Query 009799
Match_columns 525
No_of_seqs 955 out of 1537
Neff 11.8
Searched_HMMs 46136
Date Thu Mar 28 17:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.3E-48 2.8E-53 347.2 30.0 385 2-509 116-508 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 3.6E-48 7.9E-53 344.3 30.8 428 3-519 49-484 (966)
3 KOG0548 Molecular co-chaperone 100.0 5.2E-44 1.1E-48 314.1 43.8 473 1-504 1-473 (539)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-38 2.5E-43 314.9 45.3 431 2-493 127-578 (615)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-37 4.5E-42 325.9 47.1 454 4-517 433-897 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-36 1.4E-40 314.5 46.6 461 3-520 398-866 (899)
7 PRK11447 cellulose synthase su 100.0 6.6E-36 1.4E-40 313.8 45.6 419 7-519 274-739 (1157)
8 KOG0547 Translocase of outer m 100.0 1.1E-35 2.5E-40 257.8 34.0 439 2-497 115-577 (606)
9 PRK11447 cellulose synthase su 100.0 1.6E-34 3.5E-39 303.4 47.1 469 3-518 29-698 (1157)
10 TIGR00990 3a0801s09 mitochondr 100.0 7.9E-33 1.7E-37 273.4 46.0 407 3-489 161-600 (615)
11 PRK15174 Vi polysaccharide exp 100.0 1.6E-33 3.5E-38 276.8 39.8 353 5-507 45-407 (656)
12 PRK09782 bacteriophage N4 rece 100.0 1.3E-30 2.7E-35 261.6 44.4 107 3-113 45-151 (987)
13 KOG2002 TPR-containing nuclear 100.0 2.2E-31 4.7E-36 249.9 36.1 424 3-507 271-766 (1018)
14 KOG2002 TPR-containing nuclear 100.0 3.2E-31 6.9E-36 248.8 35.0 422 19-516 147-705 (1018)
15 PRK15174 Vi polysaccharide exp 100.0 5.6E-31 1.2E-35 258.9 37.3 352 11-520 14-381 (656)
16 PRK10049 pgaA outer membrane p 100.0 3.3E-30 7.1E-35 259.1 42.4 398 9-495 22-465 (765)
17 KOG0624 dsRNA-activated protei 100.0 4.7E-30 1E-34 213.3 32.5 345 3-507 39-391 (504)
18 PRK09782 bacteriophage N4 rece 100.0 8.8E-28 1.9E-32 241.3 44.7 254 243-511 468-731 (987)
19 PRK10049 pgaA outer membrane p 100.0 1.1E-28 2.5E-33 248.0 36.9 414 22-520 2-456 (765)
20 KOG1126 DNA-binding cell divis 100.0 1.5E-28 3.2E-33 222.6 27.1 307 36-492 317-626 (638)
21 KOG1155 Anaphase-promoting com 100.0 5.7E-27 1.2E-31 202.8 34.1 352 5-505 167-555 (559)
22 KOG1126 DNA-binding cell divis 100.0 3.3E-28 7.2E-33 220.4 26.0 220 257-513 394-613 (638)
23 PRK11788 tetratricopeptide rep 100.0 9.5E-27 2.1E-31 219.4 35.1 309 36-519 35-346 (389)
24 PRK14574 hmsH outer membrane p 100.0 9.5E-26 2.1E-30 222.1 42.8 433 2-517 34-510 (822)
25 PRK11788 tetratricopeptide rep 100.0 2.2E-26 4.8E-31 216.9 35.5 303 4-490 37-355 (389)
26 KOG0547 Translocase of outer m 100.0 2E-26 4.3E-31 200.7 30.3 390 5-455 152-569 (606)
27 KOG2076 RNA polymerase III tra 100.0 1.4E-25 3.1E-30 209.8 37.1 371 3-509 140-544 (895)
28 KOG1155 Anaphase-promoting com 100.0 6.8E-25 1.5E-29 190.1 37.0 382 5-519 81-494 (559)
29 KOG1173 Anaphase-promoting com 100.0 3.3E-25 7.2E-30 196.8 34.2 425 4-504 51-536 (611)
30 KOG2003 TPR repeat-containing 99.9 1.1E-25 2.4E-30 194.5 22.2 477 4-506 203-709 (840)
31 PRK14574 hmsH outer membrane p 99.9 1.9E-22 4E-27 199.0 44.6 422 7-495 73-522 (822)
32 KOG0550 Molecular chaperone (D 99.9 8.7E-25 1.9E-29 186.7 20.1 317 2-506 49-369 (486)
33 KOG2076 RNA polymerase III tra 99.9 7.3E-23 1.6E-27 191.8 34.3 327 36-514 139-506 (895)
34 KOG1173 Anaphase-promoting com 99.9 5.1E-23 1.1E-27 183.1 28.8 289 3-467 245-533 (611)
35 KOG4162 Predicted calmodulin-b 99.9 8.2E-22 1.8E-26 181.8 33.1 418 4-492 325-789 (799)
36 KOG2003 TPR repeat-containing 99.9 3.3E-23 7.3E-28 179.4 21.8 430 7-472 242-709 (840)
37 TIGR00540 hemY_coli hemY prote 99.9 2.1E-21 4.7E-26 181.7 34.3 302 4-485 86-398 (409)
38 KOG1174 Anaphase-promoting com 99.9 1.8E-21 3.9E-26 166.6 30.3 332 26-507 185-521 (564)
39 PF13429 TPR_15: Tetratricopep 99.9 2.6E-24 5.7E-29 191.7 13.3 268 31-485 5-276 (280)
40 KOG0495 HAT repeat protein [RN 99.9 3.1E-20 6.8E-25 168.0 37.4 376 4-502 518-896 (913)
41 PF13429 TPR_15: Tetratricopep 99.9 5.2E-24 1.1E-28 189.8 13.4 262 6-452 12-277 (280)
42 TIGR00540 hemY_coli hemY prote 99.9 3.8E-21 8.3E-26 180.0 32.3 308 37-519 85-398 (409)
43 KOG0495 HAT repeat protein [RN 99.9 6.5E-20 1.4E-24 166.0 36.7 377 4-508 481-868 (913)
44 KOG0548 Molecular co-chaperone 99.9 4.6E-21 9.9E-26 170.1 28.8 407 39-519 5-454 (539)
45 KOG0624 dsRNA-activated protei 99.9 1.8E-21 3.8E-26 162.7 24.3 305 32-519 34-369 (504)
46 KOG1125 TPR repeat-containing 99.9 4.7E-22 1E-26 177.9 22.1 244 254-508 289-559 (579)
47 KOG1156 N-terminal acetyltrans 99.9 8.4E-20 1.8E-24 165.4 36.5 248 4-328 9-263 (700)
48 PRK12370 invasion protein regu 99.9 3.8E-21 8.3E-26 186.7 30.1 193 256-487 344-536 (553)
49 PRK12370 invasion protein regu 99.9 3.2E-21 6.9E-26 187.3 29.1 263 5-453 261-536 (553)
50 KOG1125 TPR repeat-containing 99.9 1E-21 2.2E-26 175.8 22.3 262 6-443 289-562 (579)
51 PRK10747 putative protoheme IX 99.9 9.4E-20 2E-24 169.6 35.4 298 3-487 85-391 (398)
52 KOG1129 TPR repeat-containing 99.9 7.2E-22 1.6E-26 163.9 18.0 275 11-466 188-472 (478)
53 KOG1129 TPR repeat-containing 99.9 1.5E-21 3.2E-26 162.1 17.5 246 6-432 227-472 (478)
54 KOG1127 TPR repeat-containing 99.9 1.1E-20 2.3E-25 178.6 25.3 420 9-510 426-903 (1238)
55 COG3063 PilF Tfp pilus assembl 99.9 4.6E-20 1E-24 146.2 24.8 214 248-496 33-246 (250)
56 PRK11189 lipoprotein NlpI; Pro 99.9 1.3E-20 2.9E-25 167.7 24.8 90 16-105 40-133 (296)
57 PRK11189 lipoprotein NlpI; Pro 99.9 5.3E-20 1.1E-24 163.9 28.3 217 248-506 62-286 (296)
58 PRK10747 putative protoheme IX 99.9 3.4E-19 7.4E-24 165.9 33.1 302 37-518 85-388 (398)
59 COG3063 PilF Tfp pilus assembl 99.9 3.6E-20 7.7E-25 146.8 21.6 204 2-360 35-238 (250)
60 KOG4162 Predicted calmodulin-b 99.9 3.6E-19 7.9E-24 164.5 30.9 436 11-519 293-782 (799)
61 KOG1174 Anaphase-promoting com 99.9 2.4E-19 5.3E-24 153.6 26.7 311 8-468 202-516 (564)
62 TIGR02521 type_IV_pilW type IV 99.9 1.4E-19 3E-24 158.3 26.4 206 248-488 29-234 (234)
63 PLN03081 pentatricopeptide (PP 99.9 1E-18 2.2E-23 176.0 34.9 241 250-506 325-603 (697)
64 COG2956 Predicted N-acetylgluc 99.9 3.6E-18 7.7E-23 142.0 30.2 281 40-495 39-320 (389)
65 KOG1156 N-terminal acetyltrans 99.9 1E-16 2.2E-21 145.7 40.9 423 2-511 41-502 (700)
66 PLN03081 pentatricopeptide (PP 99.9 9.7E-18 2.1E-22 168.9 37.7 412 5-522 90-559 (697)
67 PLN03218 maturation of RBCL 1; 99.8 2.1E-16 4.5E-21 161.1 46.1 385 5-490 373-789 (1060)
68 TIGR02521 type_IV_pilW type IV 99.8 7.4E-19 1.6E-23 153.7 24.9 201 2-357 31-231 (234)
69 PLN03077 Protein ECB2; Provisi 99.8 4.6E-17 1E-21 168.1 39.3 448 5-522 225-722 (857)
70 PLN02789 farnesyltranstransfer 99.8 2.4E-18 5.1E-23 152.3 25.1 223 247-504 34-268 (320)
71 PLN03218 maturation of RBCL 1; 99.8 7.9E-16 1.7E-20 156.9 45.8 378 11-490 415-820 (1060)
72 KOG1840 Kinesin light chain [C 99.8 1.3E-17 2.8E-22 153.9 28.4 213 250-485 241-478 (508)
73 PLN02789 farnesyltranstransfer 99.8 8.9E-18 1.9E-22 148.6 25.8 92 406-497 200-313 (320)
74 KOG2376 Signal recognition par 99.8 5.2E-15 1.1E-19 133.3 42.2 411 3-506 13-507 (652)
75 KOG3785 Uncharacterized conser 99.8 7.6E-16 1.6E-20 129.9 33.3 381 10-513 30-450 (557)
76 PLN03077 Protein ECB2; Provisi 99.8 4.8E-16 1E-20 160.7 39.3 202 288-506 528-766 (857)
77 KOG1840 Kinesin light chain [C 99.8 3.5E-17 7.6E-22 151.1 26.9 261 32-452 195-479 (508)
78 KOG1915 Cell cycle control pro 99.8 1.1E-14 2.3E-19 127.8 39.8 438 4-503 75-552 (677)
79 COG2956 Predicted N-acetylgluc 99.8 1.4E-15 3E-20 126.9 31.9 272 6-422 39-315 (389)
80 KOG0550 Molecular chaperone (D 99.8 2E-18 4.3E-23 148.3 15.5 263 248-521 47-351 (486)
81 TIGR03302 OM_YfiO outer membra 99.8 3.5E-17 7.5E-22 142.3 22.5 185 2-315 33-234 (235)
82 KOG1127 TPR repeat-containing 99.8 5.2E-16 1.1E-20 147.5 31.7 431 2-511 492-987 (1238)
83 cd05804 StaR_like StaR_like; a 99.8 1E-15 2.2E-20 142.5 31.3 316 32-487 2-337 (355)
84 PF12569 NARP1: NMDA receptor- 99.8 2.5E-14 5.5E-19 134.2 39.4 280 2-359 4-292 (517)
85 PRK15359 type III secretion sy 99.8 3E-17 6.5E-22 128.7 15.3 128 376-506 14-141 (144)
86 KOG1915 Cell cycle control pro 99.8 1.2E-13 2.6E-18 121.4 37.6 395 23-510 60-490 (677)
87 KOG0553 TPR repeat-containing 99.7 2.6E-17 5.6E-22 136.5 12.0 119 2-120 81-199 (304)
88 KOG3785 Uncharacterized conser 99.7 4.3E-14 9.3E-19 119.5 29.6 390 6-490 61-494 (557)
89 TIGR03302 OM_YfiO outer membra 99.7 1.2E-15 2.6E-20 132.6 20.4 203 244-489 27-235 (235)
90 KOG0553 TPR repeat-containing 99.7 5.4E-16 1.2E-20 128.8 14.5 120 389-508 81-200 (304)
91 PRK15359 type III secretion sy 99.7 8.9E-16 1.9E-20 120.4 13.9 114 4-117 26-139 (144)
92 PRK10370 formate-dependent nit 99.7 3.9E-15 8.4E-20 123.3 17.6 127 371-497 55-184 (198)
93 KOG1130 Predicted G-alpha GTPa 99.7 5.8E-15 1.3E-19 127.2 18.9 319 4-473 19-371 (639)
94 cd05804 StaR_like StaR_like; a 99.7 3.9E-14 8.5E-19 131.8 25.2 210 246-489 2-218 (355)
95 PF12569 NARP1: NMDA receptor- 99.7 5.4E-13 1.2E-17 125.3 32.0 316 35-452 3-334 (517)
96 PRK14720 transcript cleavage f 99.7 1.6E-13 3.5E-18 134.6 29.4 287 29-492 24-312 (906)
97 KOG3060 Uncharacterized conser 99.7 8.4E-14 1.8E-18 112.4 22.5 210 264-510 26-244 (289)
98 COG3071 HemY Uncharacterized e 99.7 4.9E-12 1.1E-16 109.4 33.7 118 3-120 85-203 (400)
99 TIGR02552 LcrH_SycD type III s 99.7 6.3E-15 1.4E-19 115.8 15.1 127 377-503 5-131 (135)
100 COG3071 HemY Uncharacterized e 99.6 8.7E-12 1.9E-16 107.8 32.4 131 40-315 88-218 (400)
101 PRK15363 pathogenicity island 99.6 2.4E-14 5.1E-19 109.1 14.2 121 384-504 29-153 (157)
102 KOG1130 Predicted G-alpha GTPa 99.6 3.6E-14 7.8E-19 122.4 16.5 236 253-513 98-377 (639)
103 KOG2376 Signal recognition par 99.6 1.2E-11 2.7E-16 112.0 33.0 361 38-519 14-486 (652)
104 KOG4340 Uncharacterized conser 99.6 4.5E-13 9.8E-18 110.8 21.9 355 11-491 19-448 (459)
105 KOG3060 Uncharacterized conser 99.6 5E-13 1.1E-17 108.0 21.2 187 247-470 49-238 (289)
106 COG5010 TadD Flp pilus assembl 99.6 1.8E-13 4E-18 111.7 17.6 181 264-482 47-227 (257)
107 PF04733 Coatomer_E: Coatomer 99.6 2.1E-13 4.5E-18 119.5 19.5 166 253-458 105-271 (290)
108 KOG1128 Uncharacterized conser 99.6 1.2E-13 2.6E-18 127.9 18.3 233 248-500 396-632 (777)
109 PRK14720 transcript cleavage f 99.6 3.2E-13 6.9E-18 132.6 22.1 225 244-519 25-282 (906)
110 PRK15363 pathogenicity island 99.6 5.4E-14 1.2E-18 107.2 13.0 103 3-105 36-138 (157)
111 COG5010 TadD Flp pilus assembl 99.6 4.6E-13 1E-17 109.4 19.2 176 302-515 51-226 (257)
112 PRK10370 formate-dependent nit 99.6 6.2E-13 1.3E-17 110.2 20.5 156 255-458 21-179 (198)
113 PLN03088 SGT1, suppressor of 99.6 3.8E-14 8.2E-19 129.2 14.4 119 1-119 1-119 (356)
114 KOG2047 mRNA splicing factor [ 99.6 2.3E-10 5E-15 104.9 36.6 393 18-488 84-581 (835)
115 PRK04841 transcriptional regul 99.5 3.1E-11 6.6E-16 126.9 33.1 353 3-490 375-764 (903)
116 PRK15179 Vi polysaccharide bio 99.5 1.4E-12 3E-17 127.3 20.9 138 325-492 86-223 (694)
117 PF04733 Coatomer_E: Coatomer 99.5 1.2E-12 2.6E-17 114.8 18.4 189 266-496 82-275 (290)
118 PRK15179 Vi polysaccharide bio 99.5 7.2E-12 1.6E-16 122.4 24.2 157 267-460 69-225 (694)
119 TIGR02552 LcrH_SycD type III s 99.5 4.8E-13 1E-17 105.1 13.1 109 3-111 18-126 (135)
120 PLN03088 SGT1, suppressor of 99.5 6.8E-13 1.5E-17 121.0 15.4 116 392-507 5-120 (356)
121 PRK10866 outer membrane biogen 99.5 1.5E-11 3.2E-16 105.3 22.3 179 3-310 33-238 (243)
122 PF13525 YfiO: Outer membrane 99.5 9.9E-12 2.1E-16 104.1 20.9 174 2-304 5-198 (203)
123 PRK04841 transcriptional regul 99.5 8.1E-11 1.8E-15 123.8 31.9 382 5-519 344-759 (903)
124 KOG1128 Uncharacterized conser 99.5 1.2E-12 2.7E-17 121.3 15.6 218 281-517 395-613 (777)
125 COG4783 Putative Zn-dependent 99.4 2.4E-11 5.2E-16 108.2 20.0 117 3-119 307-423 (484)
126 KOG2047 mRNA splicing factor [ 99.4 3.8E-08 8.2E-13 90.8 39.7 236 242-486 341-615 (835)
127 KOG4648 Uncharacterized conser 99.4 1.4E-13 3E-18 116.0 4.6 235 4-361 99-333 (536)
128 COG4783 Putative Zn-dependent 99.4 1.7E-10 3.7E-15 102.9 21.7 156 281-490 303-458 (484)
129 TIGR02795 tol_pal_ybgF tol-pal 99.4 7.3E-12 1.6E-16 96.1 11.9 107 2-108 2-114 (119)
130 COG4235 Cytochrome c biogenesi 99.4 4.4E-11 9.5E-16 100.8 17.1 134 371-504 138-274 (287)
131 PF13525 YfiO: Outer membrane 99.4 2.1E-10 4.7E-15 96.0 20.3 182 248-442 3-197 (203)
132 KOG0543 FKBP-type peptidyl-pro 99.4 9E-12 1.9E-16 108.7 12.2 119 2-120 208-341 (397)
133 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.9E-11 4.2E-16 93.8 12.9 108 389-496 2-115 (119)
134 PRK10866 outer membrane biogen 99.4 3.4E-10 7.3E-15 97.0 21.7 186 249-447 31-236 (243)
135 PRK15331 chaperone protein Sic 99.4 2.3E-11 5E-16 93.2 12.9 125 384-509 32-156 (165)
136 KOG4234 TPR repeat-containing 99.3 1.4E-11 3E-16 95.8 11.0 114 2-115 95-213 (271)
137 PF13414 TPR_11: TPR repeat; P 99.3 4E-12 8.8E-17 86.2 6.7 66 2-67 3-69 (69)
138 KOG4648 Uncharacterized conser 99.3 3.6E-12 7.7E-17 107.6 7.2 240 253-504 100-348 (536)
139 cd00189 TPR Tetratricopeptide 99.3 3.2E-11 6.9E-16 88.9 11.6 99 4-102 2-100 (100)
140 PRK15331 chaperone protein Sic 99.3 4.1E-11 8.8E-16 91.9 12.0 111 3-114 38-148 (165)
141 PF12895 Apc3: Anaphase-promot 99.3 5E-12 1.1E-16 89.3 6.6 82 14-96 1-84 (84)
142 KOG0543 FKBP-type peptidyl-pro 99.3 3.2E-11 6.9E-16 105.3 12.6 120 391-510 210-344 (397)
143 PF13414 TPR_11: TPR repeat; P 99.3 8.4E-12 1.8E-16 84.6 7.2 67 422-488 2-69 (69)
144 KOG3081 Vesicle coat complex C 99.3 1.2E-08 2.5E-13 83.9 25.3 168 252-459 110-278 (299)
145 PRK02603 photosystem I assembl 99.3 8.7E-11 1.9E-15 96.0 13.4 106 385-490 31-153 (172)
146 COG4785 NlpI Lipoprotein NlpI, 99.3 8.9E-10 1.9E-14 87.2 17.5 104 2-105 65-168 (297)
147 PF13432 TPR_16: Tetratricopep 99.3 2.2E-11 4.8E-16 81.3 7.4 64 7-70 2-65 (65)
148 cd00189 TPR Tetratricopeptide 99.3 9.1E-11 2E-15 86.4 11.6 99 391-489 2-100 (100)
149 PF14938 SNAP: Soluble NSF att 99.3 7.7E-10 1.7E-14 98.1 19.3 202 265-506 30-247 (282)
150 COG4235 Cytochrome c biogenesi 99.3 3.8E-10 8.3E-15 95.2 16.1 127 52-321 138-264 (287)
151 KOG4340 Uncharacterized conser 99.3 4.4E-09 9.5E-14 87.6 21.9 296 46-479 20-332 (459)
152 PF09976 TPR_21: Tetratricopep 99.2 7.8E-10 1.7E-14 87.4 16.3 132 345-484 8-145 (145)
153 PRK02603 photosystem I assembl 99.2 1.6E-10 3.5E-15 94.4 12.5 102 2-103 35-153 (172)
154 KOG2053 Mitochondrial inherita 99.2 1.7E-06 3.7E-11 83.4 40.3 239 10-317 17-259 (932)
155 CHL00033 ycf3 photosystem I as 99.2 5.2E-10 1.1E-14 91.2 14.9 104 388-491 34-154 (168)
156 COG4105 ComL DNA uptake lipopr 99.2 8.9E-09 1.9E-13 85.1 21.7 187 2-317 34-237 (254)
157 PF13432 TPR_16: Tetratricopep 99.2 6E-11 1.3E-15 79.2 7.2 64 428-491 2-65 (65)
158 PF12895 Apc3: Anaphase-promot 99.2 3.5E-11 7.7E-16 84.9 6.3 81 402-483 2-84 (84)
159 PF14938 SNAP: Soluble NSF att 99.2 1E-09 2.2E-14 97.4 16.6 223 247-495 32-275 (282)
160 PRK10803 tol-pal system protei 99.2 3.9E-10 8.4E-15 97.1 12.9 107 3-109 143-256 (263)
161 KOG1941 Acetylcholine receptor 99.2 1.1E-08 2.4E-13 87.6 20.9 318 3-485 7-359 (518)
162 PRK10803 tol-pal system protei 99.2 1.4E-09 3.1E-14 93.7 15.1 110 388-497 141-257 (263)
163 KOG4234 TPR repeat-containing 99.2 4E-10 8.7E-15 87.9 10.3 116 392-507 98-218 (271)
164 CHL00033 ycf3 photosystem I as 99.1 5.7E-09 1.2E-13 85.0 16.7 107 247-357 32-141 (168)
165 COG4785 NlpI Lipoprotein NlpI, 99.1 7.1E-09 1.5E-13 82.2 16.1 202 246-489 61-269 (297)
166 PF09976 TPR_21: Tetratricopep 99.1 7.2E-09 1.6E-13 81.9 16.4 133 249-416 10-145 (145)
167 PF13512 TPR_18: Tetratricopep 99.1 1.8E-09 4E-14 81.1 11.6 105 2-106 10-135 (142)
168 PF14559 TPR_19: Tetratricopep 99.1 3.6E-10 7.8E-15 76.3 6.2 66 13-78 2-67 (68)
169 PRK11906 transcriptional regul 99.1 4.4E-09 9.4E-14 94.7 14.5 111 383-493 289-408 (458)
170 PRK10153 DNA-binding transcrip 99.0 4.7E-09 1E-13 99.9 14.7 121 371-492 358-488 (517)
171 KOG3081 Vesicle coat complex C 99.0 6.8E-07 1.5E-11 73.8 24.8 195 256-494 78-279 (299)
172 COG1729 Uncharacterized protei 99.0 4.7E-09 1E-13 87.7 12.7 107 3-109 142-254 (262)
173 KOG1070 rRNA processing protei 99.0 1.8E-07 3.9E-12 93.8 24.6 221 268-495 1442-1672(1710)
174 COG0457 NrfG FOG: TPR repeat [ 99.0 3.8E-06 8.2E-11 74.1 32.0 169 252-455 97-268 (291)
175 PRK11906 transcriptional regul 99.0 5.4E-08 1.2E-12 87.8 18.8 170 288-485 259-435 (458)
176 PRK10153 DNA-binding transcrip 99.0 4.6E-08 1E-12 93.2 19.2 154 277-459 330-489 (517)
177 KOG1941 Acetylcholine receptor 99.0 1.8E-07 3.9E-12 80.4 20.4 252 251-507 7-302 (518)
178 PF14559 TPR_19: Tetratricopep 99.0 1.8E-09 3.9E-14 72.9 6.8 66 434-499 2-67 (68)
179 COG4105 ComL DNA uptake lipopr 99.0 3E-07 6.6E-12 76.2 20.9 184 249-445 33-226 (254)
180 KOG4642 Chaperone-dependent E3 99.0 9.4E-10 2E-14 88.4 5.8 99 1-99 9-107 (284)
181 PF13371 TPR_9: Tetratricopept 99.0 3.3E-09 7.2E-14 72.7 7.9 69 430-498 2-70 (73)
182 PF12688 TPR_5: Tetratrico pep 99.0 1.8E-08 3.9E-13 74.9 11.7 97 2-98 1-103 (120)
183 PF13371 TPR_9: Tetratricopept 99.0 3.6E-09 7.8E-14 72.5 7.5 69 9-77 2-70 (73)
184 KOG1070 rRNA processing protei 99.0 8.3E-07 1.8E-11 89.3 26.3 169 263-469 1510-1682(1710)
185 COG0457 NrfG FOG: TPR repeat [ 98.9 7E-07 1.5E-11 78.8 24.4 204 249-489 58-268 (291)
186 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 2.5E-08 5.4E-13 90.6 14.7 100 384-486 198-297 (395)
187 PF12688 TPR_5: Tetratrico pep 98.9 3.3E-08 7.1E-13 73.5 12.4 96 390-485 2-103 (120)
188 KOG2471 TPR repeat-containing 98.9 8.3E-07 1.8E-11 79.5 23.0 118 2-119 240-384 (696)
189 COG1729 Uncharacterized protei 98.9 4.2E-08 9.1E-13 82.1 14.1 106 392-497 144-255 (262)
190 PF13512 TPR_18: Tetratricopep 98.9 6.2E-08 1.3E-12 73.0 12.8 108 388-495 9-137 (142)
191 KOG3617 WD40 and TPR repeat-co 98.9 3E-06 6.5E-11 80.9 25.4 202 251-483 913-1171(1416)
192 COG3898 Uncharacterized membra 98.9 2.4E-05 5.2E-10 68.5 28.5 301 6-452 88-392 (531)
193 KOG4555 TPR repeat-containing 98.8 9.8E-08 2.1E-12 69.1 11.1 102 3-104 44-149 (175)
194 KOG0376 Serine-threonine phosp 98.8 8.1E-09 1.8E-13 92.4 6.8 119 1-119 3-121 (476)
195 COG4700 Uncharacterized protei 98.8 1.9E-06 4E-11 67.1 18.5 156 291-484 63-220 (251)
196 KOG2053 Mitochondrial inherita 98.8 2.2E-05 4.8E-10 76.0 29.7 292 47-486 20-337 (932)
197 PF06552 TOM20_plant: Plant sp 98.8 6.1E-08 1.3E-12 75.3 10.0 96 18-113 7-123 (186)
198 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 2.1E-07 4.5E-12 84.7 15.0 124 286-449 171-294 (395)
199 KOG4555 TPR repeat-containing 98.8 1.2E-06 2.6E-11 63.6 14.8 105 249-360 42-146 (175)
200 KOG0551 Hsp90 co-chaperone CNS 98.7 6.3E-08 1.4E-12 82.2 9.0 104 2-105 81-188 (390)
201 COG3898 Uncharacterized membra 98.7 0.00013 2.9E-09 64.0 29.0 290 41-486 89-392 (531)
202 KOG1586 Protein required for f 98.7 1.8E-05 3.9E-10 64.2 22.0 186 247-458 31-230 (288)
203 KOG0545 Aryl-hydrocarbon recep 98.7 1.2E-07 2.5E-12 76.9 9.8 104 3-106 179-300 (329)
204 KOG2471 TPR repeat-containing 98.7 6E-06 1.3E-10 74.2 21.2 91 8-98 212-311 (696)
205 COG4700 Uncharacterized protei 98.7 7.6E-06 1.6E-10 63.8 19.0 159 9-313 63-222 (251)
206 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 6.9E-08 1.5E-12 87.0 9.2 69 384-452 70-141 (453)
207 PF06552 TOM20_plant: Plant sp 98.7 1.9E-07 4.2E-12 72.6 9.9 95 406-500 8-123 (186)
208 KOG1914 mRNA cleavage and poly 98.7 0.00026 5.6E-09 65.0 31.2 84 26-111 10-93 (656)
209 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 7.1E-08 1.5E-12 86.9 8.2 70 31-100 70-142 (453)
210 PF13424 TPR_12: Tetratricopep 98.7 2.2E-08 4.7E-13 69.6 3.5 64 423-486 5-75 (78)
211 KOG4507 Uncharacterized conser 98.6 7E-06 1.5E-10 75.4 19.7 107 396-502 614-721 (886)
212 KOG2300 Uncharacterized conser 98.6 0.00042 9.2E-09 62.7 34.6 103 2-104 7-123 (629)
213 KOG1586 Protein required for f 98.6 7.7E-06 1.7E-10 66.2 16.3 203 263-505 27-245 (288)
214 KOG4642 Chaperone-dependent E3 98.6 3.4E-07 7.4E-12 74.1 8.8 94 393-486 14-107 (284)
215 KOG2796 Uncharacterized conser 98.6 2.1E-05 4.6E-10 65.0 19.0 213 248-490 67-319 (366)
216 KOG3617 WD40 and TPR repeat-co 98.6 8E-05 1.7E-09 71.6 25.3 177 326-511 913-1165(1416)
217 PF13424 TPR_12: Tetratricopep 98.6 2.9E-07 6.2E-12 63.9 7.2 74 281-358 2-75 (78)
218 KOG0376 Serine-threonine phosp 98.5 3.2E-07 6.9E-12 82.5 7.1 113 394-506 9-121 (476)
219 KOG2796 Uncharacterized conser 98.5 1.6E-05 3.5E-10 65.7 16.0 143 37-319 178-321 (366)
220 KOG0545 Aryl-hydrocarbon recep 98.4 5.5E-06 1.2E-10 67.5 12.3 107 389-495 178-302 (329)
221 KOG1585 Protein required for f 98.4 4.8E-05 1E-09 62.2 17.3 172 289-486 36-219 (308)
222 PF13428 TPR_14: Tetratricopep 98.4 7E-07 1.5E-11 53.5 4.8 42 458-499 2-43 (44)
223 PF13428 TPR_14: Tetratricopep 98.4 5.9E-07 1.3E-11 53.8 4.4 40 38-77 3-42 (44)
224 PF07079 DUF1347: Protein of u 98.4 0.0018 4E-08 58.4 37.2 95 5-99 9-108 (549)
225 KOG1308 Hsp70-interacting prot 98.4 2.3E-07 5E-12 79.4 2.6 101 2-102 114-214 (377)
226 KOG2300 Uncharacterized conser 98.3 0.0026 5.6E-08 57.9 31.6 418 5-506 49-540 (629)
227 KOG1258 mRNA processing protei 98.3 0.0038 8.3E-08 58.7 34.5 408 19-505 62-489 (577)
228 PF04184 ST7: ST7 protein; In 98.3 0.00049 1.1E-08 62.9 21.8 159 250-433 259-429 (539)
229 PF13431 TPR_17: Tetratricopep 98.2 1.1E-06 2.4E-11 48.7 3.0 32 446-477 2-33 (34)
230 PF05843 Suf: Suppressor of fo 98.2 7.1E-05 1.5E-09 66.3 16.0 112 384-495 30-145 (280)
231 PF04184 ST7: ST7 protein; In 98.2 0.00016 3.4E-09 66.0 17.8 191 289-499 173-388 (539)
232 PF13431 TPR_17: Tetratricopep 98.2 9.2E-07 2E-11 49.1 2.1 32 25-56 2-33 (34)
233 PF10300 DUF3808: Protein of u 98.2 0.0021 4.6E-08 61.4 26.0 116 371-486 249-376 (468)
234 KOG1585 Protein required for f 98.2 0.0015 3.2E-08 53.8 20.2 128 294-447 120-251 (308)
235 KOG1550 Extracellular protein 98.2 0.0015 3.2E-08 64.1 24.5 105 5-113 247-369 (552)
236 PF00515 TPR_1: Tetratricopept 98.1 3.7E-06 8.1E-11 47.1 3.9 32 458-489 2-33 (34)
237 KOG0551 Hsp90 co-chaperone CNS 98.1 3.1E-05 6.6E-10 66.4 10.7 107 388-494 80-190 (390)
238 KOG1258 mRNA processing protei 98.1 0.0082 1.8E-07 56.6 27.6 63 52-114 61-123 (577)
239 PF07719 TPR_2: Tetratricopept 98.1 6.8E-06 1.5E-10 46.1 4.5 33 458-490 2-34 (34)
240 PF00515 TPR_1: Tetratricopept 98.1 6.2E-06 1.3E-10 46.2 3.8 32 3-34 2-33 (34)
241 KOG1308 Hsp70-interacting prot 98.0 5.2E-06 1.1E-10 71.3 3.8 93 397-489 122-214 (377)
242 KOG1550 Extracellular protein 98.0 0.0034 7.3E-08 61.6 23.7 82 17-100 227-323 (552)
243 KOG2610 Uncharacterized conser 98.0 0.00068 1.5E-08 58.5 16.2 164 253-450 106-274 (491)
244 PF07719 TPR_2: Tetratricopept 98.0 1.1E-05 2.5E-10 45.2 3.7 31 38-68 3-33 (34)
245 KOG2610 Uncharacterized conser 98.0 0.00062 1.4E-08 58.7 15.5 162 287-484 106-274 (491)
246 PF02259 FAT: FAT domain; Int 98.0 0.014 3E-07 54.4 26.5 139 325-489 146-341 (352)
247 KOG3616 Selective LIM binding 98.0 0.005 1.1E-07 59.1 22.5 215 253-490 768-1028(1636)
248 KOG0985 Vesicle coat protein c 97.9 0.007 1.5E-07 60.3 23.8 50 254-311 1198-1247(1666)
249 COG2976 Uncharacterized protei 97.9 0.0014 3E-08 52.2 15.7 137 345-490 50-192 (207)
250 KOG3616 Selective LIM binding 97.9 0.0095 2.1E-07 57.3 23.8 167 331-512 712-903 (1636)
251 PF03704 BTAD: Bacterial trans 97.9 0.00022 4.8E-09 56.5 11.7 95 4-98 8-124 (146)
252 PF13281 DUF4071: Domain of un 97.9 0.0051 1.1E-07 55.6 20.7 80 249-335 140-227 (374)
253 PF02259 FAT: FAT domain; Int 97.9 0.021 4.6E-07 53.1 29.2 66 247-312 143-212 (352)
254 KOG2396 HAT (Half-A-TPR) repea 97.9 0.02 4.4E-07 52.7 33.4 95 20-114 89-184 (568)
255 PF13281 DUF4071: Domain of un 97.9 0.014 3.1E-07 52.8 23.0 177 283-493 140-341 (374)
256 PF05843 Suf: Suppressor of fo 97.9 0.0013 2.8E-08 58.3 16.6 139 252-424 3-142 (280)
257 PF10345 Cohesin_load: Cohesin 97.8 0.045 9.8E-07 54.8 30.1 84 18-102 37-131 (608)
