Query 009797
Match_columns 525
No_of_seqs 419 out of 2489
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 17:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 1.4E-62 3.1E-67 521.4 35.0 469 2-509 165-665 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 1.8E-31 3.9E-36 272.8 23.6 222 254-508 161-393 (421)
3 KOG2059 Ras GTPase-activating 99.9 6.1E-22 1.3E-26 201.8 13.7 226 260-524 5-250 (800)
4 cd04016 C2_Tollip C2 domain pr 99.9 5.5E-21 1.2E-25 161.8 14.1 119 259-388 1-121 (121)
5 cd08677 C2A_Synaptotagmin-13 C 99.8 1.4E-20 2.9E-25 156.7 12.0 101 380-509 1-106 (118)
6 cd04042 C2A_MCTP_PRT C2 domain 99.8 7.7E-20 1.7E-24 156.5 14.8 121 261-390 1-121 (121)
7 cd08682 C2_Rab11-FIP_classI C2 99.8 5.6E-20 1.2E-24 158.5 13.4 118 262-386 1-125 (126)
8 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.7E-19 3.6E-24 153.2 14.4 115 261-389 1-115 (116)
9 cd08681 C2_fungal_Inn1p-like C 99.8 1E-19 2.2E-24 155.1 13.1 117 260-388 1-118 (118)
10 cd08375 C2_Intersectin C2 doma 99.8 2E-19 4.3E-24 156.4 14.5 122 254-388 9-135 (136)
11 cd04036 C2_cPLA2 C2 domain pre 99.8 2.6E-19 5.5E-24 152.8 14.8 116 262-388 2-117 (119)
12 cd08395 C2C_Munc13 C2 domain t 99.8 2E-19 4.4E-24 151.8 13.5 107 261-368 1-114 (120)
13 cd08677 C2A_Synaptotagmin-13 C 99.8 7.8E-20 1.7E-24 152.1 10.0 106 255-363 9-117 (118)
14 cd08379 C2D_MCTP_PRT_plant C2 99.8 4.3E-19 9.2E-24 151.2 13.2 116 261-384 1-125 (126)
15 KOG1030 Predicted Ca2+-depende 99.8 1.9E-19 4.1E-24 155.3 10.7 100 257-360 3-102 (168)
16 COG5038 Ca2+-dependent lipid-b 99.8 7.4E-18 1.6E-22 181.4 24.4 287 219-513 655-1134(1227)
17 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1E-18 2.2E-23 149.9 13.6 122 261-386 1-122 (123)
18 cd04019 C2C_MCTP_PRT_plant C2 99.8 9.5E-19 2.1E-23 154.5 13.7 128 261-391 1-134 (150)
19 cd04028 C2B_RIM1alpha C2 domai 99.8 1E-18 2.2E-23 152.5 13.7 111 258-369 27-141 (146)
20 cd04022 C2A_MCTP_PRT_plant C2 99.8 1E-18 2.3E-23 150.7 13.1 121 261-389 1-126 (127)
21 cd04044 C2A_Tricalbin-like C2 99.8 1.4E-18 3.1E-23 149.4 13.8 122 259-390 1-124 (124)
22 cd04024 C2A_Synaptotagmin-like 99.8 1.4E-18 3.1E-23 150.3 13.5 123 260-388 1-128 (128)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.1E-18 4.6E-23 147.1 14.0 119 262-388 2-121 (121)
24 cd08381 C2B_PI3K_class_II C2 d 99.8 8.5E-19 1.8E-23 149.7 11.5 105 259-364 12-121 (122)
25 cd08678 C2_C21orf25-like C2 do 99.8 3.1E-18 6.7E-23 147.5 15.0 122 262-391 1-122 (126)
26 cd08400 C2_Ras_p21A1 C2 domain 99.8 4.3E-18 9.2E-23 146.5 15.1 122 259-390 3-124 (126)
27 cd08407 C2B_Synaptotagmin-13 C 99.8 1E-18 2.2E-23 151.3 11.2 109 379-516 1-120 (138)
28 cd08391 C2A_C2C_Synaptotagmin_ 99.8 2.7E-18 5.8E-23 147.0 13.1 115 260-388 1-121 (121)
29 cd04046 C2_Calpain C2 domain p 99.8 6.7E-18 1.5E-22 145.4 15.2 123 258-390 1-123 (126)
30 cd08393 C2A_SLP-1_2 C2 domain 99.8 2.3E-18 5.1E-23 147.9 11.5 110 255-364 10-124 (125)
31 cd04015 C2_plant_PLD C2 domain 99.8 7.7E-18 1.7E-22 150.3 15.2 124 258-389 5-158 (158)
32 cd04029 C2A_SLP-4_5 C2 domain 99.8 3.8E-18 8.3E-23 146.4 12.2 112 379-523 1-122 (125)
33 cd08392 C2A_SLP-3 C2 domain fi 99.8 3.9E-18 8.5E-23 146.6 11.8 116 379-524 1-126 (128)
34 cd04029 C2A_SLP-4_5 C2 domain 99.8 4.1E-18 9E-23 146.2 11.9 110 255-364 10-124 (125)
35 cd08378 C2B_MCTP_PRT_plant C2 99.8 9E-18 1.9E-22 143.2 13.8 115 261-389 1-120 (121)
36 cd08406 C2B_Synaptotagmin-12 C 99.8 2.5E-18 5.4E-23 149.1 10.3 108 380-516 2-118 (136)
37 cd08393 C2A_SLP-1_2 C2 domain 99.8 4.6E-18 9.9E-23 146.0 11.4 112 379-523 1-122 (125)
38 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1.2E-17 2.7E-22 145.4 14.3 122 261-388 1-132 (133)
39 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.4E-17 3E-22 142.1 14.3 118 260-388 1-118 (119)
40 cd08387 C2A_Synaptotagmin-8 C2 99.8 5.4E-18 1.2E-22 145.7 11.6 110 255-364 11-122 (124)
41 cd04041 C2A_fungal C2 domain f 99.8 5.2E-18 1.1E-22 142.6 11.1 96 260-355 1-100 (111)
42 cd08381 C2B_PI3K_class_II C2 d 99.8 6.1E-18 1.3E-22 144.5 11.6 111 379-524 1-120 (122)
43 cd04028 C2B_RIM1alpha C2 domai 99.8 1.3E-17 2.8E-22 145.5 13.0 111 376-523 14-134 (146)
44 cd08680 C2_Kibra C2 domain fou 99.7 1.1E-17 2.5E-22 142.4 12.3 112 381-524 2-123 (124)
45 cd08385 C2A_Synaptotagmin-1-5- 99.7 1E-17 2.2E-22 144.0 12.1 110 255-364 11-122 (124)
46 cd04043 C2_Munc13_fungal C2 do 99.7 2.7E-17 5.8E-22 141.9 14.6 118 261-390 2-122 (126)
47 cd04014 C2_PKC_epsilon C2 doma 99.7 2.5E-17 5.5E-22 143.1 14.4 116 259-390 3-130 (132)
48 cd04010 C2B_RasA3 C2 domain se 99.7 1.5E-17 3.3E-22 146.0 12.9 124 261-386 1-147 (148)
49 cd08388 C2A_Synaptotagmin-4-11 99.7 1.3E-17 2.8E-22 143.7 12.2 110 255-364 11-126 (128)
50 cd08685 C2_RGS-like C2 domain 99.7 1.3E-17 2.9E-22 141.6 11.1 101 417-524 11-118 (119)
51 cd08680 C2_Kibra C2 domain fou 99.7 1.1E-17 2.3E-22 142.6 10.4 102 255-356 9-115 (124)
52 cd04039 C2_PSD C2 domain prese 99.7 1.4E-17 3E-22 138.7 10.8 94 260-356 1-99 (108)
53 cd08692 C2B_Tac2-N C2 domain s 99.7 1.7E-17 3.6E-22 141.6 11.2 108 381-517 2-119 (135)
54 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 4.8E-17 1E-21 139.0 13.6 118 262-387 2-120 (121)
55 cd04039 C2_PSD C2 domain prese 99.7 2.7E-17 5.8E-22 137.1 11.7 92 418-513 1-99 (108)
56 cd08382 C2_Smurf-like C2 domai 99.7 5.7E-17 1.2E-21 138.9 13.8 118 262-386 2-122 (123)
57 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.1E-17 4.5E-22 142.1 11.0 101 255-355 10-115 (128)
58 KOG1030 Predicted Ca2+-depende 99.7 1.4E-17 3.1E-22 143.6 9.9 95 416-516 4-101 (168)
59 cd08373 C2A_Ferlin C2 domain f 99.7 8.7E-17 1.9E-21 138.8 14.5 117 266-393 2-120 (127)
60 cd08387 C2A_Synaptotagmin-8 C2 99.7 3.4E-17 7.3E-22 140.8 11.5 113 379-524 2-121 (124)
61 cd04017 C2D_Ferlin C2 domain f 99.7 1.1E-16 2.4E-21 139.6 14.8 120 261-391 2-134 (135)
62 cd08386 C2A_Synaptotagmin-7 C2 99.7 5.5E-17 1.2E-21 139.7 12.4 110 255-364 11-123 (125)
63 cd04032 C2_Perforin C2 domain 99.7 6.2E-17 1.3E-21 138.2 12.3 106 246-355 13-120 (127)
64 cd08389 C2A_Synaptotagmin-14_1 99.7 5E-17 1.1E-21 139.3 11.7 109 255-364 11-122 (124)
65 cd04050 C2B_Synaptotagmin-like 99.7 5.3E-17 1.1E-21 135.1 11.1 98 261-364 1-100 (105)
66 cd08385 C2A_Synaptotagmin-1-5- 99.7 5.5E-17 1.2E-21 139.5 11.6 113 379-524 2-121 (124)
67 cd04016 C2_Tollip C2 domain pr 99.7 1E-16 2.2E-21 135.7 12.4 97 417-523 1-101 (121)
68 cd08685 C2_RGS-like C2 domain 99.7 3.8E-17 8.2E-22 138.8 9.7 105 258-363 10-118 (119)
69 cd04030 C2C_KIAA1228 C2 domain 99.7 8.8E-17 1.9E-21 138.8 12.1 116 378-524 1-125 (127)
70 cd04030 C2C_KIAA1228 C2 domain 99.7 9.9E-17 2.2E-21 138.5 12.1 110 255-364 11-126 (127)
71 cd08521 C2A_SLP C2 domain firs 99.7 7.4E-17 1.6E-21 138.5 10.9 110 255-364 9-123 (123)
72 cd08388 C2A_Synaptotagmin-4-11 99.7 1.2E-16 2.7E-21 137.6 12.3 106 378-512 1-115 (128)
73 cd04031 C2A_RIM1alpha C2 domai 99.7 1.3E-16 2.7E-21 137.4 12.4 112 379-524 2-123 (125)
74 cd04031 C2A_RIM1alpha C2 domai 99.7 1.2E-16 2.7E-21 137.5 11.7 109 255-364 11-124 (125)
75 cd08390 C2A_Synaptotagmin-15-1 99.7 1.7E-16 3.7E-21 136.2 12.5 110 255-364 9-121 (123)
76 cd04027 C2B_Munc13 C2 domain s 99.7 3.5E-16 7.6E-21 134.8 14.2 115 261-386 2-127 (127)
77 cd08676 C2A_Munc13-like C2 dom 99.7 8.4E-17 1.8E-21 141.7 10.5 105 254-363 22-152 (153)
78 KOG1013 Synaptic vesicle prote 99.7 1.6E-17 3.4E-22 156.4 6.2 236 255-525 88-339 (362)
79 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.1E-16 4.5E-21 141.6 13.2 115 379-510 1-125 (162)
80 cd04040 C2D_Tricalbin-like C2 99.7 3E-16 6.5E-21 133.0 13.2 113 262-383 1-113 (115)
81 cd08394 C2A_Munc13 C2 domain f 99.7 2.5E-16 5.4E-21 132.4 12.2 98 417-524 1-98 (127)
82 cd08688 C2_KIAA0528-like C2 do 99.7 1.2E-16 2.7E-21 134.0 10.1 100 262-364 1-107 (110)
83 cd08690 C2_Freud-1 C2 domain f 99.7 6.9E-16 1.5E-20 135.6 15.1 124 260-390 4-138 (155)
84 cd04049 C2_putative_Elicitor-r 99.7 1.9E-16 4.2E-21 136.1 11.3 103 260-365 1-107 (124)
85 cd08406 C2B_Synaptotagmin-12 C 99.7 9E-17 1.9E-21 139.4 8.8 108 255-364 10-121 (136)
86 cd04051 C2_SRC2_like C2 domain 99.7 2.2E-16 4.7E-21 135.9 10.9 115 261-384 1-125 (125)
87 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.2E-16 4.8E-21 141.4 11.2 109 256-364 23-136 (162)
88 cd08394 C2A_Munc13 C2 domain f 99.7 4.4E-16 9.5E-21 130.9 11.9 101 259-368 1-103 (127)
89 cd08409 C2B_Synaptotagmin-15 C 99.7 3E-16 6.5E-21 136.9 11.4 102 379-509 1-110 (137)
90 cd04045 C2C_Tricalbin-like C2 99.7 3.1E-16 6.8E-21 133.5 11.2 102 260-365 1-102 (120)
91 cd04038 C2_ArfGAP C2 domain pr 99.7 3.3E-16 7.1E-21 137.2 11.1 93 259-356 1-93 (145)
92 cd04050 C2B_Synaptotagmin-like 99.7 3.6E-16 7.7E-21 130.1 10.7 96 419-524 1-99 (105)
93 cd04037 C2E_Ferlin C2 domain f 99.7 2.8E-16 6.1E-21 134.7 10.2 120 261-390 1-120 (124)
94 cd08408 C2B_Synaptotagmin-14_1 99.7 3E-16 6.5E-21 136.8 10.5 101 380-509 2-112 (138)
95 cd08682 C2_Rab11-FIP_classI C2 99.7 3.1E-16 6.8E-21 135.1 10.1 87 420-510 1-94 (126)
96 cd08404 C2B_Synaptotagmin-4 C2 99.7 5.1E-16 1.1E-20 135.6 11.5 109 379-516 1-118 (136)
97 cd08379 C2D_MCTP_PRT_plant C2 99.7 4.5E-16 9.9E-21 132.6 10.9 93 419-513 1-101 (126)
98 cd08407 C2B_Synaptotagmin-13 C 99.7 2E-16 4.4E-21 137.0 8.8 108 255-364 10-123 (138)
99 cd08521 C2A_SLP C2 domain firs 99.7 5.9E-16 1.3E-20 132.8 11.6 112 380-524 1-122 (123)
100 cd08410 C2B_Synaptotagmin-17 C 99.7 4.5E-16 9.7E-21 135.6 10.9 101 380-509 1-110 (135)
101 cd08395 C2C_Munc13 C2 domain t 99.7 5.8E-16 1.3E-20 130.8 11.1 91 419-513 1-102 (120)
102 cd08402 C2B_Synaptotagmin-1 C2 99.7 5.1E-16 1.1E-20 135.6 11.1 102 379-509 1-111 (136)
103 cd04009 C2B_Munc13-like C2 dom 99.7 5.8E-16 1.2E-20 134.6 11.3 100 256-355 12-119 (133)
104 cd04032 C2_Perforin C2 domain 99.7 6.8E-16 1.5E-20 131.8 11.2 94 415-512 25-120 (127)
105 cd08405 C2B_Synaptotagmin-7 C2 99.7 6.4E-16 1.4E-20 135.0 11.1 103 379-510 1-112 (136)
106 PLN03008 Phospholipase D delta 99.7 9.7E-16 2.1E-20 163.1 14.5 130 258-395 12-183 (868)
107 cd04018 C2C_Ferlin C2 domain t 99.7 8E-16 1.7E-20 135.3 11.5 93 261-356 1-108 (151)
108 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.4E-15 3E-20 130.9 12.8 105 379-512 2-114 (125)
109 cd08691 C2_NEDL1-like C2 domai 99.7 3E-15 6.4E-20 129.7 14.8 118 261-386 2-136 (137)
110 cd04019 C2C_MCTP_PRT_plant C2 99.7 9.3E-16 2E-20 135.5 11.8 100 419-523 1-104 (150)
111 cd04009 C2B_Munc13-like C2 dom 99.6 1.3E-15 2.8E-20 132.4 12.1 103 379-510 2-117 (133)
112 cd08389 C2A_Synaptotagmin-14_1 99.6 1.2E-15 2.6E-20 130.8 11.6 104 379-512 2-113 (124)
113 cd04018 C2C_Ferlin C2 domain t 99.6 9.5E-16 2.1E-20 134.8 11.1 90 419-512 1-107 (151)
114 cd08378 C2B_MCTP_PRT_plant C2 99.6 7.4E-16 1.6E-20 131.4 10.1 99 419-524 1-100 (121)
115 cd08384 C2B_Rabphilin_Doc2 C2 99.6 7E-16 1.5E-20 134.3 9.9 109 255-365 8-120 (133)
116 cd08675 C2B_RasGAP C2 domain s 99.6 1.3E-15 2.8E-20 132.8 11.2 106 262-368 1-122 (137)
117 cd08375 C2_Intersectin C2 doma 99.6 2.1E-15 4.6E-20 131.2 12.3 92 415-511 12-106 (136)
118 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.6E-15 3.5E-20 132.1 11.3 103 380-511 1-112 (134)
119 cd08688 C2_KIAA0528-like C2 do 99.6 1.3E-15 2.9E-20 127.7 10.2 100 420-524 1-106 (110)
120 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.1E-15 2.5E-20 133.4 10.1 108 255-364 10-121 (136)
121 cd08692 C2B_Tac2-N C2 domain s 99.6 1.5E-15 3.3E-20 129.6 10.5 108 255-363 9-120 (135)
122 cd04041 C2A_fungal C2 domain f 99.6 2.4E-15 5.2E-20 126.4 11.3 89 418-510 1-98 (111)
123 cd08408 C2B_Synaptotagmin-14_1 99.6 1.7E-15 3.6E-20 132.1 10.6 110 254-364 9-123 (138)
124 cd04048 C2A_Copine C2 domain f 99.6 2.4E-15 5.2E-20 128.3 11.3 99 266-364 6-112 (120)
125 cd08681 C2_fungal_Inn1p-like C 99.6 1.8E-15 3.8E-20 128.9 10.5 96 418-523 1-100 (118)
126 cd04021 C2_E3_ubiquitin_ligase 99.6 5.9E-15 1.3E-19 126.7 13.7 118 260-386 2-124 (125)
127 cd08686 C2_ABR C2 domain in th 99.6 4E-15 8.7E-20 123.5 12.0 83 262-351 1-92 (118)
128 cd08402 C2B_Synaptotagmin-1 C2 99.6 8.1E-16 1.8E-20 134.4 8.4 108 255-364 10-121 (136)
129 cd04011 C2B_Ferlin C2 domain s 99.6 1.7E-15 3.6E-20 127.5 9.9 101 417-523 3-106 (111)
130 cd08384 C2B_Rabphilin_Doc2 C2 99.6 2.3E-15 5.1E-20 131.0 11.1 89 416-508 11-108 (133)
131 cd08404 C2B_Synaptotagmin-4 C2 99.6 4.4E-16 9.5E-21 136.0 6.5 107 256-364 11-121 (136)
132 cd04011 C2B_Ferlin C2 domain s 99.6 3.1E-15 6.7E-20 125.8 11.3 98 260-364 4-108 (111)
133 cd08376 C2B_MCTP_PRT C2 domain 99.6 3E-15 6.5E-20 127.0 11.2 89 419-512 1-92 (116)
134 cd04052 C2B_Tricalbin-like C2 99.6 2.4E-15 5.3E-20 126.3 10.4 102 277-391 9-111 (111)
135 cd08410 C2B_Synaptotagmin-17 C 99.6 2.5E-15 5.4E-20 130.9 10.7 98 255-352 9-110 (135)
136 cd04035 C2A_Rabphilin_Doc2 C2 99.6 3.7E-15 8.1E-20 127.8 11.6 108 255-363 10-122 (123)
137 cd04024 C2A_Synaptotagmin-like 99.6 3.7E-15 8E-20 128.8 11.6 89 418-511 1-94 (128)
138 cd04022 C2A_MCTP_PRT_plant C2 99.6 2.2E-15 4.7E-20 130.0 9.9 88 419-510 1-94 (127)
139 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.8E-15 4E-20 131.8 9.4 108 255-364 9-120 (134)
140 cd08390 C2A_Synaptotagmin-15-1 99.6 5.2E-15 1.1E-19 127.0 11.8 104 380-512 1-112 (123)
141 cd04010 C2B_RasA3 C2 domain se 99.6 2.3E-15 5E-20 132.2 9.6 99 419-524 1-119 (148)
142 cd04038 C2_ArfGAP C2 domain pr 99.6 5.5E-15 1.2E-19 129.5 11.8 90 418-513 2-93 (145)
143 cd04013 C2_SynGAP_like C2 doma 99.6 1.4E-14 3E-19 126.1 14.0 127 257-391 8-141 (146)
144 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 6.1E-15 1.3E-19 126.5 11.6 88 419-511 1-91 (123)
145 cd08391 C2A_C2C_Synaptotagmin_ 99.6 6.6E-15 1.4E-19 125.9 10.8 88 418-511 1-97 (121)
146 cd04026 C2_PKC_alpha_gamma C2 99.6 1.2E-14 2.7E-19 126.1 12.6 109 379-523 1-117 (131)
147 cd08400 C2_Ras_p21A1 C2 domain 99.6 1E-14 2.2E-19 125.4 11.9 90 417-512 3-93 (126)
148 cd08409 C2B_Synaptotagmin-15 C 99.6 1.5E-15 3.3E-20 132.4 6.7 110 255-365 10-123 (137)
149 cd04045 C2C_Tricalbin-like C2 99.6 1.4E-14 3E-19 123.4 11.7 96 418-524 1-100 (120)
150 cd04042 C2A_MCTP_PRT C2 domain 99.6 1.3E-14 2.8E-19 124.0 11.5 88 419-512 1-92 (121)
151 cd04026 C2_PKC_alpha_gamma C2 99.6 1.4E-14 3E-19 125.7 11.1 105 260-365 13-120 (131)
152 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 1.8E-14 3.8E-19 122.9 10.9 86 420-511 2-92 (121)
153 cd00276 C2B_Synaptotagmin C2 d 99.6 1.8E-14 4E-19 125.5 11.3 100 380-508 1-109 (134)
154 cd04047 C2B_Copine C2 domain s 99.6 1.8E-14 3.9E-19 121.0 10.7 96 264-360 4-106 (110)
155 cd08383 C2A_RasGAP C2 domain ( 99.6 4.8E-14 1E-18 119.8 13.4 114 262-388 2-117 (117)
156 cd00276 C2B_Synaptotagmin C2 d 99.6 3.9E-15 8.6E-20 129.7 6.8 108 256-365 10-121 (134)
157 cd04036 C2_cPLA2 C2 domain pre 99.6 1.4E-14 3E-19 123.4 10.0 88 419-512 1-94 (119)
158 cd08377 C2C_MCTP_PRT C2 domain 99.6 2.5E-14 5.4E-19 121.9 11.6 91 418-514 1-94 (119)
159 KOG0696 Serine/threonine prote 99.6 2.2E-15 4.8E-20 146.4 4.4 106 258-364 178-286 (683)
160 cd00275 C2_PLC_like C2 domain 99.6 9.1E-14 2E-18 120.1 14.2 119 261-388 3-127 (128)
161 cd04033 C2_NEDD4_NEDD4L C2 dom 99.5 4.4E-14 9.5E-19 123.0 11.2 99 419-523 1-111 (133)
162 cd08678 C2_C21orf25-like C2 do 99.5 4.4E-14 9.6E-19 121.6 10.9 87 420-512 1-90 (126)
163 cd04014 C2_PKC_epsilon C2 doma 99.5 5.5E-14 1.2E-18 122.1 11.5 88 417-511 3-104 (132)
164 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.3E-13 2.7E-18 118.3 13.0 104 379-512 1-114 (123)
165 cd04037 C2E_Ferlin C2 domain f 99.5 8.2E-14 1.8E-18 119.4 11.6 88 419-511 1-93 (124)
166 cd04017 C2D_Ferlin C2 domain f 99.5 8.6E-14 1.9E-18 121.3 11.8 100 419-523 2-113 (135)
167 cd04046 C2_Calpain C2 domain p 99.5 9.8E-14 2.1E-18 119.4 11.7 86 417-509 2-90 (126)
168 cd08382 C2_Smurf-like C2 domai 99.5 7.5E-14 1.6E-18 119.6 10.9 86 420-512 2-93 (123)
169 KOG0696 Serine/threonine prote 99.5 1.5E-14 3.2E-19 140.7 7.1 105 376-511 165-277 (683)
170 cd04044 C2A_Tricalbin-like C2 99.5 9.6E-14 2.1E-18 119.2 11.1 89 418-512 2-96 (124)
171 cd04049 C2_putative_Elicitor-r 99.5 1.2E-13 2.6E-18 118.6 11.6 90 418-511 1-96 (124)
172 cd08686 C2_ABR C2 domain in th 99.5 1.1E-13 2.3E-18 115.0 10.5 85 420-509 1-93 (118)
173 PF00168 C2: C2 domain; Inter 99.5 8.2E-14 1.8E-18 110.8 8.9 85 262-346 1-85 (85)
174 cd04054 C2A_Rasal1_RasA4 C2 do 99.5 2E-13 4.3E-18 116.6 11.4 85 420-510 2-90 (121)
175 PLN03200 cellulose synthase-in 99.5 1E-13 2.2E-18 161.0 11.7 123 255-390 1975-2101(2102)
176 cd04043 C2_Munc13_fungal C2 do 99.5 2.1E-13 4.5E-18 117.5 10.8 88 419-511 2-95 (126)
177 cd04027 C2B_Munc13 C2 domain s 99.5 2.6E-13 5.6E-18 116.9 11.3 90 419-510 2-101 (127)
178 cd08373 C2A_Ferlin C2 domain f 99.5 2.4E-13 5.3E-18 117.2 10.9 85 424-512 2-88 (127)
179 cd04015 C2_plant_PLD C2 domain 99.5 2.4E-13 5.2E-18 121.3 11.1 89 417-512 6-128 (158)
180 cd08675 C2B_RasGAP C2 domain s 99.5 2E-13 4.3E-18 119.0 9.8 87 420-510 1-107 (137)
181 cd08676 C2A_Munc13-like C2 dom 99.5 3.9E-13 8.5E-18 118.5 10.9 96 415-524 25-152 (153)
182 cd04051 C2_SRC2_like C2 domain 99.4 4.3E-13 9.3E-18 115.4 9.1 91 419-513 1-99 (125)
183 cd04021 C2_E3_ubiquitin_ligase 99.4 1.5E-12 3.3E-17 111.7 11.2 87 419-512 3-92 (125)
184 cd04040 C2D_Tricalbin-like C2 99.4 1.5E-12 3.2E-17 110.2 10.7 88 420-512 1-92 (115)
185 cd08691 C2_NEDL1-like C2 domai 99.4 2.2E-12 4.7E-17 111.8 11.2 89 420-512 3-107 (137)
186 cd08690 C2_Freud-1 C2 domain f 99.4 2.4E-12 5.1E-17 113.3 11.1 90 420-512 4-110 (155)
187 cd08383 C2A_RasGAP C2 domain ( 99.4 2.6E-12 5.6E-17 109.1 10.3 85 420-509 2-88 (117)
188 cd04013 C2_SynGAP_like C2 doma 99.4 3.4E-12 7.3E-17 111.2 10.5 99 417-523 10-109 (146)
189 cd04048 C2A_Copine C2 domain f 99.4 2.3E-12 4.9E-17 110.0 9.2 89 423-512 5-103 (120)
190 KOG1011 Neurotransmitter relea 99.4 1.3E-12 2.8E-17 132.3 8.9 124 255-389 290-424 (1283)
191 KOG1028 Ca2+-dependent phospho 99.4 4.5E-12 9.8E-17 130.3 11.9 108 376-512 150-264 (421)
192 PF00168 C2: C2 domain; Inter 99.4 3.4E-12 7.4E-17 101.3 8.7 79 420-503 1-85 (85)
193 PLN03200 cellulose synthase-in 99.3 1.6E-12 3.4E-17 151.3 9.1 91 416-511 1978-2070(2102)
194 cd00275 C2_PLC_like C2 domain 99.3 7.4E-12 1.6E-16 108.1 10.8 92 419-516 3-106 (128)
195 cd04047 C2B_Copine C2 domain s 99.3 4.9E-12 1.1E-16 106.1 9.3 84 422-510 4-99 (110)
196 cd08374 C2F_Ferlin C2 domain s 99.3 1.3E-11 2.8E-16 105.5 11.5 95 262-356 2-125 (133)
197 cd04052 C2B_Tricalbin-like C2 99.3 4.4E-12 9.6E-17 106.5 8.4 72 434-511 11-83 (111)
198 smart00239 C2 Protein kinase C 99.3 2.2E-11 4.8E-16 99.6 10.6 96 261-356 1-96 (101)
199 cd08374 C2F_Ferlin C2 domain s 99.3 3.1E-11 6.8E-16 103.1 9.8 90 420-513 2-125 (133)
200 cd00030 C2 C2 domain. The C2 d 99.2 6.7E-11 1.4E-15 96.4 10.5 99 262-362 1-100 (102)
201 PLN03008 Phospholipase D delta 99.2 6.6E-11 1.4E-15 126.7 9.7 73 434-513 75-148 (868)
202 PF10296 DUF2404: Putative int 99.2 1.7E-10 3.8E-15 92.5 9.4 85 75-160 1-89 (91)
203 PLN02223 phosphoinositide phos 99.1 2.4E-10 5.2E-15 117.8 11.5 98 259-356 408-512 (537)
204 KOG1326 Membrane-associated pr 99.1 1.1E-10 2.4E-15 124.4 9.3 92 260-352 613-704 (1105)
205 smart00239 C2 Protein kinase C 99.1 4.7E-10 1E-14 91.6 11.1 90 420-514 2-97 (101)
206 PLN02270 phospholipase D alpha 99.1 1E-09 2.2E-14 117.7 15.6 129 258-394 6-153 (808)
207 PLN02952 phosphoinositide phos 99.1 2.1E-09 4.5E-14 113.3 14.1 103 259-364 469-579 (599)
208 cd00030 C2 C2 domain. The C2 d 99.0 2.4E-09 5.2E-14 87.1 10.8 86 420-510 1-90 (102)
209 PLN02223 phosphoinositide phos 99.0 2.9E-09 6.3E-14 109.9 10.8 98 416-518 407-517 (537)
210 KOG1328 Synaptic vesicle prote 99.0 2.8E-10 6.2E-15 117.2 3.1 133 254-392 108-304 (1103)
211 PLN02230 phosphoinositide phos 98.9 3E-09 6.4E-14 111.9 10.3 99 259-357 468-574 (598)
212 KOG0169 Phosphoinositide-speci 98.9 5.9E-09 1.3E-13 109.6 11.8 98 261-358 617-721 (746)
213 KOG1011 Neurotransmitter relea 98.9 1.9E-09 4.1E-14 109.8 6.6 99 410-510 287-395 (1283)
214 PLN02222 phosphoinositide phos 98.9 9E-09 1.9E-13 108.2 10.9 98 259-356 451-556 (581)
215 PLN02228 Phosphoinositide phos 98.9 2.5E-08 5.4E-13 104.6 13.9 125 259-391 430-563 (567)
216 cd08689 C2_fungal_Pkc1p C2 dom 98.9 6.4E-09 1.4E-13 83.4 6.9 86 262-355 1-89 (109)
217 PLN02952 phosphoinositide phos 98.8 2.3E-08 4.9E-13 105.6 10.9 97 417-518 469-579 (599)
218 PLN02222 phosphoinositide phos 98.8 3.3E-08 7.1E-13 104.0 11.0 97 417-518 451-561 (581)
219 KOG1328 Synaptic vesicle prote 98.8 2.3E-09 5E-14 110.7 2.2 98 257-354 944-1049(1103)
220 PLN02230 phosphoinositide phos 98.8 2.5E-08 5.4E-13 105.1 9.7 98 416-518 467-578 (598)
221 KOG1327 Copine [Signal transdu 98.7 1.3E-07 2.8E-12 96.9 13.6 177 297-510 43-235 (529)
222 cd08689 C2_fungal_Pkc1p C2 dom 98.7 5.4E-08 1.2E-12 78.1 7.9 82 420-512 1-89 (109)
223 KOG1264 Phospholipase C [Lipid 98.7 5.7E-08 1.2E-12 101.7 9.5 126 260-394 1065-1194(1267)
224 KOG0905 Phosphoinositide 3-kin 98.7 2E-08 4.4E-13 108.8 6.4 114 376-524 1509-1632(1639)
225 KOG0169 Phosphoinositide-speci 98.6 9.5E-08 2.1E-12 100.7 9.1 94 419-517 617-723 (746)
226 KOG1031 Predicted Ca2+-depende 98.6 7.4E-08 1.6E-12 97.4 7.8 119 259-387 2-134 (1169)
227 KOG2059 Ras GTPase-activating 98.6 6.2E-08 1.4E-12 100.5 7.3 123 266-389 137-276 (800)
228 PLN02228 Phosphoinositide phos 98.6 1.6E-07 3.5E-12 98.6 9.8 96 417-517 430-540 (567)
229 PLN02352 phospholipase D epsil 98.5 5.6E-07 1.2E-11 96.8 11.9 122 257-394 7-135 (758)
230 KOG1326 Membrane-associated pr 98.5 6.8E-08 1.5E-12 103.7 4.3 230 259-505 205-454 (1105)
231 PLN02270 phospholipase D alpha 98.5 5E-07 1.1E-11 97.4 10.1 96 417-523 7-125 (808)
232 KOG1264 Phospholipase C [Lipid 98.5 5.6E-07 1.2E-11 94.5 9.9 100 418-522 1065-1173(1267)
233 KOG1031 Predicted Ca2+-depende 98.5 1.9E-07 4.1E-12 94.5 6.2 91 417-511 2-98 (1169)
234 KOG0905 Phosphoinositide 3-kin 98.2 8.9E-07 1.9E-11 96.5 4.4 107 258-364 1522-1633(1639)
235 KOG1013 Synaptic vesicle prote 98.1 3.2E-06 6.9E-11 80.8 5.7 98 254-351 227-328 (362)
236 cd08684 C2A_Tac2-N C2 domain f 98.1 3.6E-06 7.9E-11 64.6 3.4 83 421-509 2-92 (103)
237 cd08684 C2A_Tac2-N C2 domain f 98.0 3.7E-06 8E-11 64.6 2.9 92 263-356 2-96 (103)
238 KOG3532 Predicted protein kina 97.9 5.1E-05 1.1E-09 78.8 9.4 226 58-291 81-358 (1051)
239 PLN02964 phosphatidylserine de 97.7 3.8E-05 8.2E-10 82.3 5.6 92 255-356 49-141 (644)
240 PF12416 DUF3668: Cep120 prote 97.7 0.0056 1.2E-07 61.0 20.3 230 262-510 2-294 (340)
241 KOG1327 Copine [Signal transdu 97.7 5.2E-05 1.1E-09 78.2 6.1 87 267-354 143-236 (529)
242 PLN02964 phosphatidylserine de 97.6 9.5E-05 2.1E-09 79.4 7.0 88 416-512 52-140 (644)
243 cd08683 C2_C2cd3 C2 domain fou 97.5 9.3E-05 2E-09 61.6 4.1 94 262-355 1-133 (143)
244 cd08683 C2_C2cd3 C2 domain fou 97.5 0.00026 5.7E-09 59.0 6.7 101 420-523 1-141 (143)
245 PLN02352 phospholipase D epsil 97.4 0.00052 1.1E-08 74.4 8.3 85 416-513 8-101 (758)
246 KOG2060 Rab3 effector RIM1 and 97.3 0.00028 6.1E-09 68.9 4.5 90 416-510 267-365 (405)
247 KOG2060 Rab3 effector RIM1 and 97.2 0.00024 5.2E-09 69.4 3.3 109 256-365 265-378 (405)
248 cd08398 C2_PI3K_class_I_alpha 96.8 0.011 2.4E-07 52.5 9.9 92 418-510 8-107 (158)
249 KOG3837 Uncharacterized conser 96.8 0.0014 2.9E-08 64.9 4.2 125 258-389 365-503 (523)
250 cd08398 C2_PI3K_class_I_alpha 96.5 0.066 1.4E-06 47.5 12.6 89 260-352 8-106 (158)
251 cd08693 C2_PI3K_class_I_beta_d 96.3 0.028 6.2E-07 50.8 9.4 95 418-512 8-123 (173)
252 PF12416 DUF3668: Cep120 prote 96.1 0.027 5.8E-07 56.2 9.1 102 420-524 2-110 (340)
253 PF10358 NT-C2: N-terminal C2 96.0 0.27 5.9E-06 42.8 14.2 124 258-393 5-139 (143)
254 PF15627 CEP76-C2: CEP76 C2 do 95.7 0.2 4.4E-06 43.9 11.5 128 257-391 6-152 (156)
255 KOG1452 Predicted Rho GTPase-a 95.7 0.024 5.1E-07 54.3 6.0 119 255-389 46-167 (442)
256 KOG1265 Phospholipase C [Lipid 95.4 0.026 5.7E-07 61.1 5.9 93 416-517 701-802 (1189)
257 cd08380 C2_PI3K_like C2 domain 95.3 0.089 1.9E-06 46.7 8.4 93 260-353 8-108 (156)
258 cd08693 C2_PI3K_class_I_beta_d 95.2 0.084 1.8E-06 47.7 7.9 91 260-352 8-120 (173)
259 cd08380 C2_PI3K_like C2 domain 95.1 0.13 2.9E-06 45.6 8.7 91 418-510 8-108 (156)
260 cd08687 C2_PKN-like C2 domain 94.9 0.25 5.5E-06 38.8 8.5 85 280-388 8-92 (98)
261 KOG1265 Phospholipase C [Lipid 94.8 0.057 1.2E-06 58.6 6.3 90 259-356 702-798 (1189)
262 cd04012 C2A_PI3K_class_II C2 d 94.3 0.17 3.7E-06 45.7 7.5 94 259-352 7-119 (171)
263 KOG3837 Uncharacterized conser 94.2 0.028 6.2E-07 55.9 2.2 94 416-512 365-476 (523)
264 cd08397 C2_PI3K_class_III C2 d 94.1 0.15 3.3E-06 45.3 6.5 71 435-509 29-107 (159)
265 cd08397 C2_PI3K_class_III C2 d 94.0 0.17 3.7E-06 45.0 6.7 74 279-352 28-107 (159)
266 cd08399 C2_PI3K_class_I_gamma 93.9 0.34 7.4E-06 43.8 8.5 73 261-334 11-88 (178)
267 cd08399 C2_PI3K_class_I_gamma 93.6 0.58 1.3E-05 42.3 9.4 93 419-511 11-124 (178)
268 PF15627 CEP76-C2: CEP76 C2 do 93.2 0.65 1.4E-05 40.8 8.8 89 416-508 7-114 (156)
269 cd04012 C2A_PI3K_class_II C2 d 92.4 0.81 1.7E-05 41.3 8.7 93 417-509 7-119 (171)
270 PF00792 PI3K_C2: Phosphoinosi 92.3 0.62 1.3E-05 40.6 7.6 55 298-352 23-85 (142)
271 PF00792 PI3K_C2: Phosphoinosi 91.9 0.7 1.5E-05 40.3 7.4 56 450-509 23-85 (142)
272 cd08695 C2_Dock-B C2 domains f 91.4 1.9 4.2E-05 39.3 9.8 56 295-350 53-112 (189)
273 PF15625 CC2D2AN-C2: CC2D2A N- 91.3 3 6.5E-05 37.5 11.0 72 280-355 36-109 (168)
274 cd08694 C2_Dock-A C2 domains f 90.0 3 6.6E-05 38.1 9.8 56 295-350 53-114 (196)
275 PF14429 DOCK-C2: C2 domain in 87.5 3.6 7.7E-05 37.6 8.7 56 296-351 60-120 (184)
276 smart00142 PI3K_C2 Phosphoinos 86.7 3 6.4E-05 33.9 6.9 73 262-334 13-91 (100)
277 PF14429 DOCK-C2: C2 domain in 83.8 3.4 7.4E-05 37.7 6.7 59 449-508 61-120 (184)
278 smart00142 PI3K_C2 Phosphoinos 83.3 7.2 0.00016 31.6 7.7 69 420-488 13-92 (100)
279 cd08695 C2_Dock-B C2 domains f 80.2 6.2 0.00014 36.0 6.8 58 449-508 55-113 (189)
280 PF15625 CC2D2AN-C2: CC2D2A N- 79.8 12 0.00026 33.6 8.5 68 435-509 36-106 (168)
281 PF10358 NT-C2: N-terminal C2 77.2 21 0.00045 30.8 9.2 89 418-511 7-106 (143)
282 cd08687 C2_PKN-like C2 domain 76.1 18 0.00039 28.7 7.2 49 436-488 9-58 (98)
283 PF11618 DUF3250: Protein of u 75.7 12 0.00026 30.8 6.6 84 297-389 13-105 (107)
284 cd08697 C2_Dock-D C2 domains f 74.4 34 0.00073 31.2 9.8 56 296-351 57-123 (185)
285 cd08679 C2_DOCK180_related C2 73.6 9.2 0.0002 34.7 6.1 54 297-351 55-115 (178)
286 cd08694 C2_Dock-A C2 domains f 73.3 13 0.00028 34.1 6.8 61 448-508 54-115 (196)
287 PF07162 B9-C2: Ciliary basal 72.0 48 0.001 29.6 10.4 82 420-508 4-103 (168)
288 KOG1329 Phospholipase D1 [Lipi 71.7 9 0.0002 42.7 6.4 107 281-394 138-245 (887)
289 cd08696 C2_Dock-C C2 domains f 68.2 14 0.00031 33.4 6.0 56 296-351 55-118 (179)
290 KOG1452 Predicted Rho GTPase-a 66.4 12 0.00027 36.4 5.4 71 414-488 47-124 (442)
291 KOG2238 Uncharacterized conser 65.5 2.2 4.8E-05 46.5 0.2 91 69-160 334-428 (795)
292 KOG4269 Rac GTPase-activating 64.4 6.6 0.00014 43.5 3.5 74 254-334 753-828 (1112)
293 KOG4269 Rac GTPase-activating 63.6 4.2 9.1E-05 45.0 1.9 101 414-525 755-866 (1112)
294 cd08696 C2_Dock-C C2 domains f 62.6 35 0.00075 31.0 7.3 61 448-508 55-118 (179)
295 KOG4092 Mitochondrial F1F0-ATP 62.1 4.7 0.0001 31.7 1.4 54 47-100 27-80 (108)
296 cd08679 C2_DOCK180_related C2 60.3 28 0.0006 31.5 6.4 59 450-508 55-115 (178)
297 cd08697 C2_Dock-D C2 domains f 54.1 62 0.0013 29.5 7.5 61 448-508 57-123 (185)
298 KOG0694 Serine/threonine prote 49.4 4.4 9.6E-05 43.7 -0.7 68 280-351 27-94 (694)
299 PF08693 SKG6: Transmembrane a 48.4 13 0.00029 24.4 1.6 15 20-34 25-39 (40)
300 PTZ00447 apical membrane antig 47.4 75 0.0016 31.6 7.2 97 416-523 56-154 (508)
301 KOG0904 Phosphatidylinositol 3 46.2 67 0.0015 36.1 7.4 101 417-517 342-464 (1076)
302 PRK11874 petL cytochrome b6-f 45.5 29 0.00062 21.3 2.6 24 1-25 1-24 (30)
303 PF06219 DUF1005: Protein of u 44.2 3.8E+02 0.0083 27.7 12.5 63 324-390 95-168 (460)
304 PRK11677 hypothetical protein; 43.1 19 0.00041 30.9 2.2 21 5-25 2-22 (134)
305 PF10206 WRW: Mitochondrial F1 40.3 21 0.00046 29.0 2.0 36 55-90 35-70 (104)
306 COG3105 Uncharacterized protei 37.1 30 0.00065 29.1 2.4 21 3-23 5-25 (138)
307 PF15361 RIC3: Resistance to i 36.9 5.5 0.00012 35.0 -2.0 24 2-32 80-103 (152)
308 KOG4027 Uncharacterized conser 36.6 1.6E+02 0.0034 26.0 6.7 71 435-509 25-111 (187)
309 KOG2419 Phosphatidylserine dec 36.1 6.7 0.00015 41.8 -1.8 59 258-320 278-340 (975)
310 KOG4027 Uncharacterized conser 34.5 2.6E+02 0.0056 24.7 7.7 48 304-351 59-110 (187)
311 KOG1329 Phospholipase D1 [Lipi 33.1 29 0.00062 39.0 2.3 73 434-512 136-210 (887)
312 KOG0904 Phosphatidylinositol 3 32.2 1.9E+02 0.004 32.8 8.0 71 260-333 343-421 (1076)
313 PF04478 Mid2: Mid2 like cell 31.2 32 0.00069 30.0 1.8 10 25-34 68-77 (154)
314 PF07162 B9-C2: Ciliary basal 31.1 3.8E+02 0.0083 23.8 10.3 81 263-349 5-101 (168)
315 PF11618 DUF3250: Protein of u 30.4 78 0.0017 26.0 3.9 66 439-510 2-74 (107)
316 PF00558 Vpu: Vpu protein; In 29.8 35 0.00077 26.4 1.6 27 6-32 5-31 (81)
317 PF14356 DUF4403: Domain of un 29.2 5.7E+02 0.012 26.7 11.2 87 120-241 280-366 (427)
318 KOG0694 Serine/threonine prote 28.4 50 0.0011 36.0 3.0 50 435-487 27-77 (694)
319 KOG2419 Phosphatidylserine dec 27.2 15 0.00032 39.4 -1.1 72 415-487 277-355 (975)
320 PTZ00447 apical membrane antig 26.0 6.1E+02 0.013 25.5 9.6 111 259-387 57-171 (508)
321 PF10409 PTEN_C2: C2 domain of 25.6 3.7E+02 0.008 22.6 7.6 74 433-510 22-98 (134)
322 COG3771 Predicted membrane pro 21.9 65 0.0014 25.1 1.8 18 5-23 42-59 (97)
323 PHA00024 IX minor coat protein 21.0 1E+02 0.0022 19.3 2.2 12 3-14 4-15 (33)
324 COG3887 Predicted signaling pr 20.4 25 0.00054 37.6 -0.9 41 43-83 68-109 (655)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=1.4e-62 Score=521.43 Aligned_cols=469 Identities=26% Similarity=0.494 Sum_probs=380.6
Q ss_pred cchhhhHHhhhhhHHHHHHHHHhheeeeEEeccCCCCcccccccccCHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHH
Q 009797 2 GVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELM 81 (525)
Q Consensus 2 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~~~E~~~WlN~~l~~~ 81 (525)
|++||++|++||+++.++.+++.. .++|.+..++-++-+|.+.. ++.-++-+. .|+||+||||.+|+++
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~-~~vY~~~~~rv~rnird~v~--~~~~~ek~~--------nd~ESveWLNtfL~Kf 233 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVT-MYVYRTCIKRVRRNIRDLVQ--QELSEEKLE--------NDYESVEWLNTFLQKF 233 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHhhh--------cchhHHHHHHHHHHhh
Confidence 689999999999977765544332 23344422222223343321 111122221 5999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCceeeeeEEEeEEeCCCCCCeEeeeEEEec-CCCeEEEEeeeeEe-----------
Q 009797 82 WPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEPCLKWA----------- 149 (525)
Q Consensus 82 W~~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~le~~~~~~----------- 149 (525)
||.++|.+++.|.+.+|+.|+++.|+| |+++++.+||||++||||.+||.|+. ..+.+.||+++++.
T Consensus 234 W~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~~~ 312 (1227)
T COG5038 234 WPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATS 312 (1227)
T ss_pred eeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhhHH
Confidence 999999999999999999999999999 99999999999999999999999986 66889999999996
Q ss_pred ----CCCcEEEEEEE---cc-eEEEEEEEeEEEEEEEEEEEeecCCCCCeeeEEEEEcCCCCeEEEEEEEcC-----cCc
Q 009797 150 ----ANPNVTIGVKA---FG-LKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-----ADL 216 (525)
Q Consensus 150 ----~~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g-----~~~ 216 (525)
-+++|.|.++. ++ +++||.|+|+.|.|++||+++ |++.+|+++.+.++|||.|.+||.++|+| .|+
T Consensus 313 ~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~g~dI 391 (1227)
T COG5038 313 ARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVDI 391 (1227)
T ss_pred HhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCccceeE
Confidence 25678888865 45 789999999999999999998 99999999999999999999999999987 478
Q ss_pred ccCcchHHHHHHHHHHHHhhcccCCccccccccCCCcc-CCCceeEEEEEEEeccCCcccC--cCCCCCcEEEEEEcCCc
Q 009797 217 MSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKD--LLGASDPYVKLKITEDK 293 (525)
Q Consensus 217 ~~iP~l~~~i~~~i~~~l~~~~v~P~~~~~~i~~~~~~-~~~~~g~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~~~ 293 (525)
+.+|||.+||+++|...+++|+++|+.+++++...... ...+.|+|.|+|.+|++|...+ ..+..|||+++...+..
T Consensus 392 ~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~ 471 (1227)
T COG5038 392 FAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRV 471 (1227)
T ss_pred ecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecccc
Confidence 99999999999999999999999999999988754443 7889999999999999999988 57899999999976544
Q ss_pred CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeE-EEecccccccCC
Q 009797 294 LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK-TLDLLKNMDLND 372 (525)
Q Consensus 294 ~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~-~~~l~~~~~~~~ 372 (525)
. .||++++++.||+|||+|++.+... .+.|.++|||.+...+|+.+|.+.++|..|.....+.. ...+.
T Consensus 472 ~--gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~------- 541 (1227)
T COG5038 472 I--GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL------- 541 (1227)
T ss_pred C--CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-------
Confidence 3 5999999999999999999999764 68999999999999999999999999999987764432 22222
Q ss_pred CCCCceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC--CCCCcEEEEEECCeEE-
Q 009797 373 GQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRGEER- 449 (525)
Q Consensus 373 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~~~~- 449 (525)
.+.+..|+|+.+++|+|..++........ ..+ ....+|++.++++++++|... ....-|++++++++..
T Consensus 542 -~~~k~vGrL~yDl~ffp~~e~k~~~~~s~-----e~~--ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~ 613 (1227)
T COG5038 542 -RNTKNVGRLTYDLRFFPVIEDKKELKGSV-----EPL--EDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVY 613 (1227)
T ss_pred -ccCccceEEEEeeeeecccCCcccccccc-----CCc--ccCCcceeEEEeeccccccCccccccceeEEEEecceEEe
Confidence 24788999999999999877643322110 001 123579999999999999763 2233448999988765
Q ss_pred EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
.|+..+.+.+|.||+.++-.+.+. .+..+.+.++|... .+.+|....+|.++
T Consensus 614 st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~-------g~~i~~~~~~l~~l 665 (1227)
T COG5038 614 STGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQS-------GKVIATEGSTLPDL 665 (1227)
T ss_pred ccceeeeccCCceeeecceEeccC-cceeEEEEeccccc-------CceeccccccchHh
Confidence 568999999999999999999875 55689999988842 45666666666554
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-31 Score=272.76 Aligned_cols=222 Identities=29% Similarity=0.450 Sum_probs=192.2
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEEE
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAVY 331 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~ 331 (525)
.++.....|+|+|++|++|+.++..|.+||||++++.+++..+.+|++.++|+||.|||+|.|.+.. .....|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 4566788999999999999999977889999999999888777899999999999999999999653 34789999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCCCCCCcccccccccCCCC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE 411 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~ 411 (525)
|+|+++++++||++.++|..+........|.++....... ....|+|.++++|.|
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p--------------------- 295 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLP--------------------- 295 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeec---------------------
Confidence 9999999999999999999998887777888876543222 222389999999998
Q ss_pred CCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCC-eEEEE
Q 009797 412 NTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVE 482 (525)
Q Consensus 412 ~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~ 482 (525)
..|.|+|.|.+|+||... +.+||||++++.. +++||++++++.||+|||+|.|.|+.....+ ++.|+
T Consensus 296 ----~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~ 371 (421)
T KOG1028|consen 296 ----TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELT 371 (421)
T ss_pred ----CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEE
Confidence 489999999999999863 5789999999854 2459999999999999999999998654544 89999
Q ss_pred EEEcccCccCCCCCccceEEEEEccc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
|||++. +++.++||++.++...
T Consensus 372 V~d~d~----~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDT----LGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEccc----ccccceeeEEEecCCC
Confidence 999987 7888899999999987
No 3
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.87 E-value=6.1e-22 Score=201.81 Aligned_cols=226 Identities=20% Similarity=0.268 Sum_probs=177.8
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
..|.|+|.+|+||+..+..|.+||||.|.++.... .+|.++.+++.|.|.|+|+|.+.. .-+.|.|-|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999997664 799999999999999999999975 3578999999999 9999
Q ss_pred CccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcce
Q 009797 340 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGL 419 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 419 (525)
+.||.+.+.-.+|....+...|+.|.+ .+ .+....|+|++++.+.+.... .-
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD----~dsEVQG~v~l~l~~~e~~~~-----------------------~~ 132 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VD----PDSEVQGKVHLELALTEAIQS-----------------------SG 132 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cC----CChhhceeEEEEEEeccccCC-----------------------Cc
Confidence 999999999999988777777887643 22 236889999999999764221 11
Q ss_pred EEEEEEeeecCCC--CCCCCcEEEEEECCeE----EEeeeecCCCCCcccceEEEEecCC-----------C---CCCeE
Q 009797 420 LVVIVHEAQDVEG--KHHTNPYARILFRGEE----RKTKHVKKNRDPRWEEEFQFMLEEP-----------P---TNDRL 479 (525)
Q Consensus 420 L~V~v~~a~~L~~--~~~~dPyv~v~l~~~~----~kT~v~~~t~nP~wne~f~f~v~~~-----------~---~~~~l 479 (525)
+...+.+++++-+ .+.+|||+++...|.. ++|+++++|.+|.|+|.|.|.+... . ..-.|
T Consensus 133 ~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 133 LVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred chhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 2233344445433 3579999999997754 4999999999999999999998753 0 11267
Q ss_pred EEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 480 HVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 480 ~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
.+++|+.... ..++.++|.+.++++... .-.....||+
T Consensus 213 rv~lW~~~~~---~~~~~FlGevrv~v~~~~----~~s~p~~W~~ 250 (800)
T KOG2059|consen 213 RVDLWNDLNL---VINDVFLGEVRVPVDVLR----QKSSPAAWYY 250 (800)
T ss_pred EEeeccchhh---hhhhhhceeEEeehhhhh----hccCccceEE
Confidence 8888986432 456999999999999854 2334455663
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=5.5e-21 Score=161.79 Aligned_cols=119 Identities=21% Similarity=0.369 Sum_probs=100.9
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCC-CCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (525)
.|.|.|+|++|++++..+ .|++||||++.+++.+ .+|+++.+ +.||+|||+|.|.+... ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~---~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAV---YETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEE---EEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998777 7999999999998765 48999865 79999999999999753 468999999999999
Q ss_pred CCCccEEEEEECc-ccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 338 KHDKMGMNVVPLK-ELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 338 ~d~~lG~~~i~L~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+|++||++.+++. .+..++....|++|... ......|+|+++++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777767888887431 123578999999987
No 5
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.84 E-value=1.4e-20 Score=156.68 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=89.8
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCCCCCCcEEEEEECC----eEEEeeeec
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRG----EERKTKHVK 455 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~----~~~kT~v~~ 455 (525)
|+|++++.|.| ..+.|.|+|++|+||+..+.+||||++++.. .+++|++++
T Consensus 1 ~~l~fsL~Y~~-------------------------~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~r 55 (118)
T cd08677 1 PKLHYSLSYDK-------------------------QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKK 55 (118)
T ss_pred CeEEEEEEEcC-------------------------cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceec
Confidence 57999999987 5889999999999999777899999999964 356999999
Q ss_pred CCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 456 KNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 456 ~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
+|.||+|||+|.|.++..... ..|.++|||.|+ ++++++||++.+++.++
T Consensus 56 ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr----fs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 56 LALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR----FSRHSTLGELRLKLADV 106 (118)
T ss_pred CCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC----CCCCceEEEEEEccccc
Confidence 999999999999999865443 489999999997 89999999999999975
No 6
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.83 E-value=7.7e-20 Score=156.48 Aligned_cols=121 Identities=29% Similarity=0.487 Sum_probs=105.8
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|+|+|++|++|+..+..|.+||||++++++.. .++|+++.++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 489999999999999988999999999997633 36999999999999999999999765 578999999999999999
Q ss_pred ccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+||++.+++.++..+...+.|++|... .+.+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 999999999999988888889887421 22467999999999865
No 7
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=5.6e-20 Score=158.49 Aligned_cols=118 Identities=27% Similarity=0.490 Sum_probs=99.9
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC-----CCCCeEEEEEEecCCC
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-----PESQAVELAVYDWEQV 336 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-----~~~~~L~i~v~d~~~~ 336 (525)
++|+|++|+||+.++..|.+||||++++++.+ ++|++++++.||+|||+|.|.+.. +....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 599999999999999999999976 3567899999999998
Q ss_pred CCCCccEEEEEECcccC--CCCCeeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 337 GKHDKMGMNVVPLKELT--PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
++|++||++.++|+++. .+.....|++|.... ....+.+|+|++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDI 125 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEe
Confidence 89999999999999987 455567788874321 12356789999987
No 8
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.82 E-value=1.7e-19 Score=153.23 Aligned_cols=115 Identities=30% Similarity=0.510 Sum_probs=102.6
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
+++|+|++|++|+..+..|.+||||++++++.. .+|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 479999999999999988999999999997644 68999999999999999999998766789999999999988999
Q ss_pred ccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
+||++.++|.++..+.....|++|. ...|+|++.++|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence 9999999999999888888898872 2369999998773
No 9
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.82 E-value=1e-19 Score=155.12 Aligned_cols=117 Identities=30% Similarity=0.443 Sum_probs=100.0
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||.|||+|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999988999999999998744 5788764 5799999999999998766788999999998766
Q ss_pred CCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 339 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
|++||++.+++.++..+.....|+++.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 8999999999999877656667777632 24689999999986
No 10
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=2e-19 Score=156.43 Aligned_cols=122 Identities=30% Similarity=0.492 Sum_probs=103.5
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
......|.|+|+|++|++|+..+..|.+||||+++++... .+|++++++.||.|||+|.|.+.++..+.|.++|||+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~ 85 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDR 85 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEEC
Confidence 3456789999999999999999988999999999997654 6999999999999999999999877678899999999
Q ss_pred CCCCCCCccEEEEEECcccCCCC-----CeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+..++|++||++.+++.++.... ....++.+ ....+|+|++++++
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 99999999999999999998622 11223322 25778999999986
No 11
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=2.6e-19 Score=152.76 Aligned_cols=116 Identities=31% Similarity=0.509 Sum_probs=101.2
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998888999999999975433457999999999999999999999766567899999999988 8999
Q ss_pred cEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 342 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
||++.++++++..+.....|+++. .+.+|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999888888888873 2458888888765
No 12
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=2e-19 Score=151.83 Aligned_cols=107 Identities=26% Similarity=0.410 Sum_probs=91.7
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcC----CcCCceeeeecCCCCCCeEeeEEEEEeeCC---CCCeEEEEEEec
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITE----DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDW 333 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~----~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~ 333 (525)
.|+|+|++|++|+..+ .|.+||||+|++.+ .+.++++|+++++|+||+|||+|.|.+... ....|.+.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999888 49999999999843 333346899999999999999999999743 346799999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEeccccc
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNM 368 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~ 368 (525)
+..+++++||++.+|++++..++....|++|.+.+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 98888999999999999999988888899885543
No 13
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.81 E-value=7.8e-20 Score=152.12 Aligned_cols=106 Identities=18% Similarity=0.328 Sum_probs=88.9
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC-CcCCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~-~~~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~ 331 (525)
+....|.|+|+|++|++|+ . .|.+||||++++.. .+..+++|+++++|+||+|||+|.|.+.. .....|.++||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4556899999999999998 3 46799999999974 34456799999999999999999999874 33678999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEe
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 363 (525)
|+|+++++++||++.++++++..+...++|.+
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred eCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 99999999999999999998865555555543
No 14
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=4.3e-19 Score=151.24 Aligned_cols=116 Identities=28% Similarity=0.412 Sum_probs=98.1
Q ss_pred EEEEEEEeccC---CcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC-
Q 009797 261 ILHVKVVKAMN---LKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV- 336 (525)
Q Consensus 261 ~L~V~v~~A~~---L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~- 336 (525)
.|+|+|++|++ |+.+|..|.+||||++++++++ .+|+++++++||+|||+|.|.+.++ ...|.++|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~---~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKW---VRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEE---eEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcc
Confidence 38999999999 8889999999999999998765 4899999999999999999999775 45899999999886
Q ss_pred -----CCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEE
Q 009797 337 -----GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVV 384 (525)
Q Consensus 337 -----~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 384 (525)
++|++||++.++++.+..+.....|++|... + +...+..|+|+.
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 3899999999999999988877888887431 1 123566777764
No 15
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=1.9e-19 Score=155.26 Aligned_cols=100 Identities=46% Similarity=0.736 Sum_probs=92.2
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (525)
...|.|+|+|.+|.+|..+|..+++||||++.+++++. +|+++++++||+|||.|.|.+.++ ...|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46899999999999999999889999999999999884 899999999999999999999987 67899999999999
Q ss_pred CCCCccEEEEEECcccCCCCCeeE
Q 009797 337 GKHDKMGMNVVPLKELTPEEPSVK 360 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~~~~~~~~ 360 (525)
+.||+||.++|++..+.......+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999987654443
No 16
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.80 E-value=7.4e-18 Score=181.44 Aligned_cols=287 Identities=22% Similarity=0.357 Sum_probs=208.1
Q ss_pred CcchHHHHHHHHHHHHhhcccCCcc-------ccc---cccC----CCc-cCCCceeEEEEEEEeccCCcccCcCCCCCc
Q 009797 219 IPGLYRFVQELIKTQVANMYLWPKT-------LEV---PILD----PSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDP 283 (525)
Q Consensus 219 iP~l~~~i~~~i~~~l~~~~v~P~~-------~~~---~i~~----~~~-~~~~~~g~L~V~v~~A~~L~~~d~~g~~dp 283 (525)
++...+=+.+.|.......++.|.+ ++. |+.. .+. ....++|.++|.|..|.+|......+++||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 4444455567777777777777766 222 4432 111 367899999999999999998777899999
Q ss_pred EEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCe---eE
Q 009797 284 YVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS---VK 360 (525)
Q Consensus 284 yv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~---~~ 360 (525)
|+++.+.+.. +++|-....++||.|||..+..+..+ .+.+.++++|++..+.|..+|++.++.+++...... ..
T Consensus 735 ya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999998744 47888889999999999999999875 677999999999999999999999999998763221 11
Q ss_pred EEecccccccCCCCCCceeeEEEEEEEEEecCCCC------------------------CCC------------------
Q 009797 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEED------------------------LPK------------------ 398 (525)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~------------------------~~~------------------ 398 (525)
...-......-...+...+|++.+.+.|+|..-.- ..+
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v 891 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV 891 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence 11111001100111356789999999998743210 000
Q ss_pred ----c-------------cc---------------------------c--------cc----c-------------cc--
Q 009797 399 ----S-------------FE---------------------------E--------SQ----T-------------VQ-- 407 (525)
Q Consensus 399 ----~-------------~~---------------------------~--------~~----~-------------~~-- 407 (525)
+ .+ + .. . ++
T Consensus 892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s 971 (1227)
T COG5038 892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS 971 (1227)
T ss_pred ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence 0 00 0 00 0 00
Q ss_pred -------C----C----------------------------------------CC--C-----CCCCcceEEEEEEeeec
Q 009797 408 -------K----A----------------------------------------PE--N-----TPAGGGLLVVIVHEAQD 429 (525)
Q Consensus 408 -------~----~----------------------------------------~~--~-----~~~~~g~L~V~v~~a~~ 429 (525)
. + |. . .-..+|.|.+.+.+|.|
T Consensus 972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038 972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence 0 0 00 0 01146788999999999
Q ss_pred CCCC---CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEE
Q 009797 430 VEGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIF 505 (525)
Q Consensus 430 L~~~---~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~ 505 (525)
|+.. +.+||||++.++++ .++|+++++|+||+|||.|+..|... ..+.+.+.|+|++. -.+++.||.+.|+
T Consensus 1052 l~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~----~~knd~lg~~~id 1126 (1227)
T COG5038 1052 LPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDS----GEKNDLLGTAEID 1126 (1227)
T ss_pred CcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeeccc----CCCcccccccccc
Confidence 9874 46999999999998 57999999999999999999999875 56899999999987 4689999999999
Q ss_pred ccccccch
Q 009797 506 YLVHRFKQ 513 (525)
Q Consensus 506 l~~~~~~~ 513 (525)
|..+..+.
T Consensus 1127 L~~l~~~~ 1134 (1227)
T COG5038 1127 LSKLEPGG 1134 (1227)
T ss_pred HhhcCcCC
Confidence 99986664
No 17
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.79 E-value=1e-18 Score=149.95 Aligned_cols=122 Identities=26% Similarity=0.472 Sum_probs=103.9
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997654 58999999999999999999998766678999999999999999
Q ss_pred ccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
+||++.+++.++........|+.+.+.... ....++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCC-CccccCceEEEEEEe
Confidence 999999999999877666778877654322 233577899999876
No 18
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=9.5e-19 Score=154.53 Aligned_cols=128 Identities=22% Similarity=0.326 Sum_probs=104.7
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCC-CCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
.|+|+|++|++|+.++..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++..+.+.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 489999999999999999999999999999744 58888866 69999999999999876667899999999988899
Q ss_pred CccEEEEEECcccCCC----CCeeEEEeccccccc-CCCCCCceeeEEEEEEEEEec
Q 009797 340 DKMGMNVVPLKELTPE----EPSVKTLDLLKNMDL-NDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~----~~~~~~~~l~~~~~~-~~~~~~~~~G~l~l~l~~~p~ 391 (525)
++||++.++|+++..+ .....|++|...... ++.+..+.+|+|++++.|.+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999999999753 234678887543211 012335678999999999753
No 19
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=1e-18 Score=152.46 Aligned_cols=111 Identities=27% Similarity=0.448 Sum_probs=95.2
Q ss_pred ceeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE-ec
Q 009797 258 PVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DW 333 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d~ 333 (525)
..|.|.|+|++|+||+..+ ..|.+||||++++.+.+ ..++||+++++++||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3689999999999999864 56889999999996543 34679999999999999999999997 56789999999 67
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEecccccc
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD 369 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~ 369 (525)
+..+++++||++.++|+++..+.....|+.|.+...
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 888899999999999999987777778888865443
No 20
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1e-18 Score=150.74 Aligned_cols=121 Identities=33% Similarity=0.489 Sum_probs=100.7
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC---CCeEEEEEEecCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE---SQAVELAVYDWEQVG 337 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~---~~~L~i~v~d~~~~~ 337 (525)
.|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||.|||+|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999998755 58999999999999999999997543 367999999998876
Q ss_pred -CCCccEEEEEECcccC-CCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 338 -KHDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 338 -~d~~lG~~~i~L~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
++++||++.++++++. .+.....|++|.+.. ..++.+|+|++++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999998 445566777774321 1245799999998763
No 21
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.79 E-value=1.4e-18 Score=149.40 Aligned_cols=122 Identities=31% Similarity=0.497 Sum_probs=100.8
Q ss_pred eeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCC
Q 009797 259 VGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (525)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||+|.|.+. ...+.|.++|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 3467999999999873 23479999999999999999999987 44789999999999988
Q ss_pred CCCccEEEEEECcccCCCCCee-EEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 338 KHDKMGMNVVPLKELTPEEPSV-KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 338 ~d~~lG~~~i~L~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+|++||++.+++.++....... .+..+. .+++.+|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999999775543 222221 13567899999999986
No 22
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=1.4e-18 Score=150.29 Aligned_cols=123 Identities=29% Similarity=0.476 Sum_probs=102.8
Q ss_pred eEEEEEEEeccCCcccCc--CCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCC
Q 009797 260 GILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (525)
|+|+|+|++|++|+..+. .+.+||||++.+++.. .+|++++++.||.|||+|.|.+.....+.|.++|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 7899999999997544 69999999999999999999998756789999999999888
Q ss_pred CCCccEEEEEECcccCC---CCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 338 KHDKMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 338 ~d~~lG~~~i~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
++++||++.+++.++.. ......|+.|.... ...+...+|+|+++++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR---PGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCcc---cCccccccceEEEEEEC
Confidence 99999999999999973 23345677664321 11335689999999875
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=2.1e-18 Score=147.08 Aligned_cols=119 Identities=17% Similarity=0.283 Sum_probs=100.1
Q ss_pred EEEEEEeccCCcccC-cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 262 LHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 262 L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
|.|+|++|+||+..+ ..|.+||||++++++.. .++|+++++|.||.|||+|.|.+.+. ...|.+.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997543 36899999999999999999999753 578999999999999999
Q ss_pred ccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+||++.++++++..+.....|+++.+.- ...+.+|+|++++.|
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999999877778888875421 123468999998864
No 24
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.79 E-value=8.5e-19 Score=149.75 Aligned_cols=105 Identities=30% Similarity=0.414 Sum_probs=91.4
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEe-e--CCCCCeEEEEEEec
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTV-R--DPESQAVELAVYDW 333 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~v~d~ 333 (525)
.+.|.|+|++|+||+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 688999999999999999 8999999999997543 3457999999999999999999987 2 33467899999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
+..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999977666677654
No 25
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.79 E-value=3.1e-18 Score=147.54 Aligned_cols=122 Identities=25% Similarity=0.465 Sum_probs=102.5
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|.|+|++|+||+. ..|.+||||+++++... ..++|++++++.||+|||+|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPP-QKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCC-cEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 6799999999987 66899999999997422 34699999999999999999999854 46789999999999889999
Q ss_pred cEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 342 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
||++.++++++..+.....|+++.... ..+....|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~----~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRP----YEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCC----CCCCCcceEEEEEEEEecc
Confidence 999999999999877777787764321 1235679999999999864
No 26
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.78 E-value=4.3e-18 Score=146.45 Aligned_cols=122 Identities=22% Similarity=0.341 Sum_probs=101.1
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+.......+.+.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 45799999999999874 478999999997643 2578875 58999999999998765544689999999999999
Q ss_pred CCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 339 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
|++||++.++|.++..+.....|+++.+.. ..+.+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999887778888875431 123567899999999986
No 27
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.78 E-value=1e-18 Score=151.35 Aligned_cols=109 Identities=17% Similarity=0.285 Sum_probs=91.4
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC-----CCCCcEEEEEECCe-----E
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK-----HHTNPYARILFRGE-----E 448 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~-----~~~dPyv~v~l~~~-----~ 448 (525)
.|+|.+++.|.| ..+.|.|.|++|+||+.. +.+||||++++..+ +
T Consensus 1 ~Gel~~sL~Y~~-------------------------~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~k 55 (138)
T cd08407 1 TGEVLLSISYLP-------------------------AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKK 55 (138)
T ss_pred CCEEEEEEEEeC-------------------------CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccce
Confidence 499999999998 478899999999999864 34899999998652 4
Q ss_pred EEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhh
Q 009797 449 RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
+||++++++.||+|||.|.|.++..... ..|.|+|||++. ++++++||++.+++.....+.++|
T Consensus 56 kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~----~~~~d~iG~v~lg~~~~g~~~~hW 120 (138)
T cd08407 56 KQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS----PGQSLPLGRCSLGLHTSGTERQHW 120 (138)
T ss_pred eccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC----CcCcceeceEEecCcCCCcHHHHH
Confidence 5899999999999999999999865443 489999999986 788999999999998744444444
No 28
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.78 E-value=2.7e-18 Score=147.00 Aligned_cols=115 Identities=30% Similarity=0.503 Sum_probs=99.9
Q ss_pred eEEEEEEEeccCCcccCc------CCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 260 GILHVKVVKAMNLKKKDL------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~------~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
|+|+|+|++|++|+..+. .|.+||||++++++. .++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998874 368999999999863 36999999999999999999999876678999999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+.. ++++||++.+++.++..+.....|+++. ....|+|++++.|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8999999999999998876677888873 2367999998764
No 29
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.78 E-value=6.7e-18 Score=145.35 Aligned_cols=123 Identities=21% Similarity=0.346 Sum_probs=101.4
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCC
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (525)
|.++|+|+|++|++|+..+..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.++|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998765 5999999999999999999988764 67899999999876
Q ss_pred CCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 338 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 338 ~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+|++||++.+++.++......+ +++.+.. ...+++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~--~~l~~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRT--LPLRKRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceE--EEcccCC---CCCCCCCCCEEEEEEEEcc
Confidence 5899999999999876544444 4443221 1235788999999998765
No 30
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.77 E-value=2.3e-18 Score=147.86 Aligned_cols=110 Identities=30% Similarity=0.437 Sum_probs=93.8
Q ss_pred CCCceeEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~ 329 (525)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 344568999999999999999875 899999999996543 334699999999999999999999863 235689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|||++..+++++||++.++|.++...+....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877666677764
No 31
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.77 E-value=7.7e-18 Score=150.30 Aligned_cols=124 Identities=27% Similarity=0.453 Sum_probs=103.0
Q ss_pred ceeEEEEEEEeccCCcccC------------------------------cCCCCCcEEEEEEcCCcCCceeeeecCCCCC
Q 009797 258 PVGILHVKVVKAMNLKKKD------------------------------LLGASDPYVKLKITEDKLPSKKTTVKHKNLN 307 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~n 307 (525)
-.|+|.|+|++|++|+++| ..|.+||||++++++... .+|++++++.|
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~n 82 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSEN 82 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCC
Confidence 3699999999999999987 246789999999987543 68999999999
Q ss_pred CeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEE
Q 009797 308 PEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (525)
Q Consensus 308 P~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (525)
|+|||+|.|.+... .+.|.|+|||++..+ +++||++.++++++..+.....|+++... ..+..+..|.|+++++
T Consensus 83 P~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~----~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 83 PVWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS----NGKPPKPGAKIRVSLQ 156 (158)
T ss_pred CccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC----CCCCCCCCCEEEEEEE
Confidence 99999999998654 468999999999775 68999999999999988777888887542 1122455789999998
Q ss_pred EE
Q 009797 388 YK 389 (525)
Q Consensus 388 ~~ 389 (525)
|.
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 83
No 32
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=3.8e-18 Score=146.37 Aligned_cols=112 Identities=16% Similarity=0.276 Sum_probs=93.5
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 449 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~-----~~~ 449 (525)
+|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~-------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~ 55 (125)
T cd04029 1 SGEILFSLSYDY-------------------------KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKR 55 (125)
T ss_pred CcEEEEEEEEEC-------------------------CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccce
Confidence 599999999976 478899999999999752 5799999999952 356
Q ss_pred EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
||++++++.||+|||+|.|.+..... +..|.|+|||++. ++++++||++.|+|.++...+ ....||
T Consensus 56 kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~----~~~~~~lG~~~i~l~~~~~~~----~~~~w~ 122 (125)
T cd04029 56 KTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR----FGRNTFLGEVEIPLDSWNFDS----QHEECL 122 (125)
T ss_pred EeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCcEEEEEEEeCCcccccC----CcccEE
Confidence 99999999999999999999976433 3489999999975 778999999999999986553 355555
No 33
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.76 E-value=3.9e-18 Score=146.60 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=95.3
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 449 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~-----~~~ 449 (525)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~Y~~-------------------------~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~ 55 (128)
T cd08392 1 TGEIEFALHYNF-------------------------RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKR 55 (128)
T ss_pred CcEEEEEEEEeC-------------------------CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccccee
Confidence 489999999986 467999999999999763 5789999999963 356
Q ss_pred EeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
||++++++.||+|||+|.|.+...... ..|.+.|||.+. ++++++||++.|+|.++... +.-.....||.
T Consensus 56 kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~----~~~~~~lG~~~i~L~~~~~~-~~~~~~~~W~~ 126 (128)
T cd08392 56 KTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT----LKRRVFLGEVLIPLADWDFE-DTDSQRFLWYP 126 (128)
T ss_pred ecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC----CcCcceEEEEEEEcCCcccC-CCCccccceEE
Confidence 999999999999999999998764333 499999999975 67899999999999997322 22346677874
No 34
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.76 E-value=4.1e-18 Score=146.17 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=94.6
Q ss_pred CCCceeEEEEEEEeccCCcccCc-CCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (525)
+....|.|.|+|++|+||+..+. .|.+||||++++.+.. ...+||++++++.||+|||+|.|.+... ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45568999999999999998875 4789999999996543 3457999999999999999999998642 35689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|||++..+++++||++.++|.++........|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999888777778765
No 35
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=9e-18 Score=143.22 Aligned_cols=115 Identities=26% Similarity=0.430 Sum_probs=96.0
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|+|+|++|+||+.. .+||||++++++.. .+|++++++.||+|||+|.|.+..+....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 389999999999877 68999999998643 6999999999999999999998776678999999999976 789
Q ss_pred ccEEEEEECcccCCCC-----CeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 341 KMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
+||++.++++++.... ....|++|... .+.+.+|+|++++.|-
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~------~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK------KGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCC------CCCccceEEEEEEEec
Confidence 9999999999987542 23467776432 1256889999999873
No 36
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.76 E-value=2.5e-18 Score=149.09 Aligned_cols=108 Identities=16% Similarity=0.242 Sum_probs=89.9
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCe-----EEEe
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----ERKT 451 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~-----~~kT 451 (525)
|+|.++++|.| ..+.|.|+|++|+||+.. +.+||||++++.+. ++||
T Consensus 2 G~i~~sL~Y~~-------------------------~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT 56 (136)
T cd08406 2 GEILLSLSYLP-------------------------TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKT 56 (136)
T ss_pred cEEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCC
Confidence 89999999987 366899999999999863 57899999999532 4589
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhh
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
++++++.||+|||+|.|.++..... ..|.|+|+|++. ++++++||++.|+......+.++|
T Consensus 57 ~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~----~~~~~~iG~v~lg~~~~g~~~~hW 118 (136)
T cd08406 57 SVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE----DGKTPNVGHVIIGPAASGMGLSHW 118 (136)
T ss_pred ccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC----CCCCCeeEEEEECCCCCChhHHHH
Confidence 9999999999999999999764333 489999999985 778999999999988754444443
No 37
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.76 E-value=4.6e-18 Score=146.04 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=93.5
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 449 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~-----~~~ 449 (525)
+|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~ 55 (125)
T cd08393 1 QGSVQFALDYDP-------------------------KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKR 55 (125)
T ss_pred CcEEEEEEEEEC-------------------------CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccc
Confidence 599999999976 467899999999999863 4789999999953 346
Q ss_pred EeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
||++++++.||+|||.|.|.+...... ..|.++|||++. ++++++||++.|+|.++... +....||
T Consensus 56 kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~~~~~----~~~~~W~ 122 (125)
T cd08393 56 KTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS----LGRNSFLGEVEVDLGSWDWS----NTQPTWY 122 (125)
T ss_pred cCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC----CCCCcEeEEEEEecCccccC----CCCcceE
Confidence 999999999999999999998754333 489999999975 78899999999999997433 3456676
No 38
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=1.2e-17 Score=145.39 Aligned_cols=122 Identities=36% Similarity=0.631 Sum_probs=100.3
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc----CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (525)
.|+|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999997641 2246899999999999999999998653 56899999999999
Q ss_pred CCCCccEEEEEECcccCCCCC------eeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 337 GKHDKMGMNVVPLKELTPEEP------SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+++++||++.+++.++..... ...|++|.+. ...++..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEee
Confidence 999999999999999986542 2355555321 1135679999999987
No 39
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=1.4e-17 Score=142.08 Aligned_cols=118 Identities=31% Similarity=0.546 Sum_probs=99.5
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.++|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999998654 5899999999999999999998653 57899999999988899
Q ss_pred CccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 340 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
++||++.+++.++..+.. .|+.+... ....+..|+|.+++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECccc-----CCCCceeeEEEEEEEe
Confidence 999999999999976654 45554321 1124679999999876
No 40
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.76 E-value=5.4e-18 Score=145.70 Aligned_cols=110 Identities=31% Similarity=0.621 Sum_probs=95.9
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (525)
+....|.|.|+|++|++|+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 4456799999999999999999889999999999965434457999999999999999999998643 35689999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
++..+++++||++.++++++..+.....|+++
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 99999999999999999999877777778775
No 41
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=5.2e-18 Score=142.65 Aligned_cols=96 Identities=30% Similarity=0.512 Sum_probs=85.1
Q ss_pred eEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC---CCCeEEEEEEecCC
Q 009797 260 GILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ 335 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~ 335 (525)
|+|+|+|++|++|+..+.. |.+||||++++.+......+|+++++++||+|||+|.|.+... ..+.|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999965444457999999999999999999988653 35689999999999
Q ss_pred CCCCCccEEEEEECcccCCC
Q 009797 336 VGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~ 355 (525)
.++|++||++.+++.++...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC
Confidence 99999999999999999843
No 42
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.76 E-value=6.1e-18 Score=144.46 Aligned_cols=111 Identities=24% Similarity=0.307 Sum_probs=91.7
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC--CCCCCcEEEEEECC-----eEEEe
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG--KHHTNPYARILFRG-----EERKT 451 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~--~~~~dPyv~v~l~~-----~~~kT 451 (525)
.|+|.+++.|. .+.|.|.|++|+||+. .+.+||||++++.+ .++||
T Consensus 1 ~G~l~~~l~y~---------------------------~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT 53 (122)
T cd08381 1 GGQVKLSISYK---------------------------NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKT 53 (122)
T ss_pred CCeEEEEEEEe---------------------------CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeC
Confidence 38999999985 4679999999999987 35799999999963 35799
Q ss_pred eeecCCCCCcccceEEEEe-cCCC-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 452 KHVKKNRDPRWEEEFQFML-EEPP-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v-~~~~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
++++++.||+|||+|+|.+ +... ....|.|+|||++. ++++++||++.++|.++... +....||.
T Consensus 54 ~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~----~~~~~W~~ 120 (122)
T cd08381 54 KVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS----LVENEFLGGVCIPLKKLDLS----QETEKWYP 120 (122)
T ss_pred CccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC----CcCCcEEEEEEEeccccccC----CCccceEE
Confidence 9999999999999999997 3221 23589999999986 67899999999999998633 34577874
No 43
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=1.3e-17 Score=145.49 Aligned_cols=111 Identities=23% Similarity=0.320 Sum_probs=91.6
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECCe----
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE---- 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~~---- 447 (525)
....|+|.+++.|. .|.|.|+|++|+||+.. +.+||||++++...
T Consensus 14 ~~~~G~l~lsl~y~---------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~ 66 (146)
T cd04028 14 SPSMGDIQLGLYDK---------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI 66 (146)
T ss_pred CCCcceEEEEEEeC---------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc
Confidence 45689999999882 46899999999999753 46899999999542
Q ss_pred -EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEE-cccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 448 -ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS-VSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 448 -~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d-~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
++||+++++|.||+|||+|+|.+. . .+..|.|+||+ .+. ++++++||.+.|+|+++..++ ....||
T Consensus 67 ~k~KT~v~kktlnPvfNE~F~f~v~-l-~~~~L~v~V~~d~~~----~~~~~~iG~~~i~L~~l~~~~----~~~~Wy 134 (146)
T cd04028 67 AKKKTKIARKTLDPLYQQQLVFDVS-P-TGKTLQVIVWGDYGR----MDKKVFMGVAQILLDDLDLSN----LVIGWY 134 (146)
T ss_pred cceeceecCCCCCCccCCeEEEEEc-C-CCCEEEEEEEeCCCC----CCCCceEEEEEEEcccccCCC----CceeEE
Confidence 569999999999999999999998 2 55699999995 443 678999999999999985443 345666
No 44
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=1.1e-17 Score=142.44 Aligned_cols=112 Identities=20% Similarity=0.292 Sum_probs=93.2
Q ss_pred EEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEECC------eEEEe
Q 009797 381 QLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG------EERKT 451 (525)
Q Consensus 381 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~------~~~kT 451 (525)
+|.+++.|.| ..+.|.|+|++|+||+. .+.+||||++++.. .++||
T Consensus 2 ~i~~sL~Y~~-------------------------~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT 56 (124)
T cd08680 2 QVQIGLRYDS-------------------------GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRT 56 (124)
T ss_pred eEEEEEEECC-------------------------CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEc
Confidence 5888999976 57889999999999986 35789999999852 35699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
++++++.||+|||+|+|.+...... ..|.+.|||.+. ++++++||.+.|+|.++....+ ....||.
T Consensus 57 ~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~---~~~~Wy~ 123 (124)
T cd08680 57 KALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP----DQQEECLGGAQISLADFESSEE---MSTKWYN 123 (124)
T ss_pred CccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC----CCceeEEEEEEEEhhhccCCCc---ccccccc
Confidence 9999999999999999998765443 499999999975 6789999999999999844432 3677875
No 45
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.75 E-value=1e-17 Score=144.00 Aligned_cols=110 Identities=34% Similarity=0.516 Sum_probs=95.5
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (525)
+....+.|+|+|++|+||+..+..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 3456789999999999999999889999999999976554467999999999999999999998642 35689999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
++..+++++||++.++++++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999877777777765
No 46
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=2.7e-17 Score=141.86 Aligned_cols=118 Identities=33% Similarity=0.461 Sum_probs=99.5
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|+|+|++|++|+..+..+.+||||++.+.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998755334479999999999999999999998755678999999999888999
Q ss_pred ccEEEEEECcccCC---CCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 341 KMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 341 ~lG~~~i~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+||++.++|.++.. +.....|+++. ..|++++.+.+..
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 23556777762 3689999988864
No 47
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.75 E-value=2.5e-17 Score=143.10 Aligned_cols=116 Identities=28% Similarity=0.490 Sum_probs=100.2
Q ss_pred eeEEEEEEEeccCCcccCcC----------CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEE
Q 009797 259 VGILHVKVVKAMNLKKKDLL----------GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVEL 328 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i 328 (525)
.|.|+|+|++|++|+..+.. |.+||||++++++... .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 58999999999999988752 6799999999986543 58999999999999999999996 3578999
Q ss_pred EEEecCCCCCCCccEEEEEECcccCC--CCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 329 AVYDWEQVGKHDKMGMNVVPLKELTP--EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~L~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
.|||++..+++++||++.++|.++.. +.....|++| ...|+|++++.|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L------------~~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDL------------EPQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEc------------cCCcEEEEEEEEec
Confidence 99999988899999999999999987 4566788876 24699999999875
No 48
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=1.5e-17 Score=146.01 Aligned_cols=124 Identities=23% Similarity=0.369 Sum_probs=95.3
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEee---------------CCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVR---------------DPES 323 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~---------------~~~~ 323 (525)
.|+|+|++|+||+. ..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 46899999999997642 23468999999999999999999995 1123
Q ss_pred CeEEEEEEecCCCCCCCccEEEEEECcccCCC-CCeeEEEecccccccCC-----CCCCceeeEEEEEE
Q 009797 324 QAVELAVYDWEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLND-----GQNEKSRGQLVVEF 386 (525)
Q Consensus 324 ~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~l~l~l 386 (525)
..|.++|||++..++|++||++.+++.++..+ .....|++|.+..+..+ ..+....|.|++.+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999999986 45667887754433221 11233456666543
No 49
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=1.3e-17 Score=143.71 Aligned_cols=110 Identities=26% Similarity=0.433 Sum_probs=91.5
Q ss_pred CCCceeEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEE-ee--CCCCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VR--DPESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~-v~--~~~~~~L~i~v 330 (525)
+....+.|+|+|++|+||+..+.. |.+||||++++.+....+.||++++++.||+|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 445678999999999999998876 899999999997655555799999999999999999993 43 22345799999
Q ss_pred EecCCCCCCCccEEEEEECcccCCC--CCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPE--EPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~l 364 (525)
||++..++|++||++.++|+++... +....|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999999999999999999765 345566665
No 50
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.74 E-value=1.3e-17 Score=141.58 Aligned_cols=101 Identities=21% Similarity=0.196 Sum_probs=83.4
Q ss_pred cceEEEEEEeeecCCCC--CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccC
Q 009797 417 GGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSR 489 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~ 489 (525)
.+.|.|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+........|.|+|||++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 57899999999999864 5789999999964 2559999999999999999999997654456899999999752
Q ss_pred ccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 490 IGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 490 ~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
..++++||.+.|++.++..+ ...+.||+
T Consensus 91 ---~~~~~~lG~~~i~l~~~~~~----~~~~~Wy~ 118 (119)
T cd08685 91 ---SRDSGLLGCMSFGVKSIVNQ----KEISGWYY 118 (119)
T ss_pred ---cCCCEEEEEEEecHHHhccC----ccccceEe
Confidence 23579999999999998533 44588885
No 51
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.74 E-value=1.1e-17 Score=142.59 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=89.2
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc---CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (525)
+....+.|.|+|++|+||+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 455678999999999999998888899999999997655 2467999999999999999999998643 46799999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCC
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
|||++..+++++||++.++|+++....
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~ 115 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSE 115 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCC
Confidence 999999999999999999999996553
No 52
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1.4e-17 Score=138.75 Aligned_cols=94 Identities=20% Similarity=0.344 Sum_probs=82.0
Q ss_pred eEEEEEEEeccCCcccCcC----CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEecC
Q 009797 260 GILHVKVVKAMNLKKKDLL----GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~----g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (525)
|+|.|+|++|++|+..+.. +.+||||++++++.. +||++++++.||+|||+|.|.+.+.. ...|.++|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999997543 58999999999999999999987543 457999999999
Q ss_pred CCCCCCccEEEEEECcccCCCC
Q 009797 335 QVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998664
No 53
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.74 E-value=1.7e-17 Score=141.63 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=87.9
Q ss_pred EEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEee
Q 009797 381 QLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTK 452 (525)
Q Consensus 381 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~kT~ 452 (525)
+|.++++|.| ..|+|+|+|++|+||+.. +.+||||++++.+ .++||+
T Consensus 2 el~~sL~Y~p-------------------------~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~ 56 (135)
T cd08692 2 ELQLGTCFQA-------------------------VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTR 56 (135)
T ss_pred eEEEEeeecC-------------------------cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCc
Confidence 6899999998 488999999999999874 4569999999853 356999
Q ss_pred eecCCC-CCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccc-cchhhhc
Q 009797 453 HVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR-FKQECCR 517 (525)
Q Consensus 453 v~~~t~-nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~-~~~~~~~ 517 (525)
++++|. ||+|||+|.|.++....+-.+.|+|+|++. .+++++||++.++.++.. .+.++|.
T Consensus 57 v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~----~~~n~~IG~v~lG~~~~~~~~~~hW~ 119 (135)
T cd08692 57 LVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS----VRRKHFLGQVWISSDSSSSEAVEQWK 119 (135)
T ss_pred cEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC----CcCCceEEEEEECCccCCchhhhhHH
Confidence 999995 699999999999875333389999999975 678999999999998742 2344443
No 54
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.73 E-value=4.8e-17 Score=138.97 Aligned_cols=118 Identities=25% Similarity=0.440 Sum_probs=98.2
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|.|+|++|++|+.++..|.+||||++.+++.. ..+|++++++.||.|||+|.|.+.. ..+.|.++|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997643 3699999999999999999999864 35789999999999999999
Q ss_pred cEEEEEECcccCCCC-CeeEEEecccccccCCCCCCceeeEEEEEEE
Q 009797 342 MGMNVVPLKELTPEE-PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (525)
Q Consensus 342 lG~~~i~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (525)
||++.+++.++.... ....|++|.+. .......|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence 999999999887542 35677776431 122457899998864
No 55
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=2.7e-17 Score=137.07 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=81.2
Q ss_pred ceEEEEEEeeecCCCC-------CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc
Q 009797 418 GLLVVIVHEAQDVEGK-------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 490 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~-------~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 490 (525)
|+|.|+|++|++|+.. +.+||||+++++++.+||++++++.||+|||.|.|.+.+...+..|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-- 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-- 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC--
Confidence 7899999999999863 2489999999998888999999999999999999998765444589999999986
Q ss_pred cCCCCCccceEEEEEccccccch
Q 009797 491 GLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
+++|++||++.++|.++..+.
T Consensus 79 --~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 --FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --CCCCcceEEEEEEHHHHHhhC
Confidence 688999999999999986554
No 56
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.73 E-value=5.7e-17 Score=138.95 Aligned_cols=118 Identities=28% Similarity=0.502 Sum_probs=95.8
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC--C
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK--H 339 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~--d 339 (525)
|+|+|++|++|+..+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG--QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc--cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 7899999999999998899999999999753 23699999999999999999999965 6799999999998765 5
Q ss_pred CccEEEEEECcccCCCC-CeeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 340 DKMGMNVVPLKELTPEE-PSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
++||++.+++.++.... ....|+++.+. .+ ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~-~~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKL-KK--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecC-CC--CCCceEeeEEEEEe
Confidence 79999999999997654 33556665321 11 12456789998876
No 57
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.73 E-value=2.1e-17 Score=142.11 Aligned_cols=101 Identities=26% Similarity=0.409 Sum_probs=87.5
Q ss_pred CCCceeEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (525)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 445578999999999999999875 899999999997554 3356999999999999999999998642 35689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCC
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~ 355 (525)
|||++..+++++||++.|+|.++...
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccC
Confidence 99999999999999999999999654
No 58
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.73 E-value=1.4e-17 Score=143.65 Aligned_cols=95 Identities=25% Similarity=0.335 Sum_probs=86.3
Q ss_pred CcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
..|.|+|.|.+|.||..+ +.+||||.+.+++++.||+++++++||+|||.|+|.+.++ +..|.++|||+|.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---- 77 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---- 77 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC----
Confidence 478999999999999763 6799999999999999999999999999999999999986 5699999999997
Q ss_pred CCCCccceEEEEEccccccchhhh
Q 009797 493 LHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
+++|++||.+.|++..+...++.+
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred CCcccccceeeeccHHHHHHhhhh
Confidence 899999999999999986665444
No 59
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=8.7e-17 Score=138.78 Aligned_cols=117 Identities=31% Similarity=0.488 Sum_probs=99.4
Q ss_pred EEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCCCCCCccE
Q 009797 266 VVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKHDKMG 343 (525)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d~~lG 343 (525)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 57899999999998654 5999999999999999999999754 4688999999999988999999
Q ss_pred EEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCC
Q 009797 344 MNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 393 (525)
Q Consensus 344 ~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (525)
++.++++++..+.....+++|... ......|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence 999999999988777778877421 12345799999999998643
No 60
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.72 E-value=3.4e-17 Score=140.75 Aligned_cols=113 Identities=17% Similarity=0.272 Sum_probs=94.6
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEEEee
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERKTK 452 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~---~~~~kT~ 452 (525)
+|+|++++.|.| ..|.|.|+|++|+||+.. +.+||||++++. .+.++|+
T Consensus 2 ~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08387 2 RGELHFSLEYDK-------------------------DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSK 56 (124)
T ss_pred CCEEEEEEEECC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCc
Confidence 699999999986 468999999999999863 579999999994 2357999
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 453 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+++++.||+|||.|.|.+..... +..|.|+|||++. ++++++||++.+++.++..++ ....||.
T Consensus 57 v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~----~~~~~~iG~~~i~l~~~~~~~----~~~~W~~ 121 (124)
T cd08387 57 IHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ----FSRDECIGVVELPLAEVDLSE----KLDLWRK 121 (124)
T ss_pred eEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC----CCCCceeEEEEEecccccCCC----CcceEEE
Confidence 99999999999999999875432 3489999999975 778999999999999986543 4466763
No 61
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=1.1e-16 Score=139.56 Aligned_cols=120 Identities=25% Similarity=0.450 Sum_probs=97.9
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC---------CCCeEEEEEE
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------ESQAVELAVY 331 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------~~~~L~i~v~ 331 (525)
.|+|+|++|++|+.+|..|.+||||++++++.. ++|++++++.||.|||+|.|.+... ....|.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999998654 6899999999999999999975432 1257999999
Q ss_pred ecCCCCCCCccEEEEE-ECcccCC---CCCeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 332 DWEQVGKHDKMGMNVV-PLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i-~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
|++..++|++||++.+ ++..+.. ......|++|.+ .+...|+|.+++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999987 5444443 345567777632 24579999999999874
No 62
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.72 E-value=5.5e-17 Score=139.66 Aligned_cols=110 Identities=35% Similarity=0.547 Sum_probs=94.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC---CCCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~ 331 (525)
+....+.|.|+|++|+||+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 345678999999999999999988999999999996444445799999999999999999997532 23467999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|++..+++++||++.++++++..+.....|+.|
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 999999999999999999999987777788776
No 63
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.72 E-value=6.2e-17 Score=138.16 Aligned_cols=106 Identities=26% Similarity=0.398 Sum_probs=89.1
Q ss_pred ccccCCCc-cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC-CCC
Q 009797 246 VPILDPSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-PES 323 (525)
Q Consensus 246 ~~i~~~~~-~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-~~~ 323 (525)
.|+++... ......|.|+|+|++|++|+. +..+.+||||+|++++. .++|++++++.||+|||+|.|.... ...
T Consensus 13 ~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~ 88 (127)
T cd04032 13 SPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPG 88 (127)
T ss_pred CCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCCC
Confidence 45665544 346789999999999999984 66788999999999866 3699999999999999999997533 346
Q ss_pred CeEEEEEEecCCCCCCCccEEEEEECcccCCC
Q 009797 324 QAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 324 ~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~ 355 (525)
+.|.|+|||++..++|++||++.++|.....+
T Consensus 89 ~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 89 GKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 79999999999999999999999999976643
No 64
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.72 E-value=5e-17 Score=139.30 Aligned_cols=109 Identities=32% Similarity=0.434 Sum_probs=94.8
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEE-eeC--CCCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~-v~~--~~~~~L~i~v~ 331 (525)
+....+.|.|+|++|+||+..+..|.+||||++.+.+.+..+++|+++++ .||+|||+|.|. +.. .....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 45567899999999999999998889999999988766555679999888 999999999998 542 23678999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|++..+++++||++.++|+++..+.....|++|
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 999999999999999999999888777888876
No 65
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.71 E-value=5.3e-17 Score=135.10 Aligned_cols=98 Identities=33% Similarity=0.521 Sum_probs=86.4
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|.|+|++|++|+..+..+.+||||++++++.. ++|++++++.||+|||+|.|.+.++..+.|.++|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEE---EeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 389999999999999888999999999998743 689999999999999999999998777899999999975 88
Q ss_pred ccEEEEEECcccCCCC--CeeEEEec
Q 009797 341 KMGMNVVPLKELTPEE--PSVKTLDL 364 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~--~~~~~~~l 364 (525)
+||++.++|.++.... ....|++|
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L 100 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPL 100 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEec
Confidence 9999999999998654 34567766
No 66
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.71 E-value=5.5e-17 Score=139.45 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=94.7
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEee
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK 452 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~---~~~kT~ 452 (525)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ +.++|+
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08385 2 LGKLQFSLDYDF-------------------------QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETK 56 (124)
T ss_pred ccEEEEEEEEeC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecc
Confidence 699999999976 477899999999999863 5789999999854 356999
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 453 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+++++.||+|||.|.|.+..... ...|.|+|||++. ++++++||++.+++.++.. .....+||+
T Consensus 57 v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~~~~----~~~~~~W~~ 121 (124)
T cd08385 57 VHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR----FSKHDLIGEVRVPLLTVDL----GHVTEEWRD 121 (124)
T ss_pred cCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEEecCcccC----CCCcceEEE
Confidence 99999999999999999875322 3589999999975 6789999999999999754 445677764
No 67
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.71 E-value=1e-16 Score=135.70 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=81.9
Q ss_pred cceEEEEEEeeecCCCC--CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 417 GGLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
.|.|.|+|++|++++.. +.+||||++.+++++.+|+++++ +.||+|||+|+|.+.+. .+.|.|+|||++. +
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~----~ 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA----F 74 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC----C
Confidence 37899999999988753 68999999999999999999876 79999999999999763 3589999999986 7
Q ss_pred CCCccceEEEEEcc-ccccchhhhcccCCCC
Q 009797 494 HPKVLFQFYFIFYL-VHRFKQECCRMKNDPF 523 (525)
Q Consensus 494 ~~d~~lG~v~I~l~-~~~~~~~~~~~~~~~~ 523 (525)
++|++||++.|++. .+..++ ..+.||
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g~----~~~~W~ 101 (121)
T cd04016 75 TMDERIAWTHITIPESVFNGE----TLDDWY 101 (121)
T ss_pred cCCceEEEEEEECchhccCCC----CccccE
Confidence 88999999999996 454432 246666
No 68
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.71 E-value=3.8e-17 Score=138.77 Aligned_cols=105 Identities=19% Similarity=0.314 Sum_probs=87.3
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEecC
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (525)
..+.|.|+|++|+||+.++ .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4688999999999999998 7899999999997643 23468999999999999999999986422 357899999998
Q ss_pred CCC-CCCccEEEEEECcccCCCCCeeEEEe
Q 009797 335 QVG-KHDKMGMNVVPLKELTPEEPSVKTLD 363 (525)
Q Consensus 335 ~~~-~d~~lG~~~i~L~~l~~~~~~~~~~~ 363 (525)
... ++++||++.+++.++..+.....|+.
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~ 118 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYY 118 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEe
Confidence 765 47899999999999986655555654
No 69
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=8.8e-17 Score=138.83 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=95.0
Q ss_pred eeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEE
Q 009797 378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EER 449 (525)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~ 449 (525)
+.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ .++
T Consensus 1 ~~G~l~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~ 55 (127)
T cd04030 1 PLGRIQLTIRYSS-------------------------QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR 55 (127)
T ss_pred CCeEEEEEEEEeC-------------------------CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceE
Confidence 3699999999986 478899999999999864 5799999999963 467
Q ss_pred EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
||++++++.||+|||+|.|.+..... ...|.+.|||.+.. +.+++++||++.|++.++..+ ...+.||.
T Consensus 56 kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~--~~~~~~~iG~~~i~l~~l~~~----~~~~~W~~ 125 (127)
T cd04030 56 KTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF--LSREKKLLGQVLIDLSDLDLS----KGFTQWYD 125 (127)
T ss_pred ecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc--cCCCCceEEEEEEeccccccc----CCccceEE
Confidence 99999999999999999999875422 35899999999741 016799999999999998443 34577874
No 70
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=9.9e-17 Score=138.49 Aligned_cols=110 Identities=30% Similarity=0.428 Sum_probs=93.4
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (525)
+....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 345678999999999999999988999999999996533 3457999999999999999999998532 356899999
Q ss_pred EecCCC--CCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQV--GKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~--~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++.. +++++||++.+++.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877666777765
No 71
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.70 E-value=7.4e-17 Score=138.48 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=92.3
Q ss_pred CCCceeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (525)
+....+.|.|+|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 3456789999999999999988 67899999999985432 2357899999999999999999998642 25689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|||++..+++++||++.++|.++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999766656666653
No 72
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.70 E-value=1.2e-16 Score=137.63 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=88.0
Q ss_pred eeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC---eEEE
Q 009797 378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG---EERK 450 (525)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~---~~~k 450 (525)
+.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. +++|
T Consensus 1 ~~G~l~~~l~y~~-------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~k 55 (128)
T cd08388 1 KLGTLFFSLRYNS-------------------------EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVK 55 (128)
T ss_pred CCeEEEEEEEEEC-------------------------CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceee
Confidence 3799999999986 467899999999999862 5689999999853 3569
Q ss_pred eeeecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 451 TKHVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
|++++++.||+|||+|.|. +..... +..|.++|||++. +++|++||++.|+|.++...
T Consensus 56 T~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~----~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 56 TRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR----YSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred ccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC----CCCCceeEEEEEeccccCCC
Confidence 9999999999999999994 442222 2479999999975 77899999999999998544
No 73
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.70 E-value=1.3e-16 Score=137.44 Aligned_cols=112 Identities=21% Similarity=0.316 Sum_probs=92.0
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~k 450 (525)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ .++|
T Consensus 2 ~G~l~~~l~~~~-------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~k 56 (125)
T cd04031 2 TGRIQIQLWYDK-------------------------VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRR 56 (125)
T ss_pred cEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccc
Confidence 599999999986 478899999999999863 5799999999965 4569
Q ss_pred eeeecCCCCCcccceEEEEecCC-C-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEP-P-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
|++++++.||+|||+|+|.+... + ....|.|+|||++. ++.+++||++.++|.+.. .+...+||.
T Consensus 57 T~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~----~~~~~~iG~~~i~l~~~~-----~~~~~~W~~ 123 (125)
T cd04031 57 TKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR----DGENDFLGEVVIDLADAL-----LDDEPHWYP 123 (125)
T ss_pred ccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC----CCCCcEeeEEEEeccccc-----ccCCcceEE
Confidence 99999999999999999986442 1 23589999999975 678999999999999832 123467874
No 74
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.70 E-value=1.2e-16 Score=137.51 Aligned_cols=109 Identities=27% Similarity=0.497 Sum_probs=89.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC---CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~ 329 (525)
+....+.|.|+|++|++|+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 344578999999999999999988999999999997532 2356899999999999999999986432 35789999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|||++..+++++||++.++|++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998899999999999998332 233456654
No 75
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.70 E-value=1.7e-16 Score=136.20 Aligned_cols=110 Identities=31% Similarity=0.467 Sum_probs=95.0
Q ss_pred CCCceeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~ 331 (525)
+....+.|.|+|++|++|+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 4556789999999999999998 678899999999865433457899999999999999999998643 2457999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|++..+++++||++.++|.++........|++|
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 999888999999999999999988877788876
No 76
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=3.5e-16 Score=134.85 Aligned_cols=115 Identities=29% Similarity=0.503 Sum_probs=94.1
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC----
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV---- 336 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~---- 336 (525)
.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+..+ ...|.++|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 689999999999999988999999999997543 6899999999999999999998654 56899999999852
Q ss_pred -------CCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 337 -------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 337 -------~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4789999999999988644 34666664321 2356799998864
No 77
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.70 E-value=8.4e-17 Score=141.72 Aligned_cols=105 Identities=34% Similarity=0.529 Sum_probs=89.7
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcC--------------------------CceeeeecCCCCC
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--------------------------PSKKTTVKHKNLN 307 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~--------------------------~~~kT~v~~~t~n 307 (525)
....+.+.|.|+|++|++|+.+|..|.+||||++.+.+... ..++|+++++++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 45678999999999999999999999999999999864311 2368999999999
Q ss_pred CeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEe
Q 009797 308 PEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363 (525)
Q Consensus 308 P~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 363 (525)
|.|||+|.|.+.....+.|.|+|||++ +++||++.++++++.. .....|++
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~ 152 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFK 152 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEe
Confidence 999999999998766789999999997 8899999999999983 33455654
No 78
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.6e-17 Score=156.43 Aligned_cols=236 Identities=22% Similarity=0.338 Sum_probs=175.0
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEE--EeeCC-CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNF--TVRDP-ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f--~v~~~-~~~~L~i~ 329 (525)
+......+..++.+|++|+.++.++..|||++..+.+. +..+.+|++..+++||.|+|+-.. ...+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 44556788999999999999999999999999998753 233457888999999999976544 33322 24567889
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEeccccccc--CCCCCCceeeEEEEEEEEEecCCCCCCCccccccccc
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL--NDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQ 407 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~--~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~ 407 (525)
|.|.+.+...+++|+..+++..+...+.+.+..-|.+.+.. .+......+|++.+++.|-.
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s----------------- 230 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS----------------- 230 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc-----------------
Confidence 99999999999999999999999887654332222222221 11222467888888887743
Q ss_pred CCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCC-CCe
Q 009797 408 KAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDR 478 (525)
Q Consensus 408 ~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~ 478 (525)
...-+.|++.+|.+|.. ++.+||||+.++... ++||.+.++|.||+||+.|.|.+....+ ..+
T Consensus 231 --------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~k 302 (362)
T KOG1013|consen 231 --------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKK 302 (362)
T ss_pred --------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcce
Confidence 34558888899988875 468999999998642 4699999999999999999999987544 348
Q ss_pred EEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCCC
Q 009797 479 LHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFRQ 525 (525)
Q Consensus 479 l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~~ 525 (525)
+.|.|||.+.+ ...+++|-...+.-. .-.-.++|++|
T Consensus 303 v~lsvgd~~~G----~s~d~~GG~~~g~~r------r~~v~~h~gr~ 339 (362)
T KOG1013|consen 303 VALSVGDYDIG----KSNDSIGGSMLGGYR------RGEVHKHWGRC 339 (362)
T ss_pred EEEeecccCCC----cCccCCCcccccccc------cchhhcCcccc
Confidence 99999999763 357778776654433 44556666654
No 79
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.70 E-value=2.1e-16 Score=141.60 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=92.4
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~-----~~~~k 450 (525)
+|+|.+++.|.|...+.. +.......|.|.|+|++|+||+.. +.+||||++++. ..++|
T Consensus 1 ~G~l~~~l~y~~~~~~~~-------------~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~k 67 (162)
T cd04020 1 RGELKVALKYVPPESEGA-------------LKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQK 67 (162)
T ss_pred CceEEEEEEecCcccccc-------------ccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCccee
Confidence 599999999998654311 122334789999999999999874 578999999984 24679
Q ss_pred eeeecCCCCCcccceEEEEecCC-C-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEP-P-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
|++++++.||+|||.|.|.+... . .+..|.|+|||++. ++++++||++.+++.++.
T Consensus 68 T~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~----~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 68 TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK----LSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred CCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC----CCCCceEEEEEEeCCccc
Confidence 99999999999999999986422 1 23479999999986 678999999999999874
No 80
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=3e-16 Score=132.98 Aligned_cols=113 Identities=37% Similarity=0.589 Sum_probs=96.4
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|+|+|++|++|+..+..+.+||||++.+.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999999888899999999997643 3699999999999999999999976557889999999998889999
Q ss_pred cEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEE
Q 009797 342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLV 383 (525)
Q Consensus 342 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~ 383 (525)
||++.+++.++..+.....++++.. .++...|.|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEE
Confidence 9999999999998877888888743 2344556654
No 81
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=2.5e-16 Score=132.43 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=82.9
Q ss_pred cceEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCC
Q 009797 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPK 496 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d 496 (525)
++.|.|+|++||+|+..+..||||++.+++++.+|+++++ .||.|||.|.|.+.+. +..|.|+|||++. ..|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~-----~~D 72 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGL-----IWD 72 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCC-----cCC
Confidence 3689999999999998888899999999998889999988 5999999999999764 3469999999863 389
Q ss_pred ccceEEEEEccccccchhhhcccCCCCC
Q 009797 497 VLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 497 ~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
++||++.|+|.++...+. .-...||.
T Consensus 73 D~lG~v~i~L~~v~~~~~--~~~~~Wy~ 98 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNE--EGPGEWLT 98 (127)
T ss_pred CceEEEEEEhHHcccCCC--CCCCccEe
Confidence 999999999999876532 33366763
No 82
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=1.2e-16 Score=134.04 Aligned_cols=100 Identities=28% Similarity=0.446 Sum_probs=85.7
Q ss_pred EEEEEEeccCCcccCc-CCCCCcEEEEEEcCCcCCceeeeecCCCCCCeE-eeEEEEEeeCC--CCCeEEEEEEecCCCC
Q 009797 262 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEW-NEEYNFTVRDP--ESQAVELAVYDWEQVG 337 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w-~e~f~f~v~~~--~~~~L~i~v~d~~~~~ 337 (525)
|.|+|++|++|+.++. .|.+||||++++++. .++|+++++++||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999998884 688999999999863 369999999999999 99999999753 2468999999999999
Q ss_pred CCCccEEEEEECcccCCC---CCeeEEEec
Q 009797 338 KHDKMGMNVVPLKELTPE---EPSVKTLDL 364 (525)
Q Consensus 338 ~d~~lG~~~i~L~~l~~~---~~~~~~~~l 364 (525)
++++||++.+++.++... .....|++|
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l 107 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPI 107 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEc
Confidence 999999999999999873 234556665
No 83
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.69 E-value=6.9e-16 Score=135.64 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=96.7
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC--------CCeEEEE
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--------SQAVELA 329 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--------~~~L~i~ 329 (525)
|.|+|....+.+|+..+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 444554444444777777789999999997 333445679999999999999999999996432 4579999
Q ss_pred EEecCCC-CCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 330 VYDWEQV-GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 330 v~d~~~~-~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
|||++.+ ++|++||++.++|+.+..+.....++++... .....|.|+++++...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999876 5799999999999999887666678887531 2456789999998754
No 84
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.69 E-value=1.9e-16 Score=136.05 Aligned_cols=103 Identities=33% Similarity=0.564 Sum_probs=89.8
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCC---CCCeEEEEEEecCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ 335 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~ 335 (525)
|.|.|+|++|++|+..+..+.+||||++++++.. ++|++.+ ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888899999999997654 4788777 489999999999999875 25789999999999
Q ss_pred CCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
.+++++||++.+++.++..+.....|+.+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 889999999999999998877667777663
No 85
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=9e-17 Score=139.37 Aligned_cols=108 Identities=27% Similarity=0.326 Sum_probs=88.1
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 330 (525)
+....+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 345578899999999999999988999999999996532 335689999999999999999999864 3467899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++..+++++||++.++.... +...+.|.++
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~m 121 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQM 121 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHH
Confidence 9999999999999999977643 3334444443
No 86
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.68 E-value=2.2e-16 Score=135.92 Aligned_cols=115 Identities=25% Similarity=0.389 Sum_probs=94.7
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCCC----CCeEEEEEEecCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ 335 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~ 335 (525)
.|+|+|++|++|+..+..+.+||||++++++.. .++|++.. ++.||.|||+|.|.+.... ...|.++|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 489999999999999888999999999998722 25888875 6899999999999997653 6789999999998
Q ss_pred CCCCCccEEEEEECcccCCCCC-----eeEEEecccccccCCCCCCceeeEEEE
Q 009797 336 VGKHDKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVV 384 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l 384 (525)
.++|++||++.+++.++..+.. ...|+.+.. .+++.+|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~-------~~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR-------PSGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC-------CCCCcCeEEeC
Confidence 8899999999999999987654 245666542 13678888864
No 87
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.68 E-value=2.2e-16 Score=141.44 Aligned_cols=109 Identities=29% Similarity=0.392 Sum_probs=91.9
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeC---CCCCeEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAV 330 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v 330 (525)
..+.|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 3468999999999999999998899999999998542 2345799999999999999999998532 2345799999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++..+++++||++.+++.++........|+.+
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999999999999999866666666654
No 88
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=4.4e-16 Score=130.92 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=82.9
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
++.|.|+|++|++|+.++ ..||||++++++.+ .+|++.++ .||+|||+|.|.+.+. ...|.++|||++.. .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCc-C
Confidence 378999999999997644 56999999998754 58888877 5999999999999775 44599999999865 8
Q ss_pred CCccEEEEEECcccCCCCCe--eEEEeccccc
Q 009797 339 HDKMGMNVVPLKELTPEEPS--VKTLDLLKNM 368 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~~~~--~~~~~l~~~~ 368 (525)
||+||++.++|+++..+... ..|++|....
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 99999999999999866543 5677765433
No 89
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.68 E-value=3e-16 Score=136.89 Aligned_cols=102 Identities=20% Similarity=0.315 Sum_probs=87.0
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC--CCCCcEEEEEECC-----eEEEe
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKT 451 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~-----~~~kT 451 (525)
.|+|++++.|.| ..+.|.|+|++|+||+.. +.+||||++++.+ +++||
T Consensus 1 ~G~i~~sl~y~~-------------------------~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT 55 (137)
T cd08409 1 LGDIQISLTYNP-------------------------TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKT 55 (137)
T ss_pred CcEEEEEEEECC-------------------------CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeec
Confidence 489999999987 367899999999999764 5689999999864 35699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
++++++.||+|||.|.|.++..+.. ..|.|+|||.+. .+++++||++.|+....
T Consensus 56 ~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 56 EVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG----VRKSKLLGRVVLGPFMY 110 (137)
T ss_pred ccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC----CCCcceEEEEEECCccc
Confidence 9999999999999999999754444 489999999986 67899999999997654
No 90
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=3.1e-16 Score=133.49 Aligned_cols=102 Identities=28% Similarity=0.481 Sum_probs=89.4
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
|+|+|+|++|++|+..+..|.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999997543 36899999999999999999998764 57899999999999999
Q ss_pred CccEEEEEECcccCCCCCeeEEEecc
Q 009797 340 DKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
++||++.+++.++..+ ....|+.+.
