Query 009796
Match_columns 525
No_of_seqs 393 out of 2803
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 13:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 1.3E-27 4.5E-32 256.5 9.9 434 1-463 1-497 (592)
2 2p1m_B Transport inhibitor res 99.9 2.3E-26 8E-31 246.8 10.2 222 6-240 2-245 (594)
3 2ast_B S-phase kinase-associat 99.9 2.3E-23 7.9E-28 207.2 8.6 234 5-310 4-258 (336)
4 4fmz_A Internalin; leucine ric 99.8 8E-18 2.7E-22 167.9 15.4 231 157-402 62-299 (347)
5 4fmz_A Internalin; leucine ric 99.7 5.9E-18 2E-22 168.9 10.6 272 133-432 65-343 (347)
6 4fcg_A Uncharacterized protein 99.7 6.5E-17 2.2E-21 159.9 15.2 217 128-369 75-309 (328)
7 3rgz_A Protein brassinosteroid 99.7 5.8E-18 2E-22 186.8 7.6 271 152-437 358-719 (768)
8 3rgz_A Protein brassinosteroid 99.7 1.1E-17 3.7E-22 184.7 9.4 283 158-462 197-522 (768)
9 2id5_A Lingo-1, leucine rich r 99.7 8.6E-18 2.9E-22 175.3 8.1 280 134-434 32-332 (477)
10 1o6v_A Internalin A; bacterial 99.7 9.4E-17 3.2E-21 166.9 15.3 164 134-309 68-231 (466)
11 3v47_A TOLL-like receptor 5B a 99.7 4.4E-17 1.5E-21 168.7 11.2 285 156-462 74-403 (455)
12 2id5_A Lingo-1, leucine rich r 99.7 1.8E-17 6.2E-22 172.8 7.9 285 149-462 22-328 (477)
13 1o6v_A Internalin A; bacterial 99.7 3E-16 1E-20 163.0 15.4 270 134-434 90-365 (466)
14 2z81_A CD282 antigen, TOLL-lik 99.7 5.8E-16 2E-20 164.3 16.8 180 273-480 333-524 (549)
15 3vq2_A TLR4, TOLL-like recepto 99.7 5.5E-17 1.9E-21 174.3 8.7 82 227-310 304-387 (606)
16 4eco_A Uncharacterized protein 99.7 1E-16 3.5E-21 172.9 10.7 170 134-310 206-413 (636)
17 3ogk_B Coronatine-insensitive 99.7 8.5E-17 2.9E-21 172.3 8.9 341 104-463 74-472 (592)
18 3t6q_A CD180 antigen; protein- 99.7 1.3E-16 4.5E-21 171.4 10.1 148 159-309 276-435 (606)
19 3vq2_A TLR4, TOLL-like recepto 99.6 1.5E-16 5E-21 171.0 9.3 257 157-433 281-556 (606)
20 4ecn_A Leucine-rich repeat pro 99.6 2.4E-16 8.2E-21 173.9 10.7 171 134-310 448-655 (876)
21 1z7x_W Ribonuclease inhibitor; 99.6 3.4E-17 1.2E-21 169.8 2.4 320 131-462 25-406 (461)
22 3t6q_A CD180 antigen; protein- 99.6 3.6E-16 1.2E-20 168.0 10.1 268 134-437 278-562 (606)
23 3o6n_A APL1; leucine-rich repe 99.6 3.7E-16 1.3E-20 158.5 9.2 268 134-432 69-349 (390)
24 4fcg_A Uncharacterized protein 99.6 1.1E-15 3.7E-20 151.2 11.8 148 160-312 80-242 (328)
25 2p1m_B Transport inhibitor res 99.6 6.9E-17 2.4E-21 173.0 2.6 245 122-369 91-405 (594)
26 3v47_A TOLL-like receptor 5B a 99.6 5.9E-16 2E-20 160.2 9.1 288 134-437 79-410 (455)
27 4ecn_A Leucine-rich repeat pro 99.6 5.8E-16 2E-20 170.8 9.1 279 134-434 491-818 (876)
28 4eco_A Uncharacterized protein 99.6 4.2E-16 1.5E-20 168.1 6.9 280 134-434 249-578 (636)
29 2z81_A CD282 antigen, TOLL-lik 99.6 4.7E-15 1.6E-19 157.2 14.4 307 134-462 26-395 (549)
30 3o6n_A APL1; leucine-rich repe 99.6 4.8E-16 1.7E-20 157.6 6.3 287 134-461 45-346 (390)
31 3bz5_A Internalin-J, INLJ; leu 99.6 6.1E-16 2.1E-20 159.9 7.1 270 134-434 64-351 (457)
32 3j0a_A TOLL-like receptor 5; m 99.6 1.8E-15 6.3E-20 168.5 11.2 135 154-288 66-218 (844)
33 1ogq_A PGIP-2, polygalacturona 99.6 4.3E-16 1.5E-20 153.0 5.2 241 134-432 50-301 (313)
34 3bz5_A Internalin-J, INLJ; leu 99.6 1.9E-15 6.5E-20 156.2 10.2 295 133-462 41-347 (457)
35 1ziw_A TOLL-like receptor 3; i 99.6 2E-15 7E-20 164.3 10.3 286 134-432 222-570 (680)
36 3j0a_A TOLL-like receptor 5; m 99.6 8.8E-15 3E-19 163.0 15.3 264 134-404 73-440 (844)
37 2z7x_B TOLL-like receptor 1, v 99.6 1.6E-14 5.6E-19 152.0 15.7 123 296-435 321-457 (520)
38 3oja_B Anopheles plasmodium-re 99.6 4.6E-15 1.6E-19 159.0 11.4 271 134-434 75-357 (597)
39 1z7x_W Ribonuclease inhibitor; 99.6 2E-16 6.9E-21 164.0 0.7 316 135-464 4-380 (461)
40 2z80_A TOLL-like receptor 2, v 99.6 8.1E-15 2.8E-19 146.5 12.3 257 151-435 44-314 (353)
41 3oja_B Anopheles plasmodium-re 99.6 7.6E-16 2.6E-20 165.0 5.0 287 134-461 51-352 (597)
42 2z63_A TOLL-like receptor 4, v 99.6 2E-15 6.9E-20 160.7 7.6 172 272-463 345-527 (570)
43 2ast_B S-phase kinase-associat 99.6 2.2E-15 7.4E-20 149.4 6.7 250 126-405 38-308 (336)
44 3g06_A SSPH2 (leucine-rich rep 99.6 4E-14 1.4E-18 151.0 16.9 255 134-434 40-296 (622)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3E-14 1E-18 151.5 15.5 123 296-435 350-486 (562)
46 2z7x_B TOLL-like receptor 1, v 99.6 7.6E-15 2.6E-19 154.6 10.4 120 134-263 21-149 (520)
47 2z63_A TOLL-like receptor 4, v 99.5 1.2E-14 4.1E-19 154.7 11.6 245 155-437 276-533 (570)
48 1xku_A Decorin; proteoglycan, 99.5 7.9E-15 2.7E-19 145.1 9.1 248 151-433 44-304 (330)
49 3o53_A Protein LRIM1, AGAP0063 99.5 1.7E-14 5.9E-19 141.8 8.9 225 161-398 34-270 (317)
50 2z66_A Variable lymphocyte rec 99.5 4.8E-14 1.7E-18 137.8 11.7 220 149-370 18-257 (306)
51 3oja_A Leucine-rich immune mol 99.5 1.8E-14 6.3E-19 150.1 8.7 226 161-398 34-270 (487)
52 2z80_A TOLL-like receptor 2, v 99.5 3.2E-14 1.1E-18 142.1 10.1 170 134-310 52-233 (353)
53 1ziw_A TOLL-like receptor 3; i 99.5 6.2E-14 2.1E-18 152.6 10.9 269 157-434 45-341 (680)
54 2ft3_A Biglycan; proteoglycan, 99.5 2.2E-14 7.7E-19 142.0 6.7 238 161-433 54-305 (332)
55 3zyj_A Leucine-rich repeat-con 99.5 8E-14 2.7E-18 143.6 9.8 212 149-370 54-288 (440)
56 3g06_A SSPH2 (leucine-rich rep 99.5 3.6E-13 1.2E-17 143.7 14.3 235 134-404 61-298 (622)
57 3zyi_A Leucine-rich repeat-con 99.5 8.5E-14 2.9E-18 143.9 9.0 212 150-370 66-299 (452)
58 1xku_A Decorin; proteoglycan, 99.5 6.3E-13 2.2E-17 131.4 14.7 252 134-400 52-329 (330)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 3.6E-13 1.2E-17 143.2 13.7 152 271-437 350-512 (562)
60 3zyi_A Leucine-rich repeat-con 99.5 2.5E-13 8.5E-18 140.4 12.1 211 134-352 75-301 (452)
61 1ogq_A PGIP-2, polygalacturona 99.4 5.8E-14 2E-18 137.8 6.5 191 134-330 76-278 (313)
62 1jl5_A Outer protein YOPM; leu 99.4 3.3E-13 1.1E-17 139.3 11.5 237 161-434 131-369 (454)
63 3zyj_A Leucine-rich repeat-con 99.4 5E-13 1.7E-17 137.6 12.4 212 134-353 64-291 (440)
64 3o53_A Protein LRIM1, AGAP0063 99.4 6.7E-14 2.3E-18 137.6 5.2 232 162-432 11-247 (317)
65 2ft3_A Biglycan; proteoglycan, 99.4 1.8E-13 6.2E-18 135.4 8.0 185 134-329 54-250 (332)
66 1jl5_A Outer protein YOPM; leu 99.4 9.5E-13 3.2E-17 135.9 12.7 267 134-433 131-407 (454)
67 2z66_A Variable lymphocyte rec 99.4 2.3E-13 7.9E-18 133.0 7.7 240 164-437 10-263 (306)
68 1ozn_A Reticulon 4 receptor; N 99.4 9.1E-13 3.1E-17 127.3 10.7 199 150-370 23-234 (285)
69 1h6u_A Internalin H; cell adhe 99.4 2.3E-12 7.8E-17 126.1 13.1 162 134-308 41-204 (308)
70 1ozn_A Reticulon 4 receptor; N 99.4 5.1E-13 1.7E-17 129.1 8.3 171 134-310 32-212 (285)
71 1h6u_A Internalin H; cell adhe 99.4 1.4E-12 4.9E-17 127.5 11.1 185 159-352 39-228 (308)
72 3oja_A Leucine-rich immune mol 99.4 1.1E-12 3.8E-17 136.6 10.8 207 135-354 35-250 (487)
73 4g8a_A TOLL-like receptor 4; l 99.4 7.6E-13 2.6E-17 142.4 8.5 80 135-218 101-183 (635)
74 2ca6_A RAN GTPase-activating p 99.4 4.1E-13 1.4E-17 135.7 5.7 91 151-241 22-133 (386)
75 2ca6_A RAN GTPase-activating p 99.3 7.3E-13 2.5E-17 133.9 6.6 175 134-310 32-255 (386)
76 3rfs_A Internalin B, repeat mo 99.3 9E-13 3.1E-17 126.5 6.6 171 133-310 40-216 (272)
77 1wwl_A Monocyte differentiatio 99.3 1.8E-13 6.1E-18 134.2 1.0 237 160-433 42-307 (312)
78 2xwt_C Thyrotropin receptor; s 99.3 5.2E-12 1.8E-16 118.7 9.9 154 150-310 23-190 (239)
79 3rfs_A Internalin B, repeat mo 99.3 2.2E-12 7.6E-17 123.7 7.5 168 158-329 38-214 (272)
80 2z62_A TOLL-like receptor 4, v 99.3 5.2E-12 1.8E-16 121.4 9.4 137 149-288 18-163 (276)
81 1wwl_A Monocyte differentiatio 99.3 1.3E-12 4.5E-17 128.0 5.1 149 159-309 93-263 (312)
82 2o6q_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 120.9 9.2 154 151-309 29-191 (270)
83 1p9a_G Platelet glycoprotein I 99.3 1.3E-11 4.4E-16 119.5 11.2 149 157-309 6-158 (290)
84 4glp_A Monocyte differentiatio 99.3 2.7E-12 9.2E-17 125.7 6.3 180 122-309 79-282 (310)
85 2o6q_A Variable lymphocyte rec 99.3 8.4E-12 2.9E-16 119.5 9.2 171 134-310 37-216 (270)
86 2xwt_C Thyrotropin receptor; s 99.3 6.3E-12 2.2E-16 118.1 8.0 190 134-331 31-237 (239)
87 2z62_A TOLL-like receptor 4, v 99.3 4.2E-12 1.4E-16 122.1 6.1 170 134-310 28-211 (276)
88 1h6t_A Internalin B; cell adhe 99.2 2.2E-11 7.5E-16 118.0 10.2 164 134-310 46-211 (291)
89 1h6t_A Internalin B; cell adhe 99.2 2.5E-11 8.4E-16 117.6 9.8 146 158-310 43-189 (291)
90 3goz_A Leucine-rich repeat-con 99.2 8E-12 2.8E-16 125.1 6.5 157 154-310 15-207 (362)
91 1p9a_G Platelet glycoprotein I 99.2 2.3E-11 7.7E-16 117.8 8.8 165 135-310 11-183 (290)
92 4ezg_A Putative uncharacterize 99.2 2.3E-11 7.9E-16 110.6 8.2 145 134-309 44-191 (197)
93 3m19_A Variable lymphocyte rec 99.2 1.6E-11 5.4E-16 116.3 7.0 167 136-310 16-190 (251)
94 4glp_A Monocyte differentiatio 99.2 1.1E-11 3.7E-16 121.4 5.9 151 159-310 89-262 (310)
95 4ezg_A Putative uncharacterize 99.2 2.7E-11 9.1E-16 110.2 8.1 127 134-288 66-195 (197)
96 4g8a_A TOLL-like receptor 4; l 99.2 1.2E-10 4.1E-15 125.2 14.2 125 134-263 52-184 (635)
97 3goz_A Leucine-rich repeat-con 99.2 1.1E-11 3.9E-16 124.0 5.3 253 165-433 2-295 (362)
98 1m9s_A Internalin B; cell inva 99.2 4.5E-11 1.5E-15 127.3 9.2 167 133-311 42-209 (605)
99 1m9s_A Internalin B; cell inva 99.2 2.9E-11 9.8E-16 128.8 7.6 166 158-331 40-208 (605)
100 1xeu_A Internalin C; cellular 99.1 1.2E-10 4.2E-15 110.9 8.0 146 157-310 37-183 (263)
101 3m19_A Variable lymphocyte rec 99.0 2.1E-10 7.2E-15 108.5 7.0 151 134-289 35-194 (251)
102 4ay9_X Follicle-stimulating ho 99.0 9.1E-10 3.1E-14 109.5 11.5 215 150-369 21-254 (350)
103 2ell_A Acidic leucine-rich nuc 99.0 1.4E-10 4.9E-15 102.4 4.5 127 161-310 24-158 (168)
104 1xeu_A Internalin C; cellular 99.0 1.3E-10 4.5E-15 110.7 2.7 143 160-310 18-161 (263)
105 2o6s_A Variable lymphocyte rec 99.0 3.5E-10 1.2E-14 103.6 5.4 135 150-309 19-158 (208)
106 3cvr_A Invasion plasmid antige 99.0 2.1E-09 7.1E-14 113.3 11.6 151 134-309 59-217 (571)
107 2je0_A Acidic leucine-rich nuc 98.9 1.4E-10 4.8E-15 100.2 1.2 125 160-307 16-148 (149)
108 4ay9_X Follicle-stimulating ho 98.9 2.9E-09 9.8E-14 105.9 10.8 208 134-349 30-254 (350)
109 3e6j_A Variable lymphocyte rec 98.9 1.4E-09 4.9E-14 101.2 7.3 135 149-310 30-170 (229)
110 2v70_A SLIT-2, SLIT homolog 2 98.9 1.2E-09 4.1E-14 101.1 6.5 133 152-310 25-164 (220)
111 3cvr_A Invasion plasmid antige 98.9 4.9E-09 1.7E-13 110.4 11.4 175 161-370 59-239 (571)
112 2ell_A Acidic leucine-rich nuc 98.9 7.4E-10 2.5E-14 97.7 3.9 105 134-241 24-131 (168)
113 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 1.1E-09 3.7E-14 76.2 3.3 40 5-44 4-43 (53)
114 2o6s_A Variable lymphocyte rec 98.9 1.8E-09 6.2E-14 98.8 5.5 140 164-330 10-158 (208)
115 3e6j_A Variable lymphocyte rec 98.8 4.6E-09 1.6E-13 97.7 7.2 141 163-329 21-168 (229)
116 2je0_A Acidic leucine-rich nuc 98.8 1.9E-09 6.3E-14 93.1 4.1 105 134-241 17-124 (149)
117 2v9t_B SLIT homolog 2 protein 98.8 4E-09 1.4E-13 97.5 6.5 135 149-310 22-163 (220)
118 2v9t_B SLIT homolog 2 protein 98.8 5.5E-09 1.9E-13 96.6 6.5 139 164-329 14-161 (220)
119 2v70_A SLIT-2, SLIT homolog 2 98.8 9.8E-09 3.3E-13 94.9 6.9 128 134-288 32-167 (220)
120 2xot_A Amphoterin-induced prot 98.7 6.4E-09 2.2E-13 103.8 5.8 153 150-309 30-199 (361)
121 1a9n_A U2A', U2A'; complex (nu 98.7 2.2E-09 7.6E-14 95.5 2.1 132 157-311 15-152 (176)
122 1a9n_A U2A', U2A'; complex (nu 98.7 2.9E-09 1E-13 94.7 2.3 130 178-331 14-151 (176)
123 1ds9_A Outer arm dynein; leuci 98.7 6.5E-10 2.2E-14 101.0 -3.5 136 150-306 37-181 (198)
124 3un9_A NLR family member X1; l 98.7 3.8E-09 1.3E-13 105.7 0.9 60 251-310 182-250 (372)
125 1dce_A Protein (RAB geranylger 98.6 9.4E-10 3.2E-14 116.3 -4.5 186 158-347 346-566 (567)
126 2xot_A Amphoterin-induced prot 98.6 1.3E-08 4.5E-13 101.5 3.0 150 134-288 39-203 (361)
127 3e4g_A ATP synthase subunit S, 98.6 7.8E-08 2.7E-12 84.3 6.3 91 151-241 51-150 (176)
128 1w8a_A SLIT protein; signaling 98.5 4.9E-08 1.7E-12 88.0 4.2 65 151-218 21-88 (192)
129 1ds9_A Outer arm dynein; leuci 98.5 2.3E-08 7.9E-13 90.6 0.9 109 178-311 43-152 (198)
130 2ra8_A Uncharacterized protein 98.4 4.7E-07 1.6E-11 89.8 9.6 204 86-310 92-318 (362)
131 1dce_A Protein (RAB geranylger 98.4 1.6E-07 5.5E-12 99.2 6.3 117 184-305 442-566 (567)
132 2ra8_A Uncharacterized protein 98.4 2.8E-07 9.6E-12 91.5 7.5 130 199-330 163-317 (362)
133 2wfh_A SLIT homolog 2 protein 98.4 2.8E-07 9.5E-12 83.1 5.5 121 164-309 13-136 (193)
134 3un9_A NLR family member X1; l 98.4 2E-08 6.7E-13 100.5 -2.6 163 130-294 68-259 (372)
135 4b8c_D Glucose-repressible alc 98.3 1.5E-07 5.1E-12 102.6 3.5 109 157-288 220-330 (727)
136 3e4g_A ATP synthase subunit S, 98.3 5.6E-07 1.9E-11 78.9 5.9 64 270-333 81-152 (176)
137 2o6r_A Variable lymphocyte rec 98.3 4.7E-07 1.6E-11 80.3 5.4 35 161-195 28-64 (177)
138 3sb4_A Hypothetical leucine ri 98.3 8E-07 2.8E-11 87.3 6.9 36 182-219 100-135 (329)
139 1w8a_A SLIT protein; signaling 98.3 6.5E-07 2.2E-11 80.6 5.6 122 164-289 11-141 (192)
140 4b8c_D Glucose-repressible alc 98.2 3.8E-07 1.3E-11 99.4 3.7 60 250-311 268-328 (727)
141 3sb4_A Hypothetical leucine ri 98.2 9.5E-07 3.3E-11 86.7 6.2 143 160-308 100-306 (329)
142 2o6r_A Variable lymphocyte rec 98.2 1.2E-06 4.2E-11 77.5 6.1 123 163-289 9-139 (177)
143 2wfh_A SLIT homolog 2 protein 98.2 9.2E-07 3.1E-11 79.7 4.9 116 149-288 21-140 (193)
144 4fdw_A Leucine rich hypothetic 98.1 6.1E-06 2.1E-10 83.2 9.8 142 162-308 158-309 (401)
145 2e31_A FBS1, F-box only protei 98.0 4.1E-06 1.4E-10 79.4 3.9 36 8-43 49-85 (297)
146 3l2o_B F-box only protein 4; s 97.9 2E-06 6.8E-11 80.5 1.7 35 9-43 4-38 (312)
147 2r9u_A Variable lymphocyte rec 97.9 7.8E-06 2.7E-10 72.1 5.0 67 150-219 24-92 (174)
148 3g39_A Variable lymphocyte rec 97.9 1.2E-05 4.1E-10 70.6 5.9 87 150-240 21-112 (170)
149 3v7d_B Cell division control p 97.7 1.3E-05 4.3E-10 82.2 2.3 41 4-44 9-49 (464)
150 1io0_A Tropomodulin; LRR prote 97.7 1.7E-05 5.9E-10 70.7 2.9 115 180-310 33-162 (185)
151 4fdw_A Leucine rich hypothetic 97.6 7.8E-05 2.7E-09 75.0 7.7 141 156-308 175-332 (401)
152 1io0_A Tropomodulin; LRR prote 97.5 2.3E-05 8E-10 69.8 1.6 62 159-220 34-105 (185)
153 3g39_A Variable lymphocyte rec 97.5 8.2E-05 2.8E-09 65.2 5.1 58 251-309 53-112 (170)
154 1p22_A F-BOX/WD-repeat protein 97.5 2.9E-05 1E-09 78.9 2.5 42 2-43 3-48 (435)
155 2ovr_B FBW7, F-BOX/WD repeat p 97.5 4.8E-05 1.6E-09 77.5 4.1 41 3-43 12-52 (445)
156 2r9u_A Variable lymphocyte rec 97.5 7.5E-05 2.6E-09 65.7 4.4 82 134-220 33-117 (174)
157 2ifg_A High affinity nerve gro 97.3 0.00011 3.6E-09 72.5 4.0 90 149-241 20-114 (347)
158 4fs7_A Uncharacterized protein 97.2 0.00066 2.3E-08 68.1 8.1 53 251-307 252-305 (394)
159 2ifg_A High affinity nerve gro 97.0 0.00029 9.9E-09 69.3 3.3 74 165-241 12-91 (347)
160 4fs7_A Uncharacterized protein 96.8 0.00085 2.9E-08 67.2 5.1 61 356-431 315-375 (394)
161 4gt6_A Cell surface protein; l 96.7 0.0066 2.3E-07 60.7 10.1 78 340-432 287-367 (394)
162 3rw6_A Nuclear RNA export fact 96.6 0.00053 1.8E-08 64.5 1.4 58 160-219 169-231 (267)
163 3rw6_A Nuclear RNA export fact 96.0 0.0023 8E-08 60.0 2.4 15 205-219 167-181 (267)
164 4gt6_A Cell surface protein; l 95.4 0.022 7.5E-07 56.8 6.7 100 228-329 263-366 (394)
165 1pgv_A TMD-1, tropomodulin TMD 94.0 0.048 1.6E-06 48.3 4.5 36 273-308 97-135 (197)
166 4h09_A Hypothetical leucine ri 91.8 0.2 6.8E-06 49.3 6.0 146 156-307 153-318 (379)
167 1pgv_A TMD-1, tropomodulin TMD 90.6 0.098 3.4E-06 46.3 2.0 21 121-141 26-48 (197)
168 4h09_A Hypothetical leucine ri 89.3 0.27 9.3E-06 48.4 4.3 142 158-308 191-342 (379)
169 3rfe_A Platelet glycoprotein I 83.0 0.76 2.6E-05 37.5 3.1 42 152-195 24-67 (130)
170 3rfe_A Platelet glycoprotein I 52.0 9.3 0.00032 30.8 3.0 33 275-308 32-64 (130)
171 2lz0_A Uncharacterized protein 27.4 59 0.002 24.6 3.8 35 158-192 17-52 (100)
172 2kwv_A RAD30 homolog B, DNA po 24.5 58 0.002 20.7 2.5 18 7-24 18-35 (48)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.3e-27 Score=256.48 Aligned_cols=434 Identities=13% Similarity=0.091 Sum_probs=238.9
Q ss_pred CCCCCCCccCC----CCCHHHHHHHhcCC-ChHHHHHHhhhchhhhhhhccCCe-eEeecCccccc-ccccccccc----
Q 009796 1 MDETVDADHIS----DLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQTSFPV-LDFDQNNFLVK-SRVKRVLPF---- 69 (525)
Q Consensus 1 ~~~~~~~D~is----~LPd~iL~~Ils~L-~~~d~~r~s~vSrrWr~lw~~~~~-l~~~~~~~~~~-~~~~~~~~~---- 69 (525)
|++. +.||++ +||||||.+||+|| +.+|++++++|||||++++...+. +.+. ..+... .+.-+.+|.
T Consensus 1 m~~~-~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L 78 (592)
T 3ogk_B 1 MEDP-DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYTATPDRLSRRFPNLRSL 78 (592)
T ss_dssp ------------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGGSCHHHHHHHCTTCSEE
T ss_pred CCCh-hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccccChHHHHHhCCCCeEE
Confidence 5554 567776 89999999999999 899999999999999998533222 2111 111000 000000000
Q ss_pred ------chhhhhh-hhhhhHhHhHHHHHHHHHhhccccCCcccceEEEEEeeccccCCchhHHHHHHHHHHcCCeEEEEE
Q 009796 70 ------NLEDMMS-RKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFE 142 (525)
Q Consensus 70 ------~~~d~~~-~~~~~~~~~~~~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~ 142 (525)
...|+-. ........ ...+..+. .....++.+.+.... .......|+......++++|++.
T Consensus 79 ~L~~~~~~~~~~~~~~~~~~~~---~~~l~~l~----~~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 79 KLKGKPRAAMFNLIPENWGGYV---TPWVTEIS----NNLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp EEECSCGGGGGTCSCTTSCCBC---HHHHHHHH----HHCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEE
T ss_pred EecCCcchhhcccccccccccc---hHHHHHHH----hhCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECc
Confidence 0000000 00000000 00111111 122456666665221 13334455555444458888876
Q ss_pred eecCCCCcccCCccccCCCCccEEEecCCcCCCC------CCCCCCCcccEEEeceeeec---hHHHHHHHhCCcCccEE
Q 009796 143 VITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQP------SHCANLQSLKKLSLDEVYVN---DQMVQSLVRECRVLEDL 213 (525)
Q Consensus 143 ~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~c~~Le~L 213 (525)
... ......++.....|++|++|+|++|.+... ....++++|++|+++++.++ ...+..++.+|++|++|
T Consensus 147 ~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 147 KCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp SCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred CCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 521 011122333334678888888888876541 12346788888888888773 56778888888999999
Q ss_pred EEeecCCCce-eecccCCCccEEEEeeeccc-----cceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCC
Q 009796 214 SFFYCFGLKR-LRISEAHKLKSLILRFTYQE-----LESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHF 286 (525)
Q Consensus 214 ~L~~c~~l~~-l~i~~l~~L~~L~l~~c~~~-----l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~ 286 (525)
++.+|....- -.+.++++|+.|++..+... .......+++|+.|.+++.. ...+..+..+++|++|+++++.+
T Consensus 226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 8888753221 11335678888888754311 11112256788888887765 45555677788888888888888
Q ss_pred ChhhhhhhhcCCCCCcEEEecCccc---hhHhhhcCcccceEcccc----------ccch-----hhhcccCCCcceEEE
Q 009796 287 NDQEFHPLISKFPLLEDLSIISLET---LERIMISSNRLMHLEVYN----------CSGL-----NRINVDAPNLVSFDF 348 (525)
Q Consensus 287 ~~~~~~~ll~~~~~Le~L~L~~c~~---l~~~~~~~~~L~~L~l~~----------c~~L-----~~l~~~~p~L~~l~~ 348 (525)
++..+..++.++++|++|++..+.. +..+...+++|++|++.+ |..+ ..+...+|+|+.|.+
T Consensus 306 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 7776667778888888888874322 233334467888888884 6554 223345788888888
Q ss_pred ecCCCC----cccc-cCCCCceEEEEee---ecCChhc-cccHHHHHHhccccceEEEEEEee--eeeeeeccccccCCC
Q 009796 349 EDNPIP----IVST-NAPCPLNVLFSNF---GDIDTHW-YLNLMEFIGAFNQIGELHLSLNYK--QVLFNIDEFRSCHPS 417 (525)
Q Consensus 349 ~g~~~~----~~~~-~~~~L~~l~l~~~---~~~~~~~-~~~l~~~l~~l~~L~~L~L~~~~~--~~~~~lp~~~~~~~~ 417 (525)
....+. ..+. .+++|+.+++..+ ..+...- ...+..++.++++|++|+++.+.. .... ++ ..
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~-~~-~~----- 458 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG-LS-YI----- 458 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH-HH-HH-----
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH-HH-HH-----
Confidence 665554 1222 3778888888631 1111100 012455677788888888875432 1111 11 11
Q ss_pred CCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecC
Q 009796 418 LPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSP 463 (525)
Q Consensus 418 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~~ 463 (525)
...+++|++|.|..+.. . -.++...+-.++.|++|.|..
T Consensus 459 ~~~~~~L~~L~L~~n~l----~---~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGE----S---DEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp HHSCTTCCEEEECSCCS----S---HHHHHHHHTCCTTCCEEEEES
T ss_pred HHhCccceEeeccCCCC----C---HHHHHHHHhcCcccCeeeccC
Confidence 11256677777776521 1 123333344445677777743
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.3e-26 Score=246.84 Aligned_cols=222 Identities=15% Similarity=0.185 Sum_probs=104.8
Q ss_pred CCccCCCCCHHHHHHHhcCCC-hHHHHHHhhhchhhhhhhc-cCCeeEeecCcccccccccccccc----------chhh
Q 009796 6 DADHISDLPTFIIHHIMSFLS-PKDVVRTGILSTTWRKFQT-SFPVLDFDQNNFLVKSRVKRVLPF----------NLED 73 (525)
Q Consensus 6 ~~D~is~LPd~iL~~Ils~L~-~~d~~r~s~vSrrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~----------~~~d 73 (525)
+.|++++||||||.+||+||| .+|++++++|||||+++.. ....+.+.........+.-+.+|. ...|
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 469999999999999999999 9999999999999998721 122233322111000000000000 0000
Q ss_pred hhhhhhhhHhHhHHHHHHHHHhhccccCCcccceEEEEEeeccccCCchhHHHHHHHHHHcCCeEEEEEeecCCCCcccC
Q 009796 74 MMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNAL 153 (525)
Q Consensus 74 ~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~l 153 (525)
+.-..+ .....+...+..+. .....++.+.+..... ....+.. +.. ..+++++|++.... ......+
T Consensus 82 ~~l~~~--~~~~~~~~~l~~l~----~~~~~L~~L~L~~~~~----~~~~~~~-l~~-~~~~L~~L~L~~~~-~~~~~~l 148 (594)
T 2p1m_B 82 FNLVPD--GWGGYVYPWIEAMS----SSYTWLEEIRLKRMVV----TDDCLEL-IAK-SFKNFKVLVLSSCE-GFSTDGL 148 (594)
T ss_dssp GTCSCT--TSCCBCHHHHHHHH----HHCTTCCEEEEESCBC----CHHHHHH-HHH-HCTTCCEEEEESCE-EEEHHHH
T ss_pred cccccc--cccchhhHHHHHHH----HhCCCCCeEEeeCcEE----cHHHHHH-HHH-hCCCCcEEeCCCcC-CCCHHHH
Confidence 000000 00000001111111 1123455555552211 0111111 110 12467777765410 0111123
Q ss_pred CccccCCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceee--echHHHHHHHhCCcCccEEEEeecCCCceee
Q 009796 154 PQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVY--VNDQMVQSLVRECRVLEDLSFFYCFGLKRLR 225 (525)
Q Consensus 154 p~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~--~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~ 225 (525)
+.....|++|++|+|++|.+.. ......+++|++|+++++. +++..+..++.+|++|++|++.+|..+..+.
T Consensus 149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~ 228 (594)
T 2p1m_B 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA 228 (594)
T ss_dssp HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH
Confidence 3333467777888877776543 1223366778888887775 4556677777778888888887774433321
Q ss_pred --cccCCCccEEEEeee
Q 009796 226 --ISEAHKLKSLILRFT 240 (525)
Q Consensus 226 --i~~l~~L~~L~l~~c 240 (525)
+..+++|+.|++..|
T Consensus 229 ~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 229 TLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHCTTCSEEECSBC
T ss_pred HHHhcCCcceEcccccc
Confidence 224566666665544
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.3e-23 Score=207.22 Aligned_cols=234 Identities=19% Similarity=0.263 Sum_probs=128.2
Q ss_pred CCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhhcc---CCeeEeecCccccccccccccccchhhhhhhhhhh
Q 009796 5 VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS---FPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFC 81 (525)
Q Consensus 5 ~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (525)
.+...+++|||||+.+||+||+.+|+++++.|||+|+++... ...+++....+
T Consensus 4 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~------------------------ 59 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL------------------------ 59 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC------------------------
T ss_pred cccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC------------------------
Confidence 345578999999999999999999999999999999998532 12222222211
Q ss_pred HhHhHHHHHHHHHhhccccCCcccceEEEEEeeccccCCchhHHHHHHHHHHcCCeEEEEEeecCCCCcccCCccccCCC
Q 009796 82 KSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAK 161 (525)
Q Consensus 82 ~~~~~~~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~lp~~l~~~~ 161 (525)
. ...+.....++++.+++.. ......+..++.++
T Consensus 60 ---------------------------------------~---~~~~~~~~~~~l~~L~l~~----n~l~~~~~~~~~~~ 93 (336)
T 2ast_B 60 ---------------------------------------H---PDVTGRLLSQGVIAFRCPR----SFMDQPLAEHFSPF 93 (336)
T ss_dssp ---------------------------------------C---HHHHHHHHHTTCSEEECTT----CEECSCCCSCCCCB
T ss_pred ---------------------------------------C---HHHHHhhhhccceEEEcCC----ccccccchhhccCC
Confidence 0 0112222234455555432 11112223345566
Q ss_pred CccEEEecCCcCCC---CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--ee--cccCCCccE
Q 009796 162 LLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LR--ISEAHKLKS 234 (525)
Q Consensus 162 ~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~--i~~l~~L~~ 234 (525)
+|++|+|++|.+.. +..+..+++|++|+|++|.+++.. ...++.+++|++|++++|..+.. +. +.++++|+.
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHH-HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 77777777766543 334556677777777776664432 33445567777777776644432 11 234566666
Q ss_pred EEEeee-c-c--ccceEEEeCC-CccEEEecccc-----ccceeeccCCCCccEEEeeCCC-CChhhhhhhhcCCCCCcE
Q 009796 235 LILRFT-Y-Q--ELESVEIAVP-SLQQLELSFSR-----VPRLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLED 303 (525)
Q Consensus 235 L~l~~c-~-~--~l~~~~~~~~-~L~~L~l~~~~-----~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~~~~Le~ 303 (525)
|++++| . . .+......+| +|++|++++|. ...+..++.+++|+.|+++++. +++..+. .+.++++|++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~ 251 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQH 251 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCE
Confidence 666666 2 1 0122222455 66666666552 1122334456666666666655 4443222 3345566666
Q ss_pred EEecCcc
Q 009796 304 LSIISLE 310 (525)
Q Consensus 304 L~L~~c~ 310 (525)
|++++|.
T Consensus 252 L~l~~~~ 258 (336)
T 2ast_B 252 LSLSRCY 258 (336)
T ss_dssp EECTTCT
T ss_pred eeCCCCC
Confidence 6666654
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=8e-18 Score=167.89 Aligned_cols=231 Identities=18% Similarity=0.168 Sum_probs=105.8
Q ss_pred ccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796 157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (525)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 236 (525)
+..+++|++|++++|.+...+.+..+++|++|++++|.++. ++ .+..+++|++|++++|.......+..+++|+.|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEE
Confidence 44555666666666655552225556666666666655522 11 2455566666666555432222244455566666
Q ss_pred Eeeec--cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhH
Q 009796 237 LRFTY--QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER 314 (525)
Q Consensus 237 l~~c~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~ 314 (525)
+++|. ..+.. ...+++|++|+++++.......++.+++|+.|+++++.+++. .. +..+++|+.|+++++.....
T Consensus 139 l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 139 LGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI--SP-LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp CTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc--cc-ccCCCccceeecccCCCCCC
Confidence 65553 11111 113455555555555511111245555555555555555442 11 44555555555555432111
Q ss_pred h-hhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC--cccccCCCCceEEEEeeecCChhccccHHHHHHhc
Q 009796 315 I-MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAF 389 (525)
Q Consensus 315 ~-~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l 389 (525)
. ...+++|+.|+++++. .+.. ....++|+.|.++++.+. ..+..+++|+.+++++ +.+... ..+..+
T Consensus 215 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-n~l~~~------~~~~~l 286 (347)
T 4fmz_A 215 TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS-NQISDI------SVLNNL 286 (347)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS-SCCCCC------GGGGGC
T ss_pred chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccC-CccCCC------hhhcCC
Confidence 1 1223455555555532 1111 123455555555555432 1223455555555543 111111 123445
Q ss_pred cccceEEEEEEee
Q 009796 390 NQIGELHLSLNYK 402 (525)
Q Consensus 390 ~~L~~L~L~~~~~ 402 (525)
++|+.|+++.|..
T Consensus 287 ~~L~~L~L~~n~l 299 (347)
T 4fmz_A 287 SQLNSLFLNNNQL 299 (347)
T ss_dssp TTCSEEECCSSCC
T ss_pred CCCCEEECcCCcC
Confidence 5555555554443
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=5.9e-18 Score=168.87 Aligned_cols=272 Identities=18% Similarity=0.221 Sum_probs=203.6
Q ss_pred HcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 133 ~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
.+++++|++.. + ....++. +..+++|++|++++|.+...+.+..+++|++|++++|.+.+- .. +..+++|++
T Consensus 65 ~~~L~~L~l~~--n--~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~L~~ 136 (347)
T 4fmz_A 65 LTNLEYLNLNG--N--QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTKMYS 136 (347)
T ss_dssp CTTCCEEECCS--S--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTTCCE
T ss_pred cCCccEEEccC--C--ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCceeE
Confidence 35899999876 2 2334554 778999999999999888756688999999999999988432 22 788999999
Q ss_pred EEEeecCCCceee-cccCCCccEEEEeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhh
Q 009796 213 LSFFYCFGLKRLR-ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQE 290 (525)
Q Consensus 213 L~L~~c~~l~~l~-i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 290 (525)
|++++|.....+. +..+++|+.|++++|. ..+.. ...+++|++|++++|.......+..+++|+.|+++++.+++..
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc
Confidence 9999997655433 5678999999999986 22222 2368999999999998222223889999999999999988742
Q ss_pred hhhhhcCCCCCcEEEecCccchhHh-hhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC--cccccCCCCce
Q 009796 291 FHPLISKFPLLEDLSIISLETLERI-MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLN 365 (525)
Q Consensus 291 ~~~ll~~~~~Le~L~L~~c~~l~~~-~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~--~~~~~~~~L~~ 365 (525)
. +..+++|++|++++|...... ...+++|+.|+++++. .+..+ ...++|+.|.++++.+. ..+..+++|+.
