Query 009796
Match_columns 525
No_of_seqs 393 out of 2803
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 17:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 3.5E-19 7.5E-24 163.2 -1.3 274 10-347 98-393 (419)
2 PLN00113 leucine-rich repeat r 99.7 1.4E-16 2.9E-21 181.9 14.5 262 134-405 93-371 (968)
3 PLN00113 leucine-rich repeat r 99.7 1.9E-16 4.1E-21 180.7 13.1 59 160-219 139-199 (968)
4 KOG4341 F-box protein containi 99.6 7.1E-18 1.5E-22 161.5 -4.4 32 12-43 74-105 (483)
5 PLN03210 Resistant to P. syrin 99.5 8.6E-14 1.9E-18 159.8 12.6 272 135-431 590-902 (1153)
6 KOG4194 Membrane glycoprotein 99.5 2.3E-15 5E-20 149.7 -0.2 242 161-432 173-426 (873)
7 KOG4194 Membrane glycoprotein 99.5 9E-15 2E-19 145.5 0.4 283 134-434 102-404 (873)
8 PLN03210 Resistant to P. syrin 99.4 9.7E-13 2.1E-17 151.2 13.6 256 134-401 611-904 (1153)
9 KOG0444 Cytoskeletal regulator 99.3 4E-14 8.7E-19 141.9 -8.7 299 135-462 33-347 (1255)
10 KOG0444 Cytoskeletal regulator 99.2 5.9E-13 1.3E-17 133.7 -4.4 261 147-432 89-372 (1255)
11 cd00116 LRR_RI Leucine-rich re 99.1 3.7E-11 8E-16 119.4 4.0 66 153-219 43-119 (319)
12 PRK15387 E3 ubiquitin-protein 99.1 4.6E-10 1E-14 120.9 11.0 255 134-434 201-457 (788)
13 KOG4341 F-box protein containi 99.1 5.8E-12 1.3E-16 121.4 -3.3 173 161-333 138-333 (483)
14 KOG2120 SCF ubiquitin ligase, 99.0 1.5E-11 3.2E-16 113.6 -3.0 203 129-353 154-375 (419)
15 cd00116 LRR_RI Leucine-rich re 98.9 6.6E-10 1.4E-14 110.4 4.6 63 158-220 20-93 (319)
16 KOG3207 Beta-tubulin folding c 98.9 7.8E-11 1.7E-15 114.3 -2.2 152 159-310 119-282 (505)
17 KOG0618 Serine/threonine phosp 98.9 5.8E-11 1.2E-15 124.9 -3.6 302 135-473 69-447 (1081)
18 PRK15370 E3 ubiquitin-protein 98.9 3.6E-09 7.7E-14 114.7 7.5 174 135-330 179-356 (754)
19 PRK15387 E3 ubiquitin-protein 98.9 3.1E-09 6.6E-14 114.7 6.8 250 161-461 201-452 (788)
20 KOG0617 Ras suppressor protein 98.8 9.9E-11 2.1E-15 99.7 -5.7 149 156-308 28-182 (264)
21 KOG0472 Leucine-rich repeat pr 98.8 3.2E-11 6.8E-16 115.7 -10.3 85 340-434 434-540 (565)
22 PF12937 F-box-like: F-box-lik 98.8 5.5E-09 1.2E-13 71.5 3.5 35 10-44 1-35 (47)
23 PRK15370 E3 ubiquitin-protein 98.6 5.1E-08 1.1E-12 105.8 7.7 242 161-432 178-425 (754)
24 KOG1909 Ran GTPase-activating 98.6 8.3E-09 1.8E-13 97.8 0.5 237 101-370 28-307 (382)
25 KOG0618 Serine/threonine phosp 98.6 2.5E-09 5.4E-14 112.9 -4.3 254 163-434 47-322 (1081)
26 KOG1909 Ran GTPase-activating 98.6 3.3E-08 7.2E-13 93.8 3.0 229 159-402 28-310 (382)
27 PF14580 LRR_9: Leucine-rich r 98.5 3.6E-08 7.8E-13 87.4 1.1 125 160-308 18-149 (175)
28 KOG0472 Leucine-rich repeat pr 98.4 3E-10 6.6E-15 109.0 -14.3 239 148-454 78-320 (565)
29 KOG4237 Extracellular matrix p 98.4 3.9E-08 8.4E-13 94.7 -0.5 256 162-432 68-356 (498)
30 PF00646 F-box: F-box domain; 98.3 2E-07 4.4E-12 64.0 1.3 37 10-46 3-39 (48)
31 KOG3207 Beta-tubulin folding c 98.3 2.4E-07 5.2E-12 90.5 2.1 59 160-218 171-232 (505)
32 KOG0617 Ras suppressor protein 98.3 9E-09 2E-13 87.9 -7.6 138 149-288 44-187 (264)
33 PF14580 LRR_9: Leucine-rich r 98.2 2.2E-07 4.9E-12 82.4 -0.0 101 135-241 20-124 (175)
34 smart00256 FBOX A Receptor for 98.2 1.3E-06 2.8E-11 57.7 3.3 34 13-46 1-34 (41)
35 KOG1259 Nischarin, modulator o 98.2 3.9E-07 8.4E-12 84.8 0.6 127 182-310 283-410 (490)
36 KOG3665 ZYG-1-like serine/thre 98.0 1.3E-06 2.9E-11 94.1 0.6 148 161-308 122-284 (699)
37 KOG1947 Leucine rich repeat pr 97.9 3E-06 6.5E-11 89.2 1.3 190 155-352 208-438 (482)
38 KOG1859 Leucine-rich repeat pr 97.9 1.2E-06 2.6E-11 90.7 -1.9 204 99-310 51-290 (1096)
39 KOG4237 Extracellular matrix p 97.8 3.1E-06 6.7E-11 81.9 -0.9 190 135-329 68-355 (498)
40 KOG4658 Apoptotic ATPase [Sign 97.8 7.1E-05 1.5E-09 83.1 9.5 186 121-310 487-679 (889)
41 KOG1259 Nischarin, modulator o 97.8 8E-06 1.7E-10 76.3 1.6 130 269-434 279-411 (490)
42 KOG2982 Uncharacterized conser 97.6 3E-05 6.4E-10 72.5 1.6 83 158-241 42-132 (418)
43 PF13855 LRR_8: Leucine rich r 97.5 4.1E-05 8.9E-10 55.4 1.7 58 161-219 1-60 (61)
44 COG4886 Leucine-rich repeat (L 97.4 7.3E-05 1.6E-09 76.6 2.8 147 158-310 113-266 (394)
45 KOG4658 Apoptotic ATPase [Sign 97.4 2.6E-05 5.7E-10 86.4 -1.0 199 151-353 560-782 (889)
46 PF13855 LRR_8: Leucine rich r 97.3 0.0002 4.3E-09 51.8 3.4 58 252-310 1-60 (61)
47 COG4886 Leucine-rich repeat (L 97.3 0.00011 2.4E-09 75.2 2.2 154 149-308 127-286 (394)
48 KOG1947 Leucine rich repeat pr 97.3 5.4E-05 1.2E-09 79.6 -0.2 132 182-329 187-330 (482)
49 KOG3665 ZYG-1-like serine/thre 97.3 0.00022 4.7E-09 77.3 3.9 35 183-217 122-157 (699)
50 COG5238 RNA1 Ran GTPase-activa 97.1 0.00079 1.7E-08 62.5 5.0 120 180-309 89-224 (388)
51 KOG2982 Uncharacterized conser 97.1 0.00037 8E-09 65.4 2.7 176 134-311 71-261 (418)
52 PLN03150 hypothetical protein; 97.0 0.00084 1.8E-08 72.7 5.3 101 162-263 419-526 (623)
53 PF12799 LRR_4: Leucine Rich r 96.9 0.00084 1.8E-08 44.8 2.9 34 162-195 2-36 (44)
54 PLN03150 hypothetical protein; 96.9 0.00092 2E-08 72.4 4.8 101 184-285 419-526 (623)
55 KOG2739 Leucine-rich acidic nu 96.8 0.00023 5E-09 65.7 -0.9 90 152-241 34-127 (260)
56 KOG2739 Leucine-rich acidic nu 96.7 0.00028 6.1E-09 65.2 -1.1 35 229-263 64-102 (260)
57 PRK15386 type III secretion pr 96.7 0.0049 1.1E-07 61.9 7.5 12 209-220 95-106 (426)
58 KOG1859 Leucine-rich repeat pr 96.3 8.2E-05 1.8E-09 77.5 -7.9 118 163-286 166-291 (1096)
59 KOG1644 U2-associated snRNP A' 96.2 0.0062 1.3E-07 54.3 4.2 60 159-219 62-124 (233)
60 PF12799 LRR_4: Leucine Rich r 96.1 0.0073 1.6E-07 40.2 3.3 33 275-309 2-34 (44)
61 PRK15386 type III secretion pr 96.1 0.016 3.4E-07 58.4 7.1 32 209-240 73-104 (426)
62 KOG2123 Uncharacterized conser 96.0 0.00017 3.8E-09 66.9 -6.4 96 182-280 18-123 (388)
63 KOG0532 Leucine-rich repeat (L 95.8 0.00033 7.3E-09 71.2 -6.1 133 152-288 112-248 (722)
64 KOG1644 U2-associated snRNP A' 95.7 0.026 5.7E-07 50.4 6.2 78 161-241 42-124 (233)
65 KOG0531 Protein phosphatase 1, 95.6 0.0017 3.7E-08 66.9 -1.9 57 161-219 72-129 (414)
66 KOG0532 Leucine-rich repeat (L 95.5 0.00096 2.1E-08 68.0 -4.2 152 152-309 89-244 (722)
67 KOG2123 Uncharacterized conser 95.4 0.00081 1.7E-08 62.6 -4.6 78 230-309 19-98 (388)
68 COG5238 RNA1 Ran GTPase-activa 95.3 0.01 2.3E-07 55.2 2.4 176 120-310 42-253 (388)
69 KOG0531 Protein phosphatase 1, 95.2 0.0026 5.7E-08 65.5 -2.4 104 156-263 90-197 (414)
70 PF07723 LRR_2: Leucine Rich R 94.8 0.038 8.2E-07 32.0 2.9 25 184-208 1-26 (26)
71 KOG0281 Beta-TrCP (transducin 94.7 0.016 3.5E-07 55.3 1.7 38 6-43 71-112 (499)
72 KOG2997 F-box protein FBX9 [Ge 94.4 0.025 5.5E-07 53.6 2.3 36 8-43 105-145 (366)
73 KOG3864 Uncharacterized conser 93.8 0.012 2.7E-07 52.4 -0.9 87 152-238 92-184 (221)
74 KOG3864 Uncharacterized conser 93.8 0.027 5.9E-07 50.3 1.1 65 269-333 120-189 (221)
75 PLN03215 ascorbic acid mannose 92.6 0.086 1.9E-06 52.5 2.8 36 10-45 4-40 (373)
76 PF13306 LRR_5: Leucine rich r 90.7 0.22 4.7E-06 41.7 2.9 14 269-282 76-89 (129)
77 PF13306 LRR_5: Leucine rich r 87.6 0.24 5.2E-06 41.4 1.0 55 159-216 10-66 (129)
78 PF08387 FBD: FBD; InterPro: 87.0 0.11 2.3E-06 35.8 -1.2 29 489-519 6-34 (51)
79 KOG0274 Cdc4 and related F-box 87.0 0.33 7.2E-06 51.3 1.8 39 5-43 103-141 (537)
80 PF13516 LRR_6: Leucine Rich r 85.9 0.69 1.5E-05 26.0 2.0 22 182-203 1-22 (24)
81 PF00560 LRR_1: Leucine Rich R 84.7 0.59 1.3E-05 25.7 1.3 14 162-175 1-14 (22)
82 PF13013 F-box-like_2: F-box-l 82.7 1.1 2.3E-05 36.3 2.5 30 9-38 21-50 (109)
83 smart00367 LRR_CC Leucine-rich 82.6 1.1 2.4E-05 25.8 1.9 22 182-203 1-23 (26)
84 smart00367 LRR_CC Leucine-rich 82.2 0.95 2.1E-05 26.0 1.5 19 298-316 1-19 (26)
85 KOG4579 Leucine-rich repeat (L 80.8 0.37 7.9E-06 40.6 -0.8 58 161-220 53-112 (177)
86 PF13504 LRR_7: Leucine rich r 77.1 2.3 4.9E-05 21.7 1.8 13 162-174 2-14 (17)
87 KOG4579 Leucine-rich repeat (L 76.4 0.17 3.6E-06 42.6 -4.0 57 162-219 28-88 (177)
88 smart00368 LRR_RI Leucine rich 68.0 4.6 9.9E-05 23.7 1.9 21 183-203 2-22 (28)
89 KOG4308 LRR-containing protein 63.4 0.17 3.7E-06 52.7 -8.3 65 156-220 110-184 (478)
90 KOG3763 mRNA export factor TAP 59.7 4.5 9.7E-05 42.1 1.2 38 181-218 216-254 (585)
91 PF08387 FBD: FBD; InterPro: 54.7 14 0.00031 25.2 2.7 38 360-398 13-50 (51)
92 smart00579 FBD domain in FBox 50.3 2.5 5.4E-05 31.3 -1.8 25 493-519 1-25 (72)
93 KOG3763 mRNA export factor TAP 49.5 5.3 0.00011 41.6 -0.2 59 160-220 217-282 (585)
94 PF09372 PRANC: PRANC domain; 44.1 18 0.00038 28.6 2.1 25 8-32 70-94 (97)
95 KOG4408 Putative Mg2+ and Co2+ 41.8 7.3 0.00016 37.7 -0.5 37 10-46 8-44 (386)
96 smart00369 LRR_TYP Leucine-ric 40.8 17 0.00036 20.6 1.1 14 182-195 1-14 (26)
97 smart00370 LRR Leucine-rich re 40.8 17 0.00036 20.6 1.1 14 182-195 1-14 (26)
98 KOG3926 F-box proteins [Amino 39.9 11 0.00025 35.3 0.5 49 9-57 201-256 (332)
99 smart00579 FBD domain in FBox 38.1 37 0.0008 24.9 3.0 39 361-400 5-43 (72)
100 KOG1665 AFH1-interacting prote 37.2 74 0.0016 29.2 5.1 59 181-241 169-227 (302)
101 smart00365 LRR_SD22 Leucine-ri 28.3 35 0.00076 19.7 1.1 13 183-195 2-14 (26)
102 PF03448 MgtE_N: MgtE intracel 20.6 1.4E+02 0.0029 23.4 3.6 31 3-33 39-69 (102)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.5e-19 Score=163.20 Aligned_cols=274 Identities=21% Similarity=0.270 Sum_probs=150.8
Q ss_pred CCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhhccCC---eeEeecCccccccccccccccchhhhhhhhhhhHhHhH
Q 009796 10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFP---VLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRK 86 (525)
Q Consensus 10 is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw~~~~---~l~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 86 (525)
+..|||||+..||+.|+.+|+.+.+.|||||+++-+.-. .++.......
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~---------------------------- 149 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH---------------------------- 149 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC----------------------------
Confidence 578999999999999999999999999999998633211 1222222220
Q ss_pred HHHHHHHHhhccccCCcccceEEEEEeeccccCCchhHHHHHHH--HHHcCCeEEEEEeecCCCCcccCCccccCCCCcc
Q 009796 87 FIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVEL--AMENGVKELDFEVITDKNSVNALPQTIFSAKLLT 164 (525)
Q Consensus 87 ~~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~--~~~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~ 164 (525)
.....+.+ + .+|..|++.-...+ . .+...+ ....+++++|++. .......+-.-+..|..|+
T Consensus 150 -p~~l~~l~-~-----rgV~v~Rlar~~~~----~---prlae~~~~frsRlq~lDLS~--s~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 150 -PDVLGRLL-S-----RGVIVFRLARSFMD----Q---PRLAEHFSPFRSRLQHLDLSN--SVITVSTLHGILSQCSKLK 213 (419)
T ss_pred -hhHHHHHH-h-----CCeEEEEcchhhhc----C---chhhhhhhhhhhhhHHhhcch--hheeHHHHHHHHHHHHhhh
Confidence 11222333 1 23333333311100 0 111111 1233577777765 2222223333344566666
Q ss_pred EEEecCCcCCC--CCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec
Q 009796 165 SLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY 241 (525)
Q Consensus 165 ~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~ 241 (525)
.|.|.|+.+.+ ...++.-.+|+.|+|+.+.. +..+++-++.+|..|.+|+|+.|....+..
T Consensus 214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V---------------- 277 (419)
T KOG2120|consen 214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV---------------- 277 (419)
T ss_pred hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh----------------
Confidence 66666666555 23344455666666666544 555566666666666666666665432210
Q ss_pred cccceEE-EeCCCccEEEecccc-----ccceeeccCCCCccEEEeeCCC-CChhhhhhhhcCCCCCcEEEecCccchhH
Q 009796 242 QELESVE-IAVPSLQQLELSFSR-----VPRLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLEDLSIISLETLER 314 (525)
Q Consensus 242 ~~l~~~~-~~~~~L~~L~l~~~~-----~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~~~~Le~L~L~~c~~l~~ 314 (525)
..+. --.++|..|+++|+. .+...-...||+|..|+|+.+. ++. .....+..++.|++|.++.|..+..
T Consensus 278 ---tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p 353 (419)
T KOG2120|consen 278 ---TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIP 353 (419)
T ss_pred ---hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCCh
Confidence 0000 012444444444444 1112233466777777775544 344 4566677899999999999976432
Q ss_pred hh----hcCcccceEcccccc---chhhhcccCCCcceEE
Q 009796 315 IM----ISSNRLMHLEVYNCS---GLNRINVDAPNLVSFD 347 (525)
Q Consensus 315 ~~----~~~~~L~~L~l~~c~---~L~~l~~~~p~L~~l~ 347 (525)
-. .+.|.|.+|++.+|- .++.+...+|+|+...
T Consensus 354 ~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin~ 393 (419)
T KOG2120|consen 354 ETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKINC 393 (419)
T ss_pred HHeeeeccCcceEEEEeccccCchHHHHHHHhCccccccc
Confidence 11 124789999998863 3455666677775543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=1.4e-16 Score=181.87 Aligned_cols=262 Identities=14% Similarity=0.151 Sum_probs=174.7
Q ss_pred cCCeEEEEEeecCCCCcccCCcccc-CCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
++++.|++.. + .....+|..++ .+++|++|+|++|.+.+....+.+++|++|+|++|.++. .++..++++++|++
T Consensus 93 ~~L~~L~Ls~--n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTINLSN--N-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEECCC--C-ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCCE
Confidence 5788888865 2 22346777776 788999999999888762223568899999999888743 24555788899999
Q ss_pred EEEeecCCCcee--ecccCCCccEEEEeeec--cccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCC
Q 009796 213 LSFFYCFGLKRL--RISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHF 286 (525)
Q Consensus 213 L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~ 286 (525)
|++++|.....+ .+.++++|+.|++++|. ..++.....+++|+.|+++++. ...+..++.+++|+.|+++++.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 999888653332 34567889999988886 1222222357888888888887 45666778888888888888887
Q ss_pred ChhhhhhhhcCCCCCcEEEecCccchhH---hhhcCcccceEccccccch---hhhcccCCCcceEEEecCCCC----cc
Q 009796 287 NDQEFHPLISKFPLLEDLSIISLETLER---IMISSNRLMHLEVYNCSGL---NRINVDAPNLVSFDFEDNPIP----IV 356 (525)
Q Consensus 287 ~~~~~~~ll~~~~~Le~L~L~~c~~l~~---~~~~~~~L~~L~l~~c~~L---~~l~~~~p~L~~l~~~g~~~~----~~ 356 (525)
++. ++..+.++++|+.|+++++..... .....++|+.|++++|.-. .......++|+.|.+.++.+. ..
T Consensus 249 ~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 764 455577888888888887653221 1223467888888775421 122235677788877776542 33
Q ss_pred cccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeee
Q 009796 357 STNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVL 405 (525)
Q Consensus 357 ~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~ 405 (525)
+..+++|+.+++.. +.. ...++..+..+++|+.|+++.|.....
T Consensus 328 ~~~l~~L~~L~L~~-n~l----~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 328 LTSLPRLQVLQLWS-NKF----SGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred HhcCCCCCEEECcC-CCC----cCcCChHHhCCCCCcEEECCCCeeEee
Confidence 44577788888763 221 122344556677777777776655543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.68 E-value=1.9e-16 Score=180.70 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=26.9
Q ss_pred CCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796 160 AKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF 219 (525)
Q Consensus 160 ~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~ 219 (525)
+++|++|+|++|.+.. +..++++++|++|+|++|.+.. .++..+.++++|++|++++|.
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCC
Confidence 3445555555554443 3344445555555555544321 122233444555555555443
No 4
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.63 E-value=7.1e-18 Score=161.52 Aligned_cols=32 Identities=28% Similarity=0.577 Sum_probs=30.8
Q ss_pred CCCHHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796 12 DLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF 43 (525)
Q Consensus 12 ~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~l 43 (525)
.||.|++.+|||+|+++.++|++++|+-|..+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~ 105 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKL 105 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence 59999999999999999999999999999976
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=8.6e-14 Score=159.82 Aligned_cols=272 Identities=18% Similarity=0.178 Sum_probs=140.1
Q ss_pred CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.++.|++.. .....+|..+ ...+|+.|+++++.+.. +.....+++|+.|+|+++..- ..++. ++.+++|++|
T Consensus 590 ~Lr~L~~~~----~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 590 KLRLLRWDK----YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETL 662 (1153)
T ss_pred ccEEEEecC----CCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEE
Confidence 566666644 2234555543 45677777777777665 555666777777777765431 11222 4566777777
Q ss_pred EEeecCCCceee--cccCCCccEEEEeeeccccceEE--EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCC
Q 009796 214 SFFYCFGLKRLR--ISEAHKLKSLILRFTYQELESVE--IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFN 287 (525)
Q Consensus 214 ~L~~c~~l~~l~--i~~l~~L~~L~l~~c~~~l~~~~--~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~ 287 (525)
+|.+|..+..++ +..+++|+.|++++|. .+..+. +++++|+.|++++|. ...+ ...++|+.|+++++.+.
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~-~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p---~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCE-NLEILPTGINLKSLYRLNLSGCSRLKSFP---DISTNISWLDLDETAIE 738 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCC-CcCccCCcCCCCCCCEEeCCCCCCccccc---cccCCcCeeecCCCccc
Confidence 777776655443 3356677777777765 333221 245666666666664 1111 11234444544444332
Q ss_pred hhh----------------------------hhhhhcCCCCCcEEEecCccchhHhh---hcCcccceEccccccchhhh
Q 009796 288 DQE----------------------------FHPLISKFPLLEDLSIISLETLERIM---ISSNRLMHLEVYNCSGLNRI 336 (525)
Q Consensus 288 ~~~----------------------------~~~ll~~~~~Le~L~L~~c~~l~~~~---~~~~~L~~L~l~~c~~L~~l 336 (525)
.-. .......+++|+.|+|++|..+..+. ..+++|+.|++.+|.+++.+
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 100 00001123466666666665433322 22456777777777666554
Q ss_pred cc--cCCCcceEEEecCCCCcccc-cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccc
Q 009796 337 NV--DAPNLVSFDFEDNPIPIVST-NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRS 413 (525)
Q Consensus 337 ~~--~~p~L~~l~~~g~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~ 413 (525)
+. ..++|+.|.++|+..-..+. ...+|+.++++. +. ...++..+..+++|+.|+++.|..... +|
T Consensus 819 P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~-n~-----i~~iP~si~~l~~L~~L~L~~C~~L~~--l~---- 886 (1153)
T PLN03210 819 PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR-TG-----IEEVPWWIEKFSNLSFLDMNGCNNLQR--VS---- 886 (1153)
T ss_pred CCCCCccccCEEECCCCCccccccccccccCEeECCC-CC-----CccChHHHhcCCCCCEEECCCCCCcCc--cC----
Confidence 32 34566666666654221111 134566666642 11 112344456666777766665433332 22
Q ss_pred cCCCCCCCcccceEEEEE
Q 009796 414 CHPSLPLQVESLSLFMES 431 (525)
Q Consensus 414 ~~~~~~~~~~L~~L~L~~ 431 (525)
.....+++|+.|.+.+
T Consensus 887 --~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 887 --LNISKLKHLETVDFSD 902 (1153)
T ss_pred --cccccccCCCeeecCC
Confidence 1233445555555553
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.50 E-value=2.3e-15 Score=149.68 Aligned_cols=242 Identities=15% Similarity=0.091 Sum_probs=135.1
Q ss_pred CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC--CceeecccCCCccEEE
Q 009796 161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLI 236 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~--l~~l~i~~l~~L~~L~ 236 (525)
.++++|+|++|.++. ...+.++.+|.+|.|+.|+++.- ....+.+.|+|+.|+|..|.. .+.+...++++|+.|.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 567777777776665 44556666777777777776432 234455677777777766643 2334455667777777
Q ss_pred Eeeec-cccceEE-EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccch
Q 009796 237 LRFTY-QELESVE-IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL 312 (525)
Q Consensus 237 l~~c~-~~l~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l 312 (525)
+..|. ..+..-. ..+.++++|++..+. .....++-+++.|+.|+|++|.|...... --+-++.|+.|+|++..
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-~WsftqkL~~LdLs~N~-- 328 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-SWSFTQKLKELDLSSNR-- 328 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc-hhhhcccceeEeccccc--
Confidence 76665 3333222 256666666666665 22233455666666666666665542111 12345666666666522
Q ss_pred hHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhccccHHHHHHh
Q 009796 313 ERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGA 388 (525)
Q Consensus 313 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~ 388 (525)
+..|+-.... ....|+.|.++.+.+. ..+..+++|++|+++. +.+... .+.....+..
T Consensus 329 ---------i~~l~~~sf~-------~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~-N~ls~~-IEDaa~~f~g 390 (873)
T KOG4194|consen 329 ---------ITRLDEGSFR-------VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS-NELSWC-IEDAAVAFNG 390 (873)
T ss_pred ---------cccCChhHHH-------HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC-CeEEEE-Eecchhhhcc
Confidence 1111111100 0122333334444332 2344577888888864 222211 2224456677
Q ss_pred ccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796 389 FNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (525)
Q Consensus 389 l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~ 432 (525)
+++|++|.+.+|..+. ||.- .+..+.+|.+|+|.+|
T Consensus 391 l~~LrkL~l~gNqlk~---I~kr-----Afsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKS---IPKR-----AFSGLEALEHLDLGDN 426 (873)
T ss_pred chhhhheeecCceeee---cchh-----hhccCcccceecCCCC
Confidence 8999999998877765 3322 3455888999999887
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.46 E-value=9e-15 Score=145.55 Aligned_cols=283 Identities=16% Similarity=0.149 Sum_probs=167.7
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
.+++++.+.. .....+|.......+|+.|+|.+|.++. ......+|.|++|+|+.|.++.-. ...+..-++|+
T Consensus 102 ~nLq~v~l~~----N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~-~~sfp~~~ni~ 176 (873)
T KOG4194|consen 102 PNLQEVNLNK----NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP-KPSFPAKVNIK 176 (873)
T ss_pred Ccceeeeecc----chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc-CCCCCCCCCce
Confidence 3555555543 3344555554455556666666666655 344555666666666666552210 01122335677
Q ss_pred EEEEeecCC--CceeecccCCCccEEEEeeec-cccceEEE-eCCCccEEEecccc--ccceeeccCCCCccEEEeeCCC
Q 009796 212 DLSFFYCFG--LKRLRISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH 285 (525)
Q Consensus 212 ~L~L~~c~~--l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~ 285 (525)
+|+|++|.. +..-...++.+|..|.++.|. ..++.-.+ .+|.|+.|++..+. ......|.++++|+.|.|..|.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 777777653 222334455677777777775 33333333 37777888777776 1113356777788888877777
Q ss_pred CChhhhhhhhcCCCCCcEEEecCccchhHhh----hcCcccceEccccccchhhhcc----cCCCcceEEEecCCCC---
Q 009796 286 FNDQEFHPLISKFPLLEDLSIISLETLERIM----ISSNRLMHLEVYNCSGLNRINV----DAPNLVSFDFEDNPIP--- 354 (525)
Q Consensus 286 ~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~----~~~~~L~~L~l~~c~~L~~l~~----~~p~L~~l~~~g~~~~--- 354 (525)
+..- -...+-.+.++++|+|..... ..+. .....|+.|++++ +.++.+.+ .+++|+.|+++.+.+.
T Consensus 257 I~kL-~DG~Fy~l~kme~l~L~~N~l-~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 257 ISKL-DDGAFYGLEKMEHLNLETNRL-QAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred cccc-cCcceeeecccceeecccchh-hhhhcccccccchhhhhccch-hhhheeecchhhhcccceeEeccccccccCC
Confidence 6541 123456677788888776432 2111 1234566666664 22333322 3567777777776653
Q ss_pred -cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009796 355 -IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS 433 (525)
Q Consensus 355 -~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~ 433 (525)
.++..+++|++|.+++ +.+.+. -..-+..+++|++|+|+.|.....+ ||... .+..++.|+.|.+.+|.
T Consensus 334 ~~sf~~L~~Le~LnLs~-Nsi~~l----~e~af~~lssL~~LdLr~N~ls~~I---EDaa~--~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSH-NSIDHL----AEGAFVGLSSLHKLDLRSNELSWCI---EDAAV--AFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred hhHHHHHHHhhhhcccc-cchHHH----HhhHHHHhhhhhhhcCcCCeEEEEE---ecchh--hhccchhhhheeecCce
Confidence 3444578889999975 444432 2334678899999999998888775 44322 35568999999999884
Q ss_pred e
Q 009796 434 L 434 (525)
Q Consensus 434 ~ 434 (525)
+
T Consensus 404 l 404 (873)
T KOG4194|consen 404 L 404 (873)
T ss_pred e
Confidence 4
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=9.7e-13 Score=151.24 Aligned_cols=256 Identities=18% Similarity=0.165 Sum_probs=138.0
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCc-CCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCK-LEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
.++++|++.. .....+|..+..+++|+.|+|++|. +...+....+++|++|+|++|..- ..++..+.++++|++
T Consensus 611 ~~L~~L~L~~----s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 611 ENLVKLQMQG----SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLED 685 (1153)
T ss_pred cCCcEEECcC----ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCE
Confidence 3566666544 1233455555666677777776653 222334556677777777666431 124444566677777
Q ss_pred EEEeecCCCceeecc-cCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeec--------------------
Q 009796 213 LSFFYCFGLKRLRIS-EAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDV-------------------- 270 (525)
Q Consensus 213 L~L~~c~~l~~l~i~-~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~-------------------- 270 (525)
|++++|..+..++.. ++++|+.|++++|. .+..+....++|+.|+++++. ...+..+
T Consensus 686 L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 686 LDMSRCENLEILPTGINLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred EeCCCCCCcCccCCcCCCCCCCEEeCCCCC-CccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence 777777665555432 45667777777665 333333234566666666665 2211110
Q ss_pred ----------cCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhh--cCcccceEccccccchhhhcc
Q 009796 271 ----------AECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMI--SSNRLMHLEVYNCSGLNRINV 338 (525)
Q Consensus 271 ----------~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~--~~~~L~~L~l~~c~~L~~l~~ 338 (525)
..+++|+.|+++++..... ++..+.++++|+.|+|++|..++.+.. ..++|+.|++++|.++..+..
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 0123455555555543332 334456667777777777665554432 245667777777766655544
Q ss_pred cCCCcceEEEecCCC---CcccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEe
Q 009796 339 DAPNLVSFDFEDNPI---PIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY 401 (525)
Q Consensus 339 ~~p~L~~l~~~g~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 401 (525)
..++|+.|.+.++.+ |.++..+++|+.+++..+..... +..-+..+++|+.|.++.|.
T Consensus 844 ~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 844 ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCCCc
Confidence 455666666666544 23344566667776654222221 12223455666666666554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.26 E-value=4e-14 Score=141.91 Aligned_cols=299 Identities=14% Similarity=0.114 Sum_probs=200.9
Q ss_pred CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.++-|.|.. .....+|..+..|.+|++|.+++|.+.. .-....+|+||.+.+..|.....+++.-+..+..|..|
T Consensus 33 ~~~WLkLnr----t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 33 QMTWLKLNR----TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred heeEEEech----hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence 566666643 4566788888889999999999888766 55677788999999988888555667667778888888
Q ss_pred EEeecCCCceee--cccCCCccEEEEeeec-c-ccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCCh
Q 009796 214 SFFYCFGLKRLR--ISEAHKLKSLILRFTY-Q-ELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND 288 (525)
Q Consensus 214 ~L~~c~~l~~l~--i~~l~~L~~L~l~~c~-~-~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~ 288 (525)
+|++|.. +..+ +....++-.|++++|. . ....+.+++..|-.|+++.+. ...|..+..+..|++|.|++|.+.-
T Consensus 109 DLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 109 DLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred ecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH
Confidence 8888753 2222 2234678888888886 2 223345677888888999888 6667778888889999998887654
Q ss_pred hhhhhhhcCCCCCcEEEecCccc-hhHhhh---cCcccceEccccccch---hhhcccCCCcceEEEecCCCC---cccc
Q 009796 289 QEFHPLISKFPLLEDLSIISLET-LERIMI---SSNRLMHLEVYNCSGL---NRINVDAPNLVSFDFEDNPIP---IVST 358 (525)
Q Consensus 289 ~~~~~ll~~~~~Le~L~L~~c~~-l~~~~~---~~~~L~~L~l~~c~~L---~~l~~~~p~L~~l~~~g~~~~---~~~~ 358 (525)
--+. -+..+..|+.|++++... +..+.- ...+|..++++ |++| ....-..++|+.|.++|+.+. ....
T Consensus 188 fQLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~ 265 (1255)
T KOG0444|consen 188 FQLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEG 265 (1255)
T ss_pred HHHh-cCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCceeeeeccHH
Confidence 2222 245566677777776432 111111 12456666665 3334 333345678888888888764 2222
Q ss_pred cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCC
Q 009796 359 NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDV 438 (525)
Q Consensus 359 ~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 438 (525)
..-.|+.|+++. + ....++.-+..++.|+.|.+..|...... || ..++++.+|..++..+|-
T Consensus 266 ~W~~lEtLNlSr-N-----QLt~LP~avcKL~kL~kLy~n~NkL~FeG-iP------SGIGKL~~Levf~aanN~----- 327 (1255)
T KOG0444|consen 266 EWENLETLNLSR-N-----QLTVLPDAVCKLTKLTKLYANNNKLTFEG-IP------SGIGKLIQLEVFHAANNK----- 327 (1255)
T ss_pred HHhhhhhhcccc-c-----hhccchHHHhhhHHHHHHHhccCcccccC-Cc------cchhhhhhhHHHHhhccc-----
Confidence 355677777764 2 23345666778888888888877777766 77 367788888887777762
Q ss_pred CchhHHHHHHhHhhhccccceeec
Q 009796 439 VPSEYEILLDDLFWIFYPKNLCLS 462 (525)
Q Consensus 439 ~~~~~~~~~~~Ll~~~~l~~l~l~ 462 (525)
.+-+...|-+|..|++|.|+
T Consensus 328 ----LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 328 ----LELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred ----cccCchhhhhhHHHHHhccc
Confidence 33344556666667777763
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.20 E-value=5.9e-13 Score=133.68 Aligned_cols=261 Identities=18% Similarity=0.146 Sum_probs=173.1
Q ss_pred CCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee-
Q 009796 147 KNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL- 224 (525)
Q Consensus 147 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l- 224 (525)
.-....+|..+|.+..|+.|+|++|.+.. |.....-+++-+|+|++|.+.. ....++.+...|-.|+|++|.. ..+
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrL-e~LP 166 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRL-EMLP 166 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchh-hhcC
Confidence 34556789999999999999999999887 7788888999999999998831 2345667788888899998863 332
Q ss_pred -ecccCCCccEEEEeeec-cccceEEE-eCCCccEEEecccc---ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCC
Q 009796 225 -RISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKF 298 (525)
Q Consensus 225 -~i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~ 298 (525)
.+..+.+|++|++++|. ...+--.+ .+.+|+.|.+++.. ..+|.++..+.+|..++++.|++.. ++.-+-++
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l 244 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKL 244 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhh
Confidence 24456789999999886 11111111 35667778888877 5677788899999999999998876 56667788
Q ss_pred CCCcEEEecCccchhHhhh---cCcccceEcccc----------c--cchhhhcccCCCcceEEEecCCCCcccccCCCC
Q 009796 299 PLLEDLSIISLETLERIMI---SSNRLMHLEVYN----------C--SGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCP 363 (525)
Q Consensus 299 ~~Le~L~L~~c~~l~~~~~---~~~~L~~L~l~~----------c--~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L 363 (525)
++|+.|.|++.. ++.+.. ...+|+.|+++. | +.|+.+-.+.++| .+.| +|...+.+.+|
T Consensus 245 ~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL---~FeG--iPSGIGKL~~L 318 (1255)
T KOG0444|consen 245 RNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL---TFEG--IPSGIGKLIQL 318 (1255)
T ss_pred hhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc---cccC--Cccchhhhhhh
Confidence 999999999853 221111 123455555544 1 1222222222222 1222 23334445555
Q ss_pred ceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796 364 LNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (525)
Q Consensus 364 ~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~ 432 (525)
+..... +...+..++-+..|+.|+.|.|++|.... +|+ .+.-++.|+.|+++.|
T Consensus 319 evf~aa------nN~LElVPEglcRC~kL~kL~L~~NrLiT---LPe------aIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 319 EVFHAA------NNKLELVPEGLCRCVKLQKLKLDHNRLIT---LPE------AIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHHhh------ccccccCchhhhhhHHHHHhcccccceee---chh------hhhhcCCcceeeccCC
Confidence 554443 22244466777888999999998776543 552 3555788888888864
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=3.7e-11 Score=119.38 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=31.1
Q ss_pred CCccccCCCCccEEEecCCcCCC--------CCCCCCCCcccEEEeceeeech---HHHHHHHhCCcCccEEEEeecC
Q 009796 153 LPQTIFSAKLLTSLKLFGCKLEQ--------PSHCANLQSLKKLSLDEVYVND---QMVQSLVRECRVLEDLSFFYCF 219 (525)
Q Consensus 153 lp~~l~~~~~L~~L~L~~~~l~~--------~~~~~~l~~L~~L~L~~~~~~~---~~l~~ll~~c~~Le~L~L~~c~ 219 (525)
++..+...++|+.|+++++.+.. +..+..+++|+.|++++|.+.. ..+..+..+ ++|++|++++|.
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~ 119 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG 119 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc
Confidence 33344445556666666654441 1223345566666666555521 112222222 446666665554
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.08 E-value=4.6e-10 Score=120.94 Aligned_cols=255 Identities=19% Similarity=0.163 Sum_probs=166.0
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
.+-..|++.. .....+|..+. ++|+.|.+.+|.++. |. ..++|++|+|++|.++. ++. ..++|++
T Consensus 201 ~~~~~LdLs~----~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGE----SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLE 266 (788)
T ss_pred CCCcEEEcCC----CCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccce
Confidence 3456666654 23446787665 479999999998886 43 36899999999998742 332 2478999
Q ss_pred EEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796 213 LSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (525)
Q Consensus 213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 291 (525)
|++.+|.. ..+.. ..++|+.|++++|. +..+....++|+.|++++|. ...+. ..++|+.|++++|.++. +
T Consensus 267 L~Ls~N~L-~~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~--L 337 (788)
T PRK15387 267 LSIFSNPL-THLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS--L 337 (788)
T ss_pred eeccCCch-hhhhh-chhhcCEEECcCCc--cccccccccccceeECCCCccccCCC---CcccccccccccCcccc--c
Confidence 99988853 33322 13678999999885 44443345889999999987 32222 22468888898888865 3
Q ss_pred hhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEee
Q 009796 292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNF 371 (525)
Q Consensus 292 ~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~ 371 (525)
+.+ .++|+.|+|+++. ++.+.....+|+.|.+++ ..+..+....++|+.|.++++.+.......++|+.++++.
T Consensus 338 P~l---p~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~-N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~- 411 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQ-LASLPTLPSELYKLWAYN-NRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG- 411 (788)
T ss_pred ccc---ccccceEecCCCc-cCCCCCCCcccceehhhc-cccccCcccccccceEEecCCcccCCCCcccCCCEEEccC-
Confidence 332 2479999998854 444333346788887765 2344444444678889888876541111246788888874
Q ss_pred ecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796 372 GDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 372 ~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
+.+.. ++.+ ..+|+.|+++.|.+. . +|+ .+..+.+|+.|.|.+|.+
T Consensus 412 N~Lss-----IP~l---~~~L~~L~Ls~NqLt--~-LP~------sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 412 NRLTS-----LPML---PSGLLSLSVYRNQLT--R-LPE------SLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CcCCC-----CCcc---hhhhhhhhhccCccc--c-cCh------HHhhccCCCeEECCCCCC
Confidence 22221 2222 346777888877665 2 552 455678999999999843
No 13
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.08 E-value=5.8e-12 Score=121.36 Aligned_cols=173 Identities=23% Similarity=0.330 Sum_probs=110.3
Q ss_pred CCccEEEecCCcCCC----CCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCCceeecc----cCCC
Q 009796 161 KLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS----EAHK 231 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~----~l~~ 231 (525)
..|+.|.++||.-.+ .....+||++++|.+.+|.. ++..+.++...|+.|++|++..|..++...+. +|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 467888888875333 33456788888888888866 77778888888888888888888776654432 6788
Q ss_pred ccEEEEeeec----cccceEEEeCCCccEEEeccccccc----eeeccCCCCccEEEe-eCCCCChhhhhhhhcCCCCCc
Q 009796 232 LKSLILRFTY----QELESVEIAVPSLQQLELSFSRVPR----LLDVAECPHLRKLVL-FLPHFNDQEFHPLISKFPLLE 302 (525)
Q Consensus 232 L~~L~l~~c~----~~l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~L-~~~~~~~~~~~~ll~~~~~Le 302 (525)
|+.|+++.|. .+++...-++..++.+.+.||.... ...-+.++.+.++++ ..+.+++..+..+..++..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888887 2233333456667777666665111 111234455555665 334566666666666777777
Q ss_pred EEEecCccchhH-----hhhcCcccceEccccccch
Q 009796 303 DLSIISLETLER-----IMISSNRLMHLEVYNCSGL 333 (525)
Q Consensus 303 ~L~L~~c~~l~~-----~~~~~~~L~~L~l~~c~~L 333 (525)
.|..++|..+++ ++..+++|+.|.+..|..+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence 777777765433 3444566666666666543
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.5e-11 Score=113.57 Aligned_cols=203 Identities=19% Similarity=0.236 Sum_probs=125.2
Q ss_pred HHHHHcCCeEEEEEeecCCCCcccCCccccCC-CCccEEEecCCcCCC---CCCCCCCCcccEEEeceeeechHHHHHHH
Q 009796 129 ELAMENGVKELDFEVITDKNSVNALPQTIFSA-KLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLV 204 (525)
Q Consensus 129 ~~~~~~~l~~L~l~~~~~~~~~~~lp~~l~~~-~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll 204 (525)
.....++|..+.+... ....-.+-....-+ ..||+|+|++..++. ......|.+|+.|+|.+++.+|. +..-+
T Consensus 154 ~~l~~rgV~v~Rlar~--~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~i 230 (419)
T KOG2120|consen 154 GRLLSRGVIVFRLARS--FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTI 230 (419)
T ss_pred HHHHhCCeEEEEcchh--hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-HHHHH
Confidence 3445567777776431 11111121111111 357888887766554 23345677788888887777554 44446
Q ss_pred hCCcCccEEEEeecCCCceee----cccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeecc-CCCCccEE
Q 009796 205 RECRVLEDLSFFYCFGLKRLR----ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVA-ECPHLRKL 279 (525)
Q Consensus 205 ~~c~~Le~L~L~~c~~l~~l~----i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~L~~L 279 (525)
+.-.+|+.|+|+.|.+++.-. +.+|..|..|+++.|. ..... ..+.+. --++|+.|
T Consensus 231 AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~-l~~~~------------------Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 231 AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF-LFTEK------------------VTVAVAHISETLTQL 291 (419)
T ss_pred hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh-ccchh------------------hhHHHhhhchhhhhh
Confidence 666777788887777766533 2355666666665554 11110 111111 23578999
Q ss_pred EeeCCC--CChhhhhhhhcCCCCCcEEEecCccchhH----hhhcCcccceEccccccch---hhhc-ccCCCcceEEEe
Q 009796 280 VLFLPH--FNDQEFHPLISKFPLLEDLSIISLETLER----IMISSNRLMHLEVYNCSGL---NRIN-VDAPNLVSFDFE 349 (525)
Q Consensus 280 ~L~~~~--~~~~~~~~ll~~~~~Le~L~L~~c~~l~~----~~~~~~~L~~L~l~~c~~L---~~l~-~~~p~L~~l~~~ 349 (525)
+|++.. +....+.-+...||+|.+|+|++|.+++. ....++.|++|+++.|..+ +.++ ...|.|.+|+..
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence 997753 33334667788999999999999987654 2234789999999999876 2222 357999999999
Q ss_pred cCCC
Q 009796 350 DNPI 353 (525)
Q Consensus 350 g~~~ 353 (525)
|+.-
T Consensus 372 g~vs 375 (419)
T KOG2120|consen 372 GCVS 375 (419)
T ss_pred cccC
Confidence 9864
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=6.6e-10 Score=110.38 Aligned_cols=63 Identities=21% Similarity=0.052 Sum_probs=34.6
Q ss_pred cCCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceeeec--hHH---HHHHHhCCcCccEEEEeecCC
Q 009796 158 FSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVN--DQM---VQSLVRECRVLEDLSFFYCFG 220 (525)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~--~~~---l~~ll~~c~~Le~L~L~~c~~ 220 (525)
....+|+.|++++|.+.. +......++|++|+++++.+. ... +...+..+++|++|++++|..
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 344557777777776643 223345566677776666553 222 223344566666666666654
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=7.8e-11 Score=114.28 Aligned_cols=152 Identities=19% Similarity=0.148 Sum_probs=117.0
Q ss_pred CCCCccEEEecCCcCCC-C--CCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCCce---eecccCCC
Q 009796 159 SAKLLTSLKLFGCKLEQ-P--SHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKR---LRISEAHK 231 (525)
Q Consensus 159 ~~~~L~~L~L~~~~l~~-~--~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l~~---l~i~~l~~ 231 (525)
+.++|+...|.++.+.. + .....|++++.|+|++|-+ .=..+.+++..+|+||.|+|+.|..... .....++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 46788999999987776 2 3567899999999999988 5556788889999999999999865222 22224689
Q ss_pred ccEEEEeeec---cccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEe
Q 009796 232 LKSLILRFTY---QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI 306 (525)
Q Consensus 232 L~~L~l~~c~---~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L 306 (525)
|+.|.+++|. ..+..+...+|+|+.|++.++. .........+..|+.|+|++|++-+.........+|+|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999997 2344555689999999999995 3233345567789999999998776444456788999999999
Q ss_pred cCcc
Q 009796 307 ISLE 310 (525)
Q Consensus 307 ~~c~ 310 (525)
+.|.
T Consensus 279 s~tg 282 (505)
T KOG3207|consen 279 SSTG 282 (505)
T ss_pred cccC
Confidence 8864
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.92 E-value=5.8e-11 Score=124.87 Aligned_cols=302 Identities=18% Similarity=0.164 Sum_probs=167.1
Q ss_pred CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.++.+.+.. ...+..|.++.+..+|++|.|.++.+.. |..+..+.+|+.|++++|.+.. ++..+..+..++++
T Consensus 69 ~L~~ln~s~----n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 69 HLRQLNLSR----NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEEL 142 (1081)
T ss_pred HHhhcccch----hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHH
Confidence 455555433 2334556666666777777777776665 6666777777777777776632 22233333333333
Q ss_pred EEeec-----------------------------------------CCCceeecccCCCccEEEEeeeccccceEEEeCC
Q 009796 214 SFFYC-----------------------------------------FGLKRLRISEAHKLKSLILRFTYQELESVEIAVP 252 (525)
Q Consensus 214 ~L~~c-----------------------------------------~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~ 252 (525)
..++| ... .+....+++|+.|....+ .+..+.+.-|
T Consensus 143 ~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~dls~~~~l~~l~c~rn--~ls~l~~~g~ 219 (1081)
T KOG0618|consen 143 AASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLDLSNLANLEVLHCERN--QLSELEISGP 219 (1081)
T ss_pred hhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-hhhhhhccchhhhhhhhc--ccceEEecCc
Confidence 33333 211 222233444444444333 4566666778
Q ss_pred CccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhh---cCcccceEcccc
Q 009796 253 SLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMI---SSNRLMHLEVYN 329 (525)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~---~~~~L~~L~l~~ 329 (525)
+|+.|+..+|.......-..-.+|+.++++.+.++. ++.++..|.+|+.|.+..... ..+.. ..+.|+.|.+..
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhc--chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhh
Confidence 888888888772222222334578999999988887 568888999999998887432 22111 123455554444
Q ss_pred ccchhhh---cccCCCcceEEEecCCCC---cccc--------------------------cCCCCceEEEEeeecCChh
Q 009796 330 CSGLNRI---NVDAPNLVSFDFEDNPIP---IVST--------------------------NAPCPLNVLFSNFGDIDTH 377 (525)
Q Consensus 330 c~~L~~l---~~~~p~L~~l~~~g~~~~---~~~~--------------------------~~~~L~~l~l~~~~~~~~~ 377 (525)
+. ++++ ......|++|++..+.++ ..+. ..+.|+++.+- ++.
T Consensus 297 ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla-----nN~ 370 (1081)
T KOG0618|consen 297 NE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA-----NNH 370 (1081)
T ss_pred hh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh-----cCc
Confidence 32 2111 112234455555444432 0000 11222222222 112
Q ss_pred ccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhcccc
Q 009796 378 WYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPK 457 (525)
Q Consensus 378 ~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~ 457 (525)
+.......+.++.+||.|+|++|.... +|. ..+.++..|++|.|++| ....+.+-+..+.+|+
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~---fpa-----s~~~kle~LeeL~LSGN---------kL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNS---FPA-----SKLRKLEELEELNLSGN---------KLTTLPDTVANLGRLH 433 (1081)
T ss_pred ccccchhhhccccceeeeeeccccccc---CCH-----HHHhchHHhHHHhcccc---------hhhhhhHHHHhhhhhH
Confidence 222334557888999999999887653 331 14567889999999998 3555555555566777
Q ss_pred ceeecCCCCCchhhHH
Q 009796 458 NLCLSPENWRYRPFVM 473 (525)
Q Consensus 458 ~l~l~~~~~~~~~~~~ 473 (525)
||..++- +-..|+|
T Consensus 434 tL~ahsN--~l~~fPe 447 (1081)
T KOG0618|consen 434 TLRAHSN--QLLSFPE 447 (1081)
T ss_pred HHhhcCC--ceeechh
Confidence 7777554 3344443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.86 E-value=3.6e-09 Score=114.73 Aligned_cols=174 Identities=15% Similarity=0.115 Sum_probs=95.6
Q ss_pred CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
+..+|++.. .....+|..+. ++|+.|+|++|.+.. |... +++|++|++++|.++. ++..+ .++|+.|
T Consensus 179 ~~~~L~L~~----~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L 246 (754)
T PRK15370 179 NKTELRLKI----LGLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQEM 246 (754)
T ss_pred CceEEEeCC----CCcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hccccEE
Confidence 455666544 23345565443 468888888888776 4332 3588888888887631 22222 2468888
Q ss_pred EEeecCCCceeecccCCCccEEEEeeeccccceEEEe-CCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796 214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIA-VPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (525)
Q Consensus 214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~-~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 291 (525)
+|++|.. ..++..-..+|+.|++++|. +..+.-. .++|+.|++++|. ...+..+ .++|+.|++++|.++. +
T Consensus 247 ~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~--L 319 (754)
T PRK15370 247 ELSINRI-TELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA--L 319 (754)
T ss_pred ECcCCcc-CcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc--C
Confidence 8887753 23322222467888887664 2222211 2477777777776 2222222 1357777777776654 2
Q ss_pred hhhhcCCCCCcEEEecCccchhHhhh-cCcccceEccccc
Q 009796 292 HPLISKFPLLEDLSIISLETLERIMI-SSNRLMHLEVYNC 330 (525)
Q Consensus 292 ~~ll~~~~~Le~L~L~~c~~l~~~~~-~~~~L~~L~l~~c 330 (525)
+.. ..++|+.|++++|. ++.+.. .+++|+.|+++++
T Consensus 320 P~~--l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N 356 (754)
T PRK15370 320 PET--LPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN 356 (754)
T ss_pred Ccc--ccccceeccccCCc-cccCChhhcCcccEEECCCC
Confidence 211 12567777776654 222211 1245555555553
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=3.1e-09 Score=114.70 Aligned_cols=250 Identities=16% Similarity=0.073 Sum_probs=162.9
Q ss_pred CCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEee
Q 009796 161 KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRF 239 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~ 239 (525)
..-..|+++.+.+.. |..+. ++|+.|++.+|.++. ++. ..++|++|++++|. ++.++. ..++|+.|++.+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~--LP~---lp~~Lk~LdLs~N~-LtsLP~-lp~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQ-LTSLPV-LPPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC--CCC---CCCCCcEEEecCCc-cCcccC-cccccceeeccC
Confidence 456789999998887 55443 589999999998742 332 36899999999984 444432 247899999998
Q ss_pred eccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhc
Q 009796 240 TYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMIS 318 (525)
Q Consensus 240 c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~ 318 (525)
|. +..+....++|+.|++++|. ...+. ..++|+.|++++|.++. ++.+ ..+|+.|.++++. ++.+...
T Consensus 272 N~--L~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~--Lp~l---p~~L~~L~Ls~N~-L~~LP~l 340 (788)
T PRK15387 272 NP--LTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS--LPAL---PSELCKLWAYNNQ-LTSLPTL 340 (788)
T ss_pred Cc--hhhhhhchhhcCEEECcCCccccccc---cccccceeECCCCcccc--CCCC---cccccccccccCc-ccccccc
Confidence 85 33332234679999999987 33322 34789999999998876 3332 3468888888754 3333333
Q ss_pred CcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEE
Q 009796 319 SNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLS 398 (525)
Q Consensus 319 ~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~ 398 (525)
..+|+.|++++ .++..+....++|+.|.+.++.+.......++|+.++++. +.+. .+....++|+.|+++
T Consensus 341 p~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~-N~Lt--------~LP~l~s~L~~LdLS 410 (788)
T PRK15387 341 PSGLQELSVSD-NQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSG-NRLT--------SLPVLPSELKELMVS 410 (788)
T ss_pred ccccceEecCC-CccCCCCCCCcccceehhhccccccCcccccccceEEecC-Cccc--------CCCCcccCCCEEEcc
Confidence 35799999987 3455554445677888777765431011235788888874 2222 122234688999999
Q ss_pred EEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceee
Q 009796 399 LNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCL 461 (525)
Q Consensus 399 ~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l 461 (525)
.|.+.. +| .. +.+|+.|.+..|.+ ..+...+...+.++.|.+
T Consensus 411 ~N~Lss---IP-------~l--~~~L~~L~Ls~NqL---------t~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 411 GNRLTS---LP-------ML--PSGLLSLSVYRNQL---------TRLPESLIHLSSETTVNL 452 (788)
T ss_pred CCcCCC---CC-------cc--hhhhhhhhhccCcc---------cccChHHhhccCCCeEEC
Confidence 876542 44 11 34678888888733 233444445567888887
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.80 E-value=9.9e-11 Score=99.72 Aligned_cols=149 Identities=20% Similarity=0.169 Sum_probs=112.6
Q ss_pred cccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC-CceeecccCCCcc
Q 009796 156 TIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG-LKRLRISEAHKLK 233 (525)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~-l~~l~i~~l~~L~ 233 (525)
.++.+.+.+.|.|++|+++. |+.++.+.+|+.|++++|++.+ ++.-++..|.|+.|++.-+.. .-.-...++|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 46677888889999998887 8888889999999999988743 566678889999998876643 1122345678888
Q ss_pred EEEEeeec---cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecC
Q 009796 234 SLILRFTY---QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIIS 308 (525)
Q Consensus 234 ~L~l~~c~---~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~ 308 (525)
.|++.++. ..++.-.+.+..|+.|+++++. ...+..++.+++|+.|.+..+.+-. ++.-++.+..|+.|++.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence 88888876 3344444567778888898888 5667788999999999998777654 555566777788888877
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.78 E-value=3.2e-11 Score=115.66 Aligned_cols=85 Identities=15% Similarity=0.022 Sum_probs=56.5
Q ss_pred CCCcceEEEecCCC---CcccccCCCCceEEEEeeecCChh------------------c-cccHHHHHHhccccceEEE
Q 009796 340 APNLVSFDFEDNPI---PIVSTNAPCPLNVLFSNFGDIDTH------------------W-YLNLMEFIGAFNQIGELHL 397 (525)
Q Consensus 340 ~p~L~~l~~~g~~~---~~~~~~~~~L~~l~l~~~~~~~~~------------------~-~~~l~~~l~~l~~L~~L~L 397 (525)
.++|..|+++.+.. |..++.+-.|+.+++++ +.+... . ...-..-+.++.+|++|++
T Consensus 434 l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hhcceeeecccchhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 46788888887653 55566677799999984 211100 0 0001122667899999999
Q ss_pred EEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796 398 SLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 398 ~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
..|.... +| |.++.+.+|+||.|.+|+.
T Consensus 513 ~nNdlq~---IP------p~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 513 QNNDLQQ---IP------PILGNMTNLRHLELDGNPF 540 (565)
T ss_pred CCCchhh---CC------hhhccccceeEEEecCCcc
Confidence 8666543 56 4688899999999999943
No 22
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.78 E-value=5.5e-09 Score=71.48 Aligned_cols=35 Identities=37% Similarity=0.821 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhh
Q 009796 10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ 44 (525)
Q Consensus 10 is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw 44 (525)
|+.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999874
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.64 E-value=5.1e-08 Score=105.83 Aligned_cols=242 Identities=15% Similarity=0.093 Sum_probs=151.6
Q ss_pred CCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEee
Q 009796 161 KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRF 239 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~ 239 (525)
.+...|+++++.++. |... .++|+.|+|++|.++. ++..+ +++|++|++++|. +..++..-.++|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI--PEQITTLILDNNELKS--LPENL--QGNIKTLYANSNQ-LTSIPATLPDTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCc-cccCChhhhccccEEECcC
Confidence 467889999988876 4333 3589999999998842 33322 3689999999885 4444432235899999999
Q ss_pred eccccceEEE-eCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhh
Q 009796 240 TYQELESVEI-AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMI 317 (525)
Q Consensus 240 c~~~l~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~ 317 (525)
|. +..+.. -..+|+.|+++++. ...+..+ .++|+.|++++|.++. ++..+ .++|+.|+++++.. +.+..
T Consensus 251 N~--L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N~L-t~LP~ 321 (754)
T PRK15370 251 NR--ITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSNSL-TALPE 321 (754)
T ss_pred Cc--cCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCCcc-ccCCc
Confidence 86 333321 13579999999887 3333333 3589999999998875 22212 24688888887642 22221
Q ss_pred -cCcccceEccccccchhhhccc-CCCcceEEEecCCCC-cccccCCCCceEEEEeeecCChhccccHHHHHHhccccce
Q 009796 318 -SSNRLMHLEVYNCSGLNRINVD-APNLVSFDFEDNPIP-IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGE 394 (525)
Q Consensus 318 -~~~~L~~L~l~~c~~L~~l~~~-~p~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~ 394 (525)
.+++|+.|.+.++. +..+... .++|+.|.++++.+. +...-.++|+.|+++. +.+. .....+. .+|+.
T Consensus 322 ~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~-N~Lt----~LP~~l~---~sL~~ 392 (754)
T PRK15370 322 TLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSR-NALT----NLPENLP---AALQI 392 (754)
T ss_pred cccccceeccccCCc-cccCChhhcCcccEEECCCCCCCcCChhhcCCcCEEECCC-CcCC----CCCHhHH---HHHHH
Confidence 23678889888764 4333322 258889988887653 1111146788888874 2222 1112222 35778
Q ss_pred EEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796 395 LHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (525)
Q Consensus 395 L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~ 432 (525)
|++++|.... +|+.+.. .....+++..|.|..|
T Consensus 393 LdLs~N~L~~---LP~sl~~--~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 393 MQASRNNLVR---LPESLPH--FRGEGPQPTRIIVEYN 425 (754)
T ss_pred HhhccCCccc---CchhHHH--HhhcCCCccEEEeeCC
Confidence 8888776652 4422111 1223477888999888
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=8.3e-09 Score=97.81 Aligned_cols=237 Identities=18% Similarity=0.219 Sum_probs=120.0
Q ss_pred CCcccceEEEEEeeccccCCchhHHHHHHHHHHc--CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCC
Q 009796 101 LGFPMQKLRISVSLLEVKESSPLFDKWVELAMEN--GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSH 178 (525)
Q Consensus 101 ~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~--~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~ 178 (525)
+...+.++++.-. ..+....+|+....++ .+++.+++..........+|..+..+ ...
T Consensus 28 ~~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l---------------~~a 87 (382)
T KOG1909|consen 28 PMDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML---------------SKA 87 (382)
T ss_pred ccCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH---------------HHH
Confidence 3456777766533 2356778888887764 56666654422222223333322110 123
Q ss_pred CCCCCcccEEEeceeee---chHHHHHHHhCCcCccEEEEeecCCCc-----------eee----cccCCCccEEEEeee
Q 009796 179 CANLQSLKKLSLDEVYV---NDQMVQSLVRECRVLEDLSFFYCFGLK-----------RLR----ISEAHKLKSLILRFT 240 (525)
Q Consensus 179 ~~~l~~L~~L~L~~~~~---~~~~l~~ll~~c~~Le~L~L~~c~~l~-----------~l~----i~~l~~L~~L~l~~c 240 (525)
...+|+|++|+||.|.+ ....+..++++|..|++|.|.+|..-. .+. +.+-+.|+.+....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34567777888888777 345567788999999999998885411 111 112255666666555
Q ss_pred c-cc--cceE---EEeCCCccEEEecccc-cc-----ceeeccCCCCccEEEeeCCCCChh---hhhhhhcCCCCCcEEE
Q 009796 241 Y-QE--LESV---EIAVPSLQQLELSFSR-VP-----RLLDVAECPHLRKLVLFLPHFNDQ---EFHPLISKFPLLEDLS 305 (525)
Q Consensus 241 ~-~~--l~~~---~~~~~~L~~L~l~~~~-~~-----~~~~~~~l~~L~~L~L~~~~~~~~---~~~~ll~~~~~Le~L~ 305 (525)
. .. -..+ .-..|.|+.+.+..+. .+ ....+..|++|+.|+|..|.++.. .+...++.+++|+.|.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 4 11 1111 0123555555555444 11 111344455555555555544432 2233344445555555
Q ss_pred ecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC--------cccccCCCCceEEEEe
Q 009796 306 IISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP--------IVSTNAPCPLNVLFSN 370 (525)
Q Consensus 306 L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~--------~~~~~~~~L~~l~l~~ 370 (525)
+++|..-..=.+ .-...+...+|+|+.+++.|+.+. .+....+.|++|+++.
T Consensus 248 l~dcll~~~Ga~-------------a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 248 LGDCLLENEGAI-------------AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred ccccccccccHH-------------HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 555421000000 001334445677777776666553 2233467778888874
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.58 E-value=2.5e-09 Score=112.85 Aligned_cols=254 Identities=21% Similarity=0.182 Sum_probs=112.2
Q ss_pred ccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC-CceeecccCCCccEEEEeee
Q 009796 163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG-LKRLRISEAHKLKSLILRFT 240 (525)
Q Consensus 163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~-l~~l~i~~l~~L~~L~l~~c 240 (525)
|++|++++|.+.. |..+..+++|+.|+++.|.+. .++.-+++..+|++|+|.++.. .....+..+.+|+.|+++++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 5555555555544 444444555555555555441 1223344455555555554432 11122333455555555555
Q ss_pred c-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcC
Q 009796 241 Y-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISS 319 (525)
Q Consensus 241 ~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~ 319 (525)
. ...+.+...+..++.+..+++. ....++... ++.+++..+.+.+..... +.++.+ .|+|............+
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~--~~~~lg~~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~~~dls~~ 198 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNE--KIQRLGQTS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEMEVLDLSNL 198 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcch--hhhhhcccc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhhhhhhhhc
Confidence 4 1222222234444444444442 001112212 455555554444331111 111111 35555433321111122
Q ss_pred cccceEccccccchhhhcccCCCcceEEEecCCCCcccc--cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEE
Q 009796 320 NRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVST--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHL 397 (525)
Q Consensus 320 ~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L 397 (525)
++|+.|... +..+..+.+..|+|+.+....+....... ....|+.+++++ .....+++++..+.+|+.+.+
T Consensus 199 ~~l~~l~c~-rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~------n~l~~lp~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 199 ANLEVLHCE-RNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH------NNLSNLPEWIGACANLEALNA 271 (1081)
T ss_pred cchhhhhhh-hcccceEEecCcchheeeeccCcceeeccccccccceeeecch------hhhhcchHHHHhcccceEecc
Confidence 333333322 23444555555666666555554331111 133456666653 112234466666777776666
Q ss_pred EEEeeeeeeeeccc----------------cccC-CCCCCCcccceEEEEEeee
Q 009796 398 SLNYKQVLFNIDEF----------------RSCH-PSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 398 ~~~~~~~~~~lp~~----------------~~~~-~~~~~~~~L~~L~L~~~~~ 434 (525)
.+|.... +|.. +... +....+..|++|.|+.|.+
T Consensus 272 n~N~l~~---lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 272 NHNRLVA---LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred cchhHHh---hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 6655422 1110 0111 2344588899999997743
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.56 E-value=3.3e-08 Score=93.82 Aligned_cols=229 Identities=19% Similarity=0.205 Sum_probs=147.4
Q ss_pred CCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceeee---chH------HHHHHHhCCcCccEEEEeecCC-Cc
Q 009796 159 SAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYV---NDQ------MVQSLVRECRVLEDLSFFYCFG-LK 222 (525)
Q Consensus 159 ~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~---~~~------~l~~ll~~c~~Le~L~L~~c~~-l~ 222 (525)
...+++.|+|++|.+.. .....+-++|+.-+++..-- .+. .+...+..||.|++|+|+.|-. ..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 45678999999998765 23445667888888886532 111 2334467899999999999954 22
Q ss_pred ee-----ecccCCCccEEEEeeeccc------c---------ceEEEeCCCccEEEecccc-c-----cceeeccCCCCc
Q 009796 223 RL-----RISEAHKLKSLILRFTYQE------L---------ESVEIAVPSLQQLELSFSR-V-----PRLLDVAECPHL 276 (525)
Q Consensus 223 ~l-----~i~~l~~L~~L~l~~c~~~------l---------~~~~~~~~~L~~L~l~~~~-~-----~~~~~~~~l~~L 276 (525)
.+ -+.+|..|+.|.+.+|.-+ + ....-..|.|+.+....|. . .....+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 22 1456899999999999610 0 0111246889999998887 1 122356778999
Q ss_pred cEEEeeCCCCChhh---hhhhhcCCCCCcEEEecCccc-------hhHhhhcCcccceEccccccchhhhcccCCCcceE
Q 009796 277 RKLVLFLPHFNDQE---FHPLISKFPLLEDLSIISLET-------LERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSF 346 (525)
Q Consensus 277 ~~L~L~~~~~~~~~---~~~ll~~~~~Le~L~L~~c~~-------l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l 346 (525)
+.+.+..|.|.... +..-+..|++|+.|+|....- +.......++|+.|++.+|. ++.
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~----------- 255 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LEN----------- 255 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-ccc-----------
Confidence 99999888876543 344577899999999987532 22222234567777776663 100
Q ss_pred EEecCCC-Cccc-ccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEee
Q 009796 347 DFEDNPI-PIVS-TNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYK 402 (525)
Q Consensus 347 ~~~g~~~-~~~~-~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~ 402 (525)
.|..- -..+ ...|+|+.+.+.+ +.+.......+..-+...+.|+.|.|+.|..
T Consensus 256 --~Ga~a~~~al~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 256 --EGAIAFVDALKESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred --ccHHHHHHHHhccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 01000 0011 1268899999875 4444443334444566689999999998877
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=3.6e-08 Score=87.43 Aligned_cols=125 Identities=22% Similarity=0.230 Sum_probs=32.7
Q ss_pred CCCccEEEecCCcCCCCCCCC-CCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796 160 AKLLTSLKLFGCKLEQPSHCA-NLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR 238 (525)
Q Consensus 160 ~~~L~~L~L~~~~l~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~ 238 (525)
+..+++|+|.+|.++.....+ .+.+|+.|+|++|.+.. +.. +..++.|++|++++|...
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~----------------- 77 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRIS----------------- 77 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS--------------------
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCC-----------------
Confidence 445666666666665522222 45666666666665521 111 223445555555444321
Q ss_pred eeccccce-EEEeCCCccEEEecccc---ccceeeccCCCCccEEEeeCCCCChhh--hhhhhcCCCCCcEEEecC
Q 009796 239 FTYQELES-VEIAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQE--FHPLISKFPLLEDLSIIS 308 (525)
Q Consensus 239 ~c~~~l~~-~~~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~~~--~~~ll~~~~~Le~L~L~~ 308 (525)
.+.. +.-.+|+|++|+++++. ......++.+++|+.|++.+|.++... -..++..+|+|+.|+-..
T Consensus 78 ----~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 78 ----SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ----ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 1110 00124555555555544 111223455666666666666655421 123345566666655443
No 28
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.43 E-value=3e-10 Score=109.04 Aligned_cols=239 Identities=19% Similarity=0.122 Sum_probs=148.8
Q ss_pred CCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce-ee
Q 009796 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LR 225 (525)
Q Consensus 148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~-l~ 225 (525)
..-..+|+++.....++.|+.+++++.. |...+.+++|+.|+.+++.+.. +..-++.|..|++|+..+|...+- -.
T Consensus 78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N~i~slp~~ 155 (565)
T KOG0472|consen 78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNNQISSLPED 155 (565)
T ss_pred chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhccccccccCchH
Confidence 3456788888888888888888888777 7788888888888888887632 333456677888888877754221 22
Q ss_pred cccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcE
Q 009796 226 ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLED 303 (525)
Q Consensus 226 i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~ 303 (525)
+.+|.+|..+++.++. ..+..-.++...|++|+...+. ...|..++.+.+|..|+|..+.+.. ++ -+.+|..|.+
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~--lP-ef~gcs~L~E 232 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF--LP-EFPGCSLLKE 232 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc--CC-CCCccHHHHH
Confidence 3456677777777775 2333333456778888877777 6677778888888888887777654 33 3455566665
Q ss_pred EEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEeeecCChhccccHH
Q 009796 304 LSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLM 383 (525)
Q Consensus 304 L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~ 383 (525)
|+++. .+++.|.-..|+ +++++..+++.. +. ....+
T Consensus 233 lh~g~-----------N~i~~lpae~~~---------------------------~L~~l~vLDLRd-Nk-----lke~P 268 (565)
T KOG0472|consen 233 LHVGE-----------NQIEMLPAEHLK---------------------------HLNSLLVLDLRD-NK-----LKEVP 268 (565)
T ss_pred HHhcc-----------cHHHhhHHHHhc---------------------------ccccceeeeccc-cc-----cccCc
Confidence 55554 122221111111 244455555542 11 11122
Q ss_pred HHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhc
Q 009796 384 EFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIF 454 (525)
Q Consensus 384 ~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~ 454 (525)
.-+.-+.+|++|+++.|.+.. +| +.++.+ .|+.|.+.+| | ..-+...+.++.
T Consensus 269 de~clLrsL~rLDlSNN~is~---Lp------~sLgnl-hL~~L~leGN----P-----lrTiRr~ii~~g 320 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDISS---LP------YSLGNL-HLKFLALEGN----P-----LRTIRREIISKG 320 (565)
T ss_pred hHHHHhhhhhhhcccCCcccc---CC------cccccc-eeeehhhcCC----c-----hHHHHHHHHccc
Confidence 334456777888888666554 44 366777 8888888888 5 555555555544
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.42 E-value=3.9e-08 Score=94.66 Aligned_cols=256 Identities=13% Similarity=0.049 Sum_probs=148.5
Q ss_pred CccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccEEE
Q 009796 162 LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSLI 236 (525)
Q Consensus 162 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~L~ 236 (525)
.-+.++|..|.++. +..+..+++||+|+|++|.+..-+ +..+.+.+.|-+|.+.++..++.++ ..++.+|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 35788888888887 456788999999999999873321 3446677888888888876666665 34567777777
Q ss_pred Eeeec--cccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChh----hhhh-------hhcCCCCC
Q 009796 237 LRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQ----EFHP-------LISKFPLL 301 (525)
Q Consensus 237 l~~c~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~-------ll~~~~~L 301 (525)
+.-|. ...+...-.+++|..|.+.++. ......+..+.+++.+++..+.+-.+ +... ..+++...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 77664 1122222357888888888877 22333677788888888866653221 0000 01111111
Q ss_pred cEEEecCccchhHhh--hcCcccceE---ccccccch----hhhcccCCCcceEEEecCCCC----cccccCCCCceEEE
Q 009796 302 EDLSIISLETLERIM--ISSNRLMHL---EVYNCSGL----NRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLF 368 (525)
Q Consensus 302 e~L~L~~c~~l~~~~--~~~~~L~~L---~l~~c~~L----~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l 368 (525)
....+..-. +..+. .....++.+ --..|.-. .......|+|+.++++++.+. .++.....++++.+
T Consensus 227 ~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKR-INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHH-hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 111111100 00000 000011111 00111100 111245688888888888764 35556788888888
Q ss_pred EeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796 369 SNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (525)
Q Consensus 369 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~ 432 (525)
.. +.+.. .-...++++.+|++|+|+.|.++... | . .+.....|..|.|-.|
T Consensus 306 ~~-N~l~~----v~~~~f~~ls~L~tL~L~~N~it~~~--~-----~-aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 306 TR-NKLEF----VSSGMFQGLSGLKTLSLYDNQITTVA--P-----G-AFQTLFSLSTLNLLSN 356 (498)
T ss_pred Cc-chHHH----HHHHhhhccccceeeeecCCeeEEEe--c-----c-cccccceeeeeehccC
Confidence 63 22221 12345788999999999988776542 3 2 4666788888888887
No 30
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.32 E-value=2e-07 Score=64.03 Aligned_cols=37 Identities=43% Similarity=0.862 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhhcc
Q 009796 10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS 46 (525)
Q Consensus 10 is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw~~ 46 (525)
|++||+|++.+||++|+.+|+++++.|||+|+++..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987554
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.4e-07 Score=90.49 Aligned_cols=59 Identities=24% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCCccEEEecCCcCCC---CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeec
Q 009796 160 AKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYC 218 (525)
Q Consensus 160 ~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c 218 (525)
+++|+.|+|+.|++.. ......+++|+.|.|+.|.++-.++..++..||.|+.|.|..|
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 3444444444444332 1111234445555555555444444555555555555555544
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.27 E-value=9e-09 Score=87.91 Aligned_cols=138 Identities=20% Similarity=0.174 Sum_probs=100.0
Q ss_pred CcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-- 225 (525)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-- 225 (525)
....+|+.+..+.+|+.|++.+|.+.. |..++.++.|+.|++.-|+.. .++.=++++|.||.|+|+++..-+..-
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCc
Confidence 345567777788888888888888877 777888888888888877652 234446778888888888875422211
Q ss_pred -cccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCCh
Q 009796 226 -ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND 288 (525)
Q Consensus 226 -i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~ 288 (525)
...+..|+-|.++.+. ..++.-...+.+|+.|.+.++. ...+..++.+..|+.|++.++.++-
T Consensus 122 nff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 122 NFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred chhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence 1124677778887775 2233323367889999999988 7778889999999999999998764
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=2.2e-07 Score=82.39 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCeEEEEEeecCCCCcccCCcccc-CCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 135 GVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 135 ~l~~L~l~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
++++|++.. .. -..+ ..+. .+.+|+.|+|++|.+..-..+..+++|++|++++|.++.-. ..+..+||+|++|
T Consensus 20 ~~~~L~L~~--n~--I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRG--NQ--ISTI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EE
T ss_pred ccccccccc--cc--cccc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEE
Confidence 578888876 11 1112 2333 46899999999999988667788999999999999984311 2233578999999
Q ss_pred EEeecCC--Ccee-ecccCCCccEEEEeeec
Q 009796 214 SFFYCFG--LKRL-RISEAHKLKSLILRFTY 241 (525)
Q Consensus 214 ~L~~c~~--l~~l-~i~~l~~L~~L~l~~c~ 241 (525)
++++|.. +..+ .+..+++|+.|++.+|.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 9998853 2222 23345666666666554
No 34
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.21 E-value=1.3e-06 Score=57.69 Aligned_cols=34 Identities=41% Similarity=0.683 Sum_probs=31.6
Q ss_pred CCHHHHHHHhcCCChHHHHHHhhhchhhhhhhcc
Q 009796 13 LPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS 46 (525)
Q Consensus 13 LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw~~ 46 (525)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=3.9e-07 Score=84.83 Aligned_cols=127 Identities=18% Similarity=0.167 Sum_probs=79.9
Q ss_pred CCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEec
Q 009796 182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS 260 (525)
Q Consensus 182 l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~ 260 (525)
+..|+.|+|++|.++. +...+.-.|.++.|++++|....--.+..+++|+.|++++|. ..+..+...+-|.+.|.++
T Consensus 283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4567777777776632 333344467777777777765433334446777777777775 3444444556677777777
Q ss_pred cccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796 261 FSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 261 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
++.......++.+-+|..|++.+|+|..-.-..-++++|.||.|.|.+.+
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 77633344556666777777777777653333446777777777777654
No 36
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=1.3e-06 Score=94.09 Aligned_cols=148 Identities=19% Similarity=0.182 Sum_probs=103.2
Q ss_pred CCccEEEecCCcCCC---C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796 161 KLLTSLKLFGCKLEQ---P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~---~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 236 (525)
.+|++|+++|...-. + ..+.-||+|++|.+.+..+....+..+..++|+|..|+++++..-.-..++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 578888888753322 1 234558999999999988855568888899999999999987643334566778888887
Q ss_pred Eeeec-cccceE--EEeCCCccEEEecccc-ccce-------eeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEE
Q 009796 237 LRFTY-QELESV--EIAVPSLQQLELSFSR-VPRL-------LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS 305 (525)
Q Consensus 237 l~~c~-~~l~~~--~~~~~~L~~L~l~~~~-~~~~-------~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~ 305 (525)
+.+-. ..-..+ -+++.+|+.|+++... ...+ ..-..+|+|+.|+.++..++++.+..++..-|+|+.+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 76543 111111 1367888888888776 1111 12345889999999988888887888777777777766
Q ss_pred ecC
Q 009796 306 IIS 308 (525)
Q Consensus 306 L~~ 308 (525)
+-+
T Consensus 282 ~~~ 284 (699)
T KOG3665|consen 282 ALD 284 (699)
T ss_pred hhh
Confidence 554
No 37
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.93 E-value=3e-06 Score=89.18 Aligned_cols=190 Identities=24% Similarity=0.276 Sum_probs=104.9
Q ss_pred ccccCCCCccEEEecCC-cCCC------CCCCCCCCcccEEEeceee-echHHHHHHHhCCcCccEEEEeecCCCceeec
Q 009796 155 QTIFSAKLLTSLKLFGC-KLEQ------PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI 226 (525)
Q Consensus 155 ~~l~~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i 226 (525)
.....++.|+.|++++| .... ......+++|+.|+++++. +++..+..+...||+|++|.+.+|..++...+
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 34456788888888873 2211 2344567888888888887 57777888777888888888888876544322
Q ss_pred ----ccCCCccEEEEeeec----cccceEEEeCCCccEEEeccccc-------------------cceeeccCCCCccEE
Q 009796 227 ----SEAHKLKSLILRFTY----QELESVEIAVPSLQQLELSFSRV-------------------PRLLDVAECPHLRKL 279 (525)
Q Consensus 227 ----~~l~~L~~L~l~~c~----~~l~~~~~~~~~L~~L~l~~~~~-------------------~~~~~~~~l~~L~~L 279 (525)
..|++|++|++.+|. ..+..+..+||+|+.|.+..... ........+++++.+
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence 257888888888887 11223333566666655433320 001123445555555
Q ss_pred EeeCCCCChhhhhhhhcCCCCCc-EEEecCccchhHhhhcCcccceEccccccchh-----hhcccCCCcceEEEecCC
Q 009796 280 VLFLPHFNDQEFHPLISKFPLLE-DLSIISLETLERIMISSNRLMHLEVYNCSGLN-----RINVDAPNLVSFDFEDNP 352 (525)
Q Consensus 280 ~L~~~~~~~~~~~~ll~~~~~Le-~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~-----~l~~~~p~L~~l~~~g~~ 352 (525)
.+.++..++......+.+|++|. .+.+.. ..+..++.|.+..|.... .....+.++..+.+.++.
T Consensus 368 ~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~--------~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 368 SLSYCGISDLGLELSLRGCPNLTESLELRL--------CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred hhhhhhccCcchHHHhcCCcccchHHHHHh--------ccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 55555443333334455555551 111111 111226777777776442 111113445555555543
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=1.2e-06 Score=90.71 Aligned_cols=204 Identities=18% Similarity=0.153 Sum_probs=122.1
Q ss_pred ccCCcccceEEEEEeeccccCCchhHHHHHHHHHHcCCeEEEEEeecCCCCcccC-CccccCCCCccEEEecCCcCCCCC
Q 009796 99 CELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQPS 177 (525)
Q Consensus 99 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~ 177 (525)
...+++++.|+.-..-......-..+....+.. ...+.+.+-. .+..... |-.++.+++|++|.|.+|.+....
T Consensus 51 g~~g~~~~~f~a~~s~~ads~vl~qLq~i~d~l--qkt~~lkl~~---~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~ 125 (1096)
T KOG1859|consen 51 GLSGAPVDYFRAYVSDNADSRVLEQLQRILDFL--QKTKVLKLLP---SPARDPTEPISIFPFRSLRVLELRGCDLSTAK 125 (1096)
T ss_pred ccCCCCCceeEEecCCcccchHHHHHHHHHHHH--hhheeeeecc---cCCCCCCCCceeccccceeeEEecCcchhhhh
Confidence 345788888887655322101112223333322 3555555443 1222233 889999999999999999765311
Q ss_pred CC---------------------------------CCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee
Q 009796 178 HC---------------------------------ANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL 224 (525)
Q Consensus 178 ~~---------------------------------~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l 224 (525)
+. ...-.|.+-+.++|+.. .+...+.-.|.|+.|+|++|.....-
T Consensus 126 GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~ 203 (1096)
T KOG1859|consen 126 GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD 203 (1096)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH
Confidence 11 01122444444444431 12223344578888888888765444
Q ss_pred ecccCCCccEEEEeeec-cccceEEE-eCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCc
Q 009796 225 RISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE 302 (525)
Q Consensus 225 ~i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le 302 (525)
.+..|++|+.|+|++|. ..++.+.. .|. |+.|.+++|.......+.++.+|+.|++++|-+.+..-...+..+..|.
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~ 282 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLI 282 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHH
Confidence 55667888999988885 34444433 344 8888888887444557788888888888888777643334455566677
Q ss_pred EEEecCcc
Q 009796 303 DLSIISLE 310 (525)
Q Consensus 303 ~L~L~~c~ 310 (525)
.|.|.+.+
T Consensus 283 ~L~LeGNP 290 (1096)
T KOG1859|consen 283 VLWLEGNP 290 (1096)
T ss_pred HHhhcCCc
Confidence 77777754
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.81 E-value=3.1e-06 Score=81.87 Aligned_cols=190 Identities=18% Similarity=0.169 Sum_probs=113.4
Q ss_pred CCeEEEEEeecCCCCcccCCcccc-CCCCccEEEecCCcCCC--CCCCCCCCcccEEEece-eeech---HH--------
Q 009796 135 GVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDE-VYVND---QM-------- 199 (525)
Q Consensus 135 ~l~~L~l~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~-~~~~~---~~-------- 199 (525)
...+++|+. .....+|...| ..++|+.|+|+.|.++. |..+.++++|..|.+.+ |++++ ..
T Consensus 68 ~tveirLdq----N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQ----NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cceEEEecc----CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 445555544 44567777665 57999999999998876 77888899999888887 66532 11
Q ss_pred ------------HHHHHhCCcCccEEEEeecCC--CceeecccCCCccEEEE----------------------------
Q 009796 200 ------------VQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLIL---------------------------- 237 (525)
Q Consensus 200 ------------l~~ll~~c~~Le~L~L~~c~~--l~~l~i~~l~~L~~L~l---------------------------- 237 (525)
.+..+...++|..|.+..+.. +....+..+..++.+.+
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 123344566676666655432 00000000001111110
Q ss_pred ---------------------------------eeec-cc-cceE-EEeCCCccEEEecccc--ccceeeccCCCCccEE
Q 009796 238 ---------------------------------RFTY-QE-LESV-EIAVPSLQQLELSFSR--VPRLLDVAECPHLRKL 279 (525)
Q Consensus 238 ---------------------------------~~c~-~~-l~~~-~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L 279 (525)
..|. .. .+.. .-.+|+|+.|+++++. ......|.+...++.|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 0110 00 0000 1146899999999988 4455678889999999
Q ss_pred EeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCc---ccceEcccc
Q 009796 280 VLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSN---RLMHLEVYN 329 (525)
Q Consensus 280 ~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~---~L~~L~l~~ 329 (525)
+|..|.+..- -...+.++.+|+.|+|++...-...+..+. .|..|.+-.
T Consensus 304 ~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 304 YLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred hcCcchHHHH-HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 9988887652 345678889999999988654333334443 455555544
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.81 E-value=7.1e-05 Score=83.07 Aligned_cols=186 Identities=20% Similarity=0.147 Sum_probs=113.3
Q ss_pred chhHHHHHHHHHHcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeee-chHH
Q 009796 121 SPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYV-NDQM 199 (525)
Q Consensus 121 ~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~ 199 (525)
...+.-|++......-+. .+.. ........|.. .+-...+...+-++.+........++.|++|-+.++.. -...
T Consensus 487 vRe~al~ias~~~~~~e~-~iv~--~~~~~~~~~~~-~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i 562 (889)
T KOG4658|consen 487 VREMALWIASDFGKQEEN-QIVS--DGVGLSEIPQV-KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI 562 (889)
T ss_pred HHHHHHHHhccccccccc-eEEE--CCcCccccccc-cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc
Confidence 456677776655444444 2211 11122334432 22356677777777665444555677899998888752 1222
Q ss_pred HHHHHhCCcCccEEEEeecCCCceee--cccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc--ccceeeccCCC
Q 009796 200 VQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR--VPRLLDVAECP 274 (525)
Q Consensus 200 l~~ll~~c~~Le~L~L~~c~~l~~l~--i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~ 274 (525)
...++...|.|+.|+|++|..+..++ |+++-+||.|+++++. ..++.-.-++..|.+|++.... ...+.....++
T Consensus 563 s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 34457788999999999988877765 6678889999988875 2222222356678888888776 23344455689
Q ss_pred CccEEEeeCCCCCh-hhhhhhhcCCCCCcEEEecCcc
Q 009796 275 HLRKLVLFLPHFND-QEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 275 ~L~~L~L~~~~~~~-~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
+|++|.+....... .....-+.++.+|+.+.+..+.
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 99999996654222 1223334566666666665443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.80 E-value=8e-06 Score=76.27 Aligned_cols=130 Identities=15% Similarity=0.040 Sum_probs=64.3
Q ss_pred eccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEE
Q 009796 269 DVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDF 348 (525)
Q Consensus 269 ~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~ 348 (525)
.+.....|+.++|++|.|+. +.+-..-.|.++.|+++.....+.- +| ...++|+.|++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~----------------nL----a~L~~L~~LDL 336 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQ----------------NL----AELPQLQLLDL 336 (490)
T ss_pred ecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeeh----------------hh----hhcccceEeec
Confidence 34445567777777777765 3444555677777777764321110 11 12234444444
Q ss_pred ecCCCCccc-c--cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccc
Q 009796 349 EDNPIPIVS-T--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESL 425 (525)
Q Consensus 349 ~g~~~~~~~-~--~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~ 425 (525)
+++...... + .+-+.+.+.+.. + . .+.+ .-+..+-+|..|++..|.++..- .+..++++|.|.
T Consensus 337 S~N~Ls~~~Gwh~KLGNIKtL~La~-N----~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ld-------eV~~IG~LPCLE 402 (490)
T KOG1259|consen 337 SGNLLAECVGWHLKLGNIKTLKLAQ-N----K-IETL-SGLRKLYSLVNLDLSSNQIEELD-------EVNHIGNLPCLE 402 (490)
T ss_pred ccchhHhhhhhHhhhcCEeeeehhh-h----h-Hhhh-hhhHhhhhheeccccccchhhHH-------HhcccccccHHH
Confidence 443322100 0 233445555542 1 0 0111 11344556666666665544321 112577888888
Q ss_pred eEEEEEeee
Q 009796 426 SLFMESFSL 434 (525)
Q Consensus 426 ~L~L~~~~~ 434 (525)
+|.|.+|++
T Consensus 403 ~l~L~~NPl 411 (490)
T KOG1259|consen 403 TLRLTGNPL 411 (490)
T ss_pred HHhhcCCCc
Confidence 888888744
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=3e-05 Score=72.53 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=54.5
Q ss_pred cCCCCccEEEecCCcCCC----CCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCC---ceeecccC
Q 009796 158 FSAKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGL---KRLRISEA 229 (525)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l---~~l~i~~l 229 (525)
++..-+..|.+.+|.+.. ......+..++.|+|.+|.+ +=..+..++.++|.|+.|+|++|..- ..++.. +
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p-~ 120 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP-L 120 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc-c
Confidence 333445567777777654 23345678889999999988 44567788889999999999887642 222211 2
Q ss_pred CCccEEEEeeec
Q 009796 230 HKLKSLILRFTY 241 (525)
Q Consensus 230 ~~L~~L~l~~c~ 241 (525)
.+|++|.+.+.+
T Consensus 121 ~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 121 KNLRVLVLNGTG 132 (418)
T ss_pred cceEEEEEcCCC
Confidence 466666665553
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.53 E-value=4.1e-05 Score=55.43 Aligned_cols=58 Identities=24% Similarity=0.216 Sum_probs=39.0
Q ss_pred CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796 161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF 219 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~ 219 (525)
++|++|++++|.+.. +..+.++++|++|++++|.+..- -+..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 467788888887766 34567788888888887776311 12346677777777777664
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.43 E-value=7.3e-05 Score=76.62 Aligned_cols=147 Identities=21% Similarity=0.245 Sum_probs=83.6
Q ss_pred cCCCCccEEEecCCcCCC-CCCCCCCC-cccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecc-cCCCccE
Q 009796 158 FSAKLLTSLKLFGCKLEQ-PSHCANLQ-SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS-EAHKLKS 234 (525)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~-~l~~L~~ 234 (525)
...+.++.|.+.++.+.. ++....++ +|+.|+++++.+.. ++.-+..+|+|+.|++++|....-.... ..++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 334567777777776665 44445553 77777777776532 2233566777777777776542222221 3467777
Q ss_pred EEEeeeccccceEEE---eCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796 235 LILRFTYQELESVEI---AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 235 L~l~~c~~~l~~~~~---~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
|+++++. +..+.. ....|++|.++++. ...+..+..+.++..+.+..+.+.. +...+.++++++.|+++++.
T Consensus 191 L~ls~N~--i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 191 LDLSGNK--ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred eeccCCc--cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccccc
Confidence 7777764 333322 22337777777663 4444455666666666665555544 23445566667777776643
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.40 E-value=2.6e-05 Score=86.43 Aligned_cols=199 Identities=23% Similarity=0.243 Sum_probs=109.7
Q ss_pred ccCCcccc-CCCCccEEEecCCcC-CC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-c
Q 009796 151 NALPQTIF-SAKLLTSLKLFGCKL-EQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-I 226 (525)
Q Consensus 151 ~~lp~~l~-~~~~L~~L~L~~~~l-~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-i 226 (525)
..++..++ .++.|++|+|++|.- .. |..++.+-+||+|+|+++.+. .++.-+.++..|.+|++..+..+...+ +
T Consensus 560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccch
Confidence 34444434 478888888888743 33 777788888888888888764 355566777788888888776544432 2
Q ss_pred c-cCCCccEEEEeeeccccceEE----EeCCCccEEEeccccccceeeccCCCCccE----EEeeCCCCChhhhhhhhcC
Q 009796 227 S-EAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSRVPRLLDVAECPHLRK----LVLFLPHFNDQEFHPLISK 297 (525)
Q Consensus 227 ~-~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~----L~L~~~~~~~~~~~~ll~~ 297 (525)
. .+++|++|.+..-........ ....+|+.|............+..++.|.+ +.+.++.. ......+..
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~ 715 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK--RTLISSLGS 715 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc--ceeeccccc
Confidence 2 367888887765430000000 133444444443332211112223333332 22212111 112334566
Q ss_pred CCCCcEEEecCccchhHhhhc---------CcccceEccccccchhhhc--ccCCCcceEEEecCCC
Q 009796 298 FPLLEDLSIISLETLERIMIS---------SNRLMHLEVYNCSGLNRIN--VDAPNLVSFDFEDNPI 353 (525)
Q Consensus 298 ~~~Le~L~L~~c~~l~~~~~~---------~~~L~~L~l~~c~~L~~l~--~~~p~L~~l~~~g~~~ 353 (525)
+.+|+.|.+.+|...+..... ++++..+.+..|..++.+. .-+|+|+++.+.++..
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence 778888888887653321111 3455666666666554433 4578888888877654
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.35 E-value=0.0002 Score=51.83 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=40.8
Q ss_pred CCccEEEecccc-cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796 252 PSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 252 ~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
|+|++|++++|. .. .+..|.++++|+.|+++++.++.- ....+.++++|++|+++++.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 566777777776 22 234677888888888888887652 34567888888888888753
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.29 E-value=0.00011 Score=75.22 Aligned_cols=154 Identities=24% Similarity=0.205 Sum_probs=83.9
Q ss_pred CcccCCccccCCC-CccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeec
Q 009796 149 SVNALPQTIFSAK-LLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI 226 (525)
Q Consensus 149 ~~~~lp~~l~~~~-~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i 226 (525)
....+|......+ +|+.|+++++.+.. +.....+++|+.|++++|.+.+ +....+..+.|+.|+++++.. ..++.
T Consensus 127 ~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i-~~l~~ 203 (394)
T COG4886 127 NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKI-SDLPP 203 (394)
T ss_pred ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCcc-ccCch
Confidence 3445555555553 67777777766665 3456667777777777666532 333333566777777766643 22222
Q ss_pred c--cCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCc
Q 009796 227 S--EAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE 302 (525)
Q Consensus 227 ~--~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le 302 (525)
. ....|++|.+.++. ...........++..+.+.++. ...+..++.+++++.|+++.+.++.. .. +....+|+
T Consensus 204 ~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i--~~-~~~~~~l~ 280 (394)
T COG4886 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI--SS-LGSLTNLR 280 (394)
T ss_pred hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc--cc-ccccCccC
Confidence 1 22336666666663 1111112244555555555444 22244566666677777776666652 22 55666666
Q ss_pred EEEecC
Q 009796 303 DLSIIS 308 (525)
Q Consensus 303 ~L~L~~ 308 (525)
.|++++
T Consensus 281 ~L~~s~ 286 (394)
T COG4886 281 ELDLSG 286 (394)
T ss_pred EEeccC
Confidence 666665
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.29 E-value=5.4e-05 Score=79.59 Aligned_cols=132 Identities=22% Similarity=0.300 Sum_probs=67.2
Q ss_pred CCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeec-CCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEe
Q 009796 182 LQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYC-FGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLEL 259 (525)
Q Consensus 182 l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c-~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l 259 (525)
+++|+.|.+.++.. ++..+..+...|++|++|++++| ........ ....+...+++|+.+++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------~~~~~~~~~~~L~~l~l 250 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL----------------LLLLLLSICRKLKSLDL 250 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh----------------HhhhhhhhcCCcCccch
Confidence 56666666665543 44445555556666666666552 11110000 00011123444555555
Q ss_pred ccccc----cceeeccCCCCccEEEeeCCC-CChhhhhhhhcCCCCCcEEEecCccchhH-----hhhcCcccceEcccc
Q 009796 260 SFSRV----PRLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLEDLSIISLETLER-----IMISSNRLMHLEVYN 329 (525)
Q Consensus 260 ~~~~~----~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~~~~Le~L~L~~c~~l~~-----~~~~~~~L~~L~l~~ 329 (525)
+.+.. ........|++|+.|.+..+. +++.++..+...+++|++|+|++|..+++ +...|++|+.|.+..
T Consensus 251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 44431 011111236677777765555 67777777788888888888888766432 233355555544433
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=0.00022 Score=77.27 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=17.1
Q ss_pred CcccEEEeceeee-chHHHHHHHhCCcCccEEEEee
Q 009796 183 QSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFY 217 (525)
Q Consensus 183 ~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~ 217 (525)
.+|++|++++... ..+.+.++-.-+|.|+.|.+.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~ 157 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG 157 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC
Confidence 3455555555443 3333444444455555555544
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.07 E-value=0.00079 Score=62.46 Aligned_cols=120 Identities=15% Similarity=0.087 Sum_probs=63.4
Q ss_pred CCCCcccEEEeceeee---chHHHHHHHhCCcCccEEEEeecCCCcee---ecccCCCccEEEEeeeccccceEEEeCCC
Q 009796 180 ANLQSLKKLSLDEVYV---NDQMVQSLVRECRVLEDLSFFYCFGLKRL---RISEAHKLKSLILRFTYQELESVEIAVPS 253 (525)
Q Consensus 180 ~~l~~L~~L~L~~~~~---~~~~l~~ll~~c~~Le~L~L~~c~~l~~l---~i~~l~~L~~L~l~~c~~~l~~~~~~~~~ 253 (525)
..||+|+..+||.|.| ....+..++++.+.|++|.+++|.. ..+ .|. ..|..| ..-+-..+.|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rig--kal~~l-------a~nKKaa~kp~ 158 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIG--KALFHL-------AYNKKAADKPK 158 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHH--HHHHHH-------HHHhhhccCCC
Confidence 4566666666666655 2333445556666666666655532 110 011 001100 00011224677
Q ss_pred ccEEEecccc---ccc---eeeccCCCCccEEEeeCCCCChhhhhhh----hcCCCCCcEEEecCc
Q 009796 254 LQQLELSFSR---VPR---LLDVAECPHLRKLVLFLPHFNDQEFHPL----ISKFPLLEDLSIISL 309 (525)
Q Consensus 254 L~~L~l~~~~---~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~~l----l~~~~~Le~L~L~~c 309 (525)
|+.+....+. ++. ...+..-.+|+.+.+..|.|....+..+ +..+.+|+.|+|...
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 7777776666 111 1123333578888888888876544332 456788888888874
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00037 Score=65.42 Aligned_cols=176 Identities=17% Similarity=0.083 Sum_probs=120.0
Q ss_pred cCCeEEEEEeecCCC-CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKN-SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~-~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
..|+++++.. +.. .-.++...+..++.|+.|+|+.|.+.. ........+|++|.|-+...+=.....++...|.+
T Consensus 71 ~~v~elDL~~--N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTG--NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhccc--chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4788888865 211 112233344568899999999998876 22335677999999988877545567788899999
Q ss_pred cEEEEeecCC----Cceeecc-cCCCccEEEEeeec----cccceEEEeCCCccEEEecccc---ccceeeccCCCCccE
Q 009796 211 EDLSFFYCFG----LKRLRIS-EAHKLKSLILRFTY----QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLRK 278 (525)
Q Consensus 211 e~L~L~~c~~----l~~l~i~-~l~~L~~L~l~~c~----~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~ 278 (525)
++|.++.|.. +..-.+. --+.+++|+...|. .....+.--.|++.++-+..|+ ......+..+|.+--
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999988742 1111111 01678888888886 1222333347899999888886 334456777888888
Q ss_pred EEeeCCCCChhhhhhhhcCCCCCcEEEecCccc
Q 009796 279 LVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (525)
Q Consensus 279 L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~ 311 (525)
|.|+.+++..=.-...+.+++.|..|.+...+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 888888876533344577888888888887654
No 52
>PLN03150 hypothetical protein; Provisional
Probab=96.99 E-value=0.00084 Score=72.71 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=74.8
Q ss_pred CccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--ecccCCCccEEEE
Q 009796 162 LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLIL 237 (525)
Q Consensus 162 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--~i~~l~~L~~L~l 237 (525)
.++.|+|++|.+.+ +..+..+++|+.|+|++|.+.. .++..+..+++|+.|+|++|.....+ .+.++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 37889999998887 7778899999999999998743 35666889999999999999754433 3557899999999
Q ss_pred eeec--cccce-EEEeCCCccEEEecccc
Q 009796 238 RFTY--QELES-VEIAVPSLQQLELSFSR 263 (525)
Q Consensus 238 ~~c~--~~l~~-~~~~~~~L~~L~l~~~~ 263 (525)
++|. ..++. +.....++..+++.++.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 9886 12221 11113456677887775
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.92 E-value=0.00084 Score=44.76 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=19.7
Q ss_pred CccEEEecCCcCCC-CCCCCCCCcccEEEeceeee
Q 009796 162 LLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV 195 (525)
Q Consensus 162 ~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~ 195 (525)
+|++|++++|.+.. ++.+.+|++|+.|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 56666666666665 44456666666666666655
No 54
>PLN03150 hypothetical protein; Provisional
Probab=96.92 E-value=0.00092 Score=72.39 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=72.8
Q ss_pred cccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--cccCCCccEEEEeeec--cccceEEEeCCCccEEEe
Q 009796 184 SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY--QELESVEIAVPSLQQLEL 259 (525)
Q Consensus 184 ~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--i~~l~~L~~L~l~~c~--~~l~~~~~~~~~L~~L~l 259 (525)
.++.|+|+++.+.. .++..+..+++|+.|+|++|.....++ +..+++|+.|++++|. ..++.....+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 47889999988743 345568889999999999987544443 5678999999999997 223333346899999999
Q ss_pred cccc--ccceeeccCC-CCccEEEeeCCC
Q 009796 260 SFSR--VPRLLDVAEC-PHLRKLVLFLPH 285 (525)
Q Consensus 260 ~~~~--~~~~~~~~~l-~~L~~L~L~~~~ 285 (525)
++|. +..+..++.. .++..+++.+|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 9987 4555555543 356677777664
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00023 Score=65.73 Aligned_cols=90 Identities=26% Similarity=0.173 Sum_probs=64.3
Q ss_pred cCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCC--Cceee-cc
Q 009796 152 ALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFG--LKRLR-IS 227 (525)
Q Consensus 152 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~--l~~l~-i~ 227 (525)
.+....-....|+.|++.++.++....+-.+|+|++|.++.|.. ....+.-++..||+|++|++++|.. +..+. +.
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred CcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 34444445678888888888887756667789999999999944 2334666677889999999999864 22222 23
Q ss_pred cCCCccEEEEeeec
Q 009796 228 EAHKLKSLILRFTY 241 (525)
Q Consensus 228 ~l~~L~~L~l~~c~ 241 (525)
.+++|.+|++..|.
T Consensus 114 ~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 114 ELENLKSLDLFNCS 127 (260)
T ss_pred hhcchhhhhcccCC
Confidence 45778888888775
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.00028 Score=65.16 Aligned_cols=35 Identities=37% Similarity=0.408 Sum_probs=16.1
Q ss_pred CCCccEEEEeeec----cccceEEEeCCCccEEEecccc
Q 009796 229 AHKLKSLILRFTY----QELESVEIAVPSLQQLELSFSR 263 (525)
Q Consensus 229 l~~L~~L~l~~c~----~~l~~~~~~~~~L~~L~l~~~~ 263 (525)
+|+|+.|.++.++ .++..+...||+|++++++++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 4555555555542 2222223344555555555554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.68 E-value=0.0049 Score=61.87 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=5.8
Q ss_pred CccEEEEeecCC
Q 009796 209 VLEDLSFFYCFG 220 (525)
Q Consensus 209 ~Le~L~L~~c~~ 220 (525)
+|++|.+++|..
T Consensus 95 nLe~L~Ls~Cs~ 106 (426)
T PRK15386 95 GLEKLTVCHCPE 106 (426)
T ss_pred hhhheEccCccc
Confidence 445555554433
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.29 E-value=8.2e-05 Score=77.55 Aligned_cols=118 Identities=21% Similarity=0.167 Sum_probs=69.5
Q ss_pred ccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC--CceeecccCCCccEEEEee
Q 009796 163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRF 239 (525)
Q Consensus 163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~--l~~l~i~~l~~L~~L~l~~ 239 (525)
|...+.+.|.+.. .....-++.|+.|+|++|++... . .+..|+.|++|+|++|.. +..+...+|. |+.|.+.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 3444444454443 33344567788888888877432 2 356678888888887743 4445555544 78888877
Q ss_pred eccccceEE--EeCCCccEEEecccc---ccceeeccCCCCccEEEeeCCCC
Q 009796 240 TYQELESVE--IAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHF 286 (525)
Q Consensus 240 c~~~l~~~~--~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~L~~~~~ 286 (525)
|. +..+. .++.+|+.|++++|. ......+..+..|+.|.|.+|.+
T Consensus 242 N~--l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NA--LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cH--HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 74 33221 156677777777776 11122334455666677766643
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.17 E-value=0.0062 Score=54.27 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecC
Q 009796 159 SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCF 219 (525)
Q Consensus 159 ~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~ 219 (525)
..+.|..|.|.+|+++. +.....+|+|+.|.|.+|.+ .-+++.. +..||.|++|.+-+|.
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 34566666666666655 33344456666666666655 2222333 3455666666655553
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.10 E-value=0.0073 Score=40.20 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=15.2
Q ss_pred CccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796 275 HLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL 309 (525)
Q Consensus 275 ~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c 309 (525)
+|+.|+++++.+++ ++..+.++++|+.|+++++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 44555555555543 3333445555555555554
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.09 E-value=0.016 Score=58.36 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=13.9
Q ss_pred CccEEEEeecCCCceeecccCCCccEEEEeee
Q 009796 209 VLEDLSFFYCFGLKRLRISEAHKLKSLILRFT 240 (525)
Q Consensus 209 ~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c 240 (525)
+|++|.+.+|..+..++-.-.++|+.|++.+|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence 35555555554443332110134555555554
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.00017 Score=66.89 Aligned_cols=96 Identities=27% Similarity=0.253 Sum_probs=47.9
Q ss_pred CCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec-cccceEE--EeCCCccEEE
Q 009796 182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVE--IAVPSLQQLE 258 (525)
Q Consensus 182 l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~--~~~~~L~~L~ 258 (525)
+.+.++|++++|.++|- .+...+|.||.|.|+-|..-+--++..|++|+.|.+..|. ..+.++. .++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 33445555555555432 2234455666666655543222223345556666555543 2222222 2567777777
Q ss_pred ecccc--ccc-----eeeccCCCCccEEE
Q 009796 259 LSFSR--VPR-----LLDVAECPHLRKLV 280 (525)
Q Consensus 259 l~~~~--~~~-----~~~~~~l~~L~~L~ 280 (525)
+..++ +.. ...+.-+|+|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 76665 111 12345567777665
No 63
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.79 E-value=0.00033 Score=71.24 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=68.8
Q ss_pred cCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce-eecccC
Q 009796 152 ALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRISEA 229 (525)
Q Consensus 152 ~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~-l~i~~l 229 (525)
.+|..+.+...|+.|+|+.|.+.. |..+..|| |+.|-+++|.++. ++.-++..+.|..|+.+.|....- -.+.++
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~--lp~~ig~~~tl~~ld~s~nei~slpsql~~l 188 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS--LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL 188 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc--CCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence 345555555666666666665555 33333333 6666666665521 222233455666666666543221 113345
Q ss_pred CCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCCh
Q 009796 230 HKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND 288 (525)
Q Consensus 230 ~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~ 288 (525)
.+|+.|.+..+. ..+..- +..-.|..|+++.|. ..+|+.|..+..|+.|.|.+|.+..
T Consensus 189 ~slr~l~vrRn~l~~lp~E-l~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPEE-LCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHHhhhhhhhCCHH-HhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 566666666554 111111 113346666666666 5566666666666666666666554
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.74 E-value=0.026 Score=50.39 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=46.8
Q ss_pred CCccEEEecCCcCCCCCCCCCCCcccEEEeceeeec--hHHHHHHHhCCcCccEEEEeecCC--Ccee-ecccCCCccEE
Q 009796 161 KLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVN--DQMVQSLVRECRVLEDLSFFYCFG--LKRL-RISEAHKLKSL 235 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~--~~~l~~ll~~c~~Le~L~L~~c~~--l~~l-~i~~l~~L~~L 235 (525)
.+...++|+.|.+.....+..+++|.+|.|.+|+++ +..+. .-.|+|..|.|.+|+. +..+ +..+||+|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 355677777776655456667888888999888873 22232 3357777777777653 1111 22344555555
Q ss_pred EEeeec
Q 009796 236 ILRFTY 241 (525)
Q Consensus 236 ~l~~c~ 241 (525)
.+-++.
T Consensus 119 tll~Np 124 (233)
T KOG1644|consen 119 TLLGNP 124 (233)
T ss_pred eecCCc
Confidence 555443
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.63 E-value=0.0017 Score=66.91 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=25.2
Q ss_pred CCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796 161 KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF 219 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~ 219 (525)
..+..+.+..+.+.. ......+.+|+.|++.++.+.. +...+.++++|++|++++|.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~ 129 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNK 129 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhh--cccchhhhhcchheeccccc
Confidence 333344444443332 2234445555555555555411 12223445555555555554
No 66
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.48 E-value=0.00096 Score=68.03 Aligned_cols=152 Identities=18% Similarity=0.085 Sum_probs=60.4
Q ss_pred cCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCC-ceeecccC
Q 009796 152 ALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGL-KRLRISEA 229 (525)
Q Consensus 152 ~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l-~~l~i~~l 229 (525)
.+|..+..|..|..+.|..|.+.. +....++..|+.|+|+.|++.. ++.-+..|| |+.|-+++|... -...+..+
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLL 165 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccccCCcccccc
Confidence 344444444444555554444433 4444445555555555444311 111122222 444444444321 01112233
Q ss_pred CCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEec
Q 009796 230 HKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (525)
Q Consensus 230 ~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~ 307 (525)
++|..|+.+.|. ..+..-.....+|+.|.+..+. ...+..+.. -.|..|++++|.++. ++--+.++..|++|.|.
T Consensus 166 ~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLE 242 (722)
T ss_pred hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceee--cchhhhhhhhheeeeec
Confidence 445555554443 1111111233444444444444 333333332 224445555554443 23334444455555554
Q ss_pred Cc
Q 009796 308 SL 309 (525)
Q Consensus 308 ~c 309 (525)
+.
T Consensus 243 nN 244 (722)
T KOG0532|consen 243 NN 244 (722)
T ss_pred cC
Confidence 43
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.00081 Score=62.60 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=51.8
Q ss_pred CCccEEEEeeeccccceEEE--eCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEec
Q 009796 230 HKLKSLILRFTYQELESVEI--AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (525)
Q Consensus 230 ~~L~~L~l~~c~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~ 307 (525)
.+.+.|+.++| ++..|.+ .+|.||.|.|+-+.......+..|++|+.|+|.-|.|.+-.-...+.++|+|+.|.|.
T Consensus 19 ~~vkKLNcwg~--~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGC--GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCC--CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34555555555 3443332 5677777777777755555677888888888887777764334557788888888887
Q ss_pred Cc
Q 009796 308 SL 309 (525)
Q Consensus 308 ~c 309 (525)
..
T Consensus 97 EN 98 (388)
T KOG2123|consen 97 EN 98 (388)
T ss_pred cC
Confidence 63
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.33 E-value=0.01 Score=55.23 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=103.9
Q ss_pred CchhHHHHHHHHHHc--CCeEEEEEeecCCCCcccC-------CccccCCCCccEEEecCCcCCC--CC----CCCCCCc
Q 009796 120 SSPLFDKWVELAMEN--GVKELDFEVITDKNSVNAL-------PQTIFSAKLLTSLKLFGCKLEQ--PS----HCANLQS 184 (525)
Q Consensus 120 ~~~~~~~wl~~~~~~--~l~~L~l~~~~~~~~~~~l-------p~~l~~~~~L~~L~L~~~~l~~--~~----~~~~l~~ 184 (525)
.+.....|++..++. +++..+++..........+ ...+..|+.|+..+||.|.+.. ++ .++.-..
T Consensus 42 igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~ 121 (388)
T COG5238 42 IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTD 121 (388)
T ss_pred ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCC
Confidence 366778888877653 5666665442222222223 3355689999999999998865 22 3466789
Q ss_pred ccEEEeceeeec---hHHHH----HH-----HhCCcCccEEEEeecCCCce------eecccCCCccEEEEeeeccccce
Q 009796 185 LKKLSLDEVYVN---DQMVQ----SL-----VRECRVLEDLSFFYCFGLKR------LRISEAHKLKSLILRFTYQELES 246 (525)
Q Consensus 185 L~~L~L~~~~~~---~~~l~----~l-----l~~c~~Le~L~L~~c~~l~~------l~i~~l~~L~~L~l~~c~~~l~~ 246 (525)
|++|.|++|... +.-+. ++ +.+-|.|+......|..-.. ..+.+-.+|+.+.|..|. +..
T Consensus 122 l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg--Irp 199 (388)
T COG5238 122 LVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG--IRP 199 (388)
T ss_pred ceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC--cCc
Confidence 999999999762 22222 21 34567777777766643111 011111466666666653 111
Q ss_pred EEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChh---hhhhhhcCCCCCcEEEecCcc
Q 009796 247 VEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQ---EFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~---~~~~ll~~~~~Le~L~L~~c~ 310 (525)
-.+ +.| ....+..+.+|+.|+|..|.++-. .+...+..-+.|+.|.+..|-
T Consensus 200 egv-----~~L--------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 200 EGV-----TML--------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred chh-----HHH--------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 000 000 111334567888888888877653 244556677778888888874
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.15 E-value=0.0026 Score=65.53 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=65.4
Q ss_pred cccCCCCccEEEecCCcCCCCCC-CCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCCceeecccCCCcc
Q 009796 156 TIFSAKLLTSLKLFGCKLEQPSH-CANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLK 233 (525)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~~~~-~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~ 233 (525)
.+..+++|..|++.++.+..... ...+++|++|+|++|.+ +-.. +..++.|+.|++.+|..-..-....+++|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG----LSTLTLLKELNLSGNLISDISGLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc----hhhccchhhheeccCcchhccCCccchhhh
Confidence 35567889999999998887444 77899999999999988 3323 344566888888888653332333356677
Q ss_pred EEEEeeec-cccceE-EEeCCCccEEEecccc
Q 009796 234 SLILRFTY-QELESV-EIAVPSLQQLELSFSR 263 (525)
Q Consensus 234 ~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~ 263 (525)
.+++++|. ..+... ...+.+|+.+.+.++.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 77776665 111110 1234455555555544
No 70
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=94.82 E-value=0.038 Score=32.02 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=22.1
Q ss_pred cccEEEeceeee-chHHHHHHHhCCc
Q 009796 184 SLKKLSLDEVYV-NDQMVQSLVRECR 208 (525)
Q Consensus 184 ~L~~L~L~~~~~-~~~~l~~ll~~c~ 208 (525)
+||+|+|..+.+ ++..+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 6668999999998
No 71
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.68 E-value=0.016 Score=55.32 Aligned_cols=38 Identities=24% Similarity=0.597 Sum_probs=35.6
Q ss_pred CCccCCCCC----HHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796 6 DADHISDLP----TFIIHHIMSFLSPKDVVRTGILSTTWRKF 43 (525)
Q Consensus 6 ~~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vSrrWr~l 43 (525)
..|.|..|| |+|-..|||||+..+++.|-.|||+|+++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 468899999 99999999999999999999999999964
No 72
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.40 E-value=0.025 Score=53.65 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=30.9
Q ss_pred ccCCCCCHHHHHHHhcC-----CChHHHHHHhhhchhhhhh
Q 009796 8 DHISDLPTFIIHHIMSF-----LSPKDVVRTGILSTTWRKF 43 (525)
Q Consensus 8 D~is~LPd~iL~~Ils~-----L~~~d~~r~s~vSrrWr~l 43 (525)
+.|+.||||||..||.. ++.+++.++|+|||.|+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 45789999999999964 5679999999999999853
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=0.012 Score=52.42 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=56.5
Q ss_pred cCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCCceeec--
Q 009796 152 ALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRI-- 226 (525)
Q Consensus 152 ~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i-- 226 (525)
.+|..-..--.++.++-+++.+.. ...+.+++.++.|.+.+|.. ++..+..+-.-.|+|++|+|++|..++.-.+
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 444332222345666666665543 44566778888888888876 7777777777788888888888887665432
Q ss_pred -ccCCCccEEEEe
Q 009796 227 -SEAHKLKSLILR 238 (525)
Q Consensus 227 -~~l~~L~~L~l~ 238 (525)
..+++|+.|.+.
T Consensus 172 L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 172 LLKLKNLRRLHLY 184 (221)
T ss_pred HHHhhhhHHHHhc
Confidence 244666666555
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.027 Score=50.33 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=45.9
Q ss_pred eccCCCCccEEEeeCCCCCh-hhhhhhhcCCCCCcEEEecCccchhHhhhc----CcccceEccccccch
Q 009796 269 DVAECPHLRKLVLFLPHFND-QEFHPLISKFPLLEDLSIISLETLERIMIS----SNRLMHLEVYNCSGL 333 (525)
Q Consensus 269 ~~~~l~~L~~L~L~~~~~~~-~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~----~~~L~~L~l~~c~~L 333 (525)
.+.+++.++.|.+..+..-+ ..+..+-.-.++|+.|+|++|+.|++-+.. +++|+.|.+.+.+..
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 45667777778886665444 344555567889999999999988887665 467888877776543
No 75
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.59 E-value=0.086 Score=52.47 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHhcCCC-hHHHHHHhhhchhhhhhhc
Q 009796 10 ISDLPTFIIHHIMSFLS-PKDVVRTGILSTTWRKFQT 45 (525)
Q Consensus 10 is~LPd~iL~~Ils~L~-~~d~~r~s~vSrrWr~lw~ 45 (525)
-++||+|+|..|..+|+ .-|++|.+.|||.||..-.
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 57899999999999997 6799999999999998643
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.72 E-value=0.22 Score=41.70 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=6.8
Q ss_pred eccCCCCccEEEee
Q 009796 269 DVAECPHLRKLVLF 282 (525)
Q Consensus 269 ~~~~l~~L~~L~L~ 282 (525)
.+..+++|+.+.+.
T Consensus 76 ~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 76 AFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTT-TTECEEEET
T ss_pred cccccccccccccC
Confidence 34445555555553
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.58 E-value=0.24 Score=41.40 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEe
Q 009796 159 SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFF 216 (525)
Q Consensus 159 ~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~ 216 (525)
.|.+|+.+.+... +.. ...+.++++|+.+.+...-..-. ...+.+|+.|+.+.+.
T Consensus 10 ~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETST---EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEET
T ss_pred CCCCCCEEEECCC-eeEeChhhcccccccccccccccccccc--eeeeeccccccccccc
Confidence 4567777776642 222 34455666677666654311100 1224556566666664
No 78
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=87.00 E-value=0.11 Score=35.82 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCCccccccccCCCccccccccCCCCCcccc
Q 009796 489 GCQIKCWRHYLKGINTESFDPLQESSEVNYA 519 (525)
Q Consensus 489 ~~~~~~~~~~Lk~v~i~~f~~~~~~~~~~~~ 519 (525)
...++|...+||.|++.||.+.+ .+++|.
T Consensus 6 ~~~p~Cl~s~Lk~v~~~~f~g~~--~e~~f~ 34 (51)
T PF08387_consen 6 SSVPECLLSHLKFVEIKGFRGEE--NELEFA 34 (51)
T ss_pred CCCccchhheeEEEEEEeeeCcH--HHHHHH
Confidence 34689999999999999999998 777775
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.98 E-value=0.33 Score=51.34 Aligned_cols=39 Identities=31% Similarity=0.558 Sum_probs=36.5
Q ss_pred CCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796 5 VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF 43 (525)
Q Consensus 5 ~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~l 43 (525)
...|.|+.||-++..+||++|+.++++++++||+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 457999999999999999999999999999999999965
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.85 E-value=0.69 Score=25.96 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=13.3
Q ss_pred CCcccEEEeceeeechHHHHHH
Q 009796 182 LQSLKKLSLDEVYVNDQMVQSL 203 (525)
Q Consensus 182 l~~L~~L~L~~~~~~~~~l~~l 203 (525)
+++|++|+|++|.+++..+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4678888888888866655543
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.69 E-value=0.59 Score=25.70 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=8.2
Q ss_pred CccEEEecCCcCCC
Q 009796 162 LLTSLKLFGCKLEQ 175 (525)
Q Consensus 162 ~L~~L~L~~~~l~~ 175 (525)
+|++|+|++|.++.
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 35666666665554
No 82
>PF13013 F-box-like_2: F-box-like domain
Probab=82.73 E-value=1.1 Score=36.31 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=27.0
Q ss_pred cCCCCCHHHHHHHhcCCChHHHHHHhhhch
Q 009796 9 HISDLPTFIIHHIMSFLSPKDVVRTGILST 38 (525)
Q Consensus 9 ~is~LPd~iL~~Ils~L~~~d~~r~s~vSr 38 (525)
.+.+||+||+..|+.+-...+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 378899999999999999999988887777
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.61 E-value=1.1 Score=25.76 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=11.3
Q ss_pred CCcccEEEeceeee-chHHHHHH
Q 009796 182 LQSLKKLSLDEVYV-NDQMVQSL 203 (525)
Q Consensus 182 l~~L~~L~L~~~~~-~~~~l~~l 203 (525)
|++|++|+|++|.. ++.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555543 55555443
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.19 E-value=0.95 Score=26.02 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=12.3
Q ss_pred CCCCcEEEecCccchhHhh
Q 009796 298 FPLLEDLSIISLETLERIM 316 (525)
Q Consensus 298 ~~~Le~L~L~~c~~l~~~~ 316 (525)
|++|++|+|++|..+++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4667777777776665543
No 85
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=80.75 E-value=0.37 Score=40.61 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=28.3
Q ss_pred CCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC
Q 009796 161 KLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG 220 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~ 220 (525)
..|+..+|++|.+.. | .....+|.++.|+|++|.+.+ ++.-++..|.|+.|++..|..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCcc
Confidence 344445555555544 2 222344555556665555432 222355555555555555543
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=77.13 E-value=2.3 Score=21.73 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=5.7
Q ss_pred CccEEEecCCcCC
Q 009796 162 LLTSLKLFGCKLE 174 (525)
Q Consensus 162 ~L~~L~L~~~~l~ 174 (525)
+|+.|+|++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666665543
No 87
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=76.44 E-value=0.17 Score=42.57 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=29.4
Q ss_pred CccEEEecCCcCCC----CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796 162 LLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF 219 (525)
Q Consensus 162 ~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~ 219 (525)
.+..++|++|.+.. .........|+..+|++|.+.+ ..+++...+|.+++|++.+|.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~ne 88 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNE 88 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhh
Confidence 45566667765442 2333445556666666665521 123444455556666665553
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.04 E-value=4.6 Score=23.66 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=14.7
Q ss_pred CcccEEEeceeeechHHHHHH
Q 009796 183 QSLKKLSLDEVYVNDQMVQSL 203 (525)
Q Consensus 183 ~~L~~L~L~~~~~~~~~l~~l 203 (525)
++|++|+|++|.+++.....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 568888888888866555443
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=63.39 E-value=0.17 Score=52.73 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=34.8
Q ss_pred cccCCCCccEEEecCCcCCC------CCCCCCC-CcccEEEeceeeech---HHHHHHHhCCcCccEEEEeecCC
Q 009796 156 TIFSAKLLTSLKLFGCKLEQ------PSHCANL-QSLKKLSLDEVYVND---QMVQSLVRECRVLEDLSFFYCFG 220 (525)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~------~~~~~~l-~~L~~L~L~~~~~~~---~~l~~ll~~c~~Le~L~L~~c~~ 220 (525)
.+....+|+.|++++|.+.. -...... ..|++|.+..|..+. ..+...+..++.|+++++..|..
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 33445667777777776654 1111111 445666666665522 23344445566777777766654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.74 E-value=4.5 Score=42.07 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=19.9
Q ss_pred CCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeec
Q 009796 181 NLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYC 218 (525)
Q Consensus 181 ~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c 218 (525)
+.|.+..++|++|++ .-..+..+....|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 445555555555555 33344455555555555555555
No 91
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=54.67 E-value=14 Score=25.17 Aligned_cols=38 Identities=5% Similarity=-0.179 Sum_probs=29.1
Q ss_pred CCCCceEEEEeeecCChhccccHHHHHHhccccceEEEE
Q 009796 360 APCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLS 398 (525)
Q Consensus 360 ~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~ 398 (525)
.++|+.+.+.+ ..+.......+..++.+.+.|++++|+
T Consensus 13 ~s~Lk~v~~~~-f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKG-FRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEe-eeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 46788898875 444444566778889999999999885
No 92
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=50.34 E-value=2.5 Score=31.29 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=20.6
Q ss_pred cccccccCCCccccccccCCCCCcccc
Q 009796 493 KCWRHYLKGINTESFDPLQESSEVNYA 519 (525)
Q Consensus 493 ~~~~~~Lk~v~i~~f~~~~~~~~~~~~ 519 (525)
+|...+||.|+|.+|.+.+ .+++|.
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~--~e~~~~ 25 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTE--EEKELV 25 (72)
T ss_pred CcchheEEEEEEEeccCcH--HHHHHH
Confidence 4777889999999999877 777764
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.50 E-value=5.3 Score=41.58 Aligned_cols=59 Identities=22% Similarity=0.117 Sum_probs=29.6
Q ss_pred CCCccEEEecCCcCCC----CCCCCCCCcccEEEecee--ee-chHHHHHHHhCCcCccEEEEeecCC
Q 009796 160 AKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEV--YV-NDQMVQSLVRECRVLEDLSFFYCFG 220 (525)
Q Consensus 160 ~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~--~~-~~~~l~~ll~~c~~Le~L~L~~c~~ 220 (525)
.+.+..++|++|++.. .......|+|+.|+|++| .+ ++..+.++ ...-||+|.+.+|..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPL 282 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcc
Confidence 3455566666665443 223344566666666666 22 23233331 234456666666544
No 94
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=44.13 E-value=18 Score=28.61 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.4
Q ss_pred ccCCCCCHHHHHHHhcCCChHHHHH
Q 009796 8 DHISDLPTFIIHHIMSFLSPKDVVR 32 (525)
Q Consensus 8 D~is~LPd~iL~~Ils~L~~~d~~r 32 (525)
..++.||-||-..||++|+-+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5788999999999999999998764
No 95
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=41.77 E-value=7.3 Score=37.75 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhhcc
Q 009796 10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS 46 (525)
Q Consensus 10 is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw~~ 46 (525)
+..+|+++++.|++|+..++++++|.||+|-..+-+.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~ 44 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSH 44 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhc
Confidence 4579999999999999999999999999999876443
No 96
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=40.79 E-value=17 Score=20.56 Aligned_cols=14 Identities=29% Similarity=0.486 Sum_probs=9.1
Q ss_pred CCcccEEEeceeee
Q 009796 182 LQSLKKLSLDEVYV 195 (525)
Q Consensus 182 l~~L~~L~L~~~~~ 195 (525)
+++|++|+|++|.+
T Consensus 1 L~~L~~L~L~~N~l 14 (26)
T smart00369 1 LPNLRELDLSNNQL 14 (26)
T ss_pred CCCCCEEECCCCcC
Confidence 35667777776655
No 97
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=40.79 E-value=17 Score=20.56 Aligned_cols=14 Identities=29% Similarity=0.486 Sum_probs=9.1
Q ss_pred CCcccEEEeceeee
Q 009796 182 LQSLKKLSLDEVYV 195 (525)
Q Consensus 182 l~~L~~L~L~~~~~ 195 (525)
+++|++|+|++|.+
T Consensus 1 L~~L~~L~L~~N~l 14 (26)
T smart00370 1 LPNLRELDLSNNQL 14 (26)
T ss_pred CCCCCEEECCCCcC
Confidence 35667777776655
No 98
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=39.94 E-value=11 Score=35.34 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=38.8
Q ss_pred cCCCCCHHHHHHHhcCCC-hHHHHHHhhhchhh------hhhhccCCeeEeecCcc
Q 009796 9 HISDLPTFIIHHIMSFLS-PKDVVRTGILSTTW------RKFQTSFPVLDFDQNNF 57 (525)
Q Consensus 9 ~is~LPd~iL~~Ils~L~-~~d~~r~s~vSrrW------r~lw~~~~~l~~~~~~~ 57 (525)
.+.+||.+++..|+.+|+ -+|+..++.+-..- +.+|+.....+|....+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 688999999999999998 79999998874443 35688776667766655
No 99
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=38.10 E-value=37 Score=24.86 Aligned_cols=39 Identities=8% Similarity=-0.099 Sum_probs=29.0
Q ss_pred CCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEE
Q 009796 361 PCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLN 400 (525)
Q Consensus 361 ~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~ 400 (525)
++|+.+.+.. ..+.......+..++.+.+.|+.+++...
T Consensus 5 ~~Lk~v~i~~-f~g~~~e~~~~~~il~~a~~Lk~~~i~~~ 43 (72)
T smart00579 5 SSLEVLEIKG-YRGTEEEKELVKYFLENAPCLKKLTISVE 43 (72)
T ss_pred heEEEEEEEe-ccCcHHHHHHHHHHHhcchhheEEEEEee
Confidence 4588888875 34445556677888999999999988753
No 100
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=37.20 E-value=74 Score=29.18 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=36.4
Q ss_pred CCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec
Q 009796 181 NLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY 241 (525)
Q Consensus 181 ~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~ 241 (525)
+|.+|+.=++++..+....+..+-.-|.++|--.|.+|..-..-.+. .+|+--.+.+|.
T Consensus 169 ~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfedps~~k--aNLeganLkG~~ 227 (302)
T KOG1665|consen 169 QCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFEDPSGLK--ANLEGANLKGAD 227 (302)
T ss_pred hhhhhcccccccchhhhhhhhhhhheecccccccccCcCCCCccchh--cccccccccccc
Confidence 46677777777766655556666666778887777777653322222 455555555554
No 101
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=28.33 E-value=35 Score=19.67 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=7.5
Q ss_pred CcccEEEeceeee
Q 009796 183 QSLKKLSLDEVYV 195 (525)
Q Consensus 183 ~~L~~L~L~~~~~ 195 (525)
.+|+.|+|++|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4556666666554
No 102
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=20.62 E-value=1.4e+02 Score=23.40 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=22.3
Q ss_pred CCCCCccCCCCCHHHHHHHhcCCChHHHHHH
Q 009796 3 ETVDADHISDLPTFIIHHIMSFLSPKDVVRT 33 (525)
Q Consensus 3 ~~~~~D~is~LPd~iL~~Ils~L~~~d~~r~ 33 (525)
+....+-++.++++-+..|++.++..+++..
T Consensus 39 ~~~~~~il~~l~~~~~a~il~~m~~dd~~~l 69 (102)
T PF03448_consen 39 PDTQAEILEALSPEEAAEILAEMDSDDAADL 69 (102)
T ss_dssp CCCCCHCCCCS-HHHHHHHHCCS-HHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHccChHHHHHH
Confidence 3334567888999999999999998888755
Done!