BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009799
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 5/223 (2%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN YK ++F++AIEHY+ A EL +DI+YL NRAA E G+YE I + AVE+GRE
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXX 376
+R+D+K+I+++ R G A K+ D + IE +QK+LTEHR D
Sbjct: 71 MRADYKVISKSFARIGNAYHKLG----DLKKTIEYYQKSLTEHRTADILTKLRNAEKELK 126
Query: 377 XXXXXXIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL 436
+P+ A+E R +G E+F + +P A++ YTE ++R P+D R YSNRAA KL
Sbjct: 127 KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL 186
Query: 437 GAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALET 479
+ PE + D +K IE DP F + Y RK Q +KEY ALET
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 56/91 (61%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A+EA+ +G F+ D+ AV+ +TE I +P++ YSNR+AA A L ++ +A+AD K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNS 92
+E P++ + Y R A + +++Y A+ +
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALET 229
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDAD 447
+AD+E+ +GN+F+K +++ EAI+HY ++ + KD +NRAA + G + +
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLN 62
Query: 448 KCIELD-------PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRC 500
+E SK + R G L + K +E YQ+ L + + ++L +R
Sbjct: 63 DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNA 121
Query: 501 VQQINKA-GRGELSPEELKERQV 522
+++ KA ++PE+ +E ++
Sbjct: 122 EKELKKAEAEAYVNPEKAEEARL 144
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAK 60
MAD+ KA+GN + + ++ A+ H+ +A L D L +NR+AA Y A++
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYL-NNRAAAEYEKGEYETAISTLN 62
Query: 61 KTV----ELKPDW---SKGYSRLGAAHLGLQDYIEAVNSYKKGL 97
V E++ D+ SK ++R+G A+ L D + + Y+K L
Sbjct: 63 DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 83/118 (70%)
Query: 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGL 443
+P +A + KGNE F++ YP+A++HYTE+++RNPKD + YSNRAACYTKL L
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 444 KDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501
KD ++CI+L+PTF KGYTRK A +K+Y KA++ YQ+ L D +E DG +RC+
Sbjct: 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 65/100 (65%)
Query: 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAK 60
+A K KGN F GDY A++H+TEAI +P + LYSNR+A + L + AL D +
Sbjct: 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 61 KTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDID 100
+ ++L+P + KGY+R AA ++DY +A++ Y+K LD+D
Sbjct: 75 ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 11/100 (11%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN ++K ++ +A++HY+ A++ + +D +NRAA Y ++ +++ +KDC++ + +
Sbjct: 23 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI----Q 78
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKAL 356
L F + TRK AL M KDY A++ +QKAL
Sbjct: 79 LEPTF---IKGYTRKAAALEAM----KDYTKAMDVYQKAL 111
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 79/119 (66%)
Query: 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGL 443
+P++A EE+ KGNE+FK+ YP A++HY E+++R+P++ YSNRAAC TKL L
Sbjct: 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRAL 67
Query: 444 KDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502
D D CI LD F KGY RK A ++E+ KA Y++ L+ DP N+E +GVR C++
Sbjct: 68 DDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%)
Query: 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAK 60
+A E K KGN F GDY A+RH+ EA+ P+N +LYSNR+A L + AL D
Sbjct: 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71
Query: 61 KTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104
+ L + KGY R A + ++++ +A +Y+ L +DP+NE
Sbjct: 72 TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN +KK ++ A+ HY+ A++ D E+ +NRAA ++ +++ + DCD +
Sbjct: 20 GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI----- 74
Query: 317 LRSDFKMIARALTRKGTALVKM---AKCSKDYEPAIET 351
R D K I + RK LV M +K + YE A++
Sbjct: 75 -RLDSKFI-KGYIRKAACLVAMREWSKAQRAYEDALQV 110
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 76/107 (71%), Gaps = 4/107 (3%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GNAAYK+K+FEKA HY A+ELD +I++ N+AAVY E K+ EC++ C+KAVE GRE
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD 363
R+D+K+IA+A++R G A K D A++ F ++L+E R+P+
Sbjct: 75 TRADYKLIAKAMSRAGNAFQK----QNDLSLAVQWFHRSLSEFRDPE 117
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 1 MADEAKAK---GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALA 57
M D A A+ GNAA+ D+E A H+ +AI L P N Y+N++A + +A+ +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 58 DAKKTVEL----KPDW---SKGYSRLGAAHLGLQDYIEAVNSYKKGL 97
+K VE+ + D+ +K SR G A D AV + + L
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444
D IA E++ GN +KQ+ + +A HY +++ +P + Y+N+AA Y + E ++
Sbjct: 6 DAAIA--EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 445 DADKCIEL 452
+K +E+
Sbjct: 64 FCEKAVEV 71
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 4/108 (3%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN AYKKK+F+ A++HY A ELD +++Y+TN+AAVY E G Y +C + C+KA+E GRE
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT 364
R D++ IA+A R G + K K Y+ AI + K+L EHR PD
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEK----YKDAIHFYNKSLAEHRTPDV 114
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--- 65
GN A+ D++ A++H+ +A L P N +N++A + +Y +K +E+
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 66 -KPDW---SKGYSRLGAAHLGLQDYIEAVNSYKKGL 97
+ D+ +K Y+R+G ++ + Y +A++ Y K L
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDA 446
K A +E+E GN+ +K++ + A++HY ++ +P + +N+AA Y + G + +
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 447 DKCIELD-------PTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484
+K IE+ +K Y R G F ++Y A+ Y + L
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 4/108 (3%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN AYKKK+F+ A++HY A ELD +++Y+TN+AAVY E G Y +C + C+KA+E GRE
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT 364
R D++ IA+A R G + K K Y+ AI + K+L EHR PD
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEK----YKDAIHFYNKSLAEHRTPDV 114
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--- 65
GN A+ D++ A++H+ +A L P N +N++A + +Y +K +E+
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 66 -KPDW---SKGYSRLGAAHLGLQDYIEAVNSYKKGL 97
+ D+ +K Y+R+G ++ + Y +A++ Y K L
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDA 446
K A +E+E GN+ +K++ + A++HY ++ +P + +N+AA Y + G + +
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 447 DKCIELD-------PTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484
+K IE+ +K Y R G F ++Y A+ Y + L
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 70/106 (66%), Gaps = 4/106 (3%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN AYKKK+F+ A++HY A ELD +++Y+ N+AAVY E G Y +C + C+KA+E GRE
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP 362
R D++MIA A R G + K K Y+ AI + K+L EHR P
Sbjct: 71 NREDYRMIAYAYARIGNSYFKEEK----YKDAIHFYNKSLAEHRTP 112
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--- 65
GN A+ D++ A++H+ +A L P N N++A + +Y +K +E+
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 66 -KPDW---SKGYSRLGAAHLGLQDYIEAVNSYKKGL 97
+ D+ + Y+R+G ++ + Y +A++ Y K L
Sbjct: 71 NREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSL 106
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKD 445
K A +E+E GN+ +K++ + A++HY ++ +P + N+AA Y + G + +
Sbjct: 1 SKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCREL 60
Query: 446 ADKCIELD-------PTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484
+K IE+ + Y R G F ++Y A+ Y + L