T Consensus 216 --~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 291 (347)
T 4fmz_A 216 --P-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAV-KDLTKLKMLNVGSNQISDISVLNNLSQLNS 291 (347)
T ss_dssp --G-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG-TTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred --h-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhH-hcCCCcCEEEccCCccCCChhhcCCCCCCE
Confidence 2 778999999999998542211 3346899999999863 22222 45789999999998765 33456899999
Q ss_pred EEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796 366 VLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (525)
Q Consensus 366 l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~ 432 (525)
++++. +.+ .......+..+++|+.|+++.|...... .+..+++|++|++.+|
T Consensus 292 L~L~~-n~l----~~~~~~~l~~l~~L~~L~L~~n~l~~~~----------~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 292 LFLNN-NQL----GNEDMEVIGGLTNLTTLFLSQNHITDIR----------PLASLSKMDSADFANQ 343 (347)
T ss_dssp EECCS-SCC----CGGGHHHHHTCTTCSEEECCSSSCCCCG----------GGGGCTTCSEESSSCC
T ss_pred EECcC-CcC----CCcChhHhhccccCCEEEccCCcccccc----------Chhhhhccceeehhhh
Confidence 99985 332 2235567789999999999988766532 2556788999988877
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=6.5e-17 Score=159.95 Aligned_cols=217 Identities=18% Similarity=0.212 Sum_probs=141.7
Q ss_pred HHHHHHcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhC
Q 009796 128 VELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRE 206 (525)
Q Consensus 128 l~~~~~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~ 206 (525)
+..+...+++.|++.. . ....+|..++.+++|++|+|++|.+.. |..+.++++|++|+|++|.+. .++..+.+
T Consensus 75 l~~~~~~~l~~L~L~~--n--~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~ 148 (328)
T 4fcg_A 75 LEDATQPGRVALELRS--V--PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIAS 148 (328)
T ss_dssp HHHHTSTTCCEEEEES--S--CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGG
T ss_pred HhcccccceeEEEccC--C--CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhc
Confidence 3344446899999987 2 234889999999999999999999887 777899999999999999885 35556889
Q ss_pred CcCccEEEEeecCCCceeec-----------ccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCC
Q 009796 207 CRVLEDLSFFYCFGLKRLRI-----------SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAEC 273 (525)
Q Consensus 207 c~~Le~L~L~~c~~l~~l~i-----------~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l 273 (525)
+++|++|++++|.....++. .++++|+.|++++|. ..++.....+++|++|++++|. ...+..++.+
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 99999999999877555432 126777777777775 2222112245666666666666 3334456666
Q ss_pred CCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCC
Q 009796 274 PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI 353 (525)
Q Consensus 274 ~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~ 353 (525)
++|+.|++++|.+.+. ++..+.++++|++|+|++|...+.+... ....++|+.|+++++..
T Consensus 229 ~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~------------------~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 229 PKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLD------------------IHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp TTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTT------------------GGGCTTCCEEECTTCTT
T ss_pred CCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchh------------------hhcCCCCCEEeCCCCCc
Confidence 6666666666665553 3344556666666666665433222111 12334555555555432
Q ss_pred ----CcccccCCCCceEEEE
Q 009796 354 ----PIVSTNAPCPLNVLFS 369 (525)
Q Consensus 354 ----~~~~~~~~~L~~l~l~ 369 (525)
|..+.++++|+.+.+.
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECC
T ss_pred hhhccHHHhhccCceEEeCC
Confidence 4455567777777765
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.71 E-value=5.8e-18 Score=186.82 Aligned_cols=271 Identities=16% Similarity=0.177 Sum_probs=148.2
Q ss_pred cCCccccCCC-CccEEEecCCcCCC--CCCCCC--CCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--e
Q 009796 152 ALPQTIFSAK-LLTSLKLFGCKLEQ--PSHCAN--LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--L 224 (525)
Q Consensus 152 ~lp~~l~~~~-~L~~L~L~~~~l~~--~~~~~~--l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l 224 (525)
.+|..+..++ +|++|++++|.+.+ +..... +++|++|++++|.+++. ++..+.++++|++|++++|..... -
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccH
Confidence 4455554444 56666666665543 233332 56666666666665321 333456667777777766643221 2
Q ss_pred ecccCCCccEEEEeeec-c-ccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCC
Q 009796 225 RISEAHKLKSLILRFTY-Q-ELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPL 300 (525)
Q Consensus 225 ~i~~l~~L~~L~l~~c~-~-~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~ 300 (525)
.+..+++|+.|++++|. . .+......+++|++|++++|. +..+..++.+++|+.|++++|.+++. ++..+.++++
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~ 515 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLEN 515 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHHhcCCC
Confidence 23455667777776665 1 111112245667777776666 34455566667777777766666653 3444556666
Q ss_pred CcEEEecCccchh---HhhhcCcccceEccccccchhhh-----------------------------------------
Q 009796 301 LEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI----------------------------------------- 336 (525)
Q Consensus 301 Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~L~~l----------------------------------------- 336 (525)
|+.|+|+++.... .....+++|+.|++++++-...+
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 7777776664321 11223456666666553210000
Q ss_pred --------------------------------cccCCCcceEEEecCCC----CcccccCCCCceEEEEeeecCChhccc
Q 009796 337 --------------------------------NVDAPNLVSFDFEDNPI----PIVSTNAPCPLNVLFSNFGDIDTHWYL 380 (525)
Q Consensus 337 --------------------------------~~~~p~L~~l~~~g~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~ 380 (525)
....++|+.++++++.+ |..++++++|+.+++++ +.+ .+
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~-N~l----~g 670 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH-NDI----SG 670 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS-SCC----CS
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC-Ccc----CC
Confidence 01124566666666543 34555677777777763 222 22
Q ss_pred cHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccC
Q 009796 381 NLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMD 437 (525)
Q Consensus 381 ~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 437 (525)
.++.-+.++++|+.|+|++|...+. +|+ .+..+..|++|+|..|.+.++
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~--ip~------~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGR--IPQ------AMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEC--CCG------GGGGCCCCSEEECCSSEEEEE
T ss_pred CCChHHhCCCCCCEEECCCCcccCc--CCh------HHhCCCCCCEEECcCCccccc
Confidence 3444556777777777777766655 441 344567777777777655554
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.71 E-value=1.1e-17 Score=184.66 Aligned_cols=283 Identities=14% Similarity=0.025 Sum_probs=175.8
Q ss_pred cCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796 158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (525)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 236 (525)
..+++|++|+|++|.+.. .+.+.++++|++|+|++|.+++ .++..+..+++|++|++++|......+...+++|+.|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 578899999999998877 4448889999999999998853 25667889999999999999765444444678999999
Q ss_pred Eeeec--cccceEEEe-CCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc
Q 009796 237 LRFTY--QELESVEIA-VPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (525)
Q Consensus 237 l~~c~--~~l~~~~~~-~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~ 311 (525)
+++|. ..++..... +++|++|++++|. ...+..++.+++|+.|+++++.+++......+.++++|++|+++++..
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 99886 122222223 5899999999988 456677889999999999999887654445578889999999988753
Q ss_pred hhHhh---hcC-cccceEccccccch----hh-------------------------hcccCCCcceEEEecCCC----C
Q 009796 312 LERIM---ISS-NRLMHLEVYNCSGL----NR-------------------------INVDAPNLVSFDFEDNPI----P 354 (525)
Q Consensus 312 l~~~~---~~~-~~L~~L~l~~c~~L----~~-------------------------l~~~~p~L~~l~~~g~~~----~ 354 (525)
...+. ... ++|+.|+++++.-- .. ....+++|+.|+++++.+ |
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 21111 112 25666666653210 00 111234444444444321 2
Q ss_pred cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796 355 IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 355 ~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
..+..+++|+.++++. +.. .+..+..+..+++|++|+++.|..... +| . .+..+++|++|+|..|..
T Consensus 436 ~~l~~l~~L~~L~L~~-n~l----~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p-----~-~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWL-NML----EGEIPQELMYVKTLETLILDFNDLTGE--IP-----S-GLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp GGGGGCTTCCEEECCS-SCC----CSCCCGGGGGCTTCCEEECCSSCCCSC--CC-----G-GGGGCTTCCEEECCSSCC
T ss_pred HHHhcCCCCCEEECCC-Ccc----cCcCCHHHcCCCCceEEEecCCcccCc--CC-----H-HHhcCCCCCEEEccCCcc
Confidence 2333444455555442 111 111223344556666666665554433 22 1 344567777777777643
Q ss_pred ccCCCchhHHHHHHhHhhhccccceeec
Q 009796 435 YMDVVPSEYEILLDDLFWIFYPKNLCLS 462 (525)
Q Consensus 435 ~~~~~~~~~~~~~~~Ll~~~~l~~l~l~ 462 (525)
.+. +...+-..+.+++|.+.
T Consensus 503 ~~~--------~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 503 TGE--------IPKWIGRLENLAILKLS 522 (768)
T ss_dssp CSC--------CCGGGGGCTTCCEEECC
T ss_pred CCc--------CChHHhcCCCCCEEECC
Confidence 322 11223334567777773
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=8.6e-18 Score=175.26 Aligned_cols=280 Identities=18% Similarity=0.097 Sum_probs=171.3
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
.+++.|++.. + ......|..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+.++++|+
T Consensus 32 ~~l~~L~L~~--n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGK--N-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCS--S-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCC
T ss_pred CCCcEEECCC--C-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCC
Confidence 3567777654 1 1111224456677888888888887766 55677788888888888776321 122356778888
Q ss_pred EEEEeecCCCce--eecccCCCccEEEEeeeccccceE---E-EeCCCccEEEecccc-c-cceeeccCCCCccEEEeeC
Q 009796 212 DLSFFYCFGLKR--LRISEAHKLKSLILRFTYQELESV---E-IAVPSLQQLELSFSR-V-PRLLDVAECPHLRKLVLFL 283 (525)
Q Consensus 212 ~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~~~l~~~---~-~~~~~L~~L~l~~~~-~-~~~~~~~~l~~L~~L~L~~ 283 (525)
+|+|++|..... ..+..+++|+.|++++|. +..+ . ..+++|++|+++++. . .....+..+++|+.|++.+
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDND--LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTT--CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCc--cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 888877754222 124456788888887774 2222 1 246788888888776 2 2223467778888888888
Q ss_pred CCCChhhhhhhhcCCCCCcEEEecCccchhHhhh---cCcccceEccccccchhhh----cccCCCcceEEEecCCCC--
Q 009796 284 PHFNDQEFHPLISKFPLLEDLSIISLETLERIMI---SSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPIP-- 354 (525)
Q Consensus 284 ~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~---~~~~L~~L~l~~c~~L~~l----~~~~p~L~~l~~~g~~~~-- 354 (525)
+.+++. ....+.++++|+.|+++++..+..+.. ...+|+.|+++++. +..+ ....++|+.|+++++.+.
T Consensus 186 n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 186 LNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp CCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred CcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCcc
Confidence 777653 334466778888888887655433322 23467777777653 2221 235677888888777653
Q ss_pred --cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796 355 --IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (525)
Q Consensus 355 --~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~ 432 (525)
..+..+++|+.++++. +.+.. .....+..+++|+.|+|+.|.... +|+. .+..+++|+.|.|.+|
T Consensus 264 ~~~~~~~l~~L~~L~L~~-n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~---~~~~-----~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVG-GQLAV----VEPYAFRGLNYLRVLNVSGNQLTT---LEES-----VFHSVGNLETLILDSN 330 (477)
T ss_dssp CTTSCTTCTTCCEEECCS-SCCSE----ECTTTBTTCTTCCEEECCSSCCSC---CCGG-----GBSCGGGCCEEECCSS
T ss_pred ChhhccccccCCEEECCC-Cccce----ECHHHhcCcccCCEEECCCCcCce---eCHh-----HcCCCcccCEEEccCC
Confidence 2344577788888764 22222 122334567788888887665543 2222 2344677888888776
Q ss_pred ee
Q 009796 433 SL 434 (525)
Q Consensus 433 ~~ 434 (525)
.+
T Consensus 331 ~l 332 (477)
T 2id5_A 331 PL 332 (477)
T ss_dssp CE
T ss_pred Cc
Confidence 44
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=9.4e-17 Score=166.87 Aligned_cols=164 Identities=17% Similarity=0.237 Sum_probs=74.1
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.++++|+++. + ....+|. +..+++|++|++++|.+.....+.++++|++|++++|.+.+- .. +..+++|++|
T Consensus 68 ~~L~~L~Ls~--n--~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQINFSN--N--QLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRL 139 (466)
T ss_dssp TTCCEEECCS--S--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEE
T ss_pred cCCCEEECCC--C--ccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEE
Confidence 3556665543 1 1222332 445556666666666555522255566666666665555221 11 4555666666
Q ss_pred EEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhh
Q 009796 214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHP 293 (525)
Q Consensus 214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 293 (525)
++++|.....-.+..+++|+.|++.++...+.. ...+++|+.|+++++.......+..+++|+.|+++++.+++.. .
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~ 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--P 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccc--c
Confidence 665553211112334445555554322211111 1134555555555554111123445555555555555544421 1
Q ss_pred hhcCCCCCcEEEecCc
Q 009796 294 LISKFPLLEDLSIISL 309 (525)
Q Consensus 294 ll~~~~~Le~L~L~~c 309 (525)
+..+++|+.|+++++
T Consensus 217 -~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 217 -LGILTNLDELSLNGN 231 (466)
T ss_dssp -GGGCTTCCEEECCSS
T ss_pred -ccccCCCCEEECCCC
Confidence 334455555555544
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=4.4e-17 Score=168.73 Aligned_cols=285 Identities=14% Similarity=0.065 Sum_probs=166.4
Q ss_pred cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHH-HHHhCCcCccEEEEeecCCCceee---cccC
Q 009796 156 TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQ-SLVRECRVLEDLSFFYCFGLKRLR---ISEA 229 (525)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~c~~Le~L~L~~c~~l~~l~---i~~l 229 (525)
.+..+++|++|+|++|.+.. +..+.++++|++|+|++|.+++..+. ..+..+++|++|++++|....... +.++
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 44556666666666666554 44556666666666666665432111 124556666666666665322211 3455
Q ss_pred CCccEEEEeeec-cccceEE---EeCCCccEEEecccc-ccc-e--------eeccCCCCccEEEeeCCCCChhhhhhhh
Q 009796 230 HKLKSLILRFTY-QELESVE---IAVPSLQQLELSFSR-VPR-L--------LDVAECPHLRKLVLFLPHFNDQEFHPLI 295 (525)
Q Consensus 230 ~~L~~L~l~~c~-~~l~~~~---~~~~~L~~L~l~~~~-~~~-~--------~~~~~l~~L~~L~L~~~~~~~~~~~~ll 295 (525)
++|+.|++++|. .....-. ...++|+.|+++++. ... . ..+..+++|+.|+++++.+++.....+.
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 666666666664 1111000 122456666666655 111 0 0123456788888888888775333322
Q ss_pred --cCCCCCcEEEecCccchhH---------------hhhcCcccceEccccccch---hhhcccCCCcceEEEecCCCC-
Q 009796 296 --SKFPLLEDLSIISLETLER---------------IMISSNRLMHLEVYNCSGL---NRINVDAPNLVSFDFEDNPIP- 354 (525)
Q Consensus 296 --~~~~~Le~L~L~~c~~l~~---------------~~~~~~~L~~L~l~~c~~L---~~l~~~~p~L~~l~~~g~~~~- 354 (525)
...++|+.|+++++..... .....++|+.|+++++.-- .......++|+.|.++++.+.
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 2237788888877632111 1112357888888875421 222245688999999888764
Q ss_pred ---cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEE
Q 009796 355 ---IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMES 431 (525)
Q Consensus 355 ---~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~ 431 (525)
..+.++++|+.++++. +.+. ......+..+++|++|+++.|..... .| . .+..+++|++|+|.+
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~-N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~-----~-~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQ-NFLG----SIDSRMFENLDKLEVLDLSYNHIRAL--GD-----Q-SFLGLPNLKELALDT 380 (455)
T ss_dssp ECTTTTTTCTTCCEEECCS-SCCC----EECGGGGTTCTTCCEEECCSSCCCEE--CT-----T-TTTTCTTCCEEECCS
T ss_pred cChhHhcCcccCCEEECCC-CccC----CcChhHhcCcccCCEEECCCCccccc--Ch-----h-hccccccccEEECCC
Confidence 3455788999999985 3222 22344567899999999998877654 23 2 466789999999998
Q ss_pred eeeccCCCchhHHHHHHhH-hhhccccceeec
Q 009796 432 FSLYMDVVPSEYEILLDDL-FWIFYPKNLCLS 462 (525)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~L-l~~~~l~~l~l~ 462 (525)
|.+.. +.... -..+.++++.+.
T Consensus 381 N~l~~---------~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 381 NQLKS---------VPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp SCCSC---------CCTTTTTTCTTCCEEECC
T ss_pred Ccccc---------CCHhHhccCCcccEEEcc
Confidence 84432 11222 234578999885
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=172.80 Aligned_cols=285 Identities=16% Similarity=0.058 Sum_probs=206.7
Q ss_pred CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR- 225 (525)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~- 225 (525)
....+|..+. ++++.|+|++|.+.. +..+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.. ..+.
T Consensus 22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~ 97 (477)
T 2id5_A 22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRL-KLIPL 97 (477)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCC-CSCCT
T ss_pred CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcC-CccCc
Confidence 3445666553 589999999999887 56788999999999999987431 234478899999999999863 3332
Q ss_pred --cccCCCccEEEEeeeccccceE----EEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcC
Q 009796 226 --ISEAHKLKSLILRFTYQELESV----EIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISK 297 (525)
Q Consensus 226 --i~~l~~L~~L~l~~c~~~l~~~----~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~ 297 (525)
+.++++|+.|++++|. +..+ ...+++|++|+++++. ...+..++.+++|+.|+++++.+++. ....+.+
T Consensus 98 ~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~ 174 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENK--IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSH 174 (477)
T ss_dssp TSSTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTT
T ss_pred ccccCCCCCCEEECCCCc--cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcc
Confidence 4568999999999985 3222 2258999999999988 33345788999999999999998863 4456789
Q ss_pred CCCCcEEEecCccchhH---hhhcCcccceEccccccchhhhc---ccCCCcceEEEecCCCC----cccccCCCCceEE
Q 009796 298 FPLLEDLSIISLETLER---IMISSNRLMHLEVYNCSGLNRIN---VDAPNLVSFDFEDNPIP----IVSTNAPCPLNVL 367 (525)
Q Consensus 298 ~~~Le~L~L~~c~~l~~---~~~~~~~L~~L~l~~c~~L~~l~---~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~ 367 (525)
+++|+.|++.++..... ....+++|+.|+++++..+..+. ...++|+.|.++++.+. ..+..+++|+.++
T Consensus 175 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEE
T ss_pred cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeE
Confidence 99999999998753211 12235789999999877654332 23458999999998764 2345789999999
Q ss_pred EEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHH
Q 009796 368 FSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILL 447 (525)
Q Consensus 368 l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 447 (525)
++. +.+... ....+..+++|+.|.|+.|..... .| . .+..+++|++|+|..|.+.. +.
T Consensus 255 Ls~-n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~--~~-----~-~~~~l~~L~~L~L~~N~l~~---------~~ 312 (477)
T 2id5_A 255 LSY-NPISTI----EGSMLHELLRLQEIQLVGGQLAVV--EP-----Y-AFRGLNYLRVLNVSGNQLTT---------LE 312 (477)
T ss_dssp CCS-SCCCEE----CTTSCTTCTTCCEEECCSSCCSEE--CT-----T-TBTTCTTCCEEECCSSCCSC---------CC
T ss_pred CCC-CcCCcc----ChhhccccccCCEEECCCCccceE--CH-----H-HhcCcccCCEEECCCCcCce---------eC
Confidence 985 333222 223457889999999998876654 23 1 45678999999999884432 11
Q ss_pred HhH-hhhccccceeec
Q 009796 448 DDL-FWIFYPKNLCLS 462 (525)
Q Consensus 448 ~~L-l~~~~l~~l~l~ 462 (525)
... -.++.+++|.+.
T Consensus 313 ~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 313 ESVFHSVGNLETLILD 328 (477)
T ss_dssp GGGBSCGGGCCEEECC
T ss_pred HhHcCCCcccCEEEcc
Confidence 122 234578999884
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.68 E-value=3e-16 Score=163.05 Aligned_cols=270 Identities=14% Similarity=0.150 Sum_probs=172.7
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.++++|++.. + ....++. +..+++|++|++++|.+...+.+.++++|++|++++|.+.+- . .+..+++|++|
T Consensus 90 ~~L~~L~l~~--n--~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L 161 (466)
T 1o6v_A 90 TKLVDILMNN--N--QIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQL 161 (466)
T ss_dssp TTCCEEECCS--S--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEE
T ss_pred ccCCEEECCC--C--ccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC--h-hhccCCcccEe
Confidence 5899998865 2 2334444 778999999999999988744488999999999999998432 2 26788999999
Q ss_pred EEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhh
Q 009796 214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFH 292 (525)
Q Consensus 214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 292 (525)
++.++. .....+..+++|+.|++++|. ..+.. ...+++|++|+++++.......++.+++|+.|+++++.+++.
T Consensus 162 ~l~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--- 236 (466)
T 1o6v_A 162 SFGNQV-TDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--- 236 (466)
T ss_dssp EEEESC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---
T ss_pred ecCCcc-cCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---
Confidence 986432 222335667888888888885 22221 125678888888887722222367778888888888777652
Q ss_pred hhhcCCCCCcEEEecCccchhHh-hhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC--cccccCCCCceEE
Q 009796 293 PLISKFPLLEDLSIISLETLERI-MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVL 367 (525)
Q Consensus 293 ~ll~~~~~Le~L~L~~c~~l~~~-~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~--~~~~~~~~L~~l~ 367 (525)
..+..+++|+.|+++++...... ...+++|+.|+++++. .+.. ....++|+.|.++++.+. ..+..+++|+.++
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 315 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLT 315 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEE
Confidence 23567778888888776432111 2235677777777643 2222 235567777777776553 2344577777777
Q ss_pred EEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796 368 FSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 368 l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
++. +.+... .. +..+++|+.|.++.|..... + .+..+++|+.|.+..|..
T Consensus 316 L~~-n~l~~~----~~--~~~l~~L~~L~l~~n~l~~~---~-------~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 316 LYF-NNISDI----SP--VSSLTKLQRLFFYNNKVSDV---S-------SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CCS-SCCSCC----GG--GGGCTTCCEEECCSSCCCCC---G-------GGTTCTTCCEEECCSSCC
T ss_pred CcC-CcCCCc----hh--hccCccCCEeECCCCccCCc---h-------hhccCCCCCEEeCCCCcc
Confidence 764 222211 11 45677777777776544332 1 344566777777776643
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=5.8e-16 Score=164.26 Aligned_cols=180 Identities=13% Similarity=0.074 Sum_probs=87.1
Q ss_pred CCCccEEEeeCCCCChhhhh--hhhcCCCCCcEEEecCccch--h---HhhhcCcccceEccccccchhhhc---ccCCC
Q 009796 273 CPHLRKLVLFLPHFNDQEFH--PLISKFPLLEDLSIISLETL--E---RIMISSNRLMHLEVYNCSGLNRIN---VDAPN 342 (525)
Q Consensus 273 l~~L~~L~L~~~~~~~~~~~--~ll~~~~~Le~L~L~~c~~l--~---~~~~~~~~L~~L~l~~c~~L~~l~---~~~p~ 342 (525)
+++|+.|+++++.+++.... ..+..+++|+.|+++++..- . .....+++|+.|+++++. +..+. ...++
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~ 411 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEK 411 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTT
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhccccc
Confidence 44455555555554443221 11344455555555544321 0 112223455555555431 22211 12345
Q ss_pred cceEEEecCCCC-cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCC
Q 009796 343 LVSFDFEDNPIP-IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQ 421 (525)
Q Consensus 343 L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~ 421 (525)
|+.|.++++.+. +...-.++|+.++++. +.+. .++..+++|++|+++.|... . +| ....+
T Consensus 412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~-N~l~--------~~~~~l~~L~~L~Ls~N~l~--~-ip-------~~~~l 472 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSN-NNLD--------SFSLFLPRLQELYISRNKLK--T-LP-------DASLF 472 (549)
T ss_dssp CCEEECTTSCCSCCCTTSCTTCSEEECCS-SCCS--------CCCCCCTTCCEEECCSSCCS--S-CC-------CGGGC
T ss_pred ccEEECCCCCcccccchhcCCceEEECCC-CChh--------hhcccCChhcEEECCCCccC--c-CC-------CcccC
Confidence 555555555432 1111124566666653 2221 12357889999999987665 2 55 23457
Q ss_pred cccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC-CCCchhhHHHHHHHhh
Q 009796 422 VESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE-NWRYRPFVMWFYDHLQ 480 (525)
Q Consensus 422 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~~~-~~~~~~~~~~~~~~~~ 480 (525)
++|++|+|..|.+.+.. ...+-..+.++++.+..- .....+..+++..++.
T Consensus 473 ~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~ 524 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVP--------DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 524 (549)
T ss_dssp TTCCEEECCSSCCCCCC--------TTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred ccCCEEecCCCccCCcC--------HHHHhcCcccCEEEecCCCccCCCccHHHHHHHHH
Confidence 89999999988543321 112334457888888433 1123444555544543
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=5.5e-17 Score=174.30 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=46.4
Q ss_pred ccCCCccEEEEeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhh-hhhhhcCCCCCcEE
Q 009796 227 SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQE-FHPLISKFPLLEDL 304 (525)
Q Consensus 227 ~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~ll~~~~~Le~L 304 (525)
..+++|+.|++.+|. ..++.+ .+++|++|+++++.......++.+++|+.|+++++.+++.. ....+.++++|++|
T Consensus 304 ~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred cccccCCEEEcccccCcccccC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 345577777777776 333332 66777777777775222335556666777776666655421 12334555566666
Q ss_pred EecCcc
Q 009796 305 SIISLE 310 (525)
Q Consensus 305 ~L~~c~ 310 (525)
+++++.
T Consensus 382 ~L~~n~ 387 (606)
T 3vq2_A 382 DLSFNG 387 (606)
T ss_dssp ECCSCS
T ss_pred ECCCCc
Confidence 665543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=1e-16 Score=172.94 Aligned_cols=170 Identities=10% Similarity=0.124 Sum_probs=120.6
Q ss_pred cCCeEEEEEeecCCCCccc-----------------CCcccc--CCCCccEEEecCCcCCC--CCCCCCCCcccEEEece
Q 009796 134 NGVKELDFEVITDKNSVNA-----------------LPQTIF--SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDE 192 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~-----------------lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~ 192 (525)
.++++|+++. +. .... +|..+. .+++|++|+|++|.+.+ |..+.++++|++|+|++
T Consensus 206 ~~L~~L~Ls~--n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 206 TKLRQFYMGN--SP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp TTCCEEEEES--CC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred cCCCEEECcC--Cc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 5899999987 22 2222 899998 99999999999998877 78889999999999999
Q ss_pred ee-echHHHHHHHhC------CcCccEEEEeecCCCcee----ecccCCCccEEEEeeec-c-ccceEEEeCCCccEEEe
Q 009796 193 VY-VNDQMVQSLVRE------CRVLEDLSFFYCFGLKRL----RISEAHKLKSLILRFTY-Q-ELESVEIAVPSLQQLEL 259 (525)
Q Consensus 193 ~~-~~~~~l~~ll~~------c~~Le~L~L~~c~~l~~l----~i~~l~~L~~L~l~~c~-~-~l~~~~~~~~~L~~L~l 259 (525)
|. ++...++..+.. +++|++|++++|... .+ .+..+++|+.|++++|. . .++ ....+++|+.|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 98 665345554544 499999999998654 33 24577889999998886 2 333 2225677788888
Q ss_pred cccc-ccceeeccCCCC-ccEEEeeCCCCChhhhhhhhcCC--CCCcEEEecCcc
Q 009796 260 SFSR-VPRLLDVAECPH-LRKLVLFLPHFNDQEFHPLISKF--PLLEDLSIISLE 310 (525)
Q Consensus 260 ~~~~-~~~~~~~~~l~~-L~~L~L~~~~~~~~~~~~ll~~~--~~Le~L~L~~c~ 310 (525)
+++. ...+..++.+++ |+.|+++++.++. ++..+... ++|+.|+++++.
T Consensus 361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CSSEEEECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCccccccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCc
Confidence 7776 444455667777 7777777777663 33333332 256666666654
No 17
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=8.5e-17 Score=172.29 Aligned_cols=341 Identities=15% Similarity=0.064 Sum_probs=206.9
Q ss_pred ccceEEEEEeeccc------cCCchhHHHHHHHHHH--cCCeEEEEEeecCCCCcccCCccccC-CCC-ccEEEecCCc-
Q 009796 104 PMQKLRISVSLLEV------KESSPLFDKWVELAME--NGVKELDFEVITDKNSVNALPQTIFS-AKL-LTSLKLFGCK- 172 (525)
Q Consensus 104 ~l~~l~l~~~~~~~------~~~~~~~~~wl~~~~~--~~l~~L~l~~~~~~~~~~~lp~~l~~-~~~-L~~L~L~~~~- 172 (525)
.++++.+.....-. .........|+..... +++++|++.. +.. ....+..+.. +++ |++|+|++|.
T Consensus 74 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~--~~i-~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRR--MIV-SDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEES--CBC-CHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeec--cEe-cHHHHHHHHHhccccCcEEECcCCCC
Confidence 47777775421100 0122334556665543 4788888875 211 1111222222 344 8888888875
Q ss_pred CCC---CCCCCCCCcccEEEeceeeechH---HHHHHHhCCcCccEEEEeecCCC--c--eee--cccCCCccEEEEeee
Q 009796 173 LEQ---PSHCANLQSLKKLSLDEVYVNDQ---MVQSLVRECRVLEDLSFFYCFGL--K--RLR--ISEAHKLKSLILRFT 240 (525)
Q Consensus 173 l~~---~~~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~c~~Le~L~L~~c~~l--~--~l~--i~~l~~L~~L~l~~c 240 (525)
+.. .....+|++|++|+|++|.+++. .+..+..++++|++|++++|..- . .+. +.++++|+.|++.+|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 221 22334688888888888877332 26677788888888888777542 1 111 235788999998888
Q ss_pred c-cccceEEEeCCCccEEEecccc-----ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchh-
Q 009796 241 Y-QELESVEIAVPSLQQLELSFSR-----VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLE- 313 (525)
Q Consensus 241 ~-~~l~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~- 313 (525)
. ..+......+++|++|.+++.. ......++.+++|+.|.+..+. ...+..++..+++|++|+|++|. +.
T Consensus 231 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~-l~~ 307 (592)
T 3ogk_B 231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYAL-LET 307 (592)
T ss_dssp BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCC-CCH
T ss_pred cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCc-CCH
Confidence 6 3344334467889998887543 1233466788899999887643 33367778899999999999987 32
Q ss_pred ----HhhhcCcccceEcccccc---chhhhcccCCCcceEEEe-c---------CC-CC----cc-cccCCCCceEEEEe
Q 009796 314 ----RIMISSNRLMHLEVYNCS---GLNRINVDAPNLVSFDFE-D---------NP-IP----IV-STNAPCPLNVLFSN 370 (525)
Q Consensus 314 ----~~~~~~~~L~~L~l~~c~---~L~~l~~~~p~L~~l~~~-g---------~~-~~----~~-~~~~~~L~~l~l~~ 370 (525)
.+...+++|+.|++..+- .+..+...+++|+.|++. | +. +. .. ...+++|+.+++..
T Consensus 308 ~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 223457899999998532 234454568999999999 3 32 22 11 12489999999953
Q ss_pred eecCChhccccHHHHHHhccccceEEEEEE----eeeeeeeecccc-ccCCCCCCCcccceEEEEEeeeccCCCchhHHH
Q 009796 371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLN----YKQVLFNIDEFR-SCHPSLPLQVESLSLFMESFSLYMDVVPSEYEI 445 (525)
Q Consensus 371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~----~~~~~~~lp~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 445 (525)
..+.. ..+..+..++++|++|+++.+ .... .|.+. ... .+..+++|++|.|..+.-. .. ..+
T Consensus 388 -~~l~~---~~~~~l~~~~~~L~~L~l~~~~~~n~l~~---~p~~~~~~~-~~~~~~~L~~L~L~~~~~~--l~---~~~ 454 (592)
T 3ogk_B 388 -SDITN---ESLESIGTYLKNLCDFRLVLLDREERITD---LPLDNGVRS-LLIGCKKLRRFAFYLRQGG--LT---DLG 454 (592)
T ss_dssp -SCCCH---HHHHHHHHHCCSCCEEEEEECSCCSCCSS---CCCHHHHHH-HHHHCTTCCEEEEECCGGG--CC---HHH
T ss_pred -CCccH---HHHHHHHhhCCCCcEEEEeecCCCccccC---chHHHHHHH-HHHhCCCCCEEEEecCCCC--cc---HHH
Confidence 33333 234455567999999999843 2221 11000 000 1334789999999764100 11 222
Q ss_pred HHHhHhhhccccceeecC
Q 009796 446 LLDDLFWIFYPKNLCLSP 463 (525)
Q Consensus 446 ~~~~Ll~~~~l~~l~l~~ 463 (525)
+....-.++.+++|.+..
T Consensus 455 ~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHSCTTCCEEEECS
T ss_pred HHHHHHhCccceEeeccC
Confidence 222222356799999953
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=1.3e-16 Score=171.39 Aligned_cols=148 Identities=24% Similarity=0.270 Sum_probs=61.7
Q ss_pred CCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccE
Q 009796 159 SAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKS 234 (525)
Q Consensus 159 ~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~ 234 (525)
.+++|++|++++|.+.. |..+..+++|++|++++|.+... .+..+..+++|++|++++|.....+. +..+++|+.
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 34455555555554444 34444445555555555444211 11223444555555554443221111 223444555
Q ss_pred EEEeeeccccceEE------EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEe
Q 009796 235 LILRFTYQELESVE------IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI 306 (525)
Q Consensus 235 L~l~~c~~~l~~~~------~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L 306 (525)
|++++|. +..+. ..+++|++|+++++. ...+..++.+++|+.|+++++.+++......+.++++|+.|++
T Consensus 355 L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 355 LDLSHDD--IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp EECCSSC--CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred EECCCCc--cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 5554443 11111 124444555544444 1122234444445555554444433222223344444555554
Q ss_pred cCc
Q 009796 307 ISL 309 (525)
Q Consensus 307 ~~c 309 (525)
+++
T Consensus 433 ~~n 435 (606)
T 3t6q_A 433 SHS 435 (606)
T ss_dssp TTC
T ss_pred CCC
Confidence 444
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=1.5e-16 Score=170.97 Aligned_cols=257 Identities=15% Similarity=0.089 Sum_probs=185.0
Q ss_pred ccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796 157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (525)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 236 (525)
+..+++|+.|+++++.+...+.+..+++|++|++++|.+. .++.+ .+++|++|++++|.......+..+++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 5567899999999998877337788899999999999872 23433 8899999999999777777777889999999
Q ss_pred EeeeccccceE------EEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796 237 LRFTYQELESV------EIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL 309 (525)
Q Consensus 237 l~~c~~~l~~~------~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c 309 (525)
+++|. +..+ ...+++|++|++++|. ...+..+..+++|+.|+++++.+++......+.++++|+.|+++++
T Consensus 357 ls~n~--l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 357 LSRNA--LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSSC--EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcCCc--cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 99885 2222 1267899999999988 4445678889999999999988877533356788999999999988
Q ss_pred cchhH---hhhcCcccceEccccccchh----hhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhc
Q 009796 310 ETLER---IMISSNRLMHLEVYNCSGLN----RINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHW 378 (525)
Q Consensus 310 ~~l~~---~~~~~~~L~~L~l~~c~~L~----~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~ 378 (525)
..... ....+++|+.|+++++.--. ......++|+.|.++++.+. ..+..+++|+.++++. +.+..
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~-- 511 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH-NNLLF-- 511 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSC--
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC-CcCCC--
Confidence 64322 22345788899888864221 12235678888888887653 3445678888888874 22222
Q ss_pred cccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCc-ccceEEEEEee
Q 009796 379 YLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQV-ESLSLFMESFS 433 (525)
Q Consensus 379 ~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~-~L~~L~L~~~~ 433 (525)
..+..+..+++|++|+++.|.... +|+ .+..++ +|++|.+.+|.
T Consensus 512 --~~~~~~~~l~~L~~L~l~~N~l~~---~p~------~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 512 --LDSSHYNQLYSLSTLDCSFNRIET---SKG------ILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp --EEGGGTTTCTTCCEEECTTSCCCC---EES------CGGGSCTTCCEEECCSCC
T ss_pred --cCHHHccCCCcCCEEECCCCcCcc---cCH------hHhhhcccCcEEEccCCC
Confidence 233455778888888888776652 442 234454 58888888873
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.4e-16 Score=173.86 Aligned_cols=171 Identities=12% Similarity=0.095 Sum_probs=121.5
Q ss_pred cCCeEEEEEeecCCCCcc----------------cCCcccc--CCCCccEEEecCCcCCC--CCCCCCCCcccEEEecee
Q 009796 134 NGVKELDFEVITDKNSVN----------------ALPQTIF--SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEV 193 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~ 193 (525)
.+++.|+++. +..... .+|..+. .+++|++|+|++|.+.+ |..+.++++|++|+|++|
T Consensus 448 ~~L~~L~Ls~--N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 448 TKLQIIYFAN--SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp TTCCEEEEES--CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCEEECcC--CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 4899999987 222210 2888887 89999999999998776 778899999999999999
Q ss_pred e-echHHHHHHHh-------CCcCccEEEEeecCCCceee----cccCCCccEEEEeeec-cccceEEEeCCCccEEEec
Q 009796 194 Y-VNDQMVQSLVR-------ECRVLEDLSFFYCFGLKRLR----ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS 260 (525)
Q Consensus 194 ~-~~~~~l~~ll~-------~c~~Le~L~L~~c~~l~~l~----i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~ 260 (525)
. ++...++..+. .+|+|++|+|++|... .++ +..+++|+.|++++|. ..++ ....+++|+.|+++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence 8 65423444344 4559999999998754 432 4567889999998886 3233 11257788888888
Q ss_pred ccc-ccceeeccCCCC-ccEEEeeCCCCChhhhhhhhcCCC--CCcEEEecCcc
Q 009796 261 FSR-VPRLLDVAECPH-LRKLVLFLPHFNDQEFHPLISKFP--LLEDLSIISLE 310 (525)
Q Consensus 261 ~~~-~~~~~~~~~l~~-L~~L~L~~~~~~~~~~~~ll~~~~--~Le~L~L~~c~ 310 (525)
+|. ...+..+..+++ |+.|+|++|.++. ++..+...+ +|+.|+|+++.
T Consensus 604 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp SSCCSCCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSC
T ss_pred CCccccchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCc
Confidence 887 545556777787 8888888887763 344444433 36666666654
No 21
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=3.4e-17 Score=169.79 Aligned_cols=320 Identities=16% Similarity=0.128 Sum_probs=202.5
Q ss_pred HHHcCCeEEEEEeecCCCCc---ccCCccccCCCCccEEEecCCcCCC--C-CCCCCCC----cccEEEeceeeech---
Q 009796 131 AMENGVKELDFEVITDKNSV---NALPQTIFSAKLLTSLKLFGCKLEQ--P-SHCANLQ----SLKKLSLDEVYVND--- 197 (525)
Q Consensus 131 ~~~~~l~~L~l~~~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~l~~--~-~~~~~l~----~L~~L~L~~~~~~~--- 197 (525)
...+++++|++.. +.... ..++..+..+++|++|+|++|.+.. + .....++ +|++|+|++|.+++
T Consensus 25 ~~~~~L~~L~L~~--~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 25 PLLQQCQVVRLDD--CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHTTCSEEEEES--SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred hhcCCccEEEccC--CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 3446899999886 22221 2456667778999999999988754 1 1223344 79999999998854
Q ss_pred HHHHHHHhCCcCccEEEEeecCCCce----ee---cccCCCccEEEEeeec-cc-----cceEEEeCCCccEEEecccc-
Q 009796 198 QMVQSLVRECRVLEDLSFFYCFGLKR----LR---ISEAHKLKSLILRFTY-QE-----LESVEIAVPSLQQLELSFSR- 263 (525)
Q Consensus 198 ~~l~~ll~~c~~Le~L~L~~c~~l~~----l~---i~~l~~L~~L~l~~c~-~~-----l~~~~~~~~~L~~L~l~~~~- 263 (525)
..+...+..+++|++|++++|..... +. ....++|++|++++|. .. +......+++|++|+++++.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 35667788899999999998874211 10 1123579999998886 11 11111246899999999887
Q ss_pred -ccceeecc-----CCCCccEEEeeCCCCChhh---hhhhhcCCCCCcEEEecCccchhHh---------hhcCcccceE
Q 009796 264 -VPRLLDVA-----ECPHLRKLVLFLPHFNDQE---FHPLISKFPLLEDLSIISLETLERI---------MISSNRLMHL 325 (525)
Q Consensus 264 -~~~~~~~~-----~l~~L~~L~L~~~~~~~~~---~~~ll~~~~~Le~L~L~~c~~l~~~---------~~~~~~L~~L 325 (525)
......+. ..++|+.|+++++.+++.. +...+..+++|++|+++++.. +.. ...+++|++|
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL-GDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC-ChHHHHHHHHHHhcCCCCceEE
Confidence 11111121 3568999999988887753 455567789999999998752 221 1135789999
Q ss_pred ccccccchh--------hhcccCCCcceEEEecCCCC----cccc-----cCCCCceEEEEeeecCChhccccHHHHHHh
Q 009796 326 EVYNCSGLN--------RINVDAPNLVSFDFEDNPIP----IVST-----NAPCPLNVLFSNFGDIDTHWYLNLMEFIGA 388 (525)
Q Consensus 326 ~l~~c~~L~--------~l~~~~p~L~~l~~~g~~~~----~~~~-----~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~ 388 (525)
++++|. +. ......++|+.|+++++.+. ..+. +.++|+.++++. +.+.......+...+..
T Consensus 262 ~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 262 WIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS-CSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp ECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHHHHHHHHHH
T ss_pred ECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC-CCCchHHHHHHHHHHhh
Confidence 998873 21 11224688999999888653 0111 236889999875 33443333345666778
Q ss_pred ccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeec
Q 009796 389 FNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLS 462 (525)
Q Consensus 389 l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~ 462 (525)
+++|++|+++.|...... + ..+... .....++|++|.|.+|.. .......+...+-.++.++++.+.
T Consensus 340 ~~~L~~L~Ls~n~i~~~~-~-~~l~~~-l~~~~~~L~~L~L~~n~i----~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAG-V-RELCQG-LGQPGSVLRVLWLADCDV----SDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp CSSCCEEECCSSBCHHHH-H-HHHHHH-HTSTTCCCCEEECTTSCC----CHHHHHHHHHHHHHCCCCCEEECC
T ss_pred CCCccEEEccCCcccccc-H-HHHHHH-HcCCCCceEEEECCCCCC----ChhhHHHHHHHHHhCCCccEEECC
Confidence 899999998877654431 1 111111 001256888888887732 222233455566666788888883
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.63 E-value=3.6e-16 Score=167.98 Aligned_cols=268 Identities=19% Similarity=0.182 Sum_probs=184.8
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
.++++|++.. .....+|..+..+++|++|++++|.+.. +..+..+++|++|++++|.+........+..+++|+
T Consensus 278 ~~L~~L~l~~----n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 278 SGLQELDLTA----THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCSEEECTT----SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred cCCCEEeccC----CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 4788888765 2334788889999999999999999887 567889999999999999764222233467899999
Q ss_pred EEEEeecCCCcee----ecccCCCccEEEEeeeccccceE----EEeCCCccEEEecccc--cc-ceeeccCCCCccEEE
Q 009796 212 DLSFFYCFGLKRL----RISEAHKLKSLILRFTYQELESV----EIAVPSLQQLELSFSR--VP-RLLDVAECPHLRKLV 280 (525)
Q Consensus 212 ~L~L~~c~~l~~l----~i~~l~~L~~L~l~~c~~~l~~~----~~~~~~L~~L~l~~~~--~~-~~~~~~~l~~L~~L~ 280 (525)
+|++++|...... .+..+++|+.|++++|. +..+ ...+++|++|+++++. .. .+..++.+++|+.|+
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 9999998754332 35578999999999985 3222 1257999999999998 22 233488999999999
Q ss_pred eeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCC----Ccc
Q 009796 281 LFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI----PIV 356 (525)
Q Consensus 281 L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~----~~~ 356 (525)
++++.+++. ....+.++++|++|+++++...... .... ......++|+.|.++++.+ |..
T Consensus 432 l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~--------------~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 432 LSHSLLDIS-SEQLFDGLPALQHLNLQGNHFPKGN-IQKT--------------NSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp CTTCCCBTT-CTTTTTTCTTCCEEECTTCBCGGGE-ECSS--------------CGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred CCCCccCCc-CHHHHhCCCCCCEEECCCCCCCccc-cccc--------------hhhccCCCccEEECCCCccCccChhh
Confidence 999998764 4556788999999999997532210 0000 0001233444444444433 234
Q ss_pred cccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeecc
Q 009796 357 STNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYM 436 (525)
Q Consensus 357 ~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~ 436 (525)
+..+++|+.+++++ +.+.. .....+.++++| .|+++.|..... .| . .+..+++|+.|.|.+|....
T Consensus 496 ~~~l~~L~~L~Ls~-N~l~~----~~~~~l~~l~~L-~L~L~~N~l~~~--~~-~-----~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 496 FTSLKMMNHVDLSH-NRLTS----SSIEALSHLKGI-YLNLASNHISII--LP-S-----LLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTCTTCCEEECCS-SCCCG----GGGGGGTTCCSC-EEECCSSCCCCC--CG-G-----GHHHHHTSSEEECTTCCEEC
T ss_pred hccccCCCEEECCC-CccCc----CChhHhCccccc-EEECcCCccccc--CH-h-----hcccCCCCCEEeCCCCCccc
Confidence 55678889999874 33322 233455677788 788887766542 22 1 23457889999999885544
Q ss_pred C
Q 009796 437 D 437 (525)
Q Consensus 437 ~ 437 (525)
+
T Consensus 562 ~ 562 (606)
T 3t6q_A 562 T 562 (606)
T ss_dssp S
T ss_pred c
Confidence 4
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=3.7e-16 Score=158.49 Aligned_cols=268 Identities=15% Similarity=0.097 Sum_probs=148.1
Q ss_pred cCCeEEEEEeecCCCCcccCC-ccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
+++++|++.. + ....++ ..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++. ....++.++++|
T Consensus 69 ~~L~~L~L~~--n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L 143 (390)
T 3o6n_A 69 RQVELLNLND--L--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL 143 (390)
T ss_dssp CCCSEEECTT--S--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred ccCcEEECCC--C--cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCC
Confidence 4667666643 1 122233 345566777777777776665 3345667777777777776631 112234566777
Q ss_pred cEEEEeecCCCce--eecccCCCccEEEEeeeccccceEEE-eCCCccEEEeccccccceeeccCCCCccEEEeeCCCCC
Q 009796 211 EDLSFFYCFGLKR--LRISEAHKLKSLILRFTYQELESVEI-AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFN 287 (525)
Q Consensus 211 e~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 287 (525)
++|++++|..... -.+..+++|+.|++++|. +..+.. .+++|+.|+++++... .+...++|+.|+++++.++
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLS---TLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCCGGGCTTCSEEECCSSCCS---EEECCSSCSEEECCSSCCC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccccccccccceeeccccccc---ccCCCCcceEEECCCCeee
Confidence 7777776643221 123455677777777664 222222 3567777777666511 2234456777777777665
Q ss_pred hhhhhhhhcCCCCCcEEEecCccchhH-hhhcCcccceEccccccc--h-hhhcccCCCcceEEEecCCCC---cccccC
Q 009796 288 DQEFHPLISKFPLLEDLSIISLETLER-IMISSNRLMHLEVYNCSG--L-NRINVDAPNLVSFDFEDNPIP---IVSTNA 360 (525)
Q Consensus 288 ~~~~~~ll~~~~~Le~L~L~~c~~l~~-~~~~~~~L~~L~l~~c~~--L-~~l~~~~p~L~~l~~~g~~~~---~~~~~~ 360 (525)
.. . ....++|+.|+++++..... ....+++|+.|+++++.- + .......++|+.|.++++.+. .....+
T Consensus 219 ~~--~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l 294 (390)
T 3o6n_A 219 VV--R--GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI 294 (390)
T ss_dssp EE--E--CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCC
T ss_pred ec--c--ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCC
Confidence 52 1 12346777777777643111 112346777777776531 1 111234567777777776553 222346
Q ss_pred CCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796 361 PCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (525)
Q Consensus 361 ~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~ 432 (525)
++|+.++++. +.+.. +...+..+++|+.|+++.|..... .+..+++|+.|.|.+|
T Consensus 295 ~~L~~L~L~~-n~l~~-----~~~~~~~l~~L~~L~L~~N~i~~~-----------~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 295 PTLKVLDLSH-NHLLH-----VERNQPQFDRLENLYLDHNSIVTL-----------KLSTHHTLKNLTLSHN 349 (390)
T ss_dssp TTCCEEECCS-SCCCC-----CGGGHHHHTTCSEEECCSSCCCCC-----------CCCTTCCCSEEECCSS
T ss_pred CCCCEEECCC-Cccee-----cCccccccCcCCEEECCCCcccee-----------CchhhccCCEEEcCCC
Confidence 7777777764 22221 222245667777777776654321 2445667777777766
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.63 E-value=1.1e-15 Score=151.17 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=115.3
Q ss_pred CCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--ecccCCCccEEE
Q 009796 160 AKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLI 236 (525)
Q Consensus 160 ~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--~i~~l~~L~~L~ 236 (525)
.++++.|+|++|.+.. +..+..+++|++|+|++|.+. .++..+..+++|++|+|++|... .+ .+.++++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 4789999999999988 777888999999999999885 35556788999999999999653 33 255789999999
Q ss_pred Eeeec--cccceEE---------EeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEE
Q 009796 237 LRFTY--QELESVE---------IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304 (525)
Q Consensus 237 l~~c~--~~l~~~~---------~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L 304 (525)
+++|. ..++... ..+++|++|++++|. ...+..++.+++|+.|++++|.+++ +...+.++++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence 99986 2222111 148889999998887 5555678888889999998888875 44456788888888
Q ss_pred EecCccch
Q 009796 305 SIISLETL 312 (525)
Q Consensus 305 ~L~~c~~l 312 (525)
++++|...
T Consensus 235 ~Ls~n~~~ 242 (328)
T 4fcg_A 235 DLRGCTAL 242 (328)
T ss_dssp ECTTCTTC
T ss_pred ECcCCcch
Confidence 88886543
No 25
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=6.9e-17 Score=173.04 Aligned_cols=245 Identities=20% Similarity=0.228 Sum_probs=143.5
Q ss_pred hhHHHHHHHHHH--cCCeEEEEEeecCCCCcccCCcccc-CCCCccEEEecCC-cCCC---CCCCCCCCcccEEEeceee
Q 009796 122 PLFDKWVELAME--NGVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGC-KLEQ---PSHCANLQSLKKLSLDEVY 194 (525)
Q Consensus 122 ~~~~~wl~~~~~--~~l~~L~l~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~-~l~~---~~~~~~l~~L~~L~L~~~~ 194 (525)
..+..|+..... +++++|++.. +.. ....+..+. .+++|++|+|++| .+.. +....++++|++|+|++|.
T Consensus 91 ~~~~~~l~~l~~~~~~L~~L~L~~--~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 91 GYVYPWIEAMSSSYTWLEEIRLKR--MVV-TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp CBCHHHHHHHHHHCTTCCEEEEES--CBC-CHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred chhhHHHHHHHHhCCCCCeEEeeC--cEE-cHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 344566665543 3788888775 211 111222232 5778888888877 3332 2233467888888888777
Q ss_pred ech---HHHHHHHhCCcCccEEEEeecC-CCceee----cccCCCccEEEEeeec--cccceEEEeCCCccEEEecccc-
Q 009796 195 VND---QMVQSLVRECRVLEDLSFFYCF-GLKRLR----ISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR- 263 (525)
Q Consensus 195 ~~~---~~l~~ll~~c~~Le~L~L~~c~-~l~~l~----i~~l~~L~~L~l~~c~--~~l~~~~~~~~~L~~L~l~~~~- 263 (525)
+++ ..+..+...|++|++|++++|. .+..-. +.++++|++|++.+|. ..+..+...+++|++|.+.++.
T Consensus 168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247 (594)
T ss_dssp EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC
Confidence 632 2344455577788888887775 121111 1235888888888774 1222222245666666543321
Q ss_pred -------------------------------ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc-
Q 009796 264 -------------------------------VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET- 311 (525)
Q Consensus 264 -------------------------------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~- 311 (525)
...+..+..+++|+.|+++++.+++..+..++.++++|++|++.+|..
T Consensus 248 ~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~ 327 (594)
T 2p1m_B 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIED 327 (594)
T ss_dssp CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCH
Confidence 111222235788999999888888877777788899999999998732
Q ss_pred --hhHhhhcCcccceEcccc--------ccch-----hhhcccCCCcceEEEecCCCC----cccc-cCCCCceEEEE
Q 009796 312 --LERIMISSNRLMHLEVYN--------CSGL-----NRINVDAPNLVSFDFEDNPIP----IVST-NAPCPLNVLFS 369 (525)
Q Consensus 312 --l~~~~~~~~~L~~L~l~~--------c~~L-----~~l~~~~p~L~~l~~~g~~~~----~~~~-~~~~L~~l~l~ 369 (525)
+..+...+++|+.|++.. |..+ ..+...+|+|+.|.+..+.+. ..+. .+++|+.+++.
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 222333478888888833 3333 223334677777765555443 1111 36677777776
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=5.9e-16 Score=160.21 Aligned_cols=288 Identities=12% Similarity=0.060 Sum_probs=183.3
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--C--CCCCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--P--SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~ 209 (525)
.++++|+++. + ......|..+..+++|++|+|++|.+.. + ..+..+++|++|+|++|.+.......++.++++
T Consensus 79 ~~L~~L~Ls~--n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 79 SSLIILKLDY--N-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCCEEECTT--C-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred ccCCEEeCCC--C-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 5789998865 2 2233446778889999999999999986 3 337889999999999999854322344788999
Q ss_pred ccEEEEeecCCCcee--ecccC--CCccEEEEeeec-cccceE---------EEeCCCccEEEecccc--ccceeecc--
Q 009796 210 LEDLSFFYCFGLKRL--RISEA--HKLKSLILRFTY-QELESV---------EIAVPSLQQLELSFSR--VPRLLDVA-- 271 (525)
Q Consensus 210 Le~L~L~~c~~l~~l--~i~~l--~~L~~L~l~~c~-~~l~~~---------~~~~~~L~~L~l~~~~--~~~~~~~~-- 271 (525)
|++|++++|...... .+..+ ++|+.|++++|. ..+... ....++|++|+++++. ...+..+.
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 999999998642211 12222 678888888775 221111 1134678888888886 22222222
Q ss_pred -CCCCccEEEeeCCCCChhhhh---------hhh--cCCCCCcEEEecCccchh---HhhhcCcccceEccccccc--h-
Q 009796 272 -ECPHLRKLVLFLPHFNDQEFH---------PLI--SKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSG--L- 333 (525)
Q Consensus 272 -~l~~L~~L~L~~~~~~~~~~~---------~ll--~~~~~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~--L- 333 (525)
..++|+.|+++++...+..+. ..+ ...++|+.|+++++.... .....+++|+.|+++++.- +
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 236677777766543321110 001 123577777777764321 1122346777777776431 1
Q ss_pred hhhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeec
Q 009796 334 NRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNID 409 (525)
Q Consensus 334 ~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp 409 (525)
.......++|+.|.++++.+. ..+.++++|+.+++++ +.+.. .....+..+++|++|+++.|.... +|
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~---~~ 387 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY-NHIRA----LGDQSFLGLPNLKELALDTNQLKS---VP 387 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS-SCCCE----ECTTTTTTCTTCCEEECCSSCCSC---CC
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC-Ccccc----cChhhccccccccEEECCCCcccc---CC
Confidence 111234678888888887663 3455689999999985 33322 223456789999999999877664 33
Q ss_pred cccccCCCCCCCcccceEEEEEeeeccC
Q 009796 410 EFRSCHPSLPLQVESLSLFMESFSLYMD 437 (525)
Q Consensus 410 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 437 (525)
+. .+..+++|++|.|.+|....+
T Consensus 388 ~~-----~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 388 DG-----IFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TT-----TTTTCTTCCEEECCSSCBCCC
T ss_pred Hh-----HhccCCcccEEEccCCCcccC
Confidence 21 346689999999999866655
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=5.8e-16 Score=170.81 Aligned_cols=279 Identities=10% Similarity=0.040 Sum_probs=187.5
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCc-CCC---CC-------CCCCCCcccEEEeceeeechHHHHH
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCK-LEQ---PS-------HCANLQSLKKLSLDEVYVNDQMVQS 202 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~---~~-------~~~~l~~L~~L~L~~~~~~~~~l~~ 202 (525)
.+++.|++.. ......+|..+..+++|+.|+|++|. +.+ |. .+..+++|++|+|++|.+. .++.
T Consensus 491 ~~L~~L~Ls~---N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~ 565 (876)
T 4ecn_A 491 KDLTDVELYN---CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPA 565 (876)
T ss_dssp TTCCEEEEES---CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCC
T ss_pred CCCCEEECcC---CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCC
Confidence 5899999986 23356789899999999999999997 653 33 3345669999999999986 3555
Q ss_pred --HHhCCcCccEEEEeecCCCcee-ecccCCCccEEEEeeec-cccceEEEeCCC-ccEEEecccc-ccceeeccCCC--
Q 009796 203 --LVRECRVLEDLSFFYCFGLKRL-RISEAHKLKSLILRFTY-QELESVEIAVPS-LQQLELSFSR-VPRLLDVAECP-- 274 (525)
Q Consensus 203 --ll~~c~~Le~L~L~~c~~l~~l-~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~-L~~L~l~~~~-~~~~~~~~~l~-- 274 (525)
.+.++++|++|+|++|... .+ .+..+++|+.|++++|. ..++.....+++ |+.|++++|. ...+..+..++
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 7889999999999998753 33 45567899999999986 322222235677 9999999988 44455555554
Q ss_pred CccEEEeeCCCCChhhhhhh---hc--CCCCCcEEEecCccch--hH-hhhcCcccceEccccccchhhhcc--------
Q 009796 275 HLRKLVLFLPHFNDQEFHPL---IS--KFPLLEDLSIISLETL--ER-IMISSNRLMHLEVYNCSGLNRINV-------- 338 (525)
Q Consensus 275 ~L~~L~L~~~~~~~~~~~~l---l~--~~~~Le~L~L~~c~~l--~~-~~~~~~~L~~L~l~~c~~L~~l~~-------- 338 (525)
+|+.|++++|.+++. ++.+ +. .+++|+.|+|+++... .. +...+++|+.|+++++. +..+..
T Consensus 645 ~L~~L~Ls~N~l~g~-ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTT-SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCc-cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccc
Confidence 488999988888763 2211 11 3457888888876532 11 12245778888887742 222221
Q ss_pred ---cCCCcceEEEecCCCC---cccc--cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEe------eee
Q 009796 339 ---DAPNLVSFDFEDNPIP---IVST--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY------KQV 404 (525)
Q Consensus 339 ---~~p~L~~l~~~g~~~~---~~~~--~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~------~~~ 404 (525)
++++|+.|.++++.+. ..+. .+++|+.|+++. +.+.. ++.-+.++++|+.|+|+.|. ...
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY-NCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp CCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCS-SCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred cccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCC-CCCCc-----cchhhhcCCCCCEEECCCCCCcccccccc
Confidence 1127888888877653 3343 678888888874 22222 23335578888888887633 222
Q ss_pred eeeeccccccCCCCCCCcccceEEEEEeee
Q 009796 405 LFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 405 ~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
. +| ..+..+++|++|.|.+|.+
T Consensus 797 ~--ip------~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 797 Q--WP------TGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp C--CC------TTGGGCSSCCEEECCSSCC
T ss_pred c--Ch------HHHhcCCCCCEEECCCCCC
Confidence 2 33 1455678888888887754
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.60 E-value=4.2e-16 Score=168.10 Aligned_cols=280 Identities=10% Similarity=0.055 Sum_probs=192.0
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCc-CCC---CCCCCCC------CcccEEEeceeeechHHHHH-
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCK-LEQ---PSHCANL------QSLKKLSLDEVYVNDQMVQS- 202 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~---~~~~~~l------~~L~~L~L~~~~~~~~~l~~- 202 (525)
.++++|++.. ......+|..+.++++|++|+|++|. +.+ |..++.+ ++|++|+|++|.++ .++.
T Consensus 249 ~~L~~L~L~~---n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~ 323 (636)
T 4eco_A 249 KDLTDVEVYN---CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVE 323 (636)
T ss_dssp TTCCEEEEEC---CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCH
T ss_pred CCCCEEEecC---CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCch
Confidence 5899999986 23356789999999999999999998 763 4444444 99999999999986 3555
Q ss_pred -HHhCCcCccEEEEeecCCCcee-ecccCCCccEEEEeeec-cccceEEEeCCC-ccEEEecccc-ccceeeccCCC--C
Q 009796 203 -LVRECRVLEDLSFFYCFGLKRL-RISEAHKLKSLILRFTY-QELESVEIAVPS-LQQLELSFSR-VPRLLDVAECP--H 275 (525)
Q Consensus 203 -ll~~c~~Le~L~L~~c~~l~~l-~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~-L~~L~l~~~~-~~~~~~~~~l~--~ 275 (525)
.+.++++|++|++++|.....+ .+..+++|+.|++++|. ..++.....+++ |++|+++++. ...+..++.++ +
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 7889999999999998754233 34467899999999886 222222235677 9999999988 54455555544 8
Q ss_pred ccEEEeeCCCCChhhhhhhhc-------CCCCCcEEEecCccch--h-HhhhcCcccceEccccccchhhhccc------
Q 009796 276 LRKLVLFLPHFNDQEFHPLIS-------KFPLLEDLSIISLETL--E-RIMISSNRLMHLEVYNCSGLNRINVD------ 339 (525)
Q Consensus 276 L~~L~L~~~~~~~~~~~~ll~-------~~~~Le~L~L~~c~~l--~-~~~~~~~~L~~L~l~~c~~L~~l~~~------ 339 (525)
|+.|+++++.+++. .+..+. .+++|+.|+++++..- . .+...+++|+.|+++++. +..+...
T Consensus 404 L~~L~Ls~N~l~~~-~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~ 481 (636)
T 4eco_A 404 MSAIDFSYNEIGSV-DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDEN 481 (636)
T ss_dssp EEEEECCSSCTTTT-TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETT
T ss_pred cCEEECcCCcCCCc-chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccc
Confidence 99999998888764 222233 5678889999886532 1 122235788888888753 2222211
Q ss_pred -----CCCcceEEEecCCCC---cccc--cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEe------ee
Q 009796 340 -----APNLVSFDFEDNPIP---IVST--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY------KQ 403 (525)
Q Consensus 340 -----~p~L~~l~~~g~~~~---~~~~--~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~------~~ 403 (525)
+++|+.|.++++.+. ..+. .+++|+.++++. +.+.. ++..+.++++|+.|++++|. ..
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCS-SCCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCC-CCCCC-----cChhhhcCCCCCEEECCCCcccccCccc
Confidence 127888888887653 3343 678888888874 33222 23345678888888886432 22
Q ss_pred eeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796 404 VLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 404 ~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
.. +| . .+..+++|+.|+|..|.+
T Consensus 556 ~~--~p-----~-~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 556 RE--WP-----E-GITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CC--CC-----T-TGGGCSSCCEEECCSSCC
T ss_pred cc--Ch-----H-HHhcCCCCCEEECCCCcC
Confidence 22 44 1 455678888888888744
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=4.7e-15 Score=157.24 Aligned_cols=307 Identities=13% Similarity=0.070 Sum_probs=180.3
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
..+++|+++. + ......|..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.+... ....++++++|+
T Consensus 26 ~~L~~L~Ls~--n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSF--N-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCS--S-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCC
T ss_pred CCccEEECcC--C-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCc
Confidence 4688888765 2 1222335567778889999999888877 45678888899999988887432 344577888999
Q ss_pred EEEEeecCCCc-e--eecccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc--ccceeeccCCCCccEEEee
Q 009796 212 DLSFFYCFGLK-R--LRISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLF 282 (525)
Q Consensus 212 ~L~L~~c~~l~-~--l~i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~ 282 (525)
+|++++|.... . -.+.++++|+.|++++|. .+..+. ..+++|++|+++++. ...+..++.+++|+.|+++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE-TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCc-cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 99998886432 1 234567888888888885 233321 247788888888887 3345567777788888887
Q ss_pred CCCCChhhhhhhhcCCCCCcEEEecCccchhH------hhhcCcccceEcccccc-------chhhhc------------
Q 009796 283 LPHFNDQEFHPLISKFPLLEDLSIISLETLER------IMISSNRLMHLEVYNCS-------GLNRIN------------ 337 (525)
Q Consensus 283 ~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~------~~~~~~~L~~L~l~~c~-------~L~~l~------------ 337 (525)
.+.+... ...++..+++|+.|+++++..... +...++.|+.|.+.++. .+....
T Consensus 181 ~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCccccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 7766542 233345677777777777542211 11113455555554421 001111
Q ss_pred ------------------ccCCCcceEEEecCCCCcc---------cccCCCCceEEEEeeecCChhccccHHHHHHhcc
Q 009796 338 ------------------VDAPNLVSFDFEDNPIPIV---------STNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFN 390 (525)
Q Consensus 338 ------------------~~~p~L~~l~~~g~~~~~~---------~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~ 390 (525)
...++|+.+.+.+..++.. ....++|+.++++. +.+ ......+++.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~-n~l----~~ip~~~~~~l~ 334 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN-SKV----FLVPCSFSQHLK 334 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES-SCC----CCCCHHHHHHCT
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc-Ccc----ccCCHHHHhcCc
Confidence 1234455555544443311 01134566666653 211 122334556788
Q ss_pred ccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeec
Q 009796 391 QIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLS 462 (525)
Q Consensus 391 ~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~ 462 (525)
+|+.|+++.|.....+ |+. .. .+..+++|++|.|..|.+.. .......+-..+.+++|.+.
T Consensus 335 ~L~~L~Ls~N~l~~~~--~~~--~~-~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 335 SLEFLDLSENLMVEEY--LKN--SA-CKGAWPSLQTLVLSQNHLRS------MQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp TCCEEECCSSCCCHHH--HHH--HT-CTTSSTTCCEEECTTSCCCC------HHHHHHHGGGCTTCCEEECT
T ss_pred cccEEEccCCcccccc--ccc--hh-hhhccccCcEEEccCCcccc------cccchhhhhcCCCCCEEECC
Confidence 8888888877765542 110 01 34567888888888773211 11111223344568888873
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=4.8e-16 Score=157.60 Aligned_cols=287 Identities=19% Similarity=0.136 Sum_probs=185.5
Q ss_pred cCCeEEEEEeecCCCCcccCCccc-cCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTI-FSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
.+++.+++.. .....+|..+ ..+++|++|+|++|.+.. +..+..+++|++|+|++|.++.. .+..+.++++|
T Consensus 45 ~~l~~l~l~~----~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKN----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEES----CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCceEEEecC----CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCC
Confidence 5788888765 2344566654 457889999999888776 44678888999999988887421 23446778889
Q ss_pred cEEEEeecCCCceee---cccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCC
Q 009796 211 EDLSFFYCFGLKRLR---ISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLP 284 (525)
Q Consensus 211 e~L~L~~c~~l~~l~---i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~ 284 (525)
++|++++|.. ..+. +..+++|+.|++++|. ..+..- ...+++|++|+++++. ... .++.+++|+.|+++++
T Consensus 120 ~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 120 TVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSS
T ss_pred CEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccc
Confidence 9999988854 2333 3457888888888885 222111 1256888888888887 222 4677888888888888
Q ss_pred CCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC----cccc
Q 009796 285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP----IVST 358 (525)
Q Consensus 285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~----~~~~ 358 (525)
.++. +...++|+.|+++++..-.......++|+.|+++++. ....+ ...++|+.|.++++.+. ..+.
T Consensus 197 ~l~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 197 LLST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp CCSE------EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGG-GGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cccc------cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHH-cCCCCccEEECCCCcCCCcChhHcc
Confidence 7765 2345678888888765322112224678888887753 22222 45678888888887653 3445
Q ss_pred cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCC
Q 009796 359 NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDV 438 (525)
Q Consensus 359 ~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 438 (525)
.+++|+.++++. +.+.. +......+++|++|+++.|.... +|+ .+..+++|++|.|.+|....-
T Consensus 270 ~l~~L~~L~L~~-n~l~~-----~~~~~~~l~~L~~L~L~~n~l~~---~~~------~~~~l~~L~~L~L~~N~i~~~- 333 (390)
T 3o6n_A 270 KMQRLERLYISN-NRLVA-----LNLYGQPIPTLKVLDLSHNHLLH---VER------NQPQFDRLENLYLDHNSIVTL- 333 (390)
T ss_dssp TCSSCCEEECCS-SCCCE-----EECSSSCCTTCCEEECCSSCCCC---CGG------GHHHHTTCSEEECCSSCCCCC-
T ss_pred ccccCCEEECCC-CcCcc-----cCcccCCCCCCCEEECCCCccee---cCc------cccccCcCCEEECCCCcccee-
Confidence 678888888874 22222 11122567888888888776542 331 344567888888887733211
Q ss_pred CchhHHHHHHhHhhhccccceee
Q 009796 439 VPSEYEILLDDLFWIFYPKNLCL 461 (525)
Q Consensus 439 ~~~~~~~~~~~Ll~~~~l~~l~l 461 (525)
.+-..+.++++.+
T Consensus 334 ----------~~~~~~~L~~L~l 346 (390)
T 3o6n_A 334 ----------KLSTHHTLKNLTL 346 (390)
T ss_dssp ----------CCCTTCCCSEEEC
T ss_pred ----------CchhhccCCEEEc
Confidence 1223346777777
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=6.1e-16 Score=159.94 Aligned_cols=270 Identities=15% Similarity=0.097 Sum_probs=145.3
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.++++|+++. +. ...+| +..+++|++|++++|.+...+ ++++++|++|++++|.++. ++ ++.+++|++|
T Consensus 64 ~~L~~L~Ls~--n~--l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L 132 (457)
T 3bz5_A 64 TGLTKLICTS--NN--ITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYL 132 (457)
T ss_dssp TTCSEEECCS--SC--CSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEE
T ss_pred CCCCEEEccC--Cc--CCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEE
Confidence 4677777665 21 12233 556677777777777776632 5667777777777776643 11 5667777777
Q ss_pred EEeecCCCceeecccCCCccEEEEeeeccccceEEE-eCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796 214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEI-AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (525)
Q Consensus 214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 291 (525)
++++|.. ..+.+..+++|+.|++++|. .+..+.+ .+++|++|+++++. ...+ ++.+++|+.|+++++.+++.
T Consensus 133 ~l~~N~l-~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-- 206 (457)
T 3bz5_A 133 NCARNTL-TEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-- 206 (457)
T ss_dssp ECTTSCC-SCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC--
T ss_pred ECCCCcc-ceeccccCCcCCEEECCCCC-cccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee--
Confidence 7776643 33455566777777777664 2222222 45667777776666 2222 56666666666666666552
Q ss_pred hhhhcCCCCCcEEEecCccchhHhh-hcCcccceEccccc----------cchhhhcccCCCcceEEEecCCCC--cccc
Q 009796 292 HPLISKFPLLEDLSIISLETLERIM-ISSNRLMHLEVYNC----------SGLNRINVDAPNLVSFDFEDNPIP--IVST 358 (525)
Q Consensus 292 ~~ll~~~~~Le~L~L~~c~~l~~~~-~~~~~L~~L~l~~c----------~~L~~l~~~~p~L~~l~~~g~~~~--~~~~ 358 (525)
-+..+++|+.|+++++.. +.+. ..+++|+.|+++++ ++++.+....++|+.++++++... +...
T Consensus 207 --~l~~l~~L~~L~Ls~N~l-~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~ 283 (457)
T 3bz5_A 207 --DLNQNIQLTFLDCSSNKL-TEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE 283 (457)
T ss_dssp --CCTTCTTCSEEECCSSCC-SCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred --ccccCCCCCEEECcCCcc-cccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccc
Confidence 145566666666666532 1111 12345555555542 223333333344444444444321 2233
Q ss_pred cCCCCceEEEEeeecCChhcc--ccHHH-HHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796 359 NAPCPLNVLFSNFGDIDTHWY--LNLME-FIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 359 ~~~~L~~l~l~~~~~~~~~~~--~~l~~-~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
.+++|+.++++.......... ..+.. -+..+++|+.|.++.|..... .+..+++|+.|++..|.+
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-----------~l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-----------DVSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-----------CCTTCTTCSEEECCSSCC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-----------ccccCCcCcEEECCCCCC
Confidence 456677777653111100000 00000 034556777777776654431 245567778888777643
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=168.54 Aligned_cols=135 Identities=17% Similarity=0.106 Sum_probs=62.5
Q ss_pred CccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHH-HHHhCCcCccEEEEeecCCCce---eecc
Q 009796 154 PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQ-SLVRECRVLEDLSFFYCFGLKR---LRIS 227 (525)
Q Consensus 154 p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~c~~Le~L~L~~c~~l~~---l~i~ 227 (525)
|..+.++++|++|+|++|.+.. +..+.++++|++|+|++|.+.+..+. ..+.++++|++|+|++|..... -.+.
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 3344455555555555555544 44455555555555555554321111 1244555555555555543221 1133
Q ss_pred cCCCccEEEEeeec-cccceEEE-eC--CCccEEEecccc--ccceeeccCCCC------ccEEEeeCCCCCh
Q 009796 228 EAHKLKSLILRFTY-QELESVEI-AV--PSLQQLELSFSR--VPRLLDVAECPH------LRKLVLFLPHFND 288 (525)
Q Consensus 228 ~l~~L~~L~l~~c~-~~l~~~~~-~~--~~L~~L~l~~~~--~~~~~~~~~l~~------L~~L~L~~~~~~~ 288 (525)
++++|+.|++++|. .....-.+ .+ ++|+.|+++++. ...+..++.+++ |+.|+++++.+++
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence 45555555555553 11100000 11 455555555555 222333344443 6666666665443
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.59 E-value=4.3e-16 Score=153.02 Aligned_cols=241 Identities=15% Similarity=0.024 Sum_probs=127.6
Q ss_pred cCCeEEEEEeecCCCC-cccCCccccCCCCccEEEecC-CcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796 134 NGVKELDFEVITDKNS-VNALPQTIFSAKLLTSLKLFG-CKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~-~~~lp~~l~~~~~L~~L~L~~-~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~ 209 (525)
.+|++|++.. .... ...+|..+..+++|++|+|++ +.+.+ |..+.++++|++|+|++|.++. .++..+..+++
T Consensus 50 ~~l~~L~L~~--~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSG--LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEEC--CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTT
T ss_pred ceEEEEECCC--CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCC
Confidence 3567777665 1111 115677777777788888874 66554 5566777777777777777632 13334566777
Q ss_pred ccEEEEeecCCCcee--ecccCCCccEEEEeeec-c-ccceEEEeCC-CccEEEecccc--ccceeeccCCCCccEEEee
Q 009796 210 LEDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-Q-ELESVEIAVP-SLQQLELSFSR--VPRLLDVAECPHLRKLVLF 282 (525)
Q Consensus 210 Le~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~-~-~l~~~~~~~~-~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~ 282 (525)
|++|++++|.....+ .+..+++|+.|++++|. . .+......++ +|++|+++++. ...+..++.++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 777777776432221 23345566666666553 0 1111111222 45555555544 22333344443 5555555
Q ss_pred CCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCC
Q 009796 283 LPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPC 362 (525)
Q Consensus 283 ~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~ 362 (525)
++.+++. ....+.++++|+.|+++++.... .+..+..+++
T Consensus 206 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~---------------------------------------~~~~~~~l~~ 245 (313)
T 1ogq_A 206 RNMLEGD-ASVLFGSDKNTQKIHLAKNSLAF---------------------------------------DLGKVGLSKN 245 (313)
T ss_dssp SSEEEEC-CGGGCCTTSCCSEEECCSSEECC---------------------------------------BGGGCCCCTT
T ss_pred CCcccCc-CCHHHhcCCCCCEEECCCCceee---------------------------------------ecCcccccCC
Confidence 5444432 23334444444444444422100 0011223455
Q ss_pred CceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796 363 PLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (525)
Q Consensus 363 L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~ 432 (525)
|++++++. +.+. +..+..+..+++|+.|+++.|...+. +| ....+++|+.|.+.+|
T Consensus 246 L~~L~Ls~-N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~--ip-------~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 246 LNGLDLRN-NRIY----GTLPQGLTQLKFLHSLNVSFNNLCGE--IP-------QGGNLQRFDVSAYANN 301 (313)
T ss_dssp CCEEECCS-SCCE----ECCCGGGGGCTTCCEEECCSSEEEEE--CC-------CSTTGGGSCGGGTCSS
T ss_pred CCEEECcC-Cccc----CcCChHHhcCcCCCEEECcCCccccc--CC-------CCccccccChHHhcCC
Confidence 66666653 2111 12334456788888888888777765 33 3456778888877766
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=1.9e-15 Score=156.22 Aligned_cols=295 Identities=17% Similarity=0.136 Sum_probs=206.6
Q ss_pred HcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 133 ~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
..++++|+++. +. ...+| .+..+++|++|+|++|.+...+ ++.+++|++|++++|.++.- + ++++++|++
T Consensus 41 l~~L~~L~Ls~--n~--l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHN--SS--ITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCS--SC--CCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCE
T ss_pred cCCCCEEEccC--CC--cccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee--e--cCCCCcCCE
Confidence 36899999876 22 22345 6788999999999999988732 78899999999999998542 2 788999999
Q ss_pred EEEeecCCCceeecccCCCccEEEEeeeccccceEEE-eCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhh
Q 009796 213 LSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEI-AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (525)
Q Consensus 213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 291 (525)
|++++|.. ..+.+..+++|+.|++++|. +..+.+ .+++|++|+++++.......++.+++|+.|+++++.+++-
T Consensus 111 L~L~~N~l-~~l~~~~l~~L~~L~l~~N~--l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-- 185 (457)
T 3bz5_A 111 LNCDTNKL-TKLDVSQNPLLTYLNCARNT--LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-- 185 (457)
T ss_dssp EECCSSCC-SCCCCTTCTTCCEEECTTSC--CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--
T ss_pred EECCCCcC-CeecCCCCCcCCEEECCCCc--cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--
Confidence 99999853 44667888999999999996 333334 6899999999999622223688999999999999999883
Q ss_pred hhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhc-ccCCCcceEEEecCCCC-cccccCCCCceEEEE
Q 009796 292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRIN-VDAPNLVSFDFEDNPIP-IVSTNAPCPLNVLFS 369 (525)
Q Consensus 292 ~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~-~~~p~L~~l~~~g~~~~-~~~~~~~~L~~l~l~ 369 (525)
+ +..+++|+.|+++++..-..-...+++|+.|+++++. +..+. ...++|+.|.++++.+. .....+++|+.+++.
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI 262 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred c--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence 3 6789999999999875322112235789999998853 32222 35689999999988764 334456667666553
Q ss_pred eeecCCh------hccccHHHHHHhccccceEEEEEEeeeeeeeeccc---cccCCCCCCCcccceEEEEEeeeccCCCc
Q 009796 370 NFGDIDT------HWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEF---RSCHPSLPLQVESLSLFMESFSLYMDVVP 440 (525)
Q Consensus 370 ~~~~~~~------~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 440 (525)
. ..... ...+.++ ...+++|+.|+++.|..... +|.. +... .+...++|++|.+..|.+.+
T Consensus 263 ~-n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~--l~~~~~~L~~L-~l~~~~~L~~L~L~~N~l~~---- 332 (457)
T 3bz5_A 263 Q-TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL--LDCQAAGITEL-DLSQNPKLVYLYLNNTELTE---- 332 (457)
T ss_dssp T-CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE--EECTTCCCSCC-CCTTCTTCCEEECTTCCCSC----
T ss_pred C-CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccce--eccCCCcceEe-chhhcccCCEEECCCCcccc----
Confidence 2 11110 0111111 35679999999998765554 3321 1112 35567889999998884322
Q ss_pred hhHHHHHHhHhhhccccceeec
Q 009796 441 SEYEILLDDLFWIFYPKNLCLS 462 (525)
Q Consensus 441 ~~~~~~~~~Ll~~~~l~~l~l~ 462 (525)
+ .+-.++.++++.+.
T Consensus 333 -----l--~l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 333 -----L--DVSHNTKLKSLSCV 347 (457)
T ss_dssp -----C--CCTTCTTCSEEECC
T ss_pred -----c--ccccCCcCcEEECC
Confidence 1 13345578888873
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.59 E-value=2e-15 Score=164.34 Aligned_cols=286 Identities=15% Similarity=0.059 Sum_probs=143.5
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCC--CccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAK--LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~--~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~ 209 (525)
..+++|++.. + ......|..+..++ +|++|+|++|.+.. +..+..+++|++|+|++|.+... ....+.++++
T Consensus 222 ~~L~~L~L~~--n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 297 (680)
T 1ziw_A 222 TSIRNLSLSN--S-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFN 297 (680)
T ss_dssp SCCCEEECTT--S-CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTT
T ss_pred ccccEEEccC--C-cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCC
Confidence 4677777654 1 11222233444443 37777777766655 34456667777777766655221 1223444555
Q ss_pred ccEEEEee---------------------------------cCCCc--eeecccCCCccEEEEeeeccccceEE------
Q 009796 210 LEDLSFFY---------------------------------CFGLK--RLRISEAHKLKSLILRFTYQELESVE------ 248 (525)
Q Consensus 210 Le~L~L~~---------------------------------c~~l~--~l~i~~l~~L~~L~l~~c~~~l~~~~------ 248 (525)
|++|++.+ |.... ...+.++++|+.|++++|......+.