258 KOG2041 WD40 repeat protein [G 97.8 0.034 7.3E-07 53.4 25.1 143 248-415 794-936 (1189)
259 COG3118 Thioredoxin domain-con 97.8 0.00087 1.9E-08 57.2 13.5 116 4-119 136-287 (304)
260 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.029 6.2E-07 51.0 29.6 93 24-117 30-122 (660)
261 KOG0890 Protein kinase of the 97.7 0.11 2.4E-06 57.4 30.3 160 299-490 1644-1837(2382)
262 PF03704 BTAD: Bacterial trans 97.7 0.00095 2E-08 52.9 12.1 90 396-485 13-124 (146)
263 PF13181 TPR_8: Tetratricopept 97.7 5.9E-05 1.3E-09 42.2 3.7 32 458-489 2-33 (34)
264 COG2976 Uncharacterized protei 97.7 0.011 2.4E-07 47.3 17.1 60 393-453 130-189 (207)
265 COG3118 Thioredoxin domain-con 97.7 0.0085 1.8E-07 51.4 17.3 135 249-420 133-267 (304)
266 PF10300 DUF3808: Protein of u 97.6 0.0045 9.7E-08 59.3 17.4 123 263-418 246-376 (468)
267 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00051 1.1E-08 42.3 6.7 49 458-506 2-50 (53)
268 KOG1914 mRNA cleavage and poly 97.5 0.076 1.6E-06 49.6 36.5 430 4-489 22-504 (656)
269 PF13181 TPR_8: Tetratricopept 97.5 0.00013 2.8E-09 40.7 3.3 30 38-67 3-32 (34)
270 PF04781 DUF627: Protein of un 97.5 0.0017 3.6E-08 46.6 9.5 92 8-99 2-107 (111)
271 KOG0530 Protein farnesyltransf 97.5 0.046 1E-06 46.0 20.9 81 266-357 94-175 (318)
272 KOG0530 Protein farnesyltransf 97.4 0.047 1E-06 45.9 18.1 208 257-501 50-269 (318)
273 PF13174 TPR_6: Tetratricopept 97.4 0.00033 7.1E-09 38.7 3.8 32 459-490 2-33 (33)
274 PF04910 Tcf25: Transcriptiona 97.4 0.0088 1.9E-07 54.9 14.8 170 276-490 32-226 (360)
275 PF10345 Cohesin_load: Cohesin 97.3 0.23 5E-06 49.9 33.7 216 263-481 152-428 (608)
276 KOG3824 Huntingtin interacting 97.3 0.001 2.2E-08 56.7 7.1 75 39-113 119-193 (472)
277 KOG0985 Vesicle coat protein c 97.3 0.28 6E-06 49.8 27.9 218 248-504 1102-1326(1666)
278 KOG4507 Uncharacterized conser 97.2 0.0011 2.3E-08 61.7 7.5 109 8-116 613-722 (886)
279 PF13174 TPR_6: Tetratricopept 97.2 0.00061 1.3E-08 37.6 3.9 31 72-102 2-32 (33)
280 KOG3824 Huntingtin interacting 97.2 0.0017 3.7E-08 55.4 7.7 74 393-466 120-193 (472)
281 PRK10941 hypothetical protein; 97.2 0.0041 8.8E-08 54.0 10.3 76 424-499 182-257 (269)
282 KOG2396 HAT (Half-A-TPR) repea 97.2 0.0056 1.2E-07 56.2 11.4 87 410-496 92-179 (568)
283 COG2909 MalT ATP-dependent tra 97.2 0.3 6.4E-06 48.9 26.1 213 249-487 414-648 (894)
284 COG0790 FOG: TPR repeat, SEL1 97.2 0.092 2E-06 47.3 19.6 168 296-505 53-236 (292)
285 PF08631 SPO22: Meiosis protei 97.2 0.15 3.3E-06 45.3 20.7 172 294-485 3-185 (278)
286 PF14561 TPR_20: Tetratricopep 97.2 0.0045 9.7E-08 43.6 8.3 75 21-95 7-83 (90)
287 PF08424 NRDE-2: NRDE-2, neces 97.1 0.021 4.6E-07 51.8 14.9 94 23-116 6-111 (321)
288 KOG2041 WD40 repeat protein [G 97.1 0.28 6.1E-06 47.5 22.1 191 262-483 746-936 (1189)
289 COG0790 FOG: TPR repeat, SEL1 97.1 0.19 4.1E-06 45.3 24.2 193 259-492 50-272 (292)
290 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0023 5.1E-08 39.4 5.8 39 38-76 3-41 (53)
291 PF08631 SPO22: Meiosis protei 97.1 0.18 4E-06 44.8 23.9 67 249-315 83-152 (278)
292 PF09613 HrpB1_HrpK: Bacterial 97.1 0.007 1.5E-07 47.1 9.6 85 3-87 11-95 (160)
293 PF13176 TPR_7: Tetratricopept 97.1 0.00083 1.8E-08 37.9 3.3 25 460-484 2-26 (36)
294 KOG1310 WD40 repeat protein [G 97.1 0.0023 5E-08 58.9 7.7 103 3-105 375-480 (758)
295 COG2909 MalT ATP-dependent tra 97.0 0.42 9E-06 47.9 29.9 208 251-483 459-685 (894)
296 PF14561 TPR_20: Tetratricopep 97.0 0.0076 1.6E-07 42.4 8.2 64 443-506 8-73 (90)
297 PRK10941 hypothetical protein; 97.0 0.0055 1.2E-07 53.2 9.1 79 37-115 182-260 (269)
298 PF12968 DUF3856: Domain of Un 96.9 0.019 4.2E-07 41.5 9.8 94 6-99 13-129 (144)
299 KOG3783 Uncharacterized conser 96.9 0.36 7.8E-06 45.5 22.3 67 424-490 450-524 (546)
300 PF13176 TPR_7: Tetratricopept 96.9 0.0016 3.5E-08 36.7 3.5 25 426-450 2-26 (36)
301 PF09613 HrpB1_HrpK: Bacterial 96.9 0.022 4.7E-07 44.5 10.6 115 388-504 9-123 (160)
302 PF08424 NRDE-2: NRDE-2, neces 96.9 0.12 2.6E-06 47.0 17.3 109 380-488 56-185 (321)
303 KOG3364 Membrane protein invol 96.9 0.041 8.9E-07 41.1 11.3 85 422-506 31-120 (149)
304 PF12968 DUF3856: Domain of Un 96.9 0.078 1.7E-06 38.5 12.2 109 324-451 6-128 (144)
305 KOG0890 Protein kinase of the 96.8 1.2 2.6E-05 49.9 31.2 119 385-505 1666-1803(2382)
306 PF04781 DUF627: Protein of un 96.8 0.052 1.1E-06 39.2 11.0 47 290-340 2-48 (111)
307 smart00028 TPR Tetratricopepti 96.8 0.0029 6.3E-08 34.5 4.0 32 458-489 2-33 (34)
308 PF04910 Tcf25: Transcriptiona 96.7 0.093 2E-06 48.3 15.4 85 29-113 33-147 (360)
309 KOG3783 Uncharacterized conser 96.7 0.52 1.1E-05 44.5 19.8 260 19-317 250-524 (546)
310 KOG1464 COP9 signalosome, subu 96.7 0.32 7E-06 41.3 16.5 102 255-361 150-263 (440)
311 PF09986 DUF2225: Uncharacteri 96.6 0.069 1.5E-06 44.9 12.4 99 298-419 91-195 (214)
312 smart00028 TPR Tetratricopepti 96.5 0.005 1.1E-07 33.5 3.9 30 72-101 3-32 (34)
313 COG4649 Uncharacterized protei 96.5 0.28 6.1E-06 38.6 14.4 112 391-504 96-213 (221)
314 PF09986 DUF2225: Uncharacteri 96.5 0.042 9E-07 46.2 10.6 90 401-490 89-198 (214)
315 COG4976 Predicted methyltransf 96.4 0.0046 1E-07 50.5 4.4 61 45-105 4-64 (287)
316 PF10602 RPN7: 26S proteasome 96.4 0.16 3.5E-06 41.4 13.4 107 248-359 34-143 (177)
317 KOG1310 WD40 repeat protein [G 96.4 0.017 3.6E-07 53.5 8.3 103 390-492 375-480 (758)
318 PF07079 DUF1347: Protein of u 96.4 0.75 1.6E-05 42.4 34.6 73 432-505 471-544 (549)
319 KOG3364 Membrane protein invol 96.4 0.12 2.6E-06 38.7 11.0 83 35-117 31-118 (149)
320 COG3914 Spy Predicted O-linked 96.4 0.12 2.6E-06 49.0 13.6 123 384-506 60-191 (620)
321 COG4976 Predicted methyltransf 96.3 0.0067 1.5E-07 49.6 4.7 58 434-491 6-63 (287)
322 TIGR02561 HrpB1_HrpK type III 96.3 0.048 1E-06 41.7 8.8 84 4-87 12-95 (153)
323 PF15015 NYD-SP12_N: Spermatog 96.3 0.031 6.8E-07 50.2 8.9 92 5-96 179-288 (569)
324 PRK13184 pknD serine/threonine 96.2 2 4.3E-05 44.9 30.2 102 8-110 481-592 (932)
325 TIGR02561 HrpB1_HrpK type III 96.2 0.086 1.9E-06 40.4 9.5 85 389-473 10-94 (153)
326 KOG1464 COP9 signalosome, subu 96.2 0.41 8.9E-06 40.7 14.3 50 263-312 40-93 (440)
327 COG5191 Uncharacterized conser 96.1 0.013 2.9E-07 50.3 5.6 83 415-497 99-182 (435)
328 KOG4814 Uncharacterized conser 96.1 0.043 9.3E-07 52.2 9.3 96 4-99 356-457 (872)
329 COG5191 Uncharacterized conser 96.1 0.014 3.1E-07 50.1 5.7 91 25-115 96-187 (435)
330 KOG4814 Uncharacterized conser 96.0 1.4 3.1E-05 42.5 18.5 104 325-452 354-457 (872)
331 PF10579 Rapsyn_N: Rapsyn N-te 95.9 0.054 1.2E-06 36.2 6.6 61 3-63 7-70 (80)
332 PRK15180 Vi polysaccharide bio 95.9 0.052 1.1E-06 49.8 8.6 123 368-490 302-424 (831)
333 COG3914 Spy Predicted O-linked 95.9 0.61 1.3E-05 44.5 15.5 90 21-110 50-142 (620)
334 KOG1463 26S proteasome regulat 95.8 1.3 2.8E-05 39.3 23.9 178 253-454 131-318 (411)
335 PF10602 RPN7: 26S proteasome 95.8 0.15 3.3E-06 41.5 10.3 98 3-100 37-143 (177)
336 COG5159 RPN6 26S proteasome re 95.7 1.2 2.7E-05 38.3 22.4 105 253-361 128-238 (421)
337 COG4649 Uncharacterized protei 95.5 0.93 2E-05 35.9 15.9 57 258-314 66-124 (221)
338 KOG2422 Uncharacterized conser 95.3 1.1 2.4E-05 42.7 15.0 51 262-312 250-312 (665)
339 KOG0529 Protein geranylgeranyl 95.3 1.8 3.8E-05 39.6 15.6 123 381-503 101-241 (421)
340 KOG0529 Protein geranylgeranyl 95.2 0.93 2E-05 41.3 13.8 104 404-507 90-199 (421)
341 PF15015 NYD-SP12_N: Spermatog 95.1 0.2 4.4E-06 45.3 9.3 109 394-502 181-310 (569)
342 COG2912 Uncharacterized conser 95.0 0.19 4.1E-06 43.1 8.6 72 425-496 183-254 (269)
343 PF13374 TPR_10: Tetratricopep 94.9 0.053 1.2E-06 31.6 4.0 29 458-486 3-31 (42)
344 PF13374 TPR_10: Tetratricopep 94.8 0.046 1E-06 31.9 3.5 28 3-30 3-30 (42)
345 PRK13184 pknD serine/threonine 94.6 7 0.00015 41.1 24.5 90 265-361 534-623 (932)
346 COG2912 Uncharacterized conser 94.5 0.21 4.6E-06 42.8 7.8 77 37-113 182-258 (269)
347 KOG1839 Uncharacterized protei 94.5 0.49 1.1E-05 49.6 11.6 97 2-98 932-1043(1236)
348 KOG1839 Uncharacterized protei 94.4 0.48 1E-05 49.7 11.3 65 249-313 931-1002(1236)
349 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.095 2.1E-06 29.6 3.3 30 2-31 1-30 (38)
350 COG4941 Predicted RNA polymera 94.0 4.2 9E-05 36.2 14.8 189 266-499 212-407 (415)
351 KOG0546 HSP90 co-chaperone CPR 94.0 0.11 2.3E-06 46.0 5.0 114 5-118 225-357 (372)
352 KOG0546 HSP90 co-chaperone CPR 93.9 0.13 2.9E-06 45.4 5.5 84 424-507 276-359 (372)
353 PF07720 TPR_3: Tetratricopept 93.9 0.21 4.5E-06 27.9 4.4 32 458-489 2-35 (36)
354 PF04053 Coatomer_WDAD: Coatom 93.8 3.7 8E-05 39.2 15.3 158 259-483 270-428 (443)
355 PF10579 Rapsyn_N: Rapsyn N-te 93.7 1.2 2.6E-05 29.9 8.4 65 249-313 5-72 (80)
356 PRK15180 Vi polysaccharide bio 93.7 6.1 0.00013 37.0 27.8 95 11-105 298-392 (831)
357 PF07720 TPR_3: Tetratricopept 93.7 0.18 3.9E-06 28.2 3.9 32 3-34 2-35 (36)
358 COG3629 DnrI DNA-binding trans 93.7 1.9 4.1E-05 37.8 11.9 66 248-313 151-216 (280)
359 KOG1538 Uncharacterized conser 93.6 4.1 8.9E-05 39.6 14.8 57 253-310 588-658 (1081)
360 KOG2422 Uncharacterized conser 93.6 2.7 6E-05 40.2 13.5 142 247-420 281-450 (665)
361 PF04190 DUF410: Protein of un 93.6 4.7 0.0001 35.4 19.9 122 385-506 86-243 (260)
362 PF07721 TPR_4: Tetratricopept 93.6 0.12 2.5E-06 26.4 2.8 23 459-481 3-25 (26)
363 PF10516 SHNi-TPR: SHNi-TPR; 93.3 0.16 3.5E-06 28.7 3.3 29 458-486 2-30 (38)
364 PF12862 Apc5: Anaphase-promot 93.3 0.49 1.1E-05 33.8 6.7 54 12-65 8-70 (94)
365 KOG2581 26S proteasome regulat 93.1 5.5 0.00012 36.4 14.0 33 389-421 247-279 (493)
366 PF07721 TPR_4: Tetratricopept 93.1 0.15 3.3E-06 26.0 2.8 13 77-89 8-20 (26)
367 COG3629 DnrI DNA-binding trans 93.0 0.43 9.4E-06 41.6 7.1 64 36-99 153-216 (280)
368 KOG3807 Predicted membrane pro 92.7 6.9 0.00015 34.7 18.6 56 256-313 190-245 (556)
369 COG1747 Uncharacterized N-term 92.6 9.5 0.00021 36.2 21.0 94 251-358 67-160 (711)
370 KOG4151 Myosin assembly protei 92.5 0.61 1.3E-05 46.1 8.2 115 3-117 54-174 (748)
371 KOG1538 Uncharacterized conser 92.2 13 0.00027 36.6 16.5 80 11-96 565-658 (1081)
372 PF10373 EST1_DNA_bind: Est1 D 92.1 0.72 1.6E-05 41.2 7.9 62 408-469 1-62 (278)
373 PF14863 Alkyl_sulf_dimr: Alky 91.9 0.43 9.4E-06 36.8 5.2 50 36-85 70-119 (141)
374 PF12862 Apc5: Anaphase-promot 91.8 1.2 2.7E-05 31.7 7.2 62 294-359 8-71 (94)
375 KOG0128 RNA-binding protein SA 91.5 17 0.00038 36.8 24.6 63 50-112 93-155 (881)
376 PF11207 DUF2989: Protein of u 91.5 7 0.00015 32.2 16.1 72 405-477 122-198 (203)
377 KOG2581 26S proteasome regulat 91.0 13 0.00027 34.3 20.0 59 253-311 129-196 (493)
378 PF10373 EST1_DNA_bind: Est1 D 90.5 1.1 2.3E-05 40.1 7.3 62 374-435 1-62 (278)
379 COG3947 Response regulator con 90.3 1.1 2.3E-05 38.9 6.4 61 37-97 280-340 (361)
380 PRK11619 lytic murein transgly 90.1 23 0.00051 35.9 36.5 183 291-483 248-465 (644)
381 KOG0128 RNA-binding protein SA 90.0 24 0.00052 35.9 28.1 436 16-483 93-560 (881)
382 COG3947 Response regulator con 90.0 1.1 2.3E-05 38.9 6.1 49 71-119 280-328 (361)
383 TIGR03504 FimV_Cterm FimV C-te 89.9 1.8 3.9E-05 25.5 5.3 24 461-484 3-26 (44)
384 cd02682 MIT_AAA_Arch MIT: doma 89.1 1.6 3.4E-05 29.3 5.2 29 2-30 6-34 (75)
385 smart00386 HAT HAT (Half-A-TPR 88.9 0.93 2E-05 24.2 3.7 27 17-43 2-28 (33)
386 PF00244 14-3-3: 14-3-3 protei 88.7 15 0.00032 31.7 14.4 47 267-313 143-198 (236)
387 PF14863 Alkyl_sulf_dimr: Alky 88.7 2.3 5.1E-05 32.9 6.8 53 457-509 70-122 (141)
388 PF12739 TRAPPC-Trs85: ER-Golg 88.4 24 0.00051 33.7 17.0 94 388-488 299-401 (414)
389 smart00386 HAT HAT (Half-A-TPR 88.3 1.3 2.8E-05 23.6 4.1 29 471-499 1-29 (33)
390 smart00299 CLH Clathrin heavy 88.3 10 0.00022 29.4 12.1 49 259-308 16-64 (140)
391 PF11817 Foie-gras_1: Foie gra 88.2 17 0.00036 31.7 15.5 78 406-483 155-244 (247)
392 KOG4014 Uncharacterized conser 88.1 12 0.00027 30.1 13.4 159 326-503 35-212 (248)
393 PF11207 DUF2989: Protein of u 88.0 14 0.0003 30.6 14.8 72 372-444 123-199 (203)
394 COG5159 RPN6 26S proteasome re 88.0 17 0.00038 31.7 21.0 181 286-494 127-322 (421)
395 COG5107 RNA14 Pre-mRNA 3'-end 87.9 24 0.00052 33.1 36.3 235 242-491 294-536 (660)
396 PF04053 Coatomer_WDAD: Coatom 87.8 26 0.00057 33.6 17.2 47 10-58 269-317 (443)
397 KOG1463 26S proteasome regulat 87.4 21 0.00046 32.0 23.2 187 300-491 104-321 (411)
398 KOG2114 Vacuolar assembly/sort 86.8 34 0.00074 34.9 14.7 107 292-409 342-451 (933)
399 PF04190 DUF410: Protein of un 86.4 22 0.00048 31.2 16.5 211 247-472 7-243 (260)
400 TIGR03504 FimV_Cterm FimV C-te 86.1 1.9 4.1E-05 25.4 3.9 25 288-312 3-27 (44)
401 COG4455 ImpE Protein of avirul 86.0 5.6 0.00012 33.1 7.7 60 45-104 10-69 (273)
402 KOG4151 Myosin assembly protei 85.3 4.7 0.0001 40.3 8.3 110 395-504 59-174 (748)
403 COG4455 ImpE Protein of avirul 85.3 7.3 0.00016 32.5 8.0 64 257-320 8-71 (273)
404 PF10255 Paf67: RNA polymerase 84.2 2.1 4.5E-05 39.8 5.2 98 391-489 124-231 (404)
405 PF09670 Cas_Cas02710: CRISPR- 84.0 38 0.00082 31.8 14.0 23 257-279 248-270 (379)
406 PF10255 Paf67: RNA polymerase 84.0 3 6.4E-05 38.8 6.1 61 37-98 123-192 (404)
407 PF12854 PPR_1: PPR repeat 83.9 3 6.5E-05 22.8 3.9 25 423-447 7-31 (34)
408 KOG3807 Predicted membrane pro 83.8 32 0.00069 30.8 15.8 144 285-448 185-336 (556)
409 PF12854 PPR_1: PPR repeat 82.1 4.6 9.9E-05 22.1 4.2 27 283-309 6-32 (34)
410 KOG0686 COP9 signalosome, subu 81.5 22 0.00047 32.9 10.1 110 390-499 151-279 (466)
411 COG5536 BET4 Protein prenyltra 80.9 38 0.00081 29.6 11.2 123 381-503 100-239 (328)
412 KOG0276 Vesicle coat complex C 80.3 30 0.00066 33.8 11.1 66 347-417 625-694 (794)
413 PF11817 Foie-gras_1: Foie gra 80.1 5.9 0.00013 34.5 6.3 63 35-97 177-245 (247)
414 KOG2063 Vacuolar assembly/sort 79.7 85 0.0019 33.0 16.3 94 260-357 601-712 (877)
415 cd02682 MIT_AAA_Arch MIT: doma 79.4 16 0.00035 24.6 6.8 30 249-278 5-34 (75)
416 PF07219 HemY_N: HemY protein 79.4 8.9 0.00019 28.2 6.2 45 5-49 62-106 (108)
417 cd02683 MIT_1 MIT: domain cont 78.7 15 0.00032 25.0 6.6 28 3-30 7-34 (77)
418 PF09670 Cas_Cas02710: CRISPR- 78.5 60 0.0013 30.5 13.7 63 251-313 132-198 (379)
419 PF13041 PPR_2: PPR repeat fam 78.3 12 0.00025 22.7 5.6 26 38-63 5-30 (50)
420 PHA02537 M terminase endonucle 77.7 5.7 0.00012 33.7 5.2 107 398-505 92-225 (230)
421 COG4941 Predicted RNA polymera 77.6 17 0.00037 32.6 8.1 95 17-112 311-407 (415)
422 KOG2561 Adaptor protein NUB1, 77.6 10 0.00022 35.2 6.9 98 1-98 162-295 (568)
423 PF11846 DUF3366: Domain of un 77.5 9.4 0.0002 31.8 6.6 44 444-488 132-175 (193)
424 PF13041 PPR_2: PPR repeat fam 77.2 13 0.00029 22.4 5.9 26 425-450 5-30 (50)
425 KOG0686 COP9 signalosome, subu 76.4 23 0.00049 32.8 8.7 94 4-97 152-256 (466)
426 cd02681 MIT_calpain7_1 MIT: do 76.3 4.9 0.00011 27.2 3.6 28 3-30 7-34 (76)
427 COG5536 BET4 Protein prenyltra 75.6 40 0.00087 29.5 9.5 128 379-506 56-199 (328)
428 PF04212 MIT: MIT (microtubule 74.5 6.1 0.00013 26.1 3.8 27 4-30 7-33 (69)
429 PF00244 14-3-3: 14-3-3 protei 74.2 58 0.0012 28.2 17.4 62 253-314 4-67 (236)
430 PF04097 Nic96: Nup93/Nic96; 74.1 1.1E+02 0.0023 31.2 18.7 43 249-312 413-455 (613)
431 KOG0889 Histone acetyltransfer 73.8 2.3E+02 0.0051 35.0 27.7 86 423-509 2812-2905(3550)
432 PF01535 PPR: PPR repeat; Int 72.9 6 0.00013 20.6 2.9 17 431-447 8-24 (31)
433 KOG2561 Adaptor protein NUB1, 72.5 68 0.0015 30.1 10.7 114 320-452 158-296 (568)
434 PF09205 DUF1955: Domain of un 72.4 37 0.00081 25.9 7.6 55 258-312 94-148 (161)
435 PF08311 Mad3_BUB1_I: Mad3/BUB 71.1 44 0.00095 25.5 10.3 44 407-450 81-126 (126)
436 PF13226 DUF4034: Domain of un 70.9 51 0.0011 29.2 9.5 113 8-120 6-149 (277)
437 PF10952 DUF2753: Protein of u 70.8 19 0.00041 26.9 5.7 60 3-62 2-76 (140)
438 PHA02537 M terminase endonucle 69.7 11 0.00024 32.0 5.1 92 12-103 93-211 (230)
439 PF12739 TRAPPC-Trs85: ER-Golg 68.6 96 0.0021 29.7 11.7 30 252-281 210-239 (414)
440 KOG0276 Vesicle coat complex C 68.5 68 0.0015 31.6 10.2 50 292-357 645-694 (794)
441 KOG1920 IkappaB kinase complex 68.0 1.9E+02 0.004 31.5 17.7 158 262-449 892-1052(1265)
442 PF02064 MAS20: MAS20 protein 67.8 13 0.00029 27.8 4.6 37 461-497 67-103 (121)
443 PF04840 Vps16_C: Vps16, C-ter 67.7 99 0.0021 28.3 19.3 77 389-479 208-284 (319)
444 smart00299 CLH Clathrin heavy 67.7 55 0.0012 25.3 13.7 113 370-501 22-135 (140)
445 PF13226 DUF4034: Domain of un 67.7 89 0.0019 27.7 10.3 33 473-505 115-147 (277)
446 PF10952 DUF2753: Protein of u 67.5 25 0.00054 26.3 5.7 64 427-490 5-87 (140)
447 PF07219 HemY_N: HemY protein 67.3 47 0.001 24.4 7.6 55 245-299 54-108 (108)
448 cd02680 MIT_calpain7_2 MIT: do 67.2 7.9 0.00017 26.1 3.0 24 6-29 10-33 (75)
449 KOG1497 COP9 signalosome, subu 67.2 47 0.001 29.7 8.2 67 285-356 104-171 (399)
450 KOG0567 HEAT repeat-containing 67.1 87 0.0019 27.3 17.0 204 258-484 57-260 (289)
451 PF11846 DUF3366: Domain of un 66.3 24 0.00051 29.4 6.5 49 405-454 127-175 (193)
452 TIGR00756 PPR pentatricopeptid 66.3 13 0.00029 19.7 3.6 25 426-450 3-27 (35)
453 PF01239 PPTA: Protein prenylt 65.6 18 0.0004 19.1 4.1 28 477-504 3-30 (31)
454 KOG0567 HEAT repeat-containing 65.4 94 0.002 27.1 15.4 94 249-357 168-261 (289)
455 KOG4521 Nuclear pore complex, 65.0 2.1E+02 0.0046 31.1 15.0 187 284-488 920-1134(1480)
456 cd02678 MIT_VPS4 MIT: domain c 64.9 12 0.00026 25.3 3.6 27 4-30 8-34 (75)
457 KOG4279 Serine/threonine prote 64.1 68 0.0015 32.5 9.6 187 283-498 200-407 (1226)
458 smart00745 MIT Microtubule Int 63.9 13 0.00027 25.3 3.7 23 6-28 12-34 (77)
459 KOG4279 Serine/threonine prote 63.7 1.3E+02 0.0028 30.7 11.3 113 6-120 205-336 (1226)
460 KOG4563 Cell cycle-regulated h 63.5 14 0.00031 33.4 4.7 55 3-57 42-104 (400)
461 PF05053 Menin: Menin; InterP 63.1 1.3E+02 0.0028 29.6 10.9 92 394-500 262-367 (618)
462 PF02184 HAT: HAT (Half-A-TPR) 63.1 16 0.00034 19.8 3.0 26 17-43 2-27 (32)
463 PF02064 MAS20: MAS20 protein 62.5 22 0.00047 26.7 4.9 28 41-68 68-95 (121)
464 cd02684 MIT_2 MIT: domain cont 61.4 14 0.00031 24.9 3.4 26 5-30 9-34 (75)
465 KOG4014 Uncharacterized conser 60.8 91 0.002 25.5 15.4 102 371-486 128-233 (248)
466 KOG2063 Vacuolar assembly/sort 60.5 2.3E+02 0.005 30.0 17.4 35 246-280 500-534 (877)
467 PF14929 TAF1_subA: TAF RNA Po 60.5 1.8E+02 0.004 28.9 14.0 156 345-506 300-470 (547)
468 PRK15490 Vi polysaccharide bio 60.3 77 0.0017 31.5 9.3 82 11-94 17-98 (578)
469 cd02656 MIT MIT: domain contai 59.9 17 0.00036 24.5 3.7 25 5-29 9-33 (75)
470 COG5187 RPN7 26S proteasome re 59.6 1.3E+02 0.0028 26.7 13.9 102 388-489 114-224 (412)
471 COG1747 Uncharacterized N-term 59.1 1.8E+02 0.0039 28.3 23.4 226 236-503 14-251 (711)
472 PF12753 Nro1: Nuclear pore co 59.0 18 0.0004 33.3 4.7 47 51-99 333-391 (404)
473 PF09797 NatB_MDM20: N-acetylt 58.6 62 0.0014 30.3 8.5 48 263-310 196-243 (365)
474 PF04212 MIT: MIT (microtubule 58.2 33 0.00071 22.6 4.8 24 253-276 8-31 (69)
475 KOG2758 Translation initiation 58.0 1.4E+02 0.0031 26.9 13.5 79 374-452 114-196 (432)
476 cd02677 MIT_SNX15 MIT: domain 58.0 15 0.00033 24.8 3.1 24 6-29 10-33 (75)
477 PF12753 Nro1: Nuclear pore co 57.6 30 0.00065 32.0 5.8 30 441-472 336-365 (404)
478 TIGR02710 CRISPR-associated pr 57.2 1.7E+02 0.0037 27.4 12.8 19 400-418 257-275 (380)
479 COG5187 RPN7 26S proteasome re 55.9 1.5E+02 0.0032 26.3 12.6 62 291-357 82-143 (412)
480 PRK15490 Vi polysaccharide bio 55.8 2E+02 0.0044 28.7 11.3 56 424-481 43-98 (578)
481 PF13812 PPR_3: Pentatricopept 55.7 30 0.00065 18.3 4.2 27 286-312 3-29 (34)
482 cd02679 MIT_spastin MIT: domai 55.2 27 0.00058 23.9 3.9 16 402-417 21-36 (79)
483 PF09797 NatB_MDM20: N-acetylt 54.9 67 0.0015 30.1 8.1 44 372-415 200-243 (365)
484 cd02681 MIT_calpain7_1 MIT: do 54.1 42 0.0009 22.8 4.7 27 252-278 8-34 (76)
485 cd00280 TRFH Telomeric Repeat 53.8 1.2E+02 0.0027 24.8 8.6 46 394-440 116-161 (200)
486 smart00671 SEL1 Sel1-like repe 52.4 37 0.00079 18.3 4.0 13 17-29 20-32 (36)
487 COG2015 Alkyl sulfatase and re 52.3 32 0.00069 32.6 5.1 47 4-50 454-500 (655)
488 PF09477 Type_III_YscG: Bacter 52.1 92 0.002 22.8 9.5 84 395-483 12-95 (116)
489 TIGR02710 CRISPR-associated pr 51.0 2.2E+02 0.0047 26.8 13.2 56 6-61 134-196 (380)
490 PF08238 Sel1: Sel1 repeat; I 50.9 39 0.00085 18.7 3.8 14 472-485 23-36 (39)
491 KOG0687 26S proteasome regulat 49.3 2.1E+02 0.0045 26.1 11.5 29 325-357 104-132 (393)
492 cd02679 MIT_spastin MIT: domai 48.4 29 0.00063 23.7 3.3 34 16-64 3-36 (79)
493 PF12583 TPPII_N: Tripeptidyl 48.2 61 0.0013 24.6 5.1 37 45-81 85-121 (139)
494 KOG0687 26S proteasome regulat 47.7 2.2E+02 0.0047 25.9 13.6 107 247-361 101-213 (393)
495 PF12583 TPPII_N: Tripeptidyl 47.2 1.2E+02 0.0026 23.1 6.4 49 247-295 73-121 (139)
496 KOG1920 IkappaB kinase complex 47.0 4.3E+02 0.0092 29.0 14.8 82 396-484 959-1053(1265)
497 TIGR00985 3a0801s04tom mitocho 45.5 46 0.001 26.1 4.4 32 462-493 95-127 (148)
498 PF04010 DUF357: Protein of un 45.3 27 0.00059 23.6 2.8 27 1-27 34-60 (75)
499 PF08311 Mad3_BUB1_I: Mad3/BUB 45.2 1.4E+02 0.0029 22.8 13.7 85 298-416 40-126 (126)
500 KOG2758 Translation initiation 45.1 2.4E+02 0.0052 25.6 21.8 83 268-357 113-195 (432)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-48 Score=347.18 Aligned_cols=385 Identities=21% Similarity=0.261 Sum_probs=284.1
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
+++|-+.|+.+-..|++++|+..|+.+++++|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 46666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
.+|+..+|..+|.++++..|...-+|..|+.++...|+. ..++.
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei------------------------------------~~aiq 239 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEI------------------------------------WLAIQ 239 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchH------------------------------------HHHHH
Confidence 777777777777777777777777777777776666654 34455
Q ss_pred HHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHH
Q 009799 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (525)
.+.+++..+|+...
T Consensus 240 ~y~eAvkldP~f~d------------------------------------------------------------------ 253 (966)
T KOG4626|consen 240 HYEEAVKLDPNFLD------------------------------------------------------------------ 253 (966)
T ss_pred HHHHhhcCCCcchH------------------------------------------------------------------
Confidence 55555555555544
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
+|+++|.+|...+.+++|+.+|.+++...|++..++.++|.+|..+|..+-|+.+|++++++.|..
T Consensus 254 ----------AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F---- 319 (966)
T KOG4626|consen 254 ----------AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF---- 319 (966)
T ss_pred ----------HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc----
Confidence 455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC--------hhHHHHhchHHHHHHHHHHHhhcCCCcHHHHH
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------PDTLKKLNEAEKAKKELEQQEIFDPKIADEER 393 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 393 (525)
..++.+++.++...|+ ..+|..+|++++...|. +.++...|.+++|...|.++++..|..+.+..
T Consensus 320 ---~~Ay~NlanALkd~G~----V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 320 ---PDAYNNLANALKDKGS----VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN 392 (966)
T ss_pred ---hHHHhHHHHHHHhccc----hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence 2333333333333333 55555555555555444 12334445555555555555559999999999
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 473 (525)
++|.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+.+|.+|+.++|..++++.+||.+|...|+.
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009799 474 DKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (525)
Q Consensus 474 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (525)
.+|+..|+.++++.|+.+++..++..++.-+..+..
T Consensus 473 ~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 473 PEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999999999999999999999988876544
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-48 Score=344.29 Aligned_cols=428 Identities=19% Similarity=0.204 Sum_probs=402.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+...++|...++.|+|.+|.+....+-..+|.+.+.+..++.++++..+++.....-..+++.+|...+++.++|.++..
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
.|+++.|+..|+.++++.|++.++|..++.++...|+. ..++..
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~------------------------------------~~a~~~ 172 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDL------------------------------------ELAVQC 172 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCC------------------------------------cccHHH
Confidence 99999999999999999999999999999999988776 567889
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
+...++.+|.........+.++.+.|.+.+.. .-..++
T Consensus 173 ~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~------------------------------------------~cYlkA 210 (966)
T KOG4626|consen 173 FFEALQLNPDLYCARSDLGNLLKAEGRLEEAK------------------------------------------ACYLKA 210 (966)
T ss_pred HHHHHhcCcchhhhhcchhHHHHhhcccchhH------------------------------------------HHHHHH
Confidence 99999999999888888888888888664333 566778
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
+...|..+.+|.++|.++..+|+...|+..|+++++++|+.+++++++|.+|...+.++.|+.+|.+++...|++
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~----- 285 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH----- 285 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc-----
Confidence 888889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC--------hhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHH
Q 009799 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------PDTLKKLNEAEKAKKELEQQEIFDPKIADEERE 394 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 394 (525)
+.++.++|.+|++.|. .+-|+..|+++++..|. ...+...|+..+|..+|.+++...|..+++.++
T Consensus 286 --A~a~gNla~iYyeqG~----ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 286 --AVAHGNLACIYYEQGL----LDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred --hhhccceEEEEecccc----HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 8899999999999999 99999999999999987 346677899999999999999999999999999
Q ss_pred hhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q 009799 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYD 474 (525)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 474 (525)
+|.++..+|.+++|...|.++++..|..+.++.++|.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 475 KALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 475 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
.|+++|.+|+.++|...+++.+|+.++...|+..+|...+++++.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999999888877766554
No 3
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-44 Score=314.08 Aligned_cols=473 Identities=56% Similarity=0.834 Sum_probs=423.4
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009799 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (525)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (525)
|++.+..+|+..+..|+|+.|+..|..+|.++|.+...+.++..+|..+|+|++|++.-.+.++++|+.+.+|..+|..+
T Consensus 1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHH
Q 009799 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (525)
.-+|+|++|+..|.+.++.+|+|.....+++.++... . .....+.+|.++..+..+|.....+.++.+
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~----------~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y----------AADQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H----------HhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 9999999999999999999999999999999988222 1 226778899999999999999999999999
Q ss_pred HHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHH
Q 009799 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (525)
...+..++.+|.++..+++..++....+.+.+........+.......... |+ .....+..+..-.
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~-------------p~-~~~~~~~~~~~d~ 214 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAE-------------PC-KQEHNGFPIIEDN 214 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCC-------------cc-cccCCCCCccchh
Confidence 999999999999999999999999999999877644322111111111111 11 0011111111122
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
.........+.....+|...+...++..|++.|..++.++ .+...+.+.+.+|+..|.+.+++..+.++++........
T Consensus 215 ~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad 293 (539)
T KOG0548|consen 215 TEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD 293 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH
Confidence 2223355677788899999999999999999999999999 999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
+..++.++.++|..+...++ ++.++.+|.+++.....++++..+...+++++......-.+|....-....|+.++
T Consensus 294 ~klIak~~~r~g~a~~k~~~----~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKRED----YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAF 369 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHh----HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 88899999999999999999 99999999999999999999999999999999999999999999888889999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 009799 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETY 480 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (525)
..|+|..|+..|.++|..+|+++..|.++|.||.++|.+..|+...+.+++++|+...+|+..|.++..+.+|+.|.+.|
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHh
Q 009799 481 QEGLKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 481 ~~a~~~~p~~~~~~~~l~~~~~~~ 504 (525)
+++++++|++.++...+.+|...+
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-38 Score=314.86 Aligned_cols=431 Identities=20% Similarity=0.249 Sum_probs=318.6
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
|..+..+|+.++..|+|++|+..|++++...|+ +..+.++|.||..+|++++|+..++++++++|++..+++.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456889999999999999999999999999996 7899999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHh-HHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLAD-AKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (525)
.+|++++|+..|..+...++.+......+.. .+. ..+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------------------------------------~~a~ 244 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK-----------------------------------------KFAE 244 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-----------------------------------------HHHH
Confidence 9999999999999888776655432211111 110 1122
Q ss_pred HHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhh-ccCCC-CCCCCCChhhhH
Q 009799 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEE-TRKPE-SEPEPEPMELTE 238 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~ 238 (525)
..+...+...|.+.......+.+...+...... ..........+......... ....+ .......+++..
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~ 316 (615)
T TIGR00990 245 SKAKEILETKPENLPSVTFVGNYLQSFRPKPRP--------AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARA 316 (615)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHccCCcch--------hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHH
Confidence 333344444554443333222222111000000 00000000000000000000 00000 000122344444
Q ss_pred HHHHHHH---hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccc
Q 009799 239 EEKEAKE---RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGR 315 (525)
Q Consensus 239 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 315 (525)
+...+.. .|..+.++..+|.++...|++++|+..|++++..+|.+...+..+|.++...|++++|+..|+++++.+|
T Consensus 317 ~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 396 (615)
T TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396 (615)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5555543 4778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHHhchHHHHHHHHHHHhhcCCC
Q 009799 316 ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPK 387 (525)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~ 387 (525)
++ ..++..+|.++...|+ +++|+..|++++...|.. .++...|++++|+..+++++...|.
T Consensus 397 ~~-------~~~~~~lg~~~~~~g~----~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 397 ED-------PDIYYHRAQLHFIKGE----FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred CC-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 88 5677778888888888 999999999999988863 3456678899999999999998999
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHH------HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCCHHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRT------YSNRAAC-YTKLGAMPEGLKDADKCIELDPTFSKGY 460 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~ 460 (525)
++.++..+|.++...|++++|+..|++++.+.|++... +...+.. +...|++++|+.++++++.++|++..++
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999999999999999999999999888864332 2233333 3446889999999999999999888888
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH
Q 009799 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQEL 493 (525)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 493 (525)
..+|.++..+|++++|+.+|++++++.+...+.
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 899999999999999999999999888876653
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-37 Score=325.90 Aligned_cols=454 Identities=19% Similarity=0.196 Sum_probs=342.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
.....+..+...|++++|+..+++.+...|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 44566777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCccccccc-Cc---hhhhhcccCCCcccccchHH
Q 009799 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFA-GP---EMWAKLTADPTTRSYLDQDD 159 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~ 159 (525)
|++++|+..|++++..+|++..++..++.++...|+..++.... ..... .+ ..... ...........+.+
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A 586 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWL-----EKAAELNPQEIEPALA-LAQYYLGKGQLKKA 586 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHH-----HHHHHhCccchhHHHH-HHHHHHHCCCHHHH
Confidence 88888888888888888888888888887777766542111000 00000 00 00000 00000000011233
Q ss_pred HHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHH
Q 009799 160 FRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEE 239 (525)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (525)
...+...+...|.+...+...+......+.+ ..++...
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------------------------------~~A~~~~ 624 (899)
T TIGR02917 587 LAILNEAADAAPDSPEAWLMLGRAQLAAGDL------------------------------------------NKAVSSF 624 (899)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH------------------------------------------HHHHHHH
Confidence 3344444444455444444443333332221 2333444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChh
Q 009799 240 EKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (525)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 319 (525)
.......|.....+..+|.++...|++++|+..|++++..+|++..++..++.++...|++++|+..++.+....|..
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 702 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA-- 702 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC--
Confidence 455555566666777777777777777777777777777777777777777777777777777777777777777665
Q ss_pred hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh-------HHHHhchHHHHHHHHHHHhhcCCCcHHHH
Q 009799 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD-------TLKKLNEAEKAKKELEQQEIFDPKIADEE 392 (525)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 392 (525)
...+..+|.++...++ +++|+..|++++...|... .+...|++++|...+++++...|+++.++
T Consensus 703 -----~~~~~~~~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 703 -----ALGFELEGDLYLRQKD----YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred -----hHHHHHHHHHHHHCCC----HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4455666777777777 9999999999999888754 45667999999999999999999999999
Q ss_pred HHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.++++++...|+++..+..+|.++...|+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHH
Q 009799 473 YDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEEL 517 (525)
Q Consensus 473 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 517 (525)
+++|+.+|+++++.+|.++.++..++.++...|+..+|...+++.
T Consensus 853 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887665544
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.6e-36 Score=314.51 Aligned_cols=461 Identities=18% Similarity=0.164 Sum_probs=364.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
..+..+|..+...|++++|+..|++++..+|....+...++.++...|++++|+..+++.+...|+++..+..+|.++..
T Consensus 398 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 477 (899)
T TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG 477 (899)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
.|++++|+..|+++++.+|++..++..++.++...|+. +.+...
T Consensus 478 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~------------------------------------~~A~~~ 521 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP------------------------------------DDAIQR 521 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH------------------------------------HHHHHH
Confidence 99999999999999999999999999999999888776 334444
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
+.+.+...|.+...+...+.+....+......... .......+........ ....-...+....++......
T Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-------~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWL-------EKAAELNPQEIEPALA-LAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHhCccchhHHHH-HHHHHHHCCCHHHHHHHHHHH
Confidence 44455555555444443333322221111000000 0000000000000000 000000001223444555555
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
....|.....+..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++...|++
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----- 668 (899)
T TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN----- 668 (899)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----
Confidence 556666777888888888888899999999988888888888888888888888899999999998888888887
Q ss_pred HHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHH
Q 009799 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPKIADEERE 394 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 394 (525)
..++..++.++...++ +++|+..++.+....|.. ..+...|++++|+..+.+++...|+. ..+..
T Consensus 669 --~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 741 (899)
T TIGR02917 669 --TEAQIGLAQLLLAAKR----TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIK 741 (899)
T ss_pred --HHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHH
Confidence 4455566666666666 889988888888777653 24567789999999999999988887 67788
Q ss_pred hhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q 009799 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYD 474 (525)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 474 (525)
++.++...|++++|+..++++++..|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+ .
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHh
Q 009799 475 KALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKER 520 (525)
Q Consensus 475 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 520 (525)
+|+.++++++.+.|+++..+..++.++...|+..+|...++++++.
T Consensus 821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 821 RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999998888877777653
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.6e-36 Score=313.79 Aligned_cols=419 Identities=16% Similarity=0.124 Sum_probs=353.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHH--------------H
Q 009799 7 AKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSK--------------G 72 (525)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 72 (525)
.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45899999999999999999999999999999999999999999999999999999999998653 1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcc
Q 009799 73 YSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTR 152 (525)
Q Consensus 73 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
...+|.++...|++++|+..|+++++.+|++..++..++.++...|+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~-------------------------------- 401 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY-------------------------------- 401 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH--------------------------------
Confidence 235588899999999999999999999999999999999999999887
Q ss_pred cccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCC
Q 009799 153 SYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (525)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (525)
+.+...+.+.+..+|.+...+...+.++.... .
T Consensus 402 ----~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~-~------------------------------------------ 434 (1157)
T PRK11447 402 ----AAAERYYQQALRMDPGNTNAVRGLANLYRQQS-P------------------------------------------ 434 (1157)
T ss_pred ----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-H------------------------------------------
Confidence 67888899999999998776655444432110 0
Q ss_pred ChhhhHHHHHH---------HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHH
Q 009799 233 PMELTEEEKEA---------KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEEC 303 (525)
Q Consensus 233 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A 303 (525)
.+++..+.... .........+..+|..+...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 00000000000 011122446778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC------------------hhHH
Q 009799 304 IKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN------------------PDTL 365 (525)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~ 365 (525)
+..+++++...|+++ ..++.++..+...++ +++|+..++++...... ...+
T Consensus 515 ~~~l~~al~~~P~~~-------~~~~a~al~l~~~~~----~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 515 DALMRRLAQQKPNDP-------EQVYAYGLYLSGSDR----DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHHHHHHcCCCCH-------HHHHHHHHHHHhCCC----HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999884 445555666666666 99999998876432211 2245
Q ss_pred HHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 009799 366 KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKD 445 (525)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 445 (525)
...|++++|+..++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..
T Consensus 584 ~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 584 RDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56788899988877 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 446 ADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ------ELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 446 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
++++++..|+++.++..+|.++...|++++|++.|++++...|+++ .++..++.++...|+..+|...+++++.
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999877654 4666779999999998888877776653
No 8
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-35 Score=257.78 Aligned_cols=439 Identities=21% Similarity=0.289 Sum_probs=313.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
|.++..+|+.+|+.|+|++||++|+.+|+..|+.+..|.+++-||...|+|++.++.+.++++++|++..++++++..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhcc-CCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchh----hhhcccCCCc----c
Q 009799 82 GLQDYIEAVNSYKKGLDI-DPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEM----WAKLTADPTT----R 152 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~ 152 (525)
.+|++.+|+....-..-. +-++......+-+++...+......... ......+++..+ ......++.. .
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k--~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLK--ENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 999999999877543322 1222222223333333333221000000 000000111000 0111111111 1
Q ss_pred cccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCC
Q 009799 153 SYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (525)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (525)
.--.+.......+.+....+. .|.. +.....+....+.. .
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e--~Y~~------a~~~~te~~~~~~~--------------~------------------ 312 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEE--GYLK------AYDKATEECLGSES--------------S------------------ 312 (606)
T ss_pred CccchhhHHHHHHHHHhhCch--hHHH------HHHHHHHHhhhhhh--------------h------------------
Confidence 111222222222222221110 0110 00000000000000 0
Q ss_pred ChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 233 PMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
.........-...+.++...|..++-.|++..|...|+++|.++|.+...+..+|.+|...++..+....|.++..
T Consensus 313 ----~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ 388 (606)
T KOG0547|consen 313 ----LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED 388 (606)
T ss_pred ----ccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence 0000000111355788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh--------HHHHhchHHHHHHHHHHHhhc
Q 009799 313 RGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD--------TLKKLNEAEKAKKELEQQEIF 384 (525)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~ 384 (525)
++|++ +.+|+.+|+++.-+++ +++|+..|++++.+.|... .+.+.+++.++...|+.+.+.
T Consensus 389 ldp~n-------~dvYyHRgQm~flL~q----~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 389 LDPEN-------PDVYYHRGQMRFLLQQ----YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK 457 (606)
T ss_pred cCCCC-------CchhHhHHHHHHHHHH----HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 5677788888888888 9999999999999888753 345677888888889998889
Q ss_pred CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC------CHHHHHHHHHHHH-HcCCchHHHHHHHHHHhcCCCCH
Q 009799 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK------DPRTYSNRAACYT-KLGAMPEGLKDADKCIELDPTFS 457 (525)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~ 457 (525)
.|..++++...|.++..++++++|++.|..++++.|. ++..+...|.+.. ..+++..|+..+.+|++++|..-
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH
Confidence 9999999999999999999999999999999999888 6666666665533 35788899999999999999988
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 497 (525)
.++..+|.+..++|+.++|+++|+++..+.-.-.+.....
T Consensus 538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~ 577 (606)
T KOG0547|consen 538 QAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAY 577 (606)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8999999999999999999999999888766555544433
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.6e-34 Score=303.36 Aligned_cols=469 Identities=12% Similarity=0.070 Sum_probs=310.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHH---------
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGY--------- 73 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------- 73 (525)
+.++.++......++++.|.+.+++++.++|+++.++..++.++...|+.++|...++++++++|+++.++
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -------HHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhH-HhHHHHHhhcccCCCCCCCCcccccccCchhhhhc
Q 009799 74 -------SRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGL-ADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKL 145 (525)
Q Consensus 74 -------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (525)
+.+|.++...|++++|+..|++++..+|.+......+ ..+....++
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~-------------------------- 162 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ-------------------------- 162 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc--------------------------
Confidence 6678889999999999999999999999886432211 111111111
Q ss_pred ccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHH-------HHHHhhhccCCCCC----------------C
Q 009799 146 TADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQAL-------GVLLNVKFKGPTGG----------------D 202 (525)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----------------~ 202 (525)
...++..+.+.+..+|.+...++..+.+.... ..+..+........ .
T Consensus 163 ----------~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~ 232 (1157)
T PRK11447 163 ----------RPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSD 232 (1157)
T ss_pred ----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCCh
Confidence 25677888888888998888766655554332 22222211100000 0
Q ss_pred c----cccccccCCCCCCCc---hhhc----------------cCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHH
Q 009799 203 D----VEMQDEDAPKGPETS---KEET----------------RKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNA 259 (525)
Q Consensus 203 ~----~~~~~~~~~~~~~~~---~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (525)
. .......++..+... .... -..-...+...+++..+...+...|..+.++..+|.+
T Consensus 233 ~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~ 312 (1157)
T PRK11447 233 ASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQA 312 (1157)
T ss_pred hhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 000000011000000 0000 0000011223444555555566666666666666666
Q ss_pred HHhcccHHHHHHHHHHHhhcCCCCHH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 260 AYKKKEFEKAIEHYSSALELDDEDIS--------------YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 260 ~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
+...|++++|+.+|+++++.+|++.. ....+|.++...|++++|+..|++++..+|++ .
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-------~ 385 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD-------S 385 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------H
Confidence 66666666666666666666665432 11233555556666666666666666666655 4
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhH-----------------------------------------
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT----------------------------------------- 364 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------------------------------- 364 (525)
.++..+|.++...++ +++|+..|++++...|....
T Consensus 386 ~a~~~Lg~~~~~~g~----~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 386 YAVLGLGDVAMARKD----YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred HHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 556667777777777 88888888888887766220
Q ss_pred ---------HHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHH--------
Q 009799 365 ---------LKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYS-------- 427 (525)
Q Consensus 365 ---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------- 427 (525)
+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..++++++..|+++..++
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG 541 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 113477888888888888888988888888899898899999998888888887777654433
Q ss_pred ------------------------------------------------------------------HHHHHHHHcCCchH
Q 009799 428 ------------------------------------------------------------------NRAACYTKLGAMPE 441 (525)
Q Consensus 428 ------------------------------------------------------------------~la~~~~~~~~~~~ 441 (525)
.+|.++...|++++
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 34555556666666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHH
Q 009799 442 GLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELK 518 (525)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 518 (525)
|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+++.++..++.++...|+..+|...++++.
T Consensus 622 A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 622 ARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666555544443
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=7.9e-33 Score=273.43 Aligned_cols=407 Identities=17% Similarity=0.141 Sum_probs=304.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
..+.++|.+++..|+|++|+..++++++.+|++..+++.+|.++..+|++++|+..|..+...++.+............
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l- 239 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL- 239 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-
Confidence 3578899999999999999999999999999999999999999999999999999999888777655433222221111
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCccc---------
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRS--------- 153 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 153 (525)
...+......+++..|.+...+..++..+.......... ........++....
T Consensus 240 ---~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~ 301 (615)
T TIGR00990 240 ---KKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA---------------GLEDSNELDEETGNGQLQLGLKS 301 (615)
T ss_pred ---HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh---------------hhhcccccccccccchHHHHHHH
Confidence 134556677777888887766666666543221110000 00000000000000
Q ss_pred ------ccchHHHHHHHHHHhh---CCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccC
Q 009799 154 ------YLDQDDFRNMMKDIQR---NPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRK 224 (525)
Q Consensus 154 ------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (525)
.....+...+.+.+.. .|.....+...+.+....+
T Consensus 302 ~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g------------------------------------ 345 (615)
T TIGR00990 302 PESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG------------------------------------ 345 (615)
T ss_pred HHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC------------------------------------
Confidence 0112344444455544 2444444544555444443
Q ss_pred CCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q 009799 225 PESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECI 304 (525)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~ 304 (525)
...+++..+...+..+|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 346 ------~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 346 ------KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred ------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHHhchHHHHHH
Q 009799 305 KDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKK 376 (525)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~ 376 (525)
..|++++.++|++ ...+..+|.++...|+ +++|+..|++++...|.. .++...|++++|+.
T Consensus 420 ~~~~kal~l~P~~-------~~~~~~la~~~~~~g~----~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 420 KDYQKSIDLDPDF-------IFSHIQLGVTQYKEGS----IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHHHHHHcCccC-------HHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999988 5667778888888888 999999999999988873 35677899999999
Q ss_pred HHHHHhhcCCCcHHHH------HHhhhHH-HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 009799 377 ELEQQEIFDPKIADEE------REKGNEF-FKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKC 449 (525)
Q Consensus 377 ~~~~~~~~~~~~~~~~------~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (525)
.|++++...|.....+ ...+..+ ...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|+++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999988754322 2233333 44799999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Q 009799 450 IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 450 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 489 (525)
+++.+.....+ ....+.+|.....++.+..|.
T Consensus 569 ~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~~~~~ 600 (615)
T TIGR00990 569 AELARTEGELV--------QAISYAEATRTQIQVQEDYPV 600 (615)
T ss_pred HHHhccHHHHH--------HHHHHHHHHHHHHHHHHHhHH
Confidence 99987754422 222455666665555555443
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.6e-33 Score=276.84 Aligned_cols=353 Identities=12% Similarity=0.070 Sum_probs=300.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhh
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQ 84 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 84 (525)
+...+..+++.|++++|+..++.++...|.++.+++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHH
Q 009799 85 DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMM 164 (525)
Q Consensus 85 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (525)
++++|+..|++++.++|++..++..++.++...|+. +.+...+.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~------------------------------------~eA~~~~~ 168 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKE------------------------------------LQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCh------------------------------------HHHHHHHH
Confidence 999999999999999999999999999888887765 33444444
Q ss_pred HHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHH
Q 009799 165 KDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAK 244 (525)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (525)
..+...|+...
T Consensus 169 ~~~~~~P~~~~--------------------------------------------------------------------- 179 (656)
T PRK15174 169 TQAQEVPPRGD--------------------------------------------------------------------- 179 (656)
T ss_pred HHHHhCCCCHH---------------------------------------------------------------------
Confidence 44444554322
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHH
Q 009799 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE-DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
.+...+ .+...|++++|+..+++++..+|. +......++.++...|++++|+..+.+++...|++
T Consensus 180 -------a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~------ 245 (656)
T PRK15174 180 -------MIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG------ 245 (656)
T ss_pred -------HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------
Confidence 222222 367789999999999999888763 34445566788889999999999999999998887
Q ss_pred HHHHHHHhhhhHHHhhhcccchHH----HHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHH
Q 009799 324 IARALTRKGTALVKMAKCSKDYEP----AIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF 399 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (525)
..++..+|.++...|+ +++ |+..|++++. .+|+++.++..+|.++
T Consensus 246 -~~~~~~Lg~~l~~~G~----~~eA~~~A~~~~~~Al~--------------------------l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 246 -AALRRSLGLAYYQSGR----SREAKLQAAEHWRHALQ--------------------------FNSDNVRIVTLYADAL 294 (656)
T ss_pred -HHHHHHHHHHHHHcCC----chhhHHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHH
Confidence 5566667777777777 775 6777777777 8999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 009799 400 FKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALET 479 (525)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 479 (525)
...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++..+..+|.++...|++++|+..
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHhccCCCCH-----HHHHHHHHHHHHhhhh
Q 009799 480 YQEGLKHDPQNQ-----ELLDGVRRCVQQINKA 507 (525)
Q Consensus 480 ~~~a~~~~p~~~-----~~~~~l~~~~~~~~~~ 507 (525)
|+++++.+|++. ++...+...+...+..
T Consensus 375 l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 375 FEHYIQARASHLPQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHhChhhchhhHHHHHHHHHHHHHhcCCc
Confidence 999999998863 3444555555555433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.3e-30 Score=261.59 Aligned_cols=107 Identities=17% Similarity=0.067 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
..++..|..+...|++++|+..|+++++.+|+++.+++.++.+|+..|++++|+..++++++.+|++...+..++.+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i--- 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI--- 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---
Confidence 46788999999999999999999999999999999999999999999999999999999999999999988888776
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (525)
+++++|+..|+++++.+|++.++...++..
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~ 151 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRS 151 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 999999999999999999999999998887
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-31 Score=249.87 Aligned_cols=424 Identities=16% Similarity=0.136 Sum_probs=323.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCc---hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC-HHHHHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD---NHVLYSNRSAAHASLHNYADALADAKKTVELKPDW-SKGYSRLGA 78 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~ 78 (525)
.++.-++.-++..|+|..+..+...++..... -++.++.+|.+|..+|+|++|..+|.++++.+|++ .-.++.+|.
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 45677888899999999999999988876543 34668999999999999999999999999999988 778899999
Q ss_pred HHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchH
Q 009799 79 AHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQD 158 (525)
Q Consensus 79 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
.|...|+++.|+.+|+++++..|++.+....++.+|...+... -..+.
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~--------------------------------~~~d~ 398 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQ--------------------------------EKRDK 398 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhh--------------------------------HHHHH
Confidence 9999999999999999999999999999999999888774221 11256
Q ss_pred HHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhH
Q 009799 159 DFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTE 238 (525)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (525)
+...+.+.+...|.+...|+..+.++..-..+..+..-. .++..
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~------------------------------------~A~d~ 442 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYG------------------------------------NALDI 442 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHH------------------------------------HHHHH
Confidence 677777888888888888888776655443332211000 00000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc-----CCC-----CHHHHHHHHHHHHHhcCHHHHHHHHH
Q 009799 239 EEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL-----DDE-----DISYLTNRAAVYLEMGKYEECIKDCD 308 (525)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~ 308 (525)
+.. ...+-.+..+.++|..++..|++.+|...|.+++.. +++ +....+++|.++...+++..|.+.|.
T Consensus 443 L~~--~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 443 LES--KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHH--cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 000 001123456667777777777777777777777655 111 12346777777777777777777777
Q ss_pred HHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------------------------
Q 009799 309 KAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP-------------------------- 362 (525)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------- 362 (525)
.++..+|.. ..++.++|......+. ..+|...++.++..+...
T Consensus 521 ~Ilkehp~Y-------Id~ylRl~~ma~~k~~----~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 521 SILKEHPGY-------IDAYLRLGCMARDKNN----LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred HHHHHCchh-------HHHHHHhhHHHHhccC----cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 777777766 4445555533333333 555555555555543220
Q ss_pred ---------hHH---------------------HHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHH
Q 009799 363 ---------DTL---------------------KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHY 412 (525)
Q Consensus 363 ---------~~~---------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 412 (525)
+.+ ...+..++|+..|.+++..+|.+..+-..+|.++...|++.+|..+|
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHH
Confidence 111 12356688999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 413 TESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD--PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 413 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
.++.+...+++.+|.++|.||..+|+|..|++.|+.+++.. .+++.++..||.+++..|.+.+|.+++..++.+.|.+
T Consensus 670 sqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 670 SQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 99998888889999999999999999999999999999874 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 009799 491 QELLDGVRRCVQQINKA 507 (525)
Q Consensus 491 ~~~~~~l~~~~~~~~~~ 507 (525)
+.+.++++.++.++...
T Consensus 750 ~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 750 TSVKFNLALVLKKLAES 766 (1018)
T ss_pred chHHhHHHHHHHHHHHH
Confidence 99999999999988754
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-31 Score=248.80 Aligned_cols=422 Identities=16% Similarity=0.165 Sum_probs=232.8
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC-HHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 009799 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW-SKGYSRLGAAHLGLQDYIEAVNSYKKGL 97 (525)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 97 (525)
+.|...|..++...|++..++++.|.+.+..|+|..|+.+|++++.++|.. ++..+.+|.|+.++|+.+.|+..|++++
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHH
Confidence 555566666666666666666666666666666666666666665555543 3445555556666666666666666666
Q ss_pred ccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHH
Q 009799 98 DIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLY 177 (525)
Q Consensus 98 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (525)
+++|.+..+...|+.+.....+.+ -....+..+......+|.++...
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~---------------------------------s~~~~~~ll~~ay~~n~~nP~~l 273 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSD---------------------------------SYKKGVQLLQRAYKENNENPVAL 273 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchH---------------------------------HHHHHHHHHHHHHhhcCCCcHHH
Confidence 666655555555555544443220 00233444444444444444443
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHH
Q 009799 178 LKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAG 257 (525)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (525)
...+..+-..+.+..+..-. ..........+..+..++.+|
T Consensus 274 ~~LAn~fyfK~dy~~v~~la---------------------------------------~~ai~~t~~~~~~aes~Y~~g 314 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLA---------------------------------------EHAIKNTENKSIKAESFYQLG 314 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHH---------------------------------------HHHHHhhhhhHHHHHHHHHHH
Confidence 33222222111111100000 000011112233444555555
Q ss_pred HHHHhcccHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH-----------
Q 009799 258 NAAYKKKEFEKAIEHYSSALELDDED-ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA----------- 325 (525)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~----------- 325 (525)
..|..+|+|++|..+|.+++..+|++ .-.++.+|..|+..|+++.|+.+|+++++..|++..+...++
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhH
Confidence 55555555555555555555555555 444555555555555555555555555555555443333222
Q ss_pred ----------------------------------------------------------HHHHHhhhhHHHhhhcccchHH
Q 009799 326 ----------------------------------------------------------RALTRKGTALVKMAKCSKDYEP 347 (525)
Q Consensus 326 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 347 (525)
..+.++|..++.+|. +.+
T Consensus 395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~----~~~ 470 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN----IEK 470 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC----hHH
Confidence 233334445556666 888
Q ss_pred HHHHHHHHHhcCC-----Ch-------------hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHH
Q 009799 348 AIETFQKALTEHR-----NP-------------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAI 409 (525)
Q Consensus 348 A~~~~~~~~~~~~-----~~-------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 409 (525)
|...|..++.... +. .++..+++++.|.+.|..+++.+|...+++..+|.+....+...+|.
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHH
Confidence 8888888776511 11 12344566777778888888888888888888887777777888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCc------------------------------------------------hH
Q 009799 410 QHYTESLRRNPKDPRTYSNRAACYTKLGAM------------------------------------------------PE 441 (525)
Q Consensus 410 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~------------------------------------------------~~ 441 (525)
..++.++..+..+|.+|..+|.+++...++ ++
T Consensus 551 ~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 551 LLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 888888887777777776666555444333 55
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHH
Q 009799 442 GLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEE 516 (525)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 516 (525)
|++.|.+++..+|.|..+-..+|.++...|++.+|...|.++.+--.+++++|.+++.|+...|++..|...++.
T Consensus 631 Alq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 631 ALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655555555555555555555555555555445555555555555555555555544333
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=5.6e-31 Score=258.91 Aligned_cols=352 Identities=12% Similarity=0.035 Sum_probs=290.6
Q ss_pred HHHhcCCHHHHHHHHHHHhcc---CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHH
Q 009799 11 AAFSSGDYEAAVRHFTEAISL---SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYI 87 (525)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 87 (525)
.++++.+|+.---+|...-+. ..++..-....+..+.+.|++++|+..++.++...|+++.++..+|.+....|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH
Confidence 345566666555555554433 22344556677888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHH
Q 009799 88 EAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDI 167 (525)
Q Consensus 88 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (525)
+|+..|++++..+|+++.++..+
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~l--------------------------------------------------------- 116 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLV--------------------------------------------------------- 116 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHH---------------------------------------------------------
Confidence 99999999999999987665444
Q ss_pred hhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhH
Q 009799 168 QRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERK 247 (525)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (525)
T Consensus 117 -------------------------------------------------------------------------------- 116 (656)
T PRK15174 117 -------------------------------------------------------------------------------- 116 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..+.+++...|++...+
T Consensus 117 ---------a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~------ 181 (656)
T PRK15174 117 ---------ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI------ 181 (656)
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH------
Confidence 55666677788888888888888888888888888888888888888888887777777664322
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh---------hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP---------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE 398 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 398 (525)
...+ .+...++ +++|+..+++++...+.. ..+...|++++|+..+.+++..+|+++.++..+|.+
T Consensus 182 -~~~~-~l~~~g~----~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~ 255 (656)
T PRK15174 182 -ATCL-SFLNKSR----LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLA 255 (656)
T ss_pred -HHHH-HHHHcCC----HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 2222 2444555 788888877777765421 234556778888888888888999999999999999
Q ss_pred HHhcCChhH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q 009799 399 FFKQQKYPE----AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYD 474 (525)
Q Consensus 399 ~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 474 (525)
+...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999986 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHh
Q 009799 475 KALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKER 520 (525)
Q Consensus 475 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 520 (525)
+|+..|++++..+|++......++.++...|+..+|...++++.+.
T Consensus 336 eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 336 AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999888888899999999999988877766654
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=3.3e-30 Score=259.12 Aligned_cols=398 Identities=14% Similarity=0.111 Sum_probs=296.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHH
Q 009799 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIE 88 (525)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 88 (525)
..++...|++++|+..|.++...+|....++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34566778888888888888777777777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHh
Q 009799 89 AVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQ 168 (525)
Q Consensus 89 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (525)
|+..++++++.+|++.. +..++.++...|+. ..++..+.+.+.
T Consensus 102 A~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~------------------------------------~~Al~~l~~al~ 144 (765)
T PRK10049 102 ALVKAKQLVSGAPDKAN-LLALAYVYKRAGRH------------------------------------WDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCH------------------------------------HHHHHHHHHHHH
Confidence 88888888888888877 77777777777665 566777777777
Q ss_pred hCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHH--------
Q 009799 169 RNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE-------- 240 (525)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 240 (525)
..|++...+...+......+... .++..+.
T Consensus 145 ~~P~~~~~~~~la~~l~~~~~~e------------------------------------------~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 145 RAPQTQQYPTEYVQALRNNRLSA------------------------------------------PALGAIDDANLTPAE 182 (765)
T ss_pred hCCCCHHHHHHHHHHHHHCCChH------------------------------------------HHHHHHHhCCCCHHH
Confidence 78877776665544433221110 0111111
Q ss_pred -HHHHHhHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHhcCHHHHHHHHHH
Q 009799 241 -KEAKERKEKALKEKEAGNAAYKKKEF---EKAIEHYSSALELDDEDISY-------LTNRAAVYLEMGKYEECIKDCDK 309 (525)
Q Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~p~~~~~-------~~~la~~~~~~~~~~~A~~~~~~ 309 (525)
..+...+....+...++......+++ ++|+..++.+++..|.++.. .......+...|++++|+..|++
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11111111111111122222233345 78999999999764444322 22212334677999999999999
Q ss_pred HHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh-----h-------HHHHhchHHHHHHH
Q 009799 310 AVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP-----D-------TLKKLNEAEKAKKE 377 (525)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~-------~~~~~~~~~~a~~~ 377 (525)
+++..|..+.. +...+|.++...++ +++|+..|++++...|.. . .+...+++++|+..
T Consensus 263 ll~~~~~~P~~------a~~~la~~yl~~g~----~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 263 LKAEGQIIPPW------AQRWVASAYLKLHQ----PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred hhccCCCCCHH------HHHHHHHHHHhcCC----cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 99886543321 22224677777777 999999999999876543 1 33566999999999
Q ss_pred HHHHhhcCCC---------------cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHH
Q 009799 378 LEQQEIFDPK---------------IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEG 442 (525)
Q Consensus 378 ~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 442 (525)
++++....|. ...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 9999988763 2456788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Q 009799 443 LKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (525)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 495 (525)
+..+++++.++|+++.+++.+|.++...|++++|...++++++..|+++.+..
T Consensus 413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999986654
No 17
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=100.00 E-value=4.7e-30 Score=213.33 Aligned_cols=345 Identities=18% Similarity=0.292 Sum_probs=285.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+..+++|..++..|++..|+..|..+++.+|++..+++.+|.+|+.+|+-..|+..+.+++++.|+...+...+|.++++
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
+|++++|...|..++..+|.+....-....+..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~----------------------------------------------- 151 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL----------------------------------------------- 151 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh-----------------------------------------------
Confidence 999999999999999999976432211111000
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
T Consensus 152 -------------------------------------------------------------------------------- 151 (504)
T KOG0624|consen 152 -------------------------------------------------------------------------------- 151 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
....+.+......++..|+...|+.....++++.|.+...+..++.||...|++..|+..++.+-++..++.+...
T Consensus 152 ----~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y 227 (504)
T KOG0624|consen 152 ----IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY 227 (504)
T ss_pred ----HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH
Confidence 0122333444556777899999999999999999999999999999999999999999999999999988865555
Q ss_pred HHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhH----HHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhH
Q 009799 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT----LKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE 398 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 398 (525)
.++..++.+| + .+.++...+++++++|+... +.++.+..+.+.. +..
T Consensus 228 kis~L~Y~vg-------d----~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les------------------~e~ 278 (504)
T KOG0624|consen 228 KISQLLYTVG-------D----AENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES------------------AEQ 278 (504)
T ss_pred HHHHHHHhhh-------h----HHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH------------------HHH
Confidence 5555555554 4 99999999999998877542 2223333222222 233
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q 009799 399 FFKQQKYPEAIQHYTESLRRNPKDPR----TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYD 474 (525)
Q Consensus 399 ~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 474 (525)
....++|.++++..++.++.+|..+. ....+..|+..-+++.+|+..+.+++.++|++..++...+..|....+|+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 45678899999999999999998543 44567888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009799 475 KALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (525)
Q Consensus 475 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 507 (525)
.|+..|++|.+.+|+|..+...+.++.....+.
T Consensus 359 ~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs 391 (504)
T KOG0624|consen 359 DAIHDYEKALELNESNTRAREGLERAKRLKKQS 391 (504)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998888776554443
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=8.8e-28 Score=241.25 Aligned_cols=254 Identities=9% Similarity=0.001 Sum_probs=224.8
Q ss_pred HHHhHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 243 AKERKE--KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 243 ~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
+...|. .+.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..+++++...|..
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~--- 542 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN--- 542 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc---
Confidence 334455 88899999999987 899999999999999999865 46677888889999999999999988765553
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhH-----HHHh---chHHHHHHHHHHHhhcCCCcHHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT-----LKKL---NEAEKAKKELEQQEIFDPKIADEE 392 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 392 (525)
..+..+|.++...|+ +++|+.++++++...|.... .... |++++|+..+++++..+|+ +..+
T Consensus 543 -----~a~~~la~all~~Gd----~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~ 612 (987)
T PRK09782 543 -----EDLLAAANTAQAAGN----GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAY 612 (987)
T ss_pred -----HHHHHHHHHHHHCCC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHH
Confidence 234566777777777 99999999999998776432 2334 9999999999999999997 9999
Q ss_pred HHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
..+|.++.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|+
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccC
Q 009799 473 YDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (525)
Q Consensus 473 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (525)
+++|+.+|+++++++|++..+....+.+.........+-
T Consensus 693 ~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999998888888777655554
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=1.1e-28 Score=248.03 Aligned_cols=414 Identities=14% Similarity=0.102 Sum_probs=321.3
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCC
Q 009799 22 VRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDP 101 (525)
Q Consensus 22 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 101 (525)
+.+++. -...|-++........+....|+.++|+..+.++...+|....++..+|.++...|++++|+..|+++++.+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455666 5566777888888889999999999999999999998999999999999999999999999999999999999
Q ss_pred CcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHH
Q 009799 102 NNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQ 181 (525)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (525)
.++.++..++.++...++. +.+...+.+.+...|++.. +...+
T Consensus 81 ~~~~a~~~la~~l~~~g~~------------------------------------~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQY------------------------------------DEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHCCCH------------------------------------HHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 9999999999998888776 5677777777888888776 55555
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 009799 182 RVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAY 261 (525)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (525)
.++...+.. ..++..+...+...|....++..+|.++.
T Consensus 124 ~~l~~~g~~------------------------------------------~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 124 YVYKRAGRH------------------------------------------WDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHCCCH------------------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444443322 34445556666666666666666666666
Q ss_pred hcccHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHH-----HhcCH---HHHHHHHHHHHHccccChhhHHHHHHHH
Q 009799 262 KKKEFEKAIEHYSSALELDDEDIS-----YLTNRAAVYL-----EMGKY---EECIKDCDKAVERGRELRSDFKMIARAL 328 (525)
Q Consensus 262 ~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~-----~~~~~---~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (525)
..+..++|+..++++.. .|+... ....+..+.. ..+++ ++|+..++.+++..|.++........+.
T Consensus 162 ~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 162 NNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred HCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 66666666666665554 443210 1111111111 12233 6677777777766555544433333444
Q ss_pred HHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC---------hhHHHHhchHHHHHHHHHHHhhcCCCc----HHHHHHh
Q 009799 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRN---------PDTLKKLNEAEKAKKELEQQEIFDPKI----ADEEREK 395 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l 395 (525)
......+...++ +++|+..|++++...+. ...+...|++++|+..|++++..+|.. ......+
T Consensus 241 ~d~l~~Ll~~g~----~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 241 IDRLGALLARDR----YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHHHHHHHhhh----HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 432223456677 99999999999987532 235677899999999999999888766 3567778
Q ss_pred hhHHHhcCChhHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHH
Q 009799 396 GNEFFKQQKYPEAIQHYTESLRRNPKD---------------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGY 460 (525)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 460 (525)
+.++...|++++|+..++++....|.. ..++..+|.++...|++++|+..+++++...|+++.++
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~ 396 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR 396 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 888999999999999999999887631 35678899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHh
Q 009799 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKER 520 (525)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 520 (525)
..+|.++...|++++|+..+++++.++|++..++..++.+...+++..+++..+++..++
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988777666653
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.5e-28 Score=222.64 Aligned_cols=307 Identities=21% Similarity=0.182 Sum_probs=259.8
Q ss_pred hHHHHHHHHHHh--hcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhH
Q 009799 36 HVLYSNRSAAHA--SLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (525)
Q Consensus 36 ~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (525)
...+..+|..|. .+-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-++.|-..+..-.+..+
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~ 396 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTT 396 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence 355666666664 445678999999997777788888899999999999999999999999999999777655555444
Q ss_pred HHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhh
Q 009799 114 KAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNV 193 (525)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (525)
+....+.
T Consensus 397 LWHLq~~------------------------------------------------------------------------- 403 (638)
T KOG1126|consen 397 LWHLQDE------------------------------------------------------------------------- 403 (638)
T ss_pred HHHHHhh-------------------------------------------------------------------------
Confidence 4443221
Q ss_pred hccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhH-HHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHH
Q 009799 194 KFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTE-EEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEH 272 (525)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 272 (525)
.++.. ....+..+|..+..|..+|.+|..+++++.|+++
T Consensus 404 ----------------------------------------v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~ 443 (638)
T KOG1126|consen 404 ----------------------------------------VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKC 443 (638)
T ss_pred ----------------------------------------HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHH
Confidence 00011 1222445566778888999999999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 009799 273 YSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETF 352 (525)
Q Consensus 273 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 352 (525)
|++++.++|....++..+|.=+.....++.|..+|++++..+|.+ ..+|+.+|.+|.++++ ++.|.-.|
T Consensus 444 f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek----~e~Ae~~f 512 (638)
T KOG1126|consen 444 FKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEK----LEFAEFHF 512 (638)
T ss_pred HHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccch----hhHHHHHH
Confidence 999999999999999999999999999999999999999999988 7888999999999999 99999999
Q ss_pred HHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009799 353 QKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAAC 432 (525)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 432 (525)
++|+. ++|.+......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.+
T Consensus 513 qkA~~--------------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 513 QKAVE--------------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred Hhhhc--------------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 99998 8888999999999999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Q 009799 433 YTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 492 (525)
+..++++++|+..+++.-++-|+...+++.+|.+|.++|+.+.|+..|.=|..++|.-..
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999999999999997655
No 21
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.7e-27 Score=202.78 Aligned_cols=352 Identities=20% Similarity=0.146 Sum_probs=284.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHH-----------------------------HhhcccHHHH
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAA-----------------------------HASLHNYADA 55 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-----------------------------~~~~g~~~~A 55 (525)
++..|.++-..|....|+..|..++...|-+-.+|..++.+ +....+.+++
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999888777666655443 3444556666
Q ss_pred HHHHHHhhcc-CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccc
Q 009799 56 LADAKKTVEL-KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGS 134 (525)
Q Consensus 56 ~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 134 (525)
+.-++..+.. .|++...-...|.+...+.++++|+..|+...+.+|-..+-...+..++......
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~-------------- 312 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK-------------- 312 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh--------------
Confidence 6666666666 5777777777777777777777777777777777776544433333332222110
Q ss_pred cccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCC
Q 009799 135 AFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKG 214 (525)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (525)
..++.+
T Consensus 313 --------------------------------------------------skLs~L------------------------ 318 (559)
T KOG1155|consen 313 --------------------------------------------------SKLSYL------------------------ 318 (559)
T ss_pred --------------------------------------------------HHHHHH------------------------
Confidence 000000
Q ss_pred CCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 009799 215 PETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVY 294 (525)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 294 (525)
.......+.-.++...-+|+.|...++.++|+.+|+++++++|....+|..+|.=|
T Consensus 319 ------------------------A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 319 ------------------------AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEY 374 (559)
T ss_pred ------------------------HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHH
Confidence 01111122234455666799999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHH
Q 009799 295 LEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKA 374 (525)
Q Consensus 295 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a 374 (525)
..+++...|+..|+++++++|.+ -++|+.+|+.|.-++. ..=|+-+|+++..
T Consensus 375 vEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~M----h~YaLyYfqkA~~----------------- 426 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKM----HFYALYYFQKALE----------------- 426 (559)
T ss_pred HHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcc----hHHHHHHHHHHHh-----------------
Confidence 99999999999999999999998 6888999999988888 9999999999999
Q ss_pred HHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHh---
Q 009799 375 KKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIE--- 451 (525)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--- 451 (525)
..|.++..|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++
T Consensus 427 ---------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 427 ---------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred ---------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998999999999999999999999999999998
Q ss_pred ----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009799 452 ----LDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 452 ----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 505 (525)
..|+...+...|+..+.+.+++++|..+..+++.-++...++...+..+...+.
T Consensus 498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 456677888889999999999999999999999998888888887777765543
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.3e-28 Score=220.41 Aligned_cols=220 Identities=18% Similarity=0.226 Sum_probs=199.6
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHH
Q 009799 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (525)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (525)
..+++...+--+--..-+..+..+|+.|+.|..+|.||.-+++++.|+++|++++.++|.. +.+|..+|.-+.
T Consensus 394 ST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-------aYayTLlGhE~~ 466 (638)
T KOG1126|consen 394 STTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-------AYAYTLLGHESI 466 (638)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-------chhhhhcCChhh
Confidence 3444444444444445566788899999999999999999999999999999999999987 788888888888
Q ss_pred HhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHH
Q 009799 337 KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (525)
Q Consensus 337 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 416 (525)
.... ++.|..+|++++. .+|.+..+|+.+|.+|.++++++.|.-.|++|+
T Consensus 467 ~~ee----~d~a~~~fr~Al~--------------------------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 467 ATEE----FDKAMKSFRKALG--------------------------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred hhHH----HHhHHHHHHhhhc--------------------------CCchhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 8888 9999999999888 899999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHH
Q 009799 417 RRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (525)
Q Consensus 417 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 496 (525)
+++|.+......+|.++.++|+.++|+..|++|+.++|.++-..+..|.+++.++++++|+..+++..++.|++..++..
T Consensus 517 ~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 517 EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccCCC
Q 009799 497 VRRCVQQINKAGRGELS 513 (525)
Q Consensus 497 l~~~~~~~~~~~~a~~~ 513 (525)
+++++.++|+...|...
T Consensus 597 lgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 597 LGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHHHHHHHccchHHHHh
Confidence 99999999998776543
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=9.5e-27 Score=219.40 Aligned_cols=309 Identities=15% Similarity=0.129 Sum_probs=241.8
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHH
Q 009799 36 HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (525)
Q Consensus 36 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (525)
....+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+....
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------- 104 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE---------- 104 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH----------
Confidence 4556677888888899999999999999999988888999999999999999999998888764221110
Q ss_pred HHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhc
Q 009799 116 AASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKF 195 (525)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (525)
T Consensus 105 -------------------------------------------------------------------------------- 104 (389)
T PRK11788 105 -------------------------------------------------------------------------------- 104 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009799 196 KGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSS 275 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 275 (525)
.....+..+|.++...|++++|+..|++
T Consensus 105 ----------------------------------------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~ 132 (389)
T PRK11788 105 ----------------------------------------------------QRLLALQELGQDYLKAGLLDRAEELFLQ 132 (389)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1234466778888889999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 009799 276 ALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKA 355 (525)
Q Consensus 276 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 355 (525)
+++..|.+..++..++.++...|++++|+..++++++..|..... ..+..+..+|.++...++ +++|+..|+++
T Consensus 133 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~----~~~A~~~~~~a 206 (389)
T PRK11788 133 LVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGD----LDAARALLKKA 206 (389)
T ss_pred HHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCC----HHHHHHHHHHH
Confidence 998888888889999999999999999999999988877764322 224556677877777777 88888888888
Q ss_pred HhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC-HHHHHHHHHHHH
Q 009799 356 LTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD-PRTYSNRAACYT 434 (525)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~ 434 (525)
++ ..|....++..+|.++...|++++|+..+++++..+|.+ ..++..++.++.
T Consensus 207 l~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 207 LA--------------------------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred Hh--------------------------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 87 677777888888888888999999999999988887765 456778888888
Q ss_pred HcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH--hhhhcccCC
Q 009799 435 KLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ--INKAGRGEL 512 (525)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~--~~~~~~a~~ 512 (525)
..|++++|+..++++++..|+... +..+|.++...|++++|+..|+++++.+|++......+...+.. .|+..++..
T Consensus 261 ~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~ 339 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLL 339 (389)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHH
Confidence 899999999999998888887644 47888888889999999999998888888887666555544432 224444444
Q ss_pred ChHHHHH
Q 009799 513 SPEELKE 519 (525)
Q Consensus 513 ~~~~~~~ 519 (525)
..++..+
T Consensus 340 ~~~~~~~ 346 (389)
T PRK11788 340 LLRDLVG 346 (389)
T ss_pred HHHHHHH
Confidence 4444443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=9.5e-26 Score=222.12 Aligned_cols=433 Identities=13% Similarity=0.052 Sum_probs=298.9
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++..+..|...+++|+++.|+..|+++++.+|+++.....++.++...|+.++|+.++++++.-.|.....+..+|.++.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999997555589999999999999999999999444444555555588999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
.+|++++|++.|+++++.+|+++.++..++.++...++. ..++.
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~------------------------------------~eAl~ 157 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG------------------------------------GVVLK 157 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH------------------------------------HHHHH
Confidence 999999999999999999999999998887777777554 55666
Q ss_pred HHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHH
Q 009799 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (525)
.+.+....+|..... .....+....+ ....++....+
T Consensus 158 ~l~~l~~~dp~~~~~-l~layL~~~~~------------------------------------------~~~~AL~~~ek 194 (822)
T PRK14574 158 QATELAERDPTVQNY-MTLSYLNRATD------------------------------------------RNYDALQASSE 194 (822)
T ss_pred HHHHhcccCcchHHH-HHHHHHHHhcc------------------------------------------hHHHHHHHHHH
Confidence 677777777763222 11111111000 11124455555
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHH--HHHHHHHHHhc------------CHHHHHHHH
Q 009799 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYL--TNRAAVYLEMG------------KYEECIKDC 307 (525)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~--~~la~~~~~~~------------~~~~A~~~~ 307 (525)
.+...|.+...+..+...+...|-...|.+...+--.........+ ...+.-..+.+ -.+.|+..+
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 5666666666666666666666666555554443211111111111 11111111111 234456666
Q ss_pred HHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC---------hhHHHHhchHHHHHHHH
Q 009799 308 DKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN---------PDTLKKLNEAEKAKKEL 378 (525)
Q Consensus 308 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~ 378 (525)
+..+...+..++.....-.+....-.++...++ +.+++..|+........ .+.+...+++++|+.+|
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r----~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ----TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhh----HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 666664444443322223344444445556666 88888888887754422 34667778888888888
Q ss_pred HHHhhcCC------CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCC---------------CCHHHHHHHHHHHHHcC
Q 009799 379 EQQEIFDP------KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP---------------KDPRTYSNRAACYTKLG 437 (525)
Q Consensus 379 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~~~~~~ 437 (525)
.+++...| ........|...+...+++++|..++++..+..| +.......++.++...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 88876542 2333346777788888888888888888877444 12356677888888888
Q ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHH
Q 009799 438 AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEEL 517 (525)
Q Consensus 438 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 517 (525)
++.+|.+.+++.+...|.++..+..+|.++...|.+.+|...++.+..++|++..+....+.+...+++..+++...++.
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888887776544443
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=2.2e-26 Score=216.89 Aligned_cols=303 Identities=13% Similarity=0.071 Sum_probs=251.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC----HHHHHHHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW----SKGYSRLGAA 79 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 79 (525)
..+..|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999864332 3578899999
Q ss_pred HhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHH
Q 009799 80 HLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDD 159 (525)
Q Consensus 80 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (525)
|...|++++|+..|+++++.+|.+..+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~----------------------------------------------------- 143 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGA----------------------------------------------------- 143 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHH-----------------------------------------------------
Confidence 999999999999999999877654433
Q ss_pred HHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHH
Q 009799 160 FRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEE 239 (525)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (525)
T Consensus 144 -------------------------------------------------------------------------------- 143 (389)
T PRK11788 144 -------------------------------------------------------------------------------- 143 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHcc
Q 009799 240 EKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI-----SYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (525)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 314 (525)
+..++.++...|++++|+..++++++..|.+. ..+..+|.++...|++++|+..++++++..
T Consensus 144 -------------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 144 -------------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred -------------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 34456677788999999999999998887653 356678889999999999999999999988
Q ss_pred ccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCc-HHHHH
Q 009799 315 RELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI-ADEER 393 (525)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 393 (525)
|+. ..++..+|.++...++ +++|+..+++++. .+|.. ..++.
T Consensus 211 p~~-------~~~~~~la~~~~~~g~----~~~A~~~~~~~~~--------------------------~~p~~~~~~~~ 253 (389)
T PRK11788 211 PQC-------VRASILLGDLALAQGD----YAAAIEALERVEE--------------------------QDPEYLSEVLP 253 (389)
T ss_pred cCC-------HHHHHHHHHHHHHCCC----HHHHHHHHHHHHH--------------------------HChhhHHHHHH
Confidence 876 4566677777777777 9999999999887 44544 45677
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hc
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF--LK 471 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g 471 (525)
.++.++...|++++|+..++++++..|+... +..++.++...|++++|+..++++++..|++......++..+.. .|
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc
Confidence 8899999999999999999999999997654 48899999999999999999999999999987665445444422 45
Q ss_pred CHHHHHHHHHHHhc----cCCCC
Q 009799 472 EYDKALETYQEGLK----HDPQN 490 (525)
Q Consensus 472 ~~~~A~~~~~~a~~----~~p~~ 490 (525)
+..+|+..+++.++ .+|++
T Consensus 333 ~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 333 RAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred cchhHHHHHHHHHHHHHhCCCCE
Confidence 88888887776654 45553
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-26 Score=200.73 Aligned_cols=390 Identities=19% Similarity=0.176 Sum_probs=265.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHhhh
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL-KPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~ 83 (525)
|.+++-+|...|+|++.++...++++++|+.+.+++.++.++..+|++.+|+....-.--+ +=.+...-..+-+++-++
T Consensus 152 YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~ 231 (606)
T KOG0547|consen 152 YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ 231 (606)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999877543211 112333333333444443
Q ss_pred hhHHHHHHHHHHhhc--cCCCcHHHHhhHHhHHHHHhhccc----CCCCCCCCcccccccCchhhhhcccCCCcccccch
Q 009799 84 QDYIEAVNSYKKGLD--IDPNNEALKSGLADAKAAASASFR----SRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQ 157 (525)
Q Consensus 84 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (525)
|. ...++-++ ..|.-|.+ ..+...+........ ......+..+ .+..+.+.... ...| .
T Consensus 232 a~-----~ka~e~~k~nr~p~lPS~-~fi~syf~sF~~~~~~~~~~~~~ksDa~l------~~~l~~l~~~~-~e~Y--~ 296 (606)
T KOG0547|consen 232 AM-----KKAKEKLKENRPPVLPSA-TFIASYFGSFHADPKPLFDNKSDKSDAAL------AEALEALEKGL-EEGY--L 296 (606)
T ss_pred HH-----HHHHHhhcccCCCCCCcH-HHHHHHHhhccccccccccCCCccchhhH------HHHHHHHHhhC-chhH--H
Confidence 32 22222232 11221111 111111111100000 0000000000 00000000000 0000 1
Q ss_pred HHHHHHHHHHhh-----CCCchhHH-hhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCC
Q 009799 158 DDFRNMMKDIQR-----NPNNLNLY-LKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEP 231 (525)
Q Consensus 158 ~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (525)
.+.+.+.+.... ..+.++.- -.....+...|.+.-+.. .
T Consensus 297 ~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g-----------------------------------~ 341 (606)
T KOG0547|consen 297 KAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG-----------------------------------D 341 (606)
T ss_pred HHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC-----------------------------------C
Confidence 111111111111 11111111 122333333343332222 2
Q ss_pred CChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 009799 232 EPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAV 311 (525)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 311 (525)
...+...+...+..+|.....|+.+|..|...++.++-...|.++..++|.++++|+.+|.+++-++++++|+..|++++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred chhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 23444566777777788888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC--------hhHHHHhchHHHHHHHHHHHhh
Q 009799 312 ERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------PDTLKKLNEAEKAKKELEQQEI 383 (525)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~ 383 (525)
.++|++ +..+..++.+.++.++ ++++...|+.+....|. .+++...+++..|++.|..++.
T Consensus 422 ~L~pe~-------~~~~iQl~~a~Yr~~k----~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 422 SLDPEN-------AYAYIQLCCALYRQHK----IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred hcChhh-------hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999998 6667777777777777 99999999999999887 3467788999999999999999
Q ss_pred cCCC------cHHHHHHhhhHHH-hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC
Q 009799 384 FDPK------IADEEREKGNEFF-KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (525)
Q Consensus 384 ~~~~------~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (525)
+.|. ++..+...|.+.. ..+++..|+.+++++++++|.+-.++..+|.+..++|+.++|+++|++++.+...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9998 6666666665543 4589999999999999999999999999999999999999999999999876433
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.96 E-value=1.4e-25 Score=209.77 Aligned_cols=371 Identities=17% Similarity=0.156 Sum_probs=286.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+.++..|+.++..|++++|..++.++|.++|.++.+|+.+|.||..+|+.++|....-.|-.++|++.+.|..++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
+|++.+|+-+|.+|++.+|.+.......+.++...|.. ..+...
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~------------------------------------~~Am~~ 263 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL------------------------------------KRAMET 263 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH------------------------------------HHHHHH
Confidence 99999999999999999999999999999999999886 567778
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
+.+.++..|......
T Consensus 264 f~~l~~~~p~~d~er----------------------------------------------------------------- 278 (895)
T KOG2076|consen 264 FLQLLQLDPPVDIER----------------------------------------------------------------- 278 (895)
T ss_pred HHHHHhhCCchhHHH-----------------------------------------------------------------
Confidence 888888887221111
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcc--ccCh
Q 009799 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL--DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG--RELR 318 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~ 318 (525)
.-..-...+..+...++-+.|++.++.++.. +-.....+..++.+++....++.|........... +++.
T Consensus 279 ------~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 279 ------IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred ------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 1111223356666677779999999999883 33345667788999999999999998887766511 1110
Q ss_pred h--------------------hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHH
Q 009799 319 S--------------------DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKEL 378 (525)
Q Consensus 319 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 378 (525)
. ....+..+...++.+..+... ..+++..+..--..
T Consensus 353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e----~~e~ll~~l~~~n~-------------------- 408 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERE----LLEALLHFLVEDNV-------------------- 408 (895)
T ss_pred hhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccc----hHHHHHHHHHHhcC--------------------
Confidence 0 000001112222222222222 33333222211110
Q ss_pred HHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH
Q 009799 379 EQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK-DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS 457 (525)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 457 (525)
...+.++.+..++..+...|++.+|+.+|..+....+. +..+|+.+|.||..+|.+++|+++|++++...|++.
T Consensus 409 -----~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 409 -----WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred -----ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch
Confidence 12356788999999999999999999999999887664 568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC---------HHHHHHHHHHHHHhhhhcc
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN---------QELLDGVRRCVQQINKAGR 509 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------~~~~~~l~~~~~~~~~~~~ 509 (525)
++...|+.++.++|+.++|.+.+.....-+|.+ ..+......++.+.|+..+
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999987444332 2344455556666665433
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.8e-25 Score=190.06 Aligned_cols=382 Identities=14% Similarity=0.100 Sum_probs=282.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccH---HH----------------HHHHHHHhhcc
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNY---AD----------------ALADAKKTVEL 65 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~----------------A~~~~~~al~~ 65 (525)
.+..|..++....|+.|.-.++.... +.. .+..-.+.+-.|.. ++ .+..+.+-++.
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s--~k~---~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~ 155 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKS--KKS---AFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLES 155 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcch--HHH---HHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHH
Confidence 45678899999999999998888754 222 22111222222211 11 11111111111
Q ss_pred ----CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchh
Q 009799 66 ----KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEM 141 (525)
Q Consensus 66 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (525)
...++-.++..|.++.+.|....|+..|..++...|-+..+|..|..+......
T Consensus 156 ~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~---------------------- 213 (559)
T KOG1155|consen 156 KHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI---------------------- 213 (559)
T ss_pred HHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----------------------
Confidence 134567789999999999999999999999999999999999988776433211
Q ss_pred hhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhh
Q 009799 142 WAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEE 221 (525)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (525)
....+...|.+
T Consensus 214 ---------------------~~~l~~~l~~~------------------------------------------------ 224 (559)
T KOG1155|consen 214 ---------------------LSILVVGLPSD------------------------------------------------ 224 (559)
T ss_pred ---------------------HHHHHhcCccc------------------------------------------------
Confidence 11111111111
Q ss_pred ccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHhcCH
Q 009799 222 TRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL-DDEDISYLTNRAAVYLEMGKY 300 (525)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~ 300 (525)
...-.-+.++.++......++++.-++..+.. .|.+.......|.+.....++
T Consensus 225 --------------------------~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDf 278 (559)
T KOG1155|consen 225 --------------------------MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDF 278 (559)
T ss_pred --------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhH
Confidence 12222334555666666778888888877777 788888888888888888888
Q ss_pred HHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCC---C-----hhHHHHhchHH
Q 009799 301 EECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR---N-----PDTLKKLNEAE 372 (525)
Q Consensus 301 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~-----~~~~~~~~~~~ 372 (525)
++|+..|+.+.+.+|-..+.....+.+++-+.. -.+-.-+-..+..++. . ++.+...++.+
T Consensus 279 D~a~s~Feei~knDPYRl~dmdlySN~LYv~~~-----------~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 279 DQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND-----------KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh-----------hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 888888888888877655544444444433321 1111112222222221 1 34556667778
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 373 KAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 373 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
+|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.+..+|+.+|+.|.-++...=|+-+|++|+..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 453 DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 453 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
.|+++..|..||.||.++++.++|+++|++++.....+..++..|++++.++++..+|....++.++
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887777766
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-25 Score=196.83 Aligned_cols=425 Identities=17% Similarity=0.143 Sum_probs=304.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHh------hccCCCC--------
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKT------VELKPDW-------- 69 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~-------- 69 (525)
..+.+|++++-.|+|..|....+.- ..+..+..+.+..+.|+....++++|...+.+. +..+|.+
T Consensus 51 d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n 129 (611)
T KOG1173|consen 51 DIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELN 129 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccC
Confidence 3567889999999999988877765 555667889999999999999999999988733 1111211
Q ss_pred -----------HHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccC
Q 009799 70 -----------SKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAG 138 (525)
Q Consensus 70 -----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (525)
....+.+|.+|..+.+.++|...|.+|+..++.+.++...+........+.
T Consensus 130 ~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~E------------------ 191 (611)
T KOG1173|consen 130 SAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQE------------------ 191 (611)
T ss_pred cccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhH------------------
Confidence 234677899999999999999999999999999988877665544333211
Q ss_pred chhhhhcccCCCcccccchHHHHHHHHHHh-------------hCC--------CchhHHhhHHHHHHHHHHHHhhhccC
Q 009799 139 PEMWAKLTADPTTRSYLDQDDFRNMMKDIQ-------------RNP--------NNLNLYLKDQRVMQALGVLLNVKFKG 197 (525)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (525)
-+..+...+... .............+ .+| ++........+..-....+.
T Consensus 192 --e~~ll~~l~~a~--~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~------ 261 (611)
T KOG1173|consen 192 --EFELLESLDLAM--LTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFK------ 261 (611)
T ss_pred --HHHHHhcccHHh--hhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHH------
Confidence 000000000000 00000000000000 000 00000000000000000000
Q ss_pred CCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 009799 198 PTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSAL 277 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 277 (525)
+-..........+|-....+...--++...|+..+-...-.+.+
T Consensus 262 ------------------------------------~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV 305 (611)
T KOG1173|consen 262 ------------------------------------ECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV 305 (611)
T ss_pred ------------------------------------HHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 00011112222222222222222225666666666666666666
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 278 ELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 278 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
+..|+.+..|+..|..|...|++.+|.++|.++..++|.. +.+|...|..+...+. .++|+..|..+-+
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f-------gpaWl~fghsfa~e~E----hdQAmaaY~tAar 374 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF-------GPAWLAFGHSFAGEGE----HDQAMAAYFTAAR 374 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc-------cHHHHHHhHHhhhcch----HHHHHHHHHHHHH
Confidence 6778888889999999999999999999999999999988 6777778888888888 9999999999999
Q ss_pred cCCChh--------HHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCC----C---C
Q 009799 358 EHRNPD--------TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP----K---D 422 (525)
Q Consensus 358 ~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~---~ 422 (525)
..+... .+...++++.|.++|.+++.+.|.+|-+...+|.+.+..+.|.+|..+|+.++..-+ . -
T Consensus 375 l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w 454 (611)
T KOG1173|consen 375 LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW 454 (611)
T ss_pred hccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence 887632 345678999999999999999999999999999999999999999999999984322 1 2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009799 423 PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (525)
Q Consensus 423 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 502 (525)
...+.++|.++.+++.+++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.++|++..+...|+.+..
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred Hh
Q 009799 503 QI 504 (525)
Q Consensus 503 ~~ 504 (525)
..
T Consensus 535 ~~ 536 (611)
T KOG1173|consen 535 DS 536 (611)
T ss_pred hh
Confidence 63
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=194.55 Aligned_cols=477 Identities=15% Similarity=0.151 Sum_probs=324.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCC-----CHHHHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAIS--LSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD-----WSKGYSRL 76 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l 76 (525)
.+++++..|-...-+.+|+..|+-+++ ..|+....-.++|.++++..+|.+|+++|+.++..-|. ....+.++
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 578889999999999999999998876 46788888899999999999999999999999998885 24677888
Q ss_pred HHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccc
Q 009799 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLD 156 (525)
Q Consensus 77 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
|..+.+.|+|+.|+..|+.+++..|+...++... .++...|+.++-+. .+..... +...+....|+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~-i~~f~i~d~ekmke-----af~kli~-------ip~~~dddkyi~ 349 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLI-ICAFAIGDAEKMKE-----AFQKLID-------IPGEIDDDKYIK 349 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhh-hhheecCcHHHHHH-----HHHHHhc-------CCCCCCcccccC
Confidence 9999999999999999999999999876654433 33333332211000 0000000 011111111111
Q ss_pred h---HHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCC------
Q 009799 157 Q---DDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPES------ 227 (525)
Q Consensus 157 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 227 (525)
. +.-..+.+.+.. +.+..+-+................-.+-...++..-..++...-..+.+..-.+..
T Consensus 350 ~~ddp~~~ll~eai~n--d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~ 427 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKN--DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAG 427 (840)
T ss_pred CcCCcchHHHHHHHhh--HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHH
Confidence 0 000000111100 00000000000000000000000000000000000000000000000000000000
Q ss_pred ---CCCCCChhhhHHHHHHHHh-HHHHHHHHHHHHHHHh--cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHH
Q 009799 228 ---EPEPEPMELTEEEKEAKER-KEKALKEKEAGNAAYK--KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYE 301 (525)
Q Consensus 228 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~ 301 (525)
..+....+++.+....+.+ .....+-.++...++. -.++..|..+-..++.++..++.+..+.|.+-+..|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 0011122222222222221 1222333444444444 347888888888899888889999999999999999999
Q ss_pred HHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC--------hhHHHHhchHHH
Q 009799 302 ECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------PDTLKKLNEAEK 373 (525)
Q Consensus 302 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~ 373 (525)
+|...|+.++..+... ..+++++|..+..+++ .++|+.+|-+...+-.+ ..++..+.+..+
T Consensus 508 ka~~~ykeal~ndasc-------~ealfniglt~e~~~~----ldeald~f~klh~il~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASC-------TEALFNIGLTAEALGN----LDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred HHHHHHHHHHcCchHH-------HHHHHHhcccHHHhcC----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHH
Confidence 9999999999876655 6788999999999999 99999999887664433 346677888999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 009799 374 AKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD 453 (525)
Q Consensus 374 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 453 (525)
|++.+.++..+-|++|.++..+|.+|-+.|+-.+|.+++-......|.+.++.-.+|..|....-+++|+.+|+++--+.
T Consensus 577 aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 454 PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 454 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
|+........+.|+.+.|+|+.|.+.|+...+..|.+.+.+..|.++...+|-
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999888775
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=1.9e-22 Score=199.03 Aligned_cols=422 Identities=9% Similarity=0.005 Sum_probs=272.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhH
Q 009799 7 AKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDY 86 (525)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 86 (525)
.....+...|++++|+..+++++...|.....+..+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 55677788899999999999999444445555555688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHH
Q 009799 87 IEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKD 166 (525)
Q Consensus 87 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (525)
++|+..++++...+|.+... ..++.++...++. ..++..+.+.
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~------------------------------------~~AL~~~ekl 195 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNY-MTLSYLNRATDRN------------------------------------YDALQASSEA 195 (822)
T ss_pred HHHHHHHHHhcccCcchHHH-HHHHHHHHhcchH------------------------------------HHHHHHHHHH
Confidence 99999999999999986554 4444444332221 3478888999
Q ss_pred HhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchh-------------hccCCCCCCCCCC
Q 009799 167 IQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKE-------------ETRKPESEPEPEP 233 (525)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 233 (525)
+..+|++...+......+...+...... ......|+.... ..+..........
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~--------------~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPAL--------------RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHH--------------HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 9999999888776555554443211000 000000100000 0000000000001
Q ss_pred h-------hhhHHHHHHH---HhH----HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Q 009799 234 M-------ELTEEEKEAK---ERK----EKALKEKEAGNAAYKKKEFEKAIEHYSSALELD-DEDISYLTNRAAVYLEMG 298 (525)
Q Consensus 234 ~-------~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~ 298 (525)
+ ++......+. ..| ....+....-..+...+++.+++..|+.+.... |-...+....|..|+..+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 1 1111112111 111 112222233333444555555555555544332 223444555555555555
Q ss_pred CHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHH
Q 009799 299 KYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKEL 378 (525)
Q Consensus 299 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 378 (525)
++++|+.+|..++...|........ ......+...+...++ +++|..++++.....|- . ....+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~-~~~~~~L~yA~ld~e~----~~~A~~~l~~~~~~~p~-~-~~~~~~~------- 407 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDD-LLDADDLYYSLNESEQ----LDKAYQFAVNYSEQTPY-Q-VGVYGLP------- 407 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcc-hHHHHHHHHHHHhccc----HHHHHHHHHHHHhcCCc-E-EeccCCC-------
Confidence 5555555555555443311000000 1112333344444444 55555555555543221 0 0000000
Q ss_pred HHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHH
Q 009799 379 EQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK 458 (525)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (525)
...-+|+.......++.++...|++.+|.+.+++.+...|.|+.++..+|.++...|.+.+|...++.+..++|++..
T Consensus 408 --~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 408 --GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred --CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 000345667888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Q 009799 459 GYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (525)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 495 (525)
+...+|.++..+|++.+|......+++..|+++....
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999999999999986553
No 32
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.7e-25 Score=186.73 Aligned_cols=317 Identities=26% Similarity=0.424 Sum_probs=256.9
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
|+....+|..++.+.+|.+|+..|..|+...|+++..|.+++.+++..|++++|.-..++.++++|..+..+...+.|+.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
..++..+|...++ +..+. ..+.. +.
T Consensus 129 a~~~~i~A~~~~~--------~~~~~-~~ana----------------------------------------------l~ 153 (486)
T KOG0550|consen 129 ALSDLIEAEEKLK--------SKQAY-KAANA----------------------------------------------LP 153 (486)
T ss_pred hhHHHHHHHHHhh--------hhhhh-HHhhh----------------------------------------------hh
Confidence 9999999998887 11111 00000 00
Q ss_pred HHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHH
Q 009799 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (525)
.+...+....
T Consensus 154 ~~~~~~~s~s---------------------------------------------------------------------- 163 (486)
T KOG0550|consen 154 TLEKLAPSHS---------------------------------------------------------------------- 163 (486)
T ss_pred hhhccccccc----------------------------------------------------------------------
Confidence 0000000000
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
..|.-.......+.++...|++++|...--..+++++.+..+++..|.++...++.+.|+..|++++.++|++...-
T Consensus 164 ---~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk 240 (486)
T KOG0550|consen 164 ---REPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK 240 (486)
T ss_pred ---CCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH
Confidence 00223344455678888899999999999999999999999999999999999999999999999999999753221
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (525)
..+ ..|.....+...|+-.++
T Consensus 241 ----------------------------~~~-------------------------------~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 241 ----------------------------SAS-------------------------------MMPKKLEVKKERGNDAFK 261 (486)
T ss_pred ----------------------------hHh-------------------------------hhHHHHHHHHhhhhhHhh
Confidence 111 234445667778888999
Q ss_pred cCChhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q 009799 402 QQKYPEAIQHYTESLRRNPKD----PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 477 (525)
.|+|..|.++|..+|.++|++ +.+|.++|.+..++|+..+|+..++.+++++|....++...|.|+..+++|++|+
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999975 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 478 ETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 478 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
+.|+++++...+ .+....+..+...+.+
T Consensus 342 ~d~~~a~q~~~s-~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 342 EDYEKAMQLEKD-CEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 999999998776 5566666665555543
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=7.3e-23 Score=191.83 Aligned_cols=327 Identities=15% Similarity=0.165 Sum_probs=261.0
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHH
Q 009799 36 HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (525)
Q Consensus 36 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (525)
...++..|..++..|++++|...+.++++.+|.++.+|+.+|.+|..+|+.+++...+-.|-.++|++.+.|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l----- 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL----- 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH-----
Confidence 456778888889999999999999999999999999999999999999999999999999999999987776655
Q ss_pred HHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhc
Q 009799 116 AASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKF 195 (525)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (525)
T Consensus 214 -------------------------------------------------------------------------------- 213 (895)
T KOG2076|consen 214 -------------------------------------------------------------------------------- 213 (895)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009799 196 KGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSS 275 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 275 (525)
+....++|++.+|.-+|.+
T Consensus 214 -------------------------------------------------------------adls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 214 -------------------------------------------------------------ADLSEQLGNINQARYCYSR 232 (895)
T ss_pred -------------------------------------------------------------HHHHHhcccHHHHHHHHHH
Confidence 4445566899999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 009799 276 ALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKA 355 (525)
Q Consensus 276 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 355 (525)
+++.+|.+.......+.+|.++|+...|...|.+++...|. ..+...-..-......+...++ -+.|++.+..+
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~--~d~er~~d~i~~~~~~~~~~~~----~e~a~~~le~~ 306 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP--VDIERIEDLIRRVAHYFITHNE----RERAAKALEGA 306 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc--hhHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999983 2333333444445666777777 78899988888
Q ss_pred HhcCCC----------hhHHHHhchHHHHHHHHHHHhh-----------------------------cCCCcHHHHHHhh
Q 009799 356 LTEHRN----------PDTLKKLNEAEKAKKELEQQEI-----------------------------FDPKIADEEREKG 396 (525)
Q Consensus 356 ~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~-----------------------------~~~~~~~~~~~l~ 396 (525)
+..... ..++....+++.+......... ..++-+.....++
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 884333 1244555666666665544333 0111122255556
Q ss_pred hHHHhcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHH
Q 009799 397 NEFFKQQKYPEAIQHYTESLRRNP-KDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT-FSKGYTRKGAIQFFLKEYD 474 (525)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~ 474 (525)
.+..+.++..+++..+..--...| +++..+..++..+...|++.+|+.+|..+....+. +..+|+.+|.||..+|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 666666666666665543333224 35789999999999999999999999999987654 4679999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCCh
Q 009799 475 KALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSP 514 (525)
Q Consensus 475 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 514 (525)
+|+++|++++.+.|++.++...|+.++.++|+.++|...+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999988765443
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.1e-23 Score=183.08 Aligned_cols=289 Identities=19% Similarity=0.172 Sum_probs=247.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+.+..++..++..++|.+..+.++..++.+|-++.++-..--|+..+|+..+=...-.+.++.+|+.+-.|+..|..|..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH
Confidence 45678899999999999999999999999998887776555599999999998888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
.|++.+|..+|.++..++|....+|..+
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~f---------------------------------------------------- 352 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAF---------------------------------------------------- 352 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHH----------------------------------------------------
Confidence 9999999999999999999877666555
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
T Consensus 353 -------------------------------------------------------------------------------- 352 (611)
T KOG1173|consen 353 -------------------------------------------------------------------------------- 352 (611)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
|..+...|..++|+..|..|-++-|....-...+|.-|.++++++-|.+.|.+++.+.|.+
T Consensus 353 --------------ghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D----- 413 (611)
T KOG1173|consen 353 --------------GHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD----- 413 (611)
T ss_pred --------------hHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-----
Confidence 5555566778888888888888888888888888888888899999999999999998888
Q ss_pred HHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhc
Q 009799 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ 402 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 402 (525)
.-++..+|.+.+..+. |.+|..+|+.++...+. .....+.....+.++|.++.+.
T Consensus 414 --plv~~Elgvvay~~~~----y~~A~~~f~~~l~~ik~-------------------~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 414 --PLVLHELGVVAYTYEE----YPEALKYFQKALEVIKS-------------------VLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred --chhhhhhhheeehHhh----hHHHHHHHHHHHHHhhh-------------------ccccccchhHHHHhHHHHHHHH
Confidence 5667777777777777 88999888888742111 1112223456789999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 403 QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (525)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 467 (525)
+.+++|+..|++++.+.|.++.++..+|.+|..+|+++.|+.+|.+++.+.|++..+-..|+.+.
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999977766666544
No 35
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=8.2e-22 Score=181.78 Aligned_cols=418 Identities=15% Similarity=0.102 Sum_probs=264.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccC--CCCHHHHHHHH-HHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELK--PDWSKGYSRLG-AAH 80 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la-~~~ 80 (525)
.|-.....+...|+|..+.+.|++++...-...+.|+.++.++...|....|+...++.+... |.++..+...+ .|.
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~ 404 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCI 404 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHH
Confidence 344566677888999999999999998888888999999999999999999999999999988 77766665554 555
Q ss_pred hhhhhHHHHHHHHHHhhccCCCc-----HHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCccccc
Q 009799 81 LGLQDYIEAVNSYKKGLDIDPNN-----EALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYL 155 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
...|..++++.+-.+++...... +..+..++.+|...... ...+..+...
T Consensus 405 e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~-------------------------a~~~seR~~~ 459 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ-------------------------ANLKSERDAL 459 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc-------------------------CCChHHHHHH
Confidence 67799999999999999843222 22344444444333211 1111122233
Q ss_pred chHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChh
Q 009799 156 DQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPME 235 (525)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (525)
....+..+.++++.+|.+....+..+-.+.....+. .+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~------------------------------------------sA 497 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLT------------------------------------------SA 497 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHH------------------------------------------HH
Confidence 355666666666667766554433222222222111 11
Q ss_pred hhHHHHHHHH-hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcc
Q 009799 236 LTEEEKEAKE-RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (525)
Q Consensus 236 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 314 (525)
+......+.. ....+.+|..++.++...+++..|+.+.+.++...|+|.........+-...++.++|+..+...+...
T Consensus 498 l~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w 577 (799)
T KOG4162|consen 498 LDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW 577 (799)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 1222233333 334455555555555555555555555555555555555555555555555555555555555555433
Q ss_pred ccChhhHHHH--HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC-------------C------C------------
Q 009799 315 RELRSDFKMI--ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH-------------R------N------------ 361 (525)
Q Consensus 315 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------~------~------------ 361 (525)
....+....+ +......+.......+ ..+|+..+.++.... | .
T Consensus 578 e~~~~~q~~~~~g~~~~lk~~l~la~~q----~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lw 653 (799)
T KOG4162|consen 578 EAEYGVQQTLDEGKLLRLKAGLHLALSQ----PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLW 653 (799)
T ss_pred HhhhhHhhhhhhhhhhhhhcccccCccc----ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHH
Confidence 2211111100 1111111111111222 444444444433311 0 0
Q ss_pred ---hhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 009799 362 ---PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA 438 (525)
Q Consensus 362 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 438 (525)
.+.....+..+++.-++.++....|..+..|+..|.++...|++.+|.+.|..++.++|+++.....+|.++...|+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 11233446667777788888888888888888888888888888888888888888888888888888888888888
Q ss_pred chHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Q 009799 439 MPEGLK--DADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 439 ~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 492 (525)
..-|.. .+..+++++|.++.+|+.+|.++.++|+.++|.++|..++++.+.+|.
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 777777 888888888888888888888888888888888888888888777663
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=179.37 Aligned_cols=430 Identities=15% Similarity=0.119 Sum_probs=300.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCc-----hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 7 AKGNAAFSSGDYEAAVRHFTEAISLSPD-----NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
+.|++++++.+|.+|+++|+.++..-|. ....+.++|..+.+.|+|+.|+..|+.+++..|+.. +-+++..|++
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f 320 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAF 320 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhhe
Confidence 5789999999999999999999999886 246788999999999999999999999999999754 4566778999
Q ss_pred hhhhHHHHHHHHHHhhccC--C------------CcHHHHhhHH-hHHHHHhhcccCCCCCCCCcccccccCchhhhhcc
Q 009799 82 GLQDYIEAVNSYKKGLDID--P------------NNEALKSGLA-DAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLT 146 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~--p------------~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
..|+-++-.+.|++.+.+- | ++.-....+- ..+....+. +..+........ .-.
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~---~ka~aek~i~ta--------~ki 389 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE---NKADAEKAIITA--------AKI 389 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh---hhhhHHHHHHHH--------HHH
Confidence 9999999999999998641 1 1111111111 111111110 000000000000 000
Q ss_pred cCCCcccccchHHHHHHHH----------HHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCC
Q 009799 147 ADPTTRSYLDQDDFRNMMK----------DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPE 216 (525)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (525)
..|.+...+.. ..+.+++ .+....+....+++.+++..++..+.-+.....+. ...+-.... .
T Consensus 390 iapvi~~~fa~-g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~---~saaa~nl~-~-- 462 (840)
T KOG2003|consen 390 IAPVIAPDFAA-GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT---ASAAANNLC-A-- 462 (840)
T ss_pred hccccccchhc-ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh---hHHHhhhhH-H--
Confidence 00100000000 0000111 11111222223333333333333332221110000 000000000 0
Q ss_pred CchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 009799 217 TSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE 296 (525)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 296 (525)
.. --..-..-..+.......+..+..++.++.+.|.+.+..|++++|...|++++..+.....+++++|..+..
T Consensus 463 -----l~-flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~ 536 (840)
T KOG2003|consen 463 -----LR-FLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA 536 (840)
T ss_pred -----HH-HHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH
Confidence 00 000000112233445556667777888899999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh-h-------HHHHh
Q 009799 297 MGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP-D-------TLKKL 368 (525)
Q Consensus 297 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-------~~~~~ 368 (525)
+|+.++|+.+|-+.-.+--++ +.+++.++.+|..+.+ ..+|++++.++....|.. . ++..-
T Consensus 537 ~~~ldeald~f~klh~il~nn-------~evl~qianiye~led----~aqaie~~~q~~slip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNN-------AEVLVQIANIYELLED----PAQAIELLMQANSLIPNDPAILSKLADLYDQE 605 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHhhC----HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc
Confidence 999999999999987766555 7888999999999998 999999999999988763 2 34455
Q ss_pred chHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 009799 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448 (525)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (525)
|+-.+|..++-......|.+.+..-.+|..|....-+++|+.+|+++.-+.|+...-...++.|+.+.|+|..|...|..
T Consensus 606 gdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred cchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 77788999988888899999999999999999999999999999999999998888788899999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 449 CIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 449 al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
.-...|.+.+++..+..+.-.+|-
T Consensus 686 ~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 686 IHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999998887775
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.92 E-value=2.1e-21 Score=181.69 Aligned_cols=302 Identities=11% Similarity=-0.002 Sum_probs=187.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCH-HHHHHHHHHHhh
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS-KGYSRLGAAHLG 82 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 82 (525)
.....|...+..|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3455667777777777777777777777776666666677777777777777777777777666654 345556777777
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
.|+++.|...++.+++..|+++.++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~------------------------------------------------------ 191 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLK------------------------------------------------------ 191 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHH------------------------------------------------------
Confidence 77777777777777777776654433
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
T Consensus 192 -------------------------------------------------------------------------------- 191 (409)
T TIGR00540 192 -------------------------------------------------------------------------------- 191 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHH----HHHHHHHHhcCHHHHHHHHHHHHHccccCh
Q 009799 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLT----NRAAVYLEMGKYEECIKDCDKAVERGRELR 318 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 318 (525)
.++.++...|++++|...+.+..+..+.++.... ....-....+..+++...+.++....|...
T Consensus 192 ------------ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~ 259 (409)
T TIGR00540 192 ------------LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR 259 (409)
T ss_pred ------------HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH
Confidence 2344555566777777777776665433332221 111122334444445556666666555311
Q ss_pred hhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHH--HHHhh
Q 009799 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADE--EREKG 396 (525)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~l~ 396 (525)
... ..++...+..+...|+ +++|...++++++ ..|++... .....
T Consensus 260 ~~~---~~l~~~~a~~l~~~g~----~~~A~~~l~~~l~--------------------------~~pd~~~~~~~~l~~ 306 (409)
T TIGR00540 260 RHN---IALKIALAEHLIDCDD----HDSAQEIIFDGLK--------------------------KLGDDRAISLPLCLP 306 (409)
T ss_pred hCC---HHHHHHHHHHHHHCCC----hHHHHHHHHHHHh--------------------------hCCCcccchhHHHHH
Confidence 000 3455555555555555 7777777777776 34444321 12222
Q ss_pred hHHHhcCChhHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCchHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 397 NEFFKQQKYPEAIQHYTESLRRNPKDP--RTYSNRAACYTKLGAMPEGLKDAD--KCIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
......++.+.+++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ .+++..|+... +..+|.++.+.|+
T Consensus 307 ~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~ 385 (409)
T TIGR00540 307 IPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGD 385 (409)
T ss_pred hhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC
Confidence 223334666777777777777777777 677777777777777777777777 46666676544 4477777777777
Q ss_pred HHHHHHHHHHHhc
Q 009799 473 YDKALETYQEGLK 485 (525)
Q Consensus 473 ~~~A~~~~~~a~~ 485 (525)
.++|.++|++++.
T Consensus 386 ~~~A~~~~~~~l~ 398 (409)
T TIGR00540 386 KAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777654
No 38
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-21 Score=166.56 Aligned_cols=332 Identities=15% Similarity=0.084 Sum_probs=272.3
Q ss_pred HHHhccCCchhHHH---HHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCC
Q 009799 26 TEAISLSPDNHVLY---SNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102 (525)
Q Consensus 26 ~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 102 (525)
..++..+|..++.| ..+|.|+....-+..+..++-.-...-|+|...+..+|.++...|++.+|+..|+++..++|.
T Consensus 185 m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 185 MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 34556666655443 335556666666666677777778888999999999999999999999999999999999999
Q ss_pred cHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHH
Q 009799 103 NEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQR 182 (525)
Q Consensus 103 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (525)
+....-..+.++...|+.++..
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~---------------------------------------------------------- 286 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDS---------------------------------------------------------- 286 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHH----------------------------------------------------------
Confidence 9988888887777766642100
Q ss_pred HHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 009799 183 VMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYK 262 (525)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (525)
.. ...........+.-|+.-|...+.
T Consensus 287 --~L----------------------------------------------------~~~Lf~~~~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 287 --AL----------------------------------------------------MDYLFAKVKYTASHWFVHAQLLYD 312 (564)
T ss_pred --HH----------------------------------------------------HHHHHhhhhcchhhhhhhhhhhhh
Confidence 00 001111122345567777889999
Q ss_pred cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcc
Q 009799 263 KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (525)
Q Consensus 263 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
.+++..|+.+-+++|..+|.+..++...|.++...|+.++|+-.|+.+..+.|.. -++|..+-.+|...++
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~-- 383 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKR-- 383 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhch--
Confidence 9999999999999999999999999999999999999999999999999999977 4666666667777777
Q ss_pred cchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhh-hHHHh-cCChhHHHHHHHHHHhcCC
Q 009799 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKG-NEFFK-QQKYPEAIQHYTESLRRNP 420 (525)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~A~~~~~~al~~~~ 420 (525)
+.+|...-+.++. .-|.++.++..+| .++.. -.--++|.+.+++++++.|
T Consensus 384 --~kEA~~~An~~~~--------------------------~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 384 --FKEANALANWTIR--------------------------LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred --HHHHHHHHHHHHH--------------------------HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence 9999998888888 6677788887776 44443 3346889999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 009799 421 KDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRC 500 (525)
Q Consensus 421 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 500 (525)
....+-..+|.++...|.++.++..+++.+...|+ ...+..+|.++...+.+++|.++|..|+.++|++.....++.+.
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 99999999999999999999999999999999887 46788999999999999999999999999999999999999988
Q ss_pred HHHhhhh
Q 009799 501 VQQINKA 507 (525)
Q Consensus 501 ~~~~~~~ 507 (525)
..+....
T Consensus 515 EK~~~~~ 521 (564)
T KOG1174|consen 515 EKSDDES 521 (564)
T ss_pred HhccCCC
Confidence 8777643
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=2.6e-24 Score=191.70 Aligned_cols=268 Identities=24% Similarity=0.273 Sum_probs=104.8
Q ss_pred cCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHh
Q 009799 31 LSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKS 108 (525)
Q Consensus 31 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 108 (525)
..|. ...+.+|.+++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++....
T Consensus 5 ~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~ 82 (280)
T PF13429_consen 5 FGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4454 23346688888888888888888665544 4778888888888888888888888888888877665443322
Q ss_pred hHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHH
Q 009799 109 GLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALG 188 (525)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (525)
.
T Consensus 83 ~------------------------------------------------------------------------------- 83 (280)
T PF13429_consen 83 R------------------------------------------------------------------------------- 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHH
Q 009799 189 VLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEK 268 (525)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (525)
++.+ ...+++++
T Consensus 84 -------------------------------------------------------------------l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 84 -------------------------------------------------------------------LIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------cccc-cccccccc
Confidence 2222 45677888
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcc--ccChhhHHHHHHHHHHhhhhHHHhhhcccchH
Q 009799 269 AIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG--RELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (525)
Q Consensus 269 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
|+.++.++.+..+ ++..+.....++...++++++...++++.... +.+ ...+...|.++...|+ .+
T Consensus 96 A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~a~~~~~~G~----~~ 163 (280)
T PF13429_consen 96 ALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-------ARFWLALAEIYEQLGD----PD 163 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T--------HHHHHHHHHHHHHCCH----HH
T ss_pred ccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-------HHHHHHHHHHHHHcCC----HH
Confidence 8888877776553 45666677777888888888888888876533 222 4566667777777777 78
Q ss_pred HHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHH
Q 009799 347 PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTY 426 (525)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 426 (525)
+|+..|++++. .+|+++.+...++.++...|+++++...+....+..|+++..|
T Consensus 164 ~A~~~~~~al~--------------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (280)
T PF13429_consen 164 KALRDYRKALE--------------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW 217 (280)
T ss_dssp HHHHHHHHHHH--------------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC
T ss_pred HHHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH
Confidence 88888877777 7778888888888888888888888888888777778888888
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 427 SNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
..+|.++..+|++++|+.+|++++..+|+++.++..+|.++...|+.++|..++++++.
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888888888888888888888888888888888888888888888888888887765
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=3.1e-20 Score=167.99 Aligned_cols=376 Identities=13% Similarity=0.051 Sum_probs=247.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
.|..-+..+...+-++-|+..|..+|+..|.....|...+..-..-|..++-...+++++...|.....|+..+..+...
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 46677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHH
Q 009799 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (525)
|+...|...+..+++.+|++.+.|..-..+.....++ +.+
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~----------------------------------------era 637 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDEL----------------------------------------ERA 637 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccH----------------------------------------HHH
Confidence 8888888888888888888888877665554433222 111
Q ss_pred HHHHhh---CCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHH
Q 009799 164 MKDIQR---NPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (525)
Q Consensus 164 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (525)
...+.. .......+++...+...++.. .+++..+.
T Consensus 638 R~llakar~~sgTeRv~mKs~~~er~ld~~------------------------------------------eeA~rllE 675 (913)
T KOG0495|consen 638 RDLLAKARSISGTERVWMKSANLERYLDNV------------------------------------------EEALRLLE 675 (913)
T ss_pred HHHHHHHhccCCcchhhHHHhHHHHHhhhH------------------------------------------HHHHHHHH
Confidence 111111 112222333333333222211 22333334
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
..++..|.....|+.+|.++.+.++.+.|...|...++..|+.+..|..++.+-...|+.-.|..+++++.-.+|++...
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~l 755 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALL 755 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchh
Confidence 44444444444455555555555555555555555555555555555555554444444455555555554444444322
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
+....+.-. +.|..+.|...+.++++..|++...|..-..+.-
T Consensus 756 wle~Ir~El-------------------------------------R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 756 WLESIRMEL-------------------------------------RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHH-------------------------------------HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence 222222222 2344444444444444477777777776666655
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 009799 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETY 480 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (525)
+-++-..++.. ++....++.++...|..+....+++.|.++|.++++.+|++.++|..+-..+...|.-++-.+.|
T Consensus 799 ~~~rkTks~DA----Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 799 RPQRKTKSIDA----LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred CcccchHHHHH----HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 66665555544 44566788899999999999999999999999999999999999988888999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHH
Q 009799 481 QEGLKHDPQNQELLDGVRRCVQ 502 (525)
Q Consensus 481 ~~a~~~~p~~~~~~~~l~~~~~ 502 (525)
.++....|.+.+.|....+-..
T Consensus 875 ~~c~~~EP~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 875 KKCETAEPTHGELWQAVSKDIK 896 (913)
T ss_pred HHHhccCCCCCcHHHHHhhhHH
Confidence 9999999999988877665443
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=5.2e-24 Score=189.81 Aligned_cols=262 Identities=22% Similarity=0.286 Sum_probs=112.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcc--CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISL--SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
+..|..++..|++++|+..+++.+.. .|+++..|..+|.+...+|+++.|+..|++++..+|.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 46699999999999999999776554 488999999999999999999999999999999999999999999988 799
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHH
Q 009799 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (525)
+++++|+..++++.+..++ +..
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~~--------------------------------------------------------- 112 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PRY--------------------------------------------------------- 112 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccc-cch---------------------------------------------------------
Confidence 9999999999988775432 221
Q ss_pred HHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHH
Q 009799 164 MKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEA 243 (525)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (525)
T Consensus 113 -------------------------------------------------------------------------------- 112 (280)
T PF13429_consen 113 -------------------------------------------------------------------------------- 112 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD--DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
+.....++...++++++...++++.... |.++.++..+|.++.+.|++++|+..++++++.+|++.
T Consensus 113 ---------l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~--- 180 (280)
T PF13429_consen 113 ---------LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP--- 180 (280)
T ss_dssp --------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H---
T ss_pred ---------hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---
Confidence 1223445677889999999999977654 67889999999999999999999999999999999984
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (525)
.+...++.++...|+ ++++...+..... ..|.++..+..+|.++..
T Consensus 181 ----~~~~~l~~~li~~~~----~~~~~~~l~~~~~--------------------------~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 181 ----DARNALAWLLIDMGD----YDEAREALKRLLK--------------------------AAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp ----HHHHHHHHHHCTTCH----HHHHHHHHHHHHH--------------------------H-HTSCCHCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHCCC----hHHHHHHHHHHHH--------------------------HCcCHHHHHHHHHHHhcc
Confidence 445555556666666 8888888877776 557778888999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 402 QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
.|++++|+.+|+++++.+|+++..+..+|.++...|+.++|..++.+++..
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999888753
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.91 E-value=3.8e-21 Score=180.00 Aligned_cols=308 Identities=11% Similarity=0.039 Sum_probs=243.7
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHH
Q 009799 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAA 116 (525)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (525)
......|...+..|+++.|.+.+.++.+..|+....+...|.+...+|+++.|...+.++.+..|++...
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~---------- 154 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL---------- 154 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH----------
Confidence 3345677888899999999999999999999888888999999999999999999999998877765311
Q ss_pred HhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhcc
Q 009799 117 ASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFK 196 (525)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (525)
T Consensus 155 -------------------------------------------------------------------------------- 154 (409)
T TIGR00540 155 -------------------------------------------------------------------------------- 154 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 009799 197 GPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSA 276 (525)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 276 (525)
+....+.++...|+++.|...++++
T Consensus 155 -------------------------------------------------------~~~~~a~l~l~~~~~~~Al~~l~~l 179 (409)
T TIGR00540 155 -------------------------------------------------------VEIARTRILLAQNELHAARHGVDKL 179 (409)
T ss_pred -------------------------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1122367788899999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 009799 277 LELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKAL 356 (525)
Q Consensus 277 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 356 (525)
++..|+++.++..++.++...|++++|.+.+.+..+....++.... .............+. .+++...+..+.
T Consensus 180 ~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~---~l~~~a~~~~l~~~~----~~~~~~~L~~~~ 252 (409)
T TIGR00540 180 LEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA---DLEQKAEIGLLDEAM----ADEGIDGLLNWW 252 (409)
T ss_pred HHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHH----HhcCHHHHHHHH
Confidence 9999999999999999999999999999999999987554433221 111111111112222 344444555555
Q ss_pred hcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHH--HHHHHHHH
Q 009799 357 TEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTY--SNRAACYT 434 (525)
Q Consensus 357 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~ 434 (525)
...|. ..++++..+..+|..+...|++++|.+.++++++..|++.... ........
T Consensus 253 ~~~p~----------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l 310 (409)
T TIGR00540 253 KNQPR----------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL 310 (409)
T ss_pred HHCCH----------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc
Confidence 52221 2336899999999999999999999999999999999887532 33333445
Q ss_pred HcCCchHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHHHHHHH--HHhccCCCCHHHHHHHHHHHHHhhhhccc
Q 009799 435 KLGAMPEGLKDADKCIELDPTFS--KGYTRKGAIQFFLKEYDKALETYQ--EGLKHDPQNQELLDGVRRCVQQINKAGRG 510 (525)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~p~~~~~~~~l~~~~~~~~~~~~a 510 (525)
..++.+.++..++++++.+|+++ .....+|+++.+.|++++|.++|+ .+++..|++.. ...++.++.++|+..++
T Consensus 311 ~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA 389 (409)
T ss_pred CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 56888999999999999999999 889999999999999999999999 68889998766 55999999999999888
Q ss_pred CCChHHHHH
Q 009799 511 ELSPEELKE 519 (525)
Q Consensus 511 ~~~~~~~~~ 519 (525)
....++...
T Consensus 390 ~~~~~~~l~ 398 (409)
T TIGR00540 390 AAMRQDSLG 398 (409)
T ss_pred HHHHHHHHH
Confidence 766665544
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=6.5e-20 Score=165.99 Aligned_cols=377 Identities=14% Similarity=0.066 Sum_probs=270.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC---CchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLS---PDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (525)
.|+..|...-..|-.-.+..+...+|.+. .+.-..|..-+..+.+.+-++-|...|..+++.+|.....|...+..-
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~e 560 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 45555555555555555555555555442 223466777777777777777777777777777777777777777777
Q ss_pred hhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHH
Q 009799 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (525)
...|..++-...+++++...|.....|...+......|+. ..+.
T Consensus 561 k~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv------------------------------------~~ar 604 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDV------------------------------------PAAR 604 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCc------------------------------------HHHH
Confidence 7777777777777777777777777777666665555443 2233
Q ss_pred HHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHH
Q 009799 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (525)
..+..+++.+|++
T Consensus 605 ~il~~af~~~pns------------------------------------------------------------------- 617 (913)
T KOG0495|consen 605 VILDQAFEANPNS------------------------------------------------------------------- 617 (913)
T ss_pred HHHHHHHHhCCCc-------------------------------------------------------------------
Confidence 3344444444443
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
-++|+..-.+.+...+++.|..+|.++....|. ..+|+.-+.+...+++.++|+.+++.+++..|..
T Consensus 618 ---------eeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f--- 684 (913)
T KOG0495|consen 618 ---------EEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDF--- 684 (913)
T ss_pred ---------HHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch---
Confidence 344444455566677778888888877776554 5677777777777788888888888888877776
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh--------HHHHhchHHHHHHHHHHHhhcCCCcHHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD--------TLKKLNEAEKAKKELEQQEIFDPKIADEE 392 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 392 (525)
...|..+|+++..+++ .+.|...|...+...|... +-...|++.+|...++++.-.+|.+...|
T Consensus 685 ----~Kl~lmlGQi~e~~~~----ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 685 ----HKLWLMLGQIEEQMEN----IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLW 756 (913)
T ss_pred ----HHHHHHHhHHHHHHHH----HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH
Confidence 5667777777777777 8888888877777776643 22344666777777777777888888888
Q ss_pred HHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
.....+-.+.|+.+.|...+.++++..|++...|..--.+.-.-++-..+ ..|++....++.++...|..++...+
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks----~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKS----IDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHH----HHHHHhccCCchhHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877776655554444443333 34455567788899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhc
Q 009799 473 YDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAG 508 (525)
Q Consensus 473 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 508 (525)
++.|.++|.++++.+|++.++|..+-+...+.|...
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999888543
No 44
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.6e-21 Score=170.12 Aligned_cols=407 Identities=15% Similarity=0.124 Sum_probs=274.6
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHh
Q 009799 39 YSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (525)
Q Consensus 39 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (525)
....|...+..|+++.|+..|..++.++|.+...+.++..+|..+|+|++|++.-.+.++++|+-+..|..++..+...|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCC
Q 009799 119 ASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGP 198 (525)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (525)
++ +.++..+.+.+..+|++...+....+.........
T Consensus 85 ~~------------------------------------~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~------- 121 (539)
T KOG0548|consen 85 DY------------------------------------EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAAD------- 121 (539)
T ss_pred cH------------------------------------HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhh-------
Confidence 88 77888999999999999888776555551111100
Q ss_pred CCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHH--HHHHHH
Q 009799 199 TGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAI--EHYSSA 276 (525)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~--~~~~~~ 276 (525)
+....|.........+..........+......+...|.....+..--.+.-..|.....- ..+...
T Consensus 122 -----------~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~ 190 (539)
T KOG0548|consen 122 -----------QLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASG 190 (539)
T ss_pred -----------hhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccc
Confidence 0000111111111111111112222333333333334333332222000000000000000 000000
Q ss_pred hh-----cCCC---------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHH
Q 009799 277 LE-----LDDE---------------------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTR 330 (525)
Q Consensus 277 l~-----~~p~---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 330 (525)
+. ..|. -..-.-.+|.......++..|+..|..+++++ ...... ..
T Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~-------~n 262 (539)
T KOG0548|consen 191 IEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYL-------NN 262 (539)
T ss_pred cccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHH-------HH
Confidence 00 0110 01235678888899999999999999999998 654443 44
Q ss_pred hhhhHHHhhhcccchHHHHHHHHHHHhcCCC---------------hhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHh
Q 009799 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRN---------------PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREK 395 (525)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 395 (525)
.+.++...+. +.+.+.....+++.... +..+...++++.++..|.+++.....
T Consensus 263 ~aA~~~e~~~----~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-------- 330 (539)
T KOG0548|consen 263 IAAVYLERGK----YAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-------- 330 (539)
T ss_pred HHHHHHhccH----HHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------
Confidence 4444444444 66666666555553322 12233345555555555554443322
Q ss_pred hhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q 009799 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDK 475 (525)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 475 (525)
..++......++++...+...-++|.-..--...|..++..|+|..|+..|.++|..+|+++..|.++|.||.++|.+..
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 33444445555555555555555665555566779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 476 ALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 476 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
|+...+.+++++|+...++..-+.++..+.++..+...+.+..+
T Consensus 411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998877666554
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=1.8e-21 Score=162.65 Aligned_cols=305 Identities=15% Similarity=0.150 Sum_probs=255.3
Q ss_pred CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHH
Q 009799 32 SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLA 111 (525)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 111 (525)
+|.+..-++.+|..++..|++..|+..|..+++.+|++..+++.+|.+|+.+|+-.-|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 566778899999999999999999999999999999999999999999999999999999999999998875443
Q ss_pred hHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHH
Q 009799 112 DAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLL 191 (525)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (525)
T Consensus 109 -------------------------------------------------------------------------------- 108 (504)
T KOG0624|consen 109 -------------------------------------------------------------------------------- 108 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHH
Q 009799 192 NVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIE 271 (525)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 271 (525)
....|.+++++|.++.|..
T Consensus 109 -------------------------------------------------------------RiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 109 -------------------------------------------------------------RIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred -------------------------------------------------------------HHHhchhhhhcccHHHHHH
Confidence 3345778888999999999
Q ss_pred HHHHHhhcCCCCH---HH------------HHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHH
Q 009799 272 HYSSALELDDEDI---SY------------LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (525)
Q Consensus 272 ~~~~~l~~~p~~~---~~------------~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (525)
-|..++..+|++. ++ +......+...|+...|+.....++++.|=+ +..+...+.+|.
T Consensus 128 DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-------a~l~~~Rakc~i 200 (504)
T KOG0624|consen 128 DFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-------ASLRQARAKCYI 200 (504)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-------hHHHHHHHHHHH
Confidence 9999999999653 22 2223344556789999999999999988866 566667777777
Q ss_pred HhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHH
Q 009799 337 KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (525)
Q Consensus 337 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 416 (525)
..++ ...|+..++.+-+ +..++.+.++.++.+++..|+.+.++...++++
T Consensus 201 ~~~e----~k~AI~Dlk~ask--------------------------Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 201 AEGE----PKKAIHDLKQASK--------------------------LSQDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hcCc----HHHHHHHHHHHHh--------------------------ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7777 8888888888877 788899999999999999999999999999999
Q ss_pred hcCCCCHHHHH------------HHHHHHHHcCCchHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcCHHHHHHHH
Q 009799 417 RRNPKDPRTYS------------NRAACYTKLGAMPEGLKDADKCIELDPTFSK----GYTRKGAIQFFLKEYDKALETY 480 (525)
Q Consensus 417 ~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~ 480 (525)
+++|++-.++- .-+.-....++|.++++..++.++.+|..+. ....+-.|+...|++.+|+...
T Consensus 251 KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 251 KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 99998754331 1233456778899999999999999998544 3445667888899999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 481 QEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 481 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
.+++.++|++.+++...+.++.--..++.|..+++++.+
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999887778877777666654
No 46
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=4.7e-22 Score=177.86 Aligned_cols=244 Identities=13% Similarity=0.170 Sum_probs=213.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhh
Q 009799 254 KEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGT 333 (525)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (525)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..+.++++++|++ -.++..++.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N-------leaLmaLAV 361 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN-------LEALMALAV 361 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc-------HHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999999999999999999999 456666666
Q ss_pred hHHHhhhcccchHHHHHHHHHHHhcCCChhHH---------------HHhchHHHHHHHHHHHhhcCC--CcHHHHHHhh
Q 009799 334 ALVKMAKCSKDYEPAIETFQKALTEHRNPDTL---------------KKLNEAEKAKKELEQQEIFDP--KIADEEREKG 396 (525)
Q Consensus 334 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~ 396 (525)
.|...+. -.+|+.++.+-+...|.-..+ .....+..-.+.|-.+....| .+++++..||
T Consensus 362 SytNeg~----q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 362 SYTNEGL----QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred HHhhhhh----HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 6666666 889999999888766542211 122334455666777777777 7899999999
Q ss_pred hHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH
Q 009799 397 NEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKA 476 (525)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 476 (525)
.+|...|+|++|+.+|+.||...|++..+|+.||-.+..-.+..+|+..|.+|+++.|....+++++|..+..+|.|++|
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCC----------CHHHHHHHHHHHHHhhhhc
Q 009799 477 LETYQEGLKHDPQ----------NQELLDGVRRCVQQINKAG 508 (525)
Q Consensus 477 ~~~~~~a~~~~p~----------~~~~~~~l~~~~~~~~~~~ 508 (525)
+++|-.|+.+.+. +..+|..|..++..+++.+
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 9999999998665 2368999998888888755
No 47
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.90 E-value=8.4e-20 Score=165.38 Aligned_cols=248 Identities=14% Similarity=0.176 Sum_probs=198.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
.+|.++.-.+..++|...++..+.++...|.+++.+...|..+..+|+-++|......++..++.+..+|..+|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHH
Q 009799 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (525)
.+|++|+.+|+.|+.++|+|...+..++.+....++. .+.++.-
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~------------------------------------~~~~~tr 132 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY------------------------------------EGYLETR 132 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh------------------------------------hhHHHHH
Confidence 9999999999999999999999999999999998876 5566666
Q ss_pred HHHHhhCCCchhHHhhHHHHHHHHHHH-------HhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhh
Q 009799 164 MKDIQRNPNNLNLYLKDQRVMQALGVL-------LNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMEL 236 (525)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (525)
...++..|..-..|+..+......+.. ....... .
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~--------------~------------------------ 174 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ--------------N------------------------ 174 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------c------------------------
Confidence 777888888777766544333333322 1111000 0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcccc
Q 009799 237 TEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316 (525)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 316 (525)
.......-...........+....|.+++|++.+..--..--+........|.++..++++++|...+...+..+|+
T Consensus 175 ---~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 175 ---TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 00011223456667777888888899888888877655444455667778899999999999999999999999999
Q ss_pred ChhhHHHHHHHH
Q 009799 317 LRSDFKMIARAL 328 (525)
Q Consensus 317 ~~~~~~~~~~~~ 328 (525)
+...+..+-.++
T Consensus 252 n~~Yy~~l~~~l 263 (700)
T KOG1156|consen 252 NLDYYEGLEKAL 263 (700)
T ss_pred hHHHHHHHHHHH
Confidence 866655444443
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=3.8e-21 Score=186.73 Aligned_cols=193 Identities=10% Similarity=-0.098 Sum_probs=126.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhH
Q 009799 256 AGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTAL 335 (525)
Q Consensus 256 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (525)
+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+... +..++.++
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~-------~~~~~~~~ 416 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA-------GITKLWIT 416 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh-------HHHHHHHH
Confidence 35555666777777777777777777777777777777777777777777777777777775322 22222233
Q ss_pred HHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHH
Q 009799 336 VKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTES 415 (525)
Q Consensus 336 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 415 (525)
+..++ +++|+..+++++.. ..|+.+..+..+|.++...|++++|...+.+.
T Consensus 417 ~~~g~----~eeA~~~~~~~l~~-------------------------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 417 YYHTG----IDDAIRLGDELRSQ-------------------------HLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HhccC----HHHHHHHHHHHHHh-------------------------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 34444 77777777776651 13566777777777777777777777777777
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Q 009799 416 LRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (525)
Q Consensus 416 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (525)
....|.+...+..++..|...|+ .|...+++.++.....+.-......++.-.|+.+.+..+ +++.+.+
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 468 STQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77777777777777777777773 666666665544322222223366677777777777666 6655543
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=3.2e-21 Score=187.30 Aligned_cols=263 Identities=15% Similarity=0.110 Sum_probs=213.7
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhc---------ccHHHHHHHHHHhhccCCCCHHH
Q 009799 5 AKAKGNAAFSS---GDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASL---------HNYADALADAKKTVELKPDWSKG 72 (525)
Q Consensus 5 ~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 72 (525)
++.+|...+.. +.+++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 45556554433 4578999999999999999999999999887644 34889999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcc
Q 009799 73 YSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTR 152 (525)
Q Consensus 73 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
+..+|.++...|++++|+..|+++++++|++..+
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a---------------------------------------------- 374 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADI---------------------------------------------- 374 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----------------------------------------------
Confidence 9999999999999999999999999999987654
Q ss_pred cccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCC
Q 009799 153 SYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (525)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (525)
T Consensus 375 -------------------------------------------------------------------------------- 374 (553)
T PRK12370 375 -------------------------------------------------------------------------------- 374 (553)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 233 PMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..+++++.
T Consensus 375 --------------------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 375 --------------------KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred --------------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345577788889999999999999999999988877778788889999999999999998
Q ss_pred cc-ccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHH
Q 009799 313 RG-RELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADE 391 (525)
Q Consensus 313 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 391 (525)
.. |++ ...+..+|.++...|+ +++|...+.+... ..|.....
T Consensus 435 ~~~p~~-------~~~~~~la~~l~~~G~----~~eA~~~~~~~~~--------------------------~~~~~~~~ 477 (553)
T PRK12370 435 QHLQDN-------PILLSMQVMFLSLKGK----HELARKLTKEIST--------------------------QEITGLIA 477 (553)
T ss_pred hccccC-------HHHHHHHHHHHHhCCC----HHHHHHHHHHhhh--------------------------ccchhHHH
Confidence 75 555 4456667777777777 9999999988877 67777888
Q ss_pred HHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 009799 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD 453 (525)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 453 (525)
...++..+...|+ +|...+++.++.....+......+.++.-.|+-+.+..+ +++.+.+
T Consensus 478 ~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 478 VNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 8889998888884 777777777665443333334488888888888888777 7766553
No 50
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1e-21 Score=175.78 Aligned_cols=262 Identities=16% Similarity=0.188 Sum_probs=191.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 85 (525)
+..|..+++.|+..+|+-.|+.++..+|.+.++|..||.+....++-..|+..+++|++++|+|..++..||.+|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHH
Q 009799 86 YIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMK 165 (525)
Q Consensus 86 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (525)
-.+|+.++.+.+...|........- ..
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~--------~~--------------------------------------------- 395 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAG--------EN--------------------------------------------- 395 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccC--------cc---------------------------------------------
Confidence 9999999999999887653211000 00
Q ss_pred HHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHH
Q 009799 166 DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (525)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (525)
..+...
T Consensus 396 ---~~~~~~----------------------------------------------------------------------- 401 (579)
T KOG1125|consen 396 ---EDFENT----------------------------------------------------------------------- 401 (579)
T ss_pred ---ccccCC-----------------------------------------------------------------------
Confidence 000000
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDD--EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
........+..-.+.|-.+....| .++++...||.+|...|+|++|+.+|+.++...|++
T Consensus 402 ------------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd------ 463 (579)
T KOG1125|consen 402 ------------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND------ 463 (579)
T ss_pred ------------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch------
Confidence 000001122233345555555566 577788888888888888888888888888877777
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (525)
..+|.++|-.+..-.+ .++|+..|+++++ +.|....+++++|..++..|
T Consensus 464 -~~lWNRLGAtLAN~~~----s~EAIsAY~rALq--------------------------LqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 464 -YLLWNRLGATLANGNR----SEEAISAYNRALQ--------------------------LQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred -HHHHHHhhHHhcCCcc----cHHHHHHHHHHHh--------------------------cCCCeeeeehhhhhhhhhhh
Confidence 6667777776666666 7777777777776 66777777777777777777
Q ss_pred ChhHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCchHHH
Q 009799 404 KYPEAIQHYTESLRRNPKD----------PRTYSNRAACYTKLGAMPEGL 443 (525)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~A~ 443 (525)
.|.+|+++|-.+|.+.+.+ -.+|..|-.++...++.+.+.
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 7777777777777665431 135555555555555555443
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.89 E-value=9.4e-20 Score=169.62 Aligned_cols=298 Identities=12% Similarity=0.053 Sum_probs=223.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHH-HHHHHHHHHh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSK-GYSRLGAAHL 81 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~ 81 (525)
...+..|...+..|+|+.|.+...+.-...+.....+...+.+....|+++.|..++.++.+.+|++.. .....+.++.
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 456788999999999999998888876654443344444466669999999999999999999999854 3445599999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
..|+++.|...++++.+.+|+++.+...+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll--------------------------------------------------- 193 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLA--------------------------------------------------- 193 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHH---------------------------------------------------
Confidence 99999999999999999999987665444
Q ss_pred HHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHH
Q 009799 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (525)
T Consensus 194 -------------------------------------------------------------------------------- 193 (398)
T PRK10747 194 -------------------------------------------------------------------------------- 193 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHH--------HHHHHHHHhcCHHHHHHHHHHHHHc
Q 009799 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLT--------NRAAVYLEMGKYEECIKDCDKAVER 313 (525)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~--------~la~~~~~~~~~~~A~~~~~~~l~~ 313 (525)
+.+|...|++++|+..+.++.+..+.++.... .+........+.+.....++..-..
T Consensus 194 ---------------~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~ 258 (398)
T PRK10747 194 ---------------EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK 258 (398)
T ss_pred ---------------HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 45566678999999999988887666544222 1111111222223333333333233
Q ss_pred cccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHH
Q 009799 314 GRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEER 393 (525)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 393 (525)
.|++ +.+....+..+...|+ .++|...++++++. |.++....
T Consensus 259 ~~~~-------~~~~~~~A~~l~~~g~----~~~A~~~L~~~l~~---------------------------~~~~~l~~ 300 (398)
T PRK10747 259 TRHQ-------VALQVAMAEHLIECDD----HDTAQQIILDGLKR---------------------------QYDERLVL 300 (398)
T ss_pred HhCC-------HHHHHHHHHHHHHCCC----HHHHHHHHHHHHhc---------------------------CCCHHHHH
Confidence 3444 4555666666666666 99999999888872 22344333
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 473 (525)
..+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|..+|+++++..|++. .+..++.++...|+.
T Consensus 301 l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKP 377 (398)
T ss_pred HHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCH
Confidence 44443 448999999999999999999999999999999999999999999999999999854 456899999999999
Q ss_pred HHHHHHHHHHhccC
Q 009799 474 DKALETYQEGLKHD 487 (525)
Q Consensus 474 ~~A~~~~~~a~~~~ 487 (525)
++|..+|++++.+.
T Consensus 378 ~~A~~~~~~~l~~~ 391 (398)
T PRK10747 378 EEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998754
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=7.2e-22 Score=163.88 Aligned_cols=275 Identities=13% Similarity=0.122 Sum_probs=211.9
Q ss_pred HHHhcCCHHHHHHHHHHHhccC---Cc-------hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009799 11 AAFSSGDYEAAVRHFTEAISLS---PD-------NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (525)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (525)
.++...+...|-......++.+ |. +.+.-..+|.||+++|-+.+|.+.++..++..| .++.+..++.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 4556666666665555554431 11 234446789999999999999999999988887 678888899999
Q ss_pred hhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHH
Q 009799 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (525)
.+..+...|+..|...++..|.+.......
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~-------------------------------------------------- 296 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQ-------------------------------------------------- 296 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhh--------------------------------------------------
Confidence 999999999999999888888776554443
Q ss_pred HHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHH
Q 009799 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (525)
T Consensus 297 -------------------------------------------------------------------------------- 296 (478)
T KOG1129|consen 297 -------------------------------------------------------------------------------- 296 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
+.++...+++++|.++|+.+++.+|.+.++.-.+|.-|+..++++-|+.+|++++...-.+
T Consensus 297 ----------------ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--- 357 (478)
T KOG1129|consen 297 ----------------ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--- 357 (478)
T ss_pred ----------------HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC---
Confidence 4445556788888899999999998888888888888888888888888888888877766
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
++.+.++|.++..-++ ++-++..|++++..... ...-.++|+++|.+..
T Consensus 358 ----peLf~NigLCC~yaqQ----~D~~L~sf~RAlstat~-----------------------~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 358 ----PELFCNIGLCCLYAQQ----IDLVLPSFQRALSTATQ-----------------------PGQAADVWYNLGFVAV 406 (478)
T ss_pred ----hHHHhhHHHHHHhhcc----hhhhHHHHHHHHhhccC-----------------------cchhhhhhhccceeEE
Confidence 6777778887777777 88888888888774321 2234677888888888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009799 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI 466 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 466 (525)
..|++.-|..+|+-++..++++..+++++|.+-.+.|+.++|..+++.+-...|+-.+..++++.+
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 888888888888888888888888888888888888888888888888888888776666666543
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=162.08 Aligned_cols=246 Identities=14% Similarity=0.101 Sum_probs=223.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 85 (525)
...|.+|++.|-+.+|.+.++.++...|. ++.+..++.+|.+..++..|+..+.+.++..|.+...+...++++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 36799999999999999999999999875 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHH
Q 009799 86 YIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMK 165 (525)
Q Consensus 86 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (525)
+++|.+.|+.+++.+|.+.++...+
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAci------------------------------------------------------- 330 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACI------------------------------------------------------- 330 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeee-------------------------------------------------------
Confidence 9999999999999999987653322
Q ss_pred HHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHH
Q 009799 166 DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (525)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (525)
T Consensus 331 -------------------------------------------------------------------------------- 330 (478)
T KOG1129|consen 331 -------------------------------------------------------------------------------- 330 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
|.-|+-.++++-|+.+|++++.+.-.+++.+.++|.|++..++++-++..|++++....+.... +
T Consensus 331 -----------a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a----a 395 (478)
T KOG1129|consen 331 -----------AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA----A 395 (478)
T ss_pred -----------eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh----h
Confidence 3446667999999999999999999999999999999999999999999999999876543333 8
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
++|+++|.+....|+ +.-|..+|+-++. .++++.++++++|.+-.+.|+.
T Consensus 396 DvWYNlg~vaV~iGD----~nlA~rcfrlaL~--------------------------~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGD----FNLAKRCFRLALT--------------------------SDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred hhhhccceeEEeccc----hHHHHHHHHHHhc--------------------------cCcchHHHHHhHHHHHhhcCch
Confidence 999999999999999 9999999999998 8999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAAC 432 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~ 432 (525)
++|..+++.+-...|+-.+..++++.+
T Consensus 446 ~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHHHHHHHHhhhhCccccccccceeEE
Confidence 999999999999999877777766544
No 54
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.88 E-value=1.1e-20 Score=178.57 Aligned_cols=420 Identities=14% Similarity=0.095 Sum_probs=300.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHH-----hhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAH-----ASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
....+....+.++--+|.+++...-+-....+..+..+ ...++...|+..|-+++.++|....++..+|.+|...
T Consensus 426 ~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~ 505 (1238)
T KOG1127|consen 426 SSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDS 505 (1238)
T ss_pred HHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 33444455555555555555555444333222222222 1233467777888888888888888888888888877
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHH
Q 009799 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (525)
-+...|..+|.+|++++|.+..++...+..+...... +.++...
T Consensus 506 ~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w------------------------------------e~a~~I~ 549 (1238)
T KOG1127|consen 506 DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW------------------------------------EEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH------------------------------------HHHHHHH
Confidence 7778888888888888888888777777777776544 2222222
Q ss_pred HHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHH
Q 009799 164 MKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEA 243 (525)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (525)
...-+..|.......- .. .|. -.....+...++......+
T Consensus 550 l~~~qka~a~~~k~nW----~~-rG~-----------------------------------yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENW----VQ-RGP-----------------------------------YYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHhhhchHHHHHhhh----hh-ccc-----------------------------------cccCccchhhHHHHHHHHh
Confidence 2222222211110000 00 000 0001112345566777888
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHH
Q 009799 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
..+|.....|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|.|.+|+..+...+............
T Consensus 590 R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~g 669 (1238)
T KOG1127|consen 590 RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNG 669 (1238)
T ss_pred cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999987777777778
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC-------hh----------------------------HHHH-
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN-------PD----------------------------TLKK- 367 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~----------------------------~~~~- 367 (525)
++..+.+.+..+...+- ..+|...++++++.... .+ ++..
T Consensus 670 LaE~~ir~akd~~~~gf----~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q 745 (1238)
T KOG1127|consen 670 LAESVIRDAKDSAITGF----QKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQ 745 (1238)
T ss_pred HHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHH
Confidence 88999988888877777 77777777766653211 00 0000
Q ss_pred ---hch------HHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh--------cCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 009799 368 ---LNE------AEKAKKELEQQEIFDPKIADEEREKGNEFFK--------QQKYPEAIQHYTESLRRNPKDPRTYSNRA 430 (525)
Q Consensus 368 ---~~~------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~la 430 (525)
.+. .--+.+++-..++.. ..+..|+++|..|++ +.+...|+.++.+++++..++...|..+|
T Consensus 746 ~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLG 824 (1238)
T KOG1127|consen 746 LEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALG 824 (1238)
T ss_pred HHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 000 011222332222221 225678888888776 33446899999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccc
Q 009799 431 ACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRG 510 (525)
Q Consensus 431 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a 510 (525)
.+ ...|++.-|..+|-+++..+|.+...|.++|.++....+++.|...|.++..++|.|...|.+.+.+...+|+..++
T Consensus 825 Vl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~ 903 (1238)
T KOG1127|consen 825 VL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIER 903 (1238)
T ss_pred Hh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHH
Confidence 98 66699999999999999999999999999999999999999999999999999999999999999999999865443
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.88 E-value=4.6e-20 Score=146.19 Aligned_cols=214 Identities=17% Similarity=0.118 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
....+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.+.|++ +++
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-------GdV 105 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-------GDV 105 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc-------cch
Confidence 4677889999999999999999999999999999999999999999999999999999999999999999 889
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (525)
+.+.|..++..|+ +++|...|.+++... ..+..+..+.++|.|..+.|+++.
T Consensus 106 LNNYG~FLC~qg~----~~eA~q~F~~Al~~P------------------------~Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 106 LNNYGAFLCAQGR----PEEAMQQFERALADP------------------------AYGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred hhhhhHHHHhCCC----hHHHHHHHHHHHhCC------------------------CCCCcchhhhhhHHHHhhcCCchh
Confidence 9999999999999 999999999999833 345667899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Q 009799 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (525)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (525)
|..+|+++++.+|+.+.....++...+..|+|-.|..++++....-+-....+.....+-...|+.+.|-.+=.+.....
T Consensus 158 A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 158 AEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998888778888878888889999999999999999999
Q ss_pred CCCHHHHHH
Q 009799 488 PQNQELLDG 496 (525)
Q Consensus 488 p~~~~~~~~ 496 (525)
|..++....
T Consensus 238 P~s~e~q~f 246 (250)
T COG3063 238 PYSEEYQTF 246 (250)
T ss_pred CCcHHHHhH
Confidence 998876543
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=1.3e-20 Score=167.68 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHhccCC---c-hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHH
Q 009799 16 GDYEAAVRHFTEAISLSP---D-NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVN 91 (525)
Q Consensus 16 g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 91 (525)
+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455667777777775332 2 356677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhccCCCcHH
Q 009799 92 SYKKGLDIDPNNEA 105 (525)
Q Consensus 92 ~~~~al~~~p~~~~ 105 (525)
.|+++++++|++..
T Consensus 120 ~~~~Al~l~P~~~~ 133 (296)
T PRK11189 120 AFDSVLELDPTYNY 133 (296)
T ss_pred HHHHHHHhCCCCHH
Confidence 77777777776543
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=5.3e-20 Score=163.89 Aligned_cols=217 Identities=16% Similarity=0.094 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++ ..+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-------~~a 134 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-------NYA 134 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHH
Confidence 4567789999999999999999999999999999999999999999999999999999999999999998 677
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (525)
+..+|.++...|+ +++|+..|++++. .+|+++.... ...+....+++++
T Consensus 135 ~~~lg~~l~~~g~----~~eA~~~~~~al~--------------------------~~P~~~~~~~-~~~l~~~~~~~~~ 183 (296)
T PRK11189 135 YLNRGIALYYGGR----YELAQDDLLAFYQ--------------------------DDPNDPYRAL-WLYLAESKLDPKQ 183 (296)
T ss_pred HHHHHHHHHHCCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHH-HHHHHHccCCHHH
Confidence 7888888888888 9999999999999 6777763221 1223456788999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 009799 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCI-------ELDPTFSKGYTRKGAIQFFLKEYDKALETY 480 (525)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (525)
|+..+.+++...+.. .|. .+.+...+|+...+ ..++.+. ++.|..+.+|+.+|.++...|++++|+.+|
T Consensus 184 A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 184 AKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred HHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999998877554322 232 46666777877554 2333333 556677889999999999999999999999
Q ss_pred HHHhccCC-CCHHHHHHHHHHHHHhhh
Q 009799 481 QEGLKHDP-QNQELLDGVRRCVQQINK 506 (525)
Q Consensus 481 ~~a~~~~p-~~~~~~~~l~~~~~~~~~ 506 (525)
+++++.+| +..+....+..+....++
T Consensus 260 ~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 260 KLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 99999996 667777766666555444
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=3.4e-19 Score=165.88 Aligned_cols=302 Identities=11% Similarity=0.050 Sum_probs=231.5
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHH-HHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHH
Q 009799 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRL-GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (525)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (525)
...+..|...+..|+++.|.+...+.-+..+ ++..++.+ +.+....|+++.|...|+++.+.+|++....
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~-------- 155 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPV-------- 155 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHH--------
Confidence 3345677788889999999988887666543 34444444 6666999999999999999999888764221
Q ss_pred HHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhc
Q 009799 116 AASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKF 195 (525)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (525)
T Consensus 156 -------------------------------------------------------------------------------- 155 (398)
T PRK10747 156 -------------------------------------------------------------------------------- 155 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009799 196 KGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSS 275 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 275 (525)
....+.++...|+++.|+..+++
T Consensus 156 ---------------------------------------------------------~l~~a~l~l~~g~~~~Al~~l~~ 178 (398)
T PRK10747 156 ---------------------------------------------------------EITRVRIQLARNENHAARHGVDK 178 (398)
T ss_pred ---------------------------------------------------------HHHHHHHHHHCCCHHHHHHHHHH
Confidence 11236778889999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHH-HHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 009799 276 ALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI-ARALTRKGTALVKMAKCSKDYEPAIETFQK 354 (525)
Q Consensus 276 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 354 (525)
+.+..|+++.++..++.+|...|++++|+..+.+..+..+.++.....+ ..++..+..... .......+.+
T Consensus 179 ~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~--------~~~~~~~l~~ 250 (398)
T PRK10747 179 LLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM--------ADQGSEGLKR 250 (398)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH--------HhcCHHHHHH
Confidence 9999999999999999999999999999999999998776543322111 122221111000 1111122222
Q ss_pred HHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009799 355 ALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYT 434 (525)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 434 (525)
..+ ......|+++.+...++..+...|+.++|...++++++. |.++......+.+
T Consensus 251 ~w~----------------------~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l-- 305 (398)
T PRK10747 251 WWK----------------------NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL-- 305 (398)
T ss_pred HHH----------------------hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--
Confidence 222 222256789999999999999999999999999999995 4466555555554
Q ss_pred HcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCCh
Q 009799 435 KLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSP 514 (525)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 514 (525)
..+++++++..+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++...|+..++...+
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Confidence 4499999999999999999999999999999999999999999999999999999765 557999999999988886655
Q ss_pred HHHH
Q 009799 515 EELK 518 (525)
Q Consensus 515 ~~~~ 518 (525)
.+.+
T Consensus 385 ~~~l 388 (398)
T PRK10747 385 RDGL 388 (398)
T ss_pred HHHH
Confidence 5443
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.88 E-value=3.6e-20 Score=146.82 Aligned_cols=204 Identities=20% Similarity=0.173 Sum_probs=174.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
+++...+|..|+..|++..|...++++|+++|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
.+|++++|...|++++. +|...
T Consensus 115 ~qg~~~eA~q~F~~Al~-~P~Y~--------------------------------------------------------- 136 (250)
T COG3063 115 AQGRPEEAMQQFERALA-DPAYG--------------------------------------------------------- 136 (250)
T ss_pred hCCChHHHHHHHHHHHh-CCCCC---------------------------------------------------------
Confidence 99999999999999986 45432
Q ss_pred HHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHH
Q 009799 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (525)
T Consensus 137 -------------------------------------------------------------------------------- 136 (250)
T COG3063 137 -------------------------------------------------------------------------------- 136 (250)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
..+..+.++|.|.++.|+++.|..+|+++++.+|+.+.....++..++..|++-.|..++++.....+-..
T Consensus 137 ------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A--- 207 (250)
T COG3063 137 ------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQA--- 207 (250)
T ss_pred ------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccH---
Confidence 24455778899999999999999999999999999999999999999999999999999999988776553
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCC
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (525)
..+.....+-...|+ -+.+-.+=.+.....|
T Consensus 208 ----~sL~L~iriak~~gd----~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 208 ----ESLLLGIRIAKRLGD----RAAAQRYQAQLQRLFP 238 (250)
T ss_pred ----HHHHHHHHHHHHhcc----HHHHHHHHHHHHHhCC
Confidence 333333333333444 6666555555555333
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=3.6e-19 Score=164.53 Aligned_cols=436 Identities=13% Similarity=0.082 Sum_probs=308.7
Q ss_pred HHHhcCCHHHHHHHHHHHhcc-----CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh
Q 009799 11 AAFSSGDYEAAVRHFTEAISL-----SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (525)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 85 (525)
.+.-..+..+++-..-..+.. -.+++.+|-.+...+..-|++..+.+.|++++...-...+.|+.++.++...|.
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS 372 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc
Confidence 344455555665544333322 225778888999999999999999999999998888888999999999999999
Q ss_pred HHHHHHHHHHhhccC--CCcHHHHhhHHhHHHHH-hhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 86 YIEAVNSYKKGLDID--PNNEALKSGLADAKAAA-SASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 86 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
-..|+...+..+... |.++......+.+.... +.. .+.++-
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~------------------------------------eegldY 416 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV------------------------------------EEGLDY 416 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh------------------------------------hhHHHH
Confidence 999999999999998 77766655554443332 211 233333
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
+.+++...-...... .+......|.-.+....... ..........+.+..+...
T Consensus 417 A~kai~~~~~~~~~l--~~~~~l~lGi~y~~~A~~a~------------------------~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 417 AQKAISLLGGQRSHL--KPRGYLFLGIAYGFQARQAN------------------------LKSERDALHKKSLQALEEA 470 (799)
T ss_pred HHHHHHHhhhhhhhh--hhhHHHHHHHHHHhHhhcCC------------------------ChHHHHHHHHHHHHHHHHH
Confidence 334333221111111 11222222222211110000 0000001123445566677
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL-DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
...++.++.+.+.++..|..+++.+.|..+.+++++. ..+++.+|..++.++...+++.+|+.+.+.+++..|++....
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 7788889999999999999999999999999999999 556789999999999999999999999999999888763322
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC----------hh-------HHHHhchHHHHHHHHHHHhh-
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN----------PD-------TLKKLNEAEKAKKELEQQEI- 383 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~-------~~~~~~~~~~a~~~~~~~~~- 383 (525)
. ....+-...++ .++++......+..-.. .. ......+..++.+.+..+..
T Consensus 551 ~-------~~~~i~~~~~~----~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 551 D-------GKIHIELTFND----REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred h-------hhhhhhhhccc----HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 2 22222222334 77777766665553321 00 00111122222222221111
Q ss_pred ------------------c--CCC-----cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 009799 384 ------------------F--DPK-----IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA 438 (525)
Q Consensus 384 ------------------~--~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 438 (525)
. .|. ....|...+..+...+..++|..++.++-.++|..+..|+..|.++...|+
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence 0 111 124677889999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH--HHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHH
Q 009799 439 MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE--TYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEE 516 (525)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 516 (525)
..+|.+.|..++.++|+++.+...+|.++...|+..-|.. .+..+++++|.++++|+.++.++...|+..+|..-+..
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 9999999999999999999999999999999999888888 99999999999999999999999999998887665544
Q ss_pred HHH
Q 009799 517 LKE 519 (525)
Q Consensus 517 ~~~ 519 (525)
+.+
T Consensus 780 a~q 782 (799)
T KOG4162|consen 780 ALQ 782 (799)
T ss_pred HHh
Confidence 443
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.4e-19 Score=153.63 Aligned_cols=311 Identities=12% Similarity=-0.020 Sum_probs=252.3
Q ss_pred HHHHHHhcCC--HHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh
Q 009799 8 KGNAAFSSGD--YEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (525)
Q Consensus 8 ~g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 85 (525)
++......++ +.-+..++-.-...-|+|...+..+|.|++..|++.+|+..|+++..++|.+..+.-..|.++...|+
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC
Confidence 3344444444 44555566677788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHH
Q 009799 86 YIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMK 165 (525)
Q Consensus 86 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (525)
++.--..-...+.++.....-|+.-+.+.....++ ..++.-..+
T Consensus 282 ~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~------------------------------------~rAL~~~eK 325 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF------------------------------------ERALNFVEK 325 (564)
T ss_pred HhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH------------------------------------HHHHHHHHH
Confidence 99998888888888766666665555444333322 223333334
Q ss_pred HHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHH
Q 009799 166 DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (525)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (525)
.|..+
T Consensus 326 ~I~~~--------------------------------------------------------------------------- 330 (564)
T KOG1174|consen 326 CIDSE--------------------------------------------------------------------------- 330 (564)
T ss_pred HhccC---------------------------------------------------------------------------
Confidence 44444
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
+....++...|..+...++.++|+-.|+.++.+.|...+.|..+..+|...|++.+|.-.-+.+++..|.+ +
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A 402 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------A 402 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------h
Confidence 44566677789999999999999999999999999999999999999999999999999999999998888 5
Q ss_pred HHHHHhh-hhHH-HhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC
Q 009799 326 RALTRKG-TALV-KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (525)
Q Consensus 326 ~~~~~~~-~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (525)
.++...| .++. .-.. -++|.+++++++. ..|....+...++.++...|
T Consensus 403 ~~LtL~g~~V~~~dp~~----rEKAKkf~ek~L~--------------------------~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRM----REKAKKFAEKSLK--------------------------INPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred hhhhhhcceeeccCchh----HHHHHHHHHhhhc--------------------------cCCccHHHHHHHHHHHHhhC
Confidence 5665555 2221 1122 5677777777777 89999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009799 404 KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (525)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 468 (525)
.+..++..+++.+...|+ ...+..+|.++...+.+.+|+.+|..|+.++|++..+.-.+-.+-.
T Consensus 453 ~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred ccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 999999999999999885 5688999999999999999999999999999999877665544433
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.87 E-value=1.4e-19 Score=158.32 Aligned_cols=206 Identities=20% Similarity=0.200 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
..+..+..+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+ ..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~ 101 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-------GDV 101 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999987 456
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (525)
+..+|.++...++ +++|+..+.+++... ..+.....+..+|.++...|++++
T Consensus 102 ~~~~~~~~~~~g~----~~~A~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 102 LNNYGTFLCQQGK----YEQAMQQFEQAIEDP------------------------LYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHHHHHHHHccc----HHHHHHHHHHHHhcc------------------------ccccchHHHHHHHHHHHHcCCHHH
Confidence 6677777777777 999999999998732 234566788889999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Q 009799 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (525)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (525)
|...+.+++...|+++..+..+|.++...|++++|...+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 154 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 154 AEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999989899999999999999999999999988887665
Q ss_pred C
Q 009799 488 P 488 (525)
Q Consensus 488 p 488 (525)
|
T Consensus 234 ~ 234 (234)
T TIGR02521 234 P 234 (234)
T ss_pred c
Confidence 4
No 63
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.87 E-value=1e-18 Score=175.96 Aligned_cols=241 Identities=12% Similarity=0.058 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHH
Q 009799 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELD-DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (525)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (525)
...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++..+ | + ...|
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d-------~~t~ 394 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-N-------LISW 394 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-C-------eeeH
Confidence 3467778888899999999999999998875 55678888999999999999999999998754 3 2 2455
Q ss_pred HHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh---------HHHHhchHHHHHHHHHHHhhcCCC--cHHHHHHhhh
Q 009799 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD---------TLKKLNEAEKAKKELEQQEIFDPK--IADEEREKGN 397 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 397 (525)
..+...|...|+ .++|++.|+++......++ .+...|..++|.++|+.+.+..+- +...|..+..
T Consensus 395 n~lI~~y~~~G~----~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 395 NALIAGYGNHGR----GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred HHHHHHHHHcCC----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 666666666777 9999999999887544332 234668999999999998764332 3457888999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q 009799 398 EFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (525)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 477 (525)
.+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+++.|++...|..++.+|...|++++|.
T Consensus 471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 999999999999998864 2334 56789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc--------------------------CCCCHHHHHHHHHHHHHhhh
Q 009799 478 ETYQEGLKH--------------------------DPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 478 ~~~~~a~~~--------------------------~p~~~~~~~~l~~~~~~~~~ 506 (525)
+.++...+. .|...+++..+..+..++.+
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 999987654 34455677777777777765
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.6e-18 Score=142.03 Aligned_cols=281 Identities=15% Similarity=0.172 Sum_probs=242.6
Q ss_pred HHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhh
Q 009799 40 SNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (525)
Q Consensus 40 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (525)
+..|.-++-.++.++|++.|...++.+|...++.+.+|.++...|..+.|+..-+..+. .|+-+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~-------------- 103 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTF-------------- 103 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCch--------------
Confidence 45677778888999999999999999999999999999999999999999988776654 344321
Q ss_pred cccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCC
Q 009799 120 SFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPT 199 (525)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (525)
T Consensus 104 -------------------------------------------------------------------------------- 103 (389)
T COG2956 104 -------------------------------------------------------------------------------- 103 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q 009799 200 GGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL 279 (525)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 279 (525)
.....+...+|.-|+..|-++.|...|......
T Consensus 104 -----------------------------------------------~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de 136 (389)
T COG2956 104 -----------------------------------------------EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE 136 (389)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Confidence 135566778899999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC
Q 009799 280 DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (525)
Q Consensus 280 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (525)
..--..+...+..+|....+|++|++.-++..++.++.. ...++..|..++..+....+ .+.|+..+.++++
T Consensus 137 ~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq~~~~~~~----~d~A~~~l~kAlq-- 208 (389)
T COG2956 137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQQALASSD----VDRARELLKKALQ-- 208 (389)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHh--
Confidence 767788999999999999999999999999999988753 34568888999888888877 9999999999998
Q ss_pred CChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCC
Q 009799 360 RNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD-PRTYSNRAACYTKLGA 438 (525)
Q Consensus 360 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~ 438 (525)
.+|....+-..+|.+....|+|+.|++.++.+++.+|+. +.+...+..||..+|+
T Consensus 209 ------------------------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 209 ------------------------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred ------------------------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999999986 6788899999999999
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Q 009799 439 MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (525)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 495 (525)
.++....+.++.+..++ +.+...++..-....-.+.|..++.+-+...|+-...+.
T Consensus 265 ~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 265 PAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred HHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 99999999999999887 566677777777777788999999999999998544443
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.86 E-value=1e-16 Score=145.74 Aligned_cols=423 Identities=15% Similarity=0.115 Sum_probs=289.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
.+.+--+|..+...|+-++|......++..++.++.+|..+|.++...++|++|+++|+.|+.+.|+|...|..++.+..
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~ 120 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI 120 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
++++++.....-.+.++..|.....|..++..+...|.+..+ .+-++
T Consensus 121 QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A---------------------------------~~il~ 167 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA---------------------------------LEILE 167 (700)
T ss_pred HHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHH
Confidence 999999999999999999999999999999998888876221 12223
Q ss_pred HHHHHHhhCCCchhHH-----hhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhh
Q 009799 162 NMMKDIQRNPNNLNLY-----LKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMEL 236 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (525)
.+.+.....|+....- +.........+. ...++
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~------------------------------------------~q~al 205 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS------------------------------------------LQKAL 205 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc------------------------------------------HHHHH
Confidence 3333333223221111 101111111110 11222
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHccc
Q 009799 237 TEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECI-KDCDKAVERGR 315 (525)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~~l~~~~ 315 (525)
+.+........+........|.+++..+++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|
T Consensus 206 e~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 206 EHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 22233333334555566678999999999999999999999999999999988888886333444444 55655555555
Q ss_pred cChhhHHHHHHHHHHhhhhHHHhhhcccchHHHH-HHHHHHHhcC-CC-hhHHHHhc-------hHHHHHHHHHHHhhcC
Q 009799 316 ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAI-ETFQKALTEH-RN-PDTLKKLN-------EAEKAKKELEQQEIFD 385 (525)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~-~~-~~~~~~~~-------~~~~a~~~~~~~~~~~ 385 (525)
.. .+-.+++.....-.. +.+.+ .++...++.. |. -..+..+. -.++-+..|...+.-.
T Consensus 286 r~--------e~p~Rlplsvl~~ee----l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 286 RH--------ECPRRLPLSVLNGEE----LKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT 353 (700)
T ss_pred cc--------ccchhccHHHhCcch----hHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccc
Confidence 43 222222222211111 22222 2223333321 10 00111111 1111122222222111
Q ss_pred ------------CCc--HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHh
Q 009799 386 ------------PKI--ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (525)
Q Consensus 386 ------------~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (525)
|-. ...++.++.-+...|+++.|..+++.|+...|.-++.+...|+++...|++++|..++..+.+
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 222 244567888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHHhhhhcccC
Q 009799 452 LDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ---------NQELLDGVRRCVQQINKAGRGE 511 (525)
Q Consensus 452 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---------~~~~~~~l~~~~~~~~~~~~a~ 511 (525)
+|-.+...-..-|....+.++.++|.+...+.-+..-+ .......-+..+.++++.+.|.
T Consensus 434 lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 434 LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 98776666567888889999999999988776554421 1222223455566666665443
No 66
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.85 E-value=9.7e-18 Score=168.95 Aligned_cols=412 Identities=11% Similarity=0.008 Sum_probs=293.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCC--chhHHHHHHHHHHhhcccHHHHHHHHHHhhcc--CCCCHHHHHHHHHHH
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSP--DNHVLYSNRSAAHASLHNYADALADAKKTVEL--KPDWSKGYSRLGAAH 80 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 80 (525)
|......+...|++++|+..|+.+....| -+..++..+..++.+.++++.|...+..+... .| +...+..+..+|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y 168 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMH 168 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 44555667889999999999999876543 35677888888889999999999988887764 45 567788888999
Q ss_pred hhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHH
Q 009799 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (525)
.+.|+++.|...|++..+ | +...|..+...+...|+.. .++
T Consensus 169 ~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~------------------------------------~A~ 209 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYR------------------------------------EAF 209 (697)
T ss_pred hcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHH------------------------------------HHH
Confidence 999999999999998754 3 4456667777777666552 222
Q ss_pred HHHHHHHhhC--CCc-----------------------------------------hhHHhhHHHHHHHHHHHHhhhccC
Q 009799 161 RNMMKDIQRN--PNN-----------------------------------------LNLYLKDQRVMQALGVLLNVKFKG 197 (525)
Q Consensus 161 ~~~~~~~~~~--~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 197 (525)
..+.+..... |+. +..|.+.+.+..+...+..+
T Consensus 210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---- 285 (697)
T PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---- 285 (697)
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----
Confidence 2222221111 100 00111111111111111100
Q ss_pred CCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 009799 198 PTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSAL 277 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 277 (525)
.+.+...|..+...|.+.|++++|+..|++..
T Consensus 286 ------------------------------------------------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 286 ------------------------------------------------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred ------------------------------------------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 11244567778888888888888888888876
Q ss_pred hcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccc-cChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 009799 278 ELD-DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGR-ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKA 355 (525)
Q Consensus 278 ~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 355 (525)
... .-+..++..+...+...|++++|...+..+++... .+ ..++..+...|.+.|+ +++|...|++.
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d-------~~~~~~Li~~y~k~G~----~~~A~~vf~~m 386 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD-------IVANTALVDLYSKWGR----MEDARNVFDRM 386 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC-------eeehHHHHHHHHHCCC----HHHHHHHHHhC
Confidence 542 22456777778888888888888888888877642 22 3445555666666666 99999999887
Q ss_pred HhcCCC-----hhHHHHhchHHHHHHHHHHHhhc--CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCC--CCHHHH
Q 009799 356 LTEHRN-----PDTLKKLNEAEKAKKELEQQEIF--DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP--KDPRTY 426 (525)
Q Consensus 356 ~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~ 426 (525)
...+.. -..+...|+.++|++.|+++... .| +...+..+...+...|..++|..+|+...+..+ .+...|
T Consensus 387 ~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 387 PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 652221 12456678899999999988763 33 355677777888899999999999998876432 245678
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 427 SNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
..+..++.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...+++++++.|++...+..+..++...|+
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 88999999999999999998764 23343 66788999999999999999999999999999999999999999999999
Q ss_pred hcccCCChHHHHHhhh
Q 009799 507 AGRGELSPEELKERQV 522 (525)
Q Consensus 507 ~~~a~~~~~~~~~~~~ 522 (525)
++++....++..++++
T Consensus 544 ~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 544 QAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999887777766654
No 67
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.85 E-value=2.1e-16 Score=161.06 Aligned_cols=385 Identities=11% Similarity=0.058 Sum_probs=271.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCC--chhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSP--DNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+...=..+.+.|++++|+..|+.+...+. .+...+..+...+...|..++|...++.... | +...|..+-..+.+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k 449 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHh
Confidence 34444566788999999999999877653 2334444556667788888999888877654 4 46677788888888
Q ss_pred hhhHHHHHHHHHHhhccCC-CcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDP-NNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
.|+++.|...|+.+.+... .+...+..+...+...|+. +.+..
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v------------------------------------d~A~~ 493 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV------------------------------------DAMFE 493 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH------------------------------------HHHHH
Confidence 8999999999988877543 2455666777777766554 22222
Q ss_pred HHHHHHhh--CCCchhH-------HhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCC
Q 009799 162 NMMKDIQR--NPNNLNL-------YLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (525)
Q Consensus 162 ~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (525)
.+.+.... .|+ ... +.+.+....++..+..+....
T Consensus 494 vf~eM~~~Gv~Pd-vvTynaLI~gy~k~G~~eeAl~lf~~M~~~G----------------------------------- 537 (1060)
T PLN03218 494 VFHEMVNAGVEAN-VHTFGALIDGCARAGQVAKAFGAYGIMRSKN----------------------------------- 537 (1060)
T ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-----------------------------------
Confidence 22222222 122 222 222223333333222221100
Q ss_pred ChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 009799 233 PMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL----DDEDISYLTNRAAVYLEMGKYEECIKDCD 308 (525)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 308 (525)
...+...|..+...+.+.|++++|..+|.++... .|+ ...+..+...|.+.|++++|.+.|+
T Consensus 538 -------------v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 538 -------------VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred -------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0123567888888899999999999999988753 343 5678888889999999999999999
Q ss_pred HHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC--CChh-------HHHHhchHHHHHHHHH
Q 009799 309 KAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH--RNPD-------TLKKLNEAEKAKKELE 379 (525)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~-------~~~~~~~~~~a~~~~~ 379 (525)
.+.+.+.... ...|..+...|.+.|+ +++|+..|.++.... |+.. .+...|++++|.+.+.
T Consensus 604 ~M~e~gi~p~------~~tynsLI~ay~k~G~----~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 604 MIHEYNIKGT------PEVYTIAVNSCSQKGD----WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHcCCCCC------hHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9888653211 3456666666777777 999999999988764 3322 3456788999999999
Q ss_pred HHhhcC-CCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc--CC
Q 009799 380 QQEIFD-PKIADEEREKGNEFFKQQKYPEAIQHYTESLRR--NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL--DP 454 (525)
Q Consensus 380 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p 454 (525)
.+.+.. +.+...+..+...|.+.|++++|..+|++.... .| +...|..+...|.+.|++++|++.|++.... .|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 988754 346678889999999999999999999988653 34 5778999999999999999999999987654 45
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCC
Q 009799 455 TFSKGYTRKGAIQFFLKEYDKALETYQEGLKH--DPQN 490 (525)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~ 490 (525)
+ ...|..+...+.+.|++++|...+.++++. .|+.
T Consensus 753 d-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 753 N-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 4 567777778899999999999999999875 4443
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.85 E-value=7.4e-19 Score=153.67 Aligned_cols=201 Identities=17% Similarity=0.183 Sum_probs=173.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
+..+..+|..++..|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
..|++++|+..|++++...+..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~---------------------------------------------------------- 132 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYP---------------------------------------------------------- 132 (234)
T ss_pred HcccHHHHHHHHHHHHhccccc----------------------------------------------------------
Confidence 9999999999999988642110
Q ss_pred HHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHH
Q 009799 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (525)
T Consensus 133 -------------------------------------------------------------------------------- 132 (234)
T TIGR02521 133 -------------------------------------------------------------------------------- 132 (234)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
.....+..+|.++...|++++|...+.+++..+|+++..+..+|.++...|++++|...+++++...|...
T Consensus 133 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 203 (234)
T TIGR02521 133 ------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA--- 203 (234)
T ss_pred ------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---
Confidence 12233556788999999999999999999999999999999999999999999999999999999877653
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
..+...+.++...++ .++|..+.+.+..
T Consensus 204 ----~~~~~~~~~~~~~~~----~~~a~~~~~~~~~ 231 (234)
T TIGR02521 204 ----ESLWLGIRIARALGD----VAAAQRYGAQLQK 231 (234)
T ss_pred ----HHHHHHHHHHHHHhh----HHHHHHHHHHHHh
Confidence 344455666666666 8999888777655
No 69
>PLN03077 Protein ECB2; Provisional
Probab=99.84 E-value=4.6e-17 Score=168.13 Aligned_cols=448 Identities=10% Similarity=0.007 Sum_probs=278.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHhh
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--KPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 82 (525)
+..+-..|.+.|++++|...|++... .+..+|..+...|.+.|++++|+..|.+.... .|+ ...+..+...+..
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~ 300 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD-LMTITSVISACEL 300 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh
Confidence 34455677888888888888888654 24567888888888888888888888887654 343 3344445555555
Q ss_pred hhhHHHHHHHHHHhhccC-CCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 83 LQDYIEAVNSYKKGLDID-PNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
.|+.+.|.+.+..+.+.. +.+...+..+...+...|+...+......-.. .+...+..+. .........+.++.
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li-~~~~~~g~~~~A~~ 375 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMI-SGYEKNGLPDKALE 375 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHH-HHHHhCCCHHHHHH
Confidence 566666666655555432 22344445555555555443221100000000 0000000000 00000000122333
Q ss_pred HHHHHHh--hCCCchhH------HhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCC
Q 009799 162 NMMKDIQ--RNPNNLNL------YLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEP 233 (525)
Q Consensus 162 ~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (525)
.+..... ..|+.... +...+.+......+..+..
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-------------------------------------- 417 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-------------------------------------- 417 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH--------------------------------------
Confidence 3222211 12332211 1111111111111111100
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Q 009799 234 MELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER 313 (525)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 313 (525)
........++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++....
T Consensus 418 ----------~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 418 ----------KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred ----------hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 00112345677788889999999999999988654 35668888889999999999999999998764
Q ss_pred cccChhhHHHHHHHHHHhh----------------------------hhHHHhhhcccchHHHHHHHHHHHhcCCChh--
Q 009799 314 GRELRSDFKMIARALTRKG----------------------------TALVKMAKCSKDYEPAIETFQKALTEHRNPD-- 363 (525)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 363 (525)
.+.+...+..+..++...| ..|.+.|+ .++|...|+.. .++..
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~----~~~A~~~f~~~---~~d~~s~ 557 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR----MNYAWNQFNSH---EKDVVSW 557 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC----HHHHHHHHHhc---CCChhhH
Confidence 3333333333333332222 45666666 88888888876 33322
Q ss_pred -----HHHHhchHHHHHHHHHHHhhc--CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 009799 364 -----TLKKLNEAEKAKKELEQQEIF--DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP--KDPRTYSNRAACYT 434 (525)
Q Consensus 364 -----~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~ 434 (525)
.+...|+.++|++.|+++.+. .|+ ...+..+-..+.+.|..++|..+|+...+..+ .+...|..+..++.
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 345678999999999988763 444 34455566678889999999999998874432 24578888999999
Q ss_pred HcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCCh
Q 009799 435 KLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSP 514 (525)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 514 (525)
+.|++++|.+.+++. ...|+ +.+|..+-..+...|+.+.+....+++++++|++...+..++.+|...|++.++....
T Consensus 637 r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 637 RAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 999999999998875 35565 6677777778888899999999999999999999999999999999999998887766
Q ss_pred HHHHHhhh
Q 009799 515 EELKERQV 522 (525)
Q Consensus 515 ~~~~~~~~ 522 (525)
+...++++
T Consensus 715 ~~M~~~g~ 722 (857)
T PLN03077 715 KTMRENGL 722 (857)
T ss_pred HHHHHcCC
Confidence 65555543
No 70
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=2.4e-18 Score=152.28 Aligned_cols=223 Identities=12% Similarity=0.066 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMG-KYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
+....++-.+-.++...+.+++|+..+.+++.++|.+..+|..++.++..+| ++++++..+++++..+|++ .
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-------y 106 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-------Y 106 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-------h
Confidence 4556666666667888899999999999999999999999999999999998 6899999999999999998 5
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.+|..++.++..++. ..+++++.+++++++ .+|.+..+|..++.++...|++
T Consensus 107 qaW~~R~~~l~~l~~--~~~~~el~~~~kal~--------------------------~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 107 QIWHHRRWLAEKLGP--DAANKELEFTRKILS--------------------------LDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHhHHHHHHHHHcCc--hhhHHHHHHHHHHHH--------------------------hCcccHHHHHHHHHHHHHhhhH
Confidence 566666665555543 002556666666666 8999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCc----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHH
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKL---GAM----PEGLKDADKCIELDPTFSKGYTRKGAIQFF----LKEYD 474 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ 474 (525)
++|++++.++++.+|.+..+|+.++.+.... |.+ ++++.+..++|..+|++..+|..++.++.. +++..
T Consensus 159 ~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 159 EDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence 9999999999999999999999999998876 333 478888999999999999999999999988 45678
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009799 475 KALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 475 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 504 (525)
+|...+.+++...|+++.++..|+.++..-
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 899999999999999999999999999863
No 71
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.83 E-value=7.9e-16 Score=156.90 Aligned_cols=378 Identities=15% Similarity=0.084 Sum_probs=273.1
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCC-CCHHHHHHHHHHHhhhhhHHHH
Q 009799 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKP-DWSKGYSRLGAAHLGLQDYIEA 89 (525)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A 89 (525)
.+...|..++|...|+.... | +..+|..+-.++.+.|+++.|...++++.+... .+...|..+...|.+.|+.++|
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A 491 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH
Confidence 45677889999998887765 4 467777888888899999999999998887653 2567788888999999999999
Q ss_pred HHHHHHhhccCC-CcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHh
Q 009799 90 VNSYKKGLDIDP-NNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQ 168 (525)
Q Consensus 90 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (525)
...|+++.+... .+...+..+...+...|+. +.++..+.....
T Consensus 492 ~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~------------------------------------eeAl~lf~~M~~ 535 (1060)
T PLN03218 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQV------------------------------------AKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH------------------------------------HHHHHHHHHHHH
Confidence 999998887543 2567777788887777665 223333332222
Q ss_pred --hCCCchh------HHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHH
Q 009799 169 --RNPNNLN------LYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (525)
Q Consensus 169 --~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (525)
..|+... .+...+.+..+...+..+....
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~------------------------------------------- 572 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET------------------------------------------- 572 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-------------------------------------------
Confidence 2233111 1111222222222222211000
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--cccC
Q 009799 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD-DEDISYLTNRAAVYLEMGKYEECIKDCDKAVER--GREL 317 (525)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~ 317 (525)
.... .+...+..+...|.+.|++++|..+|+.+.+.+ +.+...|..+...|.+.|++++|..+|.+.... .|+
T Consensus 573 --~gi~-PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD- 648 (1060)
T PLN03218 573 --HPID-PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD- 648 (1060)
T ss_pred --CCCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Confidence 0001 235678888889999999999999999999876 456789999999999999999999999999876 343
Q ss_pred hhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh---------HHHHhchHHHHHHHHHHHhhc--CC
Q 009799 318 RSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD---------TLKKLNEAEKAKKELEQQEIF--DP 386 (525)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~--~~ 386 (525)
...|..+...+...++ +++|...+..+.+....++ .+.+.|++++|.+.|+.+... .|
T Consensus 649 -------~~TynsLI~a~~k~G~----~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P 717 (1060)
T PLN03218 649 -------EVFFSALVDVAGHAGD----LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717 (1060)
T ss_pred -------HHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 3456666677777777 9999999999998654332 456789999999999998653 34
Q ss_pred CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc--CCCCHHHHHH
Q 009799 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRR--NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL--DPTFSKGYTR 462 (525)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 462 (525)
+...|..+...|.+.|++++|+++|++.... .| +...|..+...+.+.|++++|..++..+++. .|+ ...+..
T Consensus 718 -dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tyns 794 (1060)
T PLN03218 718 -TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRC 794 (1060)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Confidence 5678999999999999999999999998754 34 5677888889999999999999999999876 344 333433
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 463 KGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
+-.++ .+++++|....+..+..++.+
T Consensus 795 LIglc--~~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 795 ITGLC--LRRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred HHHHH--HHHHHHHhhhhhhhhhhhccc
Confidence 32222 246788887777776665543
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.83 E-value=1.3e-17 Score=153.89 Aligned_cols=213 Identities=21% Similarity=0.243 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcccc-Chhh
Q 009799 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALEL--------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE-LRSD 320 (525)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~ 320 (525)
......+|.+|...+++.+|+..|++++.+ +|.-..++.+||.+|...|++++|..++++++++... ....
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 333446899999999999999999999976 3445678999999999999999999999999987554 1223
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhh-cCCCcHHHHHHhhhHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEI-FDPKIADEEREKGNEF 399 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~ 399 (525)
...++..+..++.++..+++ +++|..++++++++.. .+.. .++..+..+.++|.+|
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~----~Eea~~l~q~al~i~~-------------------~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNE----YEEAKKLLQKALKIYL-------------------DAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHH-------------------hhccccchHHHHHHHHHHHHH
Confidence 34457888899999999999 9999999999887422 1111 3456778899999999
Q ss_pred HhcCChhHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc-------CCCCHHHHHHHH
Q 009799 400 FKQQKYPEAIQHYTESLRRN--------PKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL-------DPTFSKGYTRKG 464 (525)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la 464 (525)
..+|++++|.++|++++.+. +.....+..+|..|.+.+.+.+|...|.+++.+ .|+....+.+||
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 99999999999999999764 223567889999999999999999999998876 455667899999
Q ss_pred HHHHHhcCHHHHHHHHHHHhc
Q 009799 465 AIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~a~~ 485 (525)
.+|..+|+++.|+++.++++.
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999985
No 73
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=8.9e-18 Score=148.64 Aligned_cols=92 Identities=11% Similarity=0.037 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----------
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK---------- 471 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------- 471 (525)
++++.+..+++..+|++..+|..++.++.. +++..+|+..+.+++..+|+++.++..++.+|....
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 356666677777777777777777777766 344566777777777777777777777777776532
Q ss_pred --------CHHHHHHHHHHHhccCCCCHHHHHHH
Q 009799 472 --------EYDKALETYQEGLKHDPQNQELLDGV 497 (525)
Q Consensus 472 --------~~~~A~~~~~~a~~~~p~~~~~~~~l 497 (525)
..++|...++..-+.||-....|...
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~ 313 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADPMRRNYWAWR 313 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 23567777777766677665555543
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.2e-15 Score=133.30 Aligned_cols=411 Identities=16% Similarity=0.091 Sum_probs=280.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
++++..-+.+...|+|++|.....+++...|++..+....-.|+.+.++|++|+...++-....-.+ ...+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 4667777888999999999999999999999999999999999999999999996555433222111 222789999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
++..++|+.+++ ..++.+.......+.++.+.+++ +.+++.
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~y------------------------------------dealdi 132 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERY------------------------------------DEALDI 132 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhH------------------------------------HHHHHH
Confidence 999999999998 45666667778888888888777 677788
Q ss_pred HHHHHhhCCCchhHHhhHH--HHHHHHHH-HHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQ--RVMQALGV-LLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEE 239 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (525)
+...+..+.++.+.-.... .+...+.. +.....
T Consensus 133 Y~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~-------------------------------------------- 168 (652)
T KOG2376|consen 133 YQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP-------------------------------------------- 168 (652)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc--------------------------------------------
Confidence 8877776665554433211 11111110 111110
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcC--------CCC-------HHHHHHHHHHHHHhcCHHHHH
Q 009799 240 EKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD--------DED-------ISYLTNRAAVYLEMGKYEECI 304 (525)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------p~~-------~~~~~~la~~~~~~~~~~~A~ 304 (525)
.......+.+++.+.++...|+|.+|++.+++++++. .++ ..+...++.++..+|+..+|.
T Consensus 169 ----~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 169 ----EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred ----CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 0012367789999999999999999999999995431 111 246778999999999999999
Q ss_pred HHHHHHHHccccChhhHHHHHHH------------------------------------------HHHhhhhHHHhhhcc
Q 009799 305 KDCDKAVERGRELRSDFKMIARA------------------------------------------LTRKGTALVKMAKCS 342 (525)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~ 342 (525)
..|...+..+|.+.+.......- +.+.+...+..+.
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk-- 322 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK-- 322 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 99999999888765332111000 0011111111111
Q ss_pred cchHHHHHHHHHHHhcCCChh--------HHHHhchHHHHHHHHHHHhhcCCCc-HHHHHHhhhHHHhcCChhHHHHHHH
Q 009799 343 KDYEPAIETFQKALTEHRNPD--------TLKKLNEAEKAKKELEQQEIFDPKI-ADEEREKGNEFFKQQKYPEAIQHYT 413 (525)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 413 (525)
.+.+.+.....-...|... .......+..+.+.+......+|.. ..+.+.++.+.+.+|+++.|++.+.
T Consensus 323 --~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 --MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred --HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1111111111111111100 1122235777888888888888887 6778889999999999999999998
Q ss_pred HHH--------hcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhcCHHHHHH
Q 009799 414 ESL--------RRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL-------DPTFSKGYTRKGAIQFFLKEYDKALE 478 (525)
Q Consensus 414 ~al--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~ 478 (525)
..+ +.. ..|.+-..+-..+.+.++-+.|...+..++.. .+.....+...+.+..+.|+-++|..
T Consensus 401 ~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 401 LFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 333 221 23444445555667777766666666666643 33334456677788888899999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 479 TYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 479 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
.+++.++.+|++.++...+..++..+.-
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999887753
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=7.6e-16 Score=129.95 Aligned_cols=381 Identities=13% Similarity=0.062 Sum_probs=266.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCchh-HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHH
Q 009799 10 NAAFSSGDYEAAVRHFTEAISLSPDNH-VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIE 88 (525)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 88 (525)
..++...+|..|+..++-.+..+.... ..-..+|.|++.+|+|++|+..|+-+...+.-+.+.+..+|-|++-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 346778899999999998887655433 5667799999999999999999999988776678899999999999999999
Q ss_pred HHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHh
Q 009799 89 AVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQ 168 (525)
Q Consensus 89 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (525)
|...-.++ |+++-....+-.+..+.++. +.+..+...+
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndE-------------------------------------k~~~~fh~~L- 147 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDE-------------------------------------KRILTFHSSL- 147 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcH-------------------------------------HHHHHHHHHH-
Confidence 98877665 56655444444443333221 0011111110
Q ss_pred hCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHH
Q 009799 169 RNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKE 248 (525)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (525)
.+
T Consensus 148 ------------------------------------------------------------------------------qD 149 (557)
T KOG3785|consen 148 ------------------------------------------------------------------------------QD 149 (557)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 12
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (525)
..+-...++.+++..-.|.+|++.|++++.-+|+.......+|.||.++.-|+-+.+.+.-.+...|+++-.....+..+
T Consensus 150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNL 229 (557)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 22334567888888899999999999999999999888999999999999999999999999999999876665555555
Q ss_pred HHhhhhHHHhh-------hcccchHHHHHHHH-----------------HHHhcCCChh-----HHHHhchHHHHHHHHH
Q 009799 329 TRKGTALVKMA-------KCSKDYEPAIETFQ-----------------KALTEHRNPD-----TLKKLNEAEKAKKELE 379 (525)
Q Consensus 329 ~~~~~~~~~~~-------~~~~~~~~A~~~~~-----------------~~~~~~~~~~-----~~~~~~~~~~a~~~~~ 379 (525)
+++-..-.... +....|+.+....+ ..+..-|.+. .+...++..+|....+
T Consensus 230 fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 230 FRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred hhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh
Confidence 54422100000 00001222222222 1111112111 2234567777777666
Q ss_pred HHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHH---hc------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 380 QQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL---RR------NPKDPRTYSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
. .+|..|.-+...|.+....|+--...+.++-+- .+ .-+...-...+|.+++-..++++.+.++...-
T Consensus 310 d---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 310 D---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred h---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 788888888888888888776544443333322 21 11233445667778888888899888888887
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHhhhhcccCCC
Q 009799 451 ELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD-PQNQELLDGVRRCVQQINKAGRGELS 513 (525)
Q Consensus 451 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~ 513 (525)
...-++....+++++.+...|++.+|.+.|-++-... .+.......|++|+..-++..-|+..
T Consensus 387 sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 387 SYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 7777888889999999999999999999998887666 34456677899999999988877754
No 76
>PLN03077 Protein ECB2; Provisional
Probab=99.81 E-value=4.8e-16 Score=160.68 Aligned_cols=202 Identities=13% Similarity=0.080 Sum_probs=161.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC--CChh--
Q 009799 288 TNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH--RNPD-- 363 (525)
Q Consensus 288 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~-- 363 (525)
..+...|.+.|+.++|...|+.. .| + ..+|..+...|...|+ .++|+..|++..... |+..
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~---~~-d-------~~s~n~lI~~~~~~G~----~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH---EK-D-------VVSWNILLTGYVAHGK----GSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc---CC-C-------hhhHHHHHHHHHHcCC----HHHHHHHHHHHHHcCCCCCcccH
Confidence 34557788889999999888876 23 3 3456666666777777 999999999988754 3332
Q ss_pred -----HHHHhchHHHHHHHHHHHhhcCC--CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009799 364 -----TLKKLNEAEKAKKELEQQEIFDP--KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL 436 (525)
Q Consensus 364 -----~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 436 (525)
.+...|.+++|.++|+.+.+..+ -+...|..+...+.+.|++++|.+.+++. ...| ++.+|..+-..+...
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~ 670 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHc
Confidence 34566999999999999885432 24478899999999999999999999885 3555 577888888888889
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------------------------CCCC
Q 009799 437 GAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH--------------------------DPQN 490 (525)
Q Consensus 437 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------------------~p~~ 490 (525)
|+.+.+....+++++++|+++..|..++.+|...|++++|.+..+...+. .|..
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence 99999999999999999999999999999999999999999999887542 3455
Q ss_pred HHHHHHHHHHHHHhhh
Q 009799 491 QELLDGVRRCVQQINK 506 (525)
Q Consensus 491 ~~~~~~l~~~~~~~~~ 506 (525)
.+++..+..+..++.+
T Consensus 751 ~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 751 KEINTVLEGFYEKMKA 766 (857)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6677777777777765
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.81 E-value=3.5e-17 Score=151.06 Aligned_cols=261 Identities=24% Similarity=0.224 Sum_probs=210.3
Q ss_pred CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCc
Q 009799 32 SPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--------KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (525)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 103 (525)
+|.-..+...+|..|...|++++|+..|+.++.. .|.-......+|.+|..++++.+|+..|++++.+--..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5655677788999999999999999999999987 56555566679999999999999999999998752110
Q ss_pred HHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHH
Q 009799 104 EALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRV 183 (525)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (525)
T Consensus 275 -------------------------------------------------------------------------------- 274 (508)
T KOG1840|consen 275 -------------------------------------------------------------------------------- 274 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 009799 184 MQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKK 263 (525)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (525)
.....|..+.++.++|..|...
T Consensus 275 ----------------------------------------------------------~G~~h~~va~~l~nLa~ly~~~ 296 (508)
T KOG1840|consen 275 ----------------------------------------------------------FGEDHPAVAATLNNLAVLYYKQ 296 (508)
T ss_pred ----------------------------------------------------------cCCCCHHHHHHHHHHHHHHhcc
Confidence 0112346778899999999999
Q ss_pred ccHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChh-hHHHHHHHHHHhhhh
Q 009799 264 KEFEKAIEHYSSALELD--------DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS-DFKMIARALTRKGTA 334 (525)
Q Consensus 264 ~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 334 (525)
|++++|..++++++++. |.-...+..++.++..++++++|+.++.+++++..+.+. ....++..+.++|.+
T Consensus 297 GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 297 GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 99999999999999763 233456888899999999999999999999987653322 333668999999999
Q ss_pred HHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHH
Q 009799 335 LVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTE 414 (525)
Q Consensus 335 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 414 (525)
|..+|+ +.+|.+.|++++.+..... -..++.....+..+|..+.+.+++.+|...|.+
T Consensus 377 ~~~~gk----~~ea~~~~k~ai~~~~~~~------------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 377 YLKMGK----YKEAEELYKKAIQILRELL------------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHHhcc----hhHHHHHHHHHHHHHHhcc------------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 999999 9999999999998432210 003455567888999999999999999999999
Q ss_pred HHhc-------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 415 SLRR-------NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 415 al~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
+..+ .|+....+.+||.+|..+|+++.|+++.++++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8765 3444578899999999999999999999998854
No 78
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.1e-14 Score=127.77 Aligned_cols=438 Identities=13% Similarity=0.039 Sum_probs=287.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
.|..-|.--..++++..|...|++||..+..+...|...+.+-++.+....|...+.+|+.+-|.-...|+....+-..+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 45666777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHH
Q 009799 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (525)
|+...|.+.|++-++..|+. .+|.............+.++ ..+
T Consensus 155 gNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR------------------------------------~IY 197 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERAR------------------------------------SIY 197 (677)
T ss_pred cccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHH------------------------------------HHH
Confidence 99999999999999999975 56666666655554432211 111
Q ss_pred HHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHH
Q 009799 164 MKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEA 243 (525)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (525)
.+-+-..|+ +..++..+++....|....... .++.++..+...-..- .--.++.... ..
T Consensus 198 erfV~~HP~-v~~wikyarFE~k~g~~~~aR~-------VyerAie~~~~d~~~e------------~lfvaFA~fE-e~ 256 (677)
T KOG1915|consen 198 ERFVLVHPK-VSNWIKYARFEEKHGNVALARS-------VYERAIEFLGDDEEAE------------ILFVAFAEFE-ER 256 (677)
T ss_pred HHHheeccc-HHHHHHHHHHHHhcCcHHHHHH-------HHHHHHHHhhhHHHHH------------HHHHHHHHHH-HH
Confidence 111112221 2222222221111111000000 0000000000000000 0000000000 00
Q ss_pred HHhHHHHHHHHHHHHHHH-----------------hcccH---HHHH-----HHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 009799 244 KERKEKALKEKEAGNAAY-----------------KKKEF---EKAI-----EHYSSALELDDEDISYLTNRAAVYLEMG 298 (525)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~-----------------~~~~~---~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~~ 298 (525)
...-..+...+..|.-.. +-|+. ++++ -.|++.++.+|.|.++|+..-.+-...|
T Consensus 257 qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence 000111222222221111 12221 2222 2355666778999999999999999999
Q ss_pred CHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHH-hhhcccchHHHHHHHHHHHhcCCChh------------HH
Q 009799 299 KYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK-MAKCSKDYEPAIETFQKALTEHRNPD------------TL 365 (525)
Q Consensus 299 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~ 365 (525)
+.+.-.+.|++++...|.........-.+|.-+..+++. +. .+|.+.+...|+.++++-|... ..
T Consensus 337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle--~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELE--AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 999999999999998876544333223333333333221 11 1338899999999999888743 12
Q ss_pred HHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 009799 366 KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKD 445 (525)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 445 (525)
....++..|.+.+-.++-..|.+. .+.....+-.+.++++....+|++-++..|.+..+|...|.+-..+|+.+.|...
T Consensus 415 IRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 344677888888988888888753 3444456667889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009799 446 ADKCIELDPTFSKGYT--RKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (525)
Q Consensus 446 ~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 503 (525)
|+-|+....-+..-+. .....-...|.++.|...|++.++..+... +|...+.....
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s 552 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEAS 552 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhcc
Confidence 9999987543333333 333445568999999999999999988766 77666665543
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.4e-15 Score=126.86 Aligned_cols=272 Identities=18% Similarity=0.152 Sum_probs=208.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC-----HHHHHHHHHHH
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW-----SKGYSRLGAAH 80 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 80 (525)
+-.|..++-..+.++|++.|-.+++.+|...++.+.+|..+.+.|..+.|+..-+..++ .|+. .-+...+|.=|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 34678888999999999999999999999999999999999999999999998877654 4543 34788999999
Q ss_pred hhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHH
Q 009799 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (525)
+..|-++.|...|....+...--..+...|..+|....++ .+++
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW------------------------------------~KAI 161 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW------------------------------------EKAI 161 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH------------------------------------HHHH
Confidence 9999999999999998876555566777777777777665 4455
Q ss_pred HHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHH
Q 009799 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (525)
+.+.+.....+....
T Consensus 162 d~A~~L~k~~~q~~~----------------------------------------------------------------- 176 (389)
T COG2956 162 DVAERLVKLGGQTYR----------------------------------------------------------------- 176 (389)
T ss_pred HHHHHHHHcCCccch-----------------------------------------------------------------
Confidence 555555544443211
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
..-+..+..++..+....+.+.|...+.++++.+|++..+-..+|.++...|+|..|++.++.+++.+|+..
T Consensus 177 ------~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl-- 248 (389)
T COG2956 177 ------VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL-- 248 (389)
T ss_pred ------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--
Confidence 134566777888888888888888888888888888888888888888888888888888888888887653
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
+.+...+..+|..+|+ .++....+.++.+..+. +.+...++..-.
T Consensus 249 ----~evl~~L~~~Y~~lg~----~~~~~~fL~~~~~~~~g---------------------------~~~~l~l~~lie 293 (389)
T COG2956 249 ----SEVLEMLYECYAQLGK----PAEGLNFLRRAMETNTG---------------------------ADAELMLADLIE 293 (389)
T ss_pred ----HHHHHHHHHHHHHhCC----HHHHHHHHHHHHHccCC---------------------------ccHHHHHHHHHH
Confidence 5666777777777777 88888888888774333 333444445455
Q ss_pred hcCChhHHHHHHHHHHhcCCCC
Q 009799 401 KQQKYPEAIQHYTESLRRNPKD 422 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~ 422 (525)
...-.+.|..++.+-+...|+-
T Consensus 294 ~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 294 LQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HhhChHHHHHHHHHHHhhCCcH
Confidence 5555666777777777777753
No 80
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2e-18 Score=148.27 Aligned_cols=263 Identities=22% Similarity=0.338 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
..+.-....|..++...+|..|+..|..+++..|++...|...+.+++..|++++|.-..++.+.+.|......
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~------ 120 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ------ 120 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc------
Confidence 45566677899999999999999999999999999999999999999999999999999999999999885444
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHH---------------HHHhcCC-----------ChhHHHHhchHHHHHHHHHHH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQ---------------KALTEHR-----------NPDTLKKLNEAEKAKKELEQQ 381 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~---------------~~~~~~~-----------~~~~~~~~~~~~~a~~~~~~~ 381 (525)
.+.+.++...+. ..+|...++ +.+..+. ...++..++++.+|...--..
T Consensus 121 -~r~~~c~~a~~~----~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 121 -LREGQCHLALSD----LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred -cchhhhhhhhHH----HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444444444444 444444333 1111111 123566779999999999999
Q ss_pred hhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCCchHHHHHHHHH
Q 009799 382 EIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP------------RTYSNRAACYTKLGAMPEGLKDADKC 449 (525)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------------~~~~~la~~~~~~~~~~~A~~~~~~a 449 (525)
+++++.+.++.+..|.+++..++.+.|+..|++++.++|+.. ..|-..|.-.++.|++..|.++|..+
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 999999999999999999999999999999999999999863 45777889999999999999999999
Q ss_pred HhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHhh
Q 009799 450 IELDPTF----SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQ 521 (525)
Q Consensus 450 l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 521 (525)
|.++|++ ...|.+++.+...+|+..+|+...+.++.++|....++...+.|+..+++++++..+++++.+..
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999986 45789999999999999999999999999999999999999999999999999998888877754
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.79 E-value=3.5e-17 Score=142.27 Aligned_cols=185 Identities=20% Similarity=0.213 Sum_probs=157.3
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh---HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHH---HHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH---VLYSNRSAAHASLHNYADALADAKKTVELKPDWSK---GYSR 75 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 75 (525)
++.++.+|..++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 46789999999999999999999999999999876 68899999999999999999999999999998876 7899
Q ss_pred HHHHHhhh--------hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhccc
Q 009799 76 LGAAHLGL--------QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTA 147 (525)
Q Consensus 76 la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
+|.++... |++++|+..|++++..+|++...+..+..+....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~------------------------------ 162 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR------------------------------ 162 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH------------------------------
Confidence 99999876 8999999999999999999876654333221111
Q ss_pred CCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCC
Q 009799 148 DPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPES 227 (525)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (525)
T Consensus 163 -------------------------------------------------------------------------------- 162 (235)
T TIGR03302 163 -------------------------------------------------------------------------------- 162 (235)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhcCHHHHH
Q 009799 228 EPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECI 304 (525)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~ 304 (525)
.........+|..++..|++.+|+..+++++...|++ +.+++.+|.++...|++++|.
T Consensus 163 -------------------~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 163 -------------------NRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred -------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 0111223567889999999999999999999997764 589999999999999999999
Q ss_pred HHHHHHHHccc
Q 009799 305 KDCDKAVERGR 315 (525)
Q Consensus 305 ~~~~~~l~~~~ 315 (525)
.+++.+....|
T Consensus 224 ~~~~~l~~~~~ 234 (235)
T TIGR03302 224 DAAAVLGANYP 234 (235)
T ss_pred HHHHHHHhhCC
Confidence 99988877655
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.79 E-value=5.2e-16 Score=147.47 Aligned_cols=431 Identities=13% Similarity=0.089 Sum_probs=282.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC--HHHHHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW--SKGYSRLGAA 79 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 79 (525)
|-++--+|..|...-+...|..+|++|.++||.+..++-..+..|.+..+++.|...+-.+-+..|.. ...|..+|..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 44556666666666677777777777777777777777777777777777777776666555555532 3456778888
Q ss_pred HhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHH
Q 009799 80 HLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDD 159 (525)
Q Consensus 80 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (525)
|...+++..|+..|+.+++.+|.+...|..++.+|...|++ ..+
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry------------------------------------~~A 615 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY------------------------------------SHA 615 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce------------------------------------ehH
Confidence 99999999999999999999999999999999999999887 456
Q ss_pred HHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHH
Q 009799 160 FRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEE 239 (525)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (525)
...+.++...+|.+.-..+..+-.....|.+.+..... .+.+...
T Consensus 616 lKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l-----------------------------------~~ii~~~ 660 (1238)
T KOG1127|consen 616 LKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL-----------------------------------GLIIYAF 660 (1238)
T ss_pred HHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH-----------------------------------HHHHHHH
Confidence 66777778888887776665555544444443222000 0111222
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc-------C-CCCHHHHHHHHHHHHHhcCHH----------
Q 009799 240 EKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL-------D-DEDISYLTNRAAVYLEMGKYE---------- 301 (525)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~-p~~~~~~~~la~~~~~~~~~~---------- 301 (525)
.....-....+..+...+..+...|=+.+|..++++.++. . -++.-.|..+|....-.-..+
T Consensus 661 s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~ 740 (1238)
T KOG1127|consen 661 SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLI 740 (1238)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHH
Confidence 2233334456677777777777778777787777777653 2 233334444443322111111
Q ss_pred -------------------HHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHH----hhhcccchHHHHHHHHHHHhc
Q 009799 302 -------------------ECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK----MAKCSKDYEPAIETFQKALTE 358 (525)
Q Consensus 302 -------------------~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~A~~~~~~~~~~ 358 (525)
-+.+++-..+.+... +..|+++|..|+. .+....+...|+.++.++++.
T Consensus 741 il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~--------~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L 812 (1238)
T KOG1127|consen 741 ILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH--------MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL 812 (1238)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc--------cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 122222222221111 3455666655544 222222356899999999998
Q ss_pred CCChh-------HHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009799 359 HRNPD-------TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAA 431 (525)
Q Consensus 359 ~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 431 (525)
..+.. ++...|.+.-+..+|-+.....|.....|.++|.++....+++.|...|.++..++|.+...|...+.
T Consensus 813 ~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Al 892 (1238)
T KOG1127|consen 813 CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEAL 892 (1238)
T ss_pred hhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHH
Confidence 87754 33445788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCchHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCHHHHHHH----------HHHHhccCCCCHHHHHH
Q 009799 432 CYTKLGAMPEGLKDADKCIELDPT-----FSKGYTRKGAIQFFLKEYDKALET----------YQEGLKHDPQNQELLDG 496 (525)
Q Consensus 432 ~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~----------~~~a~~~~p~~~~~~~~ 496 (525)
+....|+.-++...|....+.+.. ....|..-.......|++++-+.. +++.+.-.|+...++..
T Consensus 893 i~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~ 972 (1238)
T KOG1127|consen 893 IPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAA 972 (1238)
T ss_pred hHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHH
Confidence 988888887777777663333211 122333333444455555443332 23334445666666666
Q ss_pred HHHHHHHhhhhcccC
Q 009799 497 VRRCVQQINKAGRGE 511 (525)
Q Consensus 497 l~~~~~~~~~~~~a~ 511 (525)
.+.++..++.+..+.
T Consensus 973 ~gstlEhL~ey~~a~ 987 (1238)
T KOG1127|consen 973 NGSTLEHLEEYRAAL 987 (1238)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666554443
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.78 E-value=1e-15 Score=142.52 Aligned_cols=316 Identities=12% Similarity=-0.065 Sum_probs=219.6
Q ss_pred CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC---HHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHh
Q 009799 32 SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKS 108 (525)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 108 (525)
+|+.+.++..+|.++...|+.+.+...+.++....|.+ .+.....|.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 78899999999999999999999888888888777654 456777888899999999999999999999998886654
Q ss_pred hHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHH
Q 009799 109 GLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALG 188 (525)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (525)
. +..+...+.... ......+.+..
T Consensus 82 ~-~~~~~~~~~~~~------------------------------------~~~~~~~~l~~------------------- 105 (355)
T cd05804 82 L-HLGAFGLGDFSG------------------------------------MRDHVARVLPL------------------- 105 (355)
T ss_pred H-hHHHHHhccccc------------------------------------CchhHHHHHhc-------------------
Confidence 3 333333322100 00000000000
Q ss_pred HHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHH
Q 009799 189 VLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEK 268 (525)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (525)
.....|.....+..+|.++...|++++
T Consensus 106 -----------------------------------------------------~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 106 -----------------------------------------------------WAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred -----------------------------------------------------cCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 011123455667778999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHH
Q 009799 269 AIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPA 348 (525)
Q Consensus 269 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 348 (525)
|+..++++++..|+++.++..+|.++...|++++|+..+++++...|..+... ...+..++.++...|+ +++|
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~---~~~~~~la~~~~~~G~----~~~A 205 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLR---GHNWWHLALFYLERGD----YEAA 205 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchh---HHHHHHHHHHHHHCCC----HHHH
Confidence 99999999999999999999999999999999999999999999887533222 4566778888888888 9999
Q ss_pred HHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHH--H-HhhhHHHhcCChhHHHHH--H-HHHHhcCCC-
Q 009799 349 IETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEE--R-EKGNEFFKQQKYPEAIQH--Y-TESLRRNPK- 421 (525)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~l~~~~~~~~~~~~A~~~--~-~~al~~~~~- 421 (525)
+..|++++...+.. ...... . .+...+...|....+..+ + .......|.
T Consensus 206 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 261 (355)
T cd05804 206 LAIYDTHIAPSAES------------------------DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDH 261 (355)
T ss_pred HHHHHHHhccccCC------------------------ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcc
Confidence 99999987633211 111100 0 112222333332222222 1 111111121
Q ss_pred -CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Q 009799 422 -DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT---------FSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (525)
Q Consensus 422 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (525)
........+.++...|+.+.|...++........ ........+.++...|++++|+..+..++.+.
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 262 GLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2233346888888999999999999887653221 34566788899999999999999999998764
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.77 E-value=2.5e-14 Score=134.16 Aligned_cols=280 Identities=17% Similarity=0.111 Sum_probs=180.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++.++-+..++...|++++|+..+++....-++...++-.+|.+++++|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46677788899999999999999999888888888999999999999999999999999999999999999988888873
Q ss_pred hhh-----hHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccc
Q 009799 82 GLQ-----DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLD 156 (525)
Q Consensus 82 ~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
... +.+.-...|+......|........-..... |. .+.
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~--g~----------------------------------~F~ 127 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE--GD----------------------------------EFK 127 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC--HH----------------------------------HHH
Confidence 333 4566677788777777765433211110000 00 000
Q ss_pred hHHHHHHHHHHhhC-CCc---hhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCC
Q 009799 157 QDDFRNMMKDIQRN-PNN---LNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (525)
Q Consensus 157 ~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (525)
...-.-+...+... |.- +.....+..-...+..+......... .....+..
T Consensus 128 ~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~----------~~~~~~~~--------------- 182 (517)
T PF12569_consen 128 ERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLE----------SNGSFSNG--------------- 182 (517)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhc----------ccCCCCCc---------------
Confidence 00011111111111 110 01111111111111111111100000 00000000
Q ss_pred ChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 233 PMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
. ...........++++.++..|...|++++|+.+++++|...|..++.+...|.++-..|++.+|...++.+-.
T Consensus 183 ~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 183 D------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred c------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0 0000001134688899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC
Q 009799 313 RGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (525)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (525)
+++.+.-.....+..+.+ .++ .++|...+.......
T Consensus 257 LD~~DRyiNsK~aKy~LR-------a~~----~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 257 LDLADRYINSKCAKYLLR-------AGR----IEEAEKTASLFTRED 292 (517)
T ss_pred CChhhHHHHHHHHHHHHH-------CCC----HHHHHHHHHhhcCCC
Confidence 998874443333444444 444 899988887776544
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.76 E-value=3e-17 Score=128.69 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=118.5
Q ss_pred HHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC
Q 009799 376 KELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (525)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (525)
..++++++.+|++ +..+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3455555577775 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 456 FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
++.+++++|.++...|++++|+..|++++.+.|+++..+...+.+...++.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998877653
No 86
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.2e-13 Score=121.37 Aligned_cols=395 Identities=12% Similarity=0.108 Sum_probs=230.4
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCC
Q 009799 23 RHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102 (525)
Q Consensus 23 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 102 (525)
..|+..|..+--+...|...|.--..++++..|...+++|+..+..+...|+..+.+-++......|...+.+|+.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 34555666666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchh--HHhh-
Q 009799 103 NEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLN--LYLK- 179 (525)
Q Consensus 103 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 179 (525)
-...|.....+...+|+. .++-..+.+-+.-.|+.-. .+.+
T Consensus 140 VdqlWyKY~ymEE~LgNi------------------------------------~gaRqiferW~~w~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNI------------------------------------AGARQIFERWMEWEPDEQAWLSFIKF 183 (677)
T ss_pred HHHHHHHHHHHHHHhccc------------------------------------HHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 999999988888888775 4445555555655664311 1111
Q ss_pred ---HHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHH
Q 009799 180 ---DQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEA 256 (525)
Q Consensus 180 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (525)
......+.+.+.....-. ..+..|...
T Consensus 184 ElRykeieraR~IYerfV~~H--------------------------------------------------P~v~~wiky 213 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLVH--------------------------------------------------PKVSNWIKY 213 (677)
T ss_pred HHHhhHHHHHHHHHHHHheec--------------------------------------------------ccHHHHHHH
Confidence 111111111111111111 245566777
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhh
Q 009799 257 GNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGT 333 (525)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (525)
+..-...|+..-|...|+++++.-.++. ......|..-..+..++.|..+|+-++..-|.+...... .-+...-.
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~--k~~~~fEK 291 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELY--KKYTAFEK 291 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH--HHHHHHHH
Confidence 7777777777777777777777654433 334444555556677777777777777777765321111 11111000
Q ss_pred hHHHhhhcccchHHHHH-----HHHHHHhcCCCh--------hHHHHhchHHHHHHHHHHHhhcCCCcHHH-------HH
Q 009799 334 ALVKMAKCSKDYEPAIE-----TFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPKIADE-------ER 393 (525)
Q Consensus 334 ~~~~~~~~~~~~~~A~~-----~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~ 393 (525)
+.|+ ....++++. -|+..+..+|.. .+....|+.+.-.+.|++++...|...+- |.
T Consensus 292 ---qfGd-~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 292 ---QFGD-KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL 367 (677)
T ss_pred ---Hhcc-hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 0000 000222221 122333333221 01223344445555555555444432111 11
Q ss_pred HhhhHH---HhcCChhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009799 394 EKGNEF---FKQQKYPEAIQHYTESLRRNPKD----PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI 466 (525)
Q Consensus 394 ~l~~~~---~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 466 (525)
.+-.++ +...+.+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+...|.+ ..+-....+
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIel 446 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHH
Confidence 111111 23445555555555555555532 3455555555556666666666666666666552 333334444
Q ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccc
Q 009799 467 QFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRG 510 (525)
Q Consensus 467 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a 510 (525)
-.++++++.....|++.++..|.+-.+|...+.+-..+|+.+.+
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence 55566666666666666666666666666666666666655544
No 87
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2.6e-17 Score=136.54 Aligned_cols=119 Identities=43% Similarity=0.698 Sum_probs=114.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
|+.+...|+.++..++|.+|+..|.+||.++|+++..|.++|.+|.++|.++.|++.++.++.++|.+..+|.++|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhc
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (525)
.+|++++|++.|+++++++|++..++..|..+....++.
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998888887777654
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.3e-14 Score=119.54 Aligned_cols=390 Identities=16% Similarity=0.076 Sum_probs=255.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc--------------C-----
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--------------K----- 66 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~----- 66 (525)
.-.|.+++..|+|++|+..|+-+...+.-+.+.+.++|.|++-+|.|.+|.....++-+. +
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 457899999999999999999999887778899999999999999999999987776432 1
Q ss_pred -------CCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCc
Q 009799 67 -------PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGP 139 (525)
Q Consensus 67 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (525)
.+..+-...+|.++...-.|++|++.|.+++.-+|+.......++.++.+..-+
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy------------------- 201 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY------------------- 201 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh-------------------
Confidence 012234556777777888899999999999999999988888888888877332
Q ss_pred hhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhH-HHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCc
Q 009799 140 EMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKD-QRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETS 218 (525)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (525)
+-..+.+.--+...|+..-...-. ...+..+.
T Consensus 202 -----------------dvsqevl~vYL~q~pdStiA~NLkacn~fRl~n------------------------------ 234 (557)
T KOG3785|consen 202 -----------------DVSQEVLKVYLRQFPDSTIAKNLKACNLFRLIN------------------------------ 234 (557)
T ss_pred -----------------hhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhc------------------------------
Confidence 111122222233444433221110 00000000
Q ss_pred hhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 009799 219 KEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYK-----KKEFEKAIEHYSSALELDDEDISYLTNRAAV 293 (525)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 293 (525)
... ...+.+.-.++...-+..+....+ -.+-+.|+..+-..++.- |++..++...
T Consensus 235 -------------gr~----ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I---PEARlNL~iY 294 (557)
T KOG3785|consen 235 -------------GRT----AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI---PEARLNLIIY 294 (557)
T ss_pred -------------cch----hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC---hHhhhhheee
Confidence 000 011111111111111111111111 122245555555544443 5688899999
Q ss_pred HHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC----------hh
Q 009799 294 YLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN----------PD 363 (525)
Q Consensus 294 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~ 363 (525)
|.++++..+|+..++. ++|..+..+...+.++..+|.-.-.... ..-|...|+-.-..... +.
T Consensus 295 yL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreH----lKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREH----LKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred ecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHH----HHHHHHHHHHhcccccccccccchHHHHH
Confidence 9999999999988765 5787755555445555555543322222 33444444433221111 23
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchHH
Q 009799 364 TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP-KDPRTYSNRAACYTKLGAMPEG 442 (525)
Q Consensus 364 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A 442 (525)
.+....++++.+.+++..-....++....++++......|+|.+|.+.|-+.-...- +.......+|+||...+.++.|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 456667888888888888888888888899999999999999999999987655442 3345557899999999999999
Q ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 443 LKDADKCIELDPTF-SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 443 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
-..+-+. ..|.. ...+-.++...++.+++--|.+.|...-.++|+-
T Consensus 448 W~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 448 WDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 8877542 12322 3345567888889999999999999998898873
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.72 E-value=1.2e-15 Score=132.65 Aligned_cols=203 Identities=15% Similarity=0.064 Sum_probs=148.2
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
...+..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34466778888889989899999999999999888888775 577888899999999999999999999888876543
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
..+++.+|.++.... .......+++++|+..+++++..+|++...+..+..+..
T Consensus 107 ----~~a~~~~g~~~~~~~----------------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~ 160 (235)
T TIGR03302 107 ----DYAYYLRGLSNYNQI----------------------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY 160 (235)
T ss_pred ----HHHHHHHHHHHHHhc----------------------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 345666666543221 112233466777777777777777776554432222111
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHH
Q 009799 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF---SKGYTRKGAIQFFLKEYDKAL 477 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 477 (525)
..+ . .......+|.++...|++.+|+..+++++...|+. +.+++.+|.++..+|++++|.
T Consensus 161 ~~~----~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 161 LRN----R-------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHH----H-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 000 0 01223578889999999999999999999987654 579999999999999999999
Q ss_pred HHHHHHhccCCC
Q 009799 478 ETYQEGLKHDPQ 489 (525)
Q Consensus 478 ~~~~~a~~~~p~ 489 (525)
.+++.+....|+
T Consensus 224 ~~~~~l~~~~~~ 235 (235)
T TIGR03302 224 DAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHhhCCC
Confidence 999888777664
No 90
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=5.4e-16 Score=128.77 Aligned_cols=120 Identities=33% Similarity=0.672 Sum_probs=115.0
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 468 (525)
++-+-.-|.-++..++|++|+..|.+||+++|.++..|.+.|.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhc
Q 009799 469 FLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAG 508 (525)
Q Consensus 469 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 508 (525)
.+|++++|++.|+++++++|+|...+..|..+...+++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999998766
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=8.9e-16 Score=120.38 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
.+...|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHH
Q 009799 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (525)
|++++|+..|+++++..|+++..+..++.+....
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999998888776655
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.68 E-value=3.9e-15 Score=123.27 Aligned_cols=127 Identities=18% Similarity=0.270 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--chHHHHHHH
Q 009799 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACY-TKLGA--MPEGLKDAD 447 (525)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~--~~~A~~~~~ 447 (525)
.++++..+++.+..+|+++..|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|...++
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 344444445555599999999999999999999999999999999999999999999999975 67787 599999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009799 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (525)
Q Consensus 448 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 497 (525)
++++.+|+++.+++.+|.+++..|++++|+.+|+++++++|.+..-...+
T Consensus 135 ~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 135 KALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999999999999999999999999999999999999998876544444
No 93
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.68 E-value=5.8e-15 Score=127.18 Aligned_cols=319 Identities=19% Similarity=0.206 Sum_probs=211.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh----HHHHHHHHHHhhcccHHHHHHHHHHhhcc------CCCCHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH----VLYSNRSAAHASLHNYADALADAKKTVEL------KPDWSKGY 73 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~ 73 (525)
.+-..|.-+++.|++...+.+|+.+++....+. .+|..+|.+|+.+++|++|+++-.--+.+ .-....+-
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 355678999999999999999999999877654 56788999999999999999875433322 22234566
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhccCCC------cHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhccc
Q 009799 74 SRLGAAHLGLQDYIEAVNSYKKGLDIDPN------NEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTA 147 (525)
Q Consensus 74 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
-++|..+.-+|.|++|+.+..+-+.+... ...+++.++.+|...|+.....
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----------------------- 155 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----------------------- 155 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC-----------------------
Confidence 78999999999999999998876654211 1123334444433333321000
Q ss_pred CCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCC
Q 009799 148 DPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPES 227 (525)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (525)
T Consensus 156 -------------------------------------------------------------------------------- 155 (639)
T KOG1130|consen 156 -------------------------------------------------------------------------------- 155 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhcCHH
Q 009799 228 EPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE------DISYLTNRAAVYLEMGKYE 301 (525)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~ 301 (525)
.|+... ..+. --...++.|.++|..-+++... ...++-++|..|+-+|+|+
T Consensus 156 ----~pee~g-------~f~~------------ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~ 212 (639)
T KOG1130|consen 156 ----APEEKG-------AFNA------------EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFD 212 (639)
T ss_pred ----Chhhcc-------cccH------------HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHH
Confidence 000000 0000 0012244556666655554322 2356778888899999999
Q ss_pred HHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHH
Q 009799 302 ECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQ 381 (525)
Q Consensus 302 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 381 (525)
.|+..-+.-+.+.....+. ...-+++.++|+++..+++ ++.|+++|+..+.+.. .+|
T Consensus 213 ~ai~~H~~RL~ia~efGDr-AaeRRA~sNlgN~hiflg~----fe~A~ehYK~tl~LAi------elg------------ 269 (639)
T KOG1130|consen 213 QAIHFHKLRLEIAQEFGDR-AAERRAHSNLGNCHIFLGN----FELAIEHYKLTLNLAI------ELG------------ 269 (639)
T ss_pred HHHHHHHHHHHHHHHhhhH-HHHHHhhcccchhhhhhcc----cHhHHHHHHHHHHHHH------Hhc------------
Confidence 9999888877766554322 2225788889999999999 9999999998876211 111
Q ss_pred hhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC--
Q 009799 382 EIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP------KDPRTYSNRAACYTKLGAMPEGLKDADKCIELD-- 453 (525)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 453 (525)
.....+...+.+|+.|.-..++++||.++.+-+.+.. ....+++.+|..+..+|..++|+.+.+..+++.
T Consensus 270 --~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 270 --NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred --chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 1122345667889999999999999999988776533 245678889999999999999998888777652
Q ss_pred ---CC-CHHHHHHHHHHHHHhcCH
Q 009799 454 ---PT-FSKGYTRKGAIQFFLKEY 473 (525)
Q Consensus 454 ---p~-~~~~~~~la~~~~~~g~~ 473 (525)
|. ...+..++...-...|..
T Consensus 348 v~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 348 VNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred hCCcchhhhhhhhhHHHHHHhCCC
Confidence 22 234555666655555553
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=3.9e-14 Score=131.85 Aligned_cols=210 Identities=12% Similarity=0.017 Sum_probs=169.7
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
+|+.+.++..+|.++...|+++.+...+.++....|.+ .......+.++...|++++|...+++++..+|++....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~- 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL- 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH-
Confidence 45678889999999999999999999999988887754 45677889999999999999999999999999875332
Q ss_pred HHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhc
Q 009799 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ 402 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 402 (525)
.. +..+...+...+....+...+..... .+|........+|.++...
T Consensus 81 ------~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------------~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 81 ------KL-HLGAFGLGDFSGMRDHVARVLPLWAP--------------------------ENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred ------HH-hHHHHHhcccccCchhHHHHHhccCc--------------------------CCCCcHHHHHHHHHHHHHc
Confidence 21 33333333311113333333332111 5778888888999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcCHHHHHH
Q 009799 403 QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS----KGYTRKGAIQFFLKEYDKALE 478 (525)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~ 478 (525)
|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|..+ ..+..+|.++...|++++|+.
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877433 356789999999999999999
Q ss_pred HHHHHhccCCC
Q 009799 479 TYQEGLKHDPQ 489 (525)
Q Consensus 479 ~~~~a~~~~p~ 489 (525)
.|++++...|.
T Consensus 208 ~~~~~~~~~~~ 218 (355)
T cd05804 208 IYDTHIAPSAE 218 (355)
T ss_pred HHHHHhccccC
Confidence 99999877773
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.66 E-value=5.4e-13 Score=125.31 Aligned_cols=316 Identities=16% Similarity=0.114 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHH
Q 009799 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (525)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (525)
+.+++.....++...|++++|++.+++....-++....+-.+|.++.++|++++|...|...++.+|+|...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 46788889999999999999999999998888999999999999999999999999999999999999999999888876
Q ss_pred HHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhH------HhhHHHHHHHHH
Q 009799 115 AAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNL------YLKDQRVMQALG 188 (525)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 188 (525)
....... .. -.......+.+.....|..... +.....+...+.
T Consensus 83 g~~~~~~-----~~--------------------------~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~ 131 (517)
T PF12569_consen 83 GLQLQLS-----DE--------------------------DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLD 131 (517)
T ss_pred hhhcccc-----cc--------------------------cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHH
Confidence 4432100 00 0011111122222233322111 111122222222
Q ss_pred HHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHH
Q 009799 189 VLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEK 268 (525)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (525)
.+......- .-|..+..+.. +-.++....+...+..-+...-....
T Consensus 132 ~yl~~~l~K---------------------------------gvPslF~~lk~-Ly~d~~K~~~i~~l~~~~~~~l~~~~ 177 (517)
T PF12569_consen 132 EYLRPQLRK---------------------------------GVPSLFSNLKP-LYKDPEKAAIIESLVEEYVNSLESNG 177 (517)
T ss_pred HHHHHHHhc---------------------------------CCchHHHHHHH-HHcChhHHHHHHHHHHHHHHhhcccC
Confidence 221111000 00111111111 11122233333333322222111110
Q ss_pred HHHHHHHHhhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHH
Q 009799 269 AIEHYSSALELDDED-ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEP 347 (525)
Q Consensus 269 A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (525)
............|.. .++++.+|..|...|++++|+.+++++|...|.. .+.|+..|.++...|+ +.+
T Consensus 178 ~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-------~ely~~KarilKh~G~----~~~ 246 (517)
T PF12569_consen 178 SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-------VELYMTKARILKHAGD----LKE 246 (517)
T ss_pred CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHCCC----HHH
Confidence 000000000111221 3567889999999999999999999999999998 6777888888888888 999
Q ss_pred HHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCC--CC---
Q 009799 348 AIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP--KD--- 422 (525)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~--- 422 (525)
|...++.+-. +++.+-.+....+..+.+.|+.++|.+.+......+. ..
T Consensus 247 Aa~~~~~Ar~--------------------------LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 247 AAEAMDEARE--------------------------LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred HHHHHHHHHh--------------------------CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 9999999988 6667777777777888888888888888776654431 11
Q ss_pred ----HHHHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 423 ----PRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 423 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
.+.....|.+|.+.|++..|++.|..+.+.
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 233456788888888888888888877765
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.66 E-value=1.6e-13 Score=134.61 Aligned_cols=287 Identities=13% Similarity=0.052 Sum_probs=207.5
Q ss_pred hccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHh
Q 009799 29 ISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKS 108 (525)
Q Consensus 29 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 108 (525)
...+|.+..++..+...+...|++++|+..++.+++.+|+....++.+|.++...+++.+|.-. .++...+.+... .
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~ 100 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-A 100 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-h
Confidence 3568889999999999999999999999999999999999999999999999999998888777 777666655322 1
Q ss_pred hHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHH
Q 009799 109 GLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALG 188 (525)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (525)
....++..
T Consensus 101 ~ve~~~~~------------------------------------------------------------------------ 108 (906)
T PRK14720 101 IVEHICDK------------------------------------------------------------------------ 108 (906)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111111
Q ss_pred HHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHH
Q 009799 189 VLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEK 268 (525)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (525)
+...+.+-.+++.+|.+|-+.|++++
T Consensus 109 ------------------------------------------------------i~~~~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 109 ------------------------------------------------------ILLYGENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred ------------------------------------------------------HHhhhhhhHHHHHHHHHHHHcCChHH
Confidence 11122455588899999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHH
Q 009799 269 AIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPA 348 (525)
Q Consensus 269 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 348 (525)
|...|+++++.+|+++.++.++|..|... +.++|+.++.+++.. +...++ +..+
T Consensus 135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------------~i~~kq----~~~~ 188 (906)
T PRK14720 135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------------FIKKKQ----YVGI 188 (906)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------------HHhhhc----chHH
Confidence 99999999999999999999999999999 999999999999874 222223 8888
Q ss_pred HHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhc--CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHH
Q 009799 349 IETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIF--DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTY 426 (525)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 426 (525)
..+..+.+...+...-. -....++.... .......+.-+=..|...++|++++.+++.+++.+|+|..+.
T Consensus 189 ~e~W~k~~~~~~~d~d~--------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDF--------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred HHHHHHHHhcCcccchH--------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 88888888865552210 01111111111 122334455556777888889999999999999999988888
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Q 009799 427 SNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 492 (525)
..++.||. +.|.. ...++..+++.. +--...++..|+..|++.+..+|.+-.
T Consensus 261 ~~l~~~y~--~kY~~-~~~~ee~l~~s~-----------l~~~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 261 EELIRFYK--EKYKD-HSLLEDYLKMSD-----------IGNNRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred HHHHHHHH--HHccC-cchHHHHHHHhc-----------cccCCccHHHHHHHHHHHeeecCCCEE
Confidence 88888888 44544 555555554421 111124567888888888888877643
No 97
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=8.4e-14 Score=112.40 Aligned_cols=210 Identities=20% