSSVGLCSSPSSLLPKLL---SLDGHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAA 84 (525)
T ss_pred HHHHHHHHHHHhhhccCcccCccccccccc---ccCceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHH
Confidence 334444444445554444433333333222 26889999999999999999998899999999999999999999999
Q ss_pred HcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCC-CeEEEcC-CcEEEEcCCccHHHHHHHHHhCCCcccccC
Q 009793 89 YNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNG-NGITVGS-GFYADVAGEQLWIDVLNATLEHGLAPASWT 166 (525)
Q Consensus 89 ~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~-~~i~id~-~~~v~v~aGv~~~~l~~~l~~~gl~p~~~~ 166 (525)
++++++++|.+||+||++.|++.+.+|++|||++||+|... .++++|. ..+++|+||++|.++++++.++|++|++++
T Consensus 85 ~~~~~~~~V~~rGgGHS~~G~a~~~~GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~ 164 (525)
T PLN02441 85 YGSSSPLTVAARGHGHSLNGQAQAPGGVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWT 164 (525)
T ss_pred hhccCCceEEEECCCcCCCCCccCCCeEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCcc
Confidence 74577999999999999999998878999999999962111 1467777 889999999999999999999999999999
Q ss_pred CCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCCCChhHHHHHhcCCCcceEEEEeEEEEEecCCc
Q 009793 167 DYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKR 246 (525)
Q Consensus 167 ~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~~~~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~ 246 (525)
+...+||||+++|+|.|+.+++||...|+|+++|||++||++++|++.+|+|||++++||+|+|||||++|+|++|.|+.
T Consensus 165 d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~ 244 (525)
T PLN02441 165 DYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKR 244 (525)
T ss_pred ccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecCCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCChhhHHHHHHHHHHccCcCCccccccccceeeec-CCccCCCcccCCCCCCCcccccccccccEEEEEEEE
Q 009793 247 VKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMD-QGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVA 325 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~ 325 (525)
..++.+.|.+++++.+.++.+++. ..+...|+++.+.+.. .+.+..|.++++.+++..++..++.++..+|++|++
T Consensus 245 v~~~~~~y~~~~~~~~d~~~li~~---~~~~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~ 321 (525)
T PLN02441 245 VRWIRVLYSDFSTFTRDQERLISR---PPENSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVA 321 (525)
T ss_pred eEEEEEEcCCHHHHHHHHHHHHhc---CCCCCcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEEEE
Confidence 899999999999999999988862 3456789999998887 467777877778877776667777778899999999
Q ss_pred eeeCCCCchhhHHHHHHHHhhccCCCCccccccchHHHHHHhhhhhhHHHhhccCccCCccceeeccccccHHHHHhHHH
Q 009793 326 KYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVF 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~~r~~~~d~~vP~~~l~~~~~~i~ 405 (525)
.+|+..+...+++..+.+++.++...|..+..|++|.+|+++++..+...+..++|..+|+|+++.||.+++.+|.+.++
T Consensus 322 ~~~~~~~~~~~~~~~~~ll~~L~~~~~~~~~~d~~y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~ 401 (525)
T PLN02441 322 KYYDEDTSDTVDQEVESLLKRLSFIPGLLFTTDVSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVF 401 (525)
T ss_pred EeeCCCCccchhhHHHHHHhhcCCCCCCceecccCHHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHH
Confidence 99987677778889999999998778888889999999999999888999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccEEEEeCCCCCCCCCccccccCCcEEEEEccccCCC--hhhHHHHHHHHHHHHHHHHHcCCceeecCC
Q 009793 406 RDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSG--FDEWEAFDDQNKEILKFCENAGIKVKQYLP 483 (525)
Q Consensus 406 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~~h~~i~~~~~~~--~~~~~~~~~~~~~l~~~~~~~G~g~~~yl~ 483 (525)
+.+... +..+++++|||+..+|+.+.+...++++..|.++++++.. ++..+.+.+.++++++.|.++|++.++|++
T Consensus 402 ~~i~~~--~~~G~~liyP~~~~~~~~~~s~~~P~~~~~y~v~~l~~~~p~~~~~~~~~~~n~~i~~~~~~~g~~~k~Yl~ 479 (525)
T PLN02441 402 KGILLD--GTNGPILVYPLNRSKWDNRTSAVIPDEDIFYLVALLRSALPSGDDLEHLLAQNKEILRFCEKAGIGVKQYLP 479 (525)
T ss_pred hhcccc--cCCCeEEEEecccccCCCCCccccCCCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHHHHcCCceEEcCC
Confidence 888864 3458999999999999999999999999999999988764 347899999999999999999999999999
Q ss_pred CCCChHHHHHhhhhhHHHHHHhhhcCCCcCcCCCCcccccc
Q 009793 484 YHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIFNN 524 (525)
Q Consensus 484 ~~~~~~~w~~~~G~~~~~~~~iK~~~DP~gilNPGk~~~~~ 524 (525)
++.++++|++|||+.|+.+.+.|++|||++||+||+-||++
T Consensus 480 ~~~~~~~W~~HfG~~w~~f~~~K~~yDP~~iL~pgq~if~~ 520 (525)
T PLN02441 480 HYTTQEEWKRHFGPKWETFVRRKAKFDPLAILSPGQRIFNR 520 (525)
T ss_pred CCCCHHHHHHHhcchHHHHHHHHhhCCchhhcCCCCccCCC
Confidence 99999999999999999999999999999999999999987
No 2
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=9.5e-68 Score=521.88 Aligned_cols=487 Identities=51% Similarity=0.838 Sum_probs=408.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCcccccccccc--ccCceeecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHH
Q 009793 9 TYIIIILIISRLISTIGNSKPSNILVPHKLLTL--DIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVK 86 (525)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~ 86 (525)
+++.+|+|..+.|-..-.|+-. ...++-++.+ .+.+.+.++++.....++||+..++..|.+|+.|+|+|||++++|
T Consensus 3 ~~~~lflI~~l~~i~~~~p~~~-ks~~~~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk 81 (505)
T KOG1231|consen 3 SSLRLFLITLLSIIKLITPVIT-KSSESLKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILK 81 (505)
T ss_pred hhHHHHHHHHHHHHhcccchhh-ccCcchhhhcCccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHH
Confidence 4556666666555553344311 1123333333 577888889988999999999989999999999999999999999
Q ss_pred HHHcCCCCcEEEEecCCCCCCCCCcC-CCcEEEEcCC---ccCcCCCCeEEEcCCcEEEEcCCccHHHHHHHHHhCCCcc
Q 009793 87 AAYNSSVPFKIAAKGRGHSVRGQAMA-DGGVVVEMMA---LKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAP 162 (525)
Q Consensus 87 ~a~~~~~~~~v~~~g~G~~~~g~~~~-~~gvvidl~~---mn~i~~~~~i~id~~~~v~v~aGv~~~~l~~~l~~~gl~p 162 (525)
.|+.....+||+|||+|||+.|++.+ .+|++|.|+. |+++ .++.++ +.++.|+||..|-||++++.++|+.|
T Consensus 82 ~~~~~~s~~pVaarG~GhSl~Gqa~a~~~GvvV~m~~~~~~~~~---~~~~~~-~~yvdV~~g~~Widll~~t~e~GL~p 157 (505)
T KOG1231|consen 82 HCNDYGSNFPVAARGGGHSLEGQALATRGGVVVCMDSSLLMKDV---PVLVVD-DLYVDVSAGTLWIDLLDYTLEYGLSP 157 (505)
T ss_pred HHhccCCcceeeccCCcccccCccccCCCCeEEEEehhhccCCC---ceeecc-cceEEeeCChhHHHHHHHHHHcCCCc
Confidence 99832238999999999999999998 7998887754 4432 344444 79999999999999999999999998
Q ss_pred cccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCCCChhHHHHHhcCCCcceEEEEeEEEEEe
Q 009793 163 ASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEP 242 (525)
Q Consensus 163 ~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~~~~dl~~~~~Gs~G~lGiit~~tl~l~p 242 (525)
..+......||||+++|+|.|+.+++||+..+||++|+||+++|++++|+.+.|++||.+++||+|+|||||+++++|+|
T Consensus 158 ~swtDyl~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGglGqfGIITrArI~le~ 237 (505)
T KOG1231|consen 158 FSWTDYLPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGLGQFGIITRARIKLEP 237 (505)
T ss_pred cCcCCccceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeeeeeeccCcceeeEEEEEEEecc
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEeCChhhHHHHHHHHHHccCcCCccccccccceeeecC-CccCCCcccCCCCCCCcccccccccccEEEE
Q 009793 243 APKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQ-GSLDNWRSSFFPPSDHPKIISQVKTHAIIYC 321 (525)
Q Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 321 (525)
+|+. | ++.++...+ .++++.++.+++. +..++|+.+++...++-++..+..+....++
T Consensus 238 aP~~---------d-------Qe~lis~~~-----~fd~veg~~~~~~~gl~~n~r~s~f~l~D~~~i~~~~~~~~~~yc 296 (505)
T KOG1231|consen 238 APKR---------D-------QERLISVCG-----SFDTVEGAAIVARNGLQSNIRVSRFELLDEVQIAAINSDHSTNYC 296 (505)
T ss_pred CCcc---------c-------hHHhhhhhc-----CCcchhhhhhhhhccccccceeeccccCcHHHHHHHHhcCCeeee
Confidence 9964 1 122222211 4566666666663 6667777776666555455556667788999
Q ss_pred EEEEeeeCCCCchhhHHHHHHHHhhccCCCCccccccchHHHHHHhhhhhhHHHhhccCccCCccceeeccccccHHHHH
Q 009793 322 LEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFN 401 (525)
Q Consensus 322 ~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~~r~~~~d~~vP~~~l~~~~ 401 (525)
+|++.+|+..+.+.+.++++.+.+.+....+..+..+++|.+|+++++.+.+..+..++|+.||+|+...+|.+++.++.
T Consensus 297 lev~ky~d~~e~pti~~e~~~l~~~l~~~~~~~~~~~v~y~~fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~fa 376 (505)
T KOG1231|consen 297 LEVAKYYDLTEAPTLFQEIGGLSEKLNYAPTFIVEQDVQYHDFLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDFA 376 (505)
T ss_pred eehhhccCcccCchHHHHHhccchhhhccchhhhhhhhHHHHhhhHhhhcccchhhcccccCCCchheeecccccchhhh
Confidence 99999998777888999999988888777777777889999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhcCCCCccEEEEeCCCC-CCCCCcccc---ccCCcEEEEEccccCCChhhHHHHHHHHHHHHHHHHHcCCc
Q 009793 402 KGVFRDIVLKRNITTGPVLVYPMNRN-KWDDRMSAV---IPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIK 477 (525)
Q Consensus 402 ~~i~~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~---~~dg~~h~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~g 477 (525)
+.++..++- +.+.+++++||+++. +|..+.+.+ +++|++|....+ .+.++++.+.+...++++.+.|.++|++
T Consensus 377 ~gv~~dIl~--~~s~g~~liyptnk~~kw~~~~sav~ph~~e~vFy~v~~l-~s~~~~~~e~~~~~n~riv~fc~~ag~~ 453 (505)
T KOG1231|consen 377 RGVFTDILV--PNSSGPVLIYPTNKDLKWSNRLSAVTPHAGEGVFYLVILL-RSSGKEEHEELEQLNDRIVKFCLAAGTC 453 (505)
T ss_pred hhhccceee--ccCCCceEEeccccCcchhhhhccccccCCCceEEEEEEe-cCCCchhHHHHHHHHHHHHHHHHHcCcC
Confidence 988877774 235589999999998 998888766 456777777655 7788889999999999999999999999
Q ss_pred eeecCCCCCChHHHHHhhhhhHHHHHHhhhcCCCcCcCCCCcccccc
Q 009793 478 VKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIFNN 524 (525)
Q Consensus 478 ~~~yl~~~~~~~~w~~~~G~~~~~~~~iK~~~DP~gilNPGk~~~~~ 524 (525)
.++|++++-.+++|.++||..|..+.++|.+|||+.||||||.||.+
T Consensus 454 ~keyl~~~~~~e~w~~hfG~~w~~f~~~K~~~DPk~Il~PGq~Ifq~ 500 (505)
T KOG1231|consen 454 TKEYLPHYGKREYWVEHFGEKWVDFMRIKKAYDPKRILNPGQRIFQK 500 (505)
T ss_pred hhhhcCCcccHHHHHHHhChhHHHHHHHHhhcCHHHhcCCccccccC
Confidence 99999999999999999999999999999999999999999999965
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=8.6e-62 Score=518.37 Aligned_cols=425 Identities=18% Similarity=0.211 Sum_probs=326.5
Q ss_pred cccccccCceeecChhHHHHHhccccCcCC--CCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcC-C
Q 009793 37 KLLTLDIGARLHLDPAAIKSASSDYGNIFK--ENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMA-D 113 (525)
Q Consensus 37 ~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~--~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~-~ 113 (525)
+|+++ ++++|.+|++++..|++|+...++ ..|.+|++|+|++||+++|++|+ ++++||+||||||++.|++.+ .
T Consensus 101 ~L~~~-l~~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~--~~~ipv~prGgGts~~G~~~~~~ 177 (555)
T PLN02805 101 ELKAI-LQDNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCN--KYKVPIVPYGGATSIEGHTLAPH 177 (555)
T ss_pred HHHHh-cCCceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHH--HCCCcEEEECCCCCCCCCccCCC
Confidence 45554 346699999999999999753332 47999999999999999999998 899999999999999999886 4
Q ss_pred CcEEEEcCCccCcCCCCeEEEcC-CcEEEEcCCccHHHHHHHHHhCCC-cccccCCCCceeEeeecCCCCCCCCccccCc
Q 009793 114 GGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVLNATLEHGL-APASWTDYLYLTVGGTLSNAGISGQTFRYGP 191 (525)
Q Consensus 114 ~gvvidl~~mn~i~~~~~i~id~-~~~v~v~aGv~~~~l~~~l~~~gl-~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~ 191 (525)
+|++|||++||+ ++++|+ +.+++||||+++.+|+++|.++|+ +|+++. +.+||||+++++++|..+.+||.
T Consensus 178 ggivIdl~~mn~-----I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~--~~~TIGG~ia~n~~G~~s~~yG~ 250 (555)
T PLN02805 178 GGVCIDMSLMKS-----VKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPG--PGATIGGMCATRCSGSLAVRYGT 250 (555)
T ss_pred CEEEEEccCCCC-----eEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCc--cccChhhHhhCCCcccccCcccc
Confidence 799999999997 678888 899999999999999999999998 477765 36899999999999999999999
Q ss_pred ccccEEEEEEEecCccEEEecCC-----CChhHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHH
Q 009793 192 QISNVYELDVVTGKGELMTCSAL-----KNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEY 266 (525)
Q Consensus 192 ~~d~v~~~~vV~~dG~~~~~~~~-----~~~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~ 266 (525)
++|+|++++||+|||++++++.. .++||+++++||+|+|||||+++||++|.|+....+.+.|++++++.+++..
T Consensus 251 ~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 251 MRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred HHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHH
Confidence 99999999999999999988542 4689999999999999999999999999999999999999999999999998
Q ss_pred HHHccCcCCccccccccceeeecCCccCCCcccCCCCCCCcccccccccccEEEEEEEEeeeCCCCchhhHHHHHHHHhh
Q 009793 267 LISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKG 346 (525)
Q Consensus 267 ~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 346 (525)
+.+. ++.|+++|++|...+.. +.. +.. ..+|. .+++++|+. + +.+.++++.+.+.+.
T Consensus 331 i~~~--g~~psa~ElmD~~~~~~---~~~-----~~~------~~~p~--~~~Ll~e~~----g-~~~~~~~~~~~~~~i 387 (555)
T PLN02805 331 TMLS--GIQVSRVELLDEVQIRA---INM-----ANG------KNLPE--APTLMFEFI----G-TEAYAREQTLIVQKI 387 (555)
T ss_pred HHhC--CCCcEEEEEECHHHHHH---HHH-----hcC------CCCCc--ceEEEEEEe----c-CcHHHHHHHHHHHHH
Confidence 8764 37899999999864311 010 000 11332 477888864 3 445566666666666
Q ss_pred ccCCCCc--cccccc-hHHHHHHhhhhhhHHHhh--ccCccCCccceeeccccccHHHHHhHHHHHhhhhcCCCCccEEE
Q 009793 347 LSYLPGF--MFEKDV-SYVEFLNRVRSGELKLES--QGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLV 421 (525)
Q Consensus 347 ~~~~~g~--~~~~~~-~~~~~~~~~~~~~~~~~~--~~lW~~r~~~~d~~vP~~~l~~~~~~i~~~l~~~~~~~~~~i~~ 421 (525)
+...++. ....+. ....+|...+........ ...| .-..|++||+++++++++++ +++.++..
T Consensus 388 ~~~~g~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~---~~~~DvaVP~s~L~e~i~~~-~~~~~~~~-------- 455 (555)
T PLN02805 388 ASKHNGSDFVFAEEPEAKKELWKIRKEALWACFAMEPKYE---AMITDVCVPLSHLAELISRS-KKELDASP-------- 455 (555)
T ss_pred HHhCCCceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCCc---eeEEEEEEEHHHHHHHHHHH-HHHHHHcC--------
Confidence 6543332 111111 111222211100000000 0000 01359999999999999998 67776521
Q ss_pred EeCCCCCCCCCccccccCCcEEEEEccccCCChhhHHHHHHHHHHHHHHHHH--------cCCc--eeecCCCCCChHHH
Q 009793 422 YPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCEN--------AGIK--VKQYLPYHRNKEEW 491 (525)
Q Consensus 422 ~~~~~~~~~~~~~~~~~dg~~h~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~G~g--~~~yl~~~~~~~~w 491 (525)
+.....+|+|||++|+++.+ +..++++.+++.++.+++++.+.+ ||+| +++|+..++++.
T Consensus 456 -------~~~~~~gHaGdGnlH~~i~~-~~~~~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~-- 525 (555)
T PLN02805 456 -------LVCTVIAHAGDGNFHTIILF-DPSQEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIE-- 525 (555)
T ss_pred -------CeEEEEEEcCCCcEEEEecc-CCCCHHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHH--
Confidence 11123368999999999976 555566677788888888888864 5777 888888777777
Q ss_pred HHhhhhhHHHHHHhhhcCCCcCcCCCCcccc
Q 009793 492 IKHFGSKWNTFAQRKAHFDPKMILSPGQRIF 522 (525)
Q Consensus 492 ~~~~G~~~~~~~~iK~~~DP~gilNPGk~~~ 522 (525)
.++.|++||+.|||+|||||||+|-
T Consensus 526 ------~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 526 ------ALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred ------HHHHHHHHHHHhCcCcCCCCCceeC
Confidence 8999999999999999999999873
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=2.4e-61 Score=512.81 Aligned_cols=439 Identities=17% Similarity=0.226 Sum_probs=334.4
Q ss_pred ccccccccCceeecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCC-C
Q 009793 36 HKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMAD-G 114 (525)
Q Consensus 36 ~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~-~ 114 (525)
.+|+++...+.|.++++.+..|++|++..++..|.+|++|+|++||+++||+|+ ++++||+|||+||++.|++.+. +
T Consensus 23 ~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~--~~~ipv~~rG~Gt~~~gg~~~~~~ 100 (499)
T PRK11230 23 MALREHLPGLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCH--RLRVPVVARGAGTGLSGGALPLEK 100 (499)
T ss_pred HHHHHhcCcceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHH--HcCCeEEEECCCcCcCCCcccCCC
Confidence 467787777899999999999999986667889999999999999999999998 8999999999999999888774 7
Q ss_pred cEEEEcCCccCcCCCCeEEEcC-CcEEEEcCCccHHHHHHHHHhCCCc-ccccCCCCceeEeeecCCCCCCCCccccCcc
Q 009793 115 GVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVLNATLEHGLA-PASWTDYLYLTVGGTLSNAGISGQTFRYGPQ 192 (525)
Q Consensus 115 gvvidl~~mn~i~~~~~i~id~-~~~v~v~aGv~~~~l~~~l~~~gl~-p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~ 192 (525)
|++|||++||+ ++++|+ +.+++||||+++.+|+++|.++|++ |+++++...+||||++++++.|..+.+||.+
T Consensus 101 gividl~~ln~-----I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~ 175 (499)
T PRK11230 101 GVLLVMARFNR-----ILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLT 175 (499)
T ss_pred cEEEEcccCCC-----ceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCCh
Confidence 89999999997 689998 8999999999999999999999985 8888888889999999999889999999999
Q ss_pred cccEEEEEEEecCccEEEecCC----CChhHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHH
Q 009793 193 ISNVYELDVVTGKGELMTCSAL----KNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLI 268 (525)
Q Consensus 193 ~d~v~~~~vV~~dG~~~~~~~~----~~~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 268 (525)
+|+|++++||++||++++++.. .++||+++++||+|+|||||++|||++|.|+....+.+.|++.+++.+++..+.
T Consensus 176 ~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 176 VHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred hhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999853 488999999999999999999999999999998999999999999999999887
Q ss_pred HccCcCCccccccccceeeecCCccCCCcccCCCCCCCcccccccccccEEEEEEEEeeeCCCCchhhHHHHHHHHhhcc
Q 009793 269 SMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLS 348 (525)
Q Consensus 269 ~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 348 (525)
+. ++.|..+|++|....... .. +.. ..+|.+..+++++|+. + +.+.++.+++.+.+.+.
T Consensus 256 ~~--~~~p~~~el~d~~~~~~~---~~-----~~~------~~~p~~~~~~ll~e~~----g-~~~~v~~~~~~l~~~~~ 314 (499)
T PRK11230 256 AA--GIIPGGLEMMDNLSIRAA---ED-----FIH------AGYPVDAEAILLCELD----G-VESDVQEDCERVNDILL 314 (499)
T ss_pred hc--CCCcEEEEeeCHHHHHHH---HH-----hcC------CCCCCCcceEEEEEec----C-CchHHHHHHHHHHHHHH
Confidence 65 378999999988643210 00 100 1123344577888863 3 45567777788877776
Q ss_pred CCCCc--cccccc-hHHHHHHhhhhhhHHHhhccCccCCccceeeccccccHHHHHhHHHHHhhhhcCCCCccEEEEeCC
Q 009793 349 YLPGF--MFEKDV-SYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMN 425 (525)
Q Consensus 349 ~~~g~--~~~~~~-~~~~~~~~~~~~~~~~~~~~lW~~r~~~~d~~vP~~~l~~~~~~i~~~l~~~~~~~~~~i~~~~~~ 425 (525)
..++. ....+. ....+|...+......... ....-..|++||+++++++++.+ +++.++.+
T Consensus 315 ~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~---~~~~~~~dv~vP~~~l~~~~~~~-~~~~~~~~------------ 378 (499)
T PRK11230 315 KAGATDVRLAQDEAERVRFWAGRKNAFPAVGRI---SPDYYCMDGTIPRRELPGVLEGI-ARLSQQYG------------ 378 (499)
T ss_pred hcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh---CCCeeEEeecCChHHHHHHHHHH-HHHHHHcC------------
Confidence 54432 111111 1122332221111111000 00001249999999999999998 67776421
Q ss_pred CCCCCCCccccccCCcEEEEEccccCCChhhHHHHHHHHHHHHHHHHHcCCc-eeecCCCCCChHHHHHhhh-hhHHHHH
Q 009793 426 RNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIK-VKQYLPYHRNKEEWIKHFG-SKWNTFA 503 (525)
Q Consensus 426 ~~~~~~~~~~~~~dg~~h~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~g-~~~yl~~~~~~~~w~~~~G-~~~~~~~ 503 (525)
+......|+|+|++|+++.+ +..++++.+++.++.+++++.+.++|.. ...|-......+.|...|| ..++.|+
T Consensus 379 ---~~~~~~gH~GdGn~H~~i~~-~~~~~~~~~~~~~~~~~l~~~~~~~GG~is~EHGiG~~k~~~l~~~~g~~~~~~m~ 454 (499)
T PRK11230 379 ---LRVANVFHAGDGNMHPLILF-DANEPGELERAEALGGKILELCVEVGGSITGEHGVGREKINQMCAQFNSDEITLFH 454 (499)
T ss_pred ---CeEEEEEEeCCCcceeeecC-CCCCHHHHHHHHHHHHHHHHHHHHcCCeEeeeccCchhhHHHHHHhcCHHHHHHHH
Confidence 11122358999999999865 5444555677788888888888765333 2222211111122233444 3899999
Q ss_pred HhhhcCCCcCcCCCCcccc
Q 009793 504 QRKAHFDPKMILSPGQRIF 522 (525)
Q Consensus 504 ~iK~~~DP~gilNPGk~~~ 522 (525)
+||+.|||+|||||||+|-
T Consensus 455 ~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 455 AVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHHHHcCCCcCCCCCeEeC
Confidence 9999999999999999973
No 5
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=2.7e-55 Score=459.38 Aligned_cols=392 Identities=20% Similarity=0.305 Sum_probs=305.1
Q ss_pred EEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCC-CcEEEEcCCccCcCCCCeEEEcC-CcEEEEcCCccHH
Q 009793 72 VLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMAD-GGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWI 149 (525)
Q Consensus 72 vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~-~gvvidl~~mn~i~~~~~i~id~-~~~v~v~aGv~~~ 149 (525)
||+|+|++||+++|++|+ ++++||+|||+|||+.|++.+. ++++|||++||+ ++++|+ +.+++||||+++.
T Consensus 1 Vv~P~s~eev~~iv~~a~--~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~-----i~~id~~~~~v~veaGv~~~ 73 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCH--EHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNK-----ILEIDVVNLTAVVQPGVRNL 73 (413)
T ss_pred CCCCCCHHHHHHHHHHHH--HcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCc-----eeEEcCCCCEEEEcCCccHH
Confidence 688999999999999998 8999999999999999888764 789999999997 689998 8999999999999
Q ss_pred HHHHHHHhCCCc-ccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCC-----CChhHHHHH
Q 009793 150 DVLNATLEHGLA-PASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSAL-----KNSELFYAA 223 (525)
Q Consensus 150 ~l~~~l~~~gl~-p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~-----~~~dl~~~~ 223 (525)
+|+++|.++|++ |+++++...+||||+++++++|.++.+||.++|+|++++||++||++++++.. .++||++++
T Consensus 74 ~l~~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~ 153 (413)
T TIGR00387 74 ELEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLF 153 (413)
T ss_pred HHHHHHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhc
Confidence 999999999985 77888888899999999999899999999999999999999999999998752 478999999
Q ss_pred hcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHHccCcCCccccccccceeeecCCccCCCcccCCCC
Q 009793 224 LGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPP 303 (525)
Q Consensus 224 ~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~ 303 (525)
+||+|+|||||+++||++|.|+....+.+.|++++++.+++..+.+. ++.|+++|++|...+.. +.. +.
T Consensus 154 ~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~p~a~el~d~~~~~~---~~~-----~~- 222 (413)
T TIGR00387 154 VGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAA--GIIPAGMEFLDNLSIKA---VED-----IS- 222 (413)
T ss_pred ccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhc--CCCcEEEEccCHHHHHH---HHH-----hc-
Confidence 99999999999999999999999888999999999999999988764 37899999998764311 000 00
Q ss_pred CCCcccccccccccEEEEEEEEeeeCCCCchhhHHHHHHHHhhccCCCCccc-c-cc-chHHHHHHhhhhhhHHHhhccC
Q 009793 304 SDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMF-E-KD-VSYVEFLNRVRSGELKLESQGL 380 (525)
Q Consensus 304 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~l 380 (525)
...+|.+..+++++++. + ..++++++++.+.+.+...++... . .+ .....+|...+..........
T Consensus 223 -----~~~~p~~~~~~l~v~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~- 291 (413)
T TIGR00387 223 -----GIGLPKDAGAILLVEID----G-VHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS- 291 (413)
T ss_pred -----CCCCCCCCceEEEEEec----C-CcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-
Confidence 01234444567888863 3 445677777888777755333211 1 11 112233322211111111000
Q ss_pred ccCCccceeeccccccHHHHHhHHHHHhhhhcCCCCccEEEEeCCCCCCCCCccccccCCcEEEEEccccCCChhhHHHH
Q 009793 381 WEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAF 460 (525)
Q Consensus 381 W~~r~~~~d~~vP~~~l~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~~h~~i~~~~~~~~~~~~~~ 460 (525)
....+.|++||+++++++++.+ +++.++.. +.....+|+|+|++|+++.+ +..++++.+++
T Consensus 292 --~~~~~~d~~vp~~~l~~~~~~~-~~~~~~~~---------------~~~~~~gH~g~g~lh~~~~~-~~~~~~~~~~~ 352 (413)
T TIGR00387 292 --PLYLIEDGTVPRSKLPEALRGI-ADIARKYD---------------FTIANFGHAGDGNLHPTILT-DPEDKGEMERV 352 (413)
T ss_pred --CCcceeEEecCHHHHHHHHHHH-HHHHHHcC---------------CeEEEEEEecCCccccccCC-CCCCHHHHHHH
Confidence 0112359999999999999998 57665421 11123468999999999765 55555667777
Q ss_pred HHHHHHHHHHHHH--------cCCc--eeecCCCCCChHHHHHhhhhhHHHHHHhhhcCCCcCcCCCCc
Q 009793 461 DDQNKEILKFCEN--------AGIK--VKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQ 519 (525)
Q Consensus 461 ~~~~~~l~~~~~~--------~G~g--~~~yl~~~~~~~~w~~~~G~~~~~~~~iK~~~DP~gilNPGk 519 (525)
.++.+++.+.+.+ ||+| +++|+...+++. .++.|++||+.|||+|||||||
T Consensus 353 ~~~~~~~~~~~~~~gG~is~eHG~G~~r~~~~~~~~~~~--------~~~~~~~iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 353 EEAGGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEK--------ELETMRAIKKAFDPDNILNPGK 413 (413)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccCcHhHHHHHHHhcCHH--------HHHHHHHHHHHcCcCcCCCCcC
Confidence 8888889988877 6888 777887666666 8999999999999999999997
No 6
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=1.2e-55 Score=425.56 Aligned_cols=423 Identities=17% Similarity=0.245 Sum_probs=333.9
Q ss_pred ccccccccCceeecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCC-C
Q 009793 36 HKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMAD-G 114 (525)
Q Consensus 36 ~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~-~ 114 (525)
+-.+.+...+.+.++++++..|++||.+.|++....|++|+|++||++++++|+ +.++.|+|+||.|++.|+++|. +
T Consensus 57 ~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn--~~kLAVVPQGGNTgLVGgSVPvfD 134 (511)
T KOG1232|consen 57 AYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCN--DRKLAVVPQGGNTGLVGGSVPVFD 134 (511)
T ss_pred HHHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHHHHHHHhhc--cccEEEecCCCCcccccCcccchH
Confidence 344566777889999999999999999999999999999999999999999998 8999999999999999999995 8
Q ss_pred cEEEEcCCccCcCCCCeEEEcC-CcEEEEcCCccHHHHHHHHHhCCC-cccccCCCCceeEeeecCCCCCCCCccccCcc
Q 009793 115 GVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVLNATLEHGL-APASWTDYLYLTVGGTLSNAGISGQTFRYGPQ 192 (525)
Q Consensus 115 gvvidl~~mn~i~~~~~i~id~-~~~v~v~aGv~~~~l~~~l~~~gl-~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~ 192 (525)
.|||+|.+||+ +.++|+ .+.++++||+.++++.++|.++|+ +|.+.++-.+|.|||++++++.|.+-.+||+.
T Consensus 135 EiVlsl~~mNK-----i~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsL 209 (511)
T KOG1232|consen 135 EIVLSLGLMNK-----ILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSL 209 (511)
T ss_pred HHhhhhhhhcc-----ccccccccceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEeccc
Confidence 99999999997 799999 999999999999999999999996 69999999999999999988889999999999
Q ss_pred cccEEEEEEEecCccEEEecC-----CCChhHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHH
Q 009793 193 ISNVYELDVVTGKGELMTCSA-----LKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYL 267 (525)
Q Consensus 193 ~d~v~~~~vV~~dG~~~~~~~-----~~~~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 267 (525)
..+|+++|+|+|+|+++.... ..++|+.++++||+|++||||++++-+.|.|+.....++..+++++..+.....
T Consensus 210 HgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~fv~A 289 (511)
T KOG1232|consen 210 HGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVFVEA 289 (511)
T ss_pred ccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHHHHH
Confidence 999999999999999987653 247899999999999999999999999999998877777777777665544333
Q ss_pred HHccCcCCccccccccceeeecCCccCCCcccCCCCCCCcc-cccccccccEEEEEEEEeeeCCCCchhhHHHHHHHHhh
Q 009793 268 ISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPK-IISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKG 346 (525)
Q Consensus 268 ~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 346 (525)
.+ ...|.+++++++++..+. +..+.... -.++..+.+.++++|.++ .++++-++.+.++++.
T Consensus 290 ks-------~L~EILSafElmD~~s~~------~~~~~l~~l~~pl~~~~pFyiLiETsG----Sn~dhD~eKl~afl~d 352 (511)
T KOG1232|consen 290 KS-------NLTEILSAFELMDNASME------LVLEYLKDLHFPLEDEHPFYILIETSG----SNKDHDEEKLTAFLED 352 (511)
T ss_pred HH-------HHHHHHHHHHhhcchHHH------HHHHHhccCCCCccCCCceEEEEEecC----CCccccHHHHHHHHHH
Confidence 22 255667777776664333 11111110 123455578899999864 4566667778887777
Q ss_pred ccCCCCccccccchHHHHHHhhhhhhHHHhhccCccCCccc------------eeeccccccHHHHHhHHHHHhhhhcCC
Q 009793 347 LSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPW------------LNLFLPKSRISDFNKGVFRDIVLKRNI 414 (525)
Q Consensus 347 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~~r~~~------------~d~~vP~~~l~~~~~~i~~~l~~~~~~ 414 (525)
+.. .|.+ .| .+ .++++.+...+|++|+.. .|+++|.+.+-++++.+.+++....
T Consensus 353 ~le-k~lI--sD--------Gv-~a~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~eRl~~~~-- 418 (511)
T KOG1232|consen 353 CLE-KGLI--SD--------GV-LAQDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMKERLGEAA-- 418 (511)
T ss_pred hhh-hccc--cc--------ce-ecCCHHHHHHHHHHHhccHHHHHhcCCEEEeeccccHHHHHHHHHHHHHhhhhhh--
Confidence 643 3332 12 12 467777888899988742 5999999999999998866665421
Q ss_pred CCccEEEEeCCCCCCCCCccccccCCcEEEEEccccCCChhhHHHHHHHH-HHHHHHH--------HHcCCc--eeecCC
Q 009793 415 TTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQN-KEILKFC--------ENAGIK--VKQYLP 483 (525)
Q Consensus 415 ~~~~i~~~~~~~~~~~~~~~~~~~dg~~h~~i~~~~~~~~~~~~~~~~~~-~~l~~~~--------~~~G~g--~~~yl~ 483 (525)
..+.+ ...+|.||||+|.++.. ...+ ++++.+. --+++.+ ++||+| +++|+.
T Consensus 419 l~~d~------------~gyGHlGDgNlHLNia~-~efn----~~iek~lePfvYE~vs~~~GSISAEHGiG~lKk~~~~ 481 (511)
T KOG1232|consen 419 LVGDI------------VGYGHLGDGNLHLNIAV-REFN----KEIEKLLEPFVYEWVSKHKGSISAEHGIGFLKKPYLH 481 (511)
T ss_pred hhhcc------------cccccccCCceeEeeeH-HHHh----HHHHHhhhhHHHHHHHhcCCceeccccccccccCccc
Confidence 00111 12368999999999987 3221 2222221 1123333 467999 999999
Q ss_pred CCCChHHHHHhhhhhHHHHHHhhhcCCCcCcCCCCccc
Q 009793 484 YHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRI 521 (525)
Q Consensus 484 ~~~~~~~w~~~~G~~~~~~~~iK~~~DP~gilNPGk~~ 521 (525)
+..+|+ .+..|+.+|+.|||||||||.|.+
T Consensus 482 ysKspe--------~i~lmk~lKn~~DPngILnPYK~i 511 (511)
T KOG1232|consen 482 YSKSPE--------EILLMKDLKNLFDPNGILNPYKYI 511 (511)
T ss_pred cCCCHH--------HHHHHHHHHhhcCCcccCCccccC
Confidence 999999 899999999999999999999975
No 7
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.1e-48 Score=415.30 Aligned_cols=435 Identities=20% Similarity=0.277 Sum_probs=312.4
Q ss_pred CceeecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCc
Q 009793 44 GARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMAL 123 (525)
Q Consensus 44 ~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~m 123 (525)
...+.+++.....|..||+ .++..|.+|+.|+|++||+++|++|+ ++++||+|||+||++.|++.+.+|++|||++|
T Consensus 8 ~~~~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~--~~~~~v~prG~gts~~g~~~~~~gvvl~l~~m 84 (459)
T COG0277 8 ELNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLAN--ENGIPVVPRGGGTSLSGGAVPDGGVVLDLSRL 84 (459)
T ss_pred ccceecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHH--HcCCeEEEECCCCCccccccCCCcEEEEchhh
Confidence 3448889999999999998 67889999999999999999999998 99999999999999999998845999999999
Q ss_pred cCcCCCCeEEEcC-CcEEEEcCCccHHHHHHHHHhCCCc-ccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEE
Q 009793 124 KNYRNGNGITVGS-GFYADVAGEQLWIDVLNATLEHGLA-PASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDV 201 (525)
Q Consensus 124 n~i~~~~~i~id~-~~~v~v~aGv~~~~l~~~l~~~gl~-p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~v 201 (525)
|+ ++++|+ +++++||||+++.+|.++|.++|++ |+++++...+||||+++++++|.++.+||.++|+|+++++
T Consensus 85 n~-----i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~v 159 (459)
T COG0277 85 NR-----ILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRV 159 (459)
T ss_pred cc-----hhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEE
Confidence 97 568998 9999999999999999999999985 6677776689999999999999999999999999999999
Q ss_pred EecCccEEEecCC-----CChhHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHH--ccCcC
Q 009793 202 VTGKGELMTCSAL-----KNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLIS--MNGRR 274 (525)
Q Consensus 202 V~~dG~~~~~~~~-----~~~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 274 (525)
|++||++++++.. +++||+++++||+|||||||++|+|+.|.|+........+++.+.+......... ...+.
T Consensus 160 V~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
T COG0277 160 VLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGV 239 (459)
T ss_pred EcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCC
Confidence 9999999999874 4589999999999999999999999999999988999888888877653332221 00013
Q ss_pred CccccccccceeeecCCccCCCcccCCCCCCCcccccccccccEEEEEEEEeeeCCCCchhhHHHHHHHHhhccCCC---
Q 009793 275 QKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLP--- 351 (525)
Q Consensus 275 ~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 351 (525)
.+...++++.. .. ... .+... ..++.....++++++.+ .+...+......+.+.+....
T Consensus 240 ~~~~~e~~~~~-~~---~~~----~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 301 (459)
T COG0277 240 IPAALEFMDRP-IK---AAE----AYLGG------GALPLEAPARLLVEVEG----SDEAAVDEALEALGELLLEHGLAR 301 (459)
T ss_pred Cceeeeecchh-HH---HHH----Hhccc------cCCCCCCceEEEEEEcC----CcHHHHHHHHHHHHHHHHhcCCce
Confidence 45556666553 00 000 00000 01222223566777532 233455666666666553322
Q ss_pred Ccccccc-chHHHHHHhhhhhhHHHhhccCccCCccceeeccccccHHHHHhHHHHHhhhhcCCCCccEEEEeCCCCCCC
Q 009793 352 GFMFEKD-VSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWD 430 (525)
Q Consensus 352 g~~~~~~-~~~~~~~~~~~~~~~~~~~~~lW~~r~~~~d~~vP~~~l~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~~~ 430 (525)
......+ .....+|........ ....+.....+.|+++|.+.+++++.++ .++..+... ...
T Consensus 302 ~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~~~~d~~vp~~~~~~~~~~~-~~~~~~~~~-------------~~~ 364 (459)
T COG0277 302 DLVVAQDLAEAARLWLARKGALA---AAGALGPGVIQEDVVVPLEALPEFLREI-LALLDKAGL-------------ALR 364 (459)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHH---HHHhhCCCccccceeeeHHHHHHHHHHH-HHHHHhcCC-------------Cce
Confidence 1111111 112222222111111 1111100023359999999999999988 466543110 011
Q ss_pred CCccccccCCcEEEEEccccCCChhhHHHHHHHHHHHHHHHHHcCCceeecCCCCCChHHHHHhh-hhhHHHHHHhhhcC
Q 009793 431 DRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHF-GSKWNTFAQRKAHF 509 (525)
Q Consensus 431 ~~~~~~~~dg~~h~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~g~~~yl~~~~~~~~w~~~~-G~~~~~~~~iK~~~ 509 (525)
.....|++||++|+.+........+..+...+..+.+.+.+.++|.....+........+|...| |..|..|+++|++|
T Consensus 365 ~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~~~~~~~~~~k~~~ 444 (459)
T COG0277 365 VALFGHAGDGNLHLNILYDVGDEAEELARAEALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPGEAWALLRAIKRAF 444 (459)
T ss_pred eeeecccCCCcceeeeccCCCccHHHHHHHHHHHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHhHHHHHHHHHHHhc
Confidence 23456899999999997622222456677777888888888887655443333333444554433 45899999999999
Q ss_pred CCcCcCCCCccc
Q 009793 510 DPKMILSPGQRI 521 (525)
Q Consensus 510 DP~gilNPGk~~ 521 (525)
||+|||||||++
T Consensus 445 DP~~i~npg~~~ 456 (459)
T COG0277 445 DPNGIFNPGKLF 456 (459)
T ss_pred CCCCCCCCCccC
Confidence 999999999986
No 8
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-39 Score=334.30 Aligned_cols=241 Identities=14% Similarity=0.146 Sum_probs=213.6
Q ss_pred ccccccccCceeecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCC-
Q 009793 36 HKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADG- 114 (525)
Q Consensus 36 ~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~- 114 (525)
.+|+++..+++|.+++..+..|++||.. +...|.+||+|.|++||+++||+|+ ++++||+||||||++.|++.|.+
T Consensus 7 ~~L~~IvG~~~Vltd~~~l~~Y~~D~r~-~~g~P~AVV~P~SteEVa~IVklC~--e~~vPVIPRGgGTGLtGGAvP~~~ 83 (564)
T PRK11183 7 NELTRIVGSSHVLTDPAKTERYRKGFRS-GQGDALAVVFPGTLLELWRVLQACV--AADKIIIMQAANTGLTGGSTPNGN 83 (564)
T ss_pred HHHHHhcCcccEecCHHHHHHhccCccc-cCCCCCEEEecCCHHHHHHHHHHHH--HcCCeEEEeCCCcccccCcccCCC
Confidence 4677778888999999999999999864 6788999999999999999999998 99999999999999999999852
Q ss_pred -----cEEEEcCCccCcCCCCeEEEcCCcEEEEcCCccHHHHHHHHHhCCCcccc-c-CCCCceeEeeecCCCCCCCCcc
Q 009793 115 -----GVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPAS-W-TDYLYLTVGGTLSNAGISGQTF 187 (525)
Q Consensus 115 -----gvvidl~~mn~i~~~~~i~id~~~~v~v~aGv~~~~l~~~l~~~gl~p~~-~-~~~~~~tvGG~~~~~g~g~~~~ 187 (525)
+|||||++||+ ++++|.+.+++|+||+++.+|+++|+++|++|+. + ++...|||||+|+||+.|....
T Consensus 84 ~~dR~gVVIsl~RMNr-----IleID~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vl 158 (564)
T PRK11183 84 DYDRDIVIISTLRLDK-----IQLLNNGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQ 158 (564)
T ss_pred CCcCCEEEEEhhHcCC-----cEEECCCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhhe
Confidence 79999999997 6888877789999999999999999999987655 4 5555789999999998899999
Q ss_pred ccCcccccEEEEEEEecCccE-------EEecCC----------CCh---------------------------------
Q 009793 188 RYGPQISNVYELDVVTGKGEL-------MTCSAL----------KNS--------------------------------- 217 (525)
Q Consensus 188 ~yG~~~d~v~~~~vV~~dG~~-------~~~~~~----------~~~--------------------------------- 217 (525)
+||.+.++++. ++|++||++ +..+.. .++
T Consensus 159 Rgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfn 237 (564)
T PRK11183 159 RGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFN 237 (564)
T ss_pred Ecchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCccccc
Confidence 99999999999 999999999 544331 133
Q ss_pred -hHHHHH--hcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHHccCcCCccccccccceee
Q 009793 218 -ELFYAA--LGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLI 287 (525)
Q Consensus 218 -dl~~~~--~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~ 287 (525)
|+.+++ .||+|+|||| +++|+++|.|+..+++.+.|++.+++.+..+.++..- +..|.++|||+...+
T Consensus 238 aDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~-~~lP~a~Eym~r~~~ 308 (564)
T PRK11183 238 ADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANF-KNLPVAGEYMHRDAF 308 (564)
T ss_pred CCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhC-CCCceeEeecCHHHH
Confidence 899999 9999999999 9999999999999999999999999999999998752 378999999987543
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=5.4e-39 Score=324.70 Aligned_cols=182 Identities=15% Similarity=0.184 Sum_probs=157.0
Q ss_pred CHHHHHHHHHHHHcCCCCcEEEEecCCCC-CCCCCcCCCcEEEEcCCccCcCCCCeEEEcC-CcEEEEcCCccHHHHHHH
Q 009793 77 STEDIVALVKAAYNSSVPFKIAAKGRGHS-VRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVLNA 154 (525)
Q Consensus 77 ~~~ev~~~v~~a~~~~~~~~v~~~g~G~~-~~g~~~~~~gvvidl~~mn~i~~~~~i~id~-~~~v~v~aGv~~~~l~~~ 154 (525)
..+||+++|++|+ ++++||+|+|+||+ ..|. . .++++|||++||+ ++++|+ +.+++|+||+++.+|+++
T Consensus 3 ~~~ev~~~v~~A~--~~~~~v~~~GgGt~~~~g~-~-~~~~vldl~~ln~-----Ile~d~~~~~vtV~AG~~l~el~~~ 73 (352)
T PRK11282 3 ISAALLERVRQAA--ADGTPLRIRGGGSKDFYGR-A-LAGEVLDTRAHRG-----IVSYDPTELVITARAGTPLAELEAA 73 (352)
T ss_pred hHHHHHHHHHHHH--HCCCeEEEECCCCCCCCCC-C-CCCeEEEcccCCC-----cEEEcCCCCEEEECCCCCHHHHHHH
Confidence 4799999999997 89999999999985 4455 2 3678999999997 689999 999999999999999999
Q ss_pred HHhCCCc-ccccCCCC-ceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCC-----CChhHHHHHhcCC
Q 009793 155 TLEHGLA-PASWTDYL-YLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSAL-----KNSELFYAALGGL 227 (525)
Q Consensus 155 l~~~gl~-p~~~~~~~-~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~-----~~~dl~~~~~Gs~ 227 (525)
|.++|++ |.+++... .+||||+++++++|+.+.+||.++|+|+++++|++||++++++.+ +++||+++++||+
T Consensus 74 L~~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~ 153 (352)
T PRK11282 74 LAEAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL 153 (352)
T ss_pred HHHcCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC
Confidence 9999974 55555433 489999999999999999999999999999999999999999763 4789999999999
Q ss_pred CcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHH
Q 009793 228 GQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLI 268 (525)
Q Consensus 228 G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 268 (525)
|+|||||++|||++|.|+...++.+.++ ..++.+.+..+.
T Consensus 154 GtLGVitevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~ 193 (352)
T PRK11282 154 GTLGVLLEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWG 193 (352)
T ss_pred chhhhheEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHh
Confidence 9999999999999999998777666654 455555555554
No 10
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=6.2e-37 Score=322.08 Aligned_cols=201 Identities=17% Similarity=0.254 Sum_probs=182.8
Q ss_pred ccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcC-C
Q 009793 59 SDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-G 137 (525)
Q Consensus 59 ~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~-~ 137 (525)
++|++.+...|..+++|+|++||+++|+.|+ +++.+|+|+|+|||+.|.+.+ ++.+|||++||+ ++++|+ .
T Consensus 52 ~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~--~~g~~Vr~~GsGhS~sg~a~t-~g~lldL~~ln~-----Vl~vD~~~ 123 (541)
T TIGR01676 52 SNWSGTHEVLTRTFHQPEAIEELEGIVKQAN--EKKARIRPVGSGLSPNGIGLS-RAGMVNLALMDK-----VLEVDEEK 123 (541)
T ss_pred cccCCccccCcceEECCCCHHHHHHHHHHHH--HcCCcEEEECCCcCCCCcccC-CCeEEEhhhCCC-----CEEEcCCC
Confidence 6899888999999999999999999999997 889999999999999998887 455899999997 789999 8
Q ss_pred cEEEEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCCCCh
Q 009793 138 FYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNS 217 (525)
Q Consensus 138 ~~v~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~~~~ 217 (525)
++|+|+||+++.+|.++|.++|+.++..++...+||||+++++++|. +.+||..+|+|+++++|++||+++++++.+++
T Consensus 124 ~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGt-g~~~G~l~d~V~~l~lVta~G~vv~~s~~~~p 202 (541)
T TIGR01676 124 KRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHGT-GAKLPPIDEQVIAMKLVTPAKGTIEISKDKDP 202 (541)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcCC-CCCCCCHHHhEEEEEEEECCCCEEEECCCCCH
Confidence 99999999999999999999999878888888999999999998886 45899999999999999999999999998899
Q ss_pred hHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHHc
Q 009793 218 ELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISM 270 (525)
Q Consensus 218 dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (525)
|||++++||+|+|||||++||+++|.+..+..... .+++++.+..+++++.
T Consensus 203 dLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~--~~~~e~l~~~~~~~~~ 253 (541)
T TIGR01676 203 ELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFI--SNMKDIKKNHKKFLAD 253 (541)
T ss_pred HHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEe--cCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999987544332 5778888887777664
No 11
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=100.00 E-value=4.7e-39 Score=311.15 Aligned_cols=425 Identities=17% Similarity=0.236 Sum_probs=302.8
Q ss_pred cCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCC-cCCC----cEEEEcCCccCcCCCCeEEEcC
Q 009793 62 GNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQA-MADG----GVVVEMMALKNYRNGNGITVGS 136 (525)
Q Consensus 62 ~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~-~~~~----gvvidl~~mn~i~~~~~i~id~ 136 (525)
-+.++..|+.||.|+..+||.++|+.|+ ++++-++|.||||+.+++- .|.. -+.+||+.||+ ++.+|.
T Consensus 154 egkf~RiPDiVvWP~chdevVkiv~lA~--khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnr-----iLWidr 226 (613)
T KOG1233|consen 154 EGKFPRIPDIVVWPKCHDEVVKIVELAM--KHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNR-----ILWIDR 226 (613)
T ss_pred cCccCCCCceEecccchHHHHHHHHHHh--hcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhh-----eeEecc
Confidence 3457899999999999999999999997 9999999999999998554 4432 27789999997 799998
Q ss_pred -CcEEEEcCCccHHHHHHHHHhCCCc-ccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEE-ecC
Q 009793 137 -GFYADVAGEQLWIDVLNATLEHGLA-PASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMT-CSA 213 (525)
Q Consensus 137 -~~~v~v~aGv~~~~l~~~l~~~gl~-p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~-~~~ 213 (525)
+.++.+|+|++.++|.+.|.+.|+. ...|.|..-+|+||++++.++|+.-..||...|-|+-+++|+|.|.+.+ |..
T Consensus 227 eNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~ 306 (613)
T KOG1233|consen 227 ENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQV 306 (613)
T ss_pred ccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcC
Confidence 9999999999999999999999984 8888888899999999999999999999999999999999999998754 222
Q ss_pred ---CCChhHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHHccCcCCccccccccceeeecC
Q 009793 214 ---LKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQ 290 (525)
Q Consensus 214 ---~~~~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~ 290 (525)
..+||.-+.+.||+|||||||++|+|++|.|+..+...+.|+++++.....+++... +.+|+++++||+-.++..
T Consensus 307 PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~REvA~q--RCqPAS~RLMDN~QF~fG 384 (613)
T KOG1233|consen 307 PRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFREVAIQ--RCQPASLRLMDNDQFVFG 384 (613)
T ss_pred CcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHHHHHH--hcCchheeeecccceecc
Confidence 368999999999999999999999999999999999999999999999999888765 389999999999877654
Q ss_pred CccC----CCcccCCCC--CC-Cccccccccc--ccEEEEEEEEeeeCCCCchhhHHHHHHHHhhccCCCCccccccchH
Q 009793 291 GSLD----NWRSSFFPP--SD-HPKIISQVKT--HAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSY 361 (525)
Q Consensus 291 ~~~~----~~~~~~~~~--~~-~~~~~~l~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 361 (525)
..+. .|..++... +. .-..+++... ..+.+++| ++.+++++.-+++.+++.+.+|.....+...
T Consensus 385 qALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfE-------Gdre~V~qhE~~~y~iAekF~G~~aG~~NGq 457 (613)
T KOG1233|consen 385 QALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFE-------GDREEVDQHEERLYKIAEKFHGVVAGAENGQ 457 (613)
T ss_pred cccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhhheec-------ccHHHHHHHHHHHHHHHHHhCCccccccccc
Confidence 2221 222211100 00 0011222211 23345554 2777777777777777666677654444333
Q ss_pred HHHHHhhhhhhHHHhhccCc-cCCccceeeccccccHHHHHhHHHHHhhhhc--CCCCccEEEEeCCCCCCCCCccccc-
Q 009793 362 VEFLNRVRSGELKLESQGLW-EVPHPWLNLFLPKSRISDFNKGVFRDIVLKR--NITTGPVLVYPMNRNKWDDRMSAVI- 437 (525)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~lW-~~r~~~~d~~vP~~~l~~~~~~i~~~l~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~- 437 (525)
..|...+..+.-. .-++- ......+++++||+++..+.+.+.+.+.... .+-.++++..+ +....+
T Consensus 458 rGY~LTfvIAYiR--Dlgl~~gvlgESFETSvPWDrv~~LCRnVKer~~rEck~~gv~~~~~s~C--------RVTQtYD 527 (613)
T KOG1233|consen 458 RGYRLTFVIAYIR--DLGLNHGVLGESFETSVPWDRVLSLCRNVKERMKRECKAQGVTHPVLSNC--------RVTQTYD 527 (613)
T ss_pred cceEEEEeHHHHH--hhcccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCcccccce--------eEEEEec
Confidence 3332222122110 00100 0111234899999999999887754444321 12122222211 222222
Q ss_pred cCCcEEEEEccccCCC---h-hhHHHHH-HHHHHHHHHH----HHcCCc--eeecCCCCCChHHHHHhhhhhHHHHHHhh
Q 009793 438 PDEDVFYTVGFLHSSG---F-DEWEAFD-DQNKEILKFC----ENAGIK--VKQYLPYHRNKEEWIKHFGSKWNTFAQRK 506 (525)
Q Consensus 438 ~dg~~h~~i~~~~~~~---~-~~~~~~~-~~~~~l~~~~----~~~G~g--~~~yl~~~~~~~~w~~~~G~~~~~~~~iK 506 (525)
...++++.++| +..+ | +-.++.+ +..+|++... .+||+| ++.|+....+.. ....++++|
T Consensus 528 AGACiYFYFgF-n~rg~~dplevfe~iE~aARdEIlacGGSlSHHHGVGKiRkqW~~~~~~~v--------G~~llka~K 598 (613)
T KOG1233|consen 528 AGACIYFYFGF-NARGLKDPLEVFERIETAARDEILACGGSLSHHHGVGKIRKQWMLTTNGAV--------GIALLKAIK 598 (613)
T ss_pred CceEEEEEEee-ccccCCchHHHHHHHHHHhHHHHHhcCCcccccccchHHHHHHHHhhhhhH--------hHHHHHHHH
Confidence 23467888887 6653 2 1223333 3457777755 355888 667776555655 889999999
Q ss_pred hcCCCcCcCCCCccc
Q 009793 507 AHFDPKMILSPGQRI 521 (525)
Q Consensus 507 ~~~DP~gilNPGk~~ 521 (525)
+.+||+|||..++++
T Consensus 599 ~~lDP~NIFa~~NLl 613 (613)
T KOG1233|consen 599 SELDPANIFASANLL 613 (613)
T ss_pred HhcChhhhccccccC
Confidence 999999999988764
No 12
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=7.1e-37 Score=319.93 Aligned_cols=399 Identities=14% Similarity=0.153 Sum_probs=255.8
Q ss_pred ccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcC-C
Q 009793 59 SDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-G 137 (525)
Q Consensus 59 ~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~-~ 137 (525)
++|++.+...|.+|++|+|++||+++|+.|+ + ||+++|+|||+.+.+.. +|++|||++||+ ++++|+ .
T Consensus 2 ~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~--~---~v~~~G~Ghs~~~~~~~-~g~~idl~~l~~-----i~~~d~~~ 70 (419)
T TIGR01679 2 SNWSGEQVAAPSAIVRPTDEGELADVIAQAA--K---PVRAVGSGHSFTDLACT-DGTMISLTGLQG-----VVDVDQPT 70 (419)
T ss_pred cCCCCCccCCCCeEECCCCHHHHHHHHHHhC--C---CEEEEeCCCCCCCcccC-CCEEEEhhHcCC-----ceeecCCC
Confidence 4688877889999999999999999999994 3 69999999999887665 789999999996 679998 8
Q ss_pred cEEEEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCCCCh
Q 009793 138 FYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNS 217 (525)
Q Consensus 138 ~~v~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~~~~ 217 (525)
++++||||+++.+|.++|.++|+.++..++...+||||+++++++|. +.+||...|+|+++++|++||+++++++.+|+
T Consensus 71 ~~v~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~ 149 (419)
T TIGR01679 71 GLATVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQ 149 (419)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCH
Confidence 99999999999999999999999876666667789999999988775 57999999999999999999999999999999
Q ss_pred hHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHHccCcCCccccccccceeeecCCccCCCc
Q 009793 218 ELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWR 297 (525)
Q Consensus 218 dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~ 297 (525)
|||++++||+|+|||||++|||++|.++..... ...+.+++.+..+++++... ..++ +.+ . ..+...
T Consensus 150 dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~--p-~~~~~~ 216 (419)
T TIGR01679 150 DMYLAARVSLGALGVISQVTLQTVALFRLRRRD--WRRPLAQTLERLDEFVDGHR-----HFEF---YVF--P-FAGKAL 216 (419)
T ss_pred HHHHHHHhCCCceEEEEEEEEEeecceEeEEEE--EecCHHHHHHHHHHHHhcCC-----eEEE---EEe--c-CCCeEE
Confidence 999999999999999999999999998764433 44577777777776665321 1221 111 0 000000
Q ss_pred ccCCCCCCCcccccccccccEEEEEEEEeeeCCCCchhhHHHHHHHHhhccCCCCccccccchHHHHHHhhhhhhHHHhh
Q 009793 298 SSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLES 377 (525)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (525)
- ...... ...+ .... .. ..+.....+..+...+...+... .... ..+ ... ..+...
T Consensus 217 ~-~~~~~~----~~~~-~~~~-~~----------~~~~~~~~~~~l~~~~~~~~~~~--~~~~-~~~-~~~---~~~~~~ 272 (419)
T TIGR01679 217 T-ITMDRS----DEQP-KPRQ-RD----------VDENFLGGLRLLRQTLRRFPSLR--PRLN-RLM-TNM---MSSETV 272 (419)
T ss_pred E-EECCcC----CCcc-cccc-cc----------hhhhHHHHHHHHHHhcccCchhH--HHHH-HHH-Hhh---cCCcee
Confidence 0 000000 0000 0000 00 00001111111111111111110 0000 000 000 000001
Q ss_pred ccCc-cC----C---ccceeeccccccHHHHHhHHHHHhhhhcCCCCccEEEEeCCCCCCCCCccccccCCcEEEEEccc
Q 009793 378 QGLW-EV----P---HPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFL 449 (525)
Q Consensus 378 ~~lW-~~----r---~~~~d~~vP~~~l~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~~h~~i~~~ 449 (525)
.+-| ++ | ..-.+++||.++..++++++++.+.+.+.....++.+.-.... +...+..++...+.+.+.+.
T Consensus 273 ~~~~~r~~~~~~~~~f~q~e~~iP~~~~~~al~~i~~~i~~~~~~~~~pve~R~~~ad--~~~LS~~~~r~~~~ia~~~~ 350 (419)
T TIGR01679 273 VDRAYKVFATQRKVRFNEMEYHLPRENGRKALQEVIDLVERRSPPVMFPIEVRFSAPD--DSWLSPFYGRPTCSIAVHQY 350 (419)
T ss_pred eccceEEecccccceeeEEEEecchhHHHHHHHHHHHHHHhcCCCccceEEEEEecCC--CcccCCCCCCCcEEEEEEEc
Confidence 1111 11 1 1113899999999999999954444432222234444433211 22334334444455444332
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHcCCceeecCCC--CCChHHHHHhhhhhHHHHHHhhhcCCCcCcCCC
Q 009793 450 HSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPY--HRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSP 517 (525)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~G~g~~~yl~~--~~~~~~w~~~~G~~~~~~~~iK~~~DP~gilNP 517 (525)
.. ..... ..+++.+...+ .|.++|+.+ ..++++.++.|- .++.++++|+++||+|+|.-
T Consensus 351 ~~---~~~~~---~~~~~e~i~~~--~gGRpHwgK~~~l~~~~l~~~YP-~~~~F~~~r~~~DP~g~F~n 411 (419)
T TIGR01679 351 AG---MDFES---YFRAVEPIFRR--YAGRPHWGKRHYLTAATLRERYP-RWDDFAAVRDDLDPDRRFLN 411 (419)
T ss_pred CC---CCHHH---HHHHHHHHHHH--cCCCCCchhccCCCHHHHHHHCc-CHHHHHHHHHHhCCCCccCC
Confidence 22 12233 34444444444 567777755 456778888885 79999999999999999863
No 13
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=3.7e-36 Score=314.69 Aligned_cols=200 Identities=20% Similarity=0.294 Sum_probs=180.2
Q ss_pred ccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcC-C
Q 009793 59 SDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-G 137 (525)
Q Consensus 59 ~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~-~ 137 (525)
++|++.+...|.+|+.|+|++||+++|+.|+ ++++||+++|+|||+.+.+.. +|++|||++||+ ++++|+ .
T Consensus 5 ~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~--~~~~~v~v~G~GhS~s~~~~~-~gvvIdl~~l~~-----i~~id~~~ 76 (438)
T TIGR01678 5 QNWAKTYSASPEVYYQPTSVEEVREVLALAR--EQKKKVKVVGGGHSPSDIACT-DGFLIHLDKMNK-----VLQFDKEK 76 (438)
T ss_pred EeCCCcccCCCCEEEecCCHHHHHHHHHHHH--HCCCeEEEECCCCCCCCCccC-CeEEEEhhhcCC-----ceEEcCCC
Confidence 5788878899999999999999999999997 899999999999999877665 799999999996 679998 7
Q ss_pred cEEEEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCCCCh
Q 009793 138 FYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNS 217 (525)
Q Consensus 138 ~~v~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~~~~ 217 (525)
.+++|+||+++.+|.++|.++|+.++..++.+.+||||+++++++|. +.+||..+|+|+++++|++||+++++++.+++
T Consensus 77 ~~vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~ 155 (438)
T TIGR01678 77 KQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNA 155 (438)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCCh
Confidence 89999999999999999999999877777777899999999988875 78999999999999999999999999999999
Q ss_pred hHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHH
Q 009793 218 ELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLIS 269 (525)
Q Consensus 218 dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (525)
|||++.+||+|+|||||++||+++|.+..... ....+++++.+..+.+.+
T Consensus 156 dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~--~~~~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 156 DVFQAARVSLGCLGIIVTVTIQVVPQFHLQET--SFVSTLKELLDNWDSHWK 205 (438)
T ss_pred hHHHHHhcCCCceEeeEEEEEEEEeccceEEE--EecCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999877544 355677777777666554
No 14
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=1.4e-35 Score=316.24 Aligned_cols=204 Identities=22% Similarity=0.239 Sum_probs=177.8
Q ss_pred HhccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEec-CCCCCCCCCcCC---CcEEEEcCCccCcCCCCeE
Q 009793 57 ASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKG-RGHSVRGQAMAD---GGVVVEMMALKNYRNGNGI 132 (525)
Q Consensus 57 ~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g-~G~~~~g~~~~~---~gvvidl~~mn~i~~~~~i 132 (525)
+-++|++.+...|.+|++|+|++||+++|++|+ ++++||.++| +||++.+.+.+. +|++|||++||+ ++
T Consensus 20 ~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~--~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~-----il 92 (557)
T TIGR01677 20 AYGAFPDRSTCRAANVAYPKTEAELVSVVAAAT--AAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNH-----VV 92 (557)
T ss_pred chhhcCCcccCCCCEEEecCCHHHHHHHHHHHH--HCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCC-----CE
Confidence 347899999999999999999999999999997 8999999995 689988766542 469999999996 68
Q ss_pred EEcC-CcEEEEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCc-cccCcccccEEEEEEEecCc----
Q 009793 133 TVGS-GFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQT-FRYGPQISNVYELDVVTGKG---- 206 (525)
Q Consensus 133 ~id~-~~~v~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~-~~yG~~~d~v~~~~vV~~dG---- 206 (525)
++|+ +.+|+|+||+++.+|.+.|.++|+.++..++...+||||+++++++|... .+||...|+|+++++|++||
T Consensus 93 ~iD~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G 172 (557)
T TIGR01677 93 AVDATAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEG 172 (557)
T ss_pred EEeCCCCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccC
Confidence 9998 88999999999999999999999976666666678999999999888766 48899999999999999999
Q ss_pred --cEEEecCCCChhHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHH
Q 009793 207 --ELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLIS 269 (525)
Q Consensus 207 --~~~~~~~~~~~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (525)
+++++++.+++|||++++||+|+|||||++|||++|.+.. .....+...+.+.+....+..
T Consensus 173 ~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~--~~~~~~~~~~~l~~~~~~~~~ 235 (557)
T TIGR01677 173 FAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKR--SVTYTMRDDSDFEDQFVTFGK 235 (557)
T ss_pred cceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEccccc--eEEEEcCCHHHHHHHHHHhhc
Confidence 8999999899999999999999999999999999999874 334566777777776665543
No 15
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=5.4e-33 Score=294.67 Aligned_cols=202 Identities=21% Similarity=0.257 Sum_probs=179.1
Q ss_pred hccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcC-
Q 009793 58 SSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS- 136 (525)
Q Consensus 58 ~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~- 136 (525)
-++|++.....|.+++.|+|++||+++|+.|+ ++++||+++|+|||+.+.+.. ++.+|||++||+ ++++|+
T Consensus 86 ~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~--~~g~~VrvvGsGhS~~~l~~t-d~glIdL~~l~~-----Il~vD~e 157 (573)
T PLN02465 86 VSNWSGTHEVQTRRYHQPESLEELEDIVKEAH--EKGRRIRPVGSGLSPNGLAFS-REGMVNLALMDK-----VLEVDKE 157 (573)
T ss_pred ccccccccCCCCCEEEEeCCHHHHHHHHHHHH--HcCCcEEEEcCCcCCCCeeeC-CCEEEECcCCCC-----cEEEeCC
Confidence 36888888999999999999999999999997 899999999999999888877 455789999996 689998
Q ss_pred CcEEEEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCCCC
Q 009793 137 GFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKN 216 (525)
Q Consensus 137 ~~~v~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~~~ 216 (525)
..+|+|+||+++.+|.+.|.++|+.++..++....||||+++++++|. +.++|...|+|+++++|+++|++++++..++
T Consensus 158 ~~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstGtHGt-G~~~g~i~d~V~~l~lVta~G~vv~~s~~~~ 236 (573)
T PLN02465 158 KKRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGAHGT-GARIPPIDEQVVSMKLVTPAKGTIELSKEDD 236 (573)
T ss_pred CCEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCCCCCc-CCCcCcHhheEEEEEEEECCCCEEEECCCCC
Confidence 789999999999999999999999877777777899999999887665 4579999999999999999999999999889
Q ss_pred hhHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHHc
Q 009793 217 SELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISM 270 (525)
Q Consensus 217 ~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (525)
+|||++.++|.|+|||||++||+++|.++..... ...+.++..+...++++.
T Consensus 237 pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~--~~~~~~~~~~~~~~~~~~ 288 (573)
T PLN02465 237 PELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHT--FVSNRKEIKKNHKKWLSE 288 (573)
T ss_pred HHHHhHhhccCCCCcEEEEEEEEEEecCceEEEE--EEecHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999864333 334677777777777664
No 16
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=100.00 E-value=4.2e-35 Score=283.02 Aligned_cols=275 Identities=58% Similarity=1.097 Sum_probs=218.2
Q ss_pred CCceEEEEEEeCChhhHHHHHHHHHHccCcCCccccccccceeeecC-CccCCCcccCCCCCCCcccccccc-cccEEEE
Q 009793 244 PKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQ-GSLDNWRSSFFPPSDHPKIISQVK-THAIIYC 321 (525)
Q Consensus 244 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~ 321 (525)
|+..+|+.+.|.|++++.+.++.++.... ...++|++++++++. +..++|+++++.+++..++..++. .++++|+
T Consensus 1 p~~vrw~r~~Y~df~~ft~DqE~Lis~~~---~~~~DYvEGfv~~n~~~~~~~w~s~~f~~~~~~~~~~l~~~~g~~lY~ 77 (281)
T PF09265_consen 1 PKRVRWIRLLYSDFATFTRDQERLISKPE---SGAFDYVEGFVILNRQGLINNWRSSFFSPSDPARISSLVSENGGWLYC 77 (281)
T ss_dssp -SEEEEEEEEES-HHHHHHHHHHHHTCBT---TTS-SEEEEEEEECCGHCCCCHCCSSSSCCCHHHHHHCHCCT-SEEEE
T ss_pred CCceEEEEeeeccHHHHHhhHHHHhcCCC---CCCcceeceeeeecCCCCcCCccCCCCCcccccccccccccCCCEEEE
Confidence 56788999999999999999999987521 223899999999995 888999988888777655566666 6789999
Q ss_pred EEEEeeeCCCCchhhHHHHHHHHhhccCCCCccccccchHHHHHHhhhhhhHHHhhccCccCCccceeeccccccHHHHH
Q 009793 322 LEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFN 401 (525)
Q Consensus 322 ~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~~r~~~~d~~vP~~~l~~~~ 401 (525)
+|++.+|+..+.+.+++.++.+++.++...|..+..|++|.+|++++..........++|..+|+|+++.||.+++.+|.
T Consensus 78 LE~a~~y~~~~~~~vd~~~~~LL~~L~~~~~~~f~~DvsY~dFL~Rv~~~E~~Lr~~G~WdvPHPWlnlfvP~s~i~dF~ 157 (281)
T PF09265_consen 78 LEVAKYYDPPTAPDVDQEVEALLAGLSFIPGLAFTEDVSYVDFLDRVHSSEEKLRSKGLWDVPHPWLNLFVPKSRIEDFD 157 (281)
T ss_dssp EEEEEEE-TTTHHHHHHHHHHHHTT--S-TT-EEEEEEEHHHHHTCCHHHHHHHHHCTTSSS----EEEEEEHHHHHHHH
T ss_pred EEEEEecCCccchhhHHHHHHHHhhcCCCcCceeeccccHHHHHHHhhhHHHHHHhcCCccccCcceeeecchHHHHHHH
Confidence 99999998767778899999999999888788888999999999999888889999999999999999999999999999
Q ss_pred hHHHHHhhhhcCCCCccEEEEeCCCCCCCCCccccccCCcEEEEEccccCC----ChhhHHHHHHHHHHHHHHHHHcCCc
Q 009793 402 KGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSS----GFDEWEAFDDQNKEILKFCENAGIK 477 (525)
Q Consensus 402 ~~i~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~~h~~i~~~~~~----~~~~~~~~~~~~~~l~~~~~~~G~g 477 (525)
+.+++.|+.. .++.+++++|||+..+|+.+.+...++++..+.++++.+. +++..+++.+.+++|++.|.+.|+|
T Consensus 158 ~~V~~~il~~-~~~~GpiLvYP~~~~kwd~~~s~v~Pde~vfylv~lLrsa~P~~~~~~l~~l~~qN~~il~~c~~agi~ 236 (281)
T PF09265_consen 158 RGVFKGILKD-DGNSGPILVYPLNRSKWDTRMSAVIPDEDVFYLVALLRSADPSDGPDDLERLLEQNRRILEFCRKAGIG 236 (281)
T ss_dssp HHCCCCCTTT-S-S-SEEEEEEEEGGGS-TTSS----SSSEEEEEEEEE---TTSSCCHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhhcc-CCCCceEEEEEecccccCCCCcccCCCCCeEEEEEEeCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCc
Confidence 9998888653 4555899999999999999999899999999999998875 5668999999999999999999999
Q ss_pred eeecCCCCCChHHHHHhhhhhHHHHHHhhhcCCCcCcCCCCcccc
Q 009793 478 VKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIF 522 (525)
Q Consensus 478 ~~~yl~~~~~~~~w~~~~G~~~~~~~~iK~~~DP~gilNPGk~~~ 522 (525)
.++|++.+.++++|++|||+.|+.+.+.|++|||++||+||+-||
T Consensus 237 ~k~Yl~~~~t~~dW~~HFG~~W~~f~~~K~~yDP~~IL~PGq~IF 281 (281)
T PF09265_consen 237 GKQYLPHYTTQEDWRRHFGPKWERFVERKRRYDPKAILAPGQGIF 281 (281)
T ss_dssp EEESS---SSHHHHHHHHGHHHHHHHHHHHHH-TT--B-GGG-SS
T ss_pred eEECCCCCCCHHHHHHHhchHHHHHHHHHHhCCchhhcCCCCCCC
Confidence 999999999999999999999999999999999999999999998
No 17
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.94 E-value=3.1e-25 Score=220.49 Aligned_cols=190 Identities=22% Similarity=0.249 Sum_probs=162.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcC-CcEEEEcC
Q 009793 66 KENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVAG 144 (525)
Q Consensus 66 ~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~-~~~v~v~a 144 (525)
.+...-|-+|+|++|+.++|+.|+ +++..+++.|.||+..+-++. +|.+|++.+||+ ++++|+ ..++|||+
T Consensus 47 ~c~aanv~yP~teaeL~~lVa~A~--~a~~kirvVg~gHSp~~l~ct-dg~lisl~~lnk-----Vv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 47 TCKAANVNYPKTEAELVELVAAAT--EAGKKIRVVGSGHSPSKLVCT-DGLLISLDKLNK-----VVEFDPELKTVTVQA 118 (518)
T ss_pred hhhhcccCCCCCHHHHHHHHHHHH--HcCceEEEecccCCCCcceec-cccEEEhhhhcc-----ceeeCchhceEEecc
Confidence 455666888999999999999997 889999999999999988887 679999999996 899999 89999999
Q ss_pred CccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCCCChhHHHHHh
Q 009793 145 EQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAAL 224 (525)
Q Consensus 145 Gv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~~~~dl~~~~~ 224 (525)
|+++.+|.+++++.|+..+..++....||||++++++||++...++.....+.-+.+..+||.++.+++..+|++|++..
T Consensus 119 GirlrQLie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAk 198 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAK 198 (518)
T ss_pred CcCHHHHHHHHHhcCccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhh
Confidence 99999999999999998777788889999999999988765553554444445555556799999999999999999999
Q ss_pred cCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHH
Q 009793 225 GGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQE 265 (525)
Q Consensus 225 Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~ 265 (525)
.|.|-||||.+|||++.|..+...+. .+.+..++.+...
T Consensus 199 vSLG~LGVIs~VTl~~vp~Fk~s~t~--~v~n~~dl~~d~~ 237 (518)
T KOG4730|consen 199 VSLGVLGVISQVTLSVVPAFKRSLTY--VVTNDSDLFKDWK 237 (518)
T ss_pred hcccceeEEEEEEEEEEecceeeeEE--EEechHHHHHHHH
Confidence 99999999999999999998874444 4456677555444
No 18
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=4.6e-27 Score=209.57 Aligned_cols=137 Identities=33% Similarity=0.521 Sum_probs=127.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcC-CcEEEEcCCcc
Q 009793 69 PVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQL 147 (525)
Q Consensus 69 p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~-~~~v~v~aGv~ 147 (525)
|.+|++|+|++||++++++|+ ++++|+.++|+||++.+.+...++++|||++||+ ++++|+ +.+++|+||++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~--~~~~~v~~~g~G~~~~~~~~~~~~ivi~~~~l~~-----i~~id~~~~~v~v~aG~~ 73 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFAN--ENGVPVRVRGGGHSWTGQSSDEGGIVIDMSRLNK-----IIEIDPENGTVTVGAGVT 73 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHH--HTTSEEEEESSSTTSSSTTSSTTEEEEECTTCGC-----EEEEETTTTEEEEETTSB
T ss_pred CcEEEEeCCHHHHHHHHHHHH--HcCCcEEEEcCCCCcccccccCCcEEEeeccccc-----cccccccceeEEEecccc
Confidence 789999999999999999998 8999999999999999877756999999999996 789998 99999999999
Q ss_pred HHHHHHHHHhCCCc-ccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEec
Q 009793 148 WIDVLNATLEHGLA-PASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCS 212 (525)
Q Consensus 148 ~~~l~~~l~~~gl~-p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~ 212 (525)
|.||+++|.++|++ |+++.+...+||||+++++++|..+..||..+|+|+++++|++||++++++
T Consensus 74 ~~~l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 74 WGDLYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred chhcccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 99999999998975 667777788999999999999999999999999999999999999999875
No 19
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.90 E-value=1.6e-23 Score=209.74 Aligned_cols=163 Identities=22% Similarity=0.238 Sum_probs=141.1
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCC-ccCcCCCCeEEEcCCcEEEEc
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMA-LKNYRNGNGITVGSGFYADVA 143 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~-mn~i~~~~~i~id~~~~v~v~ 143 (525)
....|.+++.|+|++||++++++|+ ++++|++++|+|||+.....+.+|++|||++ |++ ++++ +.+++|+
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~--~~~~p~~v~GgGsnll~~d~g~~gvvI~l~~~l~~------i~~~-~~~v~v~ 97 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLK--ENNIPVTVLGNGSNLLVRDGGIRGVVIRLGKGLNE------IEVE-GNRITAG 97 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHH--HcCCCEEEEeCCceEEecCCCcceEEEEecCCcce------EEec-CCEEEEE
Confidence 5678999999999999999999997 8999999999999987555444699999998 884 4555 6799999
Q ss_pred CCccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccC-cccccEEEEEEEecCccEEEecCCCChhHHHH
Q 009793 144 GEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYG-PQISNVYELDVVTGKGELMTCSALKNSELFYA 222 (525)
Q Consensus 144 aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG-~~~d~v~~~~vV~~dG~~~~~~~~~~~dl~~~ 222 (525)
||++|.+|.+++.++|+.+..+.+..++||||+++.++ |. || .+.|+|.++++|++||++++++.. |+++.
T Consensus 98 aG~~~~~L~~~l~~~Gl~gle~~~gipGTVGGai~~Na-G~----~G~~~~d~v~~v~vv~~~G~~~~~~~~---e~~~~ 169 (298)
T PRK13905 98 AGAPLIKLARFAAEAGLSGLEFAAGIPGTVGGAVFMNA-GA----YGGETADVLESVEVLDRDGEIKTLSNE---ELGFG 169 (298)
T ss_pred CCCcHHHHHHHHHHcCCCcchhccCCCcchhHHHHHcC-Cc----CceEhheeEEEEEEEeCCCCEEEEEHH---HcCCc
Confidence 99999999999999999777776777789999998443 21 77 689999999999999999998753 89999
Q ss_pred HhcCCCc--ceEEEEeEEEEEecC
Q 009793 223 ALGGLGQ--FGIITRARIALEPAP 244 (525)
Q Consensus 223 ~~Gs~G~--lGiit~~tl~l~p~p 244 (525)
++++.+. +||||+++|++.|..
T Consensus 170 yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 170 YRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CccccCCCCCEEEEEEEEEEcCCC
Confidence 9998744 899999999999974
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=5.9e-22 Score=198.01 Aligned_cols=176 Identities=23% Similarity=0.268 Sum_probs=145.8
Q ss_pred eecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCc
Q 009793 47 LHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNY 126 (525)
Q Consensus 47 v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i 126 (525)
+..+. .+..|+++ .+...|.+++.|+|++||++++++|+ ++++|++++|+|||+.......+|++|+|++|++
T Consensus 19 ~~~~~-~l~~~tt~---~igg~a~~vv~p~~~edv~~~l~~a~--~~~ip~~v~GgGSNll~~d~g~~GvvI~l~~l~~- 91 (305)
T PRK12436 19 VKQDE-MLKNHTHI---KVGGKADVFVAPTNYDEIQEVIKYAN--KYNIPVTFLGNGSNVIIKDGGIRGITVSLIHITG- 91 (305)
T ss_pred eecCC-cchhccCc---ccCceEEEEEecCCHHHHHHHHHHHH--HcCCCEEEEcCCeEEEEeCCCeeEEEEEeCCcCc-
Confidence 44443 66667665 25678999999999999999999997 8999999999999997433333589999988984
Q ss_pred CCCCeEEEcCCcEEEEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccCccc-ccEEEEEEEecC
Q 009793 127 RNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQI-SNVYELDVVTGK 205 (525)
Q Consensus 127 ~~~~~i~id~~~~v~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~-d~v~~~~vV~~d 205 (525)
++++ +.+++|+||+.|.+|.+++.++|+.+.++.++.++||||++..|+.+ ||... |.+.+++++++|
T Consensus 92 -----i~~~-~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGtVGGav~~NAGa-----yG~~~~dvl~~v~vv~~~ 160 (305)
T PRK12436 92 -----VTVT-GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVGGALYMNAGA-----YGGEISFVLTEAVVMTGD 160 (305)
T ss_pred -----EEEe-CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccchhHHHHhcCcc-----chhehheeeeEEEEEeCC
Confidence 5666 67899999999999999999999998888888899999999855422 88665 555588889999
Q ss_pred ccEEEecCCCChhHHHHHhcCC--CcceEEEEeEEEEEec
Q 009793 206 GELMTCSALKNSELFYAALGGL--GQFGIITRARIALEPA 243 (525)
Q Consensus 206 G~~~~~~~~~~~dl~~~~~Gs~--G~lGiit~~tl~l~p~ 243 (525)
|+++++++. |+.+.++.|. ....||++++|++.|.
T Consensus 161 G~v~~~~~~---e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 161 GELRTLTKE---AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred CCEEEEEHH---HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 999999875 8999999984 3357999999999875
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=4.7e-21 Score=191.06 Aligned_cols=165 Identities=18% Similarity=0.182 Sum_probs=135.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcC
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAG 144 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~a 144 (525)
..+.|.+++.|+|++|+++++++|+ ++++|++++|+|||+.....+..|++|+++++.. .++.+ +.+++|+|
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~--~~~ip~~vlGgGSNllv~d~g~~gvVI~l~~~~~-----~i~~~-~~~v~v~A 103 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVR--ELGVPLSILGGGANTLVADAGVRGVVLRLPQDFP-----GESTD-GGRLVLGA 103 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHH--HCCCcEEEEcCCcceeecCCCEeeEEEEecCCcc-----eEEec-CCEEEEEC
Confidence 6789999999999999999999997 8999999999999985333223589999987432 45555 67999999
Q ss_pred CccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCCCChhHHHHHh
Q 009793 145 EQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAAL 224 (525)
Q Consensus 145 Gv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~~~~dl~~~~~ 224 (525)
|+.|.+|.+++.++||.+.++.+..++||||++..|+ | ..||.+.|+|.++++|++|| ..+... .|+.+.++
T Consensus 104 G~~~~~L~~~~~~~GL~GlE~l~gIPGTvGGav~mNa-G---a~ggei~d~v~~v~vv~~~G-~~~~~~---~e~~f~YR 175 (302)
T PRK14652 104 GAPISRLPARAHAHGLVGMEFLAGIPGTLGGAVAMNA-G---TKLGEMKDVVTAVELATADG-AGFVPA---AALGYAYR 175 (302)
T ss_pred CCcHHHHHHHHHHcCCcccccccCCCcchhHHHHHcC-C---CCceEhhheEEEEEEECCCC-cEEeeh---hhcCcccc
Confidence 9999999999999999999998888899999998553 2 35888999999999999999 444443 36777777
Q ss_pred cCC-CcceEEEEeEEEEEecCC
Q 009793 225 GGL-GQFGIITRARIALEPAPK 245 (525)
Q Consensus 225 Gs~-G~lGiit~~tl~l~p~p~ 245 (525)
+|. +.-||||+++|++.|..+
T Consensus 176 ~s~~~~~~II~~a~~~L~~~~~ 197 (302)
T PRK14652 176 TCRLPPGAVITRVEVRLRPGDV 197 (302)
T ss_pred eeccCCCeEEEEEEEEEecCCH
Confidence 754 223899999999999653
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=4.5e-21 Score=191.62 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=150.4
Q ss_pred cccccccCceeecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcE
Q 009793 37 KLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGV 116 (525)
Q Consensus 37 ~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gv 116 (525)
+|+++.-+..+.++ ..+..|++.. ..+.+.+++.|+|++||++++++|+ ++++|++++|+|||+.......+|+
T Consensus 9 ~l~~~~~~~~v~~~-~~L~~~tt~~---iGG~A~~~v~p~~~edv~~~v~~a~--~~~ip~~vlGgGSNll~~d~g~~Gv 82 (307)
T PRK13906 9 ALQQLIPNEKIKVD-EPLKRYTYTK---TGGNADFYITPTKNEEVQAVVKYAY--QNEIPVTYLGNGSNIIIREGGIRGI 82 (307)
T ss_pred HHHHhcCCCeeecC-CccccceEcC---cCceeEEEEEcCCHHHHHHHHHHHH--HcCCCEEEEcCceeEeecCCCcceE
Confidence 44444222246655 4666676664 3478999999999999999999997 8999999999999987444434699
Q ss_pred EEEcCCccCcCCCCeEEEcCCcEEEEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccC-ccccc
Q 009793 117 VVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYG-PQISN 195 (525)
Q Consensus 117 vidl~~mn~i~~~~~i~id~~~~v~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG-~~~d~ 195 (525)
+|++++||+ ++++ +.+++|+||+.|.+|.+++.++||.+..+.++.++||||++.+|+ |. || .++|+
T Consensus 83 vI~l~~l~~------i~~~-~~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPGtVGGav~mNa-Ga----yGg~i~D~ 150 (307)
T PRK13906 83 VISLLSLDH------IEVS-DDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNA-GA----YGGEVKDC 150 (307)
T ss_pred EEEecCccc------eEEe-CCEEEEECCCcHHHHHHHHHHcCCccchhhcCCCccHhHHHHhhC-Cc----chhhhhhh
Confidence 999988985 4566 568999999999999999999999988888778889999998554 22 75 77999
Q ss_pred EEEEEEEecCccEEEecCCCChhHHHHHhcCC--CcceEEEEeEEEEEec
Q 009793 196 VYELDVVTGKGELMTCSALKNSELFYAALGGL--GQFGIITRARIALEPA 243 (525)
Q Consensus 196 v~~~~vV~~dG~~~~~~~~~~~dl~~~~~Gs~--G~lGiit~~tl~l~p~ 243 (525)
|.++++|++||++++.++. |+.+.++.|. ..--||++++|++.|.
T Consensus 151 l~~v~vv~~~G~~~~~~~~---e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 151 IDYALCVNEQGSLIKLTTK---ELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred eeEEEEEeCCCCEEEEEHH---HccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 9999999999999998865 7888888765 2235999999999874
No 23
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.82 E-value=5.9e-20 Score=182.11 Aligned_cols=163 Identities=20% Similarity=0.299 Sum_probs=138.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcC
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAG 144 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~a 144 (525)
+...|.+++.|+|++||++++++|+ ++++|++++|+|||+.+.+...+|++|++++|++ + .++++.+++|+|
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~--~~~~p~~vlGgGSNll~~d~~~~gvvi~l~~~~~-----~-~~~~~~~v~v~a 80 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAK--EEDQPLLILGEGSNLLILDDGRGGVIINLGKGID-----I-EDDEGEYVHVGG 80 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHH--HcCCCEEEEecceEEEEccCCcCeEEEECCCCce-----E-EEecCCEEEEEc
Confidence 5678999999999999999999997 8999999999999998777666899999999985 3 344456899999
Q ss_pred CccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccCcccc-cEEEEEEEecCccEEEecCCCChhHHHHH
Q 009793 145 EQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQIS-NVYELDVVTGKGELMTCSALKNSELFYAA 223 (525)
Q Consensus 145 Gv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d-~v~~~~vV~~dG~~~~~~~~~~~dl~~~~ 223 (525)
|+.|.+|.+++.++||....+....++||||++..|+ |. ||...+ .|.++++|++||++++.+.. |+.+.+
T Consensus 81 G~~~~~l~~~~~~~Gl~GlE~l~giPGtvGGai~mNA-Ga----yG~~i~d~l~~v~vv~~~G~~~~~~~~---~~~f~Y 152 (284)
T TIGR00179 81 GENWHKLVKYALKNGLSGLEFLAGIPGTVGGAVIMNA-GA----YGVEISEVLVYATILLATGKTEWLTNE---QLGFGY 152 (284)
T ss_pred CCcHHHHHHHHHHCCCcccccCCCCCchHHHHHHHhc-cc----chhehhheEEEEEEEeCCCCEEEEEHH---HccccC
Confidence 9999999999999999888887778889999997443 22 998876 56899999999999998865 777788
Q ss_pred hcCC--Ccc-eEEEEeEEEEEec
Q 009793 224 LGGL--GQF-GIITRARIALEPA 243 (525)
Q Consensus 224 ~Gs~--G~l-Giit~~tl~l~p~ 243 (525)
+.|. ... .||+++++++.+.
T Consensus 153 R~S~f~~~~~~iil~a~~~l~~~ 175 (284)
T TIGR00179 153 RTSIFQHKYVGLVLKAEFQLTLG 175 (284)
T ss_pred CccccCCCCcEEEEEEEEEeccc
Confidence 8764 322 7999999999543
No 24
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.79 E-value=1.6e-20 Score=183.47 Aligned_cols=219 Identities=15% Similarity=0.206 Sum_probs=148.4
Q ss_pred cCCceEEEEEEeCChhhHHHHHHHHHHccCcCCccccccccceeeecC-CccCCCcccCCCCCCCcccccccccccEEEE
Q 009793 243 APKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQ-GSLDNWRSSFFPPSDHPKIISQVKTHAIIYC 321 (525)
Q Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 321 (525)
.|+.+..+.+.|++++++.++++.+.+. +..|+++|++|......- .... ...+....++++
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~--g~~p~a~el~d~~~~~~~~~~~~---------------~~~~~~~~~~ll 63 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQS--GIIPSAIELLDSAALKLALEHWG---------------EPLPPEGGAVLL 63 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHH--CSSCCECCCCHHHHHHHHHHSEE---------------ETSSTTTSEEEE
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHc--CCCceEEeeeCHHHHHHHHhhcC---------------CCccCCcccEEE
Confidence 4778889999999999999999988775 489999999998654211 0000 012335577888
Q ss_pred EEEEeeeCCCCchhhHHHHH-HHHhhccCCCCccccccchHHHHHHhhhhhhHHHhhccCccCCc---------------
Q 009793 322 LEVAKYYDDHTQSTLHKELQ-TLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPH--------------- 385 (525)
Q Consensus 322 ~e~~~~~~~~~~~~~~~~~~-~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~~r~--------------- 385 (525)
+++. +.+.+.+++.++ .+.+.+...++... ..+.+......+|..|+
T Consensus 64 v~~~----g~~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~ 126 (248)
T PF02913_consen 64 VEFE----GSDEEAVEEQLEAEIEEICKKYGGEDV-------------VIADDEEEQERLWAIRRAIMPYLRDAAGRAGP 126 (248)
T ss_dssp EECC----CHHHCCHHHHHHHHHHHHHCTCTCCEE-------------EEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEE
T ss_pred EEEC----CCcHHHHHHHHHHHHHHHHhhcCCcee-------------EEeCCHHHHHhhhhhhhhhcccccccccccCC
Confidence 9863 333355666676 77777765443210 01112222233333322
Q ss_pred --cceeeccccccHHHHHhHHHHHhhhhcCCCCccEEEEeCCCCCCCCCccccccCCcEEEEEccccCCChhhHHHHHHH
Q 009793 386 --PWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQ 463 (525)
Q Consensus 386 --~~~d~~vP~~~l~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~~h~~i~~~~~~~~~~~~~~~~~ 463 (525)
...|++||+++++++++.+ +++.++.. + .....+|+++|++|+++.+ +..++++.+++.++
T Consensus 127 ~~~~~dv~vp~~~l~~~~~~~-~~~~~~~~-----~----------~~~~~gH~~~g~~h~~~~~-~~~~~~~~~~~~~~ 189 (248)
T PF02913_consen 127 VWDTEDVAVPPSRLPEFLREI-RALLREYG-----L----------EVCHFGHAGDGNLHLYILF-DPRDPEEPERAEAL 189 (248)
T ss_dssp EEEEEEEESCHHHHHHHHHHH-HHHHHHCT-----E----------EEEEEEEEEECEEEEEEEE-ETTSHHHHHHHHHH
T ss_pred ceeeeeecccchhhhhHHHhh-hhhhhhcc-----c----------cccceEEccCCeEEEEeec-ccchHHHHHHHHHH
Confidence 1249999999999999998 67776521 1 1123468899999999987 77777888999999
Q ss_pred HHHHHHHHHHc--------CCc--eeecCCCCCChHHHHHhhhhhHHHHHHhhhcCCCcCcCCCCcc
Q 009793 464 NKEILKFCENA--------GIK--VKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQR 520 (525)
Q Consensus 464 ~~~l~~~~~~~--------G~g--~~~yl~~~~~~~~w~~~~G~~~~~~~~iK~~~DP~gilNPGk~ 520 (525)
.+++.+.+.++ |+| +.+|+...+++. .++.|++||+.|||+|||||||+
T Consensus 190 ~~~~~~~~~~~gG~is~eHG~G~~k~~~~~~~~~~~--------~~~~~~~iK~~~DP~~ilNPGki 248 (248)
T PF02913_consen 190 WDELYELVLELGGSISAEHGIGKLKKPYLEEEYGPA--------ALRLMRAIKQAFDPNGILNPGKI 248 (248)
T ss_dssp HHHHHHHHHHTT-BBSSSSGGGHHHHHHHCHHCHHH--------HHHHHHHHHHHH-TTS-BSTTG-
T ss_pred HHHHHHHHHhcccccccccchhhhhHHHHHHhcchH--------HHHHHHHhhhccCCccCCCCCCC
Confidence 99998888765 566 556666555555 89999999999999999999996
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.78 E-value=1.3e-18 Score=172.35 Aligned_cols=163 Identities=18% Similarity=0.135 Sum_probs=137.1
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcC
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAG 144 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~a 144 (525)
..+...+++.|+|++|+++++++|+ + ++|+.+.|+|||+.....+.+|++|.+++|++ ++++ +..++|+|
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~--~-~~p~~vlG~GSNlLv~d~g~~gvVI~l~~~~~------i~i~-~~~v~v~A 99 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLK--E-GIEVKILGNGTNVLPKDEPMDFVVVSTERLDD------IFVD-NDKIICES 99 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHh--c-CCCEEEEcCCeeEEEecCCccEEEEEeCCcCc------eEEe-CCEEEEeC
Confidence 5678899999999999999999996 7 99999999999998887776899999978984 4666 57899999
Q ss_pred CccHHHHHHHHHhCCCcccccCCCCceeEeeecC-CCCCCCCccccCc-ccccEEEEEEEecCccEEEecCC-CChhHHH
Q 009793 145 EQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLS-NAGISGQTFRYGP-QISNVYELDVVTGKGELMTCSAL-KNSELFY 221 (525)
Q Consensus 145 Gv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~-~~g~g~~~~~yG~-~~d~v~~~~vV~~dG~~~~~~~~-~~~dl~~ 221 (525)
|+.|.+|..++.++||...+..++.++||||++. |+|+ ||. +.|.|.++++++ +|++.+.+.. -+.++.+
T Consensus 100 G~~l~~L~~~~~~~GL~GlE~l~gIPGTVGGAv~mNAGa------yG~ei~d~l~~V~~~d-~g~v~~~~~~e~~f~YR~ 172 (297)
T PRK14653 100 GLSLKKLCLVAAKNGLSGFENAYGIPGSVGGAVYMNAGA------YGWETAENIVEVVAYD-GKKIIRLGKNEIKFSYRN 172 (297)
T ss_pred CCcHHHHHHHHHHCCCcchhhhcCCchhHHHHHHHhCcc------CchhhheeEEEEEEEC-CCEEEEEchhhccccCcc
Confidence 9999999999999999988888888999999997 5554 998 789999999999 7888888764 1333344
Q ss_pred HHhcCCCcceEEEEeEEEEEecCC
Q 009793 222 AALGGLGQFGIITRARIALEPAPK 245 (525)
Q Consensus 222 ~~~Gs~G~lGiit~~tl~l~p~p~ 245 (525)
...++++++ ||++++|++.|..+
T Consensus 173 S~~~~~~~~-iI~~a~f~L~~~~~ 195 (297)
T PRK14653 173 SIFKEEKDL-IILRVTFKLKKGNK 195 (297)
T ss_pred ccCCCCCcE-EEEEEEEEEecCCH
Confidence 444444455 99999999998643
No 26
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.78 E-value=2e-18 Score=175.18 Aligned_cols=162 Identities=20% Similarity=0.287 Sum_probs=139.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcC-CcEEEEc
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVA 143 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~-~~~v~v~ 143 (525)
....+.+++.|+|++|+++++++|+ ++++|+.++|+|||+.-......|++|+++ ++. ++++. +.+++|+
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~--~~~~p~~vlGgGSNlLv~D~g~~GvVI~l~-~~~------i~i~~~~~~v~vg 99 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELD--AAGEPLLVLGGGSNLVIADDGFDGTVVRVA-TRG------VTVDCGGGLVRAE 99 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHH--HCCCCEEEEeCCeeEeECCCCccEEEEEeC-CCc------EEEeCCCCEEEEE
Confidence 5778999999999999999999997 899999999999998644443468999997 463 45554 6789999
Q ss_pred CCccHHHHHHHHHhCCCcccccCCCCceeEeeecC-CCCCCCCccccCcc-cccEEEEEEEecC-ccEEEecCCCChhHH
Q 009793 144 GEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLS-NAGISGQTFRYGPQ-ISNVYELDVVTGK-GELMTCSALKNSELF 220 (525)
Q Consensus 144 aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~-~~g~g~~~~~yG~~-~d~v~~~~vV~~d-G~~~~~~~~~~~dl~ 220 (525)
||+.|.+|.+++.++|+...+..++.++||||++. |+|+ ||.. .|.|.++++++.+ |++.+.+. .|++
T Consensus 100 AG~~~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGa------yG~ei~D~l~sV~vvd~~~G~~~~~~~---~el~ 170 (363)
T PRK13903 100 AGAVWDDVVARTVEAGLGGLECLSGIPGSAGATPVQNVGA------YGQEVSDTITRVRLLDRRTGEVRWVPA---ADLG 170 (363)
T ss_pred cCCCHHHHHHHHHHcCCccccccCCCCcchhhHhhcCCCh------hHHHHhhhEeEEEEEECCCCEEEEEEH---HHcc
Confidence 99999999999999999999999999999999996 5554 8865 7999999999965 99999874 4999
Q ss_pred HHHhcCC---CcceEEEEeEEEEEecC
Q 009793 221 YAALGGL---GQFGIITRARIALEPAP 244 (525)
Q Consensus 221 ~~~~Gs~---G~lGiit~~tl~l~p~p 244 (525)
+.+|+|. +..+|||+++|++.|..
T Consensus 171 f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 171 FGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred eeccccccCCCCCEEEEEEEEEEEcCC
Confidence 9999973 34789999999999874
No 27
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.74 E-value=7.6e-17 Score=157.67 Aligned_cols=137 Identities=21% Similarity=0.293 Sum_probs=122.2
Q ss_pred eEEEcC-CcEEEEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEE
Q 009793 131 GITVGS-GFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELM 209 (525)
Q Consensus 131 ~i~id~-~~~v~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~ 209 (525)
++++|. ..+++|||+|++.++.++|-+.|+..+..+...+.||||.+.+.|.-+.|++||...+.+.+.|||++||+++
T Consensus 114 ILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv 193 (543)
T KOG1262|consen 114 ILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELV 193 (543)
T ss_pred HHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEE
Confidence 688888 8999999999999999999999998777888889999999998888999999999999999999999999999
Q ss_pred EecCC-CChhHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHHc
Q 009793 210 TCSAL-KNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISM 270 (525)
Q Consensus 210 ~~~~~-~~~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (525)
++.+. +++|||.++..|+||+|..+.+++|+.|..+. +.+.|-..+...+.++.+...
T Consensus 194 ~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Y---vkltyip~~~l~e~c~k~~e~ 252 (543)
T KOG1262|consen 194 RVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKY---VKLTYIPVHGLDEYCKKITEL 252 (543)
T ss_pred EecCCcccCceEEEcccccCchheeeeeEEEEEeccce---EEEEEEecccHHHHHHHHHhh
Confidence 99886 78999999999999999999999999998875 555565555666666666653
No 28
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=5.9e-17 Score=161.35 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=139.1
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcC-CcEEEEc
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVA 143 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~-~~~v~v~ 143 (525)
..+.+.+++.|+|++|+++++++|+ ++++|+.++|+|||+...+.+.+|++|++++|+- .+..+. +.+++|+
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~--~~~ip~~vlG~GSNlL~~d~g~~GvVI~l~~~~~-----~i~~~~~~~~v~v~ 89 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAE--QRQLPLFWLGGGSNLLVRDEGFDGLVARYRGQRW-----ELHEHGDTAEVWVE 89 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHH--HCCCCEEEEecceeEEEeCCCcCeEEEEecCCCc-----EEEEeCCcEEEEEE
Confidence 5778899999999999999999997 8999999999999998877777899999987641 234443 4489999
Q ss_pred CCccHHHHHHHHHhCCCcccccCCCCceeEeeecC-CCCCCCCccccC-cccccEEEEEEEecCccEEEecCCCChhHHH
Q 009793 144 GEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLS-NAGISGQTFRYG-PQISNVYELDVVTGKGELMTCSALKNSELFY 221 (525)
Q Consensus 144 aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~-~~g~g~~~~~yG-~~~d~v~~~~vV~~dG~~~~~~~~~~~dl~~ 221 (525)
||+.|.+|.+++.++||..+++.++.++||||++. |.|. || .+.|.|.++++++.+|++.+.++. |+.+
T Consensus 90 AG~~~~~l~~~~~~~GL~GlE~l~GIPGTvGGa~~mNaGa------yg~ei~d~l~~V~~~~~~g~~~~~~~~---el~f 160 (295)
T PRK14649 90 AGAPMAGTARRLAAQGWAGLEWAEGLPGTIGGAIYGNAGC------YGGDTATVLIRAWLLLNGSECVEWSVH---DFAY 160 (295)
T ss_pred cCCcHHHHHHHHHHcCCccccccCCCCcchhHHHHhhccc------cceEhheeEEEEEEEeCCCCEEEEeHH---HcCc
Confidence 99999999999999999988898888999999764 6664 55 568999999999999999998764 8888
Q ss_pred HHhcCC--Cc--------ceEEEEeEEEEEecCC
Q 009793 222 AALGGL--GQ--------FGIITRARIALEPAPK 245 (525)
Q Consensus 222 ~~~Gs~--G~--------lGiit~~tl~l~p~p~ 245 (525)
.++.|. .. --||++++|++.|..+
T Consensus 161 ~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~~ 194 (295)
T PRK14649 161 GYRTSVLKQLRADGITWRPPLVLAARFRLHRDDP 194 (295)
T ss_pred ccceeecccccccccccCCeEEEEEEEEECCCCH
Confidence 888873 21 2399999999988643
No 29
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=1.1e-15 Score=151.05 Aligned_cols=164 Identities=17% Similarity=0.132 Sum_probs=139.3
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcC-CCcEEEEcCCccCcCCCCeEEEcCCcEEEEc
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMA-DGGVVVEMMALKNYRNGNGITVGSGFYADVA 143 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~-~~gvvidl~~mn~i~~~~~i~id~~~~v~v~ 143 (525)
..+...+++.|+|.+|+++++++|+ ++++|+.+.|+|||+.....+ .+|++|.+.+|+. ++++ +..++|+
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~--~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~------i~~~-~~~v~a~ 99 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAI--EEKIKIFILGGGSNILINDEEEIDFPIIYTGHLNK------IEIH-DNQIVAE 99 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHH--HcCCCEEEEeceeEEEEECCCccceEEEEECCcCc------EEEe-CCEEEEE
Confidence 5778899999999999999999996 889999999999998766655 5789998866874 4665 5679999
Q ss_pred CCccHHHHHHHHHhCCCcccccCCCCceeEeeecC-CCCCCCCccccCcc-cccEEEEEEEecCccEEEecCCCChhHHH
Q 009793 144 GEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLS-NAGISGQTFRYGPQ-ISNVYELDVVTGKGELMTCSALKNSELFY 221 (525)
Q Consensus 144 aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~-~~g~g~~~~~yG~~-~d~v~~~~vV~~dG~~~~~~~~~~~dl~~ 221 (525)
||+.|.+|..++.++||...+..++.++||||++. |+|+ ||.. .|.|.++++++.+|++.+.+.. |+-+
T Consensus 100 AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNAGa------yG~ei~d~l~sV~~~d~~g~~~~~~~~---e~~f 170 (302)
T PRK14650 100 CGTNFEDLCKFALQNELSGLEFIYGLPGTLGGAIWMNARC------FGNEISEILDKITFIDEKGKTICKKFK---KEEF 170 (302)
T ss_pred eCCcHHHHHHHHHHcCCchhhhhcCCCcchhHHHHhhCCc------cccchheeEEEEEEEECCCCEEEEEHH---HcCc
Confidence 99999999999999999999999999999999996 6665 8865 6888899999999999888754 7777
Q ss_pred HHhcCC--CcceEEEEeEEEEEecCCc
Q 009793 222 AALGGL--GQFGIITRARIALEPAPKR 246 (525)
Q Consensus 222 ~~~Gs~--G~lGiit~~tl~l~p~p~~ 246 (525)
.+|.|. ..-.||++++|++.|.++.
T Consensus 171 ~YR~S~f~~~~~iIl~a~f~L~~~~~~ 197 (302)
T PRK14650 171 KYKISPFQNKNTFILKATLNLKKGNKK 197 (302)
T ss_pred ccccccCCCCCEEEEEEEEEEcCCCHH
Confidence 788764 2236999999999987543
No 30
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=2.7e-15 Score=145.86 Aligned_cols=162 Identities=22% Similarity=0.301 Sum_probs=141.4
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcC-CcEEEEc
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVA 143 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~-~~~v~v~ 143 (525)
....+..++.|++.+|+.++++++. ..++|+.+.|+|||+.-.....++++|.+.+++. ++++. +..++++
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~--~~~~p~~ilG~GSNlLv~d~g~~gvvi~~~~~~~------~~~~~~~~~i~a~ 88 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAK--AEDLPVLILGGGSNLLVRDGGIGGVVIKLGKLNF------IEIEGDDGLIEAG 88 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhh--hcCCCEEEEecCceEEEecCCCceEEEEcccccc------eeeeccCCeEEEc
Confidence 5778899999999999999999996 7999999999999987666556899999998874 45554 5599999
Q ss_pred CCccHHHHHHHHHhCCCcccccCCCCceeEeeecC-CCCCCCCccccCcc-cccEEEEEEEecCccEEEecCCCChhHHH
Q 009793 144 GEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLS-NAGISGQTFRYGPQ-ISNVYELDVVTGKGELMTCSALKNSELFY 221 (525)
Q Consensus 144 aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~-~~g~g~~~~~yG~~-~d~v~~~~vV~~dG~~~~~~~~~~~dl~~ 221 (525)
+|..|.+|..++.++|+......+..++||||++. |+|+ ||.. .|.+.++++++.+|++.+.++. |+.+
T Consensus 89 aG~~~~~l~~~~~~~gl~GlE~l~gIPGsvGgav~mNaGA------yG~Ei~d~~~~v~~ld~~G~~~~l~~~---el~f 159 (291)
T COG0812 89 AGAPWHDLVRFALENGLSGLEFLAGIPGSVGGAVIMNAGA------YGVEISDVLVSVEVLDRDGEVRWLSAE---ELGF 159 (291)
T ss_pred cCCcHHHHHHHHHHcCCcchhhhcCCCcccchhhhccCcc------cccchheeEEEEEEEcCCCCEEEEEHH---HhCc
Confidence 99999999999999999999999999999999995 7766 8886 5677799999999999999865 8888
Q ss_pred HHhcCC--CcceEEEEeEEEEEec
Q 009793 222 AALGGL--GQFGIITRARIALEPA 243 (525)
Q Consensus 222 ~~~Gs~--G~lGiit~~tl~l~p~ 243 (525)
.+|.|. -...+|++++|++.|.
T Consensus 160 ~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 160 GYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred ccccCcCCCCCEEEEEEEEEeCCC
Confidence 888875 3339999999999997
No 31
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.61 E-value=6.3e-15 Score=147.92 Aligned_cols=160 Identities=21% Similarity=0.233 Sum_probs=136.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEc--CC--cEE
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVG--SG--FYA 140 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id--~~--~~v 140 (525)
..+.+..++.|+|++|+++++++|+ ++++|+.+.|+|||+.... ...|++|.+ ++++ ++++ .+ ..+
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~--~~~~p~~vlG~GSNlLv~D-~~~g~vI~~-~~~~------~~~~~~~~~~~~v 86 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADAR--AAGLPVLVLGGGSNVLFTE-DFDGTVLLN-RIKG------IEVLSEDDDAWYL 86 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHH--HcCCCEEEEeceEEEEECC-CCCEEEEEe-cCCc------eEEEecCCCeEEE
Confidence 5778899999999999999999996 8999999999999987666 568999987 4774 4552 22 389
Q ss_pred EEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecC-CCCCCCCccccCcc-cccEEEEEEEecC-ccEEEecCCCCh
Q 009793 141 DVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLS-NAGISGQTFRYGPQ-ISNVYELDVVTGK-GELMTCSALKNS 217 (525)
Q Consensus 141 ~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~-~~g~g~~~~~yG~~-~d~v~~~~vV~~d-G~~~~~~~~~~~ 217 (525)
+|+||+.|.+|.+++.++||...+..++.++||||++. |+|+ ||.. .|.+.++++++.+ |++.+.++.
T Consensus 87 ~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGa------yG~ei~d~l~~V~v~d~~~g~~~~~~~~--- 157 (334)
T PRK00046 87 HVGAGENWHDLVLWTLQQGMPGLENLALIPGTVGAAPIQNIGA------YGVELKDVCDYVEALDLATGEFVRLSAA--- 157 (334)
T ss_pred EEEcCCcHHHHHHHHHHcCchhhHHhcCCCcchhHHHHhcCCc------CcccHheeEEEEEEEECCCCcEEEEEHH---
Confidence 99999999999999999999999999999999999996 6665 8865 6888899999987 999988865
Q ss_pred hHHHHHhcCC--Cc---ceEEEEeEEEEEec
Q 009793 218 ELFYAALGGL--GQ---FGIITRARIALEPA 243 (525)
Q Consensus 218 dl~~~~~Gs~--G~---lGiit~~tl~l~p~ 243 (525)
|+.+.+|.|. .. --||++++|++.|.
T Consensus 158 e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 158 ECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred HcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 7888888774 22 35999999999996
No 32
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.55 E-value=2.4e-14 Score=143.45 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=133.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEE---cCC-cEE
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITV---GSG-FYA 140 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~i---d~~-~~v 140 (525)
..+...+++.|+|.+|+++++++|+ ++++|+.+.|+|||+.....+..|++|.+.+|+. +++ +.+ ..+
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~--~~~~p~~iLG~GSNlL~~D~g~~G~VI~l~~~~~------i~i~~~~~~~~~v 97 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQ--RARIPLSLIGGGSNVLIADEGVPGLMLSLRRFRS------LHTQTQRDGSVLV 97 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHH--HcCCCEEEEeceeEEEEeCCCccEEEEEeCCcCc------eEEeeccCCcEEE
Confidence 5778899999999999999999996 8899999999999998777666899999877875 343 223 479
Q ss_pred EEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecC-CCCCCCCccccCcc-cccEEEEEEE----------------
Q 009793 141 DVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLS-NAGISGQTFRYGPQ-ISNVYELDVV---------------- 202 (525)
Q Consensus 141 ~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~-~~g~g~~~~~yG~~-~d~v~~~~vV---------------- 202 (525)
+|+||+.|.+|.+++.++||...+..++.++||||++. |+|+ ||.. .|.|.+++++
T Consensus 98 ~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mNAGA------yG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~ 171 (354)
T PRK14648 98 HAGAGLPVAALLAFCAHHALRGLETFAGLPGSVGGAAYMNARC------YGRAIADCFHSARTLVLHPVRSRAKELPEVR 171 (354)
T ss_pred EEEeCCcHHHHHHHHHHcCCcchhhhcCCCcchhhHhhhcCCc------cceEhhheEEEEEEEeccCcccccccccccc
Confidence 99999999999999999999999999999999999996 6665 8865 6888899999
Q ss_pred ----ecCccE-------------EEecCCCChhHHHHHhcCC--Cc--------ceEEEEeEEEEEecCC
Q 009793 203 ----TGKGEL-------------MTCSALKNSELFYAALGGL--GQ--------FGIITRARIALEPAPK 245 (525)
Q Consensus 203 ----~~dG~~-------------~~~~~~~~~dl~~~~~Gs~--G~--------lGiit~~tl~l~p~p~ 245 (525)
+.+|++ .+.. ..|+.+.++.|. .. --||++++|++.|..+
T Consensus 172 ~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~~ 238 (354)
T PRK14648 172 KNAQDKRGECLGLDGGPFTCSSFQTVF---ARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGNP 238 (354)
T ss_pred cccccCCCceecccccccccccceEec---HHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCCH
Confidence 456776 2333 236777777764 21 2499999999998643
No 33
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.39 E-value=4.1e-12 Score=124.02 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=123.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCC-ccCcCCCCeEEEcCCcEEEEc
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMA-LKNYRNGNGITVGSGFYADVA 143 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~-mn~i~~~~~i~id~~~~v~v~ 143 (525)
..+...+++ |+|.+|+++++ ++|+.+.|+|||+.-......|++|.+.+ ++ .++++ + +|+
T Consensus 17 iGG~A~~~~-p~~~~~l~~~~--------~~p~~vlG~GSNlL~~D~g~~g~vI~l~~~~~------~~~~~-~---~a~ 77 (273)
T PRK14651 17 VGGPAELWT-VETHEQLAEAT--------EAPYRVLGGGSNLLVSDAGVPERVIRLGGEFA------EWDLD-G---WVG 77 (273)
T ss_pred cCceEEEEe-cCCHHHHHHHH--------CCCeEEEeceeEEEEcCCCcceEEEEECCcce------eEeEC-C---EEE
Confidence 456677788 99999999877 37899999999987766656799998866 54 34544 4 699
Q ss_pred CCccHHHHHHHHHhCCCcccccCCCCceeEeeecC-CCCCCCCccccCcc-cccEEEEEEEecCccEEEecCCCChhHHH
Q 009793 144 GEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLS-NAGISGQTFRYGPQ-ISNVYELDVVTGKGELMTCSALKNSELFY 221 (525)
Q Consensus 144 aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~-~~g~g~~~~~yG~~-~d~v~~~~vV~~dG~~~~~~~~~~~dl~~ 221 (525)
||+.|.+|.+++.++||...+..+..++||||++. |+|+ ||.. .|.+.++++++ +|++.+.+.. |+.+
T Consensus 78 AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGa------yG~ei~d~l~~V~~~~-~g~~~~~~~~---e~~f 147 (273)
T PRK14651 78 GGVPLPGLVRRAARLGLSGLEGLVGIPAQVGGAVKMNAGT------RFGEMADALHTVEIVH-DGGFHQYSPD---ELGF 147 (273)
T ss_pred CCCcHHHHHHHHHHCCCcchhhhcCCCcchhhHHHhhCCc------cccChheeEEEEEEEE-CCCEEEEEHH---Hccc
Confidence 99999999999999999999999999999999996 6665 8854 78889999997 8999998765 7888
Q ss_pred HHhcCC-CcceEEEEeEEEEEec
Q 009793 222 AALGGL-GQFGIITRARIALEPA 243 (525)
Q Consensus 222 ~~~Gs~-G~lGiit~~tl~l~p~ 243 (525)
.+|.|. -.-.||++++|++.|.
T Consensus 148 ~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 148 GYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred cccccCCCCCEEEEEEEEEECCC
Confidence 888774 2125999999999886
No 34
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.04 E-value=6.3e-10 Score=107.68 Aligned_cols=145 Identities=13% Similarity=0.093 Sum_probs=114.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcC
Q 009793 65 FKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAG 144 (525)
Q Consensus 65 ~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~a 144 (525)
..+...+.+.|++.+ + ++|+.+.|+|||+.-.....++++ -+.+++ .++++ +.+++|+|
T Consensus 15 iGG~A~~~~~~~~~~-l------------~~p~~vlG~GSNlLv~D~g~~~vv-~~~~~~------~~~~~-~~~v~~~A 73 (257)
T PRK13904 15 IGPPLEVLVLEEIDD-F------------SQDGQIIGGANNLLISPNPKNLAI-LGKNFD------YIKID-GECLEIGG 73 (257)
T ss_pred ECceEEEEEEechhh-h------------CCCeEEEeceeEEEEecCCccEEE-EccCcC------eEEEe-CCEEEEEc
Confidence 567788888888887 5 579999999999875555545555 345576 45666 56899999
Q ss_pred CccHHHHHHHHHhCCCcccccCCCCceeEeeecC-CCCCCCCccccCcc-cccEEEEEEEecCccEEEecCCCChhHHHH
Q 009793 145 EQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLS-NAGISGQTFRYGPQ-ISNVYELDVVTGKGELMTCSALKNSELFYA 222 (525)
Q Consensus 145 Gv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~-~~g~g~~~~~yG~~-~d~v~~~~vV~~dG~~~~~~~~~~~dl~~~ 222 (525)
|+.|.+|.+++.++||...+..+..++||||++. |+|+ ||.. .|.|.++++++ | +.+ ..|+.+.
T Consensus 74 G~~l~~l~~~~~~~gl~GlE~l~gIPGtVGGAv~mNaGa------~g~ei~d~l~~V~~~~--~---~~~---~~e~~f~ 139 (257)
T PRK13904 74 ATKSGKIFNYAKKNNLGGFEFLGKLPGTLGGLVKMNAGL------KEYEISNNLESICTNG--G---WIE---KEDIGFG 139 (257)
T ss_pred CCcHHHHHHHHHHCCCchhhhhcCCCccHHHHHHhcCCc------CccchheeEEEEEEEe--e---EEe---HHHCccc
Confidence 9999999999999999999999999999999996 6665 7755 68888999998 4 222 2378888
Q ss_pred HhcCCCcceEEEEeEEEEEecCC
Q 009793 223 ALGGLGQFGIITRARIALEPAPK 245 (525)
Q Consensus 223 ~~Gs~G~lGiit~~tl~l~p~p~ 245 (525)
++.|.=. .||++++|++.|..+
T Consensus 140 YR~S~~~-~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 140 YRSSGIN-GVILEARFKKTHGFD 161 (257)
T ss_pred ccCcCCC-cEEEEEEEEECCCCH
Confidence 8877422 399999999999654
No 35
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=97.40 E-value=0.00043 Score=68.23 Aligned_cols=122 Identities=10% Similarity=0.183 Sum_probs=68.8
Q ss_pred eeeccccccHHHHHhHHHHHhhhhcC--CCCccEEEEeCCCCCCCCCccccccCCcEEEEEccccCCChhhHHHHHHHHH
Q 009793 388 LNLFLPKSRISDFNKGVFRDIVLKRN--ITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNK 465 (525)
Q Consensus 388 ~d~~vP~~~l~~~~~~i~~~l~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~dg~~h~~i~~~~~~~~~~~~~~~~~~~ 465 (525)
.+++||.++.+++++++ .++.++.. ....++-+..+... +...+...+...+++.+...... +......+..+
T Consensus 128 ~E~~iP~~~~~~~l~~l-~~~~~~~~~~~~~~pie~R~~~~d--~~~Ls~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~ 202 (259)
T PF04030_consen 128 MEYAIPIENAPEALREL-RALIDKEGGFPVHFPIEVRFVKAD--DAWLSPAYGRDTCYIEIHMYRPM--GDPVPYEEFFR 202 (259)
T ss_dssp EEEEEEGGGHHHHHHHH-HHTHHHHG--GGEEEEEEEEE--B---STT-TTBTS-EEEEEEEE-S-H--H---HHHHHHH
T ss_pred EEEeeCHHHHHHHHHHH-HHHHHHcccCceeEEEEEEEECCC--hhhcCCCCCCCEEEEEEEEeCCc--cccccHHHHHH
Confidence 58999999999999998 56666533 12245555554332 22334445545566666552222 11112455555
Q ss_pred HHHHHHHHcCCceeecCCCC--CChHHHHHhhhhhHHHHHHhhhcCCCcCcCCC
Q 009793 466 EILKFCENAGIKVKQYLPYH--RNKEEWIKHFGSKWNTFAQRKAHFDPKMILSP 517 (525)
Q Consensus 466 ~l~~~~~~~G~g~~~yl~~~--~~~~~w~~~~G~~~~~~~~iK~~~DP~gilNP 517 (525)
++.+...+ .|.++|+.+. ....+.++.| +.++.+.++|+++||+|+|..
T Consensus 203 ~~e~~~~~--~ggRpHWgK~~~~~~~~l~~~Y-p~~~~F~~~r~~~DP~g~F~n 253 (259)
T PF04030_consen 203 AFEQILRK--YGGRPHWGKNHTLTAEQLRKLY-PRLDDFLAVRKKLDPQGVFLN 253 (259)
T ss_dssp HHHHHHGG--GT-EE-TTS-----HHHHHHT--TTHHHHHHHHHHH-TT-TT--
T ss_pred HHHHHHHH--cCCEECcCcCCCCCHHHHHHHC-cCHHHHHHHHHHhCCCCCCCC
Confidence 66665555 4567777653 4456678889 999999999999999999974
No 36
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=97.38 E-value=0.00013 Score=51.60 Aligned_cols=30 Identities=20% Similarity=0.560 Sum_probs=22.9
Q ss_pred HH-HHhhhhhHHHHHHhhhcCCCcCcCCCCc
Q 009793 490 EW-IKHFGSKWNTFAQRKAHFDPKMILSPGQ 519 (525)
Q Consensus 490 ~w-~~~~G~~~~~~~~iK~~~DP~gilNPGk 519 (525)
+| ..+||.++++|++||++|||+|+|.-..
T Consensus 14 ~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q 44 (47)
T PF08031_consen 14 DWQEAYYGENYDRLRAIKRKYDPDNVFRFPQ 44 (47)
T ss_dssp HHHHHHHGGGHHHHHHHHHHH-TT-TS-STT
T ss_pred HHHHHHhchhHHHHHHHHHHhCccceeCCCC
Confidence 56 4478999999999999999999997443
No 37
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=97.21 E-value=0.0024 Score=61.36 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=81.0
Q ss_pred HhhccCccCCcc---c---eeeccccccHHHHHhHHHHHhhhhcCC-----CC-ccEEEEeCCCCCCCCCccccccCCcE
Q 009793 375 LESQGLWEVPHP---W---LNLFLPKSRISDFNKGVFRDIVLKRNI-----TT-GPVLVYPMNRNKWDDRMSAVIPDEDV 442 (525)
Q Consensus 375 ~~~~~lW~~r~~---~---~d~~vP~~~l~~~~~~i~~~l~~~~~~-----~~-~~i~~~~~~~~~~~~~~~~~~~dg~~ 442 (525)
......|..|.. + .+.+||.+++.++++++ +++.+.... .. .++.+.-+.... .-.+. +...+
T Consensus 46 ~~~~c~wd~r~~~g~~F~E~EyaVP~e~~~~aL~el-r~l~~~~~~~l~~~ev~fPIevR~vaADd--awLSp--~rDSv 120 (257)
T PLN00107 46 LITACPWDPRIKHGEFFFQSAISVPLSGAAAFINDI-KALRDIEPDALCGLELNYGVLLRYVRASP--AHLGK--EEDAL 120 (257)
T ss_pred ccccCCCCccccCCcceEEEEEEecHHHHHHHHHHH-HHHHHhCcccccccccccCeEEEEecCcc--hhhCC--CCCeE
Confidence 344777876653 1 38999999999999999 678765311 11 233343322111 01111 23456
Q ss_pred EEEEccccCC-ChhhHHHHHHHHHHHHHH-HHHcCCceeecCCC--CCChHHHHHhhhhhHHHHHHhhhcCCCcCcCCC
Q 009793 443 FYTVGFLHSS-GFDEWEAFDDQNKEILKF-CENAGIKVKQYLPY--HRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSP 517 (525)
Q Consensus 443 h~~i~~~~~~-~~~~~~~~~~~~~~l~~~-~~~~G~g~~~yl~~--~~~~~~w~~~~G~~~~~~~~iK~~~DP~gilNP 517 (525)
++.+...... ++.......+...++.++ ..+ .|.+|++.+ ....++..+.| +.++.|.++|+++||+|+|..
T Consensus 121 ~I~~~~yr~~~~~~~pr~~~~~f~eiEqial~k--ygGRPHWGK~h~l~~~~l~~lY-Pr~~dFlavR~~lDP~G~F~N 196 (257)
T PLN00107 121 DFDLTYYRSKDDPAAPRLHEDAMEEIEQMAILK--YGALPHWGKNRNAAFDGAIAKY-KKAGEFLKVKERLDPEGLFSS 196 (257)
T ss_pred EEEEEEecccCCccccccHHHHHHHHHHHHHHh--cCCcCCchhccCCCHHHHHHHC-cCHHHHHHHHHHhCCCCccCC
Confidence 6666553433 222223445566677766 344 556666654 34556666667 789999999999999999854
No 38
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.83 E-value=0.00056 Score=62.92 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCc---CCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCC
Q 009793 69 PVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAM---ADGGVVVEMMALKNYRNGNGITVGSGFYADVAGE 145 (525)
Q Consensus 69 p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~---~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aG 145 (525)
+..+.+|+|.+|+.++++ . ..+.. +.+|||++.-.-. .....+||++++..+ ..++.+ +..++++|+
T Consensus 2 ~~~~~~P~sl~ea~~ll~-~---~~~a~--~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL---~~I~~~-~~~l~IGA~ 71 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA-K---GPDAR--IVAGGTDLGVQMREGILSPDVLIDLSRIPEL---NGISED-DGGLRIGAA 71 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH-H---GTTEE--EESS-TTHHHHHHTTS---SEEEEGTTSGGG---G-EEEE-TSEEEEETT
T ss_pred CeEEEccCCHHHHHHHHh-c---CCCCE--EEeCCCccchhcccCccccceEEEeEEeccc---ccEEEe-ccEEEECCC
Confidence 446889999999999999 3 34444 4599998642111 125699999987543 356666 789999999
Q ss_pred ccHHHHHHHHHhCCCc---------ccccCCCCceeEeeecCCCCCCCCccccCcccccE-------EEEEEEecCccE
Q 009793 146 QLWIDVLNATLEHGLA---------PASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNV-------YELDVVTGKGEL 208 (525)
Q Consensus 146 v~~~~l~~~l~~~gl~---------p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v-------~~~~vV~~dG~~ 208 (525)
+++.++.+.-.-...+ -.++.-...+|+||+++++.. ..|.+ ..+++..++|+.
T Consensus 72 vtl~~l~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~~---------~sD~~~~Llal~A~v~i~~~~g~r 141 (171)
T PF00941_consen 72 VTLSELEESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNASP---------ASDLAPALLALDARVEIASPDGTR 141 (171)
T ss_dssp SBHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTBT---------T-SHHHHHHHTT-EEEEEETTEEE
T ss_pred ccHHHHhhcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccCcc---------cccHHHHHHHhCcEEEEEcCCeeE
Confidence 9999998872111111 111112246899999986653 22322 266677777743
No 39
>PRK09799 putative oxidoreductase; Provisional
Probab=96.74 E-value=0.0027 Score=62.40 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=86.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCC-CcCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCCccHH
Q 009793 71 AVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQ-AMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWI 149 (525)
Q Consensus 71 ~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~-~~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aGv~~~ 149 (525)
-+..|+|.+|+.++++.. ..+. .+.+|||.+.-. ......++||++++ .+ ..++.+ +..++++|++++.
T Consensus 4 ~y~~P~sl~Ea~~ll~~~---~~~a--~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL---~~I~~~-~~~l~IGA~vT~~ 73 (258)
T PRK09799 4 QFFRPDSVEQALELKRRY---QDEA--VWFAGGSKLNATPTRTDKKIAISLQDL-EL---DWIEWD-NGALRIGAMSRLQ 73 (258)
T ss_pred cEeCCCCHHHHHHHHHhC---CCCC--EEEecCCChHhhhCCCCCCEEEEcCCC-CC---CeEEec-CCEEEEccCCcHH
Confidence 467999999999987632 2233 446999998422 22235789999986 43 345555 7889999999999
Q ss_pred HHHHHHHhC-CC-----cccccCCCCceeEeeecCCCCCCCCccccCccccc-----EEEEEEEecCccEEEecCCCChh
Q 009793 150 DVLNATLEH-GL-----APASWTDYLYLTVGGTLSNAGISGQTFRYGPQISN-----VYELDVVTGKGELMTCSALKNSE 218 (525)
Q Consensus 150 ~l~~~l~~~-gl-----~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~-----v~~~~vV~~dG~~~~~~~~~~~d 218 (525)
++.+...-. .| ..-++.=.+.+|+||+++++.. ..|. .++.+|++.+++.+.
T Consensus 74 ~l~~~~~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vp-------- 136 (258)
T PRK09799 74 PLRDARFIPAALREALGFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLS-------- 136 (258)
T ss_pred HHHhCcccHHHHHHHHHHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEe--------
Confidence 997753211 11 1122223356899999997642 1333 235566666664332
Q ss_pred HHHHHhcCCCcceEEEEeEEE
Q 009793 219 LFYAALGGLGQFGIITRARIA 239 (525)
Q Consensus 219 l~~~~~Gs~G~lGiit~~tl~ 239 (525)
+-..+.|..+ -|||++.+.
T Consensus 137 l~~f~~g~~~--Eil~~I~iP 155 (258)
T PRK09799 137 IEDYLACPCD--RLLTEIIIP 155 (258)
T ss_pred HHHhcCCCCC--cEEEEEEcC
Confidence 2233444333 489988775
No 40
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.54 E-value=0.0042 Score=61.04 Aligned_cols=100 Identities=16% Similarity=0.074 Sum_probs=65.4
Q ss_pred EEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCC-CCcCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCCccHHH
Q 009793 72 VLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRG-QAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWID 150 (525)
Q Consensus 72 vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g-~~~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aGv~~~~ 150 (525)
+.+|+|.+|..++++.. ..+-. +.+|||++.- .......++||++++ .+ ..++.+ +..++++|++++.+
T Consensus 4 y~~P~sl~Ea~~ll~~~---~~~a~--~lAGGTdL~~~~~~~~~~~lIdl~~i-eL---~~I~~~-~~~l~IGA~~t~~~ 73 (257)
T TIGR03312 4 FFRPESTIQALELKKRH---TGVAV--WFAGGSKLNATPTRTDKKVAISLDKL-AL---DKIELQ-GGALHIGAMCHLQS 73 (257)
T ss_pred eECCCCHHHHHHHHHhC---CCCCE--EEecCcchhhhhcccCCCEEEEcCCC-CC---CcEEec-CCEEEEEeCCcHHH
Confidence 57899999999987632 12233 4599999852 222234689999886 44 345665 67899999999999
Q ss_pred HHHHH------HhCCCcccccCCCCceeEeeecCCCC
Q 009793 151 VLNAT------LEHGLAPASWTDYLYLTVGGTLSNAG 181 (525)
Q Consensus 151 l~~~l------~~~gl~p~~~~~~~~~tvGG~~~~~g 181 (525)
+.+.. .+.=..--++.-.+.+|+||+++++.
T Consensus 74 l~~~~~~~~~L~~aa~~va~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 74 LIDNELTPAALKEALGFVYSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred HHhCcchHHHHHHHHHHhCCHHHhccccHHHHhhcCC
Confidence 87531 11100111222335689999999765
No 41
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.04 E-value=0.016 Score=61.96 Aligned_cols=103 Identities=18% Similarity=0.092 Sum_probs=70.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCC---cCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCC
Q 009793 69 PVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQA---MADGGVVVEMMALKNYRNGNGITVGSGFYADVAGE 145 (525)
Q Consensus 69 p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~---~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aG 145 (525)
..-+.+|+|.+|+.++++.- .+. .+.+|||++.-.- ......+||++++..+ ..++.+ +..++++|+
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~~----~~a--~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL---~~I~~~-~~~l~IGA~ 261 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAAH----PDA--RIVAGSTDVGLWVTKQMRDLPDVIYVGQVAEL---KRIEET-DDGIEIGAA 261 (467)
T ss_pred CceEECCCCHHHHHHHHhhC----CCC--EEEecCcchHHHHhcCCCCCCeEEECCCChhh---ccEEEc-CCEEEEecC
Confidence 45689999999999998632 233 4468999974221 1235799999987643 345665 678999999
Q ss_pred ccHHHHHHHHHhC--CC-----cccccCCCCceeEeeecCCCC
Q 009793 146 QLWIDVLNATLEH--GL-----APASWTDYLYLTVGGTLSNAG 181 (525)
Q Consensus 146 v~~~~l~~~l~~~--gl-----~p~~~~~~~~~tvGG~~~~~g 181 (525)
+++.++.+.+.++ .+ ...++.-.+.+||||+++++.
T Consensus 262 vT~~el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 262 VTLTDAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGS 304 (467)
T ss_pred CcHHHHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCC
Confidence 9999998766543 11 112222345789999999765
No 42
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.76 E-value=0.018 Score=57.74 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=66.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCC---CcCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCCcc
Q 009793 71 AVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQ---AMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQL 147 (525)
Q Consensus 71 ~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~---~~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aGv~ 147 (525)
-++.|+|.+|..++++.- . +. .+.+|||++.-. .......+||++++..+ +.++...+..++++|+++
T Consensus 6 ~~~~P~sl~Ea~~ll~~~---~-~a--~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL---~~I~~~~~~~l~IGA~vt 76 (291)
T PRK09971 6 EYHEAATLEEAIELLADN---P-QA--KLIAGGTDVLIQLHHHNDRYRHLVSIHNIAEL---RGITLAEDGSIRIGAATT 76 (291)
T ss_pred ceeCCCCHHHHHHHHHhC---C-CC--EEEeccchHHHHHhCCCCCCCeEEEcCCChhh---hCeEecCCCEEEEEeCCc
Confidence 588999999999988631 1 23 456999997421 11135899999987643 245543256799999999
Q ss_pred HHHHHHH--HHhC-C-C-----cccccCCCCceeEeeecCCCC
Q 009793 148 WIDVLNA--TLEH-G-L-----APASWTDYLYLTVGGTLSNAG 181 (525)
Q Consensus 148 ~~~l~~~--l~~~-g-l-----~p~~~~~~~~~tvGG~~~~~g 181 (525)
+.++.+. +.++ . + .--++.-.+.+|+||+++++.
T Consensus 77 ~~~l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 77 FTQIIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred HHHHhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCC
Confidence 9999762 2211 1 1 011222234689999999764
No 43
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=95.11 E-value=0.02 Score=57.83 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=65.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCc---CCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCCc
Q 009793 70 VAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAM---ADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQ 146 (525)
Q Consensus 70 ~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~---~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aGv 146 (525)
-.+.+|+|.+|..++++-- . +- .+.+|||++.-.-. .....+||++++..+ +.++.+ +..++++|+|
T Consensus 5 f~~~~P~sl~eA~~ll~~~---~-~a--~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL---~~I~~~-~~~l~IGA~v 74 (321)
T TIGR03195 5 FRTLRPASLADAVAALAAH---P-AA--RPLAGGTDLLPNLRRGLGQPETLVDLTGIDEI---AQLSTL-ADGLRIGAGV 74 (321)
T ss_pred ceEECCCCHHHHHHHHhhC---C-CC--EEEEccchHHHHHhcccCCCCeEEECCCChhh---ccEEec-CCEEEEeccC
Confidence 3588999999999987632 1 22 35699998632211 124799999987543 355665 6789999999
Q ss_pred cHHHHHHHHH--hC-C-C-----cccccCCCCceeEeeecCCC
Q 009793 147 LWIDVLNATL--EH-G-L-----APASWTDYLYLTVGGTLSNA 180 (525)
Q Consensus 147 ~~~~l~~~l~--~~-g-l-----~p~~~~~~~~~tvGG~~~~~ 180 (525)
++.++.+.-. ++ . | ..-++.-...+||||++++.
T Consensus 75 T~~~l~~~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 75 TLAALAEDALVRTRWPALAQAARAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred cHHHHhhChhhHhHhHHHHHHHHHhCCHHHhCceecHHhhhcc
Confidence 9999865311 11 1 1 01223334578999999964
No 44
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=94.80 E-value=0.02 Score=56.51 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCC--C--cCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCCccHHH
Q 009793 75 PSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQ--A--MADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWID 150 (525)
Q Consensus 75 P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~--~--~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aGv~~~~ 150 (525)
|+|.+|+.++++.. .+. .+.+|||++.-. . ......+||++++..+ +.++.+ +..++++|++++.+
T Consensus 1 P~sl~ea~~ll~~~----~~a--~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL---~~I~~~-~~~l~IGA~vt~~~ 70 (264)
T TIGR03199 1 PAALDEAWSLLEKA----PDS--TFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDEL---KGISTS-DTHVSIGALTTLNE 70 (264)
T ss_pred CCCHHHHHHHHHhC----CCC--EEEEccChHHHHHhcCcCCCCCeEEEcCCChhh---CcEEec-CCEEEEecCCcHHH
Confidence 78899999888742 123 346899987422 1 1225789999987643 345555 78899999999999
Q ss_pred HHHH--HHhC-C-C-----cccccCCCCceeEeeecCCC
Q 009793 151 VLNA--TLEH-G-L-----APASWTDYLYLTVGGTLSNA 180 (525)
Q Consensus 151 l~~~--l~~~-g-l-----~p~~~~~~~~~tvGG~~~~~ 180 (525)
+.+. +.++ . + .--++.-.+.+|+||+++++
T Consensus 71 l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 71 CRKNPLIKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred HhhChHhHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 9642 1111 0 1 01122223568999999865
No 45
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=92.67 E-value=0.44 Score=48.13 Aligned_cols=127 Identities=15% Similarity=0.077 Sum_probs=78.6
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcC---CCcEEEEcCCccCcCCCCeEEEcCCcEEEE
Q 009793 66 KENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMA---DGGVVVEMMALKNYRNGNGITVGSGFYADV 142 (525)
Q Consensus 66 ~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~---~~gvvidl~~mn~i~~~~~i~id~~~~v~v 142 (525)
..--..++.|.+.+|.+.++.. .-+..|+ .|+|.+.=.-.- +-..+|-..++..+ ..|++. .+.+++
T Consensus 200 ~~~~~r~~~P~~l~D~a~l~aa----~P~Ativ--AGsTDvgLwVtk~mr~l~~vi~v~~l~eL---~~i~~~-~~~l~i 269 (493)
T COG4630 200 GSGDDRFIVPATLADFADLLAA----HPGATIV--AGSTDVGLWVTKQMRDLNPVIFVGHLAEL---RRIEVS-TGGLEI 269 (493)
T ss_pred cCCCceeEeeccHHHHHHHHhh----CCCCEEE--ecCcchhhHHHHHHhhcCCeEEecchhhh---heeeec-CCcEEE
Confidence 3345568999999999998752 5566665 677776422111 12345555554422 244555 689999
Q ss_pred cCCccHHHHHHHHHhCC--C---ccc--ccCCCCceeEeeecCCCCCCCCccccCcccccE--EEEEEEecCccE
Q 009793 143 AGEQLWIDVLNATLEHG--L---APA--SWTDYLYLTVGGTLSNAGISGQTFRYGPQISNV--YELDVVTGKGEL 208 (525)
Q Consensus 143 ~aGv~~~~l~~~l~~~g--l---~p~--~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v--~~~~vV~~dG~~ 208 (525)
+||+++.|.+.+|..+= + ++- .-.-.+.+|+||+|+|++. .|.+---+ ++..+++-.|+-
T Consensus 270 GAgvt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~ 338 (493)
T COG4630 270 GAGVTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDG 338 (493)
T ss_pred ccCccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCC
Confidence 99999999999998542 1 111 1112346799999998764 44333323 477777755543
No 46
>PLN00192 aldehyde oxidase
Probab=92.53 E-value=0.32 Score=58.69 Aligned_cols=107 Identities=14% Similarity=0.036 Sum_probs=70.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCC-CcCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCCcc
Q 009793 69 PVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQ-AMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQL 147 (525)
Q Consensus 69 p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~-~~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aGv~ 147 (525)
..-..+|.|.+|+.++++.--....+.++ ..|||++.-. ......++||++++..+ +.++.+ +..++++|+++
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~l--vAGgTdl~~~k~~~~p~~lIdi~~I~EL---~~I~~~-~~~l~IGA~vT 306 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKL--VVGNTGTGYYKDEELYDKYIDIRHIPEL---SMIRRD-EKGIEIGAVVT 306 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEE--EEeCCcceeeeccCCCCeEEEcCCChhh---hcEEec-CCEEEEeecCc
Confidence 45689999999999987632000013444 4888887422 22224799999986643 345555 67899999999
Q ss_pred HHHHHHHHHhCC----Ccc---------cccCCCCceeEeeecCCCC
Q 009793 148 WIDVLNATLEHG----LAP---------ASWTDYLYLTVGGTLSNAG 181 (525)
Q Consensus 148 ~~~l~~~l~~~g----l~p---------~~~~~~~~~tvGG~~~~~g 181 (525)
+.++.+.+.++- .+| -++.-.+.+||||+|+|+.
T Consensus 307 l~el~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 307 ISKAIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 999988766542 111 1222234689999999774
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=92.43 E-value=0.26 Score=59.42 Aligned_cols=103 Identities=9% Similarity=-0.021 Sum_probs=69.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCC---cCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCCc
Q 009793 70 VAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQA---MADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQ 146 (525)
Q Consensus 70 ~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~---~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aGv 146 (525)
.-..+|.|.+|+.++++.- -+.+ +.+|||++.-.- ......+||+++...+ +.++.+ +..++++|++
T Consensus 237 ~~~~~P~tl~ea~~ll~~~----~~a~--lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL---~~i~~~-~~~l~IGA~v 306 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY----PQAP--VVMGNTSVGPEVKFKGVFHPVIISPDRIEEL---SVVNHT-GDGLTLGAGL 306 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC----CCCE--EEecCcchHHHhhhccCCCCeEEECCCChhh---hcEEEc-CCEEEEeccc
Confidence 4689999999999987632 2333 458999984221 1224589999987654 345555 6789999999
Q ss_pred cHHHHHHHHHhC---------CCc---------ccccCCCCceeEeeecCCCCC
Q 009793 147 LWIDVLNATLEH---------GLA---------PASWTDYLYLTVGGTLSNAGI 182 (525)
Q Consensus 147 ~~~~l~~~l~~~---------gl~---------p~~~~~~~~~tvGG~~~~~g~ 182 (525)
++.++.+.|.+. ..+ .-++.-.+.+||||+++|+..
T Consensus 307 T~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~asP 360 (1330)
T TIGR02969 307 SLAQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRHL 360 (1330)
T ss_pred cHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCCC
Confidence 999999875532 111 112222356899999998753
No 48
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=92.02 E-value=0.37 Score=47.74 Aligned_cols=105 Identities=17% Similarity=0.126 Sum_probs=68.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCC---cCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCC
Q 009793 69 PVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQA---MADGGVVVEMMALKNYRNGNGITVGSGFYADVAGE 145 (525)
Q Consensus 69 p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~---~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aG 145 (525)
+-.+.+|.|.+|...+++.. . + -.+.+|||++.-.- .....-+||++++... ..+...+ ++.++++|-
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~---~-~--a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~--~~~~~~~-g~~l~IGA~ 73 (284)
T COG1319 3 NFEYYRPASVEEALNLLARA---P-D--AKYLAGGTDLLPLMKLGIERPDHLVDINGLDEL--LGIVTTE-GGSLRIGAL 73 (284)
T ss_pred ceEEECCCCHHHHHHHHHhC---C-C--cEEeeCcchHHHHhhcccCCcceEEEecCChhh--hceEeec-CCEEEEeec
Confidence 55689999999999988743 2 3 34458999986322 2236789999887420 0123333 777999999
Q ss_pred ccHHHHHHHHHhCCCc---------ccccCCCCceeEeeecCCCCC
Q 009793 146 QLWIDVLNATLEHGLA---------PASWTDYLYLTVGGTLSNAGI 182 (525)
Q Consensus 146 v~~~~l~~~l~~~gl~---------p~~~~~~~~~tvGG~~~~~g~ 182 (525)
+++.+|.+.-.-+..+ .-++.-.+.+|+||+++++..
T Consensus 74 vt~~ei~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p 119 (284)
T COG1319 74 VTLTEIARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNADP 119 (284)
T ss_pred ccHHHHHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCCC
Confidence 9999986544322221 223333457899999887654
No 49
>PLN02906 xanthine dehydrogenase
Probab=91.97 E-value=0.3 Score=58.89 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=69.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCC---cCCCcEEEEcCCccCcCCCCeEEEcCCcEEEEcCCc
Q 009793 70 VAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQA---MADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQ 146 (525)
Q Consensus 70 ~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~---~~~~gvvidl~~mn~i~~~~~i~id~~~~v~v~aGv 146 (525)
.-.++|+|.+|+.++++.- .+.+ +.+|||++.-.- .....++||++++..+ +.++.+ +..++++|++
T Consensus 229 ~~~~~P~tl~ea~~ll~~~----~~a~--ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL---~~I~~~-~~~l~IGA~v 298 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY----PDAK--LVVGNTEVGIEMRFKNAQYPVLISPTHVPEL---NAIKVK-DDGLEIGAAV 298 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC----CCCE--EEEcCchhHHHhhhccCCCCeEEECCCChhh---hcEEec-CCEEEEecCC
Confidence 4588999999999987632 2333 458999984221 1235799999987643 345555 6789999999
Q ss_pred cHHHHHHHHHhCC---------Cc---------ccccCCCCceeEeeecCCCC
Q 009793 147 LWIDVLNATLEHG---------LA---------PASWTDYLYLTVGGTLSNAG 181 (525)
Q Consensus 147 ~~~~l~~~l~~~g---------l~---------p~~~~~~~~~tvGG~~~~~g 181 (525)
++.++.+.|.+.= .+ .-++.-.+.+||||+|+|+.
T Consensus 299 T~~el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 299 RLSELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred cHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 9999998755430 01 11222345789999999765
No 50
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=31.87 E-value=88 Score=32.78 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=39.6
Q ss_pred EEEEEccccCCChhhHHHHHHHHHHHHHHH-HH---------cCCc-eeecCCCCCChHHHHHhhhhhHHHHHHhhhcCC
Q 009793 442 VFYTVGFLHSSGFDEWEAFDDQNKEILKFC-EN---------AGIK-VKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFD 510 (525)
Q Consensus 442 ~h~~i~~~~~~~~~~~~~~~~~~~~l~~~~-~~---------~G~g-~~~yl~~~~~~~~w~~~~G~~~~~~~~iK~~~D 510 (525)
+|+.++. ...+.+.+..+.+...+++... .+ .|.| ..+|..... +.+ .-...+.+|+.|+
T Consensus 194 lh~HiGS-q~~d~~~~~~a~~~~~~~~~~~~~~~g~~l~~inlGGG~gi~Y~~~~~-~~~-------~~~~~~~l~~~~~ 264 (394)
T COG0019 194 LHFHIGS-QITDLDPFEEALAKVEELFGRLAEELGIQLEWLNLGGGLGITYEDEYD-PPD-------LAAYAKALKEAFG 264 (394)
T ss_pred EEEeecC-CCCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCCcCcCCCCCCC-CcC-------HHHHHHHHHHHHh
Confidence 5666654 3333443444444444444433 12 1666 677765222 221 2235566666666
Q ss_pred -----CcCcCCCCcccccc
Q 009793 511 -----PKMILSPGQRIFNN 524 (525)
Q Consensus 511 -----P~gilNPGk~~~~~ 524 (525)
|+=++-||+.|..+
T Consensus 265 ~~~~~~~l~~EPGR~iv~~ 283 (394)
T COG0019 265 EYAEDVELILEPGRAIVAN 283 (394)
T ss_pred hccCCCeEEEccchhhhhc
Confidence 89999999988543
No 51
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=27.70 E-value=4.9e+02 Score=28.76 Aligned_cols=133 Identities=17% Similarity=0.253 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCC--ccCcCCCCeEEEcC--CcEEEEcCC----ccHH
Q 009793 78 TEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMA--LKNYRNGNGITVGS--GFYADVAGE----QLWI 149 (525)
Q Consensus 78 ~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~--mn~i~~~~~i~id~--~~~v~v~aG----v~~~ 149 (525)
.+||.+-++.|. +.+-++.-..+-.++.-.-+| ..||||-|- |=|- ..+-..-|. ..+..|=|- ..++
T Consensus 312 ~~eI~a~i~~~~--~~~P~laMVnSdkGITNLHvP-sDVIIDASMPAmIR~-~GkmW~~dG~~~Dt~avIPD~sYA~vYq 387 (741)
T TIGR00178 312 QEEIEADLQAVY--AQRPELAMVNSDKGITNLHVP-SDVIVDASMPAMIRA-SGKMWGPDGKLKDTKAVIPDRCYAGVYQ 387 (741)
T ss_pred HHHHHHHHHHHH--hhCCCEEEeccCCCccccCCC-cCeEEecCcHHHHhc-cCCccCCCCCcccceeecCCccchHHHH
Confidence 477999999998 555555544544444333444 789998663 3210 000011110 112222222 2356
Q ss_pred HHHHHHHhCCCcccccCCCCceeEeeecCCCCC-CCCccccCcccccEE-----EEEEEecCccEEEecCCCChhHHHH
Q 009793 150 DVLNATLEHGLAPASWTDYLYLTVGGTLSNAGI-SGQTFRYGPQISNVY-----ELDVVTGKGELMTCSALKNSELFYA 222 (525)
Q Consensus 150 ~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~-g~~~~~yG~~~d~v~-----~~~vV~~dG~~~~~~~~~~~dl~~~ 222 (525)
++.++++++|-+-+ |-=|.+.|.|. ...+-.||+....+. .++||+.+|+++..-.-+.-|.|++
T Consensus 388 ~~I~~ck~nGafDp--------~TmGsV~NVGLMAqKAEEYGSHdkTFei~~~G~v~Vvd~~G~vl~eh~Ve~GDIwRm 458 (741)
T TIGR00178 388 VVIEDCKQNGAFDP--------TTMGTVPNVGLMAQKAEEYGSHDKTFQIPADGVVRVVDSSGEVLLEQSVEAGDIWRM 458 (741)
T ss_pred HHHHHHHhcCCCCc--------ccccCCcchhHhHHHHHHhcCCCcceecCCCceEEEEeCCCCEEEEeeccCCcchhh
Confidence 77888899996521 22235555543 334456887644443 3889999999876544332344443
No 52
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=26.15 E-value=34 Score=33.63 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=13.8
Q ss_pred HHHHHhhhcCCCcCcCCCCc
Q 009793 500 NTFAQRKAHFDPKMILSPGQ 519 (525)
Q Consensus 500 ~~~~~iK~~~DP~gilNPGk 519 (525)
+.+++-=+++||.|-||||.
T Consensus 263 p~L~~fY~~lDPtNsfNPGI 282 (291)
T PF09330_consen 263 PALKAFYRKLDPTNSFNPGI 282 (291)
T ss_dssp HHHHHHHHHH-TT--BSTTT
T ss_pred HHHHHHHHhcCCCcCCCCCc
Confidence 55667778899999999995
No 53
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=24.32 E-value=1e+02 Score=33.32 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=27.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEE
Q 009793 66 KENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAA 99 (525)
Q Consensus 66 ~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~ 99 (525)
.+.|..+.+|-|.++|..+++.|+ ..-..||+.
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAk-a~P~~pIil 181 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAK-ANPTFPIIL 181 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHHh-cCCCCceEE
Confidence 467899999999999999999997 233477776
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=23.57 E-value=1.9e+02 Score=20.76 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=30.9
Q ss_pred hHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHH
Q 009793 218 ELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYL 267 (525)
Q Consensus 218 dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 267 (525)
+|...+. .+|.|..+.+...+.........+.|.+.+++..+++.+
T Consensus 14 ~l~~~f~----~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 14 ELRDFFS----QFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEEL 59 (70)
T ss_dssp HHHHHHH----TTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhhhcccccccccccccccceEEEEEcCHHHHHHHHHHc
Confidence 5555553 366676666665544555677889999988888776654
No 55
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.64 E-value=88 Score=31.58 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=27.7
Q ss_pred ccEEEECC------CHHHHHHHHHHHHcCC----CCcEEEEecCCCCC
Q 009793 69 PVAVLYPS------STEDIVALVKAAYNSS----VPFKIAAKGRGHSV 106 (525)
Q Consensus 69 p~~vv~P~------~~~ev~~~v~~a~~~~----~~~~v~~~g~G~~~ 106 (525)
...+++|. .+++|...++.+++.. .++=|+.||||+--
T Consensus 42 ~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e 89 (319)
T PF02601_consen 42 VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE 89 (319)
T ss_pred cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChH
Confidence 34566665 4689999999998432 46778889998754
No 56
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=22.34 E-value=1.1e+02 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCcEEEEe
Q 009793 70 VAVLYPSSTEDIVALVKAAYNSSVPFKIAAK 100 (525)
Q Consensus 70 ~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~ 100 (525)
..|+.|.+.+|+..+++.|- +.+-|+..|
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~--~~~~P~~ir 153 (156)
T cd07033 125 MTVLRPADANETAAALEAAL--EYDGPVYIR 153 (156)
T ss_pred CEEEecCCHHHHHHHHHHHH--hCCCCEEEE
Confidence 45899999999999999997 444587776
No 57
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=22.28 E-value=1.4e+02 Score=27.30 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=25.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCcEEEEecC
Q 009793 70 VAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGR 102 (525)
Q Consensus 70 ~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~ 102 (525)
..|+.|.+.+|+..++++|.+++.+-|+.+|-.
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 459999999999999999983235678887643
No 58
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=21.69 E-value=1.7e+02 Score=24.44 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=31.6
Q ss_pred CcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHH
Q 009793 228 GQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLI 268 (525)
Q Consensus 228 G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 268 (525)
|.+|-|.++++-..+..+- +.++.|.+..++..+++++.
T Consensus 40 Gkyg~IrQIRiG~~k~TrG--TAFVVYedi~dAk~A~dhls 78 (124)
T KOG0114|consen 40 GKYGTIRQIRIGNTKETRG--TAFVVYEDIFDAKKACDHLS 78 (124)
T ss_pred hcccceEEEEecCccCcCc--eEEEEehHhhhHHHHHHHhc
Confidence 7788899988888887654 66778999999988887764
No 59
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=21.53 E-value=1.3e+02 Score=25.39 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHhccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEE-EEecCCC
Q 009793 56 SASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKI-AAKGRGH 104 (525)
Q Consensus 56 ~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v-~~~g~G~ 104 (525)
.|...|.. .+.+..|+++.|++|+..+.+.|. +.+++. .++-+|.
T Consensus 37 ~~~~~W~~--~G~~Kvvlkv~~~~el~~l~~~a~--~~~l~~~~v~DAG~ 82 (113)
T PRK04322 37 EWLEEWLN--EGQKKVVLKVNSEEELLELKEKAE--RLGLPTALIRDAGL 82 (113)
T ss_pred HHHHHHHH--CCCcEEEEeCCCHHHHHHHHHHHH--HcCCCEEEEEeCCC
Confidence 34455643 678999999999999999999996 777663 3454554
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=20.64 E-value=3e+02 Score=20.08 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=31.9
Q ss_pred hHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHH
Q 009793 218 ELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEY 266 (525)
Q Consensus 218 dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~ 266 (525)
||...+. .+|.|.++.+...+....+..+.+.|.+.+++.++.+.
T Consensus 14 ~l~~~f~----~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~ 58 (70)
T PF14259_consen 14 DLRNFFS----RFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALEL 58 (70)
T ss_dssp HHHHHCT----TSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHH----hcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHH
Confidence 5555443 24568888888776655677888999999988777654
Done!