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence 55555544 32111 01122344555555544421111111
Q ss_pred EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchh---HhhhcCcccc
Q 009796 249 IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLE---RIMISSNRLM 323 (525)
Q Consensus 249 ~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~---~~~~~~~~L~ 323 (525)
...++|+.|+++++. ...+..+..+++|+.|+++++.+++......+.++++|+.|+++++.... .....+++|+
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence 012456666666665 22234566777888888887777654333556677788888887765311 1112246677
Q ss_pred eEcccccc--chh---hhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhcccc----HHHHHHhcc
Q 009796 324 HLEVYNCS--GLN---RINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLN----LMEFIGAFN 390 (525)
Q Consensus 324 ~L~l~~c~--~L~---~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~----l~~~l~~l~ 390 (525)
.|.+.++. .+. .....+++|+.|.++++.+. ..+..+++|+.++++. +.+....... ....+..++
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCT
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhcCCC
Confidence 77666542 111 11124566777777666543 2234566777777764 2222211100 001245566
Q ss_pred ccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796 391 QIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (525)
Q Consensus 391 ~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~ 432 (525)
+|+.|+++.|.... +|.. .+..+++|+.|+|..|
T Consensus 537 ~L~~L~L~~N~l~~---i~~~-----~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 537 HLHILNLESNGFDE---IPVE-----VFKDLFELKIIDLGLN 570 (680)
T ss_dssp TCCEEECCSSCCCC---CCTT-----TTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCC---CCHH-----HcccccCcceeECCCC
Confidence 66666666555441 3311 2344566666666555
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.58 E-value=8.8e-15 Score=163.05 Aligned_cols=264 Identities=16% Similarity=0.128 Sum_probs=161.0
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCC--CCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSH--CANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~ 209 (525)
.+++.|+++. .......|..+.++++|++|+|++|.+.. +.. +.++++|++|+|++|.+........++++++
T Consensus 73 ~~L~~L~Ls~---N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 73 PNLRILDLGS---SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp TTCCEEECTT---CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred CCCCEEECCC---CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 3678877754 12223346677788888888888887765 332 6788888888888887743333345678888
Q ss_pred ccEEEEeecCCCc---------------eee-------------cccCCC------ccEEEEeeec--c-----------
Q 009796 210 LEDLSFFYCFGLK---------------RLR-------------ISEAHK------LKSLILRFTY--Q----------- 242 (525)
Q Consensus 210 Le~L~L~~c~~l~---------------~l~-------------i~~l~~------L~~L~l~~c~--~----------- 242 (525)
|++|++++|.... .+. +..+++ |+.|++++|. .
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 8888888774311 010 111222 6777777663 0
Q ss_pred --ccceEEE-------------------------eCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhh
Q 009796 243 --ELESVEI-------------------------AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHP 293 (525)
Q Consensus 243 --~l~~~~~-------------------------~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 293 (525)
.+..+.+ ..++|+.|+++++. ...+..++.+++|+.|+|+++.+++. ...
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~ 308 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-ADE 308 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-CTT
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-ChH
Confidence 0001110 12678888888887 33345678899999999999988764 345
Q ss_pred hhcCCCCCcEEEecCccchh---HhhhcCcccceEccccccchhhh----cccCCCcceEEEecCCCCcccccCCCCceE
Q 009796 294 LISKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPIPIVSTNAPCPLNV 366 (525)
Q Consensus 294 ll~~~~~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~L~~l----~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l 366 (525)
.+.++++|++|+|+++.... ......++|+.|+++++. +..+ ....++|+.|.++++.+. .+..+++|+.+
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~L~~L 386 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDI 386 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSC-CCSSCCSCSEE
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCC-cccCCCCcchh
Confidence 57788999999998875311 112235678888888752 3222 134577888888777543 11225566666
Q ss_pred EEEeeecCCh-----------------hccccHHHHHHhccccceEEEEEEeeee
Q 009796 367 LFSNFGDIDT-----------------HWYLNLMEFIGAFNQIGELHLSLNYKQV 404 (525)
Q Consensus 367 ~l~~~~~~~~-----------------~~~~~l~~~l~~l~~L~~L~L~~~~~~~ 404 (525)
+++. +.+.. ........++.++++|+.|+++.|....
T Consensus 387 ~l~~-N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 387 FLSG-NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp EEES-CCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred ccCC-CCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence 6553 11110 0000123445678888888888776653
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=152.04 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=66.6
Q ss_pred cCCCCCcEEEecCccchhHh---hhcCcccceEcccccc--chhh---hcccCCCcceEEEecCCCCc-----ccccCCC
Q 009796 296 SKFPLLEDLSIISLETLERI---MISSNRLMHLEVYNCS--GLNR---INVDAPNLVSFDFEDNPIPI-----VSTNAPC 362 (525)
Q Consensus 296 ~~~~~Le~L~L~~c~~l~~~---~~~~~~L~~L~l~~c~--~L~~---l~~~~p~L~~l~~~g~~~~~-----~~~~~~~ 362 (525)
..+++|++|+++++.....+ ...+++|+.|+++++. .+.. .....++|+.|+++++.+.. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 46677777777776432211 1234667777777643 1111 12356777777777765431 1334667
Q ss_pred CceEEEEeeecCChhccccHHHHHHhc-cccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeec
Q 009796 363 PLNVLFSNFGDIDTHWYLNLMEFIGAF-NQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLY 435 (525)
Q Consensus 363 L~~l~l~~~~~~~~~~~~~l~~~l~~l-~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~ 435 (525)
|+.++++. +.+... .+..+ ++|+.|+++.|... . +|+. +..+++|++|.|.+|.+.
T Consensus 401 L~~L~Ls~-N~l~~~-------~~~~l~~~L~~L~Ls~N~l~--~-ip~~------~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 401 LLSLNMSS-NILTDT-------IFRCLPPRIKVLDLHSNKIK--S-IPKQ------VVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCEEECCS-SCCCGG-------GGGSCCTTCCEEECCSSCCC--C-CCGG------GGGCTTCCEEECCSSCCC
T ss_pred CCEEECcC-CCCCcc-------hhhhhcccCCEEECCCCccc--c-cchh------hhcCCCCCEEECCCCcCC
Confidence 77777764 222211 11222 57777777766554 2 4422 334677777777766443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=4.6e-15 Score=158.97 Aligned_cols=271 Identities=14% Similarity=0.083 Sum_probs=176.1
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
.+++.|++.. + ......|..+..+++|++|+|++|.+.. +..++++++|++|+|++|.++. ....++.++++|+
T Consensus 75 ~~L~~L~L~~--n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLND--L-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLT 150 (597)
T ss_dssp CCCSEEECTT--S-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred CCCcEEECCC--C-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCC
Confidence 5788888764 1 1122233466778889999999888877 4456788899999998888742 1223457788899
Q ss_pred EEEEeecCCCcee--ecccCCCccEEEEeeeccccceEEE-eCCCccEEEeccccccceeeccCCCCccEEEeeCCCCCh
Q 009796 212 DLSFFYCFGLKRL--RISEAHKLKSLILRFTYQELESVEI-AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFND 288 (525)
Q Consensus 212 ~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 288 (525)
+|+|++|...... .+.++++|+.|++++|. +..+.. .+++|+.|+++++.. ..+...++|+.|+++++.++.
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L~~L~l~~n~l---~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLL---STLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCCGGGCTTCSEEECCSSCC---SEEECCTTCSEEECCSSCCCE
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcChhhhhhhhhhhcccCcc---ccccCCchhheeeccCCcccc
Confidence 9999888543222 24567888888888885 333322 467888888877751 123445677777777777665
Q ss_pred hhhhhhhcCCCCCcEEEecCccchhH-hhhcCcccceEccccccc--h-hhhcccCCCcceEEEecCCCC---cccccCC
Q 009796 289 QEFHPLISKFPLLEDLSIISLETLER-IMISSNRLMHLEVYNCSG--L-NRINVDAPNLVSFDFEDNPIP---IVSTNAP 361 (525)
Q Consensus 289 ~~~~~ll~~~~~Le~L~L~~c~~l~~-~~~~~~~L~~L~l~~c~~--L-~~l~~~~p~L~~l~~~g~~~~---~~~~~~~ 361 (525)
. .. ...++|+.|+|+++..... ....+++|+.|+++++.- + .......++|+.|.++++.+. .....++
T Consensus 226 ~--~~--~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 301 (597)
T 3oja_B 226 V--RG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP 301 (597)
T ss_dssp E--EC--SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCT
T ss_pred c--cc--ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCC
Confidence 2 11 1235778888877643211 122356778888777531 1 112235678888888887664 2334588
Q ss_pred CCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796 362 CPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 362 ~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
+|+.|+++. +.+. .++..+..+++|+.|+|+.|.+... .+..+++|++|.|.+|.+
T Consensus 302 ~L~~L~Ls~-N~l~-----~i~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 302 TLKVLDLSH-NHLL-----HVERNQPQFDRLENLYLDHNSIVTL-----------KLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp TCCEEECCS-SCCC-----CCGGGHHHHTTCSEEECCSSCCCCC-----------CCCTTCCCSEEECCSSCE
T ss_pred CCcEEECCC-CCCC-----ccCcccccCCCCCEEECCCCCCCCc-----------ChhhcCCCCEEEeeCCCC
Confidence 999999985 3222 1333457889999999998775432 255678999999998843
No 39
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=2e-16 Score=164.00 Aligned_cols=316 Identities=16% Similarity=0.089 Sum_probs=207.6
Q ss_pred CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceeeechHHHHHHHhCCc
Q 009796 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECR 208 (525)
Q Consensus 135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~ 208 (525)
.+++|+++. .......+...+..+++|++|+|++|.+.. +..+..+++|++|+|++|.+++..+..+...++
T Consensus 4 ~l~~L~Ls~--~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 4 DIQSLDIQC--EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEES--CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred cceehhhhh--cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 567788865 222222333335578999999999999874 344567899999999999997777777777777
Q ss_pred ----CccEEEEeecCCCc------eeecccCCCccEEEEeeec---cccceEEE----eCCCccEEEecccc-cc-----
Q 009796 209 ----VLEDLSFFYCFGLK------RLRISEAHKLKSLILRFTY---QELESVEI----AVPSLQQLELSFSR-VP----- 265 (525)
Q Consensus 209 ----~Le~L~L~~c~~l~------~l~i~~l~~L~~L~l~~c~---~~l~~~~~----~~~~L~~L~l~~~~-~~----- 265 (525)
+|++|++++|.... .-.+..+++|++|++++|. .....+.. ..++|++|++++|. ..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999996432 1224568999999999986 11111111 24579999999997 21
Q ss_pred ceeeccCCCCccEEEeeCCCCChhhhhhhhc----CCCCCcEEEecCccch-------hHhhhcCcccceEccccccchh
Q 009796 266 RLLDVAECPHLRKLVLFLPHFNDQEFHPLIS----KFPLLEDLSIISLETL-------ERIMISSNRLMHLEVYNCSGLN 334 (525)
Q Consensus 266 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~----~~~~Le~L~L~~c~~l-------~~~~~~~~~L~~L~l~~c~~L~ 334 (525)
....+..+++|+.|+++++.+++.....+.. ..++|++|++++|..- ......+++|++|+++++. +.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CC
Confidence 2345677899999999999988754444332 4679999999998532 1222246899999999874 21
Q ss_pred ---------hhcccCCCcceEEEecCCCCc--------ccccCCCCceEEEEeeecCChhccccHHHHHH-hccccceEE
Q 009796 335 ---------RINVDAPNLVSFDFEDNPIPI--------VSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIG-AFNQIGELH 396 (525)
Q Consensus 335 ---------~l~~~~p~L~~l~~~g~~~~~--------~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~-~l~~L~~L~ 396 (525)
.+....++|+.|.++++.+.. .+..+++|+.++++. +.+.......+...+. ..++|++|+
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHHHHHHhccCCccceeeE
Confidence 122247899999999987642 122478999999975 3333222222222222 336999999
Q ss_pred EEEEeeeeee--eeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhh-hccccceeecCC
Q 009796 397 LSLNYKQVLF--NIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFW-IFYPKNLCLSPE 464 (525)
Q Consensus 397 L~~~~~~~~~--~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~-~~~l~~l~l~~~ 464 (525)
++.|...... .++ . .+..+++|++|+|..|.. .......+...+-. .+.+++|.+...
T Consensus 320 L~~n~l~~~~~~~l~-----~-~l~~~~~L~~L~Ls~n~i----~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 320 VKSCSFTAACCSHFS-----S-VLAQNRFLLELQISNNRL----EDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp CTTSCCBGGGHHHHH-----H-HHHHCSSCCEEECCSSBC----HHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cCCCCCchHHHHHHH-----H-HHhhCCCccEEEccCCcc----ccccHHHHHHHHcCCCCceEEEECCCC
Confidence 9987755431 011 1 234568999999998832 11122333333332 457899998443
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=8.1e-15 Score=146.45 Aligned_cols=257 Identities=15% Similarity=0.122 Sum_probs=140.7
Q ss_pred ccCCccccCCCCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--eec
Q 009796 151 NALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LRI 226 (525)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~i 226 (525)
..+|..+. ++|++|++++|.+.. + ..+.++++|++|+|++|.++.- ....+.++++|++|++++|....- -.+
T Consensus 44 ~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 44 NSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp SSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred cccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence 34554443 366777777766665 2 3456677777777776665321 122345666777777766643211 113
Q ss_pred ccCCCccEEEEeeec-cccce--EEEeCCCccEEEecccc---ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCC
Q 009796 227 SEAHKLKSLILRFTY-QELES--VEIAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPL 300 (525)
Q Consensus 227 ~~l~~L~~L~l~~c~-~~l~~--~~~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~ 300 (525)
.++++|+.|++++|. ..+.. ....+++|++|+++++. ...+..++.+++|+.|+++++.+++. ....+.++++
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~ 199 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQN 199 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHhcccc
Confidence 445666666666664 22222 11245667777776663 11223566677777777777766653 2344566677
Q ss_pred CcEEEecCccchhHhh----hcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEeeecCCh
Q 009796 301 LEDLSIISLETLERIM----ISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDT 376 (525)
Q Consensus 301 Le~L~L~~c~~l~~~~----~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~ 376 (525)
|++|+++++.. +.+. ..+++|+.|+++++. +..+.. ..+ ......+.++.+++.. ..+.+
T Consensus 200 L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~--~~l-----------~~~~~~~~l~~l~L~~-~~l~~ 263 (353)
T 2z80_A 200 VSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTD-LDTFHF--SEL-----------STGETNSLIKKFTFRN-VKITD 263 (353)
T ss_dssp EEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCB-CTTCCC--C-----------------CCCCCCEEEEES-CBCCH
T ss_pred CCeecCCCCcc-ccchhhhhhhcccccEEECCCCc-cccccc--ccc-----------ccccccchhhcccccc-ccccC
Confidence 77777766542 1111 112344444444321 111000 000 0011245677777775 34444
Q ss_pred hccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeec
Q 009796 377 HWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLY 435 (525)
Q Consensus 377 ~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~ 435 (525)
.....++..+..+++|++|+++.|.... +|+. .+..+++|++|+|.+|...
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~---i~~~-----~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKS---VPDG-----IFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCC---CCTT-----TTTTCTTCCEEECCSSCBC
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCc---cCHH-----HHhcCCCCCEEEeeCCCcc
Confidence 3333456678899999999999887662 5522 1356899999999998443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=7.6e-16 Score=165.00 Aligned_cols=287 Identities=19% Similarity=0.138 Sum_probs=202.6
Q ss_pred cCCeEEEEEeecCCCCcccCCccc-cCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTI-FSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
.+++.+++.. .....+|..+ ..+++|++|+|++|.+.. +..+..+++|++|+|++|.++. ..+..++++++|
T Consensus 51 ~~l~~l~l~~----~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 125 (597)
T 3oja_B 51 NNQKIVTFKN----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLL 125 (597)
T ss_dssp CCCSEEEESS----CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCceEEEeeC----CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCC
Confidence 5788888754 2345566654 458999999999999887 4578899999999999998843 223456889999
Q ss_pred cEEEEeecCCCceee---cccCCCccEEEEeeec-cccce-EEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCC
Q 009796 211 EDLSFFYCFGLKRLR---ISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLP 284 (525)
Q Consensus 211 e~L~L~~c~~l~~l~---i~~l~~L~~L~l~~c~-~~l~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~ 284 (525)
++|+|++|.. ..++ +.++++|+.|++++|. ..+.. ....+++|++|+++++. ... .++.+++|+.|+++++
T Consensus 126 ~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSS
T ss_pred CEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccC
Confidence 9999999864 3333 3568999999999986 22221 12257899999999987 222 4678899999999998
Q ss_pred CCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC----cccc
Q 009796 285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP----IVST 358 (525)
Q Consensus 285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~----~~~~ 358 (525)
.+++ +...++|+.|+++++..-.......++|+.|+++++. .... ....++|+.|.++++.+. ..+.
T Consensus 203 ~l~~------l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 203 LLST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CCSE------EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cccc------ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChh-hccCCCCCEEECCCCccCCCCHHHhc
Confidence 8776 3456789999999875322222234689999998853 2222 246789999999998764 4556
Q ss_pred cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCC
Q 009796 359 NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDV 438 (525)
Q Consensus 359 ~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 438 (525)
.+++|+.|+++. +.+.. +......+++|+.|+|+.|.... +|+ .+..+++|++|.|.+|.+..-
T Consensus 276 ~l~~L~~L~Ls~-N~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~---i~~------~~~~l~~L~~L~L~~N~l~~~- 339 (597)
T 3oja_B 276 KMQRLERLYISN-NRLVA-----LNLYGQPIPTLKVLDLSHNHLLH---VER------NQPQFDRLENLYLDHNSIVTL- 339 (597)
T ss_dssp TCSSCCEEECTT-SCCCE-----EECSSSCCTTCCEEECCSSCCCC---CGG------GHHHHTTCSEEECCSSCCCCC-
T ss_pred CccCCCEEECCC-CCCCC-----CCcccccCCCCcEEECCCCCCCc---cCc------ccccCCCCCEEECCCCCCCCc-
Confidence 789999999974 22222 12233568899999999887662 442 345678999999998844321
Q ss_pred CchhHHHHHHhHhhhccccceee
Q 009796 439 VPSEYEILLDDLFWIFYPKNLCL 461 (525)
Q Consensus 439 ~~~~~~~~~~~Ll~~~~l~~l~l 461 (525)
.+-..+.+++|.+
T Consensus 340 ----------~~~~~~~L~~L~l 352 (597)
T 3oja_B 340 ----------KLSTHHTLKNLTL 352 (597)
T ss_dssp ----------CCCTTCCCSEEEC
T ss_pred ----------ChhhcCCCCEEEe
Confidence 1223457888888
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=2e-15 Score=160.75 Aligned_cols=172 Identities=13% Similarity=0.011 Sum_probs=84.8
Q ss_pred CCCCccEEEeeCCCCChhh-hhhhhcCCCCCcEEEecCccchh--HhhhcCcccceEccccccchh----hhcccCCCcc
Q 009796 272 ECPHLRKLVLFLPHFNDQE-FHPLISKFPLLEDLSIISLETLE--RIMISSNRLMHLEVYNCSGLN----RINVDAPNLV 344 (525)
Q Consensus 272 ~l~~L~~L~L~~~~~~~~~-~~~ll~~~~~Le~L~L~~c~~l~--~~~~~~~~L~~L~l~~c~~L~----~l~~~~p~L~ 344 (525)
.+++|+.|+++++.+++.. ....+.++++|++|+++++.... .....+++|+.|++.++.-.. ......++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 4444555555444444321 12233445555555555543211 001123455555555532110 1123456666
Q ss_pred eEEEecCCCC----cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCC
Q 009796 345 SFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPL 420 (525)
Q Consensus 345 ~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~ 420 (525)
.|.++++.+. ..+..+++|+.++++. +.+. ...++..+..+++|+.|+++.|..... .| . .+..
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~---~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~-----~-~~~~ 492 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQ---ENFLPDIFTELRNLTFLDLSQCQLEQL--SP-----T-AFNS 492 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTT-CEEG---GGEECSCCTTCTTCCEEECTTSCCCEE--CT-----T-TTTT
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcC-CcCc---cccchhhhhcccCCCEEECCCCccccC--Ch-----h-hhhc
Confidence 6666665432 2334566777777653 1111 011223456677778777777665543 23 1 4566
Q ss_pred CcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecC
Q 009796 421 QVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSP 463 (525)
Q Consensus 421 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~~ 463 (525)
+++|++|.|.+|.+.+.. ...+-..+.++++.+..
T Consensus 493 l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVP--------DGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CTTCCEEECCSSCCSCCC--------TTTTTTCTTCCEEECCS
T ss_pred ccCCCEEeCCCCcCCCCC--------HHHhhcccCCcEEEecC
Confidence 788888888877433220 01223345688888743
No 43
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=2.2e-15 Score=149.45 Aligned_cols=250 Identities=15% Similarity=0.179 Sum_probs=154.7
Q ss_pred HHHHHHHHc-CCeEEEEEeecCCCCcccCCccccCC--CCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHH
Q 009796 126 KWVELAMEN-GVKELDFEVITDKNSVNALPQTIFSA--KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQ 201 (525)
Q Consensus 126 ~wl~~~~~~-~l~~L~l~~~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~ 201 (525)
+|-..+..+ .++.+++.. ... -+..+... ++++.|+++++.+.. ++....+++|++|+|++|.+++..+.
T Consensus 38 ~W~~~~~~~~~~~~l~l~~--~~~----~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 38 RWYRLASDESLWQTLDLTG--KNL----HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp HHHHHHTCSTTSSEEECTT--CBC----CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH
T ss_pred HHHHHhcCchhheeecccc--ccC----CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH
Confidence 455444322 477777654 111 13444455 899999999998887 55577899999999999999877788
Q ss_pred HHHhCCcCccEEEEeecCCCcee--ecccCCCccEEEEeeec--c--ccceEEEeCCCccEEEeccc-c-c--cceeecc
Q 009796 202 SLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRFTY--Q--ELESVEIAVPSLQQLELSFS-R-V--PRLLDVA 271 (525)
Q Consensus 202 ~ll~~c~~Le~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~--~--~l~~~~~~~~~L~~L~l~~~-~-~--~~~~~~~ 271 (525)
..+..|++|++|++++|...... .+..+++|++|++++|. . .+..+...+++|++|++++| . . ..+..++
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 99999999999999999642221 24457888888888884 1 12222235777777777777 4 1 1344466
Q ss_pred CCC-CccEEEeeCC--CCChhhhhhhhcCCCCCcEEEecCccchhHhh----hcCcccceEccccccchhhhcccCCCcc
Q 009796 272 ECP-HLRKLVLFLP--HFNDQEFHPLISKFPLLEDLSIISLETLERIM----ISSNRLMHLEVYNCSGLNRINVDAPNLV 344 (525)
Q Consensus 272 ~l~-~L~~L~L~~~--~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~----~~~~~L~~L~l~~c~~L~~l~~~~p~L~ 344 (525)
.++ +|+.|+++++ .+++..+...+.++++|++|++++|..++... ..+++|++|++++|..+..-.
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------- 264 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET------- 264 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-------
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-------
Confidence 677 7777777777 56655566666777777777777765432211 113445555554443211000
Q ss_pred eEEEecCCCCcccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeee
Q 009796 345 SFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVL 405 (525)
Q Consensus 345 ~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~ 405 (525)
...+.++++|+.++++++ +. ...+..+...++.| +++.+.....
T Consensus 265 ---------~~~l~~~~~L~~L~l~~~--i~---~~~~~~l~~~l~~L---~l~~n~l~~~ 308 (336)
T 2ast_B 265 ---------LLELGEIPTLKTLQVFGI--VP---DGTLQLLKEALPHL---QINCSHFTTI 308 (336)
T ss_dssp ---------GGGGGGCTTCCEEECTTS--SC---TTCHHHHHHHSTTS---EESCCCSCCT
T ss_pred ---------HHHHhcCCCCCEEeccCc--cC---HHHHHHHHhhCcce---EEecccCccc
Confidence 012345778888888642 21 11233343444444 5776665544
No 44
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.56 E-value=4e-14 Score=151.05 Aligned_cols=255 Identities=19% Similarity=0.149 Sum_probs=185.8
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
.+++.|++.. .....+|..+. ++|++|+|++|.+.. +. .+++|++|+|++|.++. ++. .+++|++
T Consensus 40 ~~l~~L~ls~----n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGE----SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLE 105 (622)
T ss_dssp HCCCEEECCS----SCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCE
T ss_pred CCCcEEEecC----CCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCE
Confidence 4788888765 23347777665 799999999999887 43 68999999999998842 222 6899999
Q ss_pred EEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796 213 LSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (525)
Q Consensus 213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 291 (525)
|++++|.. ..++. .+++|+.|++++|. +..+....++|++|++++|. ...+ ..+++|+.|+++++.++. +
T Consensus 106 L~Ls~N~l-~~l~~-~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~~--l 176 (622)
T 3g06_A 106 LSIFSNPL-THLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTS--L 176 (622)
T ss_dssp EEECSCCC-CCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--C
T ss_pred EECcCCcC-CCCCC-CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCCC--C
Confidence 99998853 33333 46899999999885 44444456999999999997 3222 245789999999998886 3
Q ss_pred hhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEee
Q 009796 292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNF 371 (525)
Q Consensus 292 ~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~ 371 (525)
+ ..+++|+.|+++++. ++.+....++|+.|.+.++. +..+....++|+.|.++++.+......+++|+.+++++
T Consensus 177 ~---~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~- 250 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG- 250 (622)
T ss_dssp C---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS-
T ss_pred c---ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCC-
Confidence 3 567899999999875 44444445789999988753 55555556889999999887652114578899999985
Q ss_pred ecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796 372 GDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 372 ~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
+.+.. ++ ..+++|+.|+++.|.+. . +|+ .+..+++|+.|.|.+|.+
T Consensus 251 N~L~~-----lp---~~~~~L~~L~Ls~N~L~--~-lp~------~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 251 NRLTS-----LP---MLPSGLLSLSVYRNQLT--R-LPE------SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp SCCSC-----CC---CCCTTCCEEECCSSCCC--S-CCG------GGGGSCTTCEEECCSCCC
T ss_pred CCCCc-----CC---cccccCcEEeCCCCCCC--c-CCH------HHhhccccCEEEecCCCC
Confidence 33321 11 26789999999988766 2 552 355679999999999843
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=3e-14 Score=151.51 Aligned_cols=123 Identities=14% Similarity=0.077 Sum_probs=67.0
Q ss_pred cCCCCCcEEEecCccchhHhh---hcCcccceEcccccc--chhh---hcccCCCcceEEEecCCCC-----cccccCCC
Q 009796 296 SKFPLLEDLSIISLETLERIM---ISSNRLMHLEVYNCS--GLNR---INVDAPNLVSFDFEDNPIP-----IVSTNAPC 362 (525)
Q Consensus 296 ~~~~~Le~L~L~~c~~l~~~~---~~~~~L~~L~l~~c~--~L~~---l~~~~p~L~~l~~~g~~~~-----~~~~~~~~ 362 (525)
..+++|++|+++++.....+. ...++|+.|+++++. .+.. .....++|+.|+++++.+. ..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 466777777777664322111 224567777777642 1111 1234577777777766542 12334677
Q ss_pred CceEEEEeeecCChhccccHHHHHHhc-cccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeec
Q 009796 363 PLNVLFSNFGDIDTHWYLNLMEFIGAF-NQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLY 435 (525)
Q Consensus 363 L~~l~l~~~~~~~~~~~~~l~~~l~~l-~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~ 435 (525)
|+.++++. +.+.. ..+..+ ++|+.|+++.|... . +|+ .+..+++|++|+|.+|.+.
T Consensus 430 L~~L~l~~-n~l~~-------~~~~~l~~~L~~L~L~~N~l~--~-ip~------~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 430 ILVLNLSS-NMLTG-------SVFRCLPPKVKVLDLHNNRIM--S-IPK------DVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCEEECCS-SCCCG-------GGGSSCCTTCSEEECCSSCCC--C-CCT------TTTSSCCCSEEECCSSCCC
T ss_pred CCEEECCC-CCCCc-------chhhhhcCcCCEEECCCCcCc--c-cCh------hhcCCCCCCEEECCCCCCC
Confidence 77777764 22221 112233 57777777766554 2 442 3335677777777776443
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.55 E-value=7.6e-15 Score=154.60 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=67.8
Q ss_pred cCCeEEEEEeecCCCCcccCC-ccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
.++++|+++. + ....++ ..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++. ++.. .+++|
T Consensus 21 ~~L~~L~Ls~--n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQ--N--YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCS--S--CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCC
T ss_pred ccccEEECCC--C--cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCc
Confidence 4666666654 1 122233 355566777777777776665 4456667777777777776631 2221 56777
Q ss_pred cEEEEeecCCCc-e--eecccCCCccEEEEeeeccccceEE-EeCCCc--cEEEecccc
Q 009796 211 EDLSFFYCFGLK-R--LRISEAHKLKSLILRFTYQELESVE-IAVPSL--QQLELSFSR 263 (525)
Q Consensus 211 e~L~L~~c~~l~-~--l~i~~l~~L~~L~l~~c~~~l~~~~-~~~~~L--~~L~l~~~~ 263 (525)
++|++++|.... . -.+..+++|+.|++++|. +.... ..+++| +.|+++++.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH--LEKSSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS--CCGGGGGGGTTSCEEEEEEEECT
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcc--cchhhccccccceeeEEEeeccc
Confidence 777777765432 1 234456677777777764 21111 134555 777776653
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=154.73 Aligned_cols=245 Identities=15% Similarity=0.114 Sum_probs=123.7
Q ss_pred ccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCcc
Q 009796 155 QTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLK 233 (525)
Q Consensus 155 ~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~ 233 (525)
..+..+++|++|++++|.+.. +..+..+ +|++|++++|.+.. ++. ..+++|++|++.+|..........+++|+
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~ 350 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350 (570)
T ss_dssp TTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred hhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCccccccccccCCCCC
Confidence 333444555555555554444 3344444 55555555554421 111 24455555555555433333333445555
Q ss_pred EEEEeeeccccceEE------EeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEe
Q 009796 234 SLILRFTYQELESVE------IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI 306 (525)
Q Consensus 234 ~L~l~~c~~~l~~~~------~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L 306 (525)
.|++++|. +..+. ..+++|++|+++++. ...+..+..+++|+.|+++++.+++......+.++++|++|++
T Consensus 351 ~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 351 FLDLSRNG--LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp EEECCSSC--CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred EEeCcCCc--cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 55555543 11110 134555555555554 2222234555555555555554443222223444555555555
Q ss_pred cCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCC-----CcccccCCCCceEEEEeeecCChhcccc
Q 009796 307 ISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI-----PIVSTNAPCPLNVLFSNFGDIDTHWYLN 381 (525)
Q Consensus 307 ~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 381 (525)
++|...... .......++|+.|.+.++.+ |..+..+++|+.++++. +.+.. .
T Consensus 429 ~~n~l~~~~------------------~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~-n~l~~----~ 485 (570)
T 2z63_A 429 SHTHTRVAF------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQ----L 485 (570)
T ss_dssp TTSCCEECC------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCE----E
T ss_pred cCCcccccc------------------hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC-Ccccc----C
Confidence 544321110 11112345555555555432 33455688889998874 22222 2
Q ss_pred HHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccC
Q 009796 382 LMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMD 437 (525)
Q Consensus 382 l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 437 (525)
.+..+..+++|+.|+++.|..... .| . .+..+++|+.|++.+|....+
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~--~~-----~-~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSV--PD-----G-IFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCC--CT-----T-TTTTCTTCCEEECCSSCBCCC
T ss_pred ChhhhhcccCCCEEeCCCCcCCCC--CH-----H-HhhcccCCcEEEecCCcccCC
Confidence 234457889999999998766543 22 1 356789999999999866554
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.54 E-value=7.9e-15 Score=145.10 Aligned_cols=248 Identities=14% Similarity=0.053 Sum_probs=122.7
Q ss_pred ccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeeccc
Q 009796 151 NALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISE 228 (525)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~ 228 (525)
..+|..+. ++|+.|+|++|.+.. +..+.++++|++|+|++|.++.- .+..+..+++|++|++++|.. ..++..-
T Consensus 44 ~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~ 119 (330)
T 1xku_A 44 EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL-KELPEKM 119 (330)
T ss_dssp CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCC-SBCCSSC
T ss_pred cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcC-CccChhh
Confidence 34554432 567777777777766 33566777777777777766321 123356677777777777642 2332222
Q ss_pred CCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-c---cceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCc
Q 009796 229 AHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-V---PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE 302 (525)
Q Consensus 229 l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~---~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le 302 (525)
.++|+.|++++|. ..+..- ...+++|+.|+++++. . ..+..++.+++|+.|+++++.++. ++..+ .++|+
T Consensus 120 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~--~~~L~ 195 (330)
T 1xku_A 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGL--PPSLT 195 (330)
T ss_dssp CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSSC--CTTCS
T ss_pred cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCccc--cccCC
Confidence 3566666666553 111110 1134555555555554 1 222334455555555555555443 11111 14555
Q ss_pred EEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhc
Q 009796 303 DLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHW 378 (525)
Q Consensus 303 ~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~ 378 (525)
+|+++++.. +.+. .......++|+.|.++++.+. ..+..+++|+.++++. +.+.
T Consensus 196 ~L~l~~n~l-~~~~-----------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~--- 253 (330)
T 1xku_A 196 ELHLDGNKI-TKVD-----------------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLV--- 253 (330)
T ss_dssp EEECTTSCC-CEEC-----------------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCS---
T ss_pred EEECCCCcC-CccC-----------------HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC-CcCc---
Confidence 555554321 0000 011123455555555555442 1344566777777764 2222
Q ss_pred cccHHHHHHhccccceEEEEEEeeeeeeeeccccccC-CCCCCCcccceEEEEEee
Q 009796 379 YLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCH-PSLPLQVESLSLFMESFS 433 (525)
Q Consensus 379 ~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~-~~~~~~~~L~~L~L~~~~ 433 (525)
.++..+..+++|++|+++.|.+.. +|...+.. ........++.|.+.+|.
T Consensus 254 --~lp~~l~~l~~L~~L~l~~N~i~~---~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 254 --KVPGGLADHKYIQVVYLHNNNISA---IGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp --SCCTTTTTCSSCCEEECCSSCCCC---CCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred --cCChhhccCCCcCEEECCCCcCCc---cChhhcCCcccccccccccceEeecCc
Confidence 122234566777777777665543 22222211 011234666777777663
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.52 E-value=1.7e-14 Score=141.83 Aligned_cols=225 Identities=14% Similarity=0.126 Sum_probs=113.1
Q ss_pred CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796 161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR 238 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~ 238 (525)
++|++|+|++|.+.. +..+..+++|++|+|++|.++... . +..+++|++|++++|. +..+. ..++|+.|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc--CCCCcCEEECC
Confidence 345555555555444 123444555555555555442110 0 3445555555555543 12221 12555555555
Q ss_pred eeccccceEEE-eCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHh
Q 009796 239 FTYQELESVEI-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI 315 (525)
Q Consensus 239 ~c~~~l~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~ 315 (525)
+|. +..+.. .+++|++|+++++. ...+..++.+++|+.|+++++.+++.....+...+++|++|+++++.. +.+
T Consensus 108 ~n~--l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~ 184 (317)
T 3o53_A 108 NNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDV 184 (317)
T ss_dssp SSC--CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEE
T ss_pred CCc--cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-ccc
Confidence 553 222221 34556666666655 222334555666666666666665543334444556666666665532 111
Q ss_pred h--hcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC---cccccCCCCceEEEEeeecCChhccccHHHHHHh
Q 009796 316 M--ISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP---IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGA 388 (525)
Q Consensus 316 ~--~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~ 388 (525)
. ...++|+.|+++++. .+..-....++|+.|.++++.+. ..+..+++|+.+++++ +.+. ...+..++..
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~-N~~~---~~~~~~~~~~ 260 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFH---CGTLRDFFSK 260 (317)
T ss_dssp ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT-CCCB---HHHHHHHHHT
T ss_pred ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC-CCcc---CcCHHHHHhc
Confidence 0 113455556555532 11111224566777777776553 3344577888888874 2222 1346677788
Q ss_pred ccccceEEEE
Q 009796 389 FNQIGELHLS 398 (525)
Q Consensus 389 l~~L~~L~L~ 398 (525)
+++|+.|.+.
T Consensus 261 ~~~L~~l~l~ 270 (317)
T 3o53_A 261 NQRVQTVAKQ 270 (317)
T ss_dssp CHHHHHHHHH
T ss_pred cccceEEECC
Confidence 8888877766
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=4.8e-14 Score=137.82 Aligned_cols=220 Identities=16% Similarity=0.111 Sum_probs=153.0
Q ss_pred CcccCCccccCCCCccEEEecCCcCCC-CC-CCCCCCcccEEEeceeeech-HHHHHHHhCCcCccEEEEeecCCCce-e
Q 009796 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PS-HCANLQSLKKLSLDEVYVND-QMVQSLVRECRVLEDLSFFYCFGLKR-L 224 (525)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~-~~l~~ll~~c~~Le~L~L~~c~~l~~-l 224 (525)
....+|..+. ++|++|+|++|.+.. +. .+.++++|++|+|++|.++. ......+..+++|++|++++|....- .
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~ 95 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 95 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE
T ss_pred CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh
Confidence 3455666543 689999999999887 43 46889999999999998732 11223355789999999999864221 1
Q ss_pred ecccCCCccEEEEeeec-cccce--EEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCC
Q 009796 225 RISEAHKLKSLILRFTY-QELES--VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFP 299 (525)
Q Consensus 225 ~i~~l~~L~~L~l~~c~-~~l~~--~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~ 299 (525)
.+..+++|+.|++++|. ..+.. ....+++|++|+++++. ...+..++.+++|+.|+++++.+++...+..+..++
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 24568999999999886 22222 22357899999999987 334456788899999999999887654666788899
Q ss_pred CCcEEEecCccchh---HhhhcCcccceEcccccc--chhh-hcccCCCcceEEEecCCCC----cccccC-CCCceEEE
Q 009796 300 LLEDLSIISLETLE---RIMISSNRLMHLEVYNCS--GLNR-INVDAPNLVSFDFEDNPIP----IVSTNA-PCPLNVLF 368 (525)
Q Consensus 300 ~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~--~L~~-l~~~~p~L~~l~~~g~~~~----~~~~~~-~~L~~l~l 368 (525)
+|+.|+++++.... ......++|+.|+++++. .+.. .....++|+.|+++++.+. ..+..+ ++|+.+++
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 99999999875321 112235788888888753 1211 1234678888888887653 233345 47888888
Q ss_pred Ee
Q 009796 369 SN 370 (525)
Q Consensus 369 ~~ 370 (525)
++
T Consensus 256 ~~ 257 (306)
T 2z66_A 256 TQ 257 (306)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=1.8e-14 Score=150.14 Aligned_cols=226 Identities=14% Similarity=0.131 Sum_probs=143.9
Q ss_pred CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796 161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR 238 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~ 238 (525)
++|++|+|++|.+.. +..+..+++|++|+|++|.++... + +..+++|++|+|++|. +..+.. .++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~~--~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELLV--GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEEE--CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCCC--CCCcCEEECc
Confidence 477778887777766 345677777888888777763211 1 6677778888877774 233322 3778888887
Q ss_pred eeccccceEE-EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHh
Q 009796 239 FTYQELESVE-IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI 315 (525)
Q Consensus 239 ~c~~~l~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~ 315 (525)
+|. +..+. ..+++|+.|++++|. ...+..++.+++|+.|+|++|.+++.....+..++++|+.|+|+++......
T Consensus 108 ~N~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSC--CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCc--CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 774 33332 246778888888877 3345567778888888888888877544555557788888888876521111
Q ss_pred -hhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC---cccccCCCCceEEEEeeecCChhccccHHHHHHhc
Q 009796 316 -MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP---IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAF 389 (525)
Q Consensus 316 -~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l 389 (525)
...+++|+.|+++++. .+..-....++|+.|.++++.+. ..+..+++|+.+++++ +.+. ...++.++..+
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~-N~l~---c~~~~~~~~~l 261 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFH---CGTLRDFFSKN 261 (487)
T ss_dssp CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT-CCBC---HHHHHHHHTTC
T ss_pred ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC-CCCc---CcchHHHHHhC
Confidence 1125677778777643 12111235678888888887653 3444678899999874 2222 23455667777
Q ss_pred cccceEEEE
Q 009796 390 NQIGELHLS 398 (525)
Q Consensus 390 ~~L~~L~L~ 398 (525)
+.|+.+.+.
T Consensus 262 ~~L~~l~~~ 270 (487)
T 3oja_A 262 QRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHH
T ss_pred CCCcEEecc
Confidence 777766553
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=142.08 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=130.9
Q ss_pred cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
.++++|++.. + ....+|. .+..+++|++|++++|.+.. +..+.++++|++|+|++|.++. .....+.++++|
T Consensus 52 ~~L~~L~l~~--n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSN--N--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTT--S--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTC
T ss_pred ccCcEEECCC--C--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccC
Confidence 4789998865 2 2334554 67789999999999999887 4568899999999999998853 223457899999
Q ss_pred cEEEEeecCCCc--e-eecccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc--ccceeeccCCCCccEEEe
Q 009796 211 EDLSFFYCFGLK--R-LRISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVL 281 (525)
Q Consensus 211 e~L~L~~c~~l~--~-l~i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L 281 (525)
++|++++|.... . -.+..+++|+.|++++|. .+..+. ..+++|++|+++++. ...+..++.+++|+.|++
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 999999985432 1 134568999999999984 233331 257899999999998 334567889999999999
Q ss_pred eCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796 282 FLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 282 ~~~~~~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
+++.++.. ....+..+++|+.|+++++.
T Consensus 206 ~~n~l~~~-~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 206 HMKQHILL-LEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp ECSCSTTH-HHHHHHHTTTEEEEEEESCB
T ss_pred CCCccccc-hhhhhhhcccccEEECCCCc
Confidence 99998653 34456678999999999875
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.48 E-value=6.2e-14 Score=152.61 Aligned_cols=269 Identities=16% Similarity=0.126 Sum_probs=129.8
Q ss_pred ccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--eecccCCCc
Q 009796 157 IFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LRISEAHKL 232 (525)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~i~~l~~L 232 (525)
+..+++|++|+|++|.+.. +..+.++++|++|+|++|.+..- ....++++++|++|++++|..... -.+.++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 4445555555555555544 33344555555555555544210 111244555555555555532111 123344555
Q ss_pred cEEEEeeec-cccc-eEEEeCCCccEEEecccc--ccceee--ccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEe
Q 009796 233 KSLILRFTY-QELE-SVEIAVPSLQQLELSFSR--VPRLLD--VAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI 306 (525)
Q Consensus 233 ~~L~l~~c~-~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L 306 (525)
+.|++++|. .... .....+++|++|+++++. ...+.. ...+++|+.|+++++.+++. ....+..+++|+.|++
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB-CTTGGGGSSEECEEEC
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc-Chhhhhhhhhhhhhhc
Confidence 555555553 1111 111134555555555554 111111 12335555555555554442 2233444555555555
Q ss_pred cCccchhHh------hhcCcccceEccccccch----hhh-cccCCCcceEEEecCCCC----cccccCCCCceEEEEee
Q 009796 307 ISLETLERI------MISSNRLMHLEVYNCSGL----NRI-NVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNF 371 (525)
Q Consensus 307 ~~c~~l~~~------~~~~~~L~~L~l~~c~~L----~~l-~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~ 371 (525)
.++...... ....++|+.|+++++.-- ..+ ....++|+.|+++++.+. ..+..+++|+.++++.
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~- 281 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY- 281 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC-
Confidence 544321110 012356777777764311 011 011245888888887653 3455678888888874
Q ss_pred ecCChhccccHHHHHHhccccceEEEEEEeeeeee---eeccccccCCCCCCCcccceEEEEEeee
Q 009796 372 GDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLF---NIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 372 ~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~---~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
+.+. ......+..+++|+.|+++.+.....+ .+|. +... .+..+++|++|.+..+..
T Consensus 282 n~l~----~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~-i~~~-~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 282 NNIQ----HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK-IDDF-SFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp CCBS----EECTTTTTTCTTCCEEECTTCBCCC------CCE-ECTT-TTTTCTTCCEEECCSCCB
T ss_pred CccC----ccChhhhcCCCCccEEeccchhhhcccccccccc-cChh-hcccCCCCCEEECCCCcc
Confidence 2222 223344577888888888644322110 0221 1111 456788999999987744
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.48 E-value=2.2e-14 Score=141.96 Aligned_cols=238 Identities=12% Similarity=0.003 Sum_probs=114.4
Q ss_pred CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796 161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR 238 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~ 238 (525)
++|++|++++|.+.. +..+.++++|++|+|++|.++.- ....+.++++|++|++++|.. ..++..-.+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~-------- 123 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHL-VEIPPNLPS-------- 123 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCC-CSCCSSCCT--------
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcC-CccCccccc--------
Confidence 456666666665554 33455666666666666655211 122345556666666655532 122211123
Q ss_pred eeccccceEEEeCCCccEEEecccc-ccc-eeeccCCCCccEEEeeCCCCChh-hhhhhhcCCCCCcEEEecCccchhHh
Q 009796 239 FTYQELESVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQ-EFHPLISKFPLLEDLSIISLETLERI 315 (525)
Q Consensus 239 ~c~~~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~L~~~~~~~~-~~~~ll~~~~~Le~L~L~~c~~l~~~ 315 (525)
+|++|+++++. ... +..++.+++|+.|+++++.++.. .....+..+ +|+.|+++++.. +.+
T Consensus 124 --------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l 187 (332)
T 2ft3_A 124 --------------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL-TGI 187 (332)
T ss_dssp --------------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC-SSC
T ss_pred --------------cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC-Ccc
Confidence 44444444444 111 12244555555555555554321 112223333 555555554431 111
Q ss_pred hh-cCcccceEcccccc--chh-hhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhccccHHHHHH
Q 009796 316 MI-SSNRLMHLEVYNCS--GLN-RINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIG 387 (525)
Q Consensus 316 ~~-~~~~L~~L~l~~c~--~L~-~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~ 387 (525)
.. .+++|+.|+++++. .+. ......++|+.|.++++.+. ..+..+++|+.++++. +.+. .++..+.
T Consensus 188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~-----~lp~~l~ 261 (332)
T 2ft3_A 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLS-----RVPAGLP 261 (332)
T ss_dssp CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS-SCCC-----BCCTTGG
T ss_pred CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC-CcCe-----ecChhhh
Confidence 11 12345555554432 110 11123456666666665542 2345677888888874 2222 1223356
Q ss_pred hccccceEEEEEEeeeeeeeeccccccC-CCCCCCcccceEEEEEee
Q 009796 388 AFNQIGELHLSLNYKQVLFNIDEFRSCH-PSLPLQVESLSLFMESFS 433 (525)
Q Consensus 388 ~l~~L~~L~L~~~~~~~~~~lp~~~~~~-~~~~~~~~L~~L~L~~~~ 433 (525)
.+++|+.|+++.|.+.. +|...... .....+..|+.|.+.+|.
T Consensus 262 ~l~~L~~L~l~~N~l~~---~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITK---VGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GCTTCCEEECCSSCCCB---CCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred cCccCCEEECCCCCCCc---cChhHccccccccccccccceEeecCc
Confidence 78888888888776654 22222111 011235678888888773
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.47 E-value=8e-14 Score=143.59 Aligned_cols=212 Identities=17% Similarity=0.157 Sum_probs=131.8
Q ss_pred CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--
Q 009796 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-- 224 (525)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l-- 224 (525)
....+|..+. ++++.|+|++|.+.. +..+.++++|++|+|++|.+..- ....+.++++|++|+|++|.. ..+
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l-~~~~~ 129 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRL-TTIPN 129 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCC-SSCCT
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcC-CeeCH
Confidence 3455666554 578888888888776 46677888888888888877321 123466788888888888753 222
Q ss_pred -ecccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc--cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhc
Q 009796 225 -RISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR--VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLIS 296 (525)
Q Consensus 225 -~i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~--~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~ 296 (525)
.+..+++|+.|++++|. +..+. ..+++|++|+++++. .. ....+.++++|+.|+++++.++. ++ .+.
T Consensus 130 ~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~ 204 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLT 204 (440)
T ss_dssp TTSCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCT
T ss_pred hHhhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccC
Confidence 24466788888888774 33221 146788888887754 21 22246777888888888877765 22 256
Q ss_pred CCCCCcEEEecCccchh---HhhhcCcccceEccccccchhhh----cccCCCcceEEEecCCCC----cccccCCCCce
Q 009796 297 KFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPIP----IVSTNAPCPLN 365 (525)
Q Consensus 297 ~~~~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~L~~l----~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~ 365 (525)
.+++|+.|+|+++.... .....+++|+.|++.++. +..+ ....++|+.|+++++.+. ..+..+++|+.
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred CCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 67778888887764211 111224566666666532 2111 124567777777776553 22335677777
Q ss_pred EEEEe
Q 009796 366 VLFSN 370 (525)
Q Consensus 366 l~l~~ 370 (525)
++++.
T Consensus 284 L~L~~ 288 (440)
T 3zyj_A 284 IHLHH 288 (440)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 77764
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=3.6e-13 Score=143.68 Aligned_cols=235 Identities=16% Similarity=0.068 Sum_probs=158.1
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
.+++.|++.. + ....+|. .+++|++|+|++|.+.. +. .+++|++|+|++|.++. ++. .+++|++
T Consensus 61 ~~L~~L~L~~--N--~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPD--N--NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCK 125 (622)
T ss_dssp TTCSEEEECS--C--CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCE
T ss_pred CCCcEEEecC--C--CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCE
Confidence 5899999876 2 2335665 46899999999998886 33 78999999999998742 121 5788999
Q ss_pred EEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796 213 LSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (525)
Q Consensus 213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 291 (525)
|++++|.. ..++. .+++|+.|++++|. +..+....++|+.|+++++. ...+ ..+++|+.|++++|.+++ +
T Consensus 126 L~L~~N~l-~~lp~-~l~~L~~L~Ls~N~--l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~--l 196 (622)
T 3g06_A 126 LWIFGNQL-TSLPV-LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS--L 196 (622)
T ss_dssp EECCSSCC-SCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--C
T ss_pred EECCCCCC-CcCCC-CCCCCCEEECcCCc--CCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC--C
Confidence 99988853 33333 25889999999885 33332345788888888887 3333 556788888888887765 2
Q ss_pred hhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC-cccccCCCCceEEEEe
Q 009796 292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP-IVSTNAPCPLNVLFSN 370 (525)
Q Consensus 292 ~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~ 370 (525)
+ ...++|+.|+++++. ++.+...+++|+.|+++++ ++..+....++|+.|.++++.+. +.. .+++|+.+++++
T Consensus 197 ~---~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~-~~~~L~~L~Ls~ 270 (622)
T 3g06_A 197 P---TLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPM-LPSGLLSLSVYR 270 (622)
T ss_dssp C---CCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCS
T ss_pred C---CccchhhEEECcCCc-ccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCc-ccccCcEEeCCC
Confidence 2 234678888887764 3333333467888887764 45555556677888888777654 111 466778888764
Q ss_pred eecCChhccccHHHHHHhccccceEEEEEEeeee
Q 009796 371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQV 404 (525)
Q Consensus 371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~ 404 (525)
+.+. .++..+.++++|+.|+|+.|.+..
T Consensus 271 -N~L~-----~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 271 -NQLT-----RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -SCCC-----SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred -CCCC-----cCCHHHhhccccCEEEecCCCCCC
Confidence 2222 123345677888888887776654
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.46 E-value=8.5e-14 Score=143.90 Aligned_cols=212 Identities=19% Similarity=0.161 Sum_probs=115.9
Q ss_pred cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796 150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-- 225 (525)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-- 225 (525)
...+|..+. ++|++|+|++|.+.. +..+.++++|++|+|++|.+..- ....+.++++|++|+|++|.. ..+.
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~ 141 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWL-TVIPSG 141 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC-SBCCTT
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcC-CccChh
Confidence 344554433 567777777777665 45566777777777777766321 123356677777777777653 2221
Q ss_pred -cccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc--ccc-eeeccCCCCccEEEeeCCCCChhhhhhhhcC
Q 009796 226 -ISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR--VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISK 297 (525)
Q Consensus 226 -i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~--~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~ 297 (525)
+..+++|+.|++++|. +..+. ..+++|++|+++++. ... ...+..+++|+.|+++++.+++ ++ .+..
T Consensus 142 ~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~ 216 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTP 216 (452)
T ss_dssp TSSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-CCTT
T ss_pred hhcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-cccc
Confidence 3346677777777664 22221 145667777776644 111 1235666677777777666654 22 2455
Q ss_pred CCCCcEEEecCccch---hHhhhcCcccceEccccccc--h-hhhcccCCCcceEEEecCCCC----cccccCCCCceEE
Q 009796 298 FPLLEDLSIISLETL---ERIMISSNRLMHLEVYNCSG--L-NRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVL 367 (525)
Q Consensus 298 ~~~Le~L~L~~c~~l---~~~~~~~~~L~~L~l~~c~~--L-~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~ 367 (525)
+++|+.|+|+++... ......+++|+.|+++++.- + .......++|+.|+++++.+. ..+..+++|+.++
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 666777776665321 11112234555555554321 1 111123466666666666542 2233466677777
Q ss_pred EEe
Q 009796 368 FSN 370 (525)
Q Consensus 368 l~~ 370 (525)
++.
T Consensus 297 L~~ 299 (452)
T 3zyi_A 297 LHH 299 (452)
T ss_dssp CCS
T ss_pred ccC
Confidence 753
No 58
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.45 E-value=6.3e-13 Score=131.35 Aligned_cols=252 Identities=13% Similarity=0.090 Sum_probs=128.6
Q ss_pred cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
..++.|++.. + ....++. .+..+++|++|+|++|.+.. +..+..+++|++|+|++|.++. ++. ...++|
T Consensus 52 ~~l~~L~L~~--n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L 123 (330)
T 1xku_A 52 PDTALLDLQN--N--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTL 123 (330)
T ss_dssp TTCCEEECCS--S--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTC
T ss_pred CCCeEEECCC--C--cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccc
Confidence 3566666544 1 1223333 45566677777777766665 4456666777777777666531 111 112566
Q ss_pred cEEEEeecCCCcee--ecccCCCccEEEEeeec-cc--cc-eEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeC
Q 009796 211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QE--LE-SVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFL 283 (525)
Q Consensus 211 e~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~-~~--l~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~ 283 (525)
++|++++|...... .+.++++|+.|++++|. .. .. .....+++|++|+++++. ...+..+ .++|+.|++++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~ 201 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG 201 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTT
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCC
Confidence 66666666432111 13445666666666664 10 11 111235666666666665 2222222 25666666666
Q ss_pred CCCChhhhhhhhcCCCCCcEEEecCccchhH---hhhcCcccceEccccccchhhh---cccCCCcceEEEecCCCC---
Q 009796 284 PHFNDQEFHPLISKFPLLEDLSIISLETLER---IMISSNRLMHLEVYNCSGLNRI---NVDAPNLVSFDFEDNPIP--- 354 (525)
Q Consensus 284 ~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~---~~~~~~~L~~L~l~~c~~L~~l---~~~~p~L~~l~~~g~~~~--- 354 (525)
+.+++. ....+.++++|+.|+++++..... ....+++|+.|+++++. +..+ ....++|+.|.++++.+.
T Consensus 202 n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 202 NKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp SCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CcCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccC
Confidence 666553 233455666666666666532111 11224566666666642 2121 134567777777776553
Q ss_pred -cccc------cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEE
Q 009796 355 -IVST------NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLN 400 (525)
Q Consensus 355 -~~~~------~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~ 400 (525)
..+. ..++++.+++.+ +..... ...+..+..+++++.++++.|
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~-N~~~~~--~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFS-NPVQYW--EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCS-SSSCGG--GSCGGGGTTCCCGGGEEC---
T ss_pred hhhcCCcccccccccccceEeec-Cccccc--ccCccccccccceeEEEeccc
Confidence 1111 135677788764 333221 112234566788888887754
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.45 E-value=3.6e-13 Score=143.19 Aligned_cols=152 Identities=13% Similarity=0.058 Sum_probs=107.6
Q ss_pred cCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc--hhHh---hhcCcccceEccccccchh----hhcccCC
Q 009796 271 AECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LERI---MISSNRLMHLEVYNCSGLN----RINVDAP 341 (525)
Q Consensus 271 ~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~--l~~~---~~~~~~L~~L~l~~c~~L~----~l~~~~p 341 (525)
+.+++|+.|+++++.+++. ....+.++++|+.|+++++.. +..+ ....++|+.|+++++.--. ......+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 6788999999999999874 455678999999999998753 2222 2346889999999864211 1223468
Q ss_pred CcceEEEecCCCCc-ccccC-CCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCC
Q 009796 342 NLVSFDFEDNPIPI-VSTNA-PCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLP 419 (525)
Q Consensus 342 ~L~~l~~~g~~~~~-~~~~~-~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~ 419 (525)
+|+.|.++++.+.. ....+ ++|+.++++. +.+. .++..+..+++|+.|+++.|.... +|+. .+.
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~-N~l~-----~ip~~~~~l~~L~~L~L~~N~l~~---l~~~-----~~~ 494 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHN-NRIM-----SIPKDVTHLQALQELNVASNQLKS---VPDG-----VFD 494 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCS-SCCC-----CCCTTTTSSCCCSEEECCSSCCCC---CCTT-----STT
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCC-CcCc-----ccChhhcCCCCCCEEECCCCCCCC---CCHH-----HHh
Confidence 99999999987642 22233 6899999985 3332 122223488999999999887763 5522 256
Q ss_pred CCcccceEEEEEeeeccC
Q 009796 420 LQVESLSLFMESFSLYMD 437 (525)
Q Consensus 420 ~~~~L~~L~L~~~~~~~~ 437 (525)
.+++|++|+|.+|....+
T Consensus 495 ~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TCTTCCCEECCSCCBCCC
T ss_pred cCCCCCEEEecCCCcCCC
Confidence 789999999999855544
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.45 E-value=2.5e-13 Score=140.41 Aligned_cols=211 Identities=17% Similarity=0.138 Sum_probs=155.3
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
.+++.|++.. + ......|..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+.++++|+
T Consensus 75 ~~l~~L~L~~--n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLME--N-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCS--S-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCC
T ss_pred CCccEEECcC--C-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCC
Confidence 4788888865 2 2222335567789999999999998887 56778899999999999987421 233467899999
Q ss_pred EEEEeecCCCcee---ecccCCCccEEEEeeeccccceEEE----eCCCccEEEeccccccceeeccCCCCccEEEeeCC
Q 009796 212 DLSFFYCFGLKRL---RISEAHKLKSLILRFTYQELESVEI----AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLP 284 (525)
Q Consensus 212 ~L~L~~c~~l~~l---~i~~l~~L~~L~l~~c~~~l~~~~~----~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~ 284 (525)
+|+|++|.. ..+ .+..+++|+.|++++|. .+..+.. .+++|++|++++|.......+..+++|+.|+|++|
T Consensus 151 ~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 151 ELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN 228 (452)
T ss_dssp EEECCSCCC-CEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS
T ss_pred EEECCCCCc-ceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCC
Confidence 999999864 333 24567999999999876 4444432 57899999999998322346888999999999999
Q ss_pred CCChhhhhhhhcCCCCCcEEEecCccchh---HhhhcCcccceEccccccchhhh----cccCCCcceEEEecCC
Q 009796 285 HFNDQEFHPLISKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNP 352 (525)
Q Consensus 285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~L~~l----~~~~p~L~~l~~~g~~ 352 (525)
.+++. ....+.++++|+.|+|+++.... .....+++|+.|+++++. +..+ ....++|+.|.+.+++
T Consensus 229 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 229 HFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 98874 45567889999999999875321 112235789999998752 3322 2346889999998885
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.45 E-value=5.8e-14 Score=137.77 Aligned_cols=191 Identities=12% Similarity=0.032 Sum_probs=140.7
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
.++++|++.. .......+|..+..+++|++|+|++|.+.+ +..+.++++|++|+|++|.+.. .++..+..+++|+
T Consensus 76 ~~L~~L~L~~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLYIGG--INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLV 152 (313)
T ss_dssp TTCSEEEEEE--ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCC
T ss_pred CCCCeeeCCC--CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCC
Confidence 5899999983 123345788889999999999999999975 7778899999999999999853 2345578899999
Q ss_pred EEEEeecCCCcee--ecccCC-CccEEEEeeec-c-ccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCC
Q 009796 212 DLSFFYCFGLKRL--RISEAH-KLKSLILRFTY-Q-ELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP 284 (525)
Q Consensus 212 ~L~L~~c~~l~~l--~i~~l~-~L~~L~l~~c~-~-~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~ 284 (525)
+|++++|.....+ .+..++ +|+.|++++|. . ........++ |+.|+++++. ...+..++.+++|+.|+++++
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 9999999754333 244566 99999999986 1 1111111233 9999999998 456667889999999999999
Q ss_pred CCChhhhhhhhcCCCCCcEEEecCccchhH---hhhcCcccceEccccc
Q 009796 285 HFNDQEFHPLISKFPLLEDLSIISLETLER---IMISSNRLMHLEVYNC 330 (525)
Q Consensus 285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~---~~~~~~~L~~L~l~~c 330 (525)
.+++. +.. +..+++|++|+++++..... .....++|+.|+++++
T Consensus 232 ~l~~~-~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 232 SLAFD-LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp EECCB-GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ceeee-cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 98864 223 67889999999998753212 1222455666666553
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.43 E-value=3.3e-13 Score=139.32 Aligned_cols=237 Identities=17% Similarity=0.087 Sum_probs=129.9
Q ss_pred CCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeee
Q 009796 161 KLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFT 240 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c 240 (525)
++|++|++++|.+...+.+.++++|++|++++|.++. ++. ..++|++|++++|....--.+.++++|+.|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cCC---CcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 4677777777766662246667777777777776532 111 22467777777764322113455677777777777
Q ss_pred ccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcC
Q 009796 241 YQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISS 319 (525)
Q Consensus 241 ~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~ 319 (525)
. +..+....++|++|++++|. ...+ .++.+++|+.|+++++.+++ ++. ..++|+.|+++++. ++.+....
T Consensus 206 ~--l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~-l~~l~~~~ 276 (454)
T 1jl5_A 206 S--LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNY-LTDLPELP 276 (454)
T ss_dssp C--CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSC-CSCCCCCC
T ss_pred c--CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCc-ccccCccc
Confidence 4 22222223577788887777 3333 47777788888887777665 222 24677777777654 22232234
Q ss_pred cccceEccccccchhhhcccCCCcceEEEecCCCCcccccC-CCCceEEEEeeecCChhccccHHHHHHhccccceEEEE
Q 009796 320 NRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNA-PCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLS 398 (525)
Q Consensus 320 ~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~ 398 (525)
++|+.|+++++. +..+....++|+.|.++++.+.. +... ++|+.++++. +.+.. +...+++|++|+++
T Consensus 277 ~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~-N~l~~--------lp~~~~~L~~L~L~ 345 (454)
T 1jl5_A 277 QSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRS-LCDLPPSLEELNVSN-NKLIE--------LPALPPRLERLIAS 345 (454)
T ss_dssp TTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSE-ECCCCTTCCEEECCS-SCCSC--------CCCCCTTCCEEECC
T ss_pred CcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCc-ccCCcCcCCEEECCC-Ccccc--------ccccCCcCCEEECC
Confidence 567777776643 32222223566666666654431 1122 3566666653 22111 11224666666666
Q ss_pred EEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796 399 LNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (525)
Q Consensus 399 ~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (525)
.|.... +| . .+.+|++|++..|.+
T Consensus 346 ~N~l~~---lp-------~--~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 346 FNHLAE---VP-------E--LPQNLKQLHVEYNPL 369 (454)
T ss_dssp SSCCSC---CC-------C--CCTTCCEEECCSSCC
T ss_pred CCcccc---cc-------c--hhhhccEEECCCCCC
Confidence 554431 33 1 245666666665543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.43 E-value=5e-13 Score=137.60 Aligned_cols=212 Identities=14% Similarity=0.103 Sum_probs=152.6
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
.+++.|++.. + ......+..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+..+++|+
T Consensus 64 ~~l~~L~L~~--n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHE--N-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCS--C-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCC
T ss_pred CCCcEEEccC--C-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCc
Confidence 4788888765 2 1122233566788999999999998877 45678899999999999987421 123467889999
Q ss_pred EEEEeecCCCcee---ecccCCCccEEEEeeeccccceEE----EeCCCccEEEeccccccceeeccCCCCccEEEeeCC
Q 009796 212 DLSFFYCFGLKRL---RISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLP 284 (525)
Q Consensus 212 ~L~L~~c~~l~~l---~i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~ 284 (525)
+|+|++|.. ..+ .+..+++|+.|++++|. .+..+. ..+++|++|++++|.......+..+++|+.|+|++|
T Consensus 140 ~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 140 ELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp EEECCSCCC-CEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred eeeCCCCcc-cccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence 999998864 332 24567899999999876 444332 257899999999998222235788999999999999
Q ss_pred CCChhhhhhhhcCCCCCcEEEecCccchh---HhhhcCcccceEccccccchhhh----cccCCCcceEEEecCCC
Q 009796 285 HFNDQEFHPLISKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPI 353 (525)
Q Consensus 285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~L~~l----~~~~p~L~~l~~~g~~~ 353 (525)
.+++. ....+.++++|+.|+|+++.... .....+++|+.|+++++. +..+ ....++|+.+.+.+++.
T Consensus 218 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 218 HLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccCcc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCCc
Confidence 88874 35567889999999999875311 112235789999998853 3222 23568999999998863
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=6.7e-14 Score=137.63 Aligned_cols=232 Identities=13% Similarity=0.025 Sum_probs=154.9
Q ss_pred CccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEee
Q 009796 162 LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRF 239 (525)
Q Consensus 162 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~ 239 (525)
+++.++++.+.+.. ......+++|++|+|++|.++.. ....+..+++|++|++++|.......+..+++|+.|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcC
Confidence 34455555555443 23345678999999999988532 3456789999999999999765555677889999999999
Q ss_pred eccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhc
Q 009796 240 TYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMIS 318 (525)
Q Consensus 240 c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~ 318 (525)
|. +..+. ..++|++|+++++. ... ....+++|+.|+++++.+++. ....+.++++|+.|+++++...
T Consensus 90 n~--l~~l~-~~~~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~------ 157 (317)
T 3o53_A 90 NY--VQELL-VGPSIETLHAANNNISRV--SCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEID------ 157 (317)
T ss_dssp SE--EEEEE-ECTTCCEEECCSSCCSEE--EECCCSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSCCC------
T ss_pred Cc--ccccc-CCCCcCEEECCCCccCCc--CccccCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCCCC------
Confidence 85 44433 45899999999988 222 234578999999999998873 3335677889999999986421
Q ss_pred CcccceEccccccchhhhcccCCCcceEEEecCCCC--cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEE
Q 009796 319 SNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELH 396 (525)
Q Consensus 319 ~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~ 396 (525)
.+.. ..+....++|+.|.++++.+. .....+++|+.++++. +.+... ...+..+++|+.|+
T Consensus 158 -----~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~-N~l~~l-----~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 158 -----TVNF------AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLAFM-----GPEFQSAAGVTWIS 220 (317)
T ss_dssp -----EEEG------GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS-SCCCEE-----CGGGGGGTTCSEEE
T ss_pred -----cccH------HHHhhccCcCCEEECCCCcCcccccccccccCCEEECCC-CcCCcc-----hhhhcccCcccEEE
Confidence 1110 011112334444444444332 1112367888888874 333221 11256889999999
Q ss_pred EEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796 397 LSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (525)
Q Consensus 397 L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~ 432 (525)
++.|.... +| ..+..+++|++|.|.+|
T Consensus 221 L~~N~l~~---l~------~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 221 LRNNKLVL---IE------KALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CTTSCCCE---EC------TTCCCCTTCCEEECTTC
T ss_pred CcCCcccc---hh------hHhhcCCCCCEEEccCC
Confidence 99887663 55 24667899999999988
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.42 E-value=1.8e-13 Score=135.42 Aligned_cols=185 Identities=15% Similarity=0.074 Sum_probs=122.7
Q ss_pred cCCeEEEEEeecCCCCcccC-CccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
.+++.|++.. + ....+ |..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++. ++. ...++|
T Consensus 54 ~~l~~L~l~~--n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQN--N--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSL 125 (332)
T ss_dssp TTCCEEECCS--S--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTC
T ss_pred CCCeEEECCC--C--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccC
Confidence 4788888765 2 12233 4467789999999999998887 5678889999999999998742 221 123799
Q ss_pred cEEEEeecCCCce--eecccCCCccEEEEeeec-cc--cceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCC
Q 009796 211 EDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QE--LESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLP 284 (525)
Q Consensus 211 e~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~-~~--l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~ 284 (525)
++|++++|..... -.+.++++|+.|++++|. .. .....+...+|++|+++++. ...+..+ .++|+.|+++++
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n 203 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHN 203 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSS
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccc--cCCCCEEECCCC
Confidence 9999998864322 225568899999999886 11 11112222288889988887 3333332 268889999888
Q ss_pred CCChhhhhhhhcCCCCCcEEEecCccchhH---hhhcCcccceEcccc
Q 009796 285 HFNDQEFHPLISKFPLLEDLSIISLETLER---IMISSNRLMHLEVYN 329 (525)
Q Consensus 285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~---~~~~~~~L~~L~l~~ 329 (525)
.+++. ....+.++++|+.|+++++..-.. ....+++|+.|++++
T Consensus 204 ~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 204 KIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp CCCCC-CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred cCCcc-CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 88763 234567788889888887642111 112234555555554
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.41 E-value=9.5e-13 Score=135.85 Aligned_cols=267 Identities=15% Similarity=0.092 Sum_probs=169.1
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
.++++|++.. +. ...+| .+..+++|++|++++|.+.. +.. .++|++|++++|.+.. ++ -+.++++|++
T Consensus 131 ~~L~~L~L~~--n~--l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSN--NQ--LEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE--LP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCS--SC--CSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS--CC-CCTTCTTCCE
T ss_pred CCCCEEECcC--CC--CCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc--Cc-cccCCCCCCE
Confidence 4788888765 22 23477 58889999999999999886 332 4699999999998843 33 2688999999
Q ss_pred EEEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhh
Q 009796 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE 290 (525)
Q Consensus 213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~ 290 (525)
|++++|.... ++.. .++|+.|++++|. ..++. ...+++|++|+++++. ...+ ..+++|+.|+++++.+++
T Consensus 200 L~l~~N~l~~-l~~~-~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~---~~~~~L~~L~l~~N~l~~-- 271 (454)
T 1jl5_A 200 IYADNNSLKK-LPDL-PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP---DLPPSLEALNVRDNYLTD-- 271 (454)
T ss_dssp EECCSSCCSS-CCCC-CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCC---SCCTTCCEEECCSSCCSC--
T ss_pred EECCCCcCCc-CCCC-cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccc---ccccccCEEECCCCcccc--
Confidence 9999986432 2211 3689999999996 33332 2268999999999987 3222 234789999999998876
Q ss_pred hhhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEe
Q 009796 291 FHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSN 370 (525)
Q Consensus 291 ~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~ 370 (525)
++. ..++|+.|+++++. ++.+....++|+.|+++++. +..+....++|+.|.++++.+......+++|+.+++++
T Consensus 272 l~~---~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~ 346 (454)
T 1jl5_A 272 LPE---LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASF 346 (454)
T ss_dssp CCC---CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred cCc---ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEECCC
Confidence 232 34889999999875 33332234689999998753 33333223589999998876542111368899999974
Q ss_pred eecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccC------CC-CCCCcccceEEEEEee
Q 009796 371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCH------PS-LPLQVESLSLFMESFS 433 (525)
Q Consensus 371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~------~~-~~~~~~L~~L~L~~~~ 433 (525)
+.+.. ++. .+++|++|+++.|.......+|..+... .. ...+++|++|++.+|.
T Consensus 347 -N~l~~-----lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 347 -NHLAE-----VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp -SCCSC-----CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred -Ccccc-----ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 32221 111 4789999999988776521144221110 00 0012678888888773
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.41 E-value=2.3e-13 Score=132.97 Aligned_cols=240 Identities=16% Similarity=0.073 Sum_probs=155.6
Q ss_pred cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce----eecccCCCccEEEEe
Q 009796 164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR----LRISEAHKLKSLILR 238 (525)
Q Consensus 164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~----l~i~~l~~L~~L~l~ 238 (525)
+.++.+++.+.. |... .++|++|+|++|.++. .....+.++++|++|++++|..... ....++++|+.|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 577888877776 4322 4799999999998842 1223467899999999999864321 223357899999999
Q ss_pred eec-cccceEEEeCCCccEEEecccc-ccce--eeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhH
Q 009796 239 FTY-QELESVEIAVPSLQQLELSFSR-VPRL--LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER 314 (525)
Q Consensus 239 ~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~--~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~ 314 (525)
+|. ..+......+++|++|+++++. ...+ ..+..+++|+.|+++++.+++. ....+.++++|++|+++++.....
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEECCCCccccc
Confidence 986 2233323468899999999987 2222 3678889999999998887653 445577888999999988643221
Q ss_pred hhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhccccHHHHHHhcc
Q 009796 315 IMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFN 390 (525)
Q Consensus 315 ~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~ 390 (525)
... ......++|+.|.++++.+. ..+..+++|+.+++++ +.+... ....+..++
T Consensus 166 ~~~-----------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~----~~~~~~~l~ 223 (306)
T 2z66_A 166 FLP-----------------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSL----DTFPYKCLN 223 (306)
T ss_dssp EEC-----------------SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCSBC----CSGGGTTCT
T ss_pred cch-----------------hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC-CccCcc----ChhhccCcc
Confidence 000 00112334444444444332 2344577888888864 222221 112246789
Q ss_pred ccceEEEEEEeeeeeeeeccccccCCCCCCC-cccceEEEEEeeeccC
Q 009796 391 QIGELHLSLNYKQVLFNIDEFRSCHPSLPLQ-VESLSLFMESFSLYMD 437 (525)
Q Consensus 391 ~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~-~~L~~L~L~~~~~~~~ 437 (525)
+|+.|+++.|..... .| . .+..+ .+|++|+|.+|....+
T Consensus 224 ~L~~L~L~~N~l~~~--~~-----~-~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 224 SLQVLDYSLNHIMTS--KK-----Q-ELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCCEEECTTSCCCBC--SS-----S-SCCCCCTTCCEEECTTCCEECS
T ss_pred cCCEeECCCCCCccc--CH-----H-HHHhhhccCCEEEccCCCeecc
Confidence 999999998876654 22 1 34455 4899999998865544
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.39 E-value=9.1e-13 Score=127.33 Aligned_cols=199 Identities=16% Similarity=0.103 Sum_probs=131.2
Q ss_pred cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee---
Q 009796 150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--- 224 (525)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--- 224 (525)
...+|..+ .++|++|++++|.+.. +..+..+++|++|+|++|.++.- ....+.++++|++|++++|..+..+
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 34556543 3689999999998887 45678899999999999987421 1334678899999999998755544
Q ss_pred ecccCCCccEEEEeeec-cccc-eEEEeCCCccEEEecccc-ccc-eeeccCCCCccEEEeeCCCCChhhhhhhhcCCCC
Q 009796 225 RISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPL 300 (525)
Q Consensus 225 ~i~~l~~L~~L~l~~c~-~~l~-~~~~~~~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~ 300 (525)
.+..+++|+.|++++|. ..+. .....+++|++|+++++. ... ...++.+++|+.|+++++.+++. ....+.++++
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~ 178 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHS 178 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccc
Confidence 34467889999998885 2221 112247888888888887 222 23477888888888888887752 3334677888
Q ss_pred CcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC----cccccCCCCceEEEEe
Q 009796 301 LEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSN 370 (525)
Q Consensus 301 Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~ 370 (525)
|+.|+++++... .+.. ......++|+.|.++++.+. ..+..+++|+.++++.
T Consensus 179 L~~L~l~~n~l~-----------~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 179 LDRLLLHQNRVA-----------HVHP-------HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CCEEECCSSCCC-----------EECT-------TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred cCEEECCCCccc-----------ccCH-------hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 888888875421 1100 00012345555555555432 2244678888888874
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=2.3e-12 Score=126.06 Aligned_cols=162 Identities=15% Similarity=0.175 Sum_probs=88.3
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.++++|++.. + ....+| .+..+++|++|+|++|.+.....+..+++|++|+|++|.+..- . .+..+++|++|
T Consensus 41 ~~L~~L~l~~--~--~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L 112 (308)
T 1h6u_A 41 DGITTLSAFG--T--GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTL 112 (308)
T ss_dssp HTCCEEECTT--S--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEE
T ss_pred CCcCEEEeeC--C--CccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEE
Confidence 4777777654 1 222344 4566777888888887776622267777788888877776321 1 25667777777
Q ss_pred EEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796 214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (525)
Q Consensus 214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 291 (525)
++++|.......+..+++|+.|++++|. ..+.. ...+++|++|++++|. ...+ .+..+++|+.|+++++.+++.
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~-- 188 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI-- 188 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcC--
Confidence 7777754222224455666666666654 11111 1134555555555554 1111 145555555555555555442
Q ss_pred hhhhcCCCCCcEEEecC
Q 009796 292 HPLISKFPLLEDLSIIS 308 (525)
Q Consensus 292 ~~ll~~~~~Le~L~L~~ 308 (525)
.. +..+++|++|++++
T Consensus 189 ~~-l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKN 204 (308)
T ss_dssp GG-GGGCTTCCEEECTT
T ss_pred hh-hcCCCCCCEEEccC
Confidence 11 34445555555554
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.38 E-value=5.1e-13 Score=129.12 Aligned_cols=171 Identities=16% Similarity=0.097 Sum_probs=121.9
Q ss_pred cCCeEEEEEeecCCCCcccCC-ccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceee-echHHHHHHHhCCcC
Q 009796 134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRV 209 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~c~~ 209 (525)
.++++|++.. .....++ ..+..+++|++|+|++|.+.. +..+.++++|++|++++|. +..- ....+..+++
T Consensus 32 ~~l~~L~l~~----n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGR 106 (285)
T ss_dssp TTCSEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTT
T ss_pred CCceEEEeeC----CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcC
Confidence 4788888754 1222344 456678899999999998876 5667889999999999986 4321 1334677899
Q ss_pred ccEEEEeecCCCce--eecccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-ccce-eeccCCCCccEEEeeC
Q 009796 210 LEDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFL 283 (525)
Q Consensus 210 Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~L~~ 283 (525)
|++|++++|..... -.+..+++|+.|++++|. ..+..- ...+++|++|+++++. ...+ ..+..+++|+.|++++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 99999998864332 224567899999999885 222211 1257899999999987 3222 3478889999999999
Q ss_pred CCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796 284 PHFNDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 284 ~~~~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
+.+++. ....+.++++|+.|+++++.
T Consensus 187 n~l~~~-~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 187 NRVAHV-HPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp SCCCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred Cccccc-CHhHccCcccccEeeCCCCc
Confidence 988774 34556788999999998864
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=1.4e-12 Score=127.46 Aligned_cols=185 Identities=17% Similarity=0.218 Sum_probs=107.2
Q ss_pred CCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796 159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR 238 (525)
Q Consensus 159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~ 238 (525)
.+++|++|++++|.+...+.+..+++|++|+|++|.+.+- .. +..+++|++|++++|..-..-.+..+++|+.|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 3566777777777666533556677777777777766321 12 56677777777777653222234456677777777
Q ss_pred eec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc--hhHh
Q 009796 239 FTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LERI 315 (525)
Q Consensus 239 ~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~--l~~~ 315 (525)
+|. ..+.. ...+++|++|+++++.......++.+++|+.|+++++.+++- .. +.++++|+.|+++++.. +..
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCccCcChh-
Confidence 765 22222 124667777777777611112266677777777777766652 22 56677777777776542 111
Q ss_pred hhcCcccceEcccccc--chhhhcccCCCcceEEEecCC
Q 009796 316 MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNP 352 (525)
Q Consensus 316 ~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~ 352 (525)
...+++|++|+++++. .+..+ ...++|+.|.++++.
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~l-~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSPL-ANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGGG-TTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEEccCCccCccccc-cCCCCCCEEEccCCe
Confidence 1234567777776643 22222 345677777776654
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=1.1e-12 Score=136.64 Aligned_cols=207 Identities=20% Similarity=0.189 Sum_probs=150.1
Q ss_pred CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEE
Q 009796 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLS 214 (525)
Q Consensus 135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~ 214 (525)
+++.|+++. + ......|..+..+++|++|+|++|.+.....+..+++|++|+|++|.++. +...++|++|+
T Consensus 35 ~L~~L~Ls~--n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSG--N-PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLH 105 (487)
T ss_dssp GCCEEECCS--S-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEE
T ss_pred CccEEEeeC--C-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEE
Confidence 789999876 2 22223345777899999999999998872238899999999999998843 12348999999
Q ss_pred EeecCCCceeecccCCCccEEEEeeec-cccceEE-EeCCCccEEEecccc--ccceeecc-CCCCccEEEeeCCCCChh
Q 009796 215 FFYCFGLKRLRISEAHKLKSLILRFTY-QELESVE-IAVPSLQQLELSFSR--VPRLLDVA-ECPHLRKLVLFLPHFNDQ 289 (525)
Q Consensus 215 L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~-~~~~~L~~L~l~~~~--~~~~~~~~-~l~~L~~L~L~~~~~~~~ 289 (525)
+++|.. ..+....+++|+.|++++|. ..+.... ..+++|+.|++++|. ...+..+. .+++|+.|+|++|.+++.
T Consensus 106 L~~N~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 106 AANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CCSSCC-CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCcC-CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 999864 33444557999999999997 3333333 358999999999998 32344454 789999999999999873
Q ss_pred hhhhhhcCCCCCcEEEecCccc--hhHhhhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC
Q 009796 290 EFHPLISKFPLLEDLSIISLET--LERIMISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP 354 (525)
Q Consensus 290 ~~~~ll~~~~~Le~L~L~~c~~--l~~~~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~ 354 (525)
.. ...+++|+.|+|+++.. +......+++|+.|+++++. .+.......++|+.|.++++.+.
T Consensus 185 --~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 --KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp --EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred --cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 22 34689999999998753 21122345789999998843 22222234588999999988754
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.36 E-value=7.6e-13 Score=142.44 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=45.4
Q ss_pred CCeEEEEEeecCCCCcccCCcc-ccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 135 GVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 135 ~l~~L~l~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
++++|+|+. .....+|.. +.++++|++|+|++|.+.. +..++++++|++|+|++|.+....++..+..+++|+
T Consensus 101 ~L~~L~Ls~----N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 101 HLSTLILTG----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp TCCEEECTT----CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CCCEEEccC----CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 566666643 122344433 3456677777777766665 234566677777777766653322334455666666
Q ss_pred EEEEeec
Q 009796 212 DLSFFYC 218 (525)
Q Consensus 212 ~L~L~~c 218 (525)
+|++++|
T Consensus 177 ~L~L~~N 183 (635)
T 4g8a_A 177 HLDLSSN 183 (635)
T ss_dssp EEECCSS
T ss_pred hhcccCc
Confidence 6666554
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=4.1e-13 Score=135.74 Aligned_cols=91 Identities=13% Similarity=0.175 Sum_probs=55.6
Q ss_pred ccCCccccCCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceeeec---h---HH---HHHHHhCCcCccEEEE
Q 009796 151 NALPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVN---D---QM---VQSLVRECRVLEDLSF 215 (525)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~---~---~~---l~~ll~~c~~Le~L~L 215 (525)
..++..+..+++|++|+|++|.+.. ...+..+++|++|+|++|.++ + .. +...+..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3455666677788888888887664 123556788888888776431 1 11 2233567788888888
Q ss_pred eecCCCc----ee--ecccCCCccEEEEeeec
Q 009796 216 FYCFGLK----RL--RISEAHKLKSLILRFTY 241 (525)
Q Consensus 216 ~~c~~l~----~l--~i~~l~~L~~L~l~~c~ 241 (525)
++|.... .+ .+..+++|+.|++++|.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 7775432 11 12345667777766664
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=7.3e-13 Score=133.90 Aligned_cols=175 Identities=17% Similarity=0.149 Sum_probs=97.9
Q ss_pred cCCeEEEEEeecCCC---CcccCCccccCCCCccEEEecCCcCCC-----CCC-------CCCCCcccEEEeceeeechH
Q 009796 134 NGVKELDFEVITDKN---SVNALPQTIFSAKLLTSLKLFGCKLEQ-----PSH-------CANLQSLKKLSLDEVYVNDQ 198 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~---~~~~lp~~l~~~~~L~~L~L~~~~l~~-----~~~-------~~~l~~L~~L~L~~~~~~~~ 198 (525)
.++++|++.. +.. ....++..+..+++|++|+|++|.+.. |.. +..+++|++|+|++|.+++.
T Consensus 32 ~~L~~L~L~~--n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIVLSG--NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp SCCCEEECTT--SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCccEEECCC--CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 4788888764 111 111234446678899999998875442 122 25788999999999988443
Q ss_pred ---HHHHHHhCCcCccEEEEeecCCCce----ee--cccC---------CCccEEEEeeec-c--ccceE---EEeCCCc
Q 009796 199 ---MVQSLVRECRVLEDLSFFYCFGLKR----LR--ISEA---------HKLKSLILRFTY-Q--ELESV---EIAVPSL 254 (525)
Q Consensus 199 ---~l~~ll~~c~~Le~L~L~~c~~l~~----l~--i~~l---------~~L~~L~l~~c~-~--~l~~~---~~~~~~L 254 (525)
.+...+..+++|++|+|++|..... +. +..+ ++|+.|++++|. . .+..+ ...+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 3556678899999999988864211 10 1122 566666666664 1 11111 1134555
Q ss_pred cEEEecccccc-------ceeeccCCCCccEEEeeCCCCChh---hhhhhhcCCCCCcEEEecCcc
Q 009796 255 QQLELSFSRVP-------RLLDVAECPHLRKLVLFLPHFNDQ---EFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 255 ~~L~l~~~~~~-------~~~~~~~l~~L~~L~L~~~~~~~~---~~~~ll~~~~~Le~L~L~~c~ 310 (525)
++|++++|... .+..+..+++|+.|+|++|.+++. .+...+..+++|++|+|++|.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 55555555411 111444555555555555555431 123334555555555555543
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.33 E-value=9e-13 Score=126.52 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=122.8
Q ss_pred HcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 133 ~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
..++++|++.. + ....+ ..+..+++|++|++++|.+...+.+..+++|++|+|++|.++.- ....+.++++|++
T Consensus 40 l~~L~~L~l~~--~--~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQIIANN--S--DIKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEECTT--S--CCCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred ccceeeeeeCC--C--Ccccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCE
Confidence 46788888754 1 12223 34677899999999999888766778899999999999987421 2334678899999
Q ss_pred EEEeecCCCceee--cccCCCccEEEEeeec-cccceEE-EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCC
Q 009796 213 LSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELESVE-IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHF 286 (525)
Q Consensus 213 L~L~~c~~l~~l~--i~~l~~L~~L~l~~c~-~~l~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~ 286 (525)
|++++|....... +.++++|+.|++++|. ..+..-. ..+++|+.|++++|. ...+..++.+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 9999886432222 4567899999999885 2222111 257889999999887 22233467888999999998888
Q ss_pred ChhhhhhhhcCCCCCcEEEecCcc
Q 009796 287 NDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 287 ~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
++. ....+.++++|+.|+++++.
T Consensus 194 ~~~-~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 194 KSV-PDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SCC-CTTTTTTCTTCCEEECCSSC
T ss_pred Ccc-CHHHHhCCcCCCEEEccCCC
Confidence 763 34556788899999998864
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.32 E-value=1.8e-13 Score=134.24 Aligned_cols=237 Identities=16% Similarity=0.059 Sum_probs=139.1
Q ss_pred CCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHH-------hCCcCccEEEEeecCCCceee--c--cc
Q 009796 160 AKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLV-------RECRVLEDLSFFYCFGLKRLR--I--SE 228 (525)
Q Consensus 160 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll-------~~c~~Le~L~L~~c~~l~~l~--i--~~ 228 (525)
.++|+.|++++|.+..|..... .|+.|+|+++.+....+...+ .++++|++|++++|......+ + ..
T Consensus 42 ~~~L~~l~l~~n~l~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTEADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTTCCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeecccccccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4678888888887722333322 288888888877322222222 268899999999987543222 2 56
Q ss_pred CCCccEEEEeeec-cccceEEEe-----CCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhh-hh-hh-hcC
Q 009796 229 AHKLKSLILRFTY-QELESVEIA-----VPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQE-FH-PL-ISK 297 (525)
Q Consensus 229 l~~L~~L~l~~c~-~~l~~~~~~-----~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~-~l-l~~ 297 (525)
+++|+.|++++|. ......... .++|++|+++++. ...+..++.+++|+.|++++|.+.+.. .. .+ +.+
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 7899999999886 222211112 2889999999888 333357888999999999998877641 22 22 378
Q ss_pred CCCCcEEEecCccch--hHhh----hcCcccceEccccccchhhhcccCCCcceEEEecCCCC-cccccCCCCceEEEEe
Q 009796 298 FPLLEDLSIISLETL--ERIM----ISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP-IVSTNAPCPLNVLFSN 370 (525)
Q Consensus 298 ~~~Le~L~L~~c~~l--~~~~----~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~ 370 (525)
+++|++|+++++..- ..+. ...++|+.|+++++. +... .+ .....+++|+.++++.
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~----------------~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDA----------------AGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS----------------CCCSCCCCCTTCCEEECTT
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcc----------------cchhhhhhcCCCCEEECCC
Confidence 889999999886421 1111 122455555555432 1110 00 1112355666666653
Q ss_pred eecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009796 371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS 433 (525)
Q Consensus 371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~ 433 (525)
+.+.. ++..+. ++|+.|+++.|.... +| .+..+++|++|.|.+|.
T Consensus 263 -N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~---~p-------~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 263 -TGLKQ-----VPKGLP--AKLSVLDLSYNRLDR---NP-------SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp -SCCSS-----CCSSCC--SEEEEEECCSSCCCS---CC-------CTTTSCEEEEEECTTCT
T ss_pred -CccCh-----hhhhcc--CCceEEECCCCCCCC---Ch-------hHhhCCCCCEEeccCCC
Confidence 22221 111011 677777777665543 22 34556777777777663
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.30 E-value=5.2e-12 Score=118.67 Aligned_cols=154 Identities=14% Similarity=0.088 Sum_probs=99.1
Q ss_pred cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceee-echHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796 150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRVLEDLSFFYCFGLKRLR- 225 (525)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~- 225 (525)
...+|. + .++|++|++++|.+.. +..+.++++|++|++++|. ++.- ....+.++++|++|++++|..+..+.
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 344555 2 2378999999998877 3467789999999999886 5221 11235778899999998855555544
Q ss_pred --cccCCCccEEEEeeec-cccceEEEeCCCcc---EEEeccc-c-ccc-eeeccCCCCcc-EEEeeCCCCChhhhhhhh
Q 009796 226 --ISEAHKLKSLILRFTY-QELESVEIAVPSLQ---QLELSFS-R-VPR-LLDVAECPHLR-KLVLFLPHFNDQEFHPLI 295 (525)
Q Consensus 226 --i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~---~L~l~~~-~-~~~-~~~~~~l~~L~-~L~L~~~~~~~~~~~~ll 295 (525)
+.++++|+.|++++|. ..++. ...+++|+ +|+++++ . ... +..+..+++|+ .|+++++.++.- ....+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhc
Confidence 3357888888888885 33332 12455665 7777777 4 222 22466777777 777777777631 22233
Q ss_pred cCCCCCcEEEecCcc
Q 009796 296 SKFPLLEDLSIISLE 310 (525)
Q Consensus 296 ~~~~~Le~L~L~~c~ 310 (525)
.. ++|+.|+++++.
T Consensus 177 ~~-~~L~~L~L~~n~ 190 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNK 190 (239)
T ss_dssp TT-CEEEEEECTTCT
T ss_pred CC-CCCCEEEcCCCC
Confidence 33 677777777653
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.30 E-value=2.2e-12 Score=123.75 Aligned_cols=168 Identities=14% Similarity=0.076 Sum_probs=120.0
Q ss_pred cCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--cccCCCccEE
Q 009796 158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSL 235 (525)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--i~~l~~L~~L 235 (525)
..+++|+.|.+++|.+.....+..+++|++|+|++|.+.+ +. .+..+++|++|++++|....... +..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 4578999999999998876678889999999999999843 22 46789999999999986432221 4567899999
Q ss_pred EEeeec-cccceE-EEeCCCccEEEecccc-c-cceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc
Q 009796 236 ILRFTY-QELESV-EIAVPSLQQLELSFSR-V-PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (525)
Q Consensus 236 ~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~ 311 (525)
++++|. ..+..- ...+++|++|++++|. . ..+..++.+++|+.|+++++.+++. ....+.++++|+.|+++++..
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcC
Confidence 999886 222211 1257889999999887 2 2233467889999999999888753 345567888999999988642
Q ss_pred hhH---hhhcCcccceEcccc
Q 009796 312 LER---IMISSNRLMHLEVYN 329 (525)
Q Consensus 312 l~~---~~~~~~~L~~L~l~~ 329 (525)
... ....+++|+.|++.+
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHHHHhCCcCCCEEEccC
Confidence 111 111234555555554
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.29 E-value=5.2e-12 Score=121.37 Aligned_cols=137 Identities=15% Similarity=0.081 Sum_probs=93.7
Q ss_pred CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--
Q 009796 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-- 224 (525)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l-- 224 (525)
....+|..+. ++|++|++++|.+.. +..+.++++|++|+|++|.+..- ....+.++++|++|++++|......
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChh
Confidence 3455666543 579999999998887 34778899999999999987321 1234677899999999888642221
Q ss_pred ecccCCCccEEEEeeec-cccceEEE-eCCCccEEEecccc-c--cceeeccCCCCccEEEeeCCCCCh
Q 009796 225 RISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR-V--PRLLDVAECPHLRKLVLFLPHFND 288 (525)
Q Consensus 225 ~i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~-~--~~~~~~~~l~~L~~L~L~~~~~~~ 288 (525)
.+.++++|+.|++.+|. ..+....+ .+++|++|+++++. . ..+..++.+++|+.|+++++.+++
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 24467788888887775 22222222 46777777777776 2 235567777777777777777765
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.29 E-value=1.3e-12 Score=128.04 Aligned_cols=149 Identities=20% Similarity=0.106 Sum_probs=81.8
Q ss_pred CCCCccEEEecCCcCCC--CCCC--CCCCcccEEEeceeeechHHHHHHHhC-----CcCccEEEEeecCCCcee--ecc
Q 009796 159 SAKLLTSLKLFGCKLEQ--PSHC--ANLQSLKKLSLDEVYVNDQMVQSLVRE-----CRVLEDLSFFYCFGLKRL--RIS 227 (525)
Q Consensus 159 ~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~~l~~ll~~-----c~~Le~L~L~~c~~l~~l--~i~ 227 (525)
.+++|++|+|++|.+.+ +..+ ..+++|++|+|++|.++.. +..+.. +++|++|++++|...... .+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 57788888888888775 4443 7788888888888887432 122222 278888888877542211 234
Q ss_pred cCCCccEEEEeeec-cc----cceEE-EeCCCccEEEecccc-cc---ce-eeccCCCCccEEEeeCCCCChhhhhhhhc
Q 009796 228 EAHKLKSLILRFTY-QE----LESVE-IAVPSLQQLELSFSR-VP---RL-LDVAECPHLRKLVLFLPHFNDQEFHPLIS 296 (525)
Q Consensus 228 ~l~~L~~L~l~~c~-~~----l~~~~-~~~~~L~~L~l~~~~-~~---~~-~~~~~l~~L~~L~L~~~~~~~~~~~~ll~ 296 (525)
.+++|+.|++++|. .+ ...+. ..+++|++|++++|. .. .+ ..+..+++|+.|++++|.+++......+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 55666666666664 11 00111 234555555555555 11 11 11234455555665555555432112233
Q ss_pred CCCCCcEEEecCc
Q 009796 297 KFPLLEDLSIISL 309 (525)
Q Consensus 297 ~~~~Le~L~L~~c 309 (525)
.+++|+.|+++++
T Consensus 251 ~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 251 WPSQLNSLNLSFT 263 (312)
T ss_dssp CCTTCCEEECTTS
T ss_pred hcCCCCEEECCCC
Confidence 4455555555554
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.29 E-value=5.3e-12 Score=120.95 Aligned_cols=154 Identities=19% Similarity=0.162 Sum_probs=92.3
Q ss_pred ccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---
Q 009796 151 NALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--- 225 (525)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--- 225 (525)
..+|..+. ++|++|+|++|.+.. +..+.++++|++|+|++|.++. .....+..+++|++|++++|.. ..+.
T Consensus 29 ~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~ 104 (270)
T 2o6q_A 29 TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL-QALPIGV 104 (270)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCC-CCCCTTT
T ss_pred CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcC-CcCCHhH
Confidence 34554443 567888888887766 3356778888888888777632 1123346677888888877753 2222
Q ss_pred cccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-ccce-eeccCCCCccEEEeeCCCCChhhhhhhhcCCCCC
Q 009796 226 ISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLL 301 (525)
Q Consensus 226 i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~L 301 (525)
+.++++|+.|++++|. ..+..- ...+++|++|+++++. ...+ ..++.+++|+.|+++++.++.. ....+.++++|
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 183 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTEL 183 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTC
T ss_pred cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccCCCc
Confidence 3356777777777764 111111 1245677777777766 2222 2356677777777777766552 22335566777
Q ss_pred cEEEecCc
Q 009796 302 EDLSIISL 309 (525)
Q Consensus 302 e~L~L~~c 309 (525)
++|+|+++
T Consensus 184 ~~L~L~~N 191 (270)
T 2o6q_A 184 KTLKLDNN 191 (270)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 77777664
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.28 E-value=1.3e-11 Score=119.55 Aligned_cols=149 Identities=19% Similarity=0.121 Sum_probs=92.8
Q ss_pred ccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEE
Q 009796 157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL 235 (525)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L 235 (525)
+..+++++.++++++.+.. |..+ .++|+.|+|++|.++.- ....+..+++|++|++++|..........+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 3456677777777777765 3333 36777888877776321 123456677778887777653222222456777777
Q ss_pred EEeeec-cccceEEEeCCCccEEEecccc-cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796 236 ILRFTY-QELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL 309 (525)
Q Consensus 236 ~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c 309 (525)
++++|. ..+......+++|++|+++++. .. .+..++.+++|+.|+++++.++.. ....+..+++|+.|+|+++
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCC
Confidence 777775 2222222346777777777777 22 234577778888888887777652 3445567777888877764
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.27 E-value=2.7e-12 Score=125.66 Aligned_cols=180 Identities=21% Similarity=0.134 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEEeecCCCCcccCCccc--cCCCCccEEEecCCcCCC--C----CCCCCCCcccEEEecee
Q 009796 122 PLFDKWVELAMENGVKELDFEVITDKNSVNALPQTI--FSAKLLTSLKLFGCKLEQ--P----SHCANLQSLKKLSLDEV 193 (525)
Q Consensus 122 ~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~L~~~ 193 (525)
..+..........++++|++.. + ......|..+ ..+++|++|+|++|.+.. + .....+++|++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~L~~L~l~~--n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 79 QLLVGALRVLAYSRLKELTLED--L-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA 155 (310)
T ss_dssp HHHHHHHHHHHHSCCCEEEEES--C-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred HHHHHHHHhcccCceeEEEeeC--C-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence 4455555555556788888875 2 2233455555 667888888888887765 1 22246788888888888
Q ss_pred eechHHHHHHHhCCcCccEEEEeecCCCce------eecccCCCccEEEEeeec-cccceE----EEeCCCccEEEeccc
Q 009796 194 YVNDQMVQSLVRECRVLEDLSFFYCFGLKR------LRISEAHKLKSLILRFTY-QELESV----EIAVPSLQQLELSFS 262 (525)
Q Consensus 194 ~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~------l~i~~l~~L~~L~l~~c~-~~l~~~----~~~~~~L~~L~l~~~ 262 (525)
.+... ....++++++|++|+|++|..... ..+..+++|+.|++++|. ..+... ...+++|++|++++|
T Consensus 156 ~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 156 HSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp SSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred Ccchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 77321 223456778888888888864321 122356778888887775 222221 124577777777777
Q ss_pred c--ccceeeccCC---CCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796 263 R--VPRLLDVAEC---PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL 309 (525)
Q Consensus 263 ~--~~~~~~~~~l---~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c 309 (525)
. ...+..++.+ ++|+.|++++|.++. ++..+ +++|+.|+|+++
T Consensus 235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N 282 (310)
T 4glp_A 235 SLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSN 282 (310)
T ss_dssp CCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSC
T ss_pred CCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCC
Confidence 7 2223344444 577777777777763 23222 257777777764
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.27 E-value=8.4e-12 Score=119.55 Aligned_cols=171 Identities=18% Similarity=0.131 Sum_probs=127.4
Q ss_pred cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
.++++|++.. + ....++. .+..+++|++|+|++|.+.. + ..+..+++|++|+|++|.+..- ....+..+++|
T Consensus 37 ~~l~~L~l~~--n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQS--N--KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCS--S--CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSC
T ss_pred CCCCEEECcC--C--CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCC
Confidence 4688888865 2 2334444 56789999999999999887 3 3457899999999999988421 12446789999
Q ss_pred cEEEEeecCCCce--eecccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-cc-ceeeccCCCCccEEEeeCC
Q 009796 211 EDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLP 284 (525)
Q Consensus 211 e~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~ 284 (525)
++|++++|..... -.+..+++|+.|++++|. ..+..- ...+++|++|+++++. .. .+..+..+++|+.|+++++
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 9999999864222 224568999999999996 222221 1257999999999998 32 2335788999999999999
Q ss_pred CCChhhhhhhhcCCCCCcEEEecCcc
Q 009796 285 HFNDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 285 ~~~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
.++.. ....+..+++|+.|+|++++
T Consensus 192 ~l~~~-~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 192 QLKRV-PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cCCcC-CHHHhccccCCCEEEecCCC
Confidence 98863 34557789999999998854
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.26 E-value=6.3e-12 Score=118.07 Aligned_cols=190 Identities=11% Similarity=-0.000 Sum_probs=127.5
Q ss_pred cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCc-CCC--CCCCCCCCcccEEEece-eeechHHHHHHHhCCc
Q 009796 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCK-LEQ--PSHCANLQSLKKLSLDE-VYVNDQMVQSLVRECR 208 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-l~~--~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~c~ 208 (525)
.++++|++.. + ....+|. .+..+++|++|++++|. +.. +..+.++++|++|++++ |.+..- ....+.+++
T Consensus 31 ~~l~~L~l~~--n--~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIE--T--HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELP 105 (239)
T ss_dssp TTCCEEEEES--C--CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCT
T ss_pred CcccEEEEeC--C--cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCC
Confidence 3788888876 2 2334554 55678999999999997 766 34678899999999998 766321 123467899
Q ss_pred CccEEEEeecCCCceeecccCCCcc---EEEEeeeccccceEE----EeCCCcc-EEEecccc-ccceeeccCCCCccEE
Q 009796 209 VLEDLSFFYCFGLKRLRISEAHKLK---SLILRFTYQELESVE----IAVPSLQ-QLELSFSR-VPRLLDVAECPHLRKL 279 (525)
Q Consensus 209 ~Le~L~L~~c~~l~~l~i~~l~~L~---~L~l~~c~~~l~~~~----~~~~~L~-~L~l~~~~-~~~~~~~~~l~~L~~L 279 (525)
+|++|++++|....--.+..+++|+ .|++++|. .+..+. ..+++|+ +|+++++. ...+......++|+.|
T Consensus 106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L 184 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAV 184 (239)
T ss_dssp TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEE
T ss_pred CCCEEeCCCCCCccccccccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEE
Confidence 9999999998643211244567777 99999983 233332 2578999 99999887 3333332233789999
Q ss_pred EeeCCC-CChhhhhhhhcCC-CCCcEEEecCccchhHhhh-cCcccceEcccccc
Q 009796 280 VLFLPH-FNDQEFHPLISKF-PLLEDLSIISLETLERIMI-SSNRLMHLEVYNCS 331 (525)
Q Consensus 280 ~L~~~~-~~~~~~~~ll~~~-~~Le~L~L~~c~~l~~~~~-~~~~L~~L~l~~c~ 331 (525)
+++++. ++.. ....+.++ ++|+.|+++++. ++.+.. .+++|+.|.+.++.
T Consensus 185 ~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 185 YLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp ECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC-
T ss_pred EcCCCCCcccC-CHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCcc
Confidence 999994 7752 34557778 899999999854 222211 34566666665543
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=4.2e-12 Score=122.07 Aligned_cols=170 Identities=21% Similarity=0.194 Sum_probs=116.1
Q ss_pred cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
.++++|+++. .....++. .+..+++|++|++++|.+.. +..+.++++|++|+|++|.+... ....+.++++|
T Consensus 28 ~~l~~L~ls~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTT----CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTC
T ss_pred CCccEEECCC----CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccc
Confidence 3688888754 12233333 56678899999999998876 44678899999999999987322 12346788999
Q ss_pred cEEEEeecCCC--ceeecccCCCccEEEEeeec-cc--cceEEEeCCCccEEEecccc--ccceeeccCCCCcc----EE
Q 009796 211 EDLSFFYCFGL--KRLRISEAHKLKSLILRFTY-QE--LESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLR----KL 279 (525)
Q Consensus 211 e~L~L~~c~~l--~~l~i~~l~~L~~L~l~~c~-~~--l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~----~L 279 (525)
++|++++|... ....+..+++|+.|++++|. .. +......+++|++|+++++. ...+..+..+++|+ .|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 99999888542 23346678899999999886 22 22222357899999999987 22223455555555 78
Q ss_pred EeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796 280 VLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 280 ~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
+++++.+++. ........+|+.|+++++.
T Consensus 183 ~ls~n~l~~~--~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 183 DLSLNPMNFI--QPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp ECCSSCCCEE--CTTSSCSCCEEEEECCSSC
T ss_pred ecCCCccccc--CccccCCCcccEEECCCCc
Confidence 8888888763 2222334478888888764
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.23 E-value=2.2e-11 Score=118.00 Aligned_cols=164 Identities=24% Similarity=0.237 Sum_probs=120.5
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.+++.|++.. + ....++ .+..+++|++|++++|.+.....+..+++|++|+|++|.++. ++. +..+++|++|
T Consensus 46 ~~L~~L~l~~--~--~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 46 NSIDQIIANN--S--DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL 117 (291)
T ss_dssp HTCCEEECTT--S--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred CcccEEEccC--C--CcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEE
Confidence 5788888764 2 223343 367789999999999998883338889999999999998843 222 7889999999
Q ss_pred EEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796 214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (525)
Q Consensus 214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 291 (525)
++++|.....-.+..+++|+.|++++|. ..+. ....+++|+.|++++|. ...+ .+..+++|+.|++++|.+++ +
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~L~~N~i~~--l 193 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--L 193 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB--C
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCCccccch-hhcCCCccCEEECCCCcCCC--C
Confidence 9999864332335567899999999886 2221 12257889999998888 2222 28888899999998888876 3
Q ss_pred hhhhcCCCCCcEEEecCcc
Q 009796 292 HPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 292 ~~ll~~~~~Le~L~L~~c~ 310 (525)
.. +..+++|+.|+++++.
T Consensus 194 ~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEE
T ss_pred hh-hccCCCCCEEECcCCc
Confidence 33 6788888888888754
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=2.5e-11 Score=117.63 Aligned_cols=146 Identities=16% Similarity=0.164 Sum_probs=112.9
Q ss_pred cCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEE
Q 009796 158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237 (525)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l 237 (525)
..+++|+.|++++|.+...+.+..+++|++|+|++|.+++- .. +..+++|++|++++|.....-.+..+++|+.|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 35789999999999988755678899999999999998432 22 7899999999999986533233667899999999
Q ss_pred eeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796 238 RFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 238 ~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
++|. ..+.. ...+++|+.|++++|.......++.+++|+.|++++|.+++. .. +..+++|+.|+++++.
T Consensus 120 ~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 120 EHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC
T ss_pred CCCcCCCChh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCc
Confidence 9886 22221 125788999999988822225678889999999999988873 22 7788999999998864
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.22 E-value=8e-12 Score=125.09 Aligned_cols=157 Identities=15% Similarity=0.097 Sum_probs=89.8
Q ss_pred CccccCCCCccEEEecCCcCCC-C-----CCCCCCC-cccEEEeceeeech---HHHHHHHhCC-cCccEEEEeecCCCc
Q 009796 154 PQTIFSAKLLTSLKLFGCKLEQ-P-----SHCANLQ-SLKKLSLDEVYVND---QMVQSLVREC-RVLEDLSFFYCFGLK 222 (525)
Q Consensus 154 p~~l~~~~~L~~L~L~~~~l~~-~-----~~~~~l~-~L~~L~L~~~~~~~---~~l~~ll~~c-~~Le~L~L~~c~~l~ 222 (525)
|..+...++|++|+|++|.+.. + ..+..++ +|++|+|++|.+++ ..+..++..+ ++|++|+|++|....
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 3333344568888888887765 2 3445677 78888888887743 3344444444 888888888876321
Q ss_pred eee------cccC-CCccEEEEeeec-cccce--EE--E-e-CCCccEEEecccc-c-----cceeeccCCC-CccEEEe
Q 009796 223 RLR------ISEA-HKLKSLILRFTY-QELES--VE--I-A-VPSLQQLELSFSR-V-----PRLLDVAECP-HLRKLVL 281 (525)
Q Consensus 223 ~l~------i~~l-~~L~~L~l~~c~-~~l~~--~~--~-~-~~~L~~L~l~~~~-~-----~~~~~~~~l~-~L~~L~L 281 (525)
... +..+ ++|+.|++++|. ..... +. + . .++|++|++++|. . .....+..++ +|+.|+|
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 110 2233 677777777775 11111 10 0 1 2477777777766 1 1112233444 6777777
Q ss_pred eCCCCChhh---hhhhhcCC-CCCcEEEecCcc
Q 009796 282 FLPHFNDQE---FHPLISKF-PLLEDLSIISLE 310 (525)
Q Consensus 282 ~~~~~~~~~---~~~ll~~~-~~Le~L~L~~c~ 310 (525)
++|.+++.. +...+..+ ++|++|+|+++.
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 777665532 23344455 377777777654
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.21 E-value=2.3e-11 Score=117.83 Aligned_cols=165 Identities=21% Similarity=0.105 Sum_probs=121.4
Q ss_pred CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
+++++++.. .....+|..+. ++++.|+|++|.+.. +..+..+++|++|+|++|.++.- .. ...+++|++
T Consensus 11 ~l~~l~~~~----~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~ 81 (290)
T 1p9a_G 11 SHLEVNCDK----RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QV-DGTLPVLGT 81 (290)
T ss_dssp TCCEEECTT----SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--EC-CSCCTTCCE
T ss_pred CccEEECCC----CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc--cC-CCCCCcCCE
Confidence 466666543 23446676654 689999999999887 56788899999999999988321 11 268899999
Q ss_pred EEEeecCCCceee--cccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-c-cceeeccCCCCccEEEeeCCCC
Q 009796 213 LSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-V-PRLLDVAECPHLRKLVLFLPHF 286 (525)
Q Consensus 213 L~L~~c~~l~~l~--i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~-~~~~~~~~l~~L~~L~L~~~~~ 286 (525)
|++++|... .++ +.++++|+.|++++|. ..+..- ...+++|++|+++++. . ..+..+..+++|+.|+|++|.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999998642 222 3467899999999986 222211 2257899999999998 2 2334467899999999999998
Q ss_pred ChhhhhhhhcCCCCCcEEEecCcc
Q 009796 287 NDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 287 ~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
+.- ....+.++++|+.|+|+++.
T Consensus 161 ~~l-~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 161 TEL-PAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp SCC-CTTTTTTCTTCCEEECCSSC
T ss_pred Ccc-CHHHhcCcCCCCEEECCCCc
Confidence 852 34567789999999999853
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=2.3e-11 Score=110.62 Aligned_cols=145 Identities=18% Similarity=0.237 Sum_probs=73.0
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.++++|++.. + ....+| .+..+++|++|++++|.+...+.+..+++|++|++++|.++.... ..++.+++|++|
T Consensus 44 ~~L~~L~l~~--n--~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLAN--I--NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEES--S--CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEE
T ss_pred CCccEEeccC--C--CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEE
Confidence 3566666654 1 112344 455566666666666655444455556666666666665532211 124455555555
Q ss_pred EEeecCCCc--eeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhh
Q 009796 214 SFFYCFGLK--RLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE 290 (525)
Q Consensus 214 ~L~~c~~l~--~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~ 290 (525)
++++|.... .-.+.. +++|++|++++|. ......++.+++|+.|+++++.+++-
T Consensus 118 ~Ls~n~i~~~~~~~l~~----------------------l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~- 174 (197)
T 4ezg_A 118 DISHSAHDDSILTKINT----------------------LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY- 174 (197)
T ss_dssp ECCSSBCBGGGHHHHTT----------------------CSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC-
T ss_pred EecCCccCcHhHHHHhh----------------------CCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh-
Confidence 555554322 111223 3444444444443 11112455666666666666666552
Q ss_pred hhhhhcCCCCCcEEEecCc
Q 009796 291 FHPLISKFPLLEDLSIISL 309 (525)
Q Consensus 291 ~~~ll~~~~~Le~L~L~~c 309 (525)
. .+..+++|+.|++++.
T Consensus 175 -~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 175 -R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp -T-TGGGCSSCCEEEECBC
T ss_pred -H-HhccCCCCCEEEeeCc
Confidence 2 3455666666666653
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.20 E-value=1.6e-11 Score=116.30 Aligned_cols=167 Identities=17% Similarity=0.135 Sum_probs=118.0
Q ss_pred CeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 136 VKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 136 l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.+++++.. .....+|..+. ++|+.|+|++|.+.. +..+.++++|++|+|++|.+... ....+..+++|++|
T Consensus 16 ~~~l~~~~----~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 88 (251)
T 3m19_A 16 KKEVDCQG----KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTL 88 (251)
T ss_dssp GTEEECTT----CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred CeEEecCC----CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEE
Confidence 44555432 33456666554 589999999999887 45678899999999999988431 23446788999999
Q ss_pred EEeecCCCce--eecccCCCccEEEEeeec-cccceEE-EeCCCccEEEecccc-ccce-eeccCCCCccEEEeeCCCCC
Q 009796 214 SFFYCFGLKR--LRISEAHKLKSLILRFTY-QELESVE-IAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHFN 287 (525)
Q Consensus 214 ~L~~c~~l~~--l~i~~l~~L~~L~l~~c~-~~l~~~~-~~~~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~L~~~~~~ 287 (525)
++++|..... -.+.++++|+.|++++|. ..+..-. ..+++|+.|+++++. ...+ ..++.+++|+.|+|++|.++
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 9998864321 123467899999998885 2222211 247889999998888 3333 35788889999999988887
Q ss_pred hhhhhhhhcCCCCCcEEEecCcc
Q 009796 288 DQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 288 ~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
+. ....+.++++|+.|+|+++.
T Consensus 169 ~~-~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 169 SV-PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CC-CTTTTTTCTTCCEEECCSCC
T ss_pred cc-CHHHHhCCCCCCEEEeeCCc
Confidence 53 33456788889999988754
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=121.37 Aligned_cols=151 Identities=19% Similarity=0.057 Sum_probs=96.8
Q ss_pred CCCCccEEEecCCcCCC--CCCC--CCCCcccEEEeceeeechH--HHH-HHHhCCcCccEEEEeecCCCcee--ecccC
Q 009796 159 SAKLLTSLKLFGCKLEQ--PSHC--ANLQSLKKLSLDEVYVNDQ--MVQ-SLVRECRVLEDLSFFYCFGLKRL--RISEA 229 (525)
Q Consensus 159 ~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~--~l~-~ll~~c~~Le~L~L~~c~~l~~l--~i~~l 229 (525)
.+++|++|++++|.+.. +..+ ..+++|++|+|++|.++.. .+. .-+..+++|++|++++|...... .+.++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 35679999999998876 4554 8899999999999998431 111 22457999999999998653222 23467
Q ss_pred CCccEEEEeeec-cc---cce-E-EEeCCCccEEEecccc-cccee----eccCCCCccEEEeeCCCCChhhhhhhhcCC
Q 009796 230 HKLKSLILRFTY-QE---LES-V-EIAVPSLQQLELSFSR-VPRLL----DVAECPHLRKLVLFLPHFNDQEFHPLISKF 298 (525)
Q Consensus 230 ~~L~~L~l~~c~-~~---l~~-~-~~~~~~L~~L~l~~~~-~~~~~----~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~ 298 (525)
++|+.|++++|. .. +.. . ...+++|++|++++|. ...+. .++.+++|+.|+|++|.+++.. +..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV-NPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC-CSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc-hhhHHhc
Confidence 888888888875 11 111 1 1246677777777776 21111 2456677777777777776531 2222233
Q ss_pred ---CCCcEEEecCcc
Q 009796 299 ---PLLEDLSIISLE 310 (525)
Q Consensus 299 ---~~Le~L~L~~c~ 310 (525)
++|++|+|+++.
T Consensus 248 ~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 248 MWSSALNSLNLSFAG 262 (310)
T ss_dssp CCCTTCCCEECCSSC
T ss_pred cCcCcCCEEECCCCC
Confidence 577777776653
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=2.7e-11 Score=110.20 Aligned_cols=127 Identities=16% Similarity=0.258 Sum_probs=88.6
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
.++++|++.. + ....+..+..+++|++|++++|.+.. +..+..+++|++|++++|.+++.. ...+..+++|+
T Consensus 66 ~~L~~L~l~~--n---~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~ 139 (197)
T 4ezg_A 66 HNIKDLTINN--I---HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI-LTKINTLPKVN 139 (197)
T ss_dssp TTCSEEEEES--C---CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGG-HHHHTTCSSCC
T ss_pred CCCCEEEccC--C---CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHh-HHHHhhCCCCC
Confidence 5899999987 2 22333467789999999999999986 777889999999999999996543 35578999999
Q ss_pred EEEEeecCCCceee-cccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCCh
Q 009796 212 DLSFFYCFGLKRLR-ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFND 288 (525)
Q Consensus 212 ~L~L~~c~~l~~l~-i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 288 (525)
+|++++|..+..+. +.++++ |++|++++|.......+..+++|+.|+++++.+.+
T Consensus 140 ~L~L~~n~~i~~~~~l~~l~~----------------------L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 140 SIDLSYNGAITDIMPLKTLPE----------------------LKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECCSCTBCCCCGGGGGCSS----------------------CCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred EEEccCCCCccccHhhcCCCC----------------------CCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 99999997444332 333444 44555554441111156677778888887777654
No 96
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.19 E-value=1.2e-10 Score=125.20 Aligned_cols=125 Identities=22% Similarity=0.257 Sum_probs=79.6
Q ss_pred cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
..+++|+|+. .....+|. .+.++++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+.++++|
T Consensus 52 ~~~~~LdLs~----N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTT----SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTC
T ss_pred cCCCEEEeeC----CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCC
Confidence 3677777754 22334443 45667888888888887776 34567788888888888876321 12346677888
Q ss_pred cEEEEeecCC--CceeecccCCCccEEEEeeec-cc--cceEEEeCCCccEEEecccc
Q 009796 211 EDLSFFYCFG--LKRLRISEAHKLKSLILRFTY-QE--LESVEIAVPSLQQLELSFSR 263 (525)
Q Consensus 211 e~L~L~~c~~--l~~l~i~~l~~L~~L~l~~c~-~~--l~~~~~~~~~L~~L~l~~~~ 263 (525)
++|++++|.. +....+.++++|+.|++++|. .. .......+++|++|+++++.
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 8888887743 222335567788888888775 11 11222246778888887775
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.18 E-value=1.1e-11 Score=124.01 Aligned_cols=253 Identities=9% Similarity=0.035 Sum_probs=138.1
Q ss_pred EEEecCCcCCC--CCCCCCCCcccEEEeceeeechH---HHHHHHhCCc-CccEEEEeecCCCce--eeccc-----CCC
Q 009796 165 SLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQ---MVQSLVRECR-VLEDLSFFYCFGLKR--LRISE-----AHK 231 (525)
Q Consensus 165 ~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~c~-~Le~L~L~~c~~l~~--l~i~~-----l~~ 231 (525)
.++++.+.+.+ +......++|++|+|++|.+++. .+...+..++ +|++|+|++|..-.. -.+.. +++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45778888877 44445556699999999998443 3445677888 999999999854221 11222 278
Q ss_pred ccEEEEeeec-cccce--E---EEeC-CCccEEEecccc-cc-ceee----ccC-CCCccEEEeeCCCCChhh---hhhh
Q 009796 232 LKSLILRFTY-QELES--V---EIAV-PSLQQLELSFSR-VP-RLLD----VAE-CPHLRKLVLFLPHFNDQE---FHPL 294 (525)
Q Consensus 232 L~~L~l~~c~-~~l~~--~---~~~~-~~L~~L~l~~~~-~~-~~~~----~~~-l~~L~~L~L~~~~~~~~~---~~~l 294 (525)
|+.|++++|. ..... + .... ++|++|++++|. .. .... +.. .++|+.|+|++|.+++.. +...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999998886 11111 1 0123 788888888887 21 1111 333 358888888888877533 3334
Q ss_pred hcCCC-CCcEEEecCccchh-------HhhhcC-cccceEccccccchhhhcccCCCcceEEEecCCCCccccc-CCCCc
Q 009796 295 ISKFP-LLEDLSIISLETLE-------RIMISS-NRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTN-APCPL 364 (525)
Q Consensus 295 l~~~~-~Le~L~L~~c~~l~-------~~~~~~-~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~-~~~L~ 364 (525)
+...+ +|++|+|++|..-. .....+ ++|+.|+++++. +...... .++..+.. .++|+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~------------~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYA------------ELAYIFSSIPNHVV 228 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHH------------HHHHHHHHSCTTCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHH------------HHHHHHhcCCCCce
Confidence 45555 88888888874211 111112 356666665543 1110000 00001111 24566
Q ss_pred eEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeee-eccccccCCCCCCCcccceEEEEEee
Q 009796 365 NVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFN-IDEFRSCHPSLPLQVESLSLFMESFS 433 (525)
Q Consensus 365 ~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~-lp~~~~~~~~~~~~~~L~~L~L~~~~ 433 (525)
.++++. +.+.......+..++..+++|++|.++.|....... .-..+. . .++.+++|+.|++.+|.
T Consensus 229 ~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~-~-~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 229 SLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG-A-AFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH-T-TSTTCCEEEEECTTSCB
T ss_pred EEECcC-CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH-H-HhccCCceEEEecCCCc
Confidence 666654 333332223334445666777777777665221100 000000 1 34566677777777663
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.16 E-value=4.5e-11 Score=127.26 Aligned_cols=167 Identities=22% Similarity=0.229 Sum_probs=123.1
Q ss_pred HcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (525)
Q Consensus 133 ~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~ 212 (525)
..+|+.|++.. .....+| .+..+++|+.|+|++|.+.....+..+++|+.|+|++|.+.. ++ .+..+++|++
T Consensus 42 L~~L~~L~l~~----n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANN----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTT----CCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCE
T ss_pred CCCCCEEECcC----CCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCE
Confidence 35788887754 1223344 577889999999999998873337889999999999998843 22 3678999999
Q ss_pred EEEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhh
Q 009796 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (525)
Q Consensus 213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 291 (525)
|+|++|.....-.+..+++|+.|+|++|. ..+. ....+++|+.|++++|.......+..+++|+.|+|++|.+++ +
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~--l 190 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--L 190 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCG-GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--C
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCch-hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC--C
Confidence 99999865433335678899999999886 2221 122578999999999882211228889999999999998887 3
Q ss_pred hhhhcCCCCCcEEEecCccc
Q 009796 292 HPLISKFPLLEDLSIISLET 311 (525)
Q Consensus 292 ~~ll~~~~~Le~L~L~~c~~ 311 (525)
..+..+++|+.|+|+++..
T Consensus 191 -~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEE
T ss_pred -hHHccCCCCCEEEccCCcC
Confidence 3467889999999988653
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.16 E-value=2.9e-11 Score=128.78 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=122.5
Q ss_pred cCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEE
Q 009796 158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237 (525)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l 237 (525)
..+++|+.|++++|.+...+.+..+++|+.|+|++|.+..- .. +..+++|+.|+|++|.....-.+..+++|+.|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 45678899999999887755678899999999999988432 12 7889999999999886433224567789999999
Q ss_pred eeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc--hhH
Q 009796 238 RFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LER 314 (525)
Q Consensus 238 ~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~--l~~ 314 (525)
++|. ..+.. ...+++|+.|++++|.......++.+++|+.|+|++|.+++. .. +..+++|+.|+|+++.. +..
T Consensus 117 s~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~i~~l~~ 192 (605)
T 1m9s_A 117 EHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHISDLRA 192 (605)
T ss_dssp TTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred cCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCCCCCChH
Confidence 9886 22221 225789999999998822225688899999999999988874 22 78889999999998743 211
Q ss_pred hhhcCcccceEcccccc
Q 009796 315 IMISSNRLMHLEVYNCS 331 (525)
Q Consensus 315 ~~~~~~~L~~L~l~~c~ 331 (525)
...+++|+.|++++++
T Consensus 193 -l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 193 -LAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GTTCTTCSEEECCSEE
T ss_pred -HccCCCCCEEEccCCc
Confidence 2235788888888753
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.10 E-value=1.2e-10 Score=110.92 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=96.7
Q ss_pred ccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796 157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (525)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 236 (525)
+..+++|++|++++|.+...+.+..+++|++|+|++|.+++- .. +..+++|++|++++|..-.--.+.. ++|+.|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence 345677788888877776633566777888888887777332 12 6777888888887775322111223 6777777
Q ss_pred Eeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796 237 LRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 237 l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
+++|. ..+.. ...+++|+.|+++++.......++.+++|+.|++++|.+++. ..+..+++|+.|+++++.
T Consensus 113 L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 113 LDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred ccCCccCCChh-hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence 77775 22221 124678888888887722123577888888888888888773 456778888888888754
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.04 E-value=2.1e-10 Score=108.48 Aligned_cols=151 Identities=21% Similarity=0.153 Sum_probs=112.1
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le 211 (525)
..++.|++.. + ......+..+..+++|++|+|++|.+.. +..+..+++|++|+|++|.++.- ....+..+++|+
T Consensus 35 ~~l~~L~L~~--n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQS--T-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTT--S-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCC
T ss_pred CCCCEEEccC--C-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCC
Confidence 3688888764 1 1222334456788999999999999887 45578899999999999988421 234567899999
Q ss_pred EEEEeecCCCceee---cccCCCccEEEEeeec-cccceEEE-eCCCccEEEecccc--ccceeeccCCCCccEEEeeCC
Q 009796 212 DLSFFYCFGLKRLR---ISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP 284 (525)
Q Consensus 212 ~L~L~~c~~l~~l~---i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~ 284 (525)
+|+|++|.. ..+. +.++++|+.|++++|. ..+..-.+ .+++|++|+++++. ...+..+..+++|+.|++++|
T Consensus 111 ~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 111 KLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcC-CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 999999854 3332 4567999999999996 22222112 57999999999998 333346888999999999999
Q ss_pred CCChh
Q 009796 285 HFNDQ 289 (525)
Q Consensus 285 ~~~~~ 289 (525)
.++.+
T Consensus 190 ~~~c~ 194 (251)
T 3m19_A 190 QFDCS 194 (251)
T ss_dssp CBCTT
T ss_pred ceeCC
Confidence 88764
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.03 E-value=9.1e-10 Score=109.53 Aligned_cols=215 Identities=13% Similarity=0.095 Sum_probs=123.4
Q ss_pred cccCCccccCCCCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796 150 VNALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-- 225 (525)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-- 225 (525)
...+|..+ .+++++|+|++|.++. + ..+.++++|++|+|++|.+....-...+.++++|.++...++..+..+.
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 34566655 3578888888888877 4 3567888888888888875221112235677787776666665555553
Q ss_pred -cccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc--ccc-eeeccCC-CCccEEEeeCCCCChhhhhhhhcCC
Q 009796 226 -ISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR--VPR-LLDVAEC-PHLRKLVLFLPHFNDQEFHPLISKF 298 (525)
Q Consensus 226 -i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~--~~~-~~~~~~l-~~L~~L~L~~~~~~~~~~~~ll~~~ 298 (525)
+..+++|+.|++++|. ..+... .....++..|++.++. ... ...+..+ ..++.|+++++.++. +.......
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~~ 176 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNG 176 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSSTT
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhccc
Confidence 3467888888888885 222222 1245566777776544 111 1233444 357778888887765 33323344
Q ss_pred CCCcEEEecCccchhHhhh----cCcccceEccccccchhhhccc-CCCcceEEEecCCCC---cccccCCCCceEEEE
Q 009796 299 PLLEDLSIISLETLERIMI----SSNRLMHLEVYNCSGLNRINVD-APNLVSFDFEDNPIP---IVSTNAPCPLNVLFS 369 (525)
Q Consensus 299 ~~Le~L~L~~c~~l~~~~~----~~~~L~~L~l~~c~~L~~l~~~-~p~L~~l~~~g~~~~---~~~~~~~~L~~l~l~ 369 (525)
.+|++|.+.++..++.+.. ..++|+.|++++. +++.+... ..+|+.|+..+...- .++.++++|+.+++.
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 5677777776655544432 2456667776653 24333222 334555554443211 123345666666664
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.02 E-value=1.4e-10 Score=102.38 Aligned_cols=127 Identities=22% Similarity=0.177 Sum_probs=73.8
Q ss_pred CCccEEEecCCcCC--C-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEE
Q 009796 161 KLLTSLKLFGCKLE--Q-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237 (525)
Q Consensus 161 ~~L~~L~L~~~~l~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l 237 (525)
++|++|++++|.+. . +..+..+++|++|++++|.++.. ..+..+++|++|++++|.....
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-------------- 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-------------- 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH--------------
Confidence 56777777777766 2 44456667777777776665321 3344455555555555432111
Q ss_pred eeeccccceEEEeCCCccEEEecccc-ccc--eeeccCCCCccEEEeeCCCCChhhh--hhhhcCCCCCcEEEecCcc
Q 009796 238 RFTYQELESVEIAVPSLQQLELSFSR-VPR--LLDVAECPHLRKLVLFLPHFNDQEF--HPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 238 ~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~l~~L~~L~L~~~~~~~~~~--~~ll~~~~~Le~L~L~~c~ 310 (525)
++.....+++|++|++++|. ... ...+..+++|+.|++++|.+++... ...+..+++|+.|++.+|.
T Consensus 87 ------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 87 ------LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ------CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ------HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 11111135666666666666 221 2466777888888888887765311 2356778888888877754
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=1.3e-10 Score=110.72 Aligned_cols=143 Identities=13% Similarity=0.068 Sum_probs=110.4
Q ss_pred CCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEee
Q 009796 160 AKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRF 239 (525)
Q Consensus 160 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~ 239 (525)
+.+++.++++++.+.....+..+++|++|++++|.++. ++ -+..+++|++|++++|.......+..+++|+.|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence 45677778888877763356779999999999998843 22 3678999999999998643333367789999999999
Q ss_pred ec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796 240 TY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 240 c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~ 310 (525)
|. ..+..+.. ++|+.|++++|.......++.+++|+.|++++|.+++. . .+..+++|+.|+++++.
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSC
T ss_pred CccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCc
Confidence 97 33333332 89999999999822234688999999999999999873 3 47788999999999864
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.97 E-value=3.5e-10 Score=103.60 Aligned_cols=135 Identities=18% Similarity=0.143 Sum_probs=78.9
Q ss_pred cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796 150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-- 225 (525)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-- 225 (525)
...+|..+ .++|++|++++|.+.. +..+..+++|++|++++|.+.. .....+..+++|++|++++|... .+.
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~ 94 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ-SLPNG 94 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCC-ccCHh
Confidence 34555444 3578999999988877 3346788899999998887742 12234567788888888877532 221
Q ss_pred -cccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEE
Q 009796 226 -ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304 (525)
Q Consensus 226 -i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L 304 (525)
+..+++|+.|++++|. +.. ..+..++.+++|+.|+++++.+++. ....+.++++|++|
T Consensus 95 ~~~~l~~L~~L~L~~N~--l~~------------------~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ--LQS------------------LPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYI 153 (208)
T ss_dssp TTTTCTTCCEEECCSSC--CCC------------------CCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEE
T ss_pred HhcCccCCCEEEcCCCc--Ccc------------------cCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEE
Confidence 2344555555555543 111 1111245556666666666655542 22334556666666
Q ss_pred EecCc
Q 009796 305 SIISL 309 (525)
Q Consensus 305 ~L~~c 309 (525)
+++++
T Consensus 154 ~l~~N 158 (208)
T 2o6s_A 154 WLHDN 158 (208)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 66654
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.96 E-value=2.1e-09 Score=113.31 Aligned_cols=151 Identities=14% Similarity=0.018 Sum_probs=102.2
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.+++.|++.. + ....+|..++ ++|++|+|++|.+...+ ..+++|++|+|++|.++. ++. +.. +|++|
T Consensus 59 ~~L~~L~Ls~--n--~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNR--L--NLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCS--S--CCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEE
T ss_pred CCccEEEeCC--C--CCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEE
Confidence 4888888865 2 2234777664 78999999999888722 568899999999998843 333 332 89999
Q ss_pred EEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhh
Q 009796 214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFH 292 (525)
Q Consensus 214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 292 (525)
++++|... .++. .+++|+.|++++|. +..+....++|+.|++++|. ...+. +. ++|+.|+|++|.++. ++
T Consensus 126 ~Ls~N~l~-~lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp 196 (571)
T 3cvr_A 126 DVDNNQLT-MLPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LP 196 (571)
T ss_dssp ECCSSCCS-CCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CC
T ss_pred ECCCCcCC-CCCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hh
Confidence 99888642 2333 56888888888886 22222256788888888887 33433 44 788888888888774 33
Q ss_pred hhhcCCCCC-------cEEEecCc
Q 009796 293 PLISKFPLL-------EDLSIISL 309 (525)
Q Consensus 293 ~ll~~~~~L-------e~L~L~~c 309 (525)
. +.. +| +.|+|+++
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp C-CC----------CCEEEECCSS
T ss_pred h-HHH--hhhcccccceEEecCCC
Confidence 3 222 55 77777764
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.94 E-value=1.4e-10 Score=100.21 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=75.4
Q ss_pred CCCccEEEecCCcCC--C-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796 160 AKLLTSLKLFGCKLE--Q-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (525)
Q Consensus 160 ~~~L~~L~L~~~~l~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~ 236 (525)
.++|+.|++++|.+. . +..+..+++|++|++++|.++.. ..+..+++|++|++++|.....
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~------------- 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG------------- 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-------------
Confidence 367888888888887 3 56667788888888888877432 3355666666666666543211
Q ss_pred EeeeccccceEEEeCCCccEEEecccc-cc--ceeeccCCCCccEEEeeCCCCChhhh--hhhhcCCCCCcEEEec
Q 009796 237 LRFTYQELESVEIAVPSLQQLELSFSR-VP--RLLDVAECPHLRKLVLFLPHFNDQEF--HPLISKFPLLEDLSII 307 (525)
Q Consensus 237 l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~--~~~~~~~l~~L~~L~L~~~~~~~~~~--~~ll~~~~~Le~L~L~ 307 (525)
++.....+++|++|++++|. .. .+..++.+++|+.|++++|.+++... ...+..+++|+.|+++
T Consensus 80 -------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 -------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 11111124556666665555 21 12456677777777777776665311 1356667777777664
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.93 E-value=2.9e-09 Score=105.90 Aligned_cols=208 Identities=11% Similarity=-0.002 Sum_probs=137.1
Q ss_pred cCCeEEEEEeecCCCCcccCCcc-ccCCCCccEEEecCCcCCC---CCCCCCCCcccE-EEeceeeechHHHHHHHhCCc
Q 009796 134 NGVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKK-LSLDEVYVNDQMVQSLVRECR 208 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~-L~L~~~~~~~~~l~~ll~~c~ 208 (525)
.++++|+|+. .....+|.. +.++++|++|+|++|.+.. +..+.++++|+. +.+..+.+.. ..+..+.+++
T Consensus 30 ~~l~~L~Ls~----N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVL----TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEES----CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred CCCCEEEccC----CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence 4789999876 234467764 5678999999999998755 345678888876 4555565521 1133467899
Q ss_pred CccEEEEeecCCCce--eecccCCCccEEEEeeeccccceEEE----e-CCCccEEEecccc-ccceeeccCCCCccEEE
Q 009796 209 VLEDLSFFYCFGLKR--LRISEAHKLKSLILRFTYQELESVEI----A-VPSLQQLELSFSR-VPRLLDVAECPHLRKLV 280 (525)
Q Consensus 209 ~Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~~~l~~~~~----~-~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~ 280 (525)
+|++|++++|..... .......++..|++.++. .+..+.. . ...++.|+++++. ...+......++|+.|.
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred ccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence 999999999864322 222234567788887665 4444432 2 3468889999987 44444445567788898
Q ss_pred eeC-CCCChhhhhhhhcCCCCCcEEEecCccchhHhhh-cCcccceEccccccchhhhc--ccCCCcceEEEe
Q 009796 281 LFL-PHFNDQEFHPLISKFPLLEDLSIISLETLERIMI-SSNRLMHLEVYNCSGLNRIN--VDAPNLVSFDFE 349 (525)
Q Consensus 281 L~~-~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~-~~~~L~~L~l~~c~~L~~l~--~~~p~L~~l~~~ 349 (525)
+.. +.++. .....+.++++|+.|+|+++. ++.+.. .+.+|++|.+.++.+++.+. ...++|+.+.+.
T Consensus 184 l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 184 LSDNNNLEE-LPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CTTCTTCCC-CCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred hccCCcccC-CCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 865 44443 234567888999999999864 444322 25678888888877776654 234666666653
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.92 E-value=1.4e-09 Score=101.21 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=83.6
Q ss_pred CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR- 225 (525)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~- 225 (525)
....+|..+. ++|++|+|++|.+.. +..+.++++|++|+|++|.+..- ....+.++++|++|+|++|.. ..+.
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~l~~ 105 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQL-TVLPS 105 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcC-CccCh
Confidence 3445665443 778888888888776 45567788888888888877321 123356677788888877743 2221
Q ss_pred --cccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCc
Q 009796 226 --ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE 302 (525)
Q Consensus 226 --i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le 302 (525)
+..++ +|+.|+++++. ...+..+..+++|+.|+|++|.++.- ....+..+++|+
T Consensus 106 ~~~~~l~----------------------~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~ 162 (229)
T 3e6j_A 106 AVFDRLV----------------------HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLT 162 (229)
T ss_dssp TTTTTCT----------------------TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred hHhCcch----------------------hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCC
Confidence 22334 44555555444 33344556677777777777776642 234466677777
Q ss_pred EEEecCcc
Q 009796 303 DLSIISLE 310 (525)
Q Consensus 303 ~L~L~~c~ 310 (525)
.|++.+.+
T Consensus 163 ~L~l~~N~ 170 (229)
T 3e6j_A 163 HAYLFGNP 170 (229)
T ss_dssp EEECTTSC
T ss_pred EEEeeCCC
Confidence 77777643
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.91 E-value=1.2e-09 Score=101.07 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=73.3
Q ss_pred cCCccccCCCCccEEEecCCcCCC-C--CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--ec
Q 009796 152 ALPQTIFSAKLLTSLKLFGCKLEQ-P--SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RI 226 (525)
Q Consensus 152 ~lp~~l~~~~~L~~L~L~~~~l~~-~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--~i 226 (525)
.+|..+. ..+++|+|++|.+.. + ..+..+++|++|+|++|.++.- ....+.++++|++|+|++|...... .+
T Consensus 25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 101 (220)
T 2v70_A 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENVQHKMF 101 (220)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGGG
T ss_pred cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCccCHhHh
Confidence 4554432 345666777666655 1 2245666666666666665221 1123455566666666655431111 12
Q ss_pred ccCCCccEEEEeeeccccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEE
Q 009796 227 SEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304 (525)
Q Consensus 227 ~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L 304 (525)
. .+++|++|+++++. ...+..+..+++|+.|+|++|.+++. .+..+..+++|+.|
T Consensus 102 ~----------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L 158 (220)
T 2v70_A 102 K----------------------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTL 158 (220)
T ss_dssp T----------------------TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEE
T ss_pred c----------------------CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEE
Confidence 2 34556666666655 22234566777777777777777653 24456667777777
Q ss_pred EecCcc
Q 009796 305 SIISLE 310 (525)
Q Consensus 305 ~L~~c~ 310 (525)
+|+++.
T Consensus 159 ~L~~N~ 164 (220)
T 2v70_A 159 NLLANP 164 (220)
T ss_dssp ECCSCC
T ss_pred EecCcC
Confidence 777643
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.90 E-value=4.9e-09 Score=110.45 Aligned_cols=175 Identities=15% Similarity=0.063 Sum_probs=117.6
Q ss_pred CCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEee
Q 009796 161 KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRF 239 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~ 239 (525)
.+|+.|+|++|.+.. |..+ +++|++|+|++|.++. ++ ..+++|++|++++|... .++.- ..+|+.|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~-~ip~l-~~~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLS-TLPEL-PASLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS-CCCCC-CTTCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCC-Ccchh-hcCCCEEECCC
Confidence 489999999999887 4433 4899999999999852 33 56899999999998542 23321 13899999999
Q ss_pred ec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhh
Q 009796 240 TY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMI 317 (525)
Q Consensus 240 c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~ 317 (525)
|. ..++. .+++|+.|++++|. ...+. .+++|+.|+|++|.+++ ++. +. ++|+.|+|+++. ++.+..
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~~lp~ 197 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LESLPA 197 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSSCCC
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CCchhh
Confidence 86 33443 67899999999988 33332 57889999999998877 344 33 889999998853 222111
Q ss_pred cCcccceEccccccchhhhcccCCCcceEEEecCCC---CcccccCCCCceEEEEe
Q 009796 318 SSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI---PIVSTNAPCPLNVLFSN 370 (525)
Q Consensus 318 ~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~---~~~~~~~~~L~~l~l~~ 370 (525)
-..+| ....+.|+.|.++++.+ |..+..+++|+.++++.
T Consensus 198 ~~~~L--------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 198 VPVRN--------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp CC----------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred HHHhh--------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 00112 11122335566655544 34455688899998874
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=7.4e-10 Score=97.69 Aligned_cols=105 Identities=23% Similarity=0.100 Sum_probs=77.0
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.++++|++.. +......+|..+..+++|++|++++|.+.....+..+++|++|+|++|.+... ++..+.++++|++|
T Consensus 24 ~~L~~L~l~~--n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDN--CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCS--CBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEECCC--CCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 4799999876 32222478888888999999999999988766778899999999999998542 56677789999999
Q ss_pred EEeecCCCce---eecccCCCccEEEEeeec
Q 009796 214 SFFYCFGLKR---LRISEAHKLKSLILRFTY 241 (525)
Q Consensus 214 ~L~~c~~l~~---l~i~~l~~L~~L~l~~c~ 241 (525)
++++|..... ..+..+++|+.|++++|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 9999854221 123344555555555443
No 113
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.86 E-value=1.1e-09 Score=76.21 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=33.6
Q ss_pred CCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhh
Q 009796 5 VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ 44 (525)
Q Consensus 5 ~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw 44 (525)
.+.+.++.||+||+.+||+|||.+|+++++.|||+|+.+.
T Consensus 4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp -----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999999999763
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.85 E-value=1.8e-09 Score=98.78 Aligned_cols=140 Identities=15% Similarity=0.114 Sum_probs=91.6
Q ss_pred cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccEEEEee
Q 009796 164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSLILRF 239 (525)
Q Consensus 164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~L~l~~ 239 (525)
+.++.+++.+.. |.. -.++|++|+++++.++. .....+..+++|++|++++|.. ..+. +..
T Consensus 10 ~~v~c~~~~l~~~p~~--~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~----------- 74 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG--IPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNK----------- 74 (208)
T ss_dssp TEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTT-----------
T ss_pred CEEEecCCCccCCCCC--CCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCcc-CccChhhcCC-----------
Confidence 466677766655 322 25689999999998742 1233456788888888887743 2221 122
Q ss_pred eccccceEEEeCCCccEEEecccc-cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccch--h-H
Q 009796 240 TYQELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL--E-R 314 (525)
Q Consensus 240 c~~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l--~-~ 314 (525)
+++|++|+++++. .. .+..++.+++|+.|+++++.+++. ....+.++++|++|+++++... . .
T Consensus 75 -----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 75 -----------LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL-PDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred -----------CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCccc-CHhHhccCCcCCEEECCCCccceeCHH
Confidence 3455555555555 21 222467899999999999988863 3445788999999999987431 1 1
Q ss_pred hhhcCcccceEccccc
Q 009796 315 IMISSNRLMHLEVYNC 330 (525)
Q Consensus 315 ~~~~~~~L~~L~l~~c 330 (525)
.....++|+.|++.+.
T Consensus 143 ~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTTCTTCCEEECCSC
T ss_pred HhccCCCccEEEecCC
Confidence 1223578999999884
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.82 E-value=4.6e-09 Score=97.72 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=94.7
Q ss_pred ccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec
Q 009796 163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY 241 (525)
Q Consensus 163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~ 241 (525)
-+.++.+++.+.. |... .++|++|+|++|.+..- ....+.++++|++|+|++|.. ..+....
T Consensus 21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~------------- 83 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGV------------- 83 (229)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTT-------------
T ss_pred CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhh-------------
Confidence 5678888887776 4433 38999999999988431 234467788888888888753 2222110
Q ss_pred cccceEEEeCCCccEEEecccc-cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHh----
Q 009796 242 QELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI---- 315 (525)
Q Consensus 242 ~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~---- 315 (525)
...+++|+.|+++++. .. .+..++.+++|+.|+|++|.++. ++..+.++++|+.|+|+++.. ..+
T Consensus 84 ------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l-~~~~~~~ 154 (229)
T 3e6j_A 84 ------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQL-KSIPHGA 154 (229)
T ss_dssp ------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCC-CCCCTTT
T ss_pred ------cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcC-CccCHHH
Confidence 0123455555555555 21 22346889999999999999984 555668999999999998642 222
Q ss_pred hhcCcccceEcccc
Q 009796 316 MISSNRLMHLEVYN 329 (525)
Q Consensus 316 ~~~~~~L~~L~l~~ 329 (525)
....++|+.|++.+
T Consensus 155 ~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 155 FDRLSSLTHAYLFG 168 (229)
T ss_dssp TTTCTTCCEEECTT
T ss_pred HhCCCCCCEEEeeC
Confidence 22357888888876
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.82 E-value=1.9e-09 Score=93.05 Aligned_cols=105 Identities=23% Similarity=0.180 Sum_probs=77.3
Q ss_pred cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L 213 (525)
.++++|++.. +......+|..+..+++|++|++++|.+.....+..+++|++|+|++|.+... ++..+..+++|++|
T Consensus 17 ~~l~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDN--SRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTT--CBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred ccCeEEEccC--CcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence 4688888765 22222467887788999999999999888766678899999999999998542 66777889999999
Q ss_pred EEeecCCCce---eecccCCCccEEEEeeec
Q 009796 214 SFFYCFGLKR---LRISEAHKLKSLILRFTY 241 (525)
Q Consensus 214 ~L~~c~~l~~---l~i~~l~~L~~L~l~~c~ 241 (525)
++++|..... ..+..+++|+.|++++|.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 9999864221 123345555555555554
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.82 E-value=4e-09 Score=97.52 Aligned_cols=135 Identities=15% Similarity=0.214 Sum_probs=83.3
Q ss_pred CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR- 225 (525)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~- 225 (525)
....+|..+. ++|+.|+|++|.+.. +..+..+++|++|+|++|.+..- .+..+.++++|++|+|++|... .+.
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~ 97 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKIT-ELPK 97 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCC-ccCH
Confidence 3445665543 678888888888776 34667788888888888877321 1233566777777777776432 211
Q ss_pred --cccCCCccEEEEeeeccccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCC
Q 009796 226 --ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLL 301 (525)
Q Consensus 226 --i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~L 301 (525)
+.+ +++|+.|+++++. ...+..+..+++|+.|+|++|.++.. ....+..+++|
T Consensus 98 ~~f~~----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L 154 (220)
T 2v9t_B 98 SLFEG----------------------LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAI 154 (220)
T ss_dssp TTTTT----------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTC
T ss_pred hHccC----------------------CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCC
Confidence 123 3455555555554 22233566777777777777777653 23345667777
Q ss_pred cEEEecCcc
Q 009796 302 EDLSIISLE 310 (525)
Q Consensus 302 e~L~L~~c~ 310 (525)
+.|+|++.+
T Consensus 155 ~~L~L~~N~ 163 (220)
T 2v9t_B 155 QTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 777777643
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.79 E-value=5.5e-09 Score=96.56 Aligned_cols=139 Identities=12% Similarity=0.057 Sum_probs=91.7
Q ss_pred cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee---ecccCCCccEEEEee
Q 009796 164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL---RISEAHKLKSLILRF 239 (525)
Q Consensus 164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l---~i~~l~~L~~L~l~~ 239 (525)
+.++++++.+.. |... .++|+.|+|++|.+..- ....+..+++|++|+|++|.. ..+ .+.+
T Consensus 14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~----------- 78 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQI-SELAPDAFQG----------- 78 (220)
T ss_dssp TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCC-CEECTTTTTT-----------
T ss_pred CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcC-CCcCHHHhhC-----------
Confidence 577888887776 4333 26899999998887321 122356677788888877653 222 1222
Q ss_pred eccccceEEEeCCCccEEEecccc-ccc-eeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccch--h-H
Q 009796 240 TYQELESVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL--E-R 314 (525)
Q Consensus 240 c~~~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l--~-~ 314 (525)
+++|++|+++++. ... +..+..+++|+.|+|++|.+++. ....+.++++|+.|+|+++..- . .
T Consensus 79 -----------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 79 -----------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp -----------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred -----------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe-CHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 4556666666665 222 23468899999999999999874 3456788999999999987531 1 1
Q ss_pred hhhcCcccceEcccc
Q 009796 315 IMISSNRLMHLEVYN 329 (525)
Q Consensus 315 ~~~~~~~L~~L~l~~ 329 (525)
.....++|+.|++.+
T Consensus 147 ~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TTTTCTTCCEEECCS
T ss_pred HHhCCCCCCEEEeCC
Confidence 122356788888877
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.75 E-value=9.8e-09 Score=94.85 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=89.1
Q ss_pred cCCeEEEEEeecCCCCcccC-C-ccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796 134 NGVKELDFEVITDKNSVNAL-P-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~l-p-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~ 209 (525)
..+++|+++. +. ...+ | ..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+.++++
T Consensus 32 ~~~~~L~L~~--N~--l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNN--NE--FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLES 106 (220)
T ss_dssp TTCSEEECCS--SC--CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSS
T ss_pred CCCCEEEcCC--Cc--CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcC
Confidence 3577888765 22 2233 2 335678999999999999987 44788999999999999998421 2344678999
Q ss_pred ccEEEEeecCCCce--eecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCC
Q 009796 210 LEDLSFFYCFGLKR--LRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH 285 (525)
Q Consensus 210 Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~ 285 (525)
|++|+|++|..... -.+.+ +++|+.|+++++. ...+..+..+++|+.|++++|.
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIG----------------------LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTT----------------------CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCcCCeECHhHcCC----------------------CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999999864221 11223 3555555565555 2224567788889999998887
Q ss_pred CCh
Q 009796 286 FND 288 (525)
Q Consensus 286 ~~~ 288 (525)
++.
T Consensus 165 l~c 167 (220)
T 2v70_A 165 FNC 167 (220)
T ss_dssp EEC
T ss_pred CcC
Confidence 764
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.75 E-value=6.4e-09 Score=103.85 Aligned_cols=153 Identities=20% Similarity=0.161 Sum_probs=100.4
Q ss_pred cccCCccccCCCCccEEEecCCcCCC--CCCCC-CCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796 150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCA-NLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR- 225 (525)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~- 225 (525)
...+|..+. +.++.|+|++|.+.. +..+. ++++|++|+|++|.++.- ....+.++++|++|+|++|.. ..+.
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l-~~~~~ 105 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHL-HTLDE 105 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC-CEECT
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcC-CcCCH
Confidence 445666543 458899999998887 33444 899999999999987321 123467889999999998864 3332
Q ss_pred --cccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc-ccceee-c---cCCCCccEEEeeCCCCChhhhhhh
Q 009796 226 --ISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR-VPRLLD-V---AECPHLRKLVLFLPHFNDQEFHPL 294 (525)
Q Consensus 226 --i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~-~---~~l~~L~~L~L~~~~~~~~~~~~l 294 (525)
+.++++|+.|++++|. +..+. ..+++|+.|+++++. ...+.. + ..+++|+.|+|++|.++.- ....
T Consensus 106 ~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~ 182 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTD 182 (361)
T ss_dssp TTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC-CHHH
T ss_pred HHhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc-CHHH
Confidence 4467888888888875 33321 246788888888877 333322 2 5678888888888877752 2233
Q ss_pred hcCCCC--CcEEEecCc
Q 009796 295 ISKFPL--LEDLSIISL 309 (525)
Q Consensus 295 l~~~~~--Le~L~L~~c 309 (525)
+..++. |+.|+|.+.
T Consensus 183 ~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHHSCHHHHTTEECCSS
T ss_pred hhhccHhhcceEEecCC
Confidence 445555 366777764
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.74 E-value=2.2e-09 Score=95.46 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=80.0
Q ss_pred ccCCCCccEEEecCCcCCCCCCCCC-CCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEE
Q 009796 157 IFSAKLLTSLKLFGCKLEQPSHCAN-LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL 235 (525)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~-l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L 235 (525)
+..+.+|+.|++++|.+...+.+.. .++|++|+|++|.++. + ..+..+++|++|++++|.. ..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l-~~~~~--------- 81 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRI-CRIGE--------- 81 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCC-CEECS---------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcc-cccCc---------
Confidence 3457788888888887776222333 3478888888777642 1 2345566666666666542 11110
Q ss_pred EEeeeccccceEEEeCCCccEEEecccc-cccee--eccCCCCccEEEeeCCCCChhh--hhhhhcCCCCCcEEEecCcc
Q 009796 236 ILRFTYQELESVEIAVPSLQQLELSFSR-VPRLL--DVAECPHLRKLVLFLPHFNDQE--FHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 236 ~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~l~~L~~L~L~~~~~~~~~--~~~ll~~~~~Le~L~L~~c~ 310 (525)
.+...+++|++|++++|. ...+. .++.+++|+.|++++|.++... ....+..+++|+.|+++.+.
T Consensus 82 ----------~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 82 ----------GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ----------CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ----------chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 001135566666666665 22232 5677888888888888776421 11247788899999888765
Q ss_pred c
Q 009796 311 T 311 (525)
Q Consensus 311 ~ 311 (525)
.
T Consensus 152 ~ 152 (176)
T 1a9n_A 152 L 152 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.72 E-value=2.9e-09 Score=94.66 Aligned_cols=130 Identities=13% Similarity=0.055 Sum_probs=82.6
Q ss_pred CCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEE
Q 009796 178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQL 257 (525)
Q Consensus 178 ~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L 257 (525)
.+.++++|+.|++++|.++. ++.+...+++|++|++++|....--.+ ..+++|++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l----------------------~~l~~L~~L 69 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGF----------------------PLLRRLKTL 69 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCC----------------------CCCSSCCEE
T ss_pred hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCccccc----------------------ccCCCCCEE
Confidence 34556777788887777642 223333344666666666542110011 135677777
Q ss_pred Eecccc-cccee-eccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccch--hH----hhhcCcccceEcccc
Q 009796 258 ELSFSR-VPRLL-DVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL--ER----IMISSNRLMHLEVYN 329 (525)
Q Consensus 258 ~l~~~~-~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l--~~----~~~~~~~L~~L~l~~ 329 (525)
++++|. ...+. .++.+++|+.|++++|.++.-.....+..+++|+.|+++++... .. +...+++|+.|+++.
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 777776 32332 34889999999999999976221236788999999999997632 11 233468899999887
Q ss_pred cc
Q 009796 330 CS 331 (525)
Q Consensus 330 c~ 331 (525)
+.
T Consensus 150 n~ 151 (176)
T 1a9n_A 150 VK 151 (176)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.68 E-value=6.5e-10 Score=101.03 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=83.3
Q ss_pred cccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccC
Q 009796 150 VNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEA 229 (525)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l 229 (525)
...+|..+..+++|++|++++|.+...+.+.++++|++|++++|.+. .++..+..+++|++|++++|....--.+..+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l 114 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKL 114 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence 34455567778888888888887776236677788888888888774 2444555667788888877743221122334
Q ss_pred CCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChh---------hhhhhhcCCCC
Q 009796 230 HKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQ---------EFHPLISKFPL 300 (525)
Q Consensus 230 ~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~---------~~~~ll~~~~~ 300 (525)
++|+.|++++|. +..+ +....+..+++|+.|++++|.+++. .....+..+++
T Consensus 115 ~~L~~L~l~~N~--i~~~-----------------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 175 (198)
T 1ds9_A 115 VNLRVLYMSNNK--ITNW-----------------GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175 (198)
T ss_dssp HHSSEEEESEEE--CCCH-----------------HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred CCCCEEECCCCc--CCch-----------------hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence 555555555553 1000 0112456677777777777766443 12234677888
Q ss_pred CcEEEe
Q 009796 301 LEDLSI 306 (525)
Q Consensus 301 Le~L~L 306 (525)
|+.|+-
T Consensus 176 L~~Ld~ 181 (198)
T 1ds9_A 176 LKKLDG 181 (198)
T ss_dssp CSEECC
T ss_pred cEEECC
Confidence 888873
No 124
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=3.8e-09 Score=105.73 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=33.5
Q ss_pred CCCccEEEecccc-c-----cceeeccCCCCccEEEeeCCCCChhhh---hhhhcCCCCCcEEEecCcc
Q 009796 251 VPSLQQLELSFSR-V-----PRLLDVAECPHLRKLVLFLPHFNDQEF---HPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 251 ~~~L~~L~l~~~~-~-----~~~~~~~~l~~L~~L~L~~~~~~~~~~---~~ll~~~~~Le~L~L~~c~ 310 (525)
.++|++|++++|. . .....+...++|+.|+|++|.+++... ...+...++|++|+|+++.
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 4556666665555 1 112234555667777777777766432 2334455667777776654
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.63 E-value=9.4e-10 Score=116.32 Aligned_cols=186 Identities=16% Similarity=0.107 Sum_probs=121.8
Q ss_pred cCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeee------------chHHHHHHHhCCcCccEEE-EeecCC--C
Q 009796 158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV------------NDQMVQSLVRECRVLEDLS-FFYCFG--L 221 (525)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~------------~~~~l~~ll~~c~~Le~L~-L~~c~~--l 221 (525)
..+++|+.|+|++|.+.. |..+++|++|+.|+++++.. ....++..++.+++|+.|+ ++.+.. +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 467899999999998877 78888899999999876641 1123445667777888877 443311 1
Q ss_pred cee-----eccc--CCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhh
Q 009796 222 KRL-----RISE--AHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFH 292 (525)
Q Consensus 222 ~~l-----~i~~--l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 292 (525)
..+ .+.. ...|+.|++++|. ..++. ...+++|+.|++++|. ...|..++.+++|+.|+|++|.+++ ++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence 110 0111 1367888888876 33433 2357788888888887 5556678888888888888888876 44
Q ss_pred hhhcCCCCCcEEEecCccc--h--hHhhhcCcccceEcccccc------chhhhcccCCCcceEE
Q 009796 293 PLISKFPLLEDLSIISLET--L--ERIMISSNRLMHLEVYNCS------GLNRINVDAPNLVSFD 347 (525)
Q Consensus 293 ~ll~~~~~Le~L~L~~c~~--l--~~~~~~~~~L~~L~l~~c~------~L~~l~~~~p~L~~l~ 347 (525)
.+.++++|+.|+|+++.. + ......+++|+.|++++.+ ....+....|+|+.|+
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 567888888888887643 2 1222235778888887743 1122223467777764
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.60 E-value=1.3e-08 Score=101.54 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=108.4
Q ss_pred cCCeEEEEEeecCCCCcccCCcccc--CCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796 134 NGVKELDFEVITDKNSVNALPQTIF--SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~ 209 (525)
..++.|+|+. .....++...+ .+++|++|+|++|.+.. +..+.++++|++|+|++|.+..- ....+.++++
T Consensus 39 ~~l~~L~Ls~----N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSH----NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCS----SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred CCCCEEECCC----CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcC
Confidence 3578888765 22334544443 78999999999999987 45688999999999999988421 2334678999
Q ss_pred ccEEEEeecCCCce--eecccCCCccEEEEeeec-cccceEE----EeCCCccEEEecccc-ccc-eeeccCCCC--ccE
Q 009796 210 LEDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QELESVE----IAVPSLQQLELSFSR-VPR-LLDVAECPH--LRK 278 (525)
Q Consensus 210 Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~-~~l~~~~----~~~~~L~~L~l~~~~-~~~-~~~~~~l~~--L~~ 278 (525)
|++|+|++|..... -.+.++++|+.|++++|. ..+..-. ..+++|+.|+++++. ... ...+..++. ++.
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTT
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcce
Confidence 99999999875322 235578999999999996 3322211 358999999999998 222 235666776 488
Q ss_pred EEeeCCCCCh
Q 009796 279 LVLFLPHFND 288 (525)
Q Consensus 279 L~L~~~~~~~ 288 (525)
|+|.+|.+.-
T Consensus 194 l~l~~N~~~C 203 (361)
T 2xot_A 194 LYLHNNPLEC 203 (361)
T ss_dssp EECCSSCEEC
T ss_pred EEecCCCccC
Confidence 9999988764
No 127
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.55 E-value=7.8e-08 Score=84.28 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=70.7
Q ss_pred ccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceee-echHHHHHHHhC---CcCccEEEEeecCCCcee
Q 009796 151 NALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRE---CRVLEDLSFFYCFGLKRL 224 (525)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~---c~~Le~L~L~~c~~l~~l 224 (525)
..+|......-.|++|++++|.++. ...+.+|++|++|+|++|. +++..+..+... |++|++|+|++|..++.-
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 4566544445679999999998776 4455789999999999996 588888887653 789999999999887653
Q ss_pred e---cccCCCccEEEEeeec
Q 009796 225 R---ISEAHKLKSLILRFTY 241 (525)
Q Consensus 225 ~---i~~l~~L~~L~l~~c~ 241 (525)
. +..+++|++|++++|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 2 3457888888888776
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.52 E-value=4.9e-08 Score=88.05 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=31.3
Q ss_pred ccCCccccCCCCccEEEecCCcCCC-CC--CCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeec
Q 009796 151 NALPQTIFSAKLLTSLKLFGCKLEQ-PS--HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYC 218 (525)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c 218 (525)
..+|..+.. +|++|++++|.+.. +. .+..+++|++|+|++|.++.- .+..+.++++|++|+|++|
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCC
Confidence 344443332 56666666665554 22 245566666666666555211 1222344455555555444
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.47 E-value=2.3e-08 Score=90.64 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=67.4
Q ss_pred CCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEE
Q 009796 178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQL 257 (525)
Q Consensus 178 ~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L 257 (525)
.+..+++|++|+|++|.+.. ++ .+..+++|++|++++|.. ..++.....+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l---------------------~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI---------------------KKIENLDAVADTLEEL 98 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE---------------------CSCSSHHHHHHHCSEE
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc---------------------ccccchhhcCCcCCEE
Confidence 45566677777777776632 22 344556666666666532 1111111123556666
Q ss_pred Eecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc
Q 009796 258 ELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (525)
Q Consensus 258 ~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~ 311 (525)
++++|. ...+ .++.+++|+.|+++++.+++-.....+..+++|++|+++++..
T Consensus 99 ~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 99 WISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 666555 2222 5677889999999999988732334678899999999998753
No 130
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.45 E-value=4.7e-07 Score=89.81 Aligned_cols=204 Identities=18% Similarity=0.143 Sum_probs=107.1
Q ss_pred HHHHHHHHHhhccccCCcccceEEEEEeeccccCCchhHHHHHHHH-HHcCCeEEEEEeecCCC------CcccCCcccc
Q 009796 86 KFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELA-MENGVKELDFEVITDKN------SVNALPQTIF 158 (525)
Q Consensus 86 ~~~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~-~~~~l~~L~l~~~~~~~------~~~~lp~~l~ 158 (525)
.+.+.+.++|.. .....|+.+.+..-..+.......+..++..+ ..++|+.|.+....... ....+...+.
T Consensus 92 ~~~~~~~~fl~~--~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~ 169 (362)
T 2ra8_A 92 EGVNLMDKILKD--KKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD 169 (362)
T ss_dssp TTCCHHHHHHHC--TTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred cHHHHHHHHhcC--CCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence 344555566621 22345777776632211001112333443322 23589999875411000 0113444455
Q ss_pred CCCCccEEEecCCc-CCCCCCCCCCCcccEEEeceeeechHHHHHHHh-CCcCccEEEEeecCC-------Ccee----e
Q 009796 159 SAKLLTSLKLFGCK-LEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVR-ECRVLEDLSFFYCFG-------LKRL----R 225 (525)
Q Consensus 159 ~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~-~c~~Le~L~L~~c~~-------l~~l----~ 225 (525)
.+++|+.|.|++|. +..+. ..+++|++|+|..+.++...+..+.. .+|+|++|+|..+.. +..+ .
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred cCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 67899999998873 32222 24889999999988887766766653 689999999864211 1110 1
Q ss_pred cccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhh---cCCCCCc
Q 009796 226 ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLI---SKFPLLE 302 (525)
Q Consensus 226 i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll---~~~~~Le 302 (525)
...+|+|+.|++.+|. +.... .......+.+++|+.|+|+.+.+++.....+. .++++|+
T Consensus 248 ~~~~p~Lr~L~L~~~~--i~~~~---------------~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAE--EQNVV---------------VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp TTTCTTCCEEEEESCT--THHHH---------------HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred cCCCCCcCEEeCCCCC--CchHH---------------HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 1124455555554443 00000 00000113456777777777777665433332 4467777
Q ss_pred EEEecCcc
Q 009796 303 DLSIISLE 310 (525)
Q Consensus 303 ~L~L~~c~ 310 (525)
.|+|+.|.
T Consensus 311 ~L~L~~n~ 318 (362)
T 2ra8_A 311 FINMKYNY 318 (362)
T ss_dssp EEECCSBB
T ss_pred EEECCCCc
Confidence 77777664
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=1.6e-07 Score=99.20 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=59.5
Q ss_pred cccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--ecccCCCccEEEEeeec-cccceEEEeCCCccEEEec
Q 009796 184 SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS 260 (525)
Q Consensus 184 ~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~ 260 (525)
.|+.|+|++|.++. ++. +..+++|++|+|++|... .+ .+.++++|+.|++++|. ..++ ....+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 46667777766632 333 566667777777666432 22 23344555555555553 1222 01134555555555
Q ss_pred ccc-ccc--eeeccCCCCccEEEeeCCCCChh--hhhhhhcCCCCCcEEE
Q 009796 261 FSR-VPR--LLDVAECPHLRKLVLFLPHFNDQ--EFHPLISKFPLLEDLS 305 (525)
Q Consensus 261 ~~~-~~~--~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~~~~Le~L~ 305 (525)
+|. ... +..++.+++|+.|+|++|.+++. ....+...+|+|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 555 222 44556666666666666655542 1223334455565554
No 132
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=2.8e-07 Score=91.46 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=82.4
Q ss_pred HHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec---cccceEE-EeCCCccEEEecccc----cc--c--
Q 009796 199 MVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY---QELESVE-IAVPSLQQLELSFSR----VP--R-- 266 (525)
Q Consensus 199 ~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~---~~l~~~~-~~~~~L~~L~l~~~~----~~--~-- 266 (525)
.+..++..+|+|++|.|.+|.++.-..+. +++|++|++..|. ..+..+. ..+|+|++|+++.+. .. .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 46788899999999999988543322233 6899999998775 1122222 258999999986321 00 0
Q ss_pred ---eeeccCCCCccEEEeeCCCCChhhhhhhh--cCCCCCcEEEecCccchhHh-----h---hcCcccceEccccc
Q 009796 267 ---LLDVAECPHLRKLVLFLPHFNDQEFHPLI--SKFPLLEDLSIISLETLERI-----M---ISSNRLMHLEVYNC 330 (525)
Q Consensus 267 ---~~~~~~l~~L~~L~L~~~~~~~~~~~~ll--~~~~~Le~L~L~~c~~l~~~-----~---~~~~~L~~L~l~~c 330 (525)
....+.+|+|+.|.|..+.+++.....+. ..+|+|++|+|+.+. ++.. . ..+++|+.|+++.|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 11123578999999988888765333333 357889999997653 3331 1 12355666666554
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.38 E-value=2.8e-07 Score=83.11 Aligned_cols=121 Identities=17% Similarity=0.082 Sum_probs=57.7
Q ss_pred cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--eecccCCCccEEEEeee
Q 009796 164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LRISEAHKLKSLILRFT 240 (525)
Q Consensus 164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c 240 (525)
+.++++++.+.. |... .++|++|+|++|.++. ++..+.++++|++|+|++|..... -.+.++++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 455555555554 3222 2456666666665531 223345566666666665542111 11223344444444433
Q ss_pred ccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796 241 YQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL 309 (525)
Q Consensus 241 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c 309 (525)
. +. ...+..+..+++|+.|+|++|.++.- ....+..+++|+.|++++.
T Consensus 89 ~--l~------------------~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 R--LR------------------CIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp C--CC------------------BCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSS
T ss_pred c--cC------------------EeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCC
Confidence 2 11 11122355566666666666665542 2234555666666666653
No 134
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=2e-08 Score=100.50 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=105.7
Q ss_pred HHHHcCCeEEEEEeecCCCCc---ccCCcccc-CCCCccEEEecCCcCCC---CCCCCCCCcccEEEeceeeechHHHHH
Q 009796 130 LAMENGVKELDFEVITDKNSV---NALPQTIF-SAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQS 202 (525)
Q Consensus 130 ~~~~~~l~~L~l~~~~~~~~~---~~lp~~l~-~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ 202 (525)
..+...++.|++.. +.... ..+...+. .+++|++|+|++|.+.. ......+++|++|+|++|.+++.....
T Consensus 68 ~~~~~~L~~L~Ls~--n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 68 AEVLSSLRQLNLAG--VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HHHHTTCCEEECTT--SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HHHHhhCCEEEecC--CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 34456788888765 21111 11222222 23689999999998865 233345778999999999886555444
Q ss_pred H---H-hCCcCccEEEEeecCCCc----ee--ecccCCCccEEEEeeec---cccceE---EEeCCCccEEEecccc-c-
Q 009796 203 L---V-RECRVLEDLSFFYCFGLK----RL--RISEAHKLKSLILRFTY---QELESV---EIAVPSLQQLELSFSR-V- 264 (525)
Q Consensus 203 l---l-~~c~~Le~L~L~~c~~l~----~l--~i~~l~~L~~L~l~~c~---~~l~~~---~~~~~~L~~L~l~~~~-~- 264 (525)
+ + ..++.|++|+|++|..-. .+ .+..+++|++|++++|. .+...+ ....++|++|++++|. .
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 3 3 357889999999986421 11 12346889999999886 111111 1246789999999998 1
Q ss_pred ----cceeeccCCCCccEEEeeCCCCChhhhhhh
Q 009796 265 ----PRLLDVAECPHLRKLVLFLPHFNDQEFHPL 294 (525)
Q Consensus 265 ----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l 294 (525)
.....+...++|+.|+|++|.+++.....+
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 122335567999999999999998755543
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.35 E-value=1.5e-07 Score=102.57 Aligned_cols=109 Identities=11% Similarity=0.007 Sum_probs=55.2
Q ss_pred ccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEE
Q 009796 157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL 235 (525)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L 235 (525)
+..+++|+.|+|++|.+.. +.....+++|++|+|++|.++ .++..+.++++|++|+|++|... .
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~------------ 284 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-S------------ 284 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-S------------
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-c------------
Confidence 3344555555555554444 333344555555555555443 12223344445555555444321 1
Q ss_pred EEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCCh
Q 009796 236 ILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND 288 (525)
Q Consensus 236 ~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~ 288 (525)
++.....+++|++|++++|. ...+..++.+++|+.|+|++|.+++
T Consensus 285 --------lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 285 --------LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp --------CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred --------cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 11111235666666666665 4445557777777777777777765
No 136
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=5.6e-07 Score=78.85 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=36.1
Q ss_pred ccCCCCccEEEeeCCC-CChhhhhhhhcC---CCCCcEEEecCccchhHhhh----cCcccceEccccccch
Q 009796 270 VAECPHLRKLVLFLPH-FNDQEFHPLISK---FPLLEDLSIISLETLERIMI----SSNRLMHLEVYNCSGL 333 (525)
Q Consensus 270 ~~~l~~L~~L~L~~~~-~~~~~~~~ll~~---~~~Le~L~L~~c~~l~~~~~----~~~~L~~L~l~~c~~L 333 (525)
+.+|++|+.|+|+++. +++..+..+... +++|++|+|++|..+++.++ .+++|++|++++|+.+
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 4556666666666653 666555554432 34666666666665554332 2456666666666544
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.32 E-value=4.7e-07 Score=80.27 Aligned_cols=35 Identities=31% Similarity=0.308 Sum_probs=18.1
Q ss_pred CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeee
Q 009796 161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV 195 (525)
Q Consensus 161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~ 195 (525)
++|++|++++|.+.. +..+..+++|++|+|++|.+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 64 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI 64 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc
Confidence 455555555555544 22234555555555555544
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=8e-07 Score=87.26 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=22.0
Q ss_pred CCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796 182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF 219 (525)
Q Consensus 182 l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~ 219 (525)
|++|+.|+|.. .+.. .-...+.+|++|++|++.++.
T Consensus 100 ~~~L~~l~L~~-~i~~-I~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKN-IEDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp CTTCCC-CBCT-TCCE-ECTTTTTTCTTCCEEEBCCSS
T ss_pred cCCCcEEECCc-cccc-hhHHHhhcCcccceEEcCCCC
Confidence 78888888876 3310 001235678888888887764
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.28 E-value=6.5e-07 Score=80.58 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=92.2
Q ss_pred cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--eecccCCCccEEEEeee
Q 009796 164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LRISEAHKLKSLILRFT 240 (525)
Q Consensus 164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c 240 (525)
++++++++.+.. |... .++|++|+|++|.++.-.....+..+++|++|+|++|..... -.+.++++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999998876 4433 348999999999884322122467899999999999864332 23557899999999999
Q ss_pred ccccceEE---E-eCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChh
Q 009796 241 YQELESVE---I-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQ 289 (525)
Q Consensus 241 ~~~l~~~~---~-~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~ 289 (525)
. +..+. + .+++|++|+++++. ...+..++.+++|+.|++++|.++.+
T Consensus 89 ~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 K--IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp C--CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred c--CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 6 33332 2 57999999999998 33456788999999999999988754
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.24 E-value=3.8e-07 Score=99.40 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=50.1
Q ss_pred eCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc
Q 009796 250 AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (525)
Q Consensus 250 ~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~ 311 (525)
.+++|+.|++++|. ...+..++.+++|+.|+|++|.++. ++..+.++++|+.|+|+++..
T Consensus 268 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 268 NLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCC
T ss_pred CCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCcc
Confidence 56788888888887 5567788999999999999999874 555588999999999998754
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=9.5e-07 Score=86.72 Aligned_cols=143 Identities=13% Similarity=0.045 Sum_probs=91.8
Q ss_pred CCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEee-----------------cCC
Q 009796 160 AKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFY-----------------CFG 220 (525)
Q Consensus 160 ~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~-----------------c~~ 220 (525)
|++|+.|.|.. .+.. ...+.+|++|+.|++..+.+.. .-...+.+|.++.++.+.. |..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 89999999998 6655 5668889999999998885410 0011233455454443222 211
Q ss_pred Cc--------------------------eeecc-------------cCCCccEEEEeeeccccceEE---E-eCCCccEE
Q 009796 221 LK--------------------------RLRIS-------------EAHKLKSLILRFTYQELESVE---I-AVPSLQQL 257 (525)
Q Consensus 221 l~--------------------------~l~i~-------------~l~~L~~L~l~~c~~~l~~~~---~-~~~~L~~L 257 (525)
+. .+.+. .|++|+.|++.++. +..+. + +|++|+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN--ATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC--CCEECTTTTTTCTTCCEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC--cceecHhhhhCCCCCCEE
Confidence 11 00000 27899999998773 44442 2 68899999
Q ss_pred Eecccc-ccceeeccCCCCcc-EEEeeCCCCChhhhhhhhcCCCCCcEEEecC
Q 009796 258 ELSFSR-VPRLLDVAECPHLR-KLVLFLPHFNDQEFHPLISKFPLLEDLSIIS 308 (525)
Q Consensus 258 ~l~~~~-~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~ 308 (525)
++..+- .-....|.+|++|+ .+.+.. .++.- -...+.+|++|+.|++..
T Consensus 256 ~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 256 KLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEEEEECS
T ss_pred ECCcccceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCccCCEEEeCC
Confidence 998865 22334688899999 999976 44431 245678899999999865
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.23 E-value=1.2e-06 Score=77.53 Aligned_cols=123 Identities=18% Similarity=0.127 Sum_probs=87.9
Q ss_pred ccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccEEEEe
Q 009796 163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSLILR 238 (525)
Q Consensus 163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~L~l~ 238 (525)
.+.++++++.+.. |. ...++|++|++++|.+.. .....+..+++|++|++++|.. ..+. +..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~~~p~--~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT--GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCT--TCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCC--CCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECC
Confidence 5678888887776 32 234789999999998742 1233467889999999998854 3332 3567899999999
Q ss_pred eec-cccceEE-EeCCCccEEEecccc-ccce-eeccCCCCccEEEeeCCCCChh
Q 009796 239 FTY-QELESVE-IAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHFNDQ 289 (525)
Q Consensus 239 ~c~-~~l~~~~-~~~~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~L~~~~~~~~ 289 (525)
+|. ..+..-. ..+++|++|+++++. ...+ ..+..+++|+.|++++|.++..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 886 2222211 257899999999988 3333 3367899999999999988763
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.21 E-value=9.2e-07 Score=79.66 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=77.3
Q ss_pred CcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-- 225 (525)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-- 225 (525)
....+|..+. ++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+.++++|++|+|++|.. ..+.
T Consensus 21 ~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l-~~i~~~ 96 (193)
T 2wfh_A 21 GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRL-RCIPPR 96 (193)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CBCCTT
T ss_pred CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCcc-CEeCHH
Confidence 3446666553 589999999998887 67788899999999999988421 223467889999999998864 2222
Q ss_pred -cccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCCh
Q 009796 226 -ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFND 288 (525)
Q Consensus 226 -i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 288 (525)
+.++++|+.|++++|. +. ...+..+..+++|+.|++++|.+..
T Consensus 97 ~f~~l~~L~~L~L~~N~--l~------------------~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 97 TFDGLKSLRLLSLHGND--IS------------------VVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTTTCTTCCEEECCSSC--CC------------------BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred HhCCCCCCCEEECCCCC--CC------------------eeChhhhhcCccccEEEeCCCCeec
Confidence 3344555555555442 11 1111246677888888888777643
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.14 E-value=6.1e-06 Score=83.18 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=71.1
Q ss_pred CccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee---ecccCCCccEEE
Q 009796 162 LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL---RISEAHKLKSLI 236 (525)
Q Consensus 162 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l---~i~~l~~L~~L~ 236 (525)
+|+.+.+.. .+.. ...+.+|++|+.++|..+.+.. +..-.-.|.+|+++.|..+ +..+ ...+|++|+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEe
Confidence 466666654 2222 3445666667777666554411 0000112566666666532 2322 233566777776
Q ss_pred EeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCCh----hhhhhhhcCCCCCcEEEecC
Q 009796 237 LRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND----QEFHPLISKFPLLEDLSIIS 308 (525)
Q Consensus 237 l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~----~~~~~ll~~~~~Le~L~L~~ 308 (525)
+..+...+..-.+...+|+.+.+...- .-....|.+|++|+.+.+..+.+.. ......+.+|++|+.+.|..
T Consensus 233 l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 233 IPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred cCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 654221111111222566777664433 1123356677777777776655431 11234466777777777753
No 145
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.95 E-value=4.1e-06 Score=79.41 Aligned_cols=36 Identities=14% Similarity=0.520 Sum_probs=34.1
Q ss_pred ccCCCCCHHHHHHHhcCCChHHHH-HHhhhchhhhhh
Q 009796 8 DHISDLPTFIIHHIMSFLSPKDVV-RTGILSTTWRKF 43 (525)
Q Consensus 8 D~is~LPd~iL~~Ils~L~~~d~~-r~s~vSrrWr~l 43 (525)
..+..||||+|.+||++||.++++ |+++|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999999999 999999999986
No 146
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.95 E-value=2e-06 Score=80.49 Aligned_cols=35 Identities=31% Similarity=0.573 Sum_probs=32.7
Q ss_pred cCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796 9 HISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF 43 (525)
Q Consensus 9 ~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~l 43 (525)
-|++||+||+.+||+||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999964
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.92 E-value=7.8e-06 Score=72.14 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=42.7
Q ss_pred cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796 150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF 219 (525)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~ 219 (525)
...+|..+. ++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+.++++|++|+|++|.
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence 345565543 677788888777766 44566777778888777776321 12234566777777777664
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.90 E-value=1.2e-05 Score=70.60 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=50.8
Q ss_pred cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796 150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-- 225 (525)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-- 225 (525)
...+|..+. ++|++|+|++|.+.. +..+.++++|++|+|++|.++. .....+.++++|++|+|++|.. ..+.
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l-~~~~~~ 96 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQL-KSIPRG 96 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-CCCCTT
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCcc-CEeCHH
Confidence 344565543 677788888877776 4456777788888888777632 1123345677777777777643 2221
Q ss_pred -cccCCCccEEEEeee
Q 009796 226 -ISEAHKLKSLILRFT 240 (525)
Q Consensus 226 -i~~l~~L~~L~l~~c 240 (525)
+..+++|+.|++++|
T Consensus 97 ~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 97 AFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhcCCCCCCEEEeCCC
Confidence 223444555544444
No 149
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.66 E-value=1.3e-05 Score=82.20 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=37.4
Q ss_pred CCCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhh
Q 009796 4 TVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ 44 (525)
Q Consensus 4 ~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw 44 (525)
.-..|.|+.||+|++.+||+||+.+|+++++.|||+|+++-
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999763
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.66 E-value=1.7e-05 Score=70.65 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=63.2
Q ss_pred CCCCcccEEEecee-eechHHH---HHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCcc
Q 009796 180 ANLQSLKKLSLDEV-YVNDQMV---QSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQ 255 (525)
Q Consensus 180 ~~l~~L~~L~L~~~-~~~~~~l---~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~ 255 (525)
...++|++|+|++| .+++... ...+..++.|++|+|++|..-.. ... .+.......++|+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~-g~~---------------~l~~~L~~n~~L~ 96 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP-VAF---------------ALAEMLKVNNTLK 96 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH-HHH---------------HHHHHHHHCSSCC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH-HHH---------------HHHHHHHhCCCcC
Confidence 44667777777777 6644433 33345566666666666643110 000 0000001234555
Q ss_pred EEEecccc-c-----cceeeccCCCCccEEEe--eCCCCChhh---hhhhhcCCCCCcEEEecCcc
Q 009796 256 QLELSFSR-V-----PRLLDVAECPHLRKLVL--FLPHFNDQE---FHPLISKFPLLEDLSIISLE 310 (525)
Q Consensus 256 ~L~l~~~~-~-----~~~~~~~~l~~L~~L~L--~~~~~~~~~---~~~ll~~~~~Le~L~L~~c~ 310 (525)
+|++++|. . .....+...++|+.|+| +++.+++.. +...+...+.|++|+|+++.
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 55555554 1 12234556677888888 778887754 34455666788888887764
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.64 E-value=7.8e-05 Score=75.03 Aligned_cols=141 Identities=12% Similarity=0.122 Sum_probs=99.5
Q ss_pred cccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeee--chHHHHHHHhCCcCccEEEEeecCCCceee---cccC
Q 009796 156 TIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV--NDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEA 229 (525)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l 229 (525)
.+..|.+|+.+++..+.+.. +.....+.+|+.+.|..+-. .. ..+.+|++|+++.+..+ +..+. ..+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~l~l~~~--l~~I~~~aF~~- 247 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKTIEIPEN--VSTIGQEAFRE- 247 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCCEECCTT--CCEECTTTTTT-
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCEEecCCC--ccCcccccccc-
Confidence 34578999999999988776 44444479999999975421 22 34678999999999764 33333 334
Q ss_pred CCccEEEEeeeccccceEE----EeCCCccEEEecccc-c------cceeeccCCCCccEEEeeCCCCChhhhhhhhcCC
Q 009796 230 HKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR-V------PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKF 298 (525)
Q Consensus 230 ~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~-~------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~ 298 (525)
.+|+.+.+.. .+..+. .+|++|+.+.+.++. . -....|.+|++|+.+.|.. .++.- -...+.+|
T Consensus 248 ~~L~~i~lp~---~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I-~~~aF~~c 322 (401)
T 4fdw_A 248 SGITTVKLPN---GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL-GQGLLGGN 322 (401)
T ss_dssp CCCSEEEEET---TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE-CTTTTTTC
T ss_pred CCccEEEeCC---CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE-hhhhhcCC
Confidence 6899999854 344442 268999999998765 2 2334688999999999974 34331 24457889
Q ss_pred CCCcEEEecC
Q 009796 299 PLLEDLSIIS 308 (525)
Q Consensus 299 ~~Le~L~L~~ 308 (525)
++|+.+.|..
T Consensus 323 ~~L~~l~lp~ 332 (401)
T 4fdw_A 323 RKVTQLTIPA 332 (401)
T ss_dssp CSCCEEEECT
T ss_pred CCccEEEECc
Confidence 9999999854
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=2.3e-05 Score=69.80 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=41.6
Q ss_pred CCCCccEEEecCC-cCCC------CCCCCCCCcccEEEeceeeechHH---HHHHHhCCcCccEEEEeecCC
Q 009796 159 SAKLLTSLKLFGC-KLEQ------PSHCANLQSLKKLSLDEVYVNDQM---VQSLVRECRVLEDLSFFYCFG 220 (525)
Q Consensus 159 ~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~~~~~~---l~~ll~~c~~Le~L~L~~c~~ 220 (525)
.+++|++|+|++| .+.. .......++|++|+|++|.+++.. +...+..++.|++|+|++|..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 4567778888777 6654 223345678888888888885544 344456677888888887753
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.51 E-value=8.2e-05 Score=65.19 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=31.9
Q ss_pred CCCccEEEecccc-cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796 251 VPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL 309 (525)
Q Consensus 251 ~~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c 309 (525)
+++|++|+++++. .. .+..+..+++|+.|+|++|.++.- ....+.++++|+.|+|++.
T Consensus 53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCEEEeCCC
Confidence 3445555555544 11 122345666777777776666642 2334566677777777664
No 154
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.51 E-value=2.9e-05 Score=78.94 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=38.1
Q ss_pred CCCCCCccCCCCCHH----HHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796 2 DETVDADHISDLPTF----IIHHIMSFLSPKDVVRTGILSTTWRKF 43 (525)
Q Consensus 2 ~~~~~~D~is~LPd~----iL~~Ils~L~~~d~~r~s~vSrrWr~l 43 (525)
++....|.|+.||+| |+.+||+||+.++++++++|||+|+++
T Consensus 3 ~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred ChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 445578999999999 999999999999999999999999954
No 155
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.51 E-value=4.8e-05 Score=77.47 Aligned_cols=41 Identities=32% Similarity=0.545 Sum_probs=37.4
Q ss_pred CCCCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796 3 ETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF 43 (525)
Q Consensus 3 ~~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~l 43 (525)
+....|.|+.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 34467999999999999999999999999999999999964
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.48 E-value=7.5e-05 Score=65.72 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=62.1
Q ss_pred cCCeEEEEEeecCCCCcccC-CccccCCCCccEEEecCCcCCC-CC-CCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796 134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ-PS-HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (525)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L 210 (525)
.+++.|+++. .....+ |..+..+++|++|+|++|.+.. +. .+.++++|++|+|++|.+.. .....+..+++|
T Consensus 33 ~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNN----NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEeCC----CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence 5788888875 223344 5567789999999999999988 44 45789999999999998842 112346778899
Q ss_pred cEEEEeecCC
Q 009796 211 EDLSFFYCFG 220 (525)
Q Consensus 211 e~L~L~~c~~ 220 (525)
++|+|++|..
T Consensus 108 ~~L~L~~N~~ 117 (174)
T 2r9u_A 108 THIYLYNNPW 117 (174)
T ss_dssp SEEECCSSCB
T ss_pred CEEEeCCCCc
Confidence 9999988753
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.34 E-value=0.00011 Score=72.46 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=60.7
Q ss_pred CcccCCccccCCCCccEEEecC-CcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee
Q 009796 149 SVNALPQTIFSAKLLTSLKLFG-CKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR 225 (525)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~-~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~ 225 (525)
....+|. +..+++|+.|+|++ |.+.. + ..+.++++|+.|+|++|.+.. ..+..+.++++|++|+|++|.. ..+.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l-~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNAL-ESLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCC-SCCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCcc-ceeC
Confidence 3456788 77888899999986 88877 3 567889999999999988732 1234567888888888888753 2222
Q ss_pred cc--cCCCccEEEEeeec
Q 009796 226 IS--EAHKLKSLILRFTY 241 (525)
Q Consensus 226 i~--~l~~L~~L~l~~c~ 241 (525)
.. ....|+.|++.+|.
T Consensus 97 ~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp STTTCSCCCCEEECCSSC
T ss_pred HHHcccCCceEEEeeCCC
Confidence 11 11226666665553
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.19 E-value=0.00066 Score=68.06 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=23.9
Q ss_pred CCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEec
Q 009796 251 VPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (525)
Q Consensus 251 ~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~ 307 (525)
+.+|+.+.+..+. .-....+..++.++.+......+.+ ..+.++.+|+.+.+.
T Consensus 252 ~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~----~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE----KTFYGCSSLTEVKLL 305 (394)
T ss_dssp CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT----TTTTTCTTCCEEEEC
T ss_pred cccceeEEcCCCcceeeccccccccccceeccCceeecc----ccccccccccccccc
Confidence 4455555554433 1112234455555555544332221 234455666666654
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.01 E-value=0.00029 Score=69.27 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=48.6
Q ss_pred EEEecCC-cCCC-CCCCCCCCcccEEEece-eeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccEEEEe
Q 009796 165 SLKLFGC-KLEQ-PSHCANLQSLKKLSLDE-VYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSLILR 238 (525)
Q Consensus 165 ~L~L~~~-~l~~-~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~L~l~ 238 (525)
.++++++ .+.. |. +..+++|++|+|++ |.+..- ....+.++++|++|+|++|. +..+. +.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCC
Confidence 4677777 7777 66 88889999999986 877321 12346778888888888875 33332 2345555555555
Q ss_pred eec
Q 009796 239 FTY 241 (525)
Q Consensus 239 ~c~ 241 (525)
+|.
T Consensus 89 ~N~ 91 (347)
T 2ifg_A 89 FNA 91 (347)
T ss_dssp SSC
T ss_pred CCc
Confidence 553
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.84 E-value=0.00085 Score=67.24 Aligned_cols=61 Identities=3% Similarity=0.003 Sum_probs=30.7
Q ss_pred ccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEE
Q 009796 356 VSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMES 431 (525)
Q Consensus 356 ~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~ 431 (525)
++.++.+|+.++|.. .+... -..-+.++.+|+++++..+ ... +++. .+....+|+.+.+-.
T Consensus 315 aF~~c~~L~~i~lp~--~v~~I----~~~aF~~c~~L~~i~lp~~---l~~-I~~~-----aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPY--LVEEI----GKRSFRGCTSLSNINFPLS---LRK-IGAN-----AFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEE----CTTTTTTCTTCCEECCCTT---CCE-ECTT-----TBTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCC--cccEE----hHHhccCCCCCCEEEECcc---ccE-ehHH-----HhhCCCCCCEEEECC
Confidence 444567777777641 11111 1123466777777766422 111 3322 233466777777743
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.67 E-value=0.0066 Score=60.68 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=39.9
Q ss_pred CCCcceEEEecCCC--C-cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCC
Q 009796 340 APNLVSFDFEDNPI--P-IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHP 416 (525)
Q Consensus 340 ~p~L~~l~~~g~~~--~-~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~ 416 (525)
+++|+.+.+..... + ..+.++.+|+++.|.. .+.. .-..-+.+|.+|+++.|-.+ ... +++..
T Consensus 287 c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~----I~~~aF~~C~~L~~i~ip~s---v~~-I~~~a---- 352 (394)
T 4gt6_A 287 CPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQ----ILDDAFAGCEQLERIAIPSS---VTK-IPESA---- 352 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCE----ECTTTTTTCTTCCEEEECTT---CCB-CCGGG----
T ss_pred ccccccccCCCcccccCceeecCCCCcCEEEeCC--cccE----ehHhHhhCCCCCCEEEECcc---cCE-EhHhH----
Confidence 45555555533211 1 3455677888888741 1111 11233567888888777421 112 33222
Q ss_pred CCCCCcccceEEEEEe
Q 009796 417 SLPLQVESLSLFMESF 432 (525)
Q Consensus 417 ~~~~~~~L~~L~L~~~ 432 (525)
+....+|+.+.+.++
T Consensus 353 -F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 353 -FSNCTALNNIEYSGS 367 (394)
T ss_dssp -GTTCTTCCEEEESSC
T ss_pred -hhCCCCCCEEEECCc
Confidence 334677887777654
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.61 E-value=0.00053 Score=64.45 Aligned_cols=58 Identities=22% Similarity=0.158 Sum_probs=29.3
Q ss_pred CCCccEEEecCCcCCC----CCCCCCCCcccEEEeceeeech-HHHHHHHhCCcCccEEEEeecC
Q 009796 160 AKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVND-QMVQSLVRECRVLEDLSFFYCF 219 (525)
Q Consensus 160 ~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~-~~l~~ll~~c~~Le~L~L~~c~ 219 (525)
+++|+.|+|++|.+.. +..+..+++|+.|+|++|.+.+ ..+.. +..+ +|++|+|.+|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTST
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCc
Confidence 4566666666666554 1222356666666666666522 12222 1222 55666665554
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.04 E-value=0.0023 Score=60.01 Aligned_cols=15 Identities=13% Similarity=-0.068 Sum_probs=9.5
Q ss_pred hCCcCccEEEEeecC
Q 009796 205 RECRVLEDLSFFYCF 219 (525)
Q Consensus 205 ~~c~~Le~L~L~~c~ 219 (525)
.++|+|++|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~ 181 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR 181 (267)
T ss_dssp HHCTTCCEEECTTSC
T ss_pred hhCCCCCEEECCCCC
Confidence 456666666666664
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.36 E-value=0.022 Score=56.81 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=52.1
Q ss_pred cCCCccEEEEeeeccccceEE-EeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEE
Q 009796 228 EAHKLKSLILRFTYQELESVE-IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS 305 (525)
Q Consensus 228 ~l~~L~~L~l~~c~~~l~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~ 305 (525)
+|.+|+.+.+......+..-. .+|++|+.+.+...- .-....|.+|.+|+.+.|..+ ++. .-...+.+|.+|+++.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCEQLERIA 340 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEE
T ss_pred ecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCCCCCEEE
Confidence 456677666643221111111 246777777775443 222235677788888877432 221 1133466778888887
Q ss_pred ecC-ccchhH-hhhcCcccceEcccc
Q 009796 306 IIS-LETLER-IMISSNRLMHLEVYN 329 (525)
Q Consensus 306 L~~-c~~l~~-~~~~~~~L~~L~l~~ 329 (525)
|.. ...+.. ....|.+|+.+.+.+
T Consensus 341 ip~sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 341 IPSSVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp ECTTCCBCCGGGGTTCTTCCEEEESS
T ss_pred ECcccCEEhHhHhhCCCCCCEEEECC
Confidence 743 222222 222356777776654
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.98 E-value=0.048 Score=48.34 Aligned_cols=36 Identities=11% Similarity=0.031 Sum_probs=18.8
Q ss_pred CCCccEEEeeCCCCChhhhhh---hhcCCCCCcEEEecC
Q 009796 273 CPHLRKLVLFLPHFNDQEFHP---LISKFPLLEDLSIIS 308 (525)
Q Consensus 273 l~~L~~L~L~~~~~~~~~~~~---ll~~~~~Le~L~L~~ 308 (525)
-+.|+.|+|+.|.|++..... .+..-..|++|+|++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 345666666666666543332 233334466666654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.80 E-value=0.2 Score=49.34 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=77.4
Q ss_pred cccCCCCccEEEecCCcCCC--------------CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC-
Q 009796 156 TIFSAKLLTSLKLFGCKLEQ--------------PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG- 220 (525)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~--------------~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~- 220 (525)
.+..|.+++.+.+....... ...+..+..+..+.+...... ........|.+|+.+.+...-.
T Consensus 153 ~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~f~~~~~l~~i~~~~~~~~ 230 (379)
T 4h09_A 153 IGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT--VTAYGFSYGKNLKKITITSGVTT 230 (379)
T ss_dssp TTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE--ECTTTTTTCSSCSEEECCTTCCE
T ss_pred hhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE--EeecccccccccceeeeccceeE
Confidence 45567888887776542211 112233444555544332110 0012244567777776643311
Q ss_pred CceeecccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhh
Q 009796 221 LKRLRISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLI 295 (525)
Q Consensus 221 l~~l~i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll 295 (525)
+..-...+|.+|+.+.+... +..+. .++.+|+.+.+...- .-....|.+|++|+.+.+..+.++.- -...+
T Consensus 231 i~~~~f~~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I-~~~aF 306 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN---VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETL-EPRVF 306 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT---CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEE-CTTTT
T ss_pred EccccccCCccceEEEcCCC---ccEeCccccceeehhccccccccceecccccccccccccccccccccccee-hhhhh
Confidence 11122334567777766432 22221 146677777775543 22223577888888888876655431 23456
Q ss_pred cCCCCCcEEEec
Q 009796 296 SKFPLLEDLSII 307 (525)
Q Consensus 296 ~~~~~Le~L~L~ 307 (525)
.+|.+|+.+.|.
T Consensus 307 ~~c~~L~~i~lp 318 (379)
T 4h09_A 307 MDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEECC
T ss_pred cCCCCCCEEEcC
Confidence 788888888885
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.59 E-value=0.098 Score=46.33 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHHc--CCeEEEE
Q 009796 121 SPLFDKWVELAMEN--GVKELDF 141 (525)
Q Consensus 121 ~~~~~~wl~~~~~~--~l~~L~l 141 (525)
..+++.++..+... .+++|+|
T Consensus 26 ~t~v~~~l~~ll~~n~~L~~L~L 48 (197)
T 1pgv_A 26 DTDVESCINRLREDDTDLKEVNI 48 (197)
T ss_dssp -CCHHHHHHHHHTTCSSCCEEEC
T ss_pred CCCHHHHHHHHHhcCCCccEEEC
Confidence 34566666655442 3555554
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.29 E-value=0.27 Score=48.36 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=85.3
Q ss_pred cCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeee--chHHHHHHHhCCcCccEEEEeec-CCCceeecccCCCcc
Q 009796 158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV--NDQMVQSLVRECRVLEDLSFFYC-FGLKRLRISEAHKLK 233 (525)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~c~~Le~L~L~~c-~~l~~l~i~~l~~L~ 233 (525)
..+.++..+.+....... ...+..+.+|+.+.+..... .. ..+.+|..|+.+.+..+ ..+......+|.+|+
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~----~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGD----GAFYGMKALDEIAIPKNVTSIGSFLLQNCTALK 266 (379)
T ss_dssp CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECT----TTTTTCSSCCEEEECTTCCEECTTTTTTCTTCC
T ss_pred cccccccccccccceeEEeecccccccccceeeeccceeEEcc----ccccCCccceEEEcCCCccEeCccccceeehhc
Confidence 345566666655432211 34556677888887754321 22 23567888888888543 112222344567888
Q ss_pred EEEEeeeccccceEE----EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEec
Q 009796 234 SLILRFTYQELESVE----IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (525)
Q Consensus 234 ~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~ 307 (525)
.+.+... +..+. .+|++|+.+.+.++. .-....|.+|.+|+.+.|..+ ++. .-...+.+|.+|+.+.+.
T Consensus 267 ~i~l~~~---i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 267 TLNFYAK---VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCC---CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCC
T ss_pred ccccccc---ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEEC
Confidence 8877543 33332 257889998887654 222346889999999998533 322 123457789999988875
Q ss_pred C
Q 009796 308 S 308 (525)
Q Consensus 308 ~ 308 (525)
.
T Consensus 342 ~ 342 (379)
T 4h09_A 342 K 342 (379)
T ss_dssp T
T ss_pred C
Confidence 3
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=83.00 E-value=0.76 Score=37.54 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=32.0
Q ss_pred cCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeee
Q 009796 152 ALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV 195 (525)
Q Consensus 152 ~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~ 195 (525)
.+|..+. .+|+.|+|++|.++. +..+..+++|++|+|++|.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5564432 468999999998887 44567788999999998877
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=51.98 E-value=9.3 Score=30.83 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=16.1
Q ss_pred CccEEEeeCCCCChhhhhhhhcCCCCCcEEEecC
Q 009796 275 HLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIIS 308 (525)
Q Consensus 275 ~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~ 308 (525)
+|+.|+|++|.++.- ....+..+++|+.|+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTGNNLTAL-PPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCcc-ChhhhhhccccCEEEecC
Confidence 455555555554431 123344455555555554
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.37 E-value=59 Score=24.63 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=20.7
Q ss_pred cCCCCccEEEecCCcCCC-CCCCCCCCcccEEEece
Q 009796 158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDE 192 (525)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~ 192 (525)
.+|.+|+.+.|...--.- ...+.+|.+|+.+.+.+
T Consensus 17 ~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 17 AGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 357777777776542221 34556666666666654
No 172
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=24.48 E-value=58 Score=20.69 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=12.3
Q ss_pred CccCCCCCHHHHHHHhcC
Q 009796 7 ADHISDLPTFIIHHIMSF 24 (525)
Q Consensus 7 ~D~is~LPd~iL~~Ils~ 24 (525)
.+-|+.||.||-..|++-
T Consensus 18 ~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGGTTTSCHHHHHHHTTC
T ss_pred HHHHHHCcHHHHHHHHhc
Confidence 345777777777777764
Done!