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~ 102 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEY 102 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEec
Confidence 9999999999999877 455566554
No 91
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.67 E-value=3.3e-16 Score=137.21 Aligned_cols=93 Identities=41% Similarity=0.693 Sum_probs=85.1
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
.|.|+|+|++|++|+..+. +.+||||+++++++. .+|++++++.||+|||+|.|.+.++ ...+.++|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999998887 899999999998654 6999999999999999999999876 6789999999999999
Q ss_pred CCccEEEEEECcccCCCC
Q 009797 339 HDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~~ 356 (525)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999988653
No 92
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=3.6e-16 Score=130.11 Aligned_cols=96 Identities=22% Similarity=0.361 Sum_probs=82.1
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
.|.|+|++|+||+.. +.+||||+++++++.++|+++++|.||+|||.|+|.+.++ ..+.|.|+|+|++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~------- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT------- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC-------
Confidence 388999999999863 5799999999999999999999999999999999999875 45689999999952
Q ss_pred CccceEEEEEccccccchhhhcccCCCCC
Q 009797 496 KVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+++||++.++|.++.... ....+.||.
T Consensus 73 ~~~iG~~~i~l~~l~~~~--~~~~~~w~~ 99 (105)
T cd04050 73 GKSLGSLTLPLSELLKEP--DLTLDQPFP 99 (105)
T ss_pred CCccEEEEEEHHHhhccc--cceeeeeEe
Confidence 789999999999986442 334677773
No 93
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=2.8e-16 Score=134.72 Aligned_cols=120 Identities=27% Similarity=0.432 Sum_probs=94.4
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
+|+|+|++|++|+..+..|.+||||++++++... ..+|++++++.||+|||+|.|.+..+..+.|.++|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4789999999999999889999999999987652 357888889999999999999987666789999999999999999
Q ss_pred ccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+||++.+++.+..-. .++.+.-+ . ......|.++....+.|
T Consensus 80 ~iG~~~i~l~~~~~~-~~~~~~~~----~----~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFFS-KHRATCGL----P----PTYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeecccccc-hHHHhccC----C----CcccccCceecCcccCc
Confidence 999999999977642 22222211 1 11335677776665544
No 94
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=3e-16 Score=136.76 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=86.8
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC------eEEE
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERK 450 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~------~~~k 450 (525)
|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++|
T Consensus 2 ~ei~~sL~Y~~-------------------------~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~k 56 (138)
T cd08408 2 PELLLGLEYNA-------------------------LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSK 56 (138)
T ss_pred CeEEEEeEEcC-------------------------CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeecc
Confidence 78999999976 478899999999999863 5789999999953 2459
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
|++++++.||+|||+|.|.+..... +..|.|+|||.+. ++++++||++.+++...
T Consensus 57 T~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 57 TSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK----MKRKEMIGWFSLGLNSS 112 (138)
T ss_pred ceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC----CCCCcEEEEEEECCcCC
Confidence 9999999999999999999986433 3489999999986 67899999999999874
No 95
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.67 E-value=3.1e-16 Score=135.08 Aligned_cols=87 Identities=22% Similarity=0.202 Sum_probs=77.2
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCC----CCCCeEEEEEEEcccCccC
Q 009797 420 LVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP----PTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 420 L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~~l~i~V~d~~~~~~~ 492 (525)
++|+|++|+||+.. +.+||||+++++++++||++++++.||+|||.|+|.+... .....|.++|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc----
Confidence 47999999999863 5799999999999999999999999999999999999762 234689999999975
Q ss_pred CCCCccceEEEEEccccc
Q 009797 493 LHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~ 510 (525)
+++|++||++.|+|.++.
T Consensus 77 ~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 77 LGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred cCCCceeEEEEEEHHHhh
Confidence 678999999999999975
No 96
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.67 E-value=5.1e-16 Score=135.60 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=89.3
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC--e---EEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG--E---ERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~--~---~~k 450 (525)
+|+|.++++|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ + ++|
T Consensus 1 ~G~l~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08404 1 RGELLLSLCYQP-------------------------TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKK 55 (136)
T ss_pred CCeEEEEEEEeC-------------------------CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEc
Confidence 599999999975 467899999999999863 5789999999853 2 458
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhh
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
|++++++.||+|||+|.|.+..... ...|.|+|||++. ++++++||++.+++.+...+.+.|
T Consensus 56 T~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~----~~~~~~iG~~~~~~~~~~~~~~~w 118 (136)
T cd08404 56 THVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR----VTKNEVIGRLVLGPKASGSGGHHW 118 (136)
T ss_pred CccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC----CCCCccEEEEEECCcCCCchHHHH
Confidence 9999999999999999999875433 2479999999986 778999999999999843333333
No 97
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.67 E-value=4.5e-16 Score=132.64 Aligned_cols=93 Identities=23% Similarity=0.324 Sum_probs=78.2
Q ss_pred eEEEEEEeeec---CCC---CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc--
Q 009797 419 LLVVIVHEAQD---VEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI-- 490 (525)
Q Consensus 419 ~L~V~v~~a~~---L~~---~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~-- 490 (525)
+|.|+|++|++ |+. .+.+||||++.+++++.||++++++.||+|||+|.|.+.++ ...|.|+|||++...
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 48999999999 654 36899999999999999999999999999999999999864 358999999997510
Q ss_pred cCCCCCccceEEEEEccccccch
Q 009797 491 GLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
+-.++|++||++.+++.++..+.
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~ 101 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDR 101 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCC
Confidence 00147999999999999986553
No 98
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.66 E-value=2e-16 Score=137.02 Aligned_cols=108 Identities=28% Similarity=0.376 Sum_probs=88.2
Q ss_pred CCCceeEEEEEEEeccCCcccCc--CCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVEL 328 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i 328 (525)
+....+.|.|+|++|+||+..+. .+.+||||++++..+ +..++||++++++.||+|||+|.|.+... ....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 34567899999999999999883 355899999999764 33467999999999999999999998742 3567999
Q ss_pred EEEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 329 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
+|||++..+++++||++.+++.. .+...++|.+.
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 99999999999999999999975 33344455544
No 99
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.66 E-value=5.9e-16 Score=132.84 Aligned_cols=112 Identities=16% Similarity=0.288 Sum_probs=92.6
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEEE
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EERK 450 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~-----~~~k 450 (525)
|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ .+++
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~k 55 (123)
T cd08521 1 GEIEFSLSYNY-------------------------KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRK 55 (123)
T ss_pred CeEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceee
Confidence 88999999975 478899999999999753 4789999999843 3569
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
|++++++.||+|||+|.|.+..... ...|.|+|||++. ++++++||++.++|.++..+ .....||.
T Consensus 56 T~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~l~~~----~~~~~w~~ 122 (123)
T cd08521 56 TSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR----FGRNTFLGEVEIPLDSWDLD----SQQSEWYP 122 (123)
T ss_pred ccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC----CcCCceeeEEEEeccccccc----CCCccEEE
Confidence 9999999999999999999876432 3589999999975 67899999999999998533 34577874
No 100
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.66 E-value=4.5e-16 Score=135.57 Aligned_cols=101 Identities=20% Similarity=0.304 Sum_probs=85.6
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEe
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 451 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~kT 451 (525)
|+|.++++|.| ..|.|.|+|++|+||+.. +.+||||++++.+ ++++|
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT 55 (135)
T cd08410 1 GELLLSLNYLP-------------------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKT 55 (135)
T ss_pred CcEEEEEEECC-------------------------CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcC
Confidence 88999999987 468899999999999863 5799999999832 34699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
+++++|.||+|||+|.|.+...... ..|.|+|||++. .+++++||++.|+....
T Consensus 56 ~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 56 SCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV----KSSNDFIGRIVIGQYSS 110 (135)
T ss_pred ccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCcEEEEEEEcCccC
Confidence 9999999999999999999654333 379999999976 67899999999887664
No 101
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=5.8e-16 Score=130.82 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=75.9
Q ss_pred eEEEEEEeeecCCCC--CCCCcEEEEEECC-------eEEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcc
Q 009797 419 LLVVIVHEAQDVEGK--HHTNPYARILFRG-------EERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVS 487 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~--~~~dPyv~v~l~~-------~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~ 487 (525)
.|+|+|++|+||+.. +.+||||++++.| ++++|+++.+|.||+|||+|+|.+.... ....|.|.|+|++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 489999999999874 6789999999843 2458999999999999999999997531 2247999999997
Q ss_pred cCccCCCCCccceEEEEEccccccch
Q 009797 488 SRIGLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 488 ~~~~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
. .+.+++||++.+++.++..++
T Consensus 81 ~----~~~dd~IG~~~l~l~~~~~~~ 102 (120)
T cd08395 81 F----ARDDRLVGVTVLQLRDIAQAG 102 (120)
T ss_pred c----cCCCCEEEEEEEEHHHCcCCC
Confidence 4 577999999999999986554
No 102
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.66 E-value=5.1e-16 Score=135.64 Aligned_cols=102 Identities=21% Similarity=0.312 Sum_probs=87.0
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~k 450 (525)
.|+|.+++.|.| ..|.|.|+|++|+||+.. +.+||||++++.+ ..++
T Consensus 1 ~G~l~~~l~y~~-------------------------~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08402 1 LGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKK 55 (136)
T ss_pred CcEEEEEeEEcC-------------------------CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceee
Confidence 489999999987 478899999999999863 5799999999953 2458
Q ss_pred eeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
|++++++.||+|||.|.|.+...... ..|.|+|||++. +++|++||++.|++...
T Consensus 56 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 56 TTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR----IGKNDPIGKVVLGCNAT 111 (136)
T ss_pred ccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEECCccC
Confidence 99999999999999999998754332 379999999986 67899999999999874
No 103
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.66 E-value=5.8e-16 Score=134.63 Aligned_cols=100 Identities=32% Similarity=0.529 Sum_probs=86.8
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc----CCceeeeecCCCCCCeEeeEEEEEeeCC----CCCeEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDP----ESQAVE 327 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~----~~~~L~ 327 (525)
....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.
T Consensus 12 ~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 12 RASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred cCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 34568899999999999999888999999999997532 2457999999999999999999998652 256899
Q ss_pred EEEEecCCCCCCCccEEEEEECcccCCC
Q 009797 328 LAVYDWEQVGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 328 i~v~d~~~~~~d~~lG~~~i~L~~l~~~ 355 (525)
++|||++..+++++||++.++|+++..-
T Consensus 92 ~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 92 FTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 9999999999999999999999999854
No 104
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.66 E-value=6.8e-16 Score=131.77 Aligned_cols=94 Identities=24% Similarity=0.354 Sum_probs=81.6
Q ss_pred CCcceEEEEEEeeecCCC--CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 415 AGGGLLVVIVHEAQDVEG--KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~--~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
...|.|.|+|++|++|+. .+.+||||+++++++.+||++++++.||+|||+|.|........+.|.|+|||++.
T Consensus 25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~---- 100 (127)
T cd04032 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN---- 100 (127)
T ss_pred CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC----
Confidence 467899999999999985 35789999999999999999999999999999999985443345699999999986
Q ss_pred CCCCccceEEEEEccccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~ 512 (525)
++.|++||++.++|.....+
T Consensus 101 ~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCCCeeEEEEEEecCCcee
Confidence 67899999999999986533
No 105
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=6.4e-16 Score=135.03 Aligned_cols=103 Identities=20% Similarity=0.384 Sum_probs=87.3
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEEC--C---eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFR--G---EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~--~---~~~k 450 (525)
+|+|.++++|.+ ..+.|.|+|++|+||+. .+.+||||++++. + .+++
T Consensus 1 ~G~l~~sl~y~~-------------------------~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~k 55 (136)
T cd08405 1 RGELLLSLCYNP-------------------------TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKK 55 (136)
T ss_pred CcEEEEEEEEcC-------------------------CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCcccccc
Confidence 599999999986 47889999999999986 3579999999983 2 2458
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
|++++++.||+|||.|.|.+..... +..|.|+|||++. ++++++||++.+++.+..
T Consensus 56 T~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~lG~~~i~~~~~~ 112 (136)
T cd08405 56 TVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR----LSRNDLIGKIYLGWKSGG 112 (136)
T ss_pred CcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC----CCCCcEeEEEEECCccCC
Confidence 9999999999999999999864322 3589999999975 778999999999999853
No 106
>PLN03008 Phospholipase D delta
Probab=99.66 E-value=9.7e-16 Score=163.09 Aligned_cols=130 Identities=24% Similarity=0.457 Sum_probs=109.2
Q ss_pred ceeEEEEEEEeccCCcccCc------------------------------------------CCCCCcEEEEEEcCCcCC
Q 009797 258 PVGILHVKVVKAMNLKKKDL------------------------------------------LGASDPYVKLKITEDKLP 295 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~ 295 (525)
-.|.|.++|.+|++|+++|. .+++||||+|.+++.+
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r-- 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT-- 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc--
Confidence 46899999999999885321 2467999999997654
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCC
Q 009797 296 SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQN 375 (525)
Q Consensus 296 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~ 375 (525)
..||++++++.||+|||+|.|.+.++ ...|.|+|||+|.++ +++||++.+|++++..++....|+++..... +.
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp 163 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP 163 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence 36999999999999999999999886 458999999999986 5899999999999999988999999876432 23
Q ss_pred CceeeEEEEEEEEEecCCCC
Q 009797 376 EKSRGQLVVEFIYKPFKEED 395 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~ 395 (525)
.+..|+|+++++|.|.....
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 56678999999999987763
No 107
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=8e-16 Score=135.33 Aligned_cols=93 Identities=30% Similarity=0.565 Sum_probs=81.5
Q ss_pred EEEEEEEeccCCcccCcCC--------------CCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC-CCe
Q 009797 261 ILHVKVVKAMNLKKKDLLG--------------ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQA 325 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~ 325 (525)
.|.|+|++|++|+.+|..+ .+||||++.+++.+ .+|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999998765 48999999999999999999976443 568
Q ss_pred EEEEEEecCCCCCCCccEEEEEECcccCCCC
Q 009797 326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 326 L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
|.++|||++..++|++||++.+++.++....
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987654
No 108
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=1.4e-15 Score=130.90 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=87.9
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEEEee
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERKTK 452 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~---~~~~kT~ 452 (525)
.|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++. +...+|+
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~ 56 (125)
T cd08386 2 LGRIQFSVSYDF-------------------------QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETK 56 (125)
T ss_pred ccEEEEEEEECC-------------------------CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeee
Confidence 699999999976 467899999999999763 578999999993 3567999
Q ss_pred eecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 453 HVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~--~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+++++.||+|||.|.|.+... .....|.++|||++. ++++++||++.+++.++..+
T Consensus 57 v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~----~~~~~~iG~~~i~l~~l~~~ 114 (125)
T cd08386 57 VKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR----FSRNDPIGEVSLPLNKVDLT 114 (125)
T ss_pred eecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC----CcCCcEeeEEEEecccccCC
Confidence 999999999999999975321 123479999999986 67899999999999998643
No 109
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.65 E-value=3e-15 Score=129.72 Aligned_cols=118 Identities=25% Similarity=0.413 Sum_probs=93.1
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcC----------CceeeeecCCCCCCeE-eeEEEEEeeCCCCCeEEEE
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL----------PSKKTTVKHKNLNPEW-NEEYNFTVRDPESQAVELA 329 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----------~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~ 329 (525)
+..|++++|+||+ ++..|++||||++++.+... +.++|+++++++||+| ||+|.|.+. .++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4689999999998 67789999999999965432 2579999999999999 999999985 35789999
Q ss_pred EEecCCCCC---CCccEEEEEECcccCCCCC---eeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 330 VYDWEQVGK---HDKMGMNVVPLKELTPEEP---SVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 330 v~d~~~~~~---d~~lG~~~i~L~~l~~~~~---~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
|||++..++ +++||++.+++.++..+.. ...++++.+.. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999865443 7999999999999986642 34455543321 2467889988865
No 110
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.65 E-value=9.3e-16 Score=135.47 Aligned_cols=100 Identities=21% Similarity=0.231 Sum_probs=83.4
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
.|.|+|++|+||+.. +.+||||+++++++..+|+++.+ |.||+|||.|+|.+.++ ..+.+.|+|+|++. .+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~----~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG----PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC----CC
Confidence 488999999999763 57999999999999999999876 69999999999999774 45689999999975 66
Q ss_pred CCccceEEEEEccccccchhhhcccCCCC
Q 009797 495 PKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
+|++||++.|+|+++..+.........||
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~ 104 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWF 104 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceE
Confidence 89999999999999865433334456665
No 111
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.65 E-value=1.3e-15 Score=132.43 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=88.5
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-------eE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-------EE 448 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-------~~ 448 (525)
.|+|.+++.|.+ ..+.|.|+|++|++|+.. +.+||||++++.+ ..
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~ 56 (133)
T cd04009 2 YGVLTVKAYYRA-------------------------SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPT 56 (133)
T ss_pred ceEEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccc
Confidence 699999999975 367899999999999863 5799999999963 35
Q ss_pred EEeeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 449 RKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
+||+++++|.||+|||.|.|.+.... ....|.|+|||++. ++++++||++.++|.++.
T Consensus 57 ~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~----~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 57 PKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL----LGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred cccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC----CCCCcEeEEEEEeHHHCC
Confidence 69999999999999999999987532 23589999999975 678999999999999985
No 112
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=1.2e-15 Score=130.80 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=87.2
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEee
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK 452 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~---~~~kT~ 452 (525)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++.+.. +++||+
T Consensus 2 ~G~l~~sl~Y~~-------------------------~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTk 56 (124)
T cd08389 2 CGDLDVAFEYDP-------------------------SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTK 56 (124)
T ss_pred CEEEEEEEEECC-------------------------CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecc
Confidence 699999999986 477899999999999863 5789999988743 356999
Q ss_pred eecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 453 HVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 453 v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
++++ .||+|||+|.|. +..... +..|.++|+|++. ++++++||++.|+|.++..+
T Consensus 57 v~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 57 VQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER----MRKERLIGEKVVPLSQLNLE 113 (124)
T ss_pred cccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC----cccCceEEEEEEeccccCCC
Confidence 9888 999999999998 654322 3489999999975 78899999999999998543
No 113
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=9.5e-16 Score=134.85 Aligned_cols=90 Identities=20% Similarity=0.339 Sum_probs=79.5
Q ss_pred eEEEEEEeeecCCCCC-----------------CCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEE
Q 009797 419 LLVVIVHEAQDVEGKH-----------------HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHV 481 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~~-----------------~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i 481 (525)
.|.|+|++|+||+..+ .+||||++.+++++.||++++++.||+|||.|.|.+..+...+.|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999998632 58999999999999999999999999999999999876555679999
Q ss_pred EEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 482 EVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 482 ~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+|||++. .++|++||++.+++.++...
T Consensus 81 ~v~D~d~----~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 81 QIRDWDR----VGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EEEECCC----CCCCCEEEEEEEeHHHhccC
Confidence 9999986 67899999999999987544
No 114
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.65 E-value=7.4e-16 Score=131.39 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=83.3
Q ss_pred eEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCcc
Q 009797 419 LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVL 498 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~ 498 (525)
.|.|+|++|+||+.. .+||||+++++++..||+++++|.||+|||+|+|.+.+. ....|.++|||++. . .+++
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~----~-~~~~ 73 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK----A-KDDF 73 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC----C-cCce
Confidence 488999999999987 899999999999888999999999999999999998764 45689999999975 3 6899
Q ss_pred ceEEEEEccccccchh-hhcccCCCCC
Q 009797 499 FQFYFIFYLVHRFKQE-CCRMKNDPFR 524 (525)
Q Consensus 499 lG~v~I~l~~~~~~~~-~~~~~~~~~~ 524 (525)
||++.+++.++...+. .....+.||.
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~ 100 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYR 100 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEE
Confidence 9999999999854432 2233566763
No 115
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.64 E-value=7e-16 Score=134.28 Aligned_cols=109 Identities=32% Similarity=0.467 Sum_probs=89.8
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (525)
+....|.|.|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||+|||+|.|.+... ....|.++|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 345679999999999999999988999999999996532 3357999999999999999999998643 356899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
||++..+++++||++.+++... ++....|++++
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l 120 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCL 120 (133)
T ss_pred EeCCCCCCccEEEEEEEecCCC--CchHHHHHHHH
Confidence 9999988999999999999863 33344555543
No 116
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.64 E-value=1.3e-15 Score=132.75 Aligned_cols=106 Identities=25% Similarity=0.381 Sum_probs=90.5
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCC-cCCceeeeecCCCCCCeEeeEEEEEeeCC---------------CCCe
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------------ESQA 325 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------------~~~~ 325 (525)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999842 12347999999999999999999998765 4578
Q ss_pred EEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEeccccc
Q 009797 326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNM 368 (525)
Q Consensus 326 L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~ 368 (525)
|.|+|||++..+++++||++.+++.++........|++|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998889999999999999998776777888875543
No 117
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.64 E-value=2.1e-15 Score=131.15 Aligned_cols=92 Identities=24% Similarity=0.389 Sum_probs=82.8
Q ss_pred CCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009797 415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 491 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 491 (525)
...|.|+|+|++|++|+.. +.+||||+++++++.++|++++++.||.|||.|+|.+.+. ..+.|.|+|||++.
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~--- 87 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF--- 87 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC---
Confidence 4679999999999999863 5799999999999999999999999999999999999864 45689999999985
Q ss_pred CCCCCccceEEEEEcccccc
Q 009797 492 LLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 492 ~~~~d~~lG~v~I~l~~~~~ 511 (525)
++.|++||++.+++.++..
T Consensus 88 -~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 88 -FSPDDFLGRTEIRVADILK 106 (136)
T ss_pred -CCCCCeeEEEEEEHHHhcc
Confidence 6789999999999999865
No 118
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.64 E-value=1.6e-15 Score=132.12 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=86.4
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEe
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 451 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~kT 451 (525)
|+|.+++.|.| ..+.|+|+|++|++|+.. +.+||||++++.. .+++|
T Consensus 1 g~l~~~~~y~~-------------------------~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT 55 (134)
T cd08403 1 GELMFSLCYLP-------------------------TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKT 55 (134)
T ss_pred CeEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecC
Confidence 78999999987 478899999999999873 5789999999842 24589
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
++++++.||+|||.|.|.+...... ..|.|+|||++. ++++++||++.|++.....
T Consensus 56 ~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~IG~~~l~~~~~~~ 112 (134)
T cd08403 56 SVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR----VGHNELIGVCRVGPNADGQ 112 (134)
T ss_pred CcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCceeEEEEECCCCCCc
Confidence 9999999999999999998653232 379999999986 6789999999999885433
No 119
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.63 E-value=1.3e-15 Score=127.73 Aligned_cols=100 Identities=22% Similarity=0.294 Sum_probs=83.7
Q ss_pred EEEEEEeeecCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCcc-cceEEEEecCCCC-CCeEEEEEEEcccCccCC
Q 009797 420 LVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRW-EEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 420 L~V~v~~a~~L~~~----~~~dPyv~v~l~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~ 493 (525)
|.|+|++|++|+.. +.+||||+++++++++||++++++.||+| ||.|.|.+..... ++.|.|+|||++. +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~----~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT----Y 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC----C
Confidence 57999999999753 46899999999998899999999999999 9999999986533 3589999999975 6
Q ss_pred CCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 494 HPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+++++||++.+++.++... ..-...+.||.
T Consensus 77 ~~~~~iG~~~~~l~~l~~~-~~~~~~~~w~~ 106 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLK-DSVSQISGWFP 106 (110)
T ss_pred CCCCceEEEEEeHHHhccc-CCccccCCeEE
Confidence 7899999999999998542 22334777874
No 120
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=1.1e-15 Score=133.43 Aligned_cols=108 Identities=29% Similarity=0.438 Sum_probs=88.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC--CcCCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 330 (525)
+....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4456789999999999999988889999999999843 23345689999999999999999999753 2356899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++..+++++||++.+++.+. +...+.|.++
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~ 121 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDM 121 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHH
Confidence 9999999999999999999886 3233444444
No 121
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.63 E-value=1.5e-15 Score=129.60 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=85.9
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC--CcCCceeeeecCCCC-CCeEeeEEEEEeeCCC-CCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNL-NPEWNEEYNFTVRDPE-SQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~t~-nP~w~e~f~f~v~~~~-~~~L~i~v 330 (525)
+....|.|+|+|++|+||++.+..+.+||||+|++-. .+..++||+++++|+ ||.|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 4456799999999999999876567789999999853 334568999999996 6999999999997533 34688899
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEe
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 363 (525)
||++..+++++||++.++.+..... ..++|.+
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~~-~~~hW~~ 120 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSSE-AVEQWKD 120 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCch-hhhhHHH
Confidence 9999889999999999999874322 3344444
No 122
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.63 E-value=2.4e-15 Score=126.44 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=76.3
Q ss_pred ceEEEEEEeeecCCC---C-CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccc
Q 009797 418 GLLVVIVHEAQDVEG---K-HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSS 488 (525)
Q Consensus 418 g~L~V~v~~a~~L~~---~-~~~dPyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~~ 488 (525)
|.|+|+|++|++|+. . +.+||||++++.+ ..++|+++++|.||+|||.|.|.+.... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999986 2 5789999999854 3569999999999999999999886532 23589999999986
Q ss_pred CccCCCCCccceEEEEEccccc
Q 009797 489 RIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 489 ~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
++.|++||++.+++.++.
T Consensus 81 ----~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 81 ----FTADDRLGRVEIDLKELI 98 (111)
T ss_pred ----CCCCCcceEEEEEHHHHh
Confidence 678999999999999874
No 123
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=1.7e-15 Score=132.06 Aligned_cols=110 Identities=24% Similarity=0.395 Sum_probs=89.8
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc---CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEE
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVEL 328 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i 328 (525)
.+....+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 3556789999999999999999988999999999996432 234699999999999999999999974 34568999
Q ss_pred EEEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 329 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
+|||++..+++++||++.+++.....+ ..++|..+
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~ 123 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEM 123 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHH
Confidence 999999999999999999988755432 22344444
No 124
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.63 E-value=2.4e-15 Score=128.35 Aligned_cols=99 Identities=28% Similarity=0.425 Sum_probs=86.3
Q ss_pred EEeccCCcccCcCCCCCcEEEEEEcCCc----CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCC----CC
Q 009797 266 VVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VG 337 (525)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~----~~ 337 (525)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4799999999988999999999997653 123699999999999999999998765556789999999997 78
Q ss_pred CCCccEEEEEECcccCCCCCeeEEEec
Q 009797 338 KHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 338 ~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
++++||++.++++++..+.....++.|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988777777776
No 125
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.63 E-value=1.8e-15 Score=128.86 Aligned_cols=96 Identities=25% Similarity=0.338 Sum_probs=80.5
Q ss_pred ceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
|.|.|+|++|+||+.. +.+||||+++++++.++|+++++ +.||+|||.|.|.+..+ ..+.|.|+|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK----R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC----C
Confidence 6799999999999863 57999999999998889998764 79999999999999874 45689999999975 4
Q ss_pred CCCccceEEEEEccccccchhhhcccCCCC
Q 009797 494 HPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
+ |++||++.+++.++..+. ....||
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~----~~~~w~ 100 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEG----EFDDWY 100 (118)
T ss_pred C-CcceEEEEEecHHHhhcC----CCCCcE
Confidence 4 899999999999975432 245665
No 126
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=5.9e-15 Score=126.72 Aligned_cols=118 Identities=26% Similarity=0.408 Sum_probs=93.4
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
..|.|+|.+|+ |...+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555788999999999865 24799999999999999999999853 57899999999999999
Q ss_pred CccEEEEEECcccCCCCC-----eeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 340 DKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
++||++.++|.++..... ...++++.+.. ..+....|+|.+.+
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN----KGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC----CCcceeeeeEEEEe
Confidence 999999999999886532 22355553211 11357789998875
No 127
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.63 E-value=4e-15 Score=123.46 Aligned_cols=83 Identities=27% Similarity=0.459 Sum_probs=70.4
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec------
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW------ 333 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~------ 333 (525)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|.|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 568999999997532 345799999999999999999999963 67999999998
Q ss_pred -CCCCCCCccEEEEEECcc
Q 009797 334 -EQVGKHDKMGMNVVPLKE 351 (525)
Q Consensus 334 -~~~~~d~~lG~~~i~L~~ 351 (525)
|..++|+++|++.+.|+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 456789999888887753
No 128
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=8.1e-16 Score=134.37 Aligned_cols=108 Identities=35% Similarity=0.560 Sum_probs=88.2
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC--CcCCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v 330 (525)
+....|.|+|+|++|++|+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.... ...|.++|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4456799999999999999999889999999999953 2334568999999999999999999986432 34799999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++..++|++||++.+++.... .....|.++
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~~--~~~~~W~~~ 121 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNATG--AELRHWSDM 121 (136)
T ss_pred EeCCCCCCCceeEEEEECCccCC--hHHHHHHHH
Confidence 99999999999999999998642 233444444
No 129
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=1.7e-15 Score=127.45 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=84.2
Q ss_pred cceEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCC---CCeEEEEEEEcccCccCC
Q 009797 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT---NDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~---~~~l~i~V~d~~~~~~~~ 493 (525)
...|+|+|++|+||+ .+.+||||++++++++++|++++++.||.|||.|.|.+..+.. +..|.|+|||++. +
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~----~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS----L 77 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc----c
Confidence 457899999999999 5789999999999999999999999999999999999865421 3589999999975 6
Q ss_pred CCCccceEEEEEccccccchhhhcccCCCC
Q 009797 494 HPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
++|++||++.++|.++..+..+. .-..||
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~-~~~~w~ 106 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHA-FLRKWL 106 (111)
T ss_pred ccCCccEEEEECCccccCCCCCc-ceEEEE
Confidence 77999999999999986554332 334444
No 130
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.62 E-value=2.3e-15 Score=130.96 Aligned_cols=89 Identities=15% Similarity=0.204 Sum_probs=76.5
Q ss_pred CcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~ 486 (525)
..+.|.|+|++|+||+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 478999999999999873 5789999999964 24599999999999999999999875433 35899999999
Q ss_pred ccCccCCCCCccceEEEEEccc
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
+. .+++++||++.+++.+
T Consensus 91 d~----~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 91 DI----GKSNDYIGGLQLGINA 108 (133)
T ss_pred CC----CCCccEEEEEEEecCC
Confidence 75 5789999999999986
No 131
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.62 E-value=4.4e-16 Score=136.00 Aligned_cols=107 Identities=34% Similarity=0.461 Sum_probs=87.8
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY 331 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~ 331 (525)
....+.|.|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 34578899999999999999988999999999985432 2346899999999999999999998642 3457899999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|++..+++++||++.+++.. .+.....|.++
T Consensus 91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l 121 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEV 121 (136)
T ss_pred ECCCCCCCccEEEEEECCcC--CCchHHHHHHH
Confidence 99999999999999999998 23344445544
No 132
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=3.1e-15 Score=125.80 Aligned_cols=98 Identities=26% Similarity=0.337 Sum_probs=83.1
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC----CCeEEEEEEecCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ 335 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~ 335 (525)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.++|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 46899999999998 4789999999999754 58999999999999999999986432 4689999999999
Q ss_pred CCCCCccEEEEEECcccCCCCCe---eEEEec
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPS---VKTLDL 364 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~---~~~~~l 364 (525)
.+++++||++.++|+++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 88999999999999999766433 345554
No 133
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.62 E-value=3e-15 Score=127.04 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=79.5
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
+++|+|++|+||+.. +.+||||++++++++++|+++++|.||.|||.|+|.+... ..+.|.|+|||++. +++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT----GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC----CCC
Confidence 478999999999874 5789999999999999999999999999999999999865 45799999999975 678
Q ss_pred CccceEEEEEccccccc
Q 009797 496 KVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~ 512 (525)
|++||++.++|.++..+
T Consensus 76 ~~~iG~~~~~l~~l~~~ 92 (116)
T cd08376 76 DEFIGRCEIDLSALPRE 92 (116)
T ss_pred CCeEEEEEEeHHHCCCC
Confidence 99999999999997654
No 134
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=2.4e-15 Score=126.33 Aligned_cols=102 Identities=25% Similarity=0.391 Sum_probs=85.6
Q ss_pred cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCC-
Q 009797 277 LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE- 355 (525)
Q Consensus 277 ~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~- 355 (525)
.+|.+||||++++++.. .++|++++++.||.|||+|.|.+.+...+.|.|+|||++.. ++++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998643 26899999999999999999999876677899999999988 899999999999998643
Q ss_pred CCeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 356 EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
.....|++|. +...|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLS----------GNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECC----------CCCCCEEEEEEEEecC
Confidence 3346777762 2457999999999883
No 135
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.62 E-value=2.5e-15 Score=130.87 Aligned_cols=98 Identities=27% Similarity=0.477 Sum_probs=81.6
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (525)
+....|.|.|+|++|++|+..+..|.+||||++++.+. ....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 34456899999999999999998899999999998432 23447899999999999999999998532 234799999
Q ss_pred EecCCCCCCCccEEEEEECccc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKEL 352 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l 352 (525)
||++..+++++||++.+.....
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccC
Confidence 9999999999999998765443
No 136
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.62 E-value=3.7e-15 Score=127.82 Aligned_cols=108 Identities=31% Similarity=0.490 Sum_probs=90.4
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC---CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~ 329 (525)
+....+.|+|+|++|++|+..+..+.+||||++++.+. .....+|++++++.||.|||+|.|..... ....+.++
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 34456889999999999999888889999999998532 23457999999999999999999963322 35689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEe
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 363 (525)
|||++.. ++++||++.++++++..++.+++++.
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999987 89999999999999998887777653
No 137
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.62 E-value=3.7e-15 Score=128.82 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=79.6
Q ss_pred ceEEEEEEeeecCCC-----CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 418 GLLVVIVHEAQDVEG-----KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 418 g~L~V~v~~a~~L~~-----~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
|.|+|+|++|+||+. .+.+||||++++++++++|++++++.||+|||.|+|.+.+. ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC----
Confidence 689999999999975 35689999999999999999999999999999999999873 45799999999985
Q ss_pred CCCCccceEEEEEcccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~ 511 (525)
.+.+++||++.+++.++..
T Consensus 76 ~~~~~~lG~~~i~l~~~~~ 94 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFA 94 (128)
T ss_pred CCCCCcceEEEEEHHHhhc
Confidence 6789999999999999853
No 138
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.62 E-value=2.2e-15 Score=130.02 Aligned_cols=88 Identities=25% Similarity=0.341 Sum_probs=77.1
Q ss_pred eEEEEEEeeecCCC---CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCC--CCeEEEEEEEcccCccCC
Q 009797 419 LLVVIVHEAQDVEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT--NDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 419 ~L~V~v~~a~~L~~---~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~l~i~V~d~~~~~~~~ 493 (525)
.|+|+|++|+||+. .+.+||||++++++++++|++++++.||+|||.|.|.+.++.. ...|.|+|||++. +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~----~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR----S 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC----C
Confidence 48999999999985 3579999999999999999999999999999999999986422 3589999999875 5
Q ss_pred C-CCccceEEEEEccccc
Q 009797 494 H-PKVLFQFYFIFYLVHR 510 (525)
Q Consensus 494 ~-~d~~lG~v~I~l~~~~ 510 (525)
+ .|++||++.+++.++.
T Consensus 77 ~~~d~~lG~v~i~l~~l~ 94 (127)
T cd04022 77 GRRRSFLGRVRISGTSFV 94 (127)
T ss_pred cCCCCeeeEEEEcHHHcC
Confidence 4 7999999999999986
No 139
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.61 E-value=1.8e-15 Score=131.77 Aligned_cols=108 Identities=33% Similarity=0.527 Sum_probs=87.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (525)
+....|.|+|+|++|++|+..+..|.+||||++++... ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 34567999999999999999998899999999998532 33457899999999999999999998542 235699999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++..+++++||++.+++... +.....|.++
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred EECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 9999999999999999998733 3333444444
No 140
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.61 E-value=5.2e-15 Score=126.97 Aligned_cols=104 Identities=16% Similarity=0.296 Sum_probs=87.9
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC---eEEEee
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG---EERKTK 452 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~---~~~kT~ 452 (525)
|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. +.++|+
T Consensus 1 G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~ 55 (123)
T cd08390 1 GRLWFSVQYDL-------------------------EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSK 55 (123)
T ss_pred CEEEEEEEECC-------------------------CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEee
Confidence 88999999976 477899999999999863 4689999999842 456899
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 453 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+++++.||+|||.|.|.+..... ...|.|+|||.+. .+++++||++.++|.++...
T Consensus 56 v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~L~~l~~~ 112 (123)
T cd08390 56 VKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR----FSRHCIIGHVLFPLKDLDLV 112 (123)
T ss_pred eEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc----CCCCcEEEEEEEeccceecC
Confidence 99999999999999999875422 2489999999975 66899999999999998543
No 141
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.61 E-value=2.3e-15 Score=132.22 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=80.1
Q ss_pred eEEEEEEeeecCCCC-CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecC-----------C--CC-CCe
Q 009797 419 LLVVIVHEAQDVEGK-HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEE-----------P--PT-NDR 478 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~-~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~-----------~--~~-~~~ 478 (525)
.|.|+|++|+||+.. +.+||||++++.+ .+++|+++++|.||+|||.|+|.+.. + .. ...
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 488999999999873 5799999999977 46699999999999999999999951 1 11 237
Q ss_pred EEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 479 LHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 479 l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
|.|.|||++. +++|++||++.|++.++..+. .....||.
T Consensus 81 L~i~V~d~~~----~~~ddfLG~v~i~l~~l~~~~---~~~~~W~~ 119 (148)
T cd04010 81 LRVDLWHASM----GGGDVFLGEVRIPLRGLDLQA---GSHQAWYF 119 (148)
T ss_pred EEEEEEcCCC----CCCCceeEEEEEecccccccC---CcCcceee
Confidence 9999999975 678999999999999986541 23466763
No 142
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=5.5e-15 Score=129.47 Aligned_cols=90 Identities=23% Similarity=0.312 Sum_probs=81.2
Q ss_pred ceEEEEEEeeecCCCC--CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 418 GLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
|.|.|+|++|+||+.. +.+||||++++++++++|++++++.||+|||.|.|.+.++ ...|.|+|||++. ++.
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~----~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT----FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC----CCC
Confidence 7899999999999763 5789999999999999999999999999999999999875 5689999999986 788
Q ss_pred CccceEEEEEccccccch
Q 009797 496 KVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~~ 513 (525)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999985543
No 143
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.61 E-value=1.4e-14 Score=126.07 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=99.8
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (525)
.-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|.|.|..... ...+.|.||+.+..
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~ 79 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCc
Confidence 34578999999999999765 8999999998664 6999999999999999999976443 46799999876532
Q ss_pred C----CCCccEEEEEECcccCCCCCeeEEEecccccccCC---CCCCceeeEEEEEEEEEec
Q 009797 337 G----KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND---GQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 337 ~----~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~l~l~l~~~p~ 391 (525)
. ++++||.+.||+.++..+...+.|+++........ .......+.|+++++|.+.
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 2 57899999999999998888889998864321110 0012345799999999985
No 144
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.61 E-value=6.1e-15 Score=126.49 Aligned_cols=88 Identities=28% Similarity=0.408 Sum_probs=78.5
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
+|+|+|++|+||+.. +.+||||++++++...+|+++++|.||+|||.|.|.+... ....|.|+|||++. ++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~----~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL----VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC----CCC
Confidence 489999999999863 4689999999999999999999999999999999999875 35689999999975 678
Q ss_pred CccceEEEEEcccccc
Q 009797 496 KVLFQFYFIFYLVHRF 511 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~ 511 (525)
+++||++.+++.++..
T Consensus 76 ~~~iG~~~~~l~~l~~ 91 (123)
T cd04025 76 NDFLGKVVFSIQTLQQ 91 (123)
T ss_pred CcEeEEEEEEHHHccc
Confidence 9999999999999854
No 145
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.59 E-value=6.6e-15 Score=125.91 Aligned_cols=88 Identities=24% Similarity=0.356 Sum_probs=78.4
Q ss_pred ceEEEEEEeeecCCCC---------CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009797 418 GLLVVIVHEAQDVEGK---------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~---------~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 488 (525)
|.|.|+|++|+||+.. +.+||||+++++++.++|++++++.||+|||.|+|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 6799999999999853 3689999999999889999999999999999999999764 45799999999975
Q ss_pred CccCCCCCccceEEEEEcccccc
Q 009797 489 RIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 489 ~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
. ++++||++.+++.++..
T Consensus 80 ----~-~~~~iG~~~i~l~~l~~ 97 (121)
T cd08391 80 ----D-KDDFLGRLSIDLGSVEK 97 (121)
T ss_pred ----C-CCCcEEEEEEEHHHhcc
Confidence 4 78999999999999864
No 146
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=1.2e-14 Score=126.06 Aligned_cols=109 Identities=23% Similarity=0.314 Sum_probs=91.2
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEECC-----eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~-----~~~k 450 (525)
+|+|++++.|. .+.|.|+|++|+||+. .+.+||||++.+.+ ..++
T Consensus 1 ~g~~~~~~~~~---------------------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~r 53 (131)
T cd04026 1 RGRIYLKISVK---------------------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQK 53 (131)
T ss_pred CcEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceec
Confidence 58999999874 3789999999999986 35789999999964 4679
Q ss_pred eeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
|++++++.||.|||+|.|.+........|.|+|||++. .+.+++||++.+++.++... ....||
T Consensus 54 T~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~~~l~~l~~~-----~~~~w~ 117 (131)
T cd04026 54 TKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR----TTRNDFMGSLSFGVSELIKM-----PVDGWY 117 (131)
T ss_pred ceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC----CCCcceeEEEEEeHHHhCcC-----ccCceE
Confidence 99999999999999999998865445689999999975 66899999999999998532 455665
No 147
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.59 E-value=1e-14 Score=125.45 Aligned_cols=90 Identities=20% Similarity=0.232 Sum_probs=76.8
Q ss_pred cceEEEEEEeeecCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
...|+|+|++|+||+..+.+||||++.+++.. .+|++ +++.||.|||.|.|.+..+ ..+.+.|.|+|++. .++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAK----RSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCC----CCC
Confidence 34699999999999998889999999998855 58887 4689999999999987654 33579999999975 678
Q ss_pred CccceEEEEEccccccc
Q 009797 496 KVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~ 512 (525)
|++||++.|+|.++..+
T Consensus 77 d~~iG~v~i~l~~l~~~ 93 (126)
T cd08400 77 DSEIAEVTVQLSKLQNG 93 (126)
T ss_pred CCeEEEEEEEHhHccCC
Confidence 99999999999998654
No 148
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.59 E-value=1.5e-15 Score=132.42 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=90.1
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 330 (525)
+....+.|.|+|++|+||+..+ .+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3445688999999999999988 7889999999986542 235689999999999999999999863 3356899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
||++..+++++||++.++......+....+|.++.
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 99999999999999999977666555555565553
No 149
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.4e-14 Score=123.38 Aligned_cols=96 Identities=20% Similarity=0.339 Sum_probs=82.6
Q ss_pred ceEEEEEEeeecCCCC---CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
|.|.|+|++|+||+.. +.+||||+++++++ .++|++++++.||+|||.|.|.+... .+.|.|+|||++. +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~----~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK----V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC----C
Confidence 6899999999999873 57999999999874 56999999999999999999998764 4689999999986 6
Q ss_pred CCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 494 HPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
++|++||++.+++.++..+ .++.||.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-----~~~~~~~ 100 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-----NEDGKYV 100 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-----CCCceEE
Confidence 7899999999999998544 5577773
No 150
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.58 E-value=1.3e-14 Score=124.05 Aligned_cols=88 Identities=19% Similarity=0.384 Sum_probs=77.6
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
.|+|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||.|.|.+.+. .+.|.|+|||++. ++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~----~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR----GL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC----CC
Confidence 378999999999863 5799999999988 467999999999999999999998763 4689999999986 67
Q ss_pred CCccceEEEEEccccccc
Q 009797 495 PKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~~ 512 (525)
+|++||++.+++.++..+
T Consensus 75 ~~~~iG~~~~~l~~l~~~ 92 (121)
T cd04042 75 TDDFMGSAFVDLSTLELN 92 (121)
T ss_pred CCcceEEEEEEHHHcCCC
Confidence 899999999999998644
No 151
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.58 E-value=1.4e-14 Score=125.71 Aligned_cols=105 Identities=36% Similarity=0.574 Sum_probs=90.4
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC-CCCeEEEEEEecCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP-ESQAVELAVYDWEQV 336 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~~~ 336 (525)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 22357999999999999999999998753 256899999999988
Q ss_pred CCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 337 GKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
+++++||++.+++.++... ....|+++.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~ 120 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLL 120 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence 8999999999999999865 566777764
No 152
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.57 E-value=1.8e-14 Score=122.91 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=75.8
Q ss_pred EEEEEEeeecCCCC----CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 420 LVVIVHEAQDVEGK----HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 420 L~V~v~~a~~L~~~----~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
|.|.|.+|+||+.. +.+||||+++++++ ..+|+++++|.||+|||.|+|.+.+. ...|.|.|||++. ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~----~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV----LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC----CC
Confidence 67899999999874 36899999999876 46999999999999999999999863 3689999999986 77
Q ss_pred CCccceEEEEEcccccc
Q 009797 495 PKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~ 511 (525)
+|++||.+.++++++..
T Consensus 76 ~~~~iG~~~i~l~~l~~ 92 (121)
T cd08401 76 RDSVIGKVAIKKEDLHK 92 (121)
T ss_pred CCceEEEEEEEHHHccC
Confidence 89999999999999864
No 153
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.57 E-value=1.8e-14 Score=125.50 Aligned_cols=100 Identities=20% Similarity=0.299 Sum_probs=86.4
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCe-----EEEe
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----ERKT 451 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~-----~~kT 451 (525)
|+|.+.++|.+ ..+.|.|+|++|+||+.. +.+||||++++.+. .++|
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T 55 (134)
T cd00276 1 GELLLSLSYLP-------------------------TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKT 55 (134)
T ss_pred CeEEEEEEeeC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecC
Confidence 88999999986 467899999999999863 57899999999653 4589
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccc
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
++++++.||.|||+|.|.+..... ...|.|+|||.+. .+++++||++.+++.+
T Consensus 56 ~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 56 SVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS----VGRNEVIGQVVLGPDS 109 (134)
T ss_pred cceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC----CCCCceeEEEEECCCC
Confidence 999999999999999999876432 3589999999975 5689999999999998
No 154
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.57 E-value=1.8e-14 Score=120.99 Aligned_cols=96 Identities=27% Similarity=0.513 Sum_probs=79.8
Q ss_pred EEEEeccCCcccCcCCCCCcEEEEEEcCCc---CCceeeeecCCCCCCeEeeEEEEEeeCCC----CCeEEEEEEecCCC
Q 009797 264 VKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQV 336 (525)
Q Consensus 264 V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~~ 336 (525)
+-.++|++|+..+..|.+||||++++.+.. ...++|+++++++||+|| +|.|.+.... .+.|.++|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 345799999999999999999999987542 234799999999999999 6888764322 57899999999999
Q ss_pred CCCCccEEEEEECcccCCCCCeeE
Q 009797 337 GKHDKMGMNVVPLKELTPEEPSVK 360 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~~~~~~~~ 360 (525)
++|++||++.++++++..+...+.
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceE
Confidence 999999999999999986654443
No 155
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=4.8e-14 Score=119.79 Aligned_cols=114 Identities=24% Similarity=0.389 Sum_probs=86.4
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEEEecCCCCCC
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVGKH 339 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~~~~d 339 (525)
|+|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999876 789999999998643 368999888 99999999999997543 34677888888766556
Q ss_pred CccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 340 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
..+|.+ ++..+..+.....|+++.+. . ......|+|++++.|
T Consensus 76 ~~~g~v--~l~~~~~~~~~~~w~~L~~~----~-~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKV--ALSKLDLGQGKDEWFPLTPV----D-PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEE--EecCcCCCCcceeEEECccC----C-CCCCcCceEEEEEEC
Confidence 566654 55555556667788887432 1 124679999999876
No 156
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.57 E-value=3.9e-15 Score=129.74 Aligned_cols=108 Identities=33% Similarity=0.451 Sum_probs=90.5
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVY 331 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~ 331 (525)
....+.|.|+|++|++|+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 10 LPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 34568999999999999998888899999999997542 23468999999999999999999987542 578999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
|++..+++++||++.+++++ .+.....|+++.
T Consensus 90 d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 121 (134)
T cd00276 90 DKDSVGRNEVIGQVVLGPDS--GGEELEHWNEML 121 (134)
T ss_pred ecCCCCCCceeEEEEECCCC--CCcHHHHHHHHH
Confidence 99988899999999999999 444556666654
No 157
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.57 E-value=1.4e-14 Score=123.44 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=76.4
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
.|.|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||+|+|.+... ..+.|.|+|||++.
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~---- 75 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY---- 75 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC----
Confidence 378999999999864 5789999999964 457999999999999999999999865 44689999999975
Q ss_pred CCCCccceEEEEEccccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~ 512 (525)
+ +|++||++.+++.++..+
T Consensus 76 ~-~~~~iG~~~~~l~~l~~g 94 (119)
T cd04036 76 V-MDDHLGTVLFDVSKLKLG 94 (119)
T ss_pred C-CCcccEEEEEEHHHCCCC
Confidence 5 799999999999998655
No 158
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.57 E-value=2.5e-14 Score=121.95 Aligned_cols=91 Identities=20% Similarity=0.312 Sum_probs=80.2
Q ss_pred ceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
|.|.|+|++|+||+.. +.+||||++++++...+|++++++.||.|||+|.|.+.+ ..+.+.|+|||++. .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~----~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDK----DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCC----CC
Confidence 6799999999999863 578999999999988999999999999999999999875 34789999999975 57
Q ss_pred CCccceEEEEEccccccchh
Q 009797 495 PKVLFQFYFIFYLVHRFKQE 514 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~~~~ 514 (525)
.+++||++.+++.++..+.+
T Consensus 75 ~~~~iG~~~~~l~~~~~~~~ 94 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNGER 94 (119)
T ss_pred CCceeeEEEEEHHHCCCCCc
Confidence 89999999999999865543
No 159
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.55 E-value=2.2e-15 Score=146.38 Aligned_cols=106 Identities=32% Similarity=0.541 Sum_probs=90.4
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEecC
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (525)
....|+|+|.+|+||.++|.+|.|||||++.+-++. ..+++|++++.++||+|||+|.|.+.... ...|.++|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 456899999999999999999999999999996543 34578999999999999999999997443 568999999999
Q ss_pred CCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
+.+++||+|..++.+++|.... ..-|+.+
T Consensus 258 rTsRNDFMGslSFgisEl~K~p-~~GWyKl 286 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAP-VDGWYKL 286 (683)
T ss_pred ccccccccceecccHHHHhhcc-hhhHHHH
Confidence 9999999999999999998663 3334444
No 160
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.55 E-value=9.1e-14 Score=120.07 Aligned_cols=119 Identities=29% Similarity=0.417 Sum_probs=93.1
Q ss_pred EEEEEEEeccCCcccC--cCCCCCcEEEEEEcCCc---CCceeeeecCCCC-CCeEeeEEEEEeeCCCCCeEEEEEEecC
Q 009797 261 ILHVKVVKAMNLKKKD--LLGASDPYVKLKITEDK---LPSKKTTVKHKNL-NPEWNEEYNFTVRDPESQAVELAVYDWE 334 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~-nP~w~e~f~f~v~~~~~~~L~i~v~d~~ 334 (525)
.|+|+|++|++|+..+ ..+.+||||++++.+.. ....+|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996432 2457899887765 9999999999998766668999999999
Q ss_pred CCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
.. ++++||++.++++++..+. .++++... . ......|.|.+.+++
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~---~--~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS---K--GEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC---C--CCCCcceeEEEEEEE
Confidence 87 8999999999999996542 33444221 1 112456888888765
No 161
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.54 E-value=4.4e-14 Score=122.97 Aligned_cols=99 Identities=24% Similarity=0.326 Sum_probs=82.2
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCe-------EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGE-------ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~-------~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 488 (525)
.|+|+|++|+||+.. +.+||||++++.+. .++|+++++|.||+|||.|.|.+... ...|.++|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence 488999999999874 57999999999765 46999999999999999999998653 4689999999976
Q ss_pred CccCCCCCccceEEEEEccccccchhh--hcccCCCC
Q 009797 489 RIGLLHPKVLFQFYFIFYLVHRFKQEC--CRMKNDPF 523 (525)
Q Consensus 489 ~~~~~~~d~~lG~v~I~l~~~~~~~~~--~~~~~~~~ 523 (525)
++.+++||++.+++.++..+.+. +.....||
T Consensus 79 ----~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~ 111 (133)
T cd04033 79 ----LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDY 111 (133)
T ss_pred ----CCCCCeeEEEEEEHHHCCCcCccccccccchhe
Confidence 67899999999999998755432 34456666
No 162
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.54 E-value=4.4e-14 Score=121.60 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=75.6
Q ss_pred EEEEEEeeecCCC-CCCCCcEEEEEECC--eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCC
Q 009797 420 LVVIVHEAQDVEG-KHHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPK 496 (525)
Q Consensus 420 L~V~v~~a~~L~~-~~~~dPyv~v~l~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d 496 (525)
|.|+|++|+||+. .+.+||||++++++ ++++|+++++|.||+|||.|.|.+.. ..+.|.|+|||++. .++|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~----~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGK----KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCC----CCCC
Confidence 5799999999976 35799999999974 56799999999999999999999864 35689999999986 6789
Q ss_pred ccceEEEEEccccccc
Q 009797 497 VLFQFYFIFYLVHRFK 512 (525)
Q Consensus 497 ~~lG~v~I~l~~~~~~ 512 (525)
++||++.+++.++..+
T Consensus 75 ~~lG~~~i~l~~l~~~ 90 (126)
T cd08678 75 KFLGLAIVPFDELRKN 90 (126)
T ss_pred ceEEEEEEeHHHhccC
Confidence 9999999999998654
No 163
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.54 E-value=5.5e-14 Score=122.10 Aligned_cols=88 Identities=23% Similarity=0.308 Sum_probs=77.3
Q ss_pred cceEEEEEEeeecCCCC-------------CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009797 417 GGLLVVIVHEAQDVEGK-------------HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~-------------~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~ 482 (525)
.|.|+|+|++|+||... +.+||||++.++++. .+|+++++|.||.|||.|+|.+.+ ...|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 68999999999999753 358999999999876 599999999999999999999973 3689999
Q ss_pred EEEcccCccCCCCCccceEEEEEcccccc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
|+|++. ++.+++||++.++|.++..
T Consensus 80 v~d~~~----~~~~~~iG~~~i~l~~l~~ 104 (132)
T cd04014 80 VFHDAA----IGPDDFVANCTISFEDLIQ 104 (132)
T ss_pred EEeCCC----CCCCceEEEEEEEhHHhcc
Confidence 999875 6789999999999999865
No 164
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.53 E-value=1.3e-13 Score=118.29 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=85.7
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~k 450 (525)
.|+|++++.|.+ ..+.|.|+|++|++|+.. +.+||||++++.+ ..++
T Consensus 1 ~G~~~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~r 55 (123)
T cd04035 1 LGTLEFTLLYDP-------------------------ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLR 55 (123)
T ss_pred CcEEEEEEEEeC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCcee
Confidence 489999999986 367899999999999863 5789999999842 3569
Q ss_pred eeeecCCCCCcccceEEEEecCC-C-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEP-P-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
|++++++.||+|||.|.|..... . ....+.|+|||++. + .+++||++.+++.++..+
T Consensus 56 T~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~----~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 56 TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR----F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred eeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC----c-CCeeEEEEEEEcccCCCC
Confidence 99999999999999999963321 1 23589999999975 5 789999999999997543
No 165
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.53 E-value=8.2e-14 Score=119.43 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=76.3
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeE--EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE--RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~--~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
.|+|.|++|++|+.. +.+||||+++++++. .||++++++.||+|||+|+|.+..+ ..+.|.|+|||++. +
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~----~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL----L 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC----C
Confidence 478999999999863 579999999998875 4788899999999999999998764 45689999999976 6
Q ss_pred CCCccceEEEEEcccccc
Q 009797 494 HPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~ 511 (525)
+.|++||++.+++++..+
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 789999999999998654
No 166
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.53 E-value=8.6e-14 Score=121.27 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=77.9
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC--------CCCeEEEEEEEcc
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP--------TNDRLHVEVCSVS 487 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------~~~~l~i~V~d~~ 487 (525)
.|+|+|++|++|+.. +.+||||++++++++++|+++++|.||+|||.|.|.+.... ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 589999999999863 57999999999999999999999999999999999754321 1247999999997
Q ss_pred cCccCCCCCccceEEEEEc-cccccchhhhcccCCCC
Q 009797 488 SRIGLLHPKVLFQFYFIFY-LVHRFKQECCRMKNDPF 523 (525)
Q Consensus 488 ~~~~~~~~d~~lG~v~I~l-~~~~~~~~~~~~~~~~~ 523 (525)
. .++|++||++.+.. ..+ ...........||
T Consensus 82 ~----~~~d~~iG~~~i~~~~~~-~~~~~~~~~~~W~ 113 (135)
T cd04017 82 S----VGKDEFLGRSVAKPLVKL-DLEEDFPPKLQWF 113 (135)
T ss_pred C----CCCCccceEEEeeeeeec-ccCCCCCCCceEE
Confidence 6 67899999999743 222 2222344555665
No 167
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.52 E-value=9.8e-14 Score=119.39 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=76.4
Q ss_pred cceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 417 GGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
.++++|+|++|++|... +.+||||++.++++..+|++++++.||+|||.|.|.+.+. ...|.|+|||++. +
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~----~ 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL----L 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC----C
Confidence 46899999999999863 5799999999999999999999999999999999988764 5689999999864 3
Q ss_pred CCCccceEEEEEcccc
Q 009797 494 HPKVLFQFYFIFYLVH 509 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~ 509 (525)
.|++||++.+++++.
T Consensus 76 -~d~~lG~~~~~l~~~ 90 (126)
T cd04046 76 -CDEFLGQATLSADPN 90 (126)
T ss_pred -CCCceEEEEEecccC
Confidence 489999999999875
No 168
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.52 E-value=7.5e-14 Score=119.59 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=74.4
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEEC-CeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 420 LVVIVHEAQDVEGK---HHTNPYARILFR-GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 420 L~V~v~~a~~L~~~---~~~dPyv~v~l~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
|+|+|++|++|+.. +.+||||+++++ .+.++|++++++.||+|||.|+|.+.. .+.|.|+|||++. ++.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~----~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK----FKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC----CCC
Confidence 78999999999864 578999999997 456799999999999999999999965 4699999999975 443
Q ss_pred --CccceEEEEEccccccc
Q 009797 496 --KVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 496 --d~~lG~v~I~l~~~~~~ 512 (525)
|++||++.+++.++...
T Consensus 75 ~~d~~lG~~~i~l~~l~~~ 93 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPL 93 (123)
T ss_pred CCCceEeEEEEEHHHcccc
Confidence 68999999999998543
No 169
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.52 E-value=1.5e-14 Score=140.71 Aligned_cols=105 Identities=23% Similarity=0.348 Sum_probs=90.4
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEECC-----e
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----E 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~-----~ 447 (525)
...+|+|.+.+.. ....|.|+|.+|+||.+ +|.+||||++.+-. .
T Consensus 165 tE~RGrl~l~~~~---------------------------~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~s 217 (683)
T KOG0696|consen 165 TERRGRLYLEAHI---------------------------KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNES 217 (683)
T ss_pred hhhcceEEEEEEe---------------------------cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchh
Confidence 4678999998865 24579999999999976 47899999999843 2
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
++||++++.++||+|||+|+|.+...+.+..|.|+|||+|+ .++++++|+.+.++.++..
T Consensus 218 KqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr----TsRNDFMGslSFgisEl~K 277 (683)
T KOG0696|consen 218 KQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR----TSRNDFMGSLSFGISELQK 277 (683)
T ss_pred hhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc----cccccccceecccHHHHhh
Confidence 45999999999999999999999877666799999999987 6899999999999999843
No 170
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=9.6e-14 Score=119.24 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=78.7
Q ss_pred ceEEEEEEeeecCCCC----CCCCcEEEEEECC--eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009797 418 GLLVVIVHEAQDVEGK----HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 491 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 491 (525)
|.|.|+|++|+||+.. +.+||||++.+++ ..++|++++++.||.|||.|.|.+.. ..+.|.|+|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~--- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND--- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---
Confidence 7899999999999852 3589999999988 67899999999999999999999883 45799999999976
Q ss_pred CCCCCccceEEEEEccccccc
Q 009797 492 LLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 492 ~~~~d~~lG~v~I~l~~~~~~ 512 (525)
.++|++||++.+++.++..+
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~ 96 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQN 96 (124)
T ss_pred -CCCCceeEEEEEEHHHhccC
Confidence 67899999999999998644
No 171
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.51 E-value=1.2e-13 Score=118.63 Aligned_cols=90 Identities=26% Similarity=0.406 Sum_probs=78.7
Q ss_pred ceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCC--CCCeEEEEEEEcccCcc
Q 009797 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIG 491 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~~~~~ 491 (525)
|.|.|+|++|++|+.. +.+||||+++++++.++|++.++ +.||.|||.|.|.+..+. ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~--- 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN--- 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---
Confidence 6799999999999863 47999999999998889999874 899999999999998752 24589999999975
Q ss_pred CCCCCccceEEEEEcccccc
Q 009797 492 LLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 492 ~~~~d~~lG~v~I~l~~~~~ 511 (525)
++.+++||++.+++.++..
T Consensus 78 -~~~d~~iG~~~i~l~~l~~ 96 (124)
T cd04049 78 -FSDDDFIGEATIHLKGLFE 96 (124)
T ss_pred -CCCCCeEEEEEEEhHHhhh
Confidence 6789999999999999854
No 172
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.51 E-value=1.1e-13 Score=114.99 Aligned_cols=85 Identities=24% Similarity=0.302 Sum_probs=69.3
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc---c
Q 009797 420 LVVIVHEAQDVEGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI---G 491 (525)
Q Consensus 420 L~V~v~~a~~L~~~~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~---~ 491 (525)
|.|+|++|+||++ .+||||++++.+ ...||+++++|.||+|||+|+|.+.. ...|.+.|||++... +
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence 5799999999975 599999999864 24699999999999999999999964 369999999984110 1
Q ss_pred CCCCCccceEEEEEcccc
Q 009797 492 LLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 492 ~~~~d~~lG~v~I~l~~~ 509 (525)
..+.|+.+|+..|.|+--
T Consensus 76 ~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred ccCcccEEEEEEEEECHH
Confidence 157899999988888653
No 173
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.50 E-value=8.2e-14 Score=110.76 Aligned_cols=85 Identities=35% Similarity=0.630 Sum_probs=76.6
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|+|+|++|+||+..+..+.+||||++++.+......+|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998755445799999999999999999999877777789999999999988999
Q ss_pred cEEEE
Q 009797 342 MGMNV 346 (525)
Q Consensus 342 lG~~~ 346 (525)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 174
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.50 E-value=2e-13 Score=116.58 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=74.9
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 420 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 420 L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
|.|+|++|++|+.. +.+||||++.++++. .||++++++.||+|||.|.|.+... .+.|.|+|||++. +++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~----~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDT----LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCC----CCC
Confidence 78999999999863 578999999998865 5999999999999999999998753 3689999999986 678
Q ss_pred CccceEEEEEccccc
Q 009797 496 KVLFQFYFIFYLVHR 510 (525)
Q Consensus 496 d~~lG~v~I~l~~~~ 510 (525)
|++||++.++++.+.
T Consensus 76 d~~iG~~~~~~~~~~ 90 (121)
T cd04054 76 DDVIGKVSLTREVIS 90 (121)
T ss_pred CCEEEEEEEcHHHhc
Confidence 999999999998874
No 175
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.49 E-value=1e-13 Score=161.04 Aligned_cols=123 Identities=21% Similarity=0.411 Sum_probs=103.2
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEec
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDW 333 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~ 333 (525)
+....|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||+|+|.+.++. .+.|+++|||+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 3456899999999999998 3468999999999996543 58999999999999999999998765 46799999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeE---EEEEEEEEe
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQ---LVVEFIYKP 390 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---l~l~l~~~p 390 (525)
|.+++| .||.+++++.++..+.....++++.+ +++..|+ |++++.|.+
T Consensus 2051 d~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCCC-CCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 998555 99999999999998877777887742 2355677 999988864
No 176
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.48 E-value=2.1e-13 Score=117.51 Aligned_cols=88 Identities=19% Similarity=0.301 Sum_probs=75.7
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCe---EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
.+.|+|.+|++|+.. +.+||||++++++. ..||++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC----
Confidence 689999999999863 57899999998653 46999999999999999999999874 44689999999975
Q ss_pred CCCCccceEEEEEcccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~ 511 (525)
.+.+++||++.++|.++..
T Consensus 77 ~~~~~~iG~~~i~l~~~~~ 95 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRF 95 (126)
T ss_pred CCCCceEEEEEEecCHHHc
Confidence 5689999999999987543
No 177
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.48 E-value=2.6e-13 Score=116.92 Aligned_cols=90 Identities=22% Similarity=0.366 Sum_probs=75.9
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc----
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG---- 491 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~---- 491 (525)
.|.|+|++|++|+.. +.+||||+++++++.++|++++++.||.|||.|.|.+..+ .+.|.|+|||++....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence 689999999999864 4789999999998888999999999999999999998653 4689999999974200
Q ss_pred --C-CCCCccceEEEEEccccc
Q 009797 492 --L-LHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 492 --~-~~~d~~lG~v~I~l~~~~ 510 (525)
+ .+.+++||++.+++.++.
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred eeccccCCCcceEEEEEhHHcc
Confidence 0 146999999999999874
No 178
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.48 E-value=2.4e-13 Score=117.19 Aligned_cols=85 Identities=21% Similarity=0.368 Sum_probs=74.8
Q ss_pred EEeeecCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCccceE
Q 009797 424 VHEAQDVEG-KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKVLFQF 501 (525)
Q Consensus 424 v~~a~~L~~-~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~i~V~d~~~~~~~~~~d~~lG~ 501 (525)
|++|+||+. .+.+||||++++++.+++|++++++.||+|||.|.|.+..+. ..+.|.|+|||++. .++|++||+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~----~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK----VGRNRLIGS 77 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC----CCCCceEEE
Confidence 688999987 467999999999999999999999999999999999997642 34699999999975 678999999
Q ss_pred EEEEccccccc
Q 009797 502 YFIFYLVHRFK 512 (525)
Q Consensus 502 v~I~l~~~~~~ 512 (525)
+.+++.++..+
T Consensus 78 ~~~~l~~l~~~ 88 (127)
T cd08373 78 ATVSLQDLVSE 88 (127)
T ss_pred EEEEhhHcccC
Confidence 99999988643
No 179
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.48 E-value=2.4e-13 Score=121.35 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=74.5
Q ss_pred cceEEEEEEeeecCCCC---------------------------------CCCCcEEEEEECCeE-EEeeeecCCCCCcc
Q 009797 417 GGLLVVIVHEAQDVEGK---------------------------------HHTNPYARILFRGEE-RKTKHVKKNRDPRW 462 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~---------------------------------~~~dPyv~v~l~~~~-~kT~v~~~t~nP~w 462 (525)
-|.|.|+|++|++|+.+ +.+||||++.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 47788888888888642 347999999999866 49999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 463 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 463 ne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
||.|+|.+... .+.|.|+|+|++. + .+++||.+.++++++..+
T Consensus 86 nE~F~~~~~~~--~~~l~~~V~d~d~----~-~~~~IG~~~i~l~~l~~g 128 (158)
T cd04015 86 NESFHIYCAHY--ASHVEFTVKDNDV----V-GAQLIGRAYIPVEDLLSG 128 (158)
T ss_pred ceEEEEEccCC--CCEEEEEEEeCCC----c-CCcEEEEEEEEhHHccCC
Confidence 99999998754 3689999999974 4 368999999999998643
No 180
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.47 E-value=2e-13 Score=118.98 Aligned_cols=87 Identities=28% Similarity=0.342 Sum_probs=75.8
Q ss_pred EEEEEEeeecCCCC--CCCCcEEEEEEC----CeEEEeeeecCCCCCcccceEEEEecCCC--------------CCCeE
Q 009797 420 LVVIVHEAQDVEGK--HHTNPYARILFR----GEERKTKHVKKNRDPRWEEEFQFMLEEPP--------------TNDRL 479 (525)
Q Consensus 420 L~V~v~~a~~L~~~--~~~dPyv~v~l~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------------~~~~l 479 (525)
|.|.|++|+||+.. +.+||||+++++ +..++|++++++.||.|||.|.|.+.... ....|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 57899999999854 679999999998 66789999999999999999999987641 23489
Q ss_pred EEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 480 HVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 480 ~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
.|+|||++. ++++++||++.+++.++.
T Consensus 81 ~i~V~d~~~----~~~~~~IG~~~i~l~~l~ 107 (137)
T cd08675 81 RVELWHASM----VSGDDFLGEVRIPLQGLQ 107 (137)
T ss_pred EEEEEcCCc----CcCCcEEEEEEEehhhcc
Confidence 999999985 678999999999999975
No 181
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.46 E-value=3.9e-13 Score=118.47 Aligned_cols=96 Identities=21% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCcceEEEEEEeeecCCC---CCCCCcEEEEEECCe-----------------------------EEEeeeecCCCCCcc
Q 009797 415 AGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE-----------------------------ERKTKHVKKNRDPRW 462 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~~-----------------------------~~kT~v~~~t~nP~w 462 (525)
...+.|.|+|++|+||.. .+.+||||++.+.+. .++|+++++|.||+|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 468999999999999976 357999999998632 258999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 463 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 463 ne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
||.|.|.+... ....|.|+|||++ +++||++.+++.++. + .....||.
T Consensus 105 nE~F~f~v~~~-~~~~L~i~V~D~d--------d~~IG~v~i~l~~l~-~----~~~d~W~~ 152 (153)
T cd08676 105 NETFRFEVEDV-SNDQLHLDIWDHD--------DDFLGCVNIPLKDLP-S----CGLDSWFK 152 (153)
T ss_pred ccEEEEEeccC-CCCEEEEEEEecC--------CCeEEEEEEEHHHhC-C----CCCCCeEe
Confidence 99999999764 3568999999994 789999999999986 2 13588874
No 182
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.44 E-value=4.3e-13 Score=115.35 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=78.1
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECC-eEEEeeeec-CCCCCcccceEEEEecCCC---CCCeEEEEEEEcccCc
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVK-KNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRI 490 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-~~~kT~v~~-~t~nP~wne~f~f~v~~~~---~~~~l~i~V~d~~~~~ 490 (525)
.|.|+|++|++|+.. +.+||||++++++ ++++|++.+ ++.||.|||.|.|.+.... ....|.|+|+|++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-- 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-- 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC--
Confidence 378999999999863 5799999999988 778999975 5899999999999998752 15689999999975
Q ss_pred cCCCCCccceEEEEEccccccch
Q 009797 491 GLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
++.|++||++.+++.++..+.
T Consensus 79 --~~~~~~lG~~~i~l~~l~~~~ 99 (125)
T cd04051 79 --SLGDKLIGEVRVPLKDLLDGA 99 (125)
T ss_pred --CCCCCcEEEEEEEHHHhhccc
Confidence 567999999999999986654
No 183
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.42 E-value=1.5e-12 Score=111.69 Aligned_cols=87 Identities=23% Similarity=0.355 Sum_probs=74.8
Q ss_pred eEEEEEEeeecCCC--CCCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 419 LLVVIVHEAQDVEG--KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 419 ~L~V~v~~a~~L~~--~~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
.|.|+|.+|+.+.. .+.+||||+++++++ .++|++++++.||+|||.|.|.+.. .+.|.|+|||++. .+.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~----~~~ 75 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT----LKA 75 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC----CCC
Confidence 58999999984443 246999999999988 7899999999999999999999864 3689999999986 678
Q ss_pred CccceEEEEEccccccc
Q 009797 496 KVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~ 512 (525)
+++||++.++|.++...
T Consensus 76 ~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 76 DVLLGEASLDLSDILKN 92 (125)
T ss_pred CcEEEEEEEEHHHhHhh
Confidence 99999999999997543
No 184
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.41 E-value=1.5e-12 Score=110.24 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=76.0
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 420 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 420 L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
|+|+|++|++|+.. +.+||||+++++++. ++|+++.++.||.|||.|.|.+... ..+.+.|+|||++. .++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~----~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR----GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC----CCC
Confidence 57899999999863 468999999997744 6999999999999999999999864 45689999999975 678
Q ss_pred CccceEEEEEccccccc
Q 009797 496 KVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~ 512 (525)
+++||++.+++.++..+
T Consensus 76 ~~~iG~~~~~l~~l~~~ 92 (115)
T cd04040 76 DDLLGSAYIDLSDLEPE 92 (115)
T ss_pred CCceEEEEEEHHHcCCC
Confidence 99999999999997543
No 185
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.40 E-value=2.2e-12 Score=111.82 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=72.5
Q ss_pred EEEEEEeeecCCCC--CCCCcEEEEEECC-------------eEEEeeeecCCCCCcc-cceEEEEecCCCCCCeEEEEE
Q 009797 420 LVVIVHEAQDVEGK--HHTNPYARILFRG-------------EERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHVEV 483 (525)
Q Consensus 420 L~V~v~~a~~L~~~--~~~dPyv~v~l~~-------------~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~i~V 483 (525)
..|++++|+||+.. +.+||||++++.+ +.++|++++++.||+| ||.|.|.+.. ++.|.++|
T Consensus 3 ~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~V 79 (137)
T cd08691 3 FSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIEV 79 (137)
T ss_pred EEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEEE
Confidence 57889999999842 6899999999953 3579999999999999 9999999863 36899999
Q ss_pred EEcccCccCCCCCccceEEEEEccccccc
Q 009797 484 CSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 484 ~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
||++.. +....+++||++.|++.++..+
T Consensus 80 ~D~~~~-~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 80 KDKFAK-SRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred EecCCC-CCccCCceEEEEEEEHHHhccc
Confidence 998642 1011379999999999998544
No 186
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.39 E-value=2.4e-12 Score=113.32 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=69.9
Q ss_pred EEEEEEeeec--CCC---CCCCCcEEEEEE--C---CeEEEeeeecCCCCCcccceEEEEecCCC-------CCCeEEEE
Q 009797 420 LVVIVHEAQD--VEG---KHHTNPYARILF--R---GEERKTKHVKKNRDPRWEEEFQFMLEEPP-------TNDRLHVE 482 (525)
Q Consensus 420 L~V~v~~a~~--L~~---~~~~dPyv~v~l--~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~-------~~~~l~i~ 482 (525)
..++|..|++ |++ .+.+||||++++ . .++.||+++++|.||+|||+|.|.+.... ....|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3456666666 555 247999999997 2 24679999999999999999999996531 13479999
Q ss_pred EEEcccCccCCCCCccceEEEEEccccccc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
|||++. ++++|++||++.++|..+..+
T Consensus 84 V~d~~~---f~~~D~~iG~~~i~L~~l~~~ 110 (155)
T cd08690 84 VYHKGG---FLRSDKLLGTAQVKLEPLETK 110 (155)
T ss_pred EEeCCC---cccCCCeeEEEEEEccccccc
Confidence 999974 135799999999999997433
No 187
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.38 E-value=2.6e-12 Score=109.11 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=70.2
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCc
Q 009797 420 LVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKV 497 (525)
Q Consensus 420 L~V~v~~a~~L~~~~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~ 497 (525)
|.|+|++|+||+..+.+||||++++++++ ++|+++++ .||.|||+|.|.+...... ..|.+.++|++. .+.+.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~----~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS----KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc----CCCee
Confidence 78999999999988889999999999864 69999999 9999999999999864322 367888888864 45678
Q ss_pred cceEEEEEcccc
Q 009797 498 LFQFYFIFYLVH 509 (525)
Q Consensus 498 ~lG~v~I~l~~~ 509 (525)
.+|.+.|+....
T Consensus 77 ~~g~v~l~~~~~ 88 (117)
T cd08383 77 VIGKVALSKLDL 88 (117)
T ss_pred EEEEEEecCcCC
Confidence 888888776654
No 188
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.37 E-value=3.4e-12 Score=111.15 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=79.3
Q ss_pred cceEEEEEEeeecCCCCCCCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
...|.|.|.+|++|+.+ .+|||.+.+++... ||+++.++.||.|+|.|.|.+..+ ...+.|.|+..+...+-..+
T Consensus 10 ~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccC
Confidence 34689999999999986 48999999999886 999999999999999999986653 35799999866532211236
Q ss_pred CccceEEEEEccccccchhhhcccCCCC
Q 009797 496 KVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
+.+||.+.|++.++.. ......||
T Consensus 86 ~~~IG~V~Ip~~~l~~----~~~ve~Wf 109 (146)
T cd04013 86 SQLIGTVNIPVTDVSS----RQFVEKWY 109 (146)
T ss_pred CcEEEEEEEEHHHhcC----CCcccEEE
Confidence 8999999999999863 45566666
No 189
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.37 E-value=2.3e-12 Score=109.95 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=71.7
Q ss_pred EEEeeecCCCC---CCCCcEEEEEECCeE-------EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 423 IVHEAQDVEGK---HHTNPYARILFRGEE-------RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 423 ~v~~a~~L~~~---~~~dPyv~v~l~~~~-------~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
..++|++|+.. +.+||||++++.+.. ++|++++++.||+|||+|.|.+... ..+.|.|+|||++...+.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCC
Confidence 34889999863 578999999997753 6999999999999999999987643 346899999999751001
Q ss_pred CCCCccceEEEEEccccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~ 512 (525)
++++++||++.+++.++..+
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~ 103 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSS 103 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 46899999999999998533
No 190
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.3e-12 Score=132.32 Aligned_cols=124 Identities=25% Similarity=0.451 Sum_probs=101.7
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecC
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 334 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~ 334 (525)
..++...++++|++|.+|..+|..|++||||.+.++..+ ++|+++...+||+|||.|+|..++. ++.++++|||.|
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded 365 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDED 365 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCc
Confidence 446788999999999999999999999999999998765 5899999999999999999999874 788999999987
Q ss_pred CC-----------CCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 335 QV-----------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 335 ~~-----------~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
.. ..|||+|+..|.++.+..+...|+.++ +.. .++..+|.|++.+...
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsgemdvwynle--krt-----dksavsgairlhisve 424 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLE--KRT-----DKSAVSGAIRLHISVE 424 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccchhhhcchh--hcc-----chhhccceEEEEEEEE
Confidence 42 468999999999999987765555543 222 2356788776665543
No 191
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.5e-12 Score=130.26 Aligned_cols=108 Identities=22% Similarity=0.298 Sum_probs=93.0
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCe---EE
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE---ER 449 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~---~~ 449 (525)
....|+|.+++.|.. ....|.|+|.+|+||+.. +.+||||++++... +.
T Consensus 150 ~~~~G~l~fsl~Yd~-------------------------~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~ 204 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDF-------------------------ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKF 204 (421)
T ss_pred ceeeeeEEEEEEecc-------------------------cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcc
Confidence 567899999999975 577899999999999974 46899999999764 35
Q ss_pred EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+|++.++|+||+|||+|.|.|..... ...|.+.|||.|. |+++++||.+.++|......
T Consensus 205 kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr----fsr~~~iGev~~~l~~~~~~ 264 (421)
T KOG1028|consen 205 KTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR----FSRHDFIGEVILPLGEVDLL 264 (421)
T ss_pred eeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC----cccccEEEEEEecCcccccc
Confidence 99999999999999999999775433 3599999999987 99999999999998876444
No 192
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.35 E-value=3.4e-12 Score=101.33 Aligned_cols=79 Identities=33% Similarity=0.550 Sum_probs=69.3
Q ss_pred EEEEEEeeecCCC---CCCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 420 LVVIVHEAQDVEG---KHHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 420 L~V~v~~a~~L~~---~~~~dPyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
|.|+|++|+||+. .+.+||||++++++ ..++|++++++.+|.|||.|.|.+..+. .+.|.|+|||.+. .
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~~~V~~~~~----~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD-LDSLSFEVWDKDS----F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC-GTEEEEEEEEETS----S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc-ccceEEEEEECCC----C
Confidence 6899999999997 35789999999988 6789999999999999999999987753 3569999999986 6
Q ss_pred CCCccceEEE
Q 009797 494 HPKVLFQFYF 503 (525)
Q Consensus 494 ~~d~~lG~v~ 503 (525)
+.|++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 6799999873
No 193
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.35 E-value=1.6e-12 Score=151.35 Aligned_cols=91 Identities=22% Similarity=0.394 Sum_probs=82.0
Q ss_pred CcceEEEEEEeeecCCCC-CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 416 GGGLLVVIVHEAQDVEGK-HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~-~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
-.|.|.|+|++|+||..+ +.+||||++.++++ ++||++++++.||+|||.|+|.+.+++.++.|+|+|||+|. +
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~----f 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----F 2053 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc----c
Confidence 568999999999999975 78999999999965 78999999999999999999999998777899999999985 6
Q ss_pred CCCccceEEEEEcccccc
Q 009797 494 HPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~ 511 (525)
.++.||++.|++.+...
T Consensus 2054 -~kd~~G~~~i~l~~vv~ 2070 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVM 2070 (2102)
T ss_pred -CCCCCceEEEEHHHHhc
Confidence 45699999999999753
No 194
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.34 E-value=7.4e-12 Score=108.08 Aligned_cols=92 Identities=22% Similarity=0.250 Sum_probs=76.5
Q ss_pred eEEEEEEeeecCCC-----CCCCCcEEEEEEC------CeEEEeeeecCCC-CCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 419 LLVVIVHEAQDVEG-----KHHTNPYARILFR------GEERKTKHVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 419 ~L~V~v~~a~~L~~-----~~~~dPyv~v~l~------~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
.|+|+|++|+||+. .+.+||||++++. ..+.+|++++++. ||.|||+|.|.+..+ ....|.++|+|.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 58999999999975 3468999999994 3457999988776 999999999999865 335799999999
Q ss_pred ccCccCCCCCccceEEEEEccccccchhhh
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
+. . ++++||++.+++.++..+.+..
T Consensus 82 ~~----~-~~~~iG~~~~~l~~l~~g~~~~ 106 (128)
T cd00275 82 DS----G-DDDFLGQACLPLDSLRQGYRHV 106 (128)
T ss_pred CC----C-CCcEeEEEEEEhHHhcCceEEE
Confidence 75 4 7999999999999987665443
No 195
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.34 E-value=4.9e-12 Score=106.14 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=69.1
Q ss_pred EEEEeeecCCCC---CCCCcEEEEEECCe------EEEeeeecCCCCCcccceEEEEecCC---CCCCeEEEEEEEcccC
Q 009797 422 VIVHEAQDVEGK---HHTNPYARILFRGE------ERKTKHVKKNRDPRWEEEFQFMLEEP---PTNDRLHVEVCSVSSR 489 (525)
Q Consensus 422 V~v~~a~~L~~~---~~~dPyv~v~l~~~------~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~~l~i~V~d~~~~ 489 (525)
+..++|++|+.. +.+||||++++.++ .++|++++++.||+|| .|.|.+... .....|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 345799999864 57999999998654 3699999999999999 688876432 124689999999986
Q ss_pred ccCCCCCccceEEEEEccccc
Q 009797 490 IGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 490 ~~~~~~d~~lG~v~I~l~~~~ 510 (525)
+++|++||++.+++.++.
T Consensus 82 ---~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 ---SGKHDLIGEFETTLDELL 99 (110)
T ss_pred ---CCCCcEEEEEEEEHHHHh
Confidence 778999999999999986
No 196
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.33 E-value=1.3e-11 Score=105.46 Aligned_cols=95 Identities=24% Similarity=0.282 Sum_probs=80.3
Q ss_pred EEEEEEeccCCcccC--cCC--CCCcEEEEEEcCCcCCceeeeecCCCCC--CeEeeEEEEEeeCC--------------
Q 009797 262 LHVKVVKAMNLKKKD--LLG--ASDPYVKLKITEDKLPSKKTTVKHKNLN--PEWNEEYNFTVRDP-------------- 321 (525)
Q Consensus 262 L~V~v~~A~~L~~~d--~~g--~~dpyv~v~~~~~~~~~~kT~v~~~t~n--P~w~e~f~f~v~~~-------------- 321 (525)
|+|.|.+|++++..+ ..| .+||||++.+.+....+++|.+..+++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966543 356 4999999999886555679999999999 99999999887641
Q ss_pred ---------CCCeEEEEEEecCCCCCCCccEEEEEECcccCCCC
Q 009797 322 ---------ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 322 ---------~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
....|.++|||+|.+++|++||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24679999999999999999999999999887653
No 197
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.33 E-value=4.4e-12 Score=106.50 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=63.5
Q ss_pred CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 434 HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 434 ~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
|.+||||+++++++ .++|++++++.||+|||.|+|.+.+. ..+.|.|+|+|++. + +|++||++.++|.++..
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~-~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD----R-HDPVLGSVSISLNDLID 83 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC----C-CCCeEEEEEecHHHHHh
Confidence 57899999999886 46999999999999999999999875 45689999999975 6 79999999999998743
No 198
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.29 E-value=2.2e-11 Score=99.58 Aligned_cols=96 Identities=43% Similarity=0.697 Sum_probs=82.4
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|.|+|++|++|......+..+|||++++.+......+|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36899999999998776568899999999865222368999999999999999999998765789999999999877899
Q ss_pred ccEEEEEECcccCCCC
Q 009797 341 KMGMNVVPLKELTPEE 356 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~ 356 (525)
++|.+.+++.++..+.
T Consensus 81 ~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 81 FIGQVTIPLSDLLLGG 96 (101)
T ss_pred eeEEEEEEHHHcccCc
Confidence 9999999999987664
No 199
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.26 E-value=3.1e-11 Score=103.14 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=76.1
Q ss_pred EEEEEEeeecCCC-----CC--CCCcEEEEEECC---eEEEeeeecCCCC--CcccceEEEEecCCCC------------
Q 009797 420 LVVIVHEAQDVEG-----KH--HTNPYARILFRG---EERKTKHVKKNRD--PRWEEEFQFMLEEPPT------------ 475 (525)
Q Consensus 420 L~V~v~~a~~L~~-----~~--~~dPyv~v~l~~---~~~kT~v~~~t~n--P~wne~f~f~v~~~~~------------ 475 (525)
|+|.|.+|+|++. .+ .+||||++.+.+ ++++|.+.+++.| |+||++|.|.+..++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999653 23 499999999976 3569999999999 9999999999876322
Q ss_pred ----------CCeEEEEEEEcccCccCCCCCccceEEEEEccccccch
Q 009797 476 ----------NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 476 ----------~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
...|.++|||.|. +++|++||.+.++|..++.+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~----~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK----FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc----cCCCCcceEEEEEhhhccccc
Confidence 2489999999986 889999999999999987664
No 200
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.24 E-value=6.7e-11 Score=96.42 Aligned_cols=99 Identities=41% Similarity=0.637 Sum_probs=82.8
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|.|+|++|++|......+..+|||.+.+.+. ...+|+++.++.||.|+|.|.|.+.......+.++||+.+..+.+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 4789999999988766778999999999872 23689999999999999999999976456789999999998878899
Q ss_pred cEEEEEECcccC-CCCCeeEEE
Q 009797 342 MGMNVVPLKELT-PEEPSVKTL 362 (525)
Q Consensus 342 lG~~~i~L~~l~-~~~~~~~~~ 362 (525)
+|.+.+++.++. .......|+
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~ 100 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWL 100 (102)
T ss_pred eEEEEEeHHHhhhcCCcCccee
Confidence 999999999998 443444443
No 201
>PLN03008 Phospholipase D delta
Probab=99.18 E-value=6.6e-11 Score=126.67 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=64.1
Q ss_pred CCCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 434 HHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 434 ~~~dPyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+.+||||+|.+++++. ||++++++.||+|||.|.|.|.++ ...|.|+|+|++. ++ ++.||.+.|++.++..+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~----~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV----FG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc----cC-CceeEEEEEEHHHcCCC
Confidence 5689999999988654 999999999999999999999985 3589999999875 55 68999999999998776
Q ss_pred h
Q 009797 513 Q 513 (525)
Q Consensus 513 ~ 513 (525)
+
T Consensus 148 e 148 (868)
T PLN03008 148 E 148 (868)
T ss_pred C
Confidence 4
No 202
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.17 E-value=1.7e-10 Score=92.55 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=73.3
Q ss_pred HHHHHHHhh-hHH-HHHHHHHHHHHHHHHHh-cCCceeeeeEEEeEEeCCCCCCeEeeeEEEec-CCCeEEEEeeeeEeC
Q 009797 75 NKFLELMWP-YLD-KAICKTAKNIAKPIIAE-QIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEPCLKWAA 150 (525)
Q Consensus 75 N~~l~~~W~-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~le~~~~~~~ 150 (525)
|.+++|++- +.+ +.+.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++++.+. .++++.+|+|+.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 678888655 444 68899999999999998 46998 99999999999999999999999864 455699999999999
Q ss_pred CCcEEEEEEE
Q 009797 151 NPNVTIGVKA 160 (525)
Q Consensus 151 ~~~i~l~~~~ 160 (525)
+..++++.++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9998888764
No 203
>PLN02223 phosphoinositide phospholipase C
Probab=99.14 E-value=2.4e-10 Score=117.76 Aligned_cols=98 Identities=30% Similarity=0.456 Sum_probs=82.5
Q ss_pred eeEEEEEEEeccCCccc-----CcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE
Q 009797 259 VGILHVKVVKAMNLKKK-----DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY 331 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~-----d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~ 331 (525)
...|+|+|++|.+++.. +.....||||+|.+.|-. ...++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46899999999987511 223457999999997632 23457888889999999999999999988888999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
|+|..++++++|++.+|+..+..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998888999999999999999885
No 204
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.14 E-value=1.1e-10 Score=124.44 Aligned_cols=92 Identities=25% Similarity=0.435 Sum_probs=81.9
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
-.++|.+++|-+|.+.|.+|.+|||+++.+++... ..++..+.+|+||+|.+.|++....+....+.++|||+|..+.|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 35679999999999999999999999999997653 24677889999999999999998877778899999999999999
Q ss_pred CccEEEEEECccc
Q 009797 340 DKMGMNVVPLKEL 352 (525)
Q Consensus 340 ~~lG~~~i~L~~l 352 (525)
+.+|+..++|+.-
T Consensus 692 ~~iget~iDLEnR 704 (1105)
T KOG1326|consen 692 EKIGETTIDLENR 704 (1105)
T ss_pred chhhceehhhhhc
Confidence 9999999998753
No 205
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.14 E-value=4.7e-10 Score=91.61 Aligned_cols=90 Identities=24% Similarity=0.403 Sum_probs=77.2
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCe---EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 420 LVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 420 L~V~v~~a~~L~~~---~~~dPyv~v~l~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
+.+.|++|++|... +..+|||++++.+. ..+|+++.++.||.|||.|.|.+.... ...|.|+|||++. .
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~----~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDR----F 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCC----c
Confidence 67899999999874 36899999999875 689999999999999999999998753 5799999999975 4
Q ss_pred CCCccceEEEEEccccccchh
Q 009797 494 HPKVLFQFYFIFYLVHRFKQE 514 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~ 514 (525)
+.+..+|.+.+++.++..+.+
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred cCCceeEEEEEEHHHcccCcc
Confidence 568999999999998865543
No 206
>PLN02270 phospholipase D alpha
Probab=99.12 E-value=1e-09 Score=117.66 Aligned_cols=129 Identities=18% Similarity=0.329 Sum_probs=103.5
Q ss_pred ceeEEEEEEEeccCCcccC------------------cCCCCCcEEEEEEcCCcCCceeeeecCCC-CCCeEeeEEEEEe
Q 009797 258 PVGILHVKVVKAMNLKKKD------------------LLGASDPYVKLKITEDKLPSKKTTVKHKN-LNPEWNEEYNFTV 318 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-~nP~w~e~f~f~v 318 (525)
-.|.|.|+|.+|++|++.+ ..+.+||||.|.+++.+. .||+++.+. .||.|+|+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEee
Confidence 3699999999999998631 125689999999997664 799999885 6999999999999
Q ss_pred eCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCC
Q 009797 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE 394 (525)
Q Consensus 319 ~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (525)
... ...+.|+|.|.+.++. .+||.+.+|..++..++..+.|+++...- .+..+....|++++.|.|...+
T Consensus 84 ah~-~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 84 AHM-ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred ccC-cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccC
Confidence 765 4689999999998764 59999999999999998888888875321 1112233489999999997665
No 207
>PLN02952 phosphoinositide phospholipase C
Probab=99.05 E-value=2.1e-09 Score=113.31 Aligned_cols=103 Identities=29% Similarity=0.435 Sum_probs=83.9
Q ss_pred eeEEEEEEEeccCCccc------CcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEE
Q 009797 259 VGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV 330 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 330 (525)
...|.|+|++|.+++.. +.....||||+|.+-|-. ..+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987532 111345999999986532 2346899999999999999999999988777899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||+|..+.++++|++.+|+..|..+-. +++|
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL 579 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPL 579 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeC
Confidence 999988899999999999999998853 4455
No 208
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.03 E-value=2.4e-09 Score=87.07 Aligned_cols=86 Identities=29% Similarity=0.434 Sum_probs=75.0
Q ss_pred EEEEEEeeecCCC---CCCCCcEEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 420 LVVIVHEAQDVEG---KHHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 420 L~V~v~~a~~L~~---~~~~dPyv~v~l~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
|.|.|++|++|+. .+..||||++.+.+ ...+|++..++.||.|||.|.|.+... ....+.++|++.+. ...
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~----~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR----FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC----CCC
Confidence 4689999999976 35799999999998 778999999999999999999999873 34689999999975 456
Q ss_pred CccceEEEEEccccc
Q 009797 496 KVLFQFYFIFYLVHR 510 (525)
Q Consensus 496 d~~lG~v~I~l~~~~ 510 (525)
+.++|.+.+++.++.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 899999999999975
No 209
>PLN02223 phosphoinositide phospholipase C
Probab=98.97 E-value=2.9e-09 Score=109.87 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=80.9
Q ss_pred CcceEEEEEEeeecCCC--------CCCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009797 416 GGGLLVVIVHEAQDVEG--------KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~--------~~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~ 482 (525)
....|.|+|+.|++++. ...+||||+|.+.|- .++|++..++.||+|||+|+|.+..+++ ..|.|+
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL-AlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL-ALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc-eEEEEE
Confidence 35679999999998741 125799999999763 4578777788999999999999988743 689999
Q ss_pred EEEcccCccCCCCCccceEEEEEccccccchhhhcc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRM 518 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~ 518 (525)
|+|+|. .+.|+++|+..+++.+++.|.++..-
T Consensus 486 V~D~D~----~~~ddfiGQ~~LPv~~Lr~GyR~VpL 517 (537)
T PLN02223 486 VYDYEV----STADAFCGQTCLPVSELIEGIRAVPL 517 (537)
T ss_pred EEecCC----CCCCcEEEEEecchHHhcCCceeEec
Confidence 999985 56799999999999999999877653
No 210
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.96 E-value=2.8e-10 Score=117.22 Aligned_cols=133 Identities=26% Similarity=0.501 Sum_probs=104.2
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC-------------------------cC---CceeeeecCCC
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED-------------------------KL---PSKKTTVKHKN 305 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-------------------------~~---~~~kT~v~~~t 305 (525)
..+.|.-.+.|.+.+|+||.++|.+|.+|||+...+... .. -.+-|++++.|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 445566778888999999999999999999999887210 00 02468899999
Q ss_pred CCCeEeeEEEEEeeCCCCCeEEEEEEecCCC---------------------------------C---CCCccEEEEEEC
Q 009797 306 LNPEWNEEYNFTVRDPESQAVELAVYDWEQV---------------------------------G---KHDKMGMNVVPL 349 (525)
Q Consensus 306 ~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~---------------------------------~---~d~~lG~~~i~L 349 (525)
+||.|+|.|.|.+.+..++.+.+.+||+|+- + .|||+|.+.+||
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 9999999999999999899999999998742 2 288999999999
Q ss_pred cccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecC
Q 009797 350 KELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 392 (525)
Q Consensus 350 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (525)
.++... +.+.|+.|.+.. ..++..|++++.+......
T Consensus 268 ~EiP~~-Gld~WFkLepRS-----~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 268 AEIPPD-GLDQWFKLEPRS-----DKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred hcCCcc-hHHHHhccCccc-----ccccccceEEEEEEEeeec
Confidence 999876 344555553322 2468899999999776543
No 211
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.95 E-value=3e-09 Score=111.93 Aligned_cols=99 Identities=23% Similarity=0.321 Sum_probs=82.4
Q ss_pred eeEEEEEEEeccCCccc------CcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEE
Q 009797 259 VGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV 330 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 330 (525)
...|.|+|+.+.+++.. +.....||||+|.+-|-. ...++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 112356999999996532 2346889999999999999999999988888999999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCC
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEP 357 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~ 357 (525)
+|+|...+|+++|+..+|+..|..+-.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999988899999999999999998843
No 212
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.93 E-value=5.9e-09 Score=109.63 Aligned_cols=98 Identities=29% Similarity=0.469 Sum_probs=82.3
Q ss_pred EEEEEEEeccCCcccCc----CCCCCcEEEEEEcCCc--CCceeee-ecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 261 ILHVKVVKAMNLKKKDL----LGASDPYVKLKITEDK--LPSKKTT-VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~----~g~~dpyv~v~~~~~~--~~~~kT~-v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
+|.|+|+++.+++.... ...+||||.|.+-|-+ ....+|+ +..++-||.|+|+|+|.+..|+-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997664422 2457999999986533 2345788 667889999999999999999888999999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCe
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPS 358 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~ 358 (525)
|..++|||+|+..+|+..|..+-.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999988543
No 213
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.9e-09 Score=109.81 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=83.4
Q ss_pred CCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 410 PENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 410 ~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
.++.+.-+..+.++|.+|++|..+ |.+||||.+.++..+++|+++-..+||+|||.|.|.+++. .+.|.+.|||.
T Consensus 287 legsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwde 364 (1283)
T KOG1011|consen 287 LEGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDE 364 (1283)
T ss_pred hccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecC
Confidence 455556788999999999999864 6899999999999999999999999999999999999984 57899999999
Q ss_pred ccCcc------C-CCCCccceEEEEEccccc
Q 009797 487 SSRIG------L-LHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 487 ~~~~~------~-~~~d~~lG~v~I~l~~~~ 510 (525)
|...- + ..+|++||+..|.+..+.
T Consensus 365 d~dlksklrqkl~resddflgqtvievrtls 395 (1283)
T KOG1011|consen 365 DNDLKSKLRQKLTRESDDFLGQTVIEVRTLS 395 (1283)
T ss_pred cccHHHHHHHHhhhcccccccceeEEEEecc
Confidence 75210 0 247999999999887764
No 214
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.88 E-value=9e-09 Score=108.19 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=81.0
Q ss_pred eeEEEEEEEeccCCc--cc--C--cCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEE
Q 009797 259 VGILHVKVVKAMNLK--KK--D--LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV 330 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~--~~--d--~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 330 (525)
...|.|+|+.+.+++ .. . .....||||+|.+.|-. ..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 11 1 12357999999996532 2346899999999999999999999888878999999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCC
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
+|+|..+.++++|++.+|+..|..+-
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy 556 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI 556 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc
Confidence 99998888999999999999999884
No 215
>PLN02228 Phosphoinositide phospholipase C
Probab=98.87 E-value=2.5e-08 Score=104.60 Aligned_cols=125 Identities=25% Similarity=0.354 Sum_probs=93.1
Q ss_pred eeEEEEEEEeccCCcc---cC---cCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeE-eeEEEEEeeCCCCCeEEEE
Q 009797 259 VGILHVKVVKAMNLKK---KD---LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEW-NEEYNFTVRDPESQAVELA 329 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~---~d---~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~ 329 (525)
...|+|+|++|.+|+. .+ .....||||+|.+.+-. ....+|++++++.||.| ||+|.|.+..++-..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999998731 11 12347999999986532 23468999988899999 9999999998887899999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
|+|+|..+.++++|++.+|+..|..+-.+ ++|... . . ..-...+|.+.+.+.+.
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~---VpL~~~---~-G-~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVRA---VRLHDR---A-G-KAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCeeE---EEccCC---C-C-CCCCCeEEEEEEEEcCc
Confidence 99999888999999999999999887432 233211 1 0 11234578888877653
No 216
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.86 E-value=6.4e-09 Score=83.39 Aligned_cols=86 Identities=21% Similarity=0.416 Sum_probs=71.1
Q ss_pred EEEEEEeccCCcccC---cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 262 LHVKVVKAMNLKKKD---LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 262 L~V~v~~A~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
|.|+|.+|+|+.-.+ ..+.+||||.+.+++.. +.||++ +.||.|||+|.|.+. ....+.+.|||.. ...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~-~~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKG-GDQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCC-CCe
Confidence 679999999998777 56789999999999764 257765 489999999999994 3678999999985 345
Q ss_pred CCccEEEEEECcccCCC
Q 009797 339 HDKMGMNVVPLKELTPE 355 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~ 355 (525)
.-.+|..-+.++++.++
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 66899999999988754
No 217
>PLN02952 phosphoinositide phospholipase C
Probab=98.81 E-value=2.3e-08 Score=105.56 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=80.5
Q ss_pred cceEEEEEEeeecCCC--C-------CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009797 417 GGLLVVIVHEAQDVEG--K-------HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~--~-------~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~ 482 (525)
...|.|+|+.|++++. . ...||||+|.+-| .+++|+++.++.||+|||+|+|.+..++. ..+.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL-Allrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL-ALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc-cEEEEE
Confidence 4679999999988742 1 1359999999976 35699999999999999999999987633 589999
Q ss_pred EEEcccCccCCCCCccceEEEEEccccccchhhhcc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRM 518 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~ 518 (525)
|+|+|. .+.++++|+..+++..++.|.++++-
T Consensus 548 V~D~D~----~~~ddfiGq~~lPv~~Lr~GyR~VpL 579 (599)
T PLN02952 548 VREYDM----SEKDDFGGQTCLPVSELRPGIRSVPL 579 (599)
T ss_pred EEecCC----CCCCCeEEEEEcchhHhcCCceeEeC
Confidence 999975 56799999999999999999876543
No 218
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.78 E-value=3.3e-08 Score=104.01 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=80.2
Q ss_pred cceEEEEEEeeecCC----C-----CCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009797 417 GGLLVVIVHEAQDVE----G-----KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~----~-----~~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~ 482 (525)
...|.|+|+.|++++ . ....||||+|.+.| .+++|+++.++.||+|||.|+|.+..+++ ..|.|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL-AllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL-ALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce-eEEEEE
Confidence 467999999998743 1 12579999999965 24699999999999999999999987643 689999
Q ss_pred EEEcccCccCCCCCccceEEEEEccccccchhhhcc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRM 518 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~ 518 (525)
|+|+|. .+.|+++|+..|++..++.|-++..-
T Consensus 530 V~d~D~----~~~ddfigq~~lPv~~Lr~GyR~V~L 561 (581)
T PLN02222 530 VHEYDM----SEKDDFGGQTCLPVWELSQGIRAFPL 561 (581)
T ss_pred EEECCC----CCCCcEEEEEEcchhhhhCccceEEc
Confidence 999975 56799999999999999999876543
No 219
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.77 E-value=2.3e-09 Score=110.65 Aligned_cols=98 Identities=27% Similarity=0.443 Sum_probs=84.9
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc----CCceeeeecCCCCCCeEeeEEEEEeeCC----CCCeEEE
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDP----ESQAVEL 328 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~----~~~~L~i 328 (525)
.....|.|.|+.|+++.+-|.+|-+||||+|.+.+.. ....+|+|+..|+||+|+|+|+|.|... +...+.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 4456677888999999999999999999999998754 2457999999999999999999999743 2457999
Q ss_pred EEEecCCCCCCCccEEEEEECcccCC
Q 009797 329 AVYDWEQVGKHDKMGMNVVPLKELTP 354 (525)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~L~~l~~ 354 (525)
+|+|+|-.+.+||-|++.+.|+++..
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EeeccceecccccchHHHHhhCCCCC
Confidence 99999999999999999999998864
No 220
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.77 E-value=2.5e-08 Score=105.06 Aligned_cols=98 Identities=21% Similarity=0.125 Sum_probs=81.0
Q ss_pred CcceEEEEEEeeecCCC--C-------CCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCCCCeEEE
Q 009797 416 GGGLLVVIVHEAQDVEG--K-------HHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHV 481 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~--~-------~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i 481 (525)
....|.|+|+.+++++. + ...||||+|.+-|- +++|++..++.||+|||.|+|.+..+++ ..|.|
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL-AllRf 545 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL-ALLRV 545 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce-eEEEE
Confidence 34679999999998642 1 24799999999652 3588988899999999999999987643 68999
Q ss_pred EEEEcccCccCCCCCccceEEEEEccccccchhhhcc
Q 009797 482 EVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRM 518 (525)
Q Consensus 482 ~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~ 518 (525)
+|+|++. .+.|+++|+..|++.+++.|.++..-
T Consensus 546 ~V~d~d~----~~~ddfiGQ~~lPv~~Lr~GyR~V~L 578 (598)
T PLN02230 546 EVHEHDI----NEKDDFGGQTCLPVSEIRQGIHAVPL 578 (598)
T ss_pred EEEECCC----CCCCCEEEEEEcchHHhhCccceEec
Confidence 9999975 56799999999999999999876543
No 221
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.74 E-value=1.3e-07 Score=96.95 Aligned_cols=177 Identities=19% Similarity=0.277 Sum_probs=126.0
Q ss_pred eeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCC----CCCCCccEEEEEECcccCCCCCeeEEEecccccccCC
Q 009797 297 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 372 (525)
Q Consensus 297 ~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~----~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~ 372 (525)
.+|.++.+.+||.|.+.|.+.......|.++++++|.+. ...++++|++...+..+.........+-+ .+
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~----~~-- 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLL----KP-- 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhc----cc--
Confidence 489999999999999999888877778999999999874 35678999999999998765432221111 11
Q ss_pred CCCCceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC--Ce
Q 009797 373 GQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--GE 447 (525)
Q Consensus 373 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~--~~ 447 (525)
......|.|.+.+.-.. ..-....-..+|++|..+ +.+|||..++-. ..
T Consensus 117 -~~~~~~g~iti~aee~~-------------------------~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~ 170 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDE-------------------------SDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDG 170 (529)
T ss_pred -CccCCcccEEEEeeccc-------------------------ccCceeeeeeeeeecCcccccccCCcceEEEEecCCC
Confidence 12356777777663211 111223334568888875 579999998864 22
Q ss_pred ----EEEeeeecCCCCCcccceEEEEecCC---CCCCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 448 ----ERKTKHVKKNRDPRWEEEFQFMLEEP---PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 448 ----~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
.++|.++++++||.|.+ |....... ..+..+.+.++|.+. .++++++|++..++.++.
T Consensus 171 s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~----~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 171 STQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS----NGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred ceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCC----CCCcCceeEecccHHHhc
Confidence 24999999999999998 43333321 234589999999986 467899999999888864
No 222
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.72 E-value=5.4e-08 Score=78.14 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=67.6
Q ss_pred EEEEEEeeecCCC------CCCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 420 LVVIVHEAQDVEG------KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 420 L~V~v~~a~~L~~------~~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
|.++|++|||+.. .+.+||||.+.+++. +.||++ +.||.|||.|+|.+.. ...+.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~~---- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKGG---- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCCC----
Confidence 5789999999974 357899999999987 558887 4899999999999954 3579999999963
Q ss_pred CCCCccceEEEEEccccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~ 512 (525)
+..-.+|-..+.+.+|..+
T Consensus 71 -~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred -CeecceeeehhhHHHHHHH
Confidence 3467899999999988544
No 223
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.69 E-value=5.7e-08 Score=101.68 Aligned_cols=126 Identities=25% Similarity=0.380 Sum_probs=94.3
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc---CCceeeeecCCCCCCeEe-eEEEEEeeCCCCCeEEEEEEecCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWN-EEYNFTVRDPESQAVELAVYDWEQ 335 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~nP~w~-e~f~f~v~~~~~~~L~i~v~d~~~ 335 (525)
-.|.|.|+.|++|+... .|-..|||+|.+-|.. ...++|.+..+++||+|| |+|+|.+.+|+-..|+|.|||.|-
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 56889999999999543 3556799999986643 223567778899999999 999999999998999999999999
Q ss_pred CCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCC
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE 394 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (525)
++...|||++.+|+..+..+-. ..+|... - ...-.-..|.+.+...|....
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~-y----SEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNG-Y----SEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccC-c----hhhhhhhhheeeeEeccccCc
Confidence 9988999999999999987631 1222100 0 012234556777777776544
No 224
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.69 E-value=2e-08 Score=108.78 Aligned_cols=114 Identities=23% Similarity=0.329 Sum_probs=92.2
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEECCe-----
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE----- 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~~----- 447 (525)
++..|+|.+++.|. .|.|.|.|+.|++|+- ...+||||+.|+...
T Consensus 1509 ~~iggqV~LsIsY~---------------------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~s 1561 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN---------------------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTS 1561 (1639)
T ss_pred cccCceEEEEEEEc---------------------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhh
Confidence 55677999999884 6889999999999953 357999999999753
Q ss_pred EEEeeeecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
++||+++++|+||.|||...|. ++.... ...|.++||..+. +..+.++|.+.|+|.+.... .++.+||.
T Consensus 1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~----~~en~~lg~v~i~L~~~~l~----kE~~~Wy~ 1632 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG----LLENVFLGGVNIPLLKVDLL----KESVGWYN 1632 (1639)
T ss_pred hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc----eeeeeeeeeeecchhhcchh----hhhcceee
Confidence 4599999999999999999988 333222 2589999999975 77899999999999987544 44558885
No 225
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.63 E-value=9.5e-08 Score=100.74 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=79.6
Q ss_pred eEEEEEEeeecCCCC-------CCCCcEEEEEECCe-----EEEeee-ecCCCCCcccceEEEEecCCCCCCeEEEEEEE
Q 009797 419 LLVVIVHEAQDVEGK-------HHTNPYARILFRGE-----ERKTKH-VKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS 485 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~-------~~~dPyv~v~l~~~-----~~kT~v-~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 485 (525)
.|.|.|+++++++.. ..+||||.|.+.|- ..+|++ ..++-||.|+|+|+|.+..|++ +-|.|.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEe
Confidence 899999999976541 35899999999773 358995 4578999999999999998754 689999999
Q ss_pred cccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 486 VSSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 486 ~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
++. .++|+|+|+..|++.+++.|.++++
T Consensus 696 ~d~----~~~ddF~GQ~tlP~~~L~~GyRhVp 723 (746)
T KOG0169|consen 696 YDY----IGKDDFIGQTTLPVSELRQGYRHVP 723 (746)
T ss_pred cCC----CCcccccceeeccHHHhhCceeeee
Confidence 986 6789999999999999998877654
No 226
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.63 E-value=7.4e-08 Score=97.36 Aligned_cols=119 Identities=26% Similarity=0.425 Sum_probs=95.4
Q ss_pred eeEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEe-eEEEEEeeCC--CCCeEEEEEEecC
Q 009797 259 VGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN-EEYNFTVRDP--ESQAVELAVYDWE 334 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~-e~f~f~v~~~--~~~~L~i~v~d~~ 334 (525)
.|.|-|+|..|++||-+|.. ...|.||.+.+++.. +||.+..+++||.|| +.|.|++.+. ....|.+++.|+|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t---~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT---FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccc---eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 37889999999999999864 467999999998766 599999999999999 7899999754 3678999999999
Q ss_pred CCCCCCccEEEEEECcccCCCCC----------eeEEEecccccccCCCCCCceeeEEEEEEE
Q 009797 335 QVGKHDKMGMNVVPLKELTPEEP----------SVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~~~~~----------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (525)
..+.+|-||.+.++++.|.-++. ..-|+++...+ ...+|+|.+-+.
T Consensus 79 tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivk 134 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVK 134 (1169)
T ss_pred ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEE
Confidence 99999999999999998864321 23577664322 356777776554
No 227
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.62 E-value=6.2e-08 Score=100.47 Aligned_cols=123 Identities=21% Similarity=0.309 Sum_probs=93.9
Q ss_pred EEeccCCcccCcCCCCCcEEEEEEcCCc-CCceeeeecCCCCCCeEeeEEEEEeeCC---------------CCCeEEEE
Q 009797 266 VVKAMNLKKKDLLGASDPYVKLKITEDK-LPSKKTTVKHKNLNPEWNEEYNFTVRDP---------------ESQAVELA 329 (525)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------------~~~~L~i~ 329 (525)
++.++++-+.. ++.+|||+.+...+.. ....+|++++.|.+|.|+|.|+|.+... ..-.|+++
T Consensus 137 ~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~ 215 (800)
T KOG2059|consen 137 VLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD 215 (800)
T ss_pred hhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence 34444555554 4569999999986543 2336899999999999999999998754 24568899
Q ss_pred EEe-cCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 330 VYD-WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 330 v~d-~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
+|+ .+....++|+|++.+++..+........|+.|.+.-+.+....+..-|.+++.++|.
T Consensus 216 lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 216 LWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred eccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 999 555666999999999999998666777788877665544444567789999999885
No 228
>PLN02228 Phosphoinositide phospholipase C
Probab=98.60 E-value=1.6e-07 Score=98.56 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=79.4
Q ss_pred cceEEEEEEeeecCCC---C------CCCCcEEEEEECCe-----EEEeeeecCCCCCcc-cceEEEEecCCCCCCeEEE
Q 009797 417 GGLLVVIVHEAQDVEG---K------HHTNPYARILFRGE-----ERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHV 481 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~---~------~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~i 481 (525)
...|.|+|++|++|+. . ...||||+|.+.|- +++|++++++.||+| ||.|+|.+..+++ ..|.|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL-A~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL-ALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce-eEEEE
Confidence 4579999999998731 1 23799999998652 458999988899999 9999999988644 58999
Q ss_pred EEEEcccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 482 EVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 482 ~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
.|+|++. .+.|+++|+..|+++.++.|.+++.
T Consensus 509 ~V~D~d~----~~~d~figq~~lPv~~Lr~GYR~Vp 540 (567)
T PLN02228 509 KVQDYDN----DTQNDFAGQTCLPLPELKSGVRAVR 540 (567)
T ss_pred EEEeCCC----CCCCCEEEEEEcchhHhhCCeeEEE
Confidence 9999975 5679999999999999998877654
No 229
>PLN02352 phospholipase D epsilon
Probab=98.54 E-value=5.6e-07 Score=96.76 Aligned_cols=122 Identities=16% Similarity=0.282 Sum_probs=91.5
Q ss_pred CceeEEEEEEEeccCCccc----CcC-CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE
Q 009797 257 RPVGILHVKVVKAMNLKKK----DLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY 331 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~ 331 (525)
.-.|.|.++|.+|+-+... +.. ...||||.|.+++.+. .|| .+..||.|+|+|.+.+.......+.|+|.
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence 3479999999999843221 111 1239999999997664 577 55669999999999998664457999998
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCC-eeEEEecccccccCCCCCCcee-eEEEEEEEEEecCCC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEP-SVKTLDLLKNMDLNDGQNEKSR-GQLVVEFIYKPFKEE 394 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~-G~l~l~l~~~p~~~~ 394 (525)
| ...+||.+.+|..++..++. .+.|+++...- +.... ..|++++.|.|....
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN------GKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC------CCCCCCCEEEEEEEEEEhhhC
Confidence 8 26799999999999998865 77888875421 11223 599999999998765
No 230
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.52 E-value=6.8e-08 Score=103.67 Aligned_cols=230 Identities=16% Similarity=0.205 Sum_probs=146.8
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC---------CCCeEEEE
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------ESQAVELA 329 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------~~~~L~i~ 329 (525)
.-.+++.+.+|+.|...+..+.+|||+.+...++. +.|.++.+|+||.|+++..|.-.+. .-..+.++
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs---~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQS---KETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhccccc---ceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 44567788899999999999999999999988765 5899999999999999987752211 13468899
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCCCCCC-cccccccccC
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPK-SFEESQTVQK 408 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~-~~~~~~~~~~ 408 (525)
+||.++.+.++++|++.....-... .+...|.++.+ ++...|.+.++....-.... .+- ...+...+..
T Consensus 282 ~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r--------g~~l~gd~l~a~eliq~~~~-i~~p~~~~~~~~~~ 351 (1105)
T KOG1326|consen 282 VYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR--------GAFLDGDVLIAAELIQIGKP-IPQPPPQREIIFSL 351 (1105)
T ss_pred eehhhhhchHHhhcccccceEEEec-CCccceEEeec--------ccccccchhHHHHHHhhcCC-CCCCCcccccceec
Confidence 9999999999999997765443333 23444555432 23445555444322110000 000 0000000001
Q ss_pred CCCC--CCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCC----CCCe
Q 009797 409 APEN--TPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPP----TNDR 478 (525)
Q Consensus 409 ~~~~--~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~----~~~~ 478 (525)
.|.. ...+.+.+.|-...-+|+... ....|-+-+.++++..+|-++. .-.||.++..|.+..-..+ ....
T Consensus 352 vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~pp 431 (1105)
T KOG1326|consen 352 VPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPP 431 (1105)
T ss_pred cccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCcc
Confidence 1111 112333344333334555432 3678999999999988877665 4578999887766544322 2348
Q ss_pred EEEEEEEcccCccCCCCCccceEEEEE
Q 009797 479 LHVEVCSVSSRIGLLHPKVLFQFYFIF 505 (525)
Q Consensus 479 l~i~V~d~~~~~~~~~~d~~lG~v~I~ 505 (525)
+.++|.|.+. +++....|.+.|.
T Consensus 432 l~akvvd~~~----fg~~~v~g~c~i~ 454 (1105)
T KOG1326|consen 432 LNAKVVDLRQ----FGRMEVVGQCKIL 454 (1105)
T ss_pred ceeEEEeccc----ccceeehhhhcch
Confidence 9999999986 8899999998874
No 231
>PLN02270 phospholipase D alpha
Probab=98.49 E-value=5e-07 Score=97.43 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=77.7
Q ss_pred cceEEEEEEeeecCCC---------------------CCCCCcEEEEEECCeEE-EeeeecCC-CCCcccceEEEEecCC
Q 009797 417 GGLLVVIVHEAQDVEG---------------------KHHTNPYARILFRGEER-KTKHVKKN-RDPRWEEEFQFMLEEP 473 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~---------------------~~~~dPyv~v~l~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~ 473 (525)
-|.|.++|.+|++|+. ++.+||||.|.+++.+. ||+++.+. .||+|||.|...|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 4678888888888763 24679999999998776 99999885 6999999999999875
Q ss_pred CCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 474 PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 474 ~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
...+.|.|.|.+- ++ ..+||.+.|+..++..|. +-+.||
T Consensus 87 --~~~v~f~vkd~~~----~g-~~~ig~~~~p~~~~~~g~----~i~~~~ 125 (808)
T PLN02270 87 --ASNIIFTVKDDNP----IG-ATLIGRAYIPVEEILDGE----EVDRWV 125 (808)
T ss_pred --cceEEEEEecCCc----cC-ceEEEEEEEEHHHhcCCC----ccccEE
Confidence 3689999999974 33 669999999999987664 355554
No 232
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.49 E-value=5.6e-07 Score=94.48 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=83.8
Q ss_pred ceEEEEEEeeecCCCCC--CCCcEEEEEECCe-----EE-EeeeecCCCCCccc-ceEEEEecCCCCCCeEEEEEEEccc
Q 009797 418 GLLVVIVHEAQDVEGKH--HTNPYARILFRGE-----ER-KTKHVKKNRDPRWE-EEFQFMLEEPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~~--~~dPyv~v~l~~~-----~~-kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~l~i~V~d~~~ 488 (525)
-.|.|.|+.||.|+..| ...|||+|.+-|. ++ +|.++.+..||+|| |.|+|.|.+|.. .-|.+.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~-A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF-AFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce-EEEEEEEecccc
Confidence 46889999999999753 4679999998652 33 55666788999999 999999999844 689999999975
Q ss_pred CccCCCCCccceEEEEEccccccchhhhcccCCC
Q 009797 489 RIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDP 522 (525)
Q Consensus 489 ~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~ 522 (525)
++...+||++..++..|+.|-++..-||..
T Consensus 1144 ----fs~~~FiaqA~yPv~~ik~GfRsVpLkN~y 1173 (1267)
T KOG1264|consen 1144 ----FSDPNFLAQATYPVKAIKSGFRSVPLKNGY 1173 (1267)
T ss_pred ----cCCcceeeeeecchhhhhccceeeecccCc
Confidence 888899999999999999998888887753
No 233
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.48 E-value=1.9e-07 Score=94.48 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=80.2
Q ss_pred cceEEEEEEeeecCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCccc-ceEEEEecCCCCC-CeEEEEEEEcccCc
Q 009797 417 GGLLVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRWE-EEFQFMLEEPPTN-DRLHVEVCSVSSRI 490 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~-~~l~i~V~d~~~~~ 490 (525)
.|.|.|.|..||+||.. ...|.||++.+.+.++||.+..+++||.|| +=|.|.+.+.++. +.|.|.+.|+|.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-- 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-- 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc--
Confidence 47889999999999974 467999999999999999999999999999 4699999886554 499999999997
Q ss_pred cCCCCCccceEEEEEcccccc
Q 009797 491 GLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~~ 511 (525)
.+.++.||.+.|+++-+..
T Consensus 80 --ysandaigkv~i~idpl~~ 98 (1169)
T KOG1031|consen 80 --YSANDAIGKVNIDIDPLCL 98 (1169)
T ss_pred --cccccccceeeeccChHHH
Confidence 7889999999999998743
No 234
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.23 E-value=8.9e-07 Score=96.46 Aligned_cols=107 Identities=24% Similarity=0.263 Sum_probs=87.1
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEE---eeCCCCCeEEEEEEe
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFT---VRDPESQAVELAVYD 332 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~---v~~~~~~~L~i~v~d 332 (525)
..|+|+|.|..|++|+-...+..+||||+.++.++. ..++||+++++|.||+|||...+. ........|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 378999999999999655545679999999997653 345799999999999999987765 222335789999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
.+....+.++|.+.++|.++...+....|+.+
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 99888999999999999998877665566655
No 235
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=3.2e-06 Score=80.82 Aligned_cols=98 Identities=31% Similarity=0.435 Sum_probs=81.3
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEE
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELA 329 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~ 329 (525)
.+.....-|.|++++|.+|..+|.+|.+||||..++..+. ..+++|.+.+++.||+||+.|.+.+.. .....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 4556678899999999999999999999999999987542 345789999999999999999998863 236689999
Q ss_pred EEecCCCCCCCccEEEEEECcc
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKE 351 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~ 351 (525)
|||++..+..+++|-+......
T Consensus 307 vgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred ecccCCCcCccCCCcccccccc
Confidence 9999988788999887654443
No 236
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.05 E-value=3.6e-06 Score=64.65 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=64.2
Q ss_pred EEEEEeeecCCC--C--CCCCcEEEEEEC--Ce-EEEeeeecCCCCCcccceEEEEecCCCCCC-eEEEEEEEcccCccC
Q 009797 421 VVIVHEAQDVEG--K--HHTNPYARILFR--GE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVEVCSVSSRIGL 492 (525)
Q Consensus 421 ~V~v~~a~~L~~--~--~~~dPyv~v~l~--~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~V~d~~~~~~~ 492 (525)
-+++.+|+||.- . .++.-|++--+. .- ..||+......||+|.|+|.|.+......+ .|.++|+..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~------ 75 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ------ 75 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc------
Confidence 468899999853 2 234557665442 22 349999999999999999999988655555 899999985
Q ss_pred CCCCccceEEEEEcccc
Q 009797 493 LHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~ 509 (525)
..+++.||.++++++++
T Consensus 76 ~~RKe~iG~~sL~l~s~ 92 (103)
T cd08684 76 TPRKRTIGECSLSLRTL 92 (103)
T ss_pred CCccceeeEEEeecccC
Confidence 56799999999999996
No 237
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.02 E-value=3.7e-06 Score=64.61 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=69.0
Q ss_pred EEEEEeccCCcccCcCC-CCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCCCCC
Q 009797 263 HVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 263 ~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d 339 (525)
-++++.|+||......| .+.-|++--+.-.+....||+++++..||+|.|+|.|.+... ..-.|-+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 57899999998766544 344566644432333346899999999999999999987633 35568888888 46788
Q ss_pred CccEEEEEECcccCCCC
Q 009797 340 DKMGMNVVPLKELTPEE 356 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~ 356 (525)
+.||.|.+.++++-+++
T Consensus 80 e~iG~~sL~l~s~geeE 96 (103)
T cd08684 80 RTIGECSLSLRTLSTQE 96 (103)
T ss_pred ceeeEEEeecccCCHHH
Confidence 89999999999987653
No 238
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.90 E-value=5.1e-05 Score=78.75 Aligned_cols=226 Identities=16% Similarity=0.257 Sum_probs=152.4
Q ss_pred CCCCcccCCCC-------CchHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHhcCCceeeeeEEEeEEeCCCCC
Q 009797 58 EIPLWVKCPDY-------DRVDWLNKFLELMWP------YLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLP 124 (525)
Q Consensus 58 ~~p~w~~~~~~-------E~~~WlN~~l~~~W~------~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~ 124 (525)
+.|.|...... -.|-.+|.+++.+.. .+..++.+.+...++.++.....+--++.+++.++-+|++.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 58888766322 245667788888776 24455556666666666666544434899999999999999
Q ss_pred CeEeeeEEEecC------------C-------------CeEEEEeeeeEeCCCcEEEEEEE-cceEEEEEEEeEEEEEEE
Q 009797 125 PTFQGMKVYVTD------------E-------------KELIMEPCLKWAANPNVTIGVKA-FGLKATVQVVDLQVFAQP 178 (525)
Q Consensus 125 P~i~~v~~~~~~------------~-------------~~~~le~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~g~~ 178 (525)
|.+++.+++.-+ + ..+.+=.++.|.|+.--++++.. .+.+..+.++-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998611 0 01334468889888776666654 333444555677999999
Q ss_pred EEEEeecCCCCCeeeEEEEEcCCCCeEEEEEEEc-CcCcccCcchHHHHHHHHHHHHhhcccCCccc-------cccccC
Q 009797 179 RITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLV-GADLMSIPGLYRFVQELIKTQVANMYLWPKTL-------EVPILD 250 (525)
Q Consensus 179 rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~-g~~~~~iP~l~~~i~~~i~~~l~~~~v~P~~~-------~~~i~~ 250 (525)
|+.+. ..|+ .+|+++|+..|.++-+++.- -++-+. -.+.+.|...++..+.....||++- ..|+..
T Consensus 241 r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ-~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~~ 314 (1051)
T KOG3532|consen 241 RVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQ-RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIFQ 314 (1051)
T ss_pred eEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHH-HHhHHHHHHHHHHHHHhhccCcchhhhccccccCcccc
Confidence 99986 2333 78999999999886665532 012111 1234567777788888889999852 122222
Q ss_pred CCc-----cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC
Q 009797 251 PSK-----AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE 291 (525)
Q Consensus 251 ~~~-----~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~ 291 (525)
... ..-.+.|.+.|++.++..|... .++..-||.+.+..
T Consensus 315 a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 315 ASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred cCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 111 1235689999999999988654 47788999998864
No 239
>PLN02964 phosphatidylserine decarboxylase
Probab=97.73 E-value=3.8e-05 Score=82.34 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=75.8
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEE-EEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKL-KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v-~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
.+.-.|+..+++++|+ ++ -.|+|..+ +++.+. +||.+.++|.||+||+...|.+...+....++.|||.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFET 118 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEec
Confidence 4456899999999998 33 25887665 455433 6999999999999999999999876666789999999
Q ss_pred CCCCCCCccEEEEEECcccCCCC
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
+.++.++++|.|+++|.++...+
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHH
Confidence 99999999999999988776543
No 240
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.72 E-value=0.0056 Score=60.98 Aligned_cols=230 Identities=14% Similarity=0.216 Sum_probs=148.6
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC-------CCCCeEEEEEEecC
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-------PESQAVELAVYDWE 334 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-------~~~~~L~i~v~d~~ 334 (525)
+.|+|+++++.+... ...-.+..++++... .|..+..+..|.||.....++.. .....|++++|..+
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 678999999998762 345677788887764 77788889999999888887752 24678999999988
Q ss_pred -CCCCCCccEEEEEECccc---CCC--CCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCC---CCC--Cc---c
Q 009797 335 -QVGKHDKMGMNVVPLKEL---TPE--EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE---DLP--KS---F 400 (525)
Q Consensus 335 -~~~~d~~lG~~~i~L~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~---~~~--~~---~ 400 (525)
..+..+.+|.+.++|+.. ..+ .....|++|+...+. -.+.+-+|.+.+........ +.. ++ .
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~----y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSK----YKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEccccccc----cccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 557788999999999998 544 345577777543211 12345567777766543332 010 00 0
Q ss_pred cccc-------cccC----------------CCCCCCCCcceEEEEEEeeecCCCC---------CCCCcEEEEEECCeE
Q 009797 401 EESQ-------TVQK----------------APENTPAGGGLLVVIVHEAQDVEGK---------HHTNPYARILFRGEE 448 (525)
Q Consensus 401 ~~~~-------~~~~----------------~~~~~~~~~g~L~V~v~~a~~L~~~---------~~~dPyv~v~l~~~~ 448 (525)
...+ .... -|.+.....-.|.|++..|+||..- +...-|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 0000 0000 0111122344688888899887542 123446666778888
Q ss_pred EEeeeecCCCCCccc--ceEEEEecCC--------CCCCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 449 RKTKHVKKNRDPRWE--EEFQFMLEEP--------PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 449 ~kT~v~~~t~nP~wn--e~f~f~v~~~--------~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
..|...+...+|.|. +..-+.+... .....|.|.++-. +..||++.|++..+.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g---------~~~Lg~~~v~l~~Ll 294 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG---------NQSLGSTSVPLQPLL 294 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC---------CcEEEEEEEEhhhcc
Confidence 888888888899875 3333665532 1123677766654 678999999999874
No 241
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.72 E-value=5.2e-05 Score=78.19 Aligned_cols=87 Identities=29% Similarity=0.554 Sum_probs=70.9
Q ss_pred EeccCCcccCcCCCCCcEEEEEEc---CCcCCceeeeecCCCCCCeEeeEEEEEeeCCC----CCeEEEEEEecCCCCCC
Q 009797 267 VKAMNLKKKDLLGASDPYVKLKIT---EDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQVGKH 339 (525)
Q Consensus 267 ~~A~~L~~~d~~g~~dpyv~v~~~---~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~~~~d 339 (525)
++|++|.++|..+++|||..++-. +.....++|.+.++++||.|.+ |.+...... ...+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 568999999999999999998753 2233457999999999999995 555544322 46788999999999999
Q ss_pred CccEEEEEECcccCC
Q 009797 340 DKMGMNVVPLKELTP 354 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~ 354 (525)
+++|++..++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999999975
No 242
>PLN02964 phosphatidylserine decarboxylase
Probab=97.64 E-value=9.5e-05 Score=79.36 Aligned_cols=88 Identities=14% Similarity=0.245 Sum_probs=72.7
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEE-EEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYAR-ILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~-v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
-+|++.+++++|+ .+..|||.. +++|-+..||.+.++|.||+||+...|.+..... ...++.|||.+. ++
T Consensus 52 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~s 122 (644)
T PLN02964 52 FSGIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGP-HLARISVFETNR----LS 122 (644)
T ss_pred ccCeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCc-ceEEEEEEecCC----CC
Confidence 5789999999997 334699766 5566778899999999999999999999976533 457999999986 89
Q ss_pred CCccceEEEEEccccccc
Q 009797 495 PKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~~ 512 (525)
.++.+|.+.++|.++...
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999988776433
No 243
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.55 E-value=9.3e-05 Score=61.56 Aligned_cols=94 Identities=20% Similarity=0.351 Sum_probs=68.9
Q ss_pred EEEEEEeccCCcccCc-------------CCCCCcEEEEEEcC-CcCCceeeeecCCCCCCeEeeEEEEEee--------
Q 009797 262 LHVKVVKAMNLKKKDL-------------LGASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVR-------- 319 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~-------------~g~~dpyv~v~~~~-~~~~~~kT~v~~~t~nP~w~e~f~f~v~-------- 319 (525)
|.|.|++|.+|+.... .-.-++||++.+.- ......+|+++-++..|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688999999975321 01238999999642 1223468999999999999999999875
Q ss_pred C-------CCCCeEEEEEEecCCC----------CCCCccEEEEEECcccCCC
Q 009797 320 D-------PESQAVELAVYDWEQV----------GKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 320 ~-------~~~~~L~i~v~d~~~~----------~~d~~lG~~~i~L~~l~~~ 355 (525)
. .+...+.++||+.+.. .+|-+||.+.+|+.+|...
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 1 1356789999997632 2455899999999998754
No 244
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.54 E-value=0.00026 Score=58.95 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=72.1
Q ss_pred EEEEEEeeecCCCC----------------CCCCcEEEEEEC----CeEEEeeeecCCCCCcccceEEEEec--------
Q 009797 420 LVVIVHEAQDVEGK----------------HHTNPYARILFR----GEERKTKHVKKNRDPRWEEEFQFMLE-------- 471 (525)
Q Consensus 420 L~V~v~~a~~L~~~----------------~~~dPyv~v~l~----~~~~kT~v~~~t~nP~wne~f~f~v~-------- 471 (525)
|.|.|++|.+|... =..|+||++.+. ++.++|+++-++-.|.|+..++|.|.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 45778888877531 146899999953 35679999999999999999999998
Q ss_pred CC------CCCCeEEEEEEEcccCccC------CCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 472 EP------PTNDRLHVEVCSVSSRIGL------LHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 472 ~~------~~~~~l~i~V~d~~~~~~~------~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
.. .....+.++||.++.+..- -.+|-.||.+.|++.++.. +..--..||
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~---~rsGitGW~ 141 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLT---KRSGITGWY 141 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhh---cccCccccc
Confidence 11 1124799999998643210 2357799999999998743 334445565
No 245
>PLN02352 phospholipase D epsilon
Probab=97.37 E-value=0.00052 Score=74.39 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=64.8
Q ss_pred CcceEEEEEEeeecCCCC--------CCCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEGK--------HHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~--------~~~dPyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
--|.|.++|.+|+-+... ...||||.|.+++.+. || .+..||+|+|.|...|... .+..+.|.|.|.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~ 83 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK 83 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC
Confidence 346677777777532110 1239999999988765 88 5566999999999999885 435799999883
Q ss_pred ccCccCCCCCccceEEEEEccccccch
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
..+||.+.|+..++..|.
T Consensus 84 ---------~~~ig~~~~p~~~~~~g~ 101 (758)
T PLN02352 84 ---------CSILGRFHIQAHQIVTEA 101 (758)
T ss_pred ---------CeEEEEEEEEHHHhhCCC
Confidence 679999999999987663
No 246
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.00028 Score=68.95 Aligned_cols=90 Identities=21% Similarity=0.274 Sum_probs=73.2
Q ss_pred CcceEEEEEEeeecCCCC----CCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
..|.+.|.|++|++|..+ ..++|||+||+.+. +++|+...+|.+|-|.+...|.-.. ....|.+.||..
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--PGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC--CccEEEEEEecc
Confidence 678899999999999753 36899999999653 4599999999999998877776543 356999999976
Q ss_pred ccCccCCCCCccceEEEEEccccc
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
-.+ ...+.++|.++|-+.++-
T Consensus 345 ygR---md~k~fmg~aqi~l~eL~ 365 (405)
T KOG2060|consen 345 YGR---MDHKSFMGVAQIMLDELN 365 (405)
T ss_pred ccc---cchHHHhhHHHHHhhhhc
Confidence 433 678899999999998873
No 247
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.00024 Score=69.44 Aligned_cols=109 Identities=26% Similarity=0.425 Sum_probs=85.2
Q ss_pred CCceeEEEEEEEeccCCcccCcCC-CCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE-
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY- 331 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~- 331 (525)
-...|.+.|.|++|++|..+...+ .++|||+|++.+.. ..+.+|+...+|.+|-+.+...|.-. +....|.+.||
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~g 343 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWG 343 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEec
Confidence 345899999999999998765433 68999999986543 34568999999999988877666654 34678999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCC-CeeEEEecc
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEE-PSVKTLDLL 365 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~l~ 365 (525)
|+.++..+.|+|.+.+-+.+|.... ....|+++.
T Consensus 344 dygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf 378 (405)
T KOG2060|consen 344 DYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF 378 (405)
T ss_pred cccccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence 5677778889999999999998765 556677664
No 248
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.80 E-value=0.011 Score=52.46 Aligned_cols=92 Identities=24% Similarity=0.325 Sum_probs=65.4
Q ss_pred ceEEEEEEeeecCCCCCCCCcEEEEEE--CCeEE----EeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccC
Q 009797 418 GLLVVIVHEAQDVEGKHHTNPYARILF--RGEER----KTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSR 489 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~~~~dPyv~v~l--~~~~~----kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~ 489 (525)
..++|+|+++.+++....+|-||++.+ +++.. .|+.+.. .++.|||-.+|.+. +.+.+..|.|+||+....
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~ 86 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR 86 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence 468899999999987666788888854 44432 4554444 68999998888765 445677999999998642
Q ss_pred ccCCCCCccceEEEEEccccc
Q 009797 490 IGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 490 ~~~~~~d~~lG~v~I~l~~~~ 510 (525)
.+.-.....||.+.+.|-+..
T Consensus 87 ~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 87 KGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred cCCCCceEEEEEEEEEEECCC
Confidence 110012357999999998854
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.78 E-value=0.0014 Score=64.90 Aligned_cols=125 Identities=16% Similarity=0.210 Sum_probs=90.9
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEc--CCcCCceeeeecCCCCCCeEeeEEEEEeeCC-----------CCC
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKIT--EDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-----------ESQ 324 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~--~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-----------~~~ 324 (525)
....|.+.|+++.+++........|-|+.+.+. .+.....+|.++++|.+|.|+|.|.+.+..- ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 455677788888887755433345778887763 2233346899999999999999999998651 134
Q ss_pred eEEEEEEecCC-CCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 325 AVELAVYDWEQ-VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 325 ~L~i~v~d~~~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
.+.|++|++.. +++|.++|.+.+.|..|...-.....+++... .....|.|.+.++..
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEe
Confidence 58999999875 46788999999999999877666666666321 235678888887764
No 250
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.49 E-value=0.066 Score=47.50 Aligned_cols=89 Identities=22% Similarity=0.328 Sum_probs=60.1
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCC-ceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEec
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 333 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~ 333 (525)
..++|+|+++.++.-.+ .+|-||.+.+ ++.... ...|+.+.. .++.|||...|.+. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999987543 4688888865 332221 123443333 67999999888765 2 2367899999997
Q ss_pred CCCC----CCCccEEEEEECccc
Q 009797 334 EQVG----KHDKMGMNVVPLKEL 352 (525)
Q Consensus 334 ~~~~----~d~~lG~~~i~L~~l 352 (525)
...+ ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 224699999888763
No 251
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.30 E-value=0.028 Score=50.77 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=66.9
Q ss_pred ceEEEEEEeeecCCC-CCCCCcEEEEE--ECCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEccc
Q 009797 418 GLLVVIVHEAQDVEG-KHHTNPYARIL--FRGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 418 g~L~V~v~~a~~L~~-~~~~dPyv~v~--l~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~ 488 (525)
..++|+|+++.++.. ....+-||++. .|++. ..|+.+....++.|||.++|.+. +.|.+..|.|.||+...
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 368999999999986 44567788764 45543 26666665678999999888764 55667799999998753
Q ss_pred Cc-c-----------CCCCCccceEEEEEccccccc
Q 009797 489 RI-G-----------LLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 489 ~~-~-----------~~~~d~~lG~v~I~l~~~~~~ 512 (525)
.. + .-+.+..||.+.+.|-+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~ 123 (173)
T cd08693 88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQ 123 (173)
T ss_pred cccccccccccccccccCcceEEEEEeEEEEcccch
Confidence 11 0 011246999999999886443
No 252
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.15 E-value=0.027 Score=56.23 Aligned_cols=102 Identities=11% Similarity=0.190 Sum_probs=81.7
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCC------CCCCeEEEEEEEcccCccCC
Q 009797 420 LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP------PTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 420 L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~------~~~~~l~i~V~d~~~~~~~~ 493 (525)
+.|.|.+|++.+......-.+..+++|+...|..+.++..|.||....+.+... ..+..|+++++.-+.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~---~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS---T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC---C
Confidence 678999999999865667799999999999999999999999999999988743 1234899999988732 4
Q ss_pred CCCccceEEEEEcccc-ccchhhhcccCCCCC
Q 009797 494 HPKVLFQFYFIFYLVH-RFKQECCRMKNDPFR 524 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~-~~~~~~~~~~~~~~~ 524 (525)
+..+.+|++.++|.+. ....+.-..+..||+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~ 110 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYK 110 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeE
Confidence 6789999999999987 112233358888986
No 253
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.05 E-value=0.27 Score=42.81 Aligned_cols=124 Identities=23% Similarity=0.334 Sum_probs=78.6
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeC--------CCCCeEEE
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRD--------PESQAVEL 328 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~--------~~~~~L~i 328 (525)
..-.+.+++++..+++. ....-||+...+.......+|.... .+..-.|||+|.+.+.- .....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 34567899999999876 2233455555444331122333332 34457899999887651 12446889
Q ss_pred EEEecCCCCCCCccEEEEEECcccCCCC--CeeEEEecccccccCCCCCCceeeEEEEEEEEEecCC
Q 009797 329 AVYDWEQVGKHDKMGMNVVPLKELTPEE--PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 393 (525)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~L~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (525)
.|+.....++...+|.+.++|.+..... .....+.+... ......|++++.+.+..+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECcc
Confidence 9988753333468999999999998753 44455554321 255678889988887643
No 254
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.69 E-value=0.2 Score=43.92 Aligned_cols=128 Identities=14% Similarity=0.192 Sum_probs=88.1
Q ss_pred CceeEEEEEEEeccCCcccCc--CCCCCcEEE--EEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC----------
Q 009797 257 RPVGILHVKVVKAMNLKKKDL--LGASDPYVK--LKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE---------- 322 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~--v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~---------- 322 (525)
...-.|.++|..++-....-. .+..+.-.. +.+++++ ++|+.+..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 345678888888774432111 033444444 4455655 58999999999999999999987431
Q ss_pred ---CCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCe--eEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 323 ---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS--VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 323 ---~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
.+.+.+.|.--|..+...++|+-.++.+.+...... ....++... . .......|-|.++++..|.
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~-~---~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV-G---PESKVPVGILDLRLELLPN 152 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc-C---CCCccceeEEEEEEEeecC
Confidence 456888888877777778999999999888766543 555555321 1 1123578999999999885
No 255
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=95.68 E-value=0.024 Score=54.33 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=79.8
Q ss_pred CCCceeEEEEEEEeccCCcccCc--CCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d 332 (525)
.....|+|.+++..+++|..... .-.-+-||++..+.+. ..+|.+.....--.|.|+|...+.+ ...+.+-||.
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 34568999999999999975432 2356899999987554 2466666555556799999998875 4678999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCC-CeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEE-PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
|+.-.++++.-...+.+..+.... .+...+. -.++|++.+++.+.
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLA 167 (442)
T ss_pred cCchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccC
Confidence 987666765433344444443322 2333332 35678888877653
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.40 E-value=0.026 Score=61.11 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=71.1
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEEEEECC-------eEEEeeeec-CCCCCcccc-eEEEEecCCCCCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG-------EERKTKHVK-KNRDPRWEE-EFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~-------~~~kT~v~~-~t~nP~wne-~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
-.+.+.|+|++++=|.. .....||.|.+-| +..+|+++. ++.||+|+| .|.|.=--.+.-.+|.|.|++.
T Consensus 701 IA~t~sV~VISgqFLSd-rkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSD-RKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred EEeeEEEEEEeeeeccc-cccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 45678999999988876 3467999999865 234888877 569999996 6777632222346999999998
Q ss_pred ccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
. ..+||+-.++++.+..|.++..
T Consensus 780 g--------gK~ig~RIlpvd~l~~GYrhv~ 802 (1189)
T KOG1265|consen 780 G--------GKFIGQRILPVDGLNAGYRHVC 802 (1189)
T ss_pred C--------CceeeeeccchhcccCcceeEE
Confidence 4 6899999999999988876543
No 257
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.33 E-value=0.089 Score=46.74 Aligned_cols=93 Identities=25% Similarity=0.376 Sum_probs=60.8
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcC-CceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEec
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 333 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~ 333 (525)
..++|++....++...+ ....+-||.+.+ ++... ....|.......++.|||...|.+. + +....|.+++|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35678888888776521 234566777755 33321 2223433333468999999988764 2 2367899999998
Q ss_pred CCCC--CCCccEEEEEECcccC
Q 009797 334 EQVG--KHDKMGMNVVPLKELT 353 (525)
Q Consensus 334 ~~~~--~d~~lG~~~i~L~~l~ 353 (525)
+..+ ++..||.+.++|-+-.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7544 4678999999987743
No 258
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.23 E-value=0.084 Score=47.72 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=60.1
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcC-CceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEec
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 333 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~ 333 (525)
..++|+|+++.++... ....+-||.+.+ ++... ....|+.+..+.++.|||.+.|.+. + +....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4689999999999862 234667777654 43332 1235555554567999999988764 2 2367899999997
Q ss_pred CCCC----------------CCCccEEEEEECccc
Q 009797 334 EQVG----------------KHDKMGMNVVPLKEL 352 (525)
Q Consensus 334 ~~~~----------------~d~~lG~~~i~L~~l 352 (525)
.... .+..||.+.++|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5322 135777777776653
No 259
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.08 E-value=0.13 Score=45.62 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=62.2
Q ss_pred ceEEEEEEeeecCCC--CCCCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcc
Q 009797 418 GLLVVIVHEAQDVEG--KHHTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVS 487 (525)
Q Consensus 418 g~L~V~v~~a~~L~~--~~~~dPyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~ 487 (525)
..++|.++...++.. ....+-||++.+ +++. ..|.......++.|||..+|.+. +.+.+..|.|.||+.+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 357788888887764 234566776644 4442 24444444478999999998854 4566779999999986
Q ss_pred cCccCCCCCccceEEEEEccccc
Q 009797 488 SRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 488 ~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
... ...+..||.+.++|-+..
T Consensus 88 ~~~--~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 88 EPG--SKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred cCC--CCcceEEEEEeEEeEccc
Confidence 421 124689999999998853
No 260
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.92 E-value=0.25 Score=38.78 Aligned_cols=85 Identities=22% Similarity=0.345 Sum_probs=59.7
Q ss_pred CCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCee
Q 009797 280 ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 359 (525)
Q Consensus 280 ~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~ 359 (525)
-++-.+++.+++... .+|.-+.. .+..|++.|.+.+.. +..|.|.||-+|- ..+.|...+-|++... .
T Consensus 8 ~~eV~avLklDn~~V--gqT~Wk~~-s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----~ 75 (98)
T cd08687 8 CSEVSAVLKLDNTVV--GQTQWKPK-SNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----E 75 (98)
T ss_pred ccceEEEEEEcCeEE--eecccccc-ccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----c
Confidence 367788898886543 45655433 478899999999964 5789999998763 4577888888887322 2
Q ss_pred EEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 360 KTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
..++ -.+.|.+...++|
T Consensus 76 ~~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 76 VQLD------------MEPQLCLVAELTF 92 (98)
T ss_pred ceec------------cccccEEEEEEEe
Confidence 2222 3567888888877
No 261
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.81 E-value=0.057 Score=58.65 Aligned_cols=90 Identities=22% Similarity=0.370 Sum_probs=68.2
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc----CCceeeeecC-CCCCCeEee-EEEEE-eeCCCCCeEEEEEE
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKH-KNLNPEWNE-EYNFT-VRDPESQAVELAVY 331 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~-~t~nP~w~e-~f~f~-v~~~~~~~L~i~v~ 331 (525)
.+.+.|+|+++.=|..++ ...||.|.+-+-. ...++|++.. ++.||+|+| .|.|. |--++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 578899999999997654 4589999985422 2346777765 778999996 46664 33345578999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
+.+ ..++|+=.+|+..+..+-
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc
Confidence 975 469999999999998874
No 262
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.29 E-value=0.17 Score=45.69 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=62.7
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCC-ceeeeecC----CCCCCeEeeEEEEEee--C-CCCCeEEE
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKH----KNLNPEWNEEYNFTVR--D-PESQAVEL 328 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~kT~v~~----~t~nP~w~e~f~f~v~--~-~~~~~L~i 328 (525)
...+.|+|.++.+++........|-|+.+.+ ++.... ...|+... -...+.|||...|.+. + +....|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4568899999999987654445788888865 333221 12333211 1235779999888774 2 23668999
Q ss_pred EEEecCCCC---------CCCccEEEEEECccc
Q 009797 329 AVYDWEQVG---------KHDKMGMNVVPLKEL 352 (525)
Q Consensus 329 ~v~d~~~~~---------~d~~lG~~~i~L~~l 352 (525)
++|+....+ .+..||.+.++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976543 356899999888764
No 263
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=94.15 E-value=0.028 Score=55.86 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=72.6
Q ss_pred CcceEEEEEEeeecCCCC---CCCCcEEEEEEC---C--eEEEeeeecCCCCCcccceEEEEecCCCC----------CC
Q 009797 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFR---G--EERKTKHVKKNRDPRWEEEFQFMLEEPPT----------ND 477 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~---~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~----------~~ 477 (525)
....|.+.|.++++++.. ...|.|+++.+. + ++.+|.+++.|.+|.|+|.|...+...+. ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 455678888889888753 357889998873 2 34489999999999999999999986321 12
Q ss_pred eEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 478 RLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 478 ~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
-+.|+++.+. |++++|.++|.+.|.|.-+...
T Consensus 445 g~kfeifhkg---gf~rSdkl~gt~nikle~Len~ 476 (523)
T KOG3837|consen 445 GKKFEIFHKG---GFNRSDKLTGTGNIKLEILENM 476 (523)
T ss_pred CeeEEEeecc---ccccccceeceeeeeehhhhcc
Confidence 5889999985 3478999999999999876443
No 264
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.07 E-value=0.15 Score=45.32 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=52.8
Q ss_pred CCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccCccCCCCCccceEEEEEc
Q 009797 435 HTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFY 506 (525)
Q Consensus 435 ~~dPyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l 506 (525)
.+|-||++.+ +++. ..|+.+.-+..+.|||-.+|.|. +.+.+..|.|+|||... .+....+|.+.++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~----~~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG----TGKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC----CCCceEEEEEEEee
Confidence 4677777754 4442 26666666778899998888875 44567799999999864 23577999999999
Q ss_pred ccc
Q 009797 507 LVH 509 (525)
Q Consensus 507 ~~~ 509 (525)
-+.
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 885
No 265
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.98 E-value=0.17 Score=45.00 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=51.8
Q ss_pred CCCCcEEEEEE--cCCcC-CceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEecCCCCCCCccEEEEEECccc
Q 009797 279 GASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352 (525)
Q Consensus 279 g~~dpyv~v~~--~~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l 352 (525)
..+|-||.+.+ ++... ....|+.+.-+..+.|||...|.+. + +....|.|+||+.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677888765 22221 1125555555667899999888875 2 23678999999987666677999999988764
No 266
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.89 E-value=0.34 Score=43.79 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=45.0
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCCceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEecC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWE 334 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~ 334 (525)
.++|+|+++..+ ..+......-||++.+ ++......+|+.+.-+.++.|||...|.+. + +....|.|+||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 467788888643 2222222335666543 333222235666666778999998888765 2 23678999999974
No 267
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.60 E-value=0.58 Score=42.32 Aligned_cols=93 Identities=12% Similarity=0.166 Sum_probs=59.1
Q ss_pred eEEEEEEeeecCCCCCC--CCcEEEEE--ECCeE---EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccC
Q 009797 419 LLVVIVHEAQDVEGKHH--TNPYARIL--FRGEE---RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSR 489 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~~~--~dPyv~v~--l~~~~---~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~ 489 (525)
.++++|+++.++..... ..-||++. .+++. .+|+.+.-+.+|.|||-++|.+. +.+.+..|.|.||+....
T Consensus 11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~ 90 (178)
T cd08399 11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAP 90 (178)
T ss_pred CEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecC
Confidence 46777888764433222 23455553 34432 26666666788999998888865 445667999999997321
Q ss_pred c------c------CCCCCccceEEEEEcccccc
Q 009797 490 I------G------LLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 490 ~------~------~~~~d~~lG~v~I~l~~~~~ 511 (525)
. | .-..+..||.+.+.|-+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~ 124 (178)
T cd08399 91 ALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF 124 (178)
T ss_pred cccccccccccccccccccceEEEEEEEEEcCCC
Confidence 0 0 00125689999999988543
No 268
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=93.21 E-value=0.65 Score=40.79 Aligned_cols=89 Identities=20% Similarity=0.285 Sum_probs=61.5
Q ss_pred CcceEEEEEEeeecCCC-----CCCCCc--EEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC------------CC
Q 009797 416 GGGLLVVIVHEAQDVEG-----KHHTNP--YARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP------------TN 476 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~-----~~~~dP--yv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~------------~~ 476 (525)
....|++.|..++-.-. .+..+. ++-+.+++++++|+.+..+.+|.|+|.|-|.++... ..
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 56678889888874321 023333 444556899999999999999999999999998652 23
Q ss_pred CeEEEEEEEcccCccCCCCCccceEEEEEccc
Q 009797 477 DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 477 ~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
+.+++-|.-.+. .+...++|+-.+++..
T Consensus 87 ~pihivli~~d~----~~~~~Lv~s~~ldWR~ 114 (156)
T PF15627_consen 87 DPIHIVLIRTDP----SGETTLVGSHFLDWRK 114 (156)
T ss_pred CceEEEEEEecC----CCceEeeeeceehHHH
Confidence 478888877664 2334666666655443
No 269
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.39 E-value=0.81 Score=41.31 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=62.6
Q ss_pred cceEEEEEEeeecCCCC---CCCCcEEEEEE--CCeEE----Eeeeec----CCCCCcccceEEEEec--CCCCCCeEEE
Q 009797 417 GGLLVVIVHEAQDVEGK---HHTNPYARILF--RGEER----KTKHVK----KNRDPRWEEEFQFMLE--EPPTNDRLHV 481 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~l--~~~~~----kT~v~~----~t~nP~wne~f~f~v~--~~~~~~~l~i 481 (525)
...+.|+|.++.+++.. ...|-|+++.+ +++.. .|+... ....+.|||-.+|.+. +.+.+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 45688999999999873 24777888754 44432 444322 2346779998888765 4456679999
Q ss_pred EEEEcccCc-c----CCCCCccceEEEEEcccc
Q 009797 482 EVCSVSSRI-G----LLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 482 ~V~d~~~~~-~----~~~~d~~lG~v~I~l~~~ 509 (525)
.+|+..... + .-..+..||.+.+.|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976420 0 001357999999999885
No 270
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.29 E-value=0.62 Score=40.59 Aligned_cols=55 Identities=22% Similarity=0.409 Sum_probs=40.0
Q ss_pred eeeecCCC-CCCeEeeEEEEEee--C-CCCCeEEEEEEecCCCCCC----CccEEEEEECccc
Q 009797 298 KTTVKHKN-LNPEWNEEYNFTVR--D-PESQAVELAVYDWEQVGKH----DKMGMNVVPLKEL 352 (525)
Q Consensus 298 kT~v~~~t-~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~~~~~d----~~lG~~~i~L~~l 352 (525)
.|+...-+ .++.|||...|.+. + +....|.|+||+.+..... ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555555 79999999888875 2 3467899999998765554 6899999998776
No 271
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=91.86 E-value=0.7 Score=40.25 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=40.8
Q ss_pred EeeeecCC-CCCcccceEEEEe--cCCCCCCeEEEEEEEcccCccCCCCC----ccceEEEEEcccc
Q 009797 450 KTKHVKKN-RDPRWEEEFQFML--EEPPTNDRLHVEVCSVSSRIGLLHPK----VLFQFYFIFYLVH 509 (525)
Q Consensus 450 kT~v~~~t-~nP~wne~f~f~v--~~~~~~~~l~i~V~d~~~~~~~~~~d----~~lG~v~I~l~~~ 509 (525)
.|+.+..+ .++.|||.++|.+ .+.+.+..|.|.|++.+.. ..+ ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~----~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK----KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS----TTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC----CccccceeEEEEEEEEeECC
Confidence 56666666 8999999888875 4556777999999998752 223 7999999999885
No 272
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=91.44 E-value=1.9 Score=39.26 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=42.1
Q ss_pred CceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCCC--CCCccEEEEEECc
Q 009797 295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVG--KHDKMGMNVVPLK 350 (525)
Q Consensus 295 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~--~d~~lG~~~i~L~ 350 (525)
..++|.+...+.+|.|+|++.+.+... ....|.|++++..... ....+|.+-+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 346888999999999999999988643 3567889888754322 1257888888884
No 273
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=91.32 E-value=3 Score=37.48 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=53.7
Q ss_pred CCCcEEEEEEcCCcCCceeeeecC--CCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCC
Q 009797 280 ASDPYVKLKITEDKLPSKKTTVKH--KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 280 ~~dpyv~v~~~~~~~~~~kT~v~~--~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~ 355 (525)
+..-|+++.++++.. .+|+... ....-.|+|.|.+.+... -..|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 446799999987664 4555443 333456889999999764 5789999999886 6788999999998765543
No 274
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=90.03 E-value=3 Score=38.12 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=42.0
Q ss_pred CceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCC-CC---CCccEEEEEECc
Q 009797 295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV-GK---HDKMGMNVVPLK 350 (525)
Q Consensus 295 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~-~~---d~~lG~~~i~L~ 350 (525)
...+|.+...+.+|.|+|++.+.+... ....|.|++++.... .+ ...+|.+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888899999999999988632 366899999886432 12 246898888885
No 275
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=87.46 E-value=3.6 Score=37.57 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=34.6
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEEEecCCCCC---CCccEEEEEECcc
Q 009797 296 SKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVGK---HDKMGMNVVPLKE 351 (525)
Q Consensus 296 ~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~~~~---d~~lG~~~i~L~~ 351 (525)
...|.+...+.+|.|+|+|.+.+.... ...|.|++++...-.+ +..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 467888888899999999999987432 5679999998754221 1689999999988
No 276
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.69 E-value=3 Score=33.87 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=45.7
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCC-ceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEecC
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWE 334 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~ 334 (525)
+.+++..+.+.........++-||.+.+ ++.... ...|+.+.-...+.|||...|.+. + +....|.+++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666654432223578888865 333221 124555555556899999888764 2 23678999999864
No 277
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=83.84 E-value=3.4 Score=37.70 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=35.2
Q ss_pred EEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccc
Q 009797 449 RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
..|.+..++.+|.|+|+|.+.++..... .-|.|++++.....+ -.++..+|.+.++|.+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~-~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES-KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS-S-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc-cCccceeEEEEEEeee
Confidence 4788889999999999999999875333 378888888754311 1112799999999988
No 278
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=83.28 E-value=7.2 Score=31.60 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=45.4
Q ss_pred EEEEEEeeecCCCCC---CCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEccc
Q 009797 420 LVVIVHEAQDVEGKH---HTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 420 L~V~v~~a~~L~~~~---~~dPyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~ 488 (525)
+.+.+..+.+.+... .++-||++.+ +++. ..|+.+.-...+.|||-.+|.+. +.+.+..|.+.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 455666666665421 2367777754 4443 25665555667899998888765 44566799999999753
No 279
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=80.17 E-value=6.2 Score=36.00 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=41.9
Q ss_pred EEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccc
Q 009797 449 RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
.+|.+..++.+|.|+|++...++..... .-|.++++...... -.....+|..-++|.+
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~--k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD--KGEKKLFGFSFVPLMR 113 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc--CCCCCceEEEEEeecc
Confidence 4889999999999999999999865333 36777776653210 0113679999999976
No 280
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=79.80 E-value=12 Score=33.63 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=50.9
Q ss_pred CCCcEEEEEECCeEE-EeeeecC--CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 435 HTNPYARILFRGEER-KTKHVKK--NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 435 ~~dPyv~v~l~~~~~-kT~v~~~--t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
...-|+++.++++.. +|+...- .-.=.|||.|.+.+... -++|.++||.... ..+..|+.+.+++-..
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~--Pesi~l~i~E~~~-----~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW--PESIKLEIYEKSG-----LSDRLLAEVFVPVPGS 106 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC--CCEEEEEEEEccC-----ccceEEEEEEeeCCCC
Confidence 356699999999865 5554433 23344899999999875 3689999999952 4689999999987664
No 281
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=77.18 E-value=21 Score=30.75 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=55.6
Q ss_pred ceEEEEEEeeecCCCCCCCCcEEEEEECCeE---EEeeee-cCCCCCcccceEEEEecCC---C---CC-CeEEEEEEEc
Q 009797 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEE---RKTKHV-KKNRDPRWEEEFQFMLEEP---P---TN-DRLHVEVCSV 486 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~---~kT~v~-~~t~nP~wne~f~f~v~~~---~---~~-~~l~i~V~d~ 486 (525)
-.+.+.|++..+++. ....-||+...++.. .+|... .....-.|||.|.+.+.-. . .. ..+.|.|+..
T Consensus 7 f~~~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~ 85 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEV 85 (143)
T ss_pred EEEEEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEe
Confidence 356788888888886 223334444444443 244333 2445567999999887521 1 12 2688888887
Q ss_pred ccCccCCCCCccceEEEEEcccccc
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
.. -++...+|.+.|+|.+...
T Consensus 86 ~~----~~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 86 DG----SGKKKVLGKVSINLAEYAN 106 (143)
T ss_pred cC----CCccceEEEEEEEHHHhhC
Confidence 42 1223699999999999754
No 282
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=76.15 E-value=18 Score=28.72 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=37.0
Q ss_pred CCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009797 436 TNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 436 ~dPyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 488 (525)
++-.+.+.+.+... +|.-+.. .+..|++.|.+.+... ..|.|.|+-+|.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdRs---RELEI~VywrD~ 58 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELERS---RELEIAVYWRDW 58 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeecc---cEEEEEEEEecc
Confidence 56678888877544 6665443 5788999999998753 689999998864
No 283
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=75.73 E-value=12 Score=30.84 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=44.2
Q ss_pred eeeeecCCCCCCeEeeEEEEEeeCC-------CCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCC--eeEEEecccc
Q 009797 297 KKTTVKHKNLNPEWNEEYNFTVRDP-------ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP--SVKTLDLLKN 367 (525)
Q Consensus 297 ~kT~v~~~t~nP~w~e~f~f~v~~~-------~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~--~~~~~~l~~~ 367 (525)
..|.++. +.+|.+|-+-.+.|... .+..+.++++..- ......+|.+.+++..+.+... ......+..
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g- 89 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGERIHGSATLVG- 89 (107)
T ss_dssp EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S--EEEEEEE-B-
T ss_pred eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCceEEEEEEEec-
Confidence 4666665 78999998888888632 2567999999875 3346789999999999985543 223333321
Q ss_pred cccCCCCCCceeeEEEEEEEEE
Q 009797 368 MDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 368 ~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
.++..-|.|...++..
T Consensus 90 ------~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 90 ------VSGEDFGTLEYWIRLR 105 (107)
T ss_dssp ------SSS-TSEEEEEEEEEE
T ss_pred ------cCCCeEEEEEEEEEec
Confidence 1234778888777653
No 284
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=74.41 E-value=34 Score=31.22 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=40.9
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCC--CC-------CCCccEEEEEECcc
Q 009797 296 SKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQ--VG-------KHDKMGMNVVPLKE 351 (525)
Q Consensus 296 ~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~--~~-------~d~~lG~~~i~L~~ 351 (525)
...|.+...+.+|.|.|++.+.+.-. ....|.|+.|+..- .. ....+|-+-+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 46788888899999999999888632 35679999998652 11 12457877777755
No 285
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=73.59 E-value=9.2 Score=34.66 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=39.4
Q ss_pred eeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCC-----CCCCccEEEEEECcc
Q 009797 297 KKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV-----GKHDKMGMNVVPLKE 351 (525)
Q Consensus 297 ~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~-----~~d~~lG~~~i~L~~ 351 (525)
++|.+..+ .+|.|+|++.+.+... ....|.|++|+...- .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999998643 367899999987632 235578999988875
No 286
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=73.33 E-value=13 Score=34.10 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=42.7
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
..+|.+..+..+|.|+|++...++..... .-|.++++.......--..+..+|..-++|..
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~ 115 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQ 115 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeec
Confidence 45888999999999999999999865333 36888886653210000123579999999973
No 287
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=72.05 E-value=48 Score=29.64 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=55.5
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEEC---------C-e-EEEeeeecCC-----CCCcccceEEEEecCCCCC--CeEEE
Q 009797 420 LVVIVHEAQDVEGKHHTNPYARILFR---------G-E-ERKTKHVKKN-----RDPRWEEEFQFMLEEPPTN--DRLHV 481 (525)
Q Consensus 420 L~V~v~~a~~L~~~~~~dPyv~v~l~---------~-~-~~kT~v~~~t-----~nP~wne~f~f~v~~~~~~--~~l~i 481 (525)
+.-.|.+|.+... .+-||+-.+. + . .-.|...+.+ ..-.||..|++.+...... ..|.+
T Consensus 4 v~G~I~~a~~f~~---~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 4 VIGEIESAEGFEE---DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEEEEECCCC---CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 3456788887664 4678887762 1 2 2356555432 3355999888887654222 38999
Q ss_pred EEEEcccCccCCCCCccceEEEEEccc
Q 009797 482 EVCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 482 ~V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
+|+..|. .+++...|+-.+.|-.
T Consensus 81 ~V~~~D~----~gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 81 QVYSLDS----WGRDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEcc----cCCeEEeEEeEEEeCC
Confidence 9999986 7889999997766643
No 288
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=71.69 E-value=9 Score=42.71 Aligned_cols=107 Identities=12% Similarity=0.217 Sum_probs=75.0
Q ss_pred CCcEEEEEEcCCcCCceeeeecCCC-CCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCee
Q 009797 281 SDPYVKLKITEDKLPSKKTTVKHKN-LNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 359 (525)
Q Consensus 281 ~dpyv~v~~~~~~~~~~kT~v~~~t-~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~ 359 (525)
.++|+.+.+..... .+|....+. .+|.|.+.|....... ...+.+++-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~~~~~--~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARY--RRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeechhhh--hchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 58999999886554 466666666 7899999998777654 4578888888887776889999999999999876666
Q ss_pred EEEecccccccCCCCCCceeeEEEEEEEEEecCCC
Q 009797 360 KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE 394 (525)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (525)
.+++++..- .......-.+.+++.|.+....
T Consensus 215 ~~~~Il~~d----~~~~~~~~~~~~~~~~~~~~~~ 245 (887)
T KOG1329|consen 215 GWFPILDND----GKPHQKGSNESLRLGFTPMEKD 245 (887)
T ss_pred ceeeeeccC----CccccCCcccceEEeeEeechh
Confidence 666654311 1112222356667777776543
No 289
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=68.17 E-value=14 Score=33.42 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=40.7
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCCCC------CCccEEEEEECcc
Q 009797 296 SKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGK------HDKMGMNVVPLKE 351 (525)
Q Consensus 296 ~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~------d~~lG~~~i~L~~ 351 (525)
...|.|...+.+|.|+|++.+.+.-. ....|.|+.|+.+.-.+ ...+|-+-+||-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 46788888999999999999988643 35689999998543211 2457777777653
No 290
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=66.35 E-value=12 Score=36.35 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=50.3
Q ss_pred CCCcceEEEEEEeeecCCCC----C-CCCcEEEEEECCeEEEeeeecCCCCCc--ccceEEEEecCCCCCCeEEEEEEEc
Q 009797 414 PAGGGLLVVIVHEAQDVEGK----H-HTNPYARILFRGEERKTKHVKKNRDPR--WEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 414 ~~~~g~L~V~v~~a~~L~~~----~-~~dPyv~v~l~~~~~kT~v~~~t~nP~--wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
...+|+|.+.+..+|+|.-. | .-+-||.+....+ +++++.-.+.+|. |.|.|+..+.+. +.+++-|+.+
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drq-h~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQ-HPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeeccc-CccccccccCCCCccchhhceeecccc---eeeeEEEeec
Confidence 34789999999999999642 2 4577888877443 3444444555555 889999988753 5788888877
Q ss_pred cc
Q 009797 487 SS 488 (525)
Q Consensus 487 ~~ 488 (525)
+-
T Consensus 123 ~p 124 (442)
T KOG1452|consen 123 PP 124 (442)
T ss_pred Cc
Confidence 53
No 291
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=65.46 E-value=2.2 Score=46.48 Aligned_cols=91 Identities=18% Similarity=0.312 Sum_probs=71.3
Q ss_pred CchHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHhc-CCceeeeeEEEeEEeCCCCCCeEeeeEEEecC-CCeEEEEe
Q 009797 69 DRVDWLNKFLELMWPYLDKA--ICKTAKNIAKPIIAEQ-IPKYKIESVEFETLTLGTLPPTFQGMKVYVTD-EKELIMEP 144 (525)
Q Consensus 69 E~~~WlN~~l~~~W~~~~~~--~~~~i~~~~~~~l~~~-~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~~-~~~~~le~ 144 (525)
|.+-|+|.++.++.--+.+. ..+.+.+.++.++... .|.+ ++.+-..+..-|..||.|++.++.... .+...++.
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~-~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSY-IEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchh-hhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 56789999999988644432 5666777777777764 5887 999999999999999999999998864 44557888
Q ss_pred eeeEeCCCcEEEEEEE
Q 009797 145 CLKWAANPNVTIGVKA 160 (525)
Q Consensus 145 ~~~~~~~~~i~l~~~~ 160 (525)
|+.|.||-.+.+..++
T Consensus 413 di~y~~d~~~~i~~~v 428 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRV 428 (795)
T ss_pred ceeecccccccccccc
Confidence 9999998876665543
No 292
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=64.41 E-value=6.6 Score=43.53 Aligned_cols=74 Identities=27% Similarity=0.325 Sum_probs=56.8
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY 331 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~ 331 (525)
......|.+.+.+++|..+.. ....||...+..- ...+.+|+++.+|..|.||++++..+.. .+.+++..+
T Consensus 753 eSpl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ 825 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKT 825 (1112)
T ss_pred cCcccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhh
Confidence 455678999999999999863 3577888776532 2334689999999999999999988753 566777777
Q ss_pred ecC
Q 009797 332 DWE 334 (525)
Q Consensus 332 d~~ 334 (525)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 655
No 293
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=63.59 E-value=4.2 Score=44.96 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=68.2
Q ss_pred CCCcceEEEEEEeeecCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009797 414 PAGGGLLVVIVHEAQDVEGKHHTNPYARILFR-----GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 414 ~~~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 488 (525)
+...|.+.+.+++|..+.. ..+-||...+. ..+-+|+++.+|..|.||+.|+..+-.. ++..+.-.+++.
T Consensus 755 pl~ygflh~~vhsat~lkq--s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s---qS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 755 PLLYGFLHVIVHSATGLKQ--SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES---QSSRLEKTEKST 829 (1112)
T ss_pred cccccceeeeecccccccc--ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc---cccchhhhcccc
Confidence 4467889999999988764 35667776542 2345899999999999999998887653 445555555543
Q ss_pred Ccc------CCCCCccceEEEEEccccccchhhhcccCCCCCC
Q 009797 489 RIG------LLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFRQ 525 (525)
Q Consensus 489 ~~~------~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~~ 525 (525)
+.. -...+...|+..+-+.- ...+..|||.|
T Consensus 830 ~~~k~~~~~~~~~~~~~~~~~~~l~~------~~~~d~d~~t~ 866 (1112)
T KOG4269|consen 830 PVEKLIDSHSQNSQNEEKRSRMKLDP------QPHHDADWYTQ 866 (1112)
T ss_pred hHHHhhhccchhhcccccccccccCc------cccccccCccC
Confidence 110 02345566666665554 55678888876
No 294
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=62.62 E-value=35 Score=30.95 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=43.7
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccC--CCCCccceEEEEEccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGL--LHPKVLFQFYFIFYLV 508 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~--~~~d~~lG~v~I~l~~ 508 (525)
...|.+..++.+|.|+|++...++..... .-|.|+.++-.....- -..+..+|...++|..
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45789999999999999999999865332 3688888875432100 1123569999999986
No 295
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=62.07 E-value=4.7 Score=31.66 Aligned_cols=54 Identities=26% Similarity=0.417 Sum_probs=40.2
Q ss_pred cCHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 009797 47 RDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPI 100 (525)
Q Consensus 47 ~~~~~~~~~~~~~p~w~~~~~~E~~~WlN~~l~~~W~~~~~~~~~~i~~~~~~~ 100 (525)
.|.+-++--|++||+|+--.|.-.-.-.|.+...+|.+.+.+++-.-+.++.++
T Consensus 27 ~D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~i 80 (108)
T KOG4092|consen 27 KDKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGI 80 (108)
T ss_pred ccceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHH
Confidence 344444456789999999999888889999999999998888873333334444
No 296
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=60.27 E-value=28 Score=31.52 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=41.4
Q ss_pred EeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCcc-CCCCCccceEEEEEccc
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIG-LLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~i~V~d~~~~~~-~~~~d~~lG~v~I~l~~ 508 (525)
-|+++....+|.|+|+|...++... ...-|.+++++-..... --.....+|.+.++|.+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3455555599999999999997642 23478888888653210 01346789999999997
No 297
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=54.06 E-value=62 Score=29.52 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=43.6
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccC-----CCCCccceEEEEEccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGL-----LHPKVLFQFYFIFYLV 508 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~-----~~~d~~lG~v~I~l~~ 508 (525)
...|.|..++.+|.|.|++...++-.... .-|.|+.++.....+. -..+..+|.+.++|..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45789999999999999999998865222 3688888876421000 1124579999999987
No 298
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.40 E-value=4.4 Score=43.72 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=45.2
Q ss_pred CCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcc
Q 009797 280 ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKE 351 (525)
Q Consensus 280 ~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~ 351 (525)
..+||+.+.+.-... ..+.+...+..|.|+|+|...+.. ...+.+.|+.......+.....+++-.++
T Consensus 27 al~~y~~v~vk~~~~--~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~ 94 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQG--AENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEES 94 (694)
T ss_pred hhhhhheeccceeec--ccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHH
Confidence 458898888764332 244557789999999999999765 46788999887644444444444333333
No 299
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=48.41 E-value=13 Score=24.42 Aligned_cols=15 Identities=33% Similarity=0.840 Sum_probs=9.1
Q ss_pred HHHHhheeeeEEecc
Q 009797 20 GLVIGYFLFIYFQPT 34 (525)
Q Consensus 20 ~~~~~~~~~~~~~~~ 34 (525)
.++++++++.||+++
T Consensus 25 ~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 25 IIVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHHhheEEecc
Confidence 344566677777743
No 300
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=47.35 E-value=75 Score=31.60 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=64.8
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCc--ccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPR--WEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~~t~nP~--wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
..-.|.|.|++..++..+ ..-|+.+..+....+|..+..+..-. =+++....++. .+..|.+.|+-.. +
T Consensus 56 RkF~LLVeI~EI~~i~k~--khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk-----L 126 (508)
T PTZ00447 56 RTFYLLVKINEIFNINKY--KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK-----L 126 (508)
T ss_pred ceeeEEEEehhhhccccc--eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc-----c
Confidence 344577888887777753 56788888888777776555433322 33455555543 3568999999884 7
Q ss_pred CCCccceEEEEEccccccchhhhcccCCCC
Q 009797 494 HPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
.+...||.+.|++++.. -.-.=-|+.||
T Consensus 127 vkk~hIgdI~InIn~dI--Idk~FPKnkWy 154 (508)
T PTZ00447 127 TKKVHIGQIKIDINASV--ISKSFPKNEWF 154 (508)
T ss_pred cceeEEEEEEecccHHH--HhccCCccceE
Confidence 78999999999998742 22233466776
No 301
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=46.20 E-value=67 Score=36.09 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=64.3
Q ss_pred cceEEEEEEeeecCCCCCCCCcEEEEEE----CCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEc
Q 009797 417 GGLLVVIVHEAQDVEGKHHTNPYARILF----RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSV 486 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~~~~dPyv~v~l----~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~ 486 (525)
..-++++++++.+.......|-+|.|.. |++. +.|+.+....+|.||+..+|.+. +.|....|.+.|+..
T Consensus 342 ~~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred CCceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 3457888888876655444566666554 3332 35666667899999998888765 444556777777655
Q ss_pred cc------------CccCCCCCccceEEEEEccccccchhhhc
Q 009797 487 SS------------RIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 487 ~~------------~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
.. ..+.-+.+..+|.+++.|-+.++..+..+
T Consensus 422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~ 464 (1076)
T KOG0904|consen 422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGE 464 (1076)
T ss_pred echhccccccchhhhhccccccCceEEEeeeeeechhhhhcCc
Confidence 20 00112346689999999888766554443
No 302
>PRK11874 petL cytochrome b6-f complex subunit PetL; Reviewed
Probab=45.47 E-value=29 Score=21.29 Aligned_cols=24 Identities=38% Similarity=0.740 Sum_probs=13.1
Q ss_pred CcchhhhHHhhhhhHHHHHHHHHhh
Q 009797 1 MGVISTIFGFCGFGVGISSGLVIGY 25 (525)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~ 25 (525)
||+++++ ++++.+.|..+|+..|+
T Consensus 1 mgvv~y~-~~l~~~~g~A~gl~fgL 24 (30)
T PRK11874 1 MGIVFFL-GYLGVFTGIALGLYFGL 24 (30)
T ss_pred CchHHHH-HHHHHHHHHHHHHHHHH
Confidence 5555544 46666655555555443
No 303
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=44.19 E-value=3.8e+02 Score=27.69 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=35.2
Q ss_pred CeEEEEEEecCC-----C-CCCCccEEEEEECcccCCCCC-----eeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 324 QAVELAVYDWEQ-----V-GKHDKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 324 ~~L~i~v~d~~~-----~-~~d~~lG~~~i~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
..|+|.||.-.. + ....+||.+.++|+ +...+. +.-|..+-+.. .........+||+.+.-.|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~---~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNK---QGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEec-cccccCCeeEEEccceecCCCC---CCCCCCCcceEEEEEeccC
Confidence 569999998432 1 45679999999998 332222 22344431110 0111224567888776654
No 304
>PRK11677 hypothetical protein; Provisional
Probab=43.07 E-value=19 Score=30.92 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=14.1
Q ss_pred hhhHHhhhhhHHHHHHHHHhh
Q 009797 5 STIFGFCGFGVGISSGLVIGY 25 (525)
Q Consensus 5 ~~~~~~~g~~~~~~~~~~~~~ 25 (525)
.|++++.||.+|.++|.+++-
T Consensus 2 ~W~~a~i~livG~iiG~~~~R 22 (134)
T PRK11677 2 TWEYALIGLVVGIIIGAVAMR 22 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 488888777777766665543
No 305
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=40.34 E-value=21 Score=29.03 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=32.0
Q ss_pred hcCCCCCcccCCCCCchHHHHHHHHHHhhhHHHHHH
Q 009797 55 MLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAIC 90 (525)
Q Consensus 55 ~~~~~p~w~~~~~~E~~~WlN~~l~~~W~~~~~~~~ 90 (525)
-|++||+|+.-.|..-...++.+-..+|.+..+++.
T Consensus 35 KLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~ 70 (104)
T PF10206_consen 35 KLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYIN 70 (104)
T ss_pred ecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 467999999999999999999999999998887775
No 306
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.10 E-value=30 Score=29.12 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=14.2
Q ss_pred chhhhHHhhhhhHHHHHHHHH
Q 009797 3 VISTIFGFCGFGVGISSGLVI 23 (525)
Q Consensus 3 ~~~~~~~~~g~~~~~~~~~~~ 23 (525)
+.+|+...+|+.+|+++|.++
T Consensus 5 ~~~W~~a~igLvvGi~IG~li 25 (138)
T COG3105 5 FMTWEYALIGLVVGIIIGALI 25 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888777766666665544
No 307
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=36.85 E-value=5.5 Score=35.03 Aligned_cols=24 Identities=21% Similarity=0.670 Sum_probs=14.9
Q ss_pred cchhhhHHhhhhhHHHHHHHHHhheeeeEEe
Q 009797 2 GVISTIFGFCGFGVGISSGLVIGYFLFIYFQ 32 (525)
Q Consensus 2 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 32 (525)
|+++|++-++++|+ +.|++|+.++
T Consensus 80 g~~~~imPlYtiGI-------~~f~lY~l~K 103 (152)
T PF15361_consen 80 GLMGQIMPLYTIGI-------VLFILYTLFK 103 (152)
T ss_pred chhhhHhHHHHHHH-------HHHHHHHHHH
Confidence 46777887766662 2355566666
No 308
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.64 E-value=1.6e+02 Score=25.97 Aligned_cols=71 Identities=6% Similarity=0.083 Sum_probs=45.6
Q ss_pred CCCcEEEEEE--CCeE-----------EEeeeecCCCCCc-ccceEEEEecCC-CCC-CeEEEEEEEcccCccCCCCCcc
Q 009797 435 HTNPYARILF--RGEE-----------RKTKHVKKNRDPR-WEEEFQFMLEEP-PTN-DRLHVEVCSVSSRIGLLHPKVL 498 (525)
Q Consensus 435 ~~dPyv~v~l--~~~~-----------~kT~v~~~t~nP~-wne~f~f~v~~~-~~~-~~l~i~V~d~~~~~~~~~~d~~ 498 (525)
.+|-||+... ++.- +-|...++-.||. ||-.++...... +.. ..|.+.|+.++. +++|..
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~----~G~d~v 100 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDH----SGKDCV 100 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCc----CCccee
Confidence 4788888775 2211 1222233556665 777777666543 111 389999999986 889999
Q ss_pred ceEEEEEcccc
Q 009797 499 FQFYFIFYLVH 509 (525)
Q Consensus 499 lG~v~I~l~~~ 509 (525)
.|+.-|.+--.
T Consensus 101 ~GYg~~hiP~~ 111 (187)
T KOG4027|consen 101 TGYGMLHIPTE 111 (187)
T ss_pred eeeeeEecCcC
Confidence 99977766543
No 309
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=36.13 E-value=6.7 Score=41.79 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=40.9
Q ss_pred ceeEEEEEEEeccCCcccC--c--CCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC
Q 009797 258 PVGILHVKVVKAMNLKKKD--L--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 320 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d--~--~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~ 320 (525)
-.|....+++.|.+++... . .-+.++++..+++.+. .+|+....+.+|.|||. .+++.+
T Consensus 278 ~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~---frt~~~~~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 278 FTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQT---FRTEISDDTEKPIYNED-EREDSD 340 (975)
T ss_pred hhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhh---hhhhhhccccccccccc-cccccc
Confidence 3555566667777664321 1 1245889999998766 48999999999999987 555544
No 310
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.52 E-value=2.6e+02 Score=24.69 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=32.2
Q ss_pred CCCCC-eEeeEEEEEeeCCC---CCeEEEEEEecCCCCCCCccEEEEEECcc
Q 009797 304 KNLNP-EWNEEYNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKE 351 (525)
Q Consensus 304 ~t~nP-~w~e~f~f~v~~~~---~~~L~i~v~d~~~~~~d~~lG~~~i~L~~ 351 (525)
+-.|| +||--++....... =..|.+.||..|..|+|...|-..+++-.
T Consensus 59 ~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP~ 110 (187)
T KOG4027|consen 59 GADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIPT 110 (187)
T ss_pred cCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecCc
Confidence 44455 57744444443221 24689999999999999999988776543
No 311
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=33.10 E-value=29 Score=38.95 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=56.8
Q ss_pred CCCCcEEEEEECCeEE-EeeeecCC-CCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 434 HHTNPYARILFRGEER-KTKHVKKN-RDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 434 ~~~dPyv~v~l~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
..+++|+.+.+..... +|....+. .+|.|.+.|+..+... ...+++.|.+.+- .+....+|.+.++...+..
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~--~g~v~~~~~~~~~----~G~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK--AGYVIFRVKGARV----PGWSKRWGRVKISFLQYCS 209 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhcccccccc--ccEEEEeecCCcc----ccceeEEEEeccchhhhhc
Confidence 3479999999977654 78777776 8999999998888764 4588888887764 4567888999988888755
Q ss_pred c
Q 009797 512 K 512 (525)
Q Consensus 512 ~ 512 (525)
+
T Consensus 210 ~ 210 (887)
T KOG1329|consen 210 G 210 (887)
T ss_pred c
Confidence 4
No 312
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=32.17 E-value=1.9e+02 Score=32.83 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=45.1
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEc----CCcCCc-eeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEE
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKIT----EDKLPS-KKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVY 331 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~----~~~~~~-~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~ 331 (525)
.-++|+++++.++.. ....|-+|.|..+ +...-. ..|+-+..+.+|.||+..+|.+. + |....|.+.||
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 457888888876542 2344666666553 333211 34555556889999998888775 3 23567888888
Q ss_pred ec
Q 009797 332 DW 333 (525)
Q Consensus 332 d~ 333 (525)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 64
No 313
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=31.15 E-value=32 Score=30.05 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=4.2
Q ss_pred heeeeEEecc
Q 009797 25 YFLFIYFQPT 34 (525)
Q Consensus 25 ~~~~~~~~~~ 34 (525)
.++|.|+.++
T Consensus 68 ~lvf~~c~r~ 77 (154)
T PF04478_consen 68 ALVFIFCIRR 77 (154)
T ss_pred HhheeEEEec
Confidence 3344444433
No 314
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=31.09 E-value=3.8e+02 Score=23.82 Aligned_cols=81 Identities=15% Similarity=0.320 Sum_probs=52.1
Q ss_pred EEEEEeccCCcccCcCCCCCcEEEEEEcC-------CcCC-ceeeeecCC-----CCCCeEeeEEEEEeeC--CC-CCeE
Q 009797 263 HVKVVKAMNLKKKDLLGASDPYVKLKITE-------DKLP-SKKTTVKHK-----NLNPEWNEEYNFTVRD--PE-SQAV 326 (525)
Q Consensus 263 ~V~v~~A~~L~~~d~~g~~dpyv~v~~~~-------~~~~-~~kT~v~~~-----t~nP~w~e~f~f~v~~--~~-~~~L 326 (525)
.=.|.+|.+.. ..+-||+..+.- .... ...|.+... +..-.||.-|++.... +. -..|
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 34567777653 346788877731 1112 345555432 3345799777666553 22 2589
Q ss_pred EEEEEecCCCCCCCccEEEEEEC
Q 009797 327 ELAVYDWEQVGKHDKMGMNVVPL 349 (525)
Q Consensus 327 ~i~v~d~~~~~~d~~lG~~~i~L 349 (525)
.++||..|..+++...|-..+.|
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEe
Confidence 99999999999999988776665
No 315
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=30.41 E-value=78 Score=26.03 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=34.5
Q ss_pred EEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCC------CCCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 439 YARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPP------TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 439 yv~v~l~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~------~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
||.+.+-. +.+.|+++. ..+|.+|-+-.|.|.... ....+.|++...-. ...+.+|.+.|++..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-----~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-----SDFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-----S-EEEEEEEEE--SHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-----CCeEEEEEEEeechhhh
Confidence 45555444 455666665 789999999999887531 13489999988742 23689999999999875
No 316
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=29.81 E-value=35 Score=26.36 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=11.7
Q ss_pred hhHHhhhhhHHHHHHHHHhheeeeEEe
Q 009797 6 TIFGFCGFGVGISSGLVIGYFLFIYFQ 32 (525)
Q Consensus 6 ~~~~~~g~~~~~~~~~~~~~~~~~~~~ 32 (525)
.++|+.++++.+.+.+++..++|..|+
T Consensus 5 ~i~~iialiv~~iiaIvvW~iv~ieYr 31 (81)
T PF00558_consen 5 EILAIIALIVALIIAIVVWTIVYIEYR 31 (81)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666655555666666
No 317
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=29.25 E-value=5.7e+02 Score=26.67 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=46.6
Q ss_pred CCCCCCeEeeeEEEecCCCeEEEEeeeeEeCCCcEEEEEEEcceEEEEEEEeEEEEEEEEEEEeecCCCCCeeeEEEEEc
Q 009797 120 LGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSL 199 (525)
Q Consensus 120 lG~~~P~i~~v~~~~~~~~~~~le~~~~~~~~~~i~l~~~~~~~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf 199 (525)
.|..--+|.++++|. +++.+++.+++.-. +.|++.+.=+|..+.. +=+++|
T Consensus 280 ~~~~~v~v~~v~v~g-~~~rl~i~~~~~g~------------------------~~G~i~l~G~P~yD~~----~~~l~l 330 (427)
T PF14356_consen 280 SGGKKVTVKSVSVYG-SGDRLVIALDVTGS------------------------LNGTIYLSGRPVYDPA----TQTLRL 330 (427)
T ss_pred CCCceEEEEEEEEEe-cCCcEEEEEEEEEE------------------------EEEEEEEEEEEEECCC----CCEEEE
Confidence 677777888888887 55555554444322 4444444444433321 112222
Q ss_pred CCCCeEEEEEEEcCcCcccCcchHHHHHHHHHHHHhhcccCC
Q 009797 200 MEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWP 241 (525)
Q Consensus 200 ~~~P~id~~~~~~g~~~~~iP~l~~~i~~~i~~~l~~~~v~P 241 (525)
-++||++..-+. -+-...-+.+..|.+.+++.++.|
T Consensus 331 ---~dld~~~~t~~~---l~~~a~wl~~~~i~~~i~~~~~~~ 366 (427)
T PF14356_consen 331 ---EDLDFDLDTKNF---LLKTAAWLLHGRIRKAIEEKLVFD 366 (427)
T ss_pred ---EeeEEEecccch---HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 467777765431 122334456677777777766555
No 318
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.35 E-value=50 Score=36.04 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=38.9
Q ss_pred CCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009797 435 HTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 487 (525)
Q Consensus 435 ~~dPyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~ 487 (525)
..+||+.+.+.-+.. .+.+.+.+.+|.|+++|...+... ..+.|.|+...
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~---~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG---GAKNIIVLLKS 77 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC---CceEEEEEecC
Confidence 478999988865443 666688999999999999997653 46788888773
No 319
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=27.18 E-value=15 Score=39.35 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=53.7
Q ss_pred CCcceEEEEEEeeecCCCC-------CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009797 415 AGGGLLVVIVHEAQDVEGK-------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 487 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~-------~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~ 487 (525)
.-.|+..++++.|.+++.- -..+|++...++.+..+|+...++.+|+|||. +|...+-+.+..|...|.+++
T Consensus 277 d~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~ 355 (975)
T KOG2419|consen 277 DFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYC 355 (975)
T ss_pred hhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccc
Confidence 3566777777888777531 14789999999999999999999999999997 776665544455666666554
No 320
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=25.99 E-value=6.1e+02 Score=25.51 Aligned_cols=111 Identities=13% Similarity=0.211 Sum_probs=69.5
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCC--eEeeEEEEEeeCCCCCeEEEEEEecCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNP--EWNEEYNFTVRDPESQAVELAVYDWEQV 336 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP--~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (525)
.=.|-|.|.+-.++.. ....|+.++.+.... +|..+.-+..- .-++.....+.. ...+|++.+|-.. +
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~---TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKk-L 126 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFSTDKYDF---TTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTK-L 126 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEcCceEE---EccccccCcCceEEEeeeeeeeeee-cCceEEEEEEecc-c
Confidence 4567778777766643 346799998886553 44333222221 233555555543 4678999999876 4
Q ss_pred CCCCccEEEEEECcc-cCCC-CCeeEEEecccccccCCCCCCceeeEEEEEEE
Q 009797 337 GKHDKMGMNVVPLKE-LTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~-l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (525)
.+..-||.+.+.+.. +... -++..|+.+.+ .+...++|.+++.
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~k--------DGq~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFK--------DGQEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEec--------CCceeeeEEEEeh
Confidence 567789999999864 3333 25666766532 3667788877764
No 321
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=25.63 E-value=3.7e+02 Score=22.59 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=43.8
Q ss_pred CCCCCcEEEEEECCeEE-EeeeecCCCCCcc-cceEEEEecCC-CCCCeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 433 KHHTNPYARILFRGEER-KTKHVKKNRDPRW-EEEFQFMLEEP-PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 433 ~~~~dPyv~v~l~~~~~-kT~v~~~t~nP~w-ne~f~f~v~~~-~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
.+...||++++-++... .|+..... .... ...+.+.+... +....+.|+++..+.. ...++.+.++.+...=+
T Consensus 22 ~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~---~~~~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 22 GGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSS---SMSKEKMFRFWFNTGFI 97 (134)
T ss_dssp SSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETT---ECCCEEEEEEEEEGGGS
T ss_pred CCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCc---ccccCeEEEEEEeeeee
Confidence 35679999999888766 33332221 1111 22344444321 2456899999998632 34577788888776554
Q ss_pred c
Q 009797 510 R 510 (525)
Q Consensus 510 ~ 510 (525)
.
T Consensus 98 ~ 98 (134)
T PF10409_consen 98 E 98 (134)
T ss_dssp B
T ss_pred e
Confidence 3
No 322
>COG3771 Predicted membrane protein [Function unknown]
Probab=21.90 E-value=65 Score=25.08 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=11.5
Q ss_pred hhhHHhhhhhHHHHHHHHH
Q 009797 5 STIFGFCGFGVGISSGLVI 23 (525)
Q Consensus 5 ~~~~~~~g~~~~~~~~~~~ 23 (525)
|.++|.+ |+.|+.+|+++
T Consensus 42 STLla~l-F~~G~~lgwli 59 (97)
T COG3771 42 STLLATL-FAAGFALGWLI 59 (97)
T ss_pred HHHHHHH-HHHHHHHHHHH
Confidence 4566665 66677777664
No 323
>PHA00024 IX minor coat protein
Probab=21.03 E-value=1e+02 Score=19.33 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=5.7
Q ss_pred chhhhHHhhhhh
Q 009797 3 VISTIFGFCGFG 14 (525)
Q Consensus 3 ~~~~~~~~~g~~ 14 (525)
++++++|.+.+|
T Consensus 4 ~l~~ffgA~ilG 15 (33)
T PHA00024 4 YLGYFFGAYILG 15 (33)
T ss_pred HHHHHHHHHHHH
Confidence 344555554444
No 324
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=20.36 E-value=25 Score=37.61 Aligned_cols=41 Identities=20% Similarity=0.499 Sum_probs=30.8
Q ss_pred cccccCHHHHHHhcCCCCCc-ccCCCCCchHHHHHHHHHHhh
Q 009797 43 PLVERDSETLQQMLPEIPLW-VKCPDYDRVDWLNKFLELMWP 83 (525)
Q Consensus 43 ~~~~~~~~~~~~~~~~~p~w-~~~~~~E~~~WlN~~l~~~W~ 83 (525)
-+...-.+.++.++.++|-- +.+++.-.+||.|-++.....
T Consensus 68 ~ls~~~~~~~~~al~nmPiGii~~~e~~~veW~Npf~~~if~ 109 (655)
T COG3887 68 YLSYQAEKSLEEALTNMPIGIILFNETNKVEWVNPFASKIFN 109 (655)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEcCCCceEEecHHHHHhcC
Confidence 34334445677788888854 467788899999999999887
Done!