Sbjct: 61 CEKAIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 67/102 (65%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
+E K KGN A S G+ + A++ ++EAI L P NHVLYSNRSAA+A +Y A D K
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
TV+LKPDW KGYSR AA L + EA +Y++GL + NN
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 68/110 (61%)
Query: 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448
+E +EKGN+ +A+Q Y+E+++ +P + YSNR+A Y K G + +D K
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVR 498
++L P + KGY+RK A FL +++A TY+EGLKH+ N +L +G++
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN A + A++ YS A++LD + +NR+A Y + G Y++ +D K V +
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV----D 66
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT-EHRNP 362
L+ D+ + +RK AL + + +E A T+++ L E NP
Sbjct: 67 LKPDW---GKGYSRKAAALEFLNR----FEEAKRTYEEGLKHEANNP 106
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 60/101 (59%)
Query: 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448
A+E R +G E+F + +P A++ YTE ++R P+D R YSNRAA KL + PE + D +K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489
IE DP F + Y RK Q +KEY ALET D +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 56/91 (61%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A+EA+ +G F+ D+ AV+ +TE I +P++ YSNR+AA A L ++ +A+AD K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNS 92
+E P++ + Y R A + +++Y A+ +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALET 94
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
G + K ++ A++ Y+ ++ ED +NRAA ++ + E I DC+KA+E+
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358
RA RK TA + + K+Y A+ET A T+
Sbjct: 71 F-------VRAYIRKATAQIAV----KEYASALETLDAARTK 101
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 66/103 (64%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A+ K +GN ++EAAV + +AI L+P N V + NR+AA++ L NYA A+ D ++
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104
+ + P +SK Y R+G A L ++EAV YKK L++DP+NE
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444
D A+ + +GNE K + + A+ Y +++ NP + + NRAA Y+KLG ++
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 445 DADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491
D ++ I +DP +SK Y R G L ++ +A+ Y++ L+ DP N+
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN K + FE A+ Y A+EL+ + Y NRAA Y ++G Y ++DC++A+
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI----- 73
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKAL 356
++A R G AL + K + A+ ++KAL
Sbjct: 74 --CIDPAYSKAYGRMGLALSSLNK----HVEAVAYYKKAL 107
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 60/103 (58%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A+E K + N F + DYE A++ +++AI L+P N + Y NRS A+ Y AL DA +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104
+EL + KGY R A+++ L + A+ Y+ + + P+++
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 58/106 (54%)
Query: 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDA 446
K A+E + + N++FK + Y AI+ Y++++ NP + Y NR+ Y + L DA
Sbjct: 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 447 DKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492
+ IELD + KGY R+ A L ++ AL Y+ +K P +++
Sbjct: 64 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 109
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
N +K K++E AI+ YS A+EL+ + Y NR+ YL Y + D +A+E ++
Sbjct: 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 72
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIET 351
+ A + AL K +DYE ++
Sbjct: 73 YIKGYYRRAAS----NMALGKFRAALRDYETVVKV 103
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 60/103 (58%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A+E K + N F + DYE A++ +++AI L+P N + Y NRS A+ Y AL DA +
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104
+EL + KGY R A+++ L + A+ Y+ + + P+++
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDA 446
K A+E + + N++FK + Y AI+ Y++++ NP + Y NR+ Y + L DA
Sbjct: 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 447 DKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRC 500
+ IELD + KGY R+ A L ++ AL Y+ +K P +++ + C
Sbjct: 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
N +K K++E AI+ YS A+EL+ + Y NR+ YL Y + D +A+E
Sbjct: 20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---- 75
Query: 317 LRSDFKMIARALTRKGT--ALVKMAKCSKDYEPAIET 351
D K I R + AL K +DYE ++
Sbjct: 76 --LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 60/103 (58%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A+E K + N F + DYE A++ +++AI L+P N + Y NRS A+ Y AL DA +
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATR 80
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104
+EL + KGY R A+++ L + A+ Y+ + + P+++
Sbjct: 81 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 123
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDA 446
K A+E + + N++FK + Y AI+ Y++++ NP + Y NR+ Y + L DA
Sbjct: 19 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDA 78
Query: 447 DKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRC 500
+ IELD + KGY R+ A L ++ AL Y+ +K P +++ + C
Sbjct: 79 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 132
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
N +K K++E AI+ YS A+EL+ + Y NR+ YL Y + D +A+E ++
Sbjct: 28 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKK 87
Query: 317 -LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIET 351
++ ++ A + AL K +DYE ++
Sbjct: 88 YIKGYYRRAASNM-----ALGKFRAALRDYETVVKV 118
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 30/166 (18%)
Query: 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIF 384
A A G A K DY+ AIE +QKAL
Sbjct: 1 AEAWYNLGNAYYKQG----DYDEAIEYYQKALE--------------------------L 30
Query: 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444
DP+ A+ GN ++KQ Y EAI++Y ++L +P+ + N Y K G E ++
Sbjct: 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Query: 445 DADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490
K +ELDP ++ + G + +YD+A+E YQ+ L+ DP++
Sbjct: 91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 37/165 (22%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GNA YK+ ++++AIE+Y ALELD N Y + G Y+E I+ KA+E +
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LD 65
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXX 376
RS A A G A K DY+ AIE +QKAL
Sbjct: 66 PRS-----AEAWYNLGNAYYKQG----DYDEAIEYYQKALE------------------- 97
Query: 377 XXXXXXIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421
DP+ A+ GN ++KQ Y EAI++Y ++L +P+
Sbjct: 98 -------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455
GN ++KQ Y EAI++Y ++L +P+ + N Y K G E ++ K +ELDP
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 456 FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492
++ + G + +YD+A+E YQ+ L+ DP++ E
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
GNA + GDY+ A+ ++ +A+ L P + + N A+ +Y +A+ +K +EL P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 69 WSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDP 101
++ + LG A+ DY EA+ Y+K L++DP
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
GNA + GDY+ A+ ++ +A+ L P + + N A+ +Y +A+ +K +EL P
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 69 WSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDP 101
++ + LG A+ DY EA+ Y+K L++DP
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 425 TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484
+ N Y K G E ++ K +ELDP ++ + G + +YD+A+E YQ+ L
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 485 KHDPQNQE 492
+ DP++ E
Sbjct: 63 ELDPRSAE 70
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 64/102 (62%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
+D+ K++GNAA + +Y A+ +T+A+S++P N + SNR+AA+++ + A DA+
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
+ P +SK +SRLG A + DY A +Y+KG++ + N
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448
+D+ + +GN +++Y +AI YT++L P +P SNRAA Y+ G + +DA+
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ--NQELLDGVRRCVQQINK 506
+DP +SK ++R G +F + +Y A E Y++G++ + + + G+ ++I +
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE 130
Query: 507 AGRGELSP 514
A RG P
Sbjct: 131 ANRGAEPP 138
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GNAA +KE+ KAI+ Y+ AL + + YL+NRAA Y G++E+ +D + A
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT----- 72
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361
D K ++A +R G A MA DY+ A E ++K + N
Sbjct: 73 -VVDPK-YSKAWSRLGLARFDMA----DYKGAKEAYEKGIEAEGN 111
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 59/102 (57%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A+ K GNA + GDY+ A+ ++ +A+ L P+N + N A+ +Y A+ +K
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
+EL P+ +K + R G A+ DY +A+ Y+K L++DPNN
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%)
Query: 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448
A+ + GN ++KQ Y +AI++Y ++L +P + + N Y K G + ++ K
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490
+ELDP +K + R+G + +Y KA+E YQ+ L+ DP N
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GNA YK+ +++KAIE+Y ALELD + S N Y + G Y++ I+ KA+E
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKAL 356
A+A R+G A K DY+ AIE +QKAL
Sbjct: 76 -------NAKAWYRRGNAYYKQG----DYQKAIEDYQKAL 104
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 30/134 (22%)
Query: 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIF 384
A A G A K DY+ AIE +QKAL
Sbjct: 9 AEAWKNLGNAYYKQG----DYQKAIEYYQKALE--------------------------L 38
Query: 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444
DP A GN ++KQ Y +AI++Y ++L +P + + + R Y K G + ++
Sbjct: 39 DPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIE 98
Query: 445 DADKCIELDPTFSK 458
D K +ELDP +K
Sbjct: 99 DYQKALELDPNNAK 112
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312
GNA YK+ +++KAIE+Y ALELD + R Y + G Y++ I+D KA+E
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
GNA + GDY+ A+ ++ +A+ L P+N + R A+ +Y A+ D +K +EL P+
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 69 WSKGYSRLGAA 79
+K LG A
Sbjct: 110 NAKAKQNLGNA 120
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELD 280
GNA YK+ +++KAIE Y ALELD
Sbjct: 84 GNAYYKQGDYQKAIEDYQKALELD 107
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
GNA + GDY+ A+ ++ +A+ L P+N + N A+ +Y +A+ +K +EL P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 69 WSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
++ + LG A+ DY EA+ Y+K L++DPNN
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455
GN ++KQ Y EAI++Y ++L +P + + N Y K G E ++ K +ELDP
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 456 FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492
++ + G + +YD+A+E YQ+ L+ DP N E
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GNA YK+ ++++AIE+Y ALELD + N Y + G Y+E I+ KA+E
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKAL 356
+ + A ++G DY+ AIE +QKAL
Sbjct: 76 NAEAWYNLGNAYYKQG-----------DYDEAIEYYQKAL 104
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 30/131 (22%)
Query: 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIF 384
A A G A K DY+ AIE +QKAL
Sbjct: 9 AEAWYNLGNAYYKQG----DYDEAIEYYQKALE--------------------------L 38
Query: 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444
DP A+ GN ++KQ Y EAI++Y ++L +P + + N Y K G E ++
Sbjct: 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98
Query: 445 DADKCIELDPT 455
K +ELDP
Sbjct: 99 YYQKALELDPN 109
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312
GNA YK+ ++++AIE+Y ALELD + N Y + G Y+E I+ KA+E
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 37/149 (24%)
Query: 289 NRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPA 348
N Y + G Y+E I+ KA+E + + A ++G DY+ A
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-----------DYDEA 62
Query: 349 IETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIFDPKIADEEREKGNEFFKQQKYPEA 408
IE +QKAL DP A+ GN ++KQ Y EA
Sbjct: 63 IEYYQKALE--------------------------LDPNNAEAWYNLGNAYYKQGDYDEA 96
Query: 409 IQHYTESLRRNPKDPRTYSNRAACYTKLG 437
I++Y ++L +P + N K G
Sbjct: 97 IEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
GNA + GDY+ A+ ++ +A+ L P+N + N A+ +Y +A+ +K +EL P+
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Query: 69 WSKGYSRLGAA 79
++ LG A
Sbjct: 110 NAEAKQNLGNA 120
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 424 RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483
+ N Y K G E ++ K +ELDP ++ + G + +YD+A+E YQ+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 484 LKHDPQNQE 492
L+ DP N E
Sbjct: 70 LELDPNNAE 78
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 30 SLSPDNHV-LYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIE 88
++ P N + N A+ +Y +A+ +K +EL P+ ++ + LG A+ DY E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 89 AVNSYKKGLDIDPNN 103
A+ Y+K L++DPNN
Sbjct: 62 AIEYYQKALELDPNN 76
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELD 280
GNA YK+ ++++AIE+Y ALELD
Sbjct: 84 GNAYYKQGDYDEAIEYYQKALELD 107
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 49/95 (51%)
Query: 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448
A E +E+GN F +KYPEA Y ++ RNP Y+NRA CY K+ + L D +
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483
+ELD K + G Q ++ YD+A+ Q
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A E K +GN F Y A + AI+ +P V Y+NR+ + + ALAD ++
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99
+EL K + LG L ++ Y EA+ + ++ +
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER-GR 315
GN + +++ +A Y A+ + Y TNRA YL+M + E+ + DC +A+E G+
Sbjct: 16 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75
Query: 316 ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357
+++ F + G ++M + Y+ AI Q+A +
Sbjct: 76 SVKAHFFL--------GQCQLEM----ESYDEAIANLQRAYS 105
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 262 KKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321
K ++ E+A+ ALELD + + LEM Y+E I + +A +E R +F
Sbjct: 55 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448
A E +E+GN F +KYPEA Y ++ RNP Y+NRA CY K+ + L D +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQ 481
+ELD K + G Q ++ YD+A+ Q
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 96
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A E K +GN F Y A + AI+ +P V Y+NR+ + + ALAD ++
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99
+EL K + LG L ++ Y EA+ + ++ +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER-GR 315
GN + +++ +A Y A+ + Y TNRA YL+M + E+ + DC +A+E G+
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 316 ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357
+++ F + G ++M + Y+ AI Q+A +
Sbjct: 71 SVKAHFFL--------GQCQLEM----ESYDEAIANLQRAYS 100
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 56/95 (58%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
GNA + GDY+ A+ ++ +A+ L P+N + N A+ +Y +A+ +K +EL P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 69 WSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
++ + LG A+ DY EA+ Y+K L++ PNN
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455
GN ++KQ Y EAI++Y ++L P + + N Y K G E ++ K +EL P
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 456 FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492
++ + G + +YD+A+E YQ+ L+ P N E
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GNA YK+ ++++AIE+Y ALEL + N Y + G Y+E I+ KA+E
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--- 72
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361
+ A A G A K DY+ AIE +QKAL + N
Sbjct: 73 ----YPNNAEAWYNLGNAYYKQG----DYDEAIEYYQKALELYPN 109
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 30/131 (22%)
Query: 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIF 384
A A G A K DY+ AIE +QKAL +
Sbjct: 9 AEAWYNLGNAYYKQG----DYDEAIEYYQKALELY------------------------- 39
Query: 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444
P A+ GN ++KQ Y EAI++Y ++L P + + N Y K G E ++
Sbjct: 40 -PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 98
Query: 445 DADKCIELDPT 455
K +EL P
Sbjct: 99 YYQKALELYPN 109
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
GNA + GDY+ A+ ++ +A+ L P+N + N A+ +Y +A+ +K +EL P+
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Query: 69 WSKGYSRLGAA 79
++ LG A
Sbjct: 110 NAEAKQNLGNA 120
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 55/151 (36%), Gaps = 37/151 (24%)
Query: 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYE 346
N Y + G Y+E I+ KA+E + A A G A K DY+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALEL-------YPNNAEAWYNLGNAYYKQG----DYD 60
Query: 347 PAIETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIFDPKIADEEREKGNEFFKQQKYP 406
AIE +QKAL + P A+ GN ++KQ Y
Sbjct: 61 EAIEYYQKALELY--------------------------PNNAEAWYNLGNAYYKQGDYD 94
Query: 407 EAIQHYTESLRRNPKDPRTYSNRAACYTKLG 437
EAI++Y ++L P + N K G
Sbjct: 95 EAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 30 SLSPDNHV-LYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIE 88
++ P N + N A+ +Y +A+ +K +EL P+ ++ + LG A+ DY E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61
Query: 89 AVNSYKKGLDIDPNN 103
A+ Y+K L++ PNN
Sbjct: 62 AIEYYQKALELYPNN 76
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 424 RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483
+ N Y K G E ++ K +EL P ++ + G + +YD+A+E YQ+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 484 LKHDPQNQE 492
L+ P N E
Sbjct: 70 LELYPNNAE 78
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452
++KGN+FF+ +KY +AI++Y +L +DP YSN +ACY +G + + ++ + K +EL
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 453 DPTFSKGYTRKGA 465
P +SK R+ +
Sbjct: 69 KPDYSKVLLRRAS 81
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL 65
K KGN F + Y+ A++++ A+ L D V YSN SA + S+ + + + K +EL
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 66 KPDWSKGYSRLGAAHLGLQDYIEAV 90
KPD+SK R +A+ GL + +A+
Sbjct: 69 KPDYSKVLLRRASANEGLGKFADAM 93
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN ++ K+++ AI++Y+ ALEL ED + +N +A Y+ +G ++ ++ KA+ E
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKAL----E 67
Query: 317 LRSDFKMIARALTRKGTA 334
L+ D+ ++ L R+ +A
Sbjct: 68 LKPDY---SKVLLRRASA 82
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 447 DKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490
DK ++LD S Y +G + F L+ YD+A + + + + DP+N
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 14 SSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALAD 58
S GD + V T+A+ L PD + R++A+ L +ADA+ D
Sbjct: 51 SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448
A + + +GN FF + + EAI++Y ++ +P +P YSN +ACY G + + ++ K
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 449 CIELDPTFSKGYTRKGA 465
+E+ P SK R+ +
Sbjct: 81 ALEIKPDHSKALLRRAS 97
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A + K +GN F++ ++ A++++ AI L P+ V YSN SA + S + + K
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAV 90
+E+KPD SK R +A+ L ++ +A+
Sbjct: 81 ALEIKPDHSKALLRRASANESLGNFTDAM 109
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN + K F +AI++Y A+ELD + + +N +A Y+ G E+ I+ KA+ E
Sbjct: 28 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL----E 83
Query: 317 LRSDFKMIARALTRKGTA 334
++ D ++AL R+ +A
Sbjct: 84 IKPDH---SKALLRRASA 98
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 13 FSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALAD 58
S+GD E + T+A+ + PD+ R++A+ SL N+ DA+ D
Sbjct: 66 ISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 111
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 414 ESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473
ES+ +P P +Y A E K K ++L+P + Y +G + F L++Y
Sbjct: 264 ESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 322
Query: 474 DKALETYQEGLKHDPQN 490
A E +Q+ +P+N
Sbjct: 323 KNAKEDFQKAQSLNPEN 339
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 60 KKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
+K V+L P++ Y G + LQDY A ++K ++P N
Sbjct: 296 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 339
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 31 LSPDNHVLYS----NRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDY 86
LSP Y+ NR + N+ +A+ + +EL P+ YS + A ++ D
Sbjct: 12 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 71
Query: 87 IEAVNSYKKGLDIDPNN 103
+ + K L+I P++
Sbjct: 72 EKVIEFTTKALEIKPDH 88
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448
A + + +GN FF + + EAI++Y ++ +P +P YSN +ACY G + + ++ K
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 449 CIELDPTFSKGYTRKGA 465
+E+ P SK R+ +
Sbjct: 85 ALEIKPDHSKALLRRAS 101
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
A + K +GN F++ ++ A++++ AI L P+ V YSN SA + S + + K
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAV 90
+E+KPD SK R +A+ L ++ +A+
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAM 113
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN + K F +AI++Y A+ELD + + +N +A Y+ G E+ I+ KA+ E
Sbjct: 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL----E 87
Query: 317 LRSDFKMIARALTRKGTA 334
++ D ++AL R+ +A
Sbjct: 88 IKPDH---SKALLRRASA 102
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 13 FSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALAD 58
S+GD E + T+A+ + PD+ R++A+ SL N+ DA+ D
Sbjct: 70 ISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 414 ESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473
ES+ +P P +Y A E K K ++L+P + Y +G + F L++Y
Sbjct: 268 ESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326
Query: 474 DKALETYQEGLKHDPQN 490
A E +Q+ +P+N
Sbjct: 327 KNAKEDFQKAQSLNPEN 343
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 60 KKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
+K V+L P++ Y G + LQDY A ++K ++P N
Sbjct: 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 31 LSPDNHVLYS----NRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDY 86
LSP Y+ NR + N+ +A+ + +EL P+ YS + A ++ D
Sbjct: 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 75
Query: 87 IEAVNSYKKGLDIDPNN 103
+ + K L+I P++
Sbjct: 76 EKVIEFTTKALEIKPDH 92
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 78/209 (37%), Gaps = 11/209 (5%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN ++ + ++AIEHY AL L + I N AA + G E ++ A++ +
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 317 L---RSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXX 373
L RSD + +AL R L + C Y AIET N
Sbjct: 134 LYCVRSDLGNLLKALGR----LEEAKAC---YLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 374 XXXXXXXXXI-FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAAC 432
+ DP D GN + + + A+ Y +L +P + N A
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246
Query: 433 YTKLGAMPEGLKDADKCIELDPTFSKGYT 461
Y + G + + + IEL P F Y
Sbjct: 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYC 275
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 37/208 (17%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316
GN + + F++A+ Y AL L N A VY E G + I +A+E
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXX 376
+ +A AL KG+ +A+ Y A+ N
Sbjct: 270 FPDAYCNLANALKEKGS----VAEAEDCYNTALRLCPTHADSLNN--------------- 310
Query: 377 XXXXXXIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL 436
+A+ +RE+GN EA++ Y ++L P+ +SN A+ +
Sbjct: 311 -----------LANIKREQGN-------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352
Query: 437 GAMPEGLKDADKCIELDPTFSKGYTRKG 464
G + E L + I + PTF+ Y+ G
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMG 380
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS 70
A ++GD E AV+ + A+ +PD + + S+ +L +A A K +E +P+++
Sbjct: 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 169
Query: 71 KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102
+S LG + A++ ++K + +DPN
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 38/214 (17%)
Query: 288 TNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEP 347
+N VY E G+ +E I+ A+ + + +A AL G D E
Sbjct: 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG-----------DMEG 119
Query: 348 AIETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIFDPKIADEEREKGNEFFKQQKYPE 407
A++ + AL ++P + + GN + E
Sbjct: 120 AVQAYVSALQ--------------------------YNPDLYCVRSDLGNLLKALGRLEE 153
Query: 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467
A Y +++ P +SN + G + + +K + LDP F Y G +
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213
Query: 468 FFLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501
+ +D+A+ Y L P N ++ G CV
Sbjct: 214 KEARIFDRAVAAYLRALSLSP-NHAVVHGNLACV 246
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 40/89 (44%)
Query: 400 FKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKG 459
F+ ++ + T ++++NP YSN Y + G + E ++ + L P F G
Sbjct: 44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Query: 460 YTRKGAIQFFLKEYDKALETYQEGLKHDP 488
Y A + + A++ Y L+++P
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYNP 132
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444
+P +A+ GN + ++ + EAI+HY +LR P Y N AA G M ++
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 445 DADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488
++ +P + G + L ++A Y + ++ P
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 24 HF-TEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82
HF T AI +P YSN + +A+ + + LKPD+ GY L AA +
Sbjct: 54 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA 113
Query: 83 LQDYIEAVNSYKKGLDIDPN 102
D AV +Y L +P+
Sbjct: 114 AGDMEGAVQAYVSALQYNPD 133
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
GN + ++ AV + A+SLSP++ V++ N + + A+ ++ +EL+P
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 69 WSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
+ Y L A EA + Y L + P +
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
AD N G+ E AVR + +A+ + P+ +SN ++ +AL K+
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 62 TVELKPDWSKGYSRLGAAHLGLQD 85
+ + P ++ YS +G +QD
Sbjct: 365 AIRISPTFADAYSNMGNTLKEMQD 388
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 14 SSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGY 73
+ G+ A+ HF +A++L P+ Y N + A+A + + L P+ + +
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Query: 74 SRLGAAHL--GLQDYIEAVNSYKKGLDIDPN 102
L + GL D A+++Y++ +++ P+
Sbjct: 241 GNLACVYYEQGLIDL--AIDTYRRAIELQPH 269
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%)
Query: 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAK 60
+A+ GN G + A+ H+ A+ L PD Y N +AA + + A+
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 61 KTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102
++ PD S LG L EA Y K ++ PN
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 43/105 (40%)
Query: 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGL 443
P D N ++ EA Y +LR P + +N A + G + E +
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 444 KDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488
+ K +E+ P F+ ++ ++ + +AL Y+E ++ P
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 52/85 (61%)
Query: 15 SGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYS 74
SG+Y+ AV FT A+S+ P++++L++ A A+ + +A+A ++ +EL+P + +
Sbjct: 181 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 240
Query: 75 RLGAAHLGLQDYIEAVNSYKKGLDI 99
LG + + L + EAV + + L++
Sbjct: 241 NLGISCINLGAHREAVEHFLEALNM 265
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 52/85 (61%)
Query: 15 SGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYS 74
SG+Y+ AV FT A+S+ P++++L++ A A+ + +A+A ++ +EL+P + +
Sbjct: 190 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 249
Query: 75 RLGAAHLGLQDYIEAVNSYKKGLDI 99
LG + + L + EAV + + L++
Sbjct: 250 NLGISCINLGAHREAVEHFLEALNM 274
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 52/85 (61%)
Query: 15 SGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYS 74
SG+Y+ AV FT A+S+ P++++L++ A A+ + +A+A ++ +EL+P + +
Sbjct: 190 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 249
Query: 75 RLGAAHLGLQDYIEAVNSYKKGLDI 99
LG + + L + EAV + + L++
Sbjct: 250 NLGISCINLGAHREAVEHFLEALNM 274
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 52/85 (61%)
Query: 15 SGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYS 74
SG+Y+ AV FT A+S+ P++++L++ A A+ + +A+A ++ +EL+P + +
Sbjct: 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 289
Query: 75 RLGAAHLGLQDYIEAVNSYKKGLDI 99
LG + + L + EAV + + L++
Sbjct: 290 NLGISCINLGAHREAVEHFLEALNM 314
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 52/85 (61%)
Query: 15 SGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYS 74
SG+Y+ AV FT A+S+ P++++L++ A A+ + +A+A ++ +EL+P + +
Sbjct: 167 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 226
Query: 75 RLGAAHLGLQDYIEAVNSYKKGLDI 99
LG + + L + EAV + + L++
Sbjct: 227 NLGISCINLGAHREAVEHFLEALNM 251
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 393 REKGNEFFKQQKYPEAIQHYT--------ESLRRNPKDPR-------TYSNRAACYTKLG 437
+E+G +FK+ KY +A+ Y ES N + + ++ N A C+ KL
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 438 AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497
A ++ +K +ELD KG +R+G + +++ A +Q+ L+ P N+ +
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270
Query: 498 RRCVQQINK 506
C Q+I +
Sbjct: 271 AVCQQRIRR 279
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 5 AKAKGNAAFSSGDYEAAVRHFTEAIS------------------LSPDNHVLYSNRSAAH 46
K +G F G Y+ A+ + + +S L +H+ N + H
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL---NLAMCH 206
Query: 47 ASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
L ++ A+ K +EL + KG SR G AHL + D+ A ++K L + PNN
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 264 KEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF-- 321
K FEKA E + E E + + R VY + GKY++ + K V E S F
Sbjct: 127 KSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS-WLEYESSFSN 185
Query: 322 KMIARALTRKGTALVKMAKCS---KDYEPAIETFQKAL 356
+ +A + + + +A C + + AIE+ KAL
Sbjct: 186 EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 393 REKGNEFFKQQKYPEAIQHYTESLRR-------NPKDPRT--------YSNRAACYTKLG 437
+EKG +FK KY +A+ Y + + + K+ + + N A CY KL
Sbjct: 272 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 438 AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491
+ ++ DK + LD KG R+G Q + E++ A +++ L+ +PQN+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 5 AKAKGNAAFSSGDYEAAVRHFTEAISL-------------SPDNHVL--YSNRSAAHASL 49
K KG F G Y AV + + +S + ++ +L + N + + L
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 50 HNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
Y A+ K + L KG R G A L + ++ A ++K L+++P N
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 393 REKGNEFFKQQKYPEAIQHYTESLRR-------NPKDPRT--------YSNRAACYTKLG 437
+EKG +FK KY +A+ Y + + + K+ + + N A CY KL
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 438 AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491
+ ++ DK + LD KG R+G Q + E++ A +++ L+ +PQN+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 5 AKAKGNAAFSSGDYEAAVRHFTEAISL-------------SPDNHVL--YSNRSAAHASL 49
K KG F G Y AV + + +S + ++ +L + N + + L
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 50 HNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
Y A+ K + L KG R G A L + ++ A ++K L+++P N
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 393 REKGNEFFKQQKYPEAIQHYT--------ESLRRNPKDPR-------TYSNRAACYTKLG 437
+E+G +FK+ KY +A+ Y ES N + + ++ N A C+ KL
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 438 AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497
A ++ +K +ELD KG R+G + +++ A +Q+ L+ P N+ +
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270
Query: 498 RRCVQQINK 506
C Q+I +
Sbjct: 271 AVCQQRIRR 279
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 5 AKAKGNAAFSSGDYEAAVRHFTEAIS------------------LSPDNHVLYSNRSAAH 46
K +G F G Y+ A+ + + +S L +H+ N + H
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL---NLAMCH 206
Query: 47 ASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
L ++ A+ K +EL + KG R G AHL + D+ A ++K L + PNN
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP 454
GN ++KQ Y EAI++Y ++L +P+ + N Y K G E ++ K +ELDP
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312
GNA YK+ ++++AIE+Y ALELD N Y + G Y+E I+ KA+E
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 30/97 (30%)
Query: 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIF 384
A A G A K DY+ AIE +QKAL
Sbjct: 3 AEAWYNLGNAYYKQG----DYDEAIEYYQKALE--------------------------L 32
Query: 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421
DP+ A+ GN ++KQ Y EAI++Y ++L +P+
Sbjct: 33 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 69
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 425 TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484
+ N Y K G E ++ K +ELDP ++ + G + +YD+A+E YQ+ L
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 485 KHDPQN 490
+ DP++
Sbjct: 65 ELDPRS 70
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKP 67
GNA + GDY+ A+ ++ +A+ L P + + N A+ +Y +A+ +K +EL P
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 39 YSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98
+ N A+ +Y +A+ +K +EL P ++ + LG A+ DY EA+ Y+K L+
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 99 IDP 101
+DP
Sbjct: 66 LDP 68
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELD 280
GNA YK+ ++++AIE+Y ALELD
Sbjct: 44 GNAYYKQGDYDEAIEYYQKALELD 67
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455
GN ++KQ Y EAI++Y ++L +P + + N Y K G E ++ K +ELDP
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312
GNA YK+ ++++AIE+Y ALELD + N Y + G Y+E I+ KA+E
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
GNA + GDY+ A+ ++ +A+ L P+N + N A+ +Y +A+ +K +EL P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 69 WSKGYSRLGAA 79
++ LG A
Sbjct: 76 NAEAKQNLGNA 86
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 30 SLSPDNHV-LYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIE 88
++ P N + N A+ +Y +A+ +K +EL P+ ++ + LG A+ DY E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 89 AVNSYKKGLDIDPNN 103
A+ Y+K L++DPNN
Sbjct: 62 AIEYYQKALELDPNN 76
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 424 RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483
+ N Y K G E ++ K +ELDP ++ + G + +YD+A+E YQ+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 484 LKHDPQNQE 492
L+ DP N E
Sbjct: 70 LELDPNNAE 78
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 30/113 (26%)
Query: 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIF 384
A A G A K DY+ AIE +QKAL
Sbjct: 9 AEAWYNLGNAYYKQG----DYDEAIEYYQKALE--------------------------L 38
Query: 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG 437
DP A+ GN ++KQ Y EAI++Y ++L +P + N K G
Sbjct: 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELD 280
GNA YK+ ++++AIE+Y ALELD
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELD 73
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 16/131 (12%)
Query: 393 REKGNEFFKQQKYPEAIQHYTESL----------------RRNPKDPRTYSNRAACYTKL 436
+E+GNEFFK+ + EAI Y E+L ++ + N A CY K
Sbjct: 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101
Query: 437 GAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496
P+ + A K +++D K + G + ++A E + +P N ++ +
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 161
Query: 497 VRRCVQQINKA 507
CV ++ +A
Sbjct: 162 YELCVNKLKEA 172
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISL--SP-DNHVLYSNRSAAHASLHNYADALADA 59
++ + +GN F GDY A+ +T+A+ L +P D VL+ NR+A H L +Y A +A
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 60 KKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104
K +E K R A L +AV ++ + ++P N+
Sbjct: 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 393 REKGNEFFKQQKYPEAIQHYTESLRRN--PKDPRT-YSNRAACYTKLGAMPEGLKDADKC 449
R++GNE FK Y A+ YT++L + P+D + NRAAC+ KL + +A K
Sbjct: 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91
Query: 450 IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVR 498
IE D K R+ L D+A+ Q + +P+N+ + +R
Sbjct: 92 IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 9/115 (7%)
Query: 257 GNAAYKKKEFEKAIEHYSSALELD--DEDISYL-TNRAAVYLEMGKYEECIKDCDKAVER 313
GN +K ++ A+ Y+ AL LD +D + L NRAA +L++ Y++ + KA+E+
Sbjct: 35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94
Query: 314 -GRELRSDFKMIARALTRKG---TALVKMAKCSKDYEPAIETFQKALTEHRNPDT 364
G ++++ ++ ++AL + G A++ + +C EP + FQ+AL P +
Sbjct: 95 DGGDVKALYRR-SQALEKLGRLDQAVLDLQRCV-SLEPKNKVFQEALRNISGPSS 147
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 388 IADEEREKGNEFFKQQKYPEAIQHYTESLR----------------RNPKDPRTYSNRAA 431
I+++ + GN FFK Q + AI+ YT+ LR P N A
Sbjct: 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGA 281
Query: 432 CYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491
C K+ + + +E+DP+ +K R+ LKEYD+AL ++ + P+++
Sbjct: 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341
Query: 492 ELLDGVRRCVQQI 504
+ + + Q+I
Sbjct: 342 AIQAELLKVKQKI 354
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAK 60
++++ K GN F S ++E A++ +T+ + + +R+AA AD
Sbjct: 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVL------RYVEGSRAAAED---------ADGA 266
Query: 61 KTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
K L+P +GA L + D+ AV+S + L+IDP+N
Sbjct: 267 K---LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 306
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
G D++ AV EA+ + P N R+ L Y ALAD KK E+ P+
Sbjct: 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444
++++E+GN FKQ Y EA+ Y + + P++P YSN+A KLG + ++
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADAL 56
++ K +GN+ F G Y AV + + I+ P N V YSN++ A L Y A+
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAI 58
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 393 REKGNEFFKQQKYPEAIQHYTES--------LRRNPKDPR----------TYSNRAACYT 434
R+KGNE F Q+ Y EAI Y ++ LR P +P Y+N + CY
Sbjct: 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL 74
Query: 435 KLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488
+G + E + + + ++ + T K R+ + + D+A E + L++ P
Sbjct: 75 NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 53/119 (44%)
Query: 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKD 445
P+ A + +Q K EA+ HY E++R +P YSN ++ + L+
Sbjct: 40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQC 99
Query: 446 ADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQI 504
+ I+++P F+ ++ +I +A+ +Y+ LK P + + C+Q +
Sbjct: 100 YTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDAD 447
+A+ +RE+GN EA++ Y ++L P+ +SN A+ + G + E L
Sbjct: 15 LANIKREQGN-------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488
+ I + PTF+ Y+ G +++ AL+ Y ++ +P
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
AD N G+ E AVR + +A+ + P+ +SN ++ +AL K+
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDP 101
+ + P ++ YS +G +QD A+ Y + + I+P
Sbjct: 69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 16 GDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSR 75
G + A+ H+ EAI +SP YSN + + AL + +++ P ++ +S
Sbjct: 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 76 LGAAHLGLQDYIEAVNSYKKGLDIDPN 102
L + H + EA+ SY+ L + P+
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPD 143
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
AD GN D + A++ +T AI ++P +SN ++ H N +A+A +
Sbjct: 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99
++LKPD+ Y L + D+ + KK + I
Sbjct: 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 40/178 (22%)
Query: 258 NAAYKKKE---FEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG 314
N A K+E E+A+ Y ALE+ E + +N A+V + GK +E + +A+
Sbjct: 14 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--- 70
Query: 315 RELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXX 374
+ F A A + G L +M +D + A++ + +A+
Sbjct: 71 -RISPTF---ADAYSNMGNTLKEM----QDVQGALQCYTRAIQ----------------- 105
Query: 375 XXXXXXXXIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAAC 432
+P AD + PEAI Y +L+ P P Y N A C
Sbjct: 106 ---------INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 46/74 (62%)
Query: 28 AISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYI 87
A+ ++P++ L+++ + +NY A A+ ++ VEL+PD ++ +++LGA
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 88 EAVNSYKKGLDIDP 101
EA+++Y + LDI+P
Sbjct: 224 EALDAYNRALDINP 237
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 46/74 (62%)
Query: 28 AISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYI 87
A+ ++P++ L+++ + +NY A A+ ++ VEL+PD ++ +++LGA
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 88 EAVNSYKKGLDIDP 101
EA+++Y + LDI+P
Sbjct: 224 EALDAYNRALDINP 237
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
G ++G A+ F A+ PDN++ Y R+ ++ AL D K ++LK D
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 69 WSKGYSRLGAAHLGLQD--YIEAVNSYKKGLDIDPN 102
++ +RL HL L+ EA + +KK L +P+
Sbjct: 93 FTA--ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 96/252 (38%), Gaps = 32/252 (12%)
Query: 269 AIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328
A+ + +A++ D ++ RA V+L MGK + + D K + +L+ DF A
Sbjct: 45 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI----QLKMDF---TAAR 97
Query: 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXXXXXXXXIFDPKI 388
++G L+K K + A + F+K L NP +
Sbjct: 98 LQRGHLLLKQGKL----DEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRL----- 146
Query: 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448
R + F Y AI + L D RA C+ K G + + D
Sbjct: 147 ----RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202
Query: 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCV---QQIN 505
+L ++ + + + + L +++ +L +E LK D + +RC +Q+
Sbjct: 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-------KRCFAHYKQVK 255
Query: 506 KAGRGELSPEEL 517
K + S EEL
Sbjct: 256 KLNKLIESAEEL 267
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/110 (16%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 394 EKGNEFFKQQKYPEAIQHYTESLRRNPK----DPRTYSNRAACYTKLGAMPEGLKDADKC 449
E E + +Y +A Y ++ P R+ C++K E ++ +
Sbjct: 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321
Query: 450 IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRR 499
++++P + + YD+A++ Y+ +H+ +Q++ +G+ +
Sbjct: 322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 44/92 (47%)
Query: 12 AFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSK 71
AF SGDY AA+ + + + + L R+ A++D K +LK D ++
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
+ ++ + L D+ +++ ++ L +D ++
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
G ++G A+ F A+ PDN++ Y R+ + AL D K ++LK D
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXD 92
Query: 69 WSKGYSRLGAAHLGLQD--YIEAVNSYKKGLDIDPN 102
++ +RL HL L+ EA + +KK L +P+
Sbjct: 93 FTA--ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 44/92 (47%)
Query: 12 AFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSK 71
AF SGDY AA+ + + + + L R+ A++D K +LK D ++
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103
+ ++ + L D+ +++ ++ L +D ++
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
G ++G A+ F A+ PDN++ Y R+ + AL D K + LK D
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXD 69
Query: 69 WSKGYSRLGAAHLGLQD--YIEAVNSYKKGLDIDPNNE 104
++ +RL HL L+ EA + +KK L +P+ +
Sbjct: 70 FTA--ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP 454
+G+EF +K EA +T+++ N +D Y N A + + + L DK +ELD
Sbjct: 32 RGSEFGDYEKAAEA---FTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88
Query: 455 TFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494
+ + Y G + + Y +A + +++ L+ +N +L
Sbjct: 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF 128
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 16 GDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSR 75
GDYE A FT+AI + ++ + Y N + +S++ ALA K +EL + Y
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 76 LGAAHLGLQDYIEAVNSYKKGL 97
G ++ + Y EA + ++K L
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKAL 118
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 265 EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324
E E+A+ Y ALELD + VY+ Y+E +KA+ G E F M+
Sbjct: 72 ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131
Query: 325 ARALTRKGTALVKM 338
GT LVK+
Sbjct: 132 -------GTVLVKL 138
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 77/208 (37%), Gaps = 42/208 (20%)
Query: 261 YKKKEFEKAIEHYSSALELDDEDISYLTNRAAV-YLEMGKYEECIKDCD---KAVERGRE 316
+K + +AIE ++ LE + Y+ NR AV Y E+ KY+ KD + V +
Sbjct: 14 FKNNNYAEAIEVFNK-LEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA 72
Query: 317 LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTXXXXXXXXXXXX 376
+DF+ + L +KG + AI+ +Q A+
Sbjct: 73 KSADFEYYGKILXKKGQDSL-----------AIQQYQAAVDR------------------ 103
Query: 377 XXXXXXIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL 436
D D + G+ F+ + +P AIQ+ + +R DP+ + Y
Sbjct: 104 --------DTTRLDXYGQIGSYFYNKGNFPLAIQYXEKQIRPTTTDPKVFYELGQAYYYN 155
Query: 437 GAMPEGLKDADKCIELDPTFSKGYTRKG 464
+ K +EL P GY +
Sbjct: 156 KEYVKADSSFVKVLELKPNIYIGYLWRA 183
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDAD 447
D E + FK Y EAI+ + + + P Y+ RA CY +L KD +
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455
G + + +Y A+ + +L+ NP+DP A KLG + L++ + P
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71
Query: 456 FSKGYT 461
+ GY
Sbjct: 72 YLGGYM 77
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%)
Query: 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKG 96
V+ N+S +++++ +AL KKT + W+ ++ LG A+ L+ Y A+++ +G
Sbjct: 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542
Query: 97 LDIDPNN 103
L + N+
Sbjct: 543 LLLSTND 549
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 389 ADEEREKGNEFFKQQKYPEAIQHYTESLR---------------------RNPKDPRTYS 427
AD + GN FK++K EA+Q Y ++ +NP +
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP----CHL 234
Query: 428 NRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487
N AAC KL E + + + + K R+G + L + D A + +++ K+
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294
Query: 488 PQNQELLDGVRRCVQQ 503
P ++ + +R +Q
Sbjct: 295 PDDKAIRRELRALAEQ 310
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 48/158 (30%)
Query: 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDAD 447
I D++R KG+ + AI+ Y + L+ +P + T Y +G + ++
Sbjct: 11 IGDKKRTKGD-------FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLK 63
Query: 448 KCIELDPTFSKGYTRKGAIQFFL----------------------------------KEY 473
K + LD T ++ Y G+ F + E+
Sbjct: 64 KFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH 123
Query: 474 DKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511
DKA+E Y++ + P G R Q I A G+
Sbjct: 124 DKAIEAYEKTISIKP-------GFIRAYQSIGLAYEGK 154
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
G+A F + +AA+ AI+L+ Y + S+ + A+ +KT+ +KP
Sbjct: 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139
Query: 69 WSKGYSRLGAAH--LGLQDYIEAVNSY 93
+ + Y +G A+ GL+D EAV +
Sbjct: 140 FIRAYQSIGLAYEGKGLRD--EAVKYF 164
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 14 SSGDYEAAVRHFTEAISLSPDN--HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSK 71
+ GD++ A+R + + + P+N +L ++ L N DA+ KK V L ++
Sbjct: 17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPN--DAIESLKKFVVLDTTSAE 74
Query: 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDID 100
Y LG+A+ + + A+++ ++ + ++
Sbjct: 75 AYYILGSANFMIDEKQAAIDALQRAIALN 103
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 17 DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSR 75
+Y + H + ++ DN Y R AHA++ N +A AD K +EL P + SR
Sbjct: 75 EYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPVVSR 133
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 17 DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSR 75
+Y + H + ++ DN Y R AHA++ N +A AD K +EL P + SR
Sbjct: 81 EYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPVVSR 139
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 412 YTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF 469
++++L P P ++ T+ G + D +ELDPT++ + +G ++
Sbjct: 66 FSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 29/136 (21%)
Query: 287 LTNRAAVYLEMGKYEECIKDCDKAVE-RGRELRSDFKMIARALTRKGTALVKMAKCSKDY 345
L N A +Y + GKY+E C +A+E R + L D +A+ L L + + Y
Sbjct: 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN----LALLCQNQGKY 169
Query: 346 EPAIETFQKALTEHRN---PDTXXXXXXXXXXXXXXXXXXIFDPKIADEEREKGNEFFKQ 402
E +Q+AL ++ PD DP +A + + + KQ
Sbjct: 170 EEVEYYYQRALEIYQTKLGPD---------------------DPNVAKTKNNLASCYLKQ 208
Query: 403 QKYPEAIQHYTESLRR 418
K+ +A Y E L R
Sbjct: 209 GKFKQAETLYKEILTR 224
>pdb|4I17|A Chain A, Crystal Structure Of A Hypothetical Protein (Bf2334) From
Bacteroides Fragilis Nctc 9343 At 1.50 A Resolution
Length = 228
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 393 REKGNEFFKQQKYPEAIQHYTESLR-RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIE 451
+ +GN+ + Y A + Y+E L+ N +D T N C + E D I+
Sbjct: 11 KNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK 70
Query: 452 LDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQEL 493
+ + Y K A K + + T EG+K P N +
Sbjct: 71 KNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKAVPGNATI 112
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
D A G A +G + +++ +PDN + + + + Y A+ K
Sbjct: 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102
E P RLG A L + EA++S+K L + PN
Sbjct: 102 VAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPN 142
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD 68
G A +G + +I+ +PDN + + + + Y A+ K E P
Sbjct: 49 GIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPV 108
Query: 69 WSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102
RLG A L + EA++S+K L + PN
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%)
Query: 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452
R+KG K +Y EA+ + + D + Y K GA+ G + ++ I
Sbjct: 12 RDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIAD 71
Query: 453 DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490
P K T G +++YD A+ + + +P N
Sbjct: 72 APDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVN 109
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
D A G A +G + +++ +PDN + + + + Y A+ K
Sbjct: 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102
E P RLG A L + EA++S+K L + PN
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 46 HASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99
H N + ALA ++ VE PD+ Y LG + L +A+++Y +G+++
Sbjct: 17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 419 NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE 478
+P+DP T A + K L ++ +E DP + Y G + L D A++
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 479 TYQEGLK 485
TY +G++
Sbjct: 63 TYAQGIE 69
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat
Domain Protein Sru_0103 From Salinibacter Ruber,
Northeast Structural Genomics Consortium (Nesg) Target
Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat
Domain Protein Sru_0103 From Salinibacter Ruber,
Northeast Structural Genomics Consortium (Nesg) Target
Srr115c
Length = 99
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 46 HASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99
H N + ALA ++ VE PD+ Y LG + L +A+++Y +G+++
Sbjct: 16 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 69
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 419 NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE 478
+P+DP T A + K L ++ +E DP + Y G + L D A++
Sbjct: 2 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 61
Query: 479 TYQEGLK 485
TY +G++
Sbjct: 62 TYAQGIE 68
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%)
Query: 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKK 61
D A G A +G + +++ +PDN + + + + Y A+ K
Sbjct: 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102
E P RLG A L + EA++S+K L + PN
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN----HVLYSNRSAAHASLHNYADAL--- 56
E +G SGD A V F A+ + ++ +YS A+ LH+YA AL
Sbjct: 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 70
Query: 57 ---ADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99
+T+ + +K LG L ++ EA+ ++ LDI
Sbjct: 71 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 15 SGDYEAAVRHFTEAISLSPDN----HVLYSNRSAAHASLHNYADAL------ADAKKTVE 64
SGD A V F A+ + ++ +YS A+ LH+YA AL +T+
Sbjct: 20 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 79
Query: 65 LKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99
+ +K LG L ++ EA+ ++ LDI
Sbjct: 80 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 114
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 15 SGDYEAAVRHFTEAISLSPDN----HVLYSNRSAAHASLHNYADAL------ADAKKTVE 64
SGD A V F A+ + ++ +YS A+ LH+YA AL +T+
Sbjct: 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 77
Query: 65 LKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99
+ +K LG L ++ EA+ ++ LDI
Sbjct: 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVL 38
GNA GD++ A+ ++ AI L+PD+ L
Sbjct: 42 GNAYRKLGDWQKALNNYQSAIELNPDSPAL 71
>pdb|3JYS|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Yp_001298690.1) From Bacteroides Vulgatus Atcc 8482 At
2.00 A Resolution
Length = 499
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 291 AAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327
A +Y +Y ECI C++ ++ G +L ++ + +A
Sbjct: 201 AEIYTGKARYTECINACNEVIKAGYQLADNYADLFKA 237
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
Length = 138
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 258 NAAYKKKEFEKAIEHYSSALELDDED 283
N Y KK+ KA ++YS A L+D+D
Sbjct: 69 NGKYVKKDLRKAAQYYSKACGLNDQD 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,003,243
Number of Sequences: 62578
Number of extensions: 531695
Number of successful extensions: 1617
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1149
Number of HSP's gapped (non-prelim): 378
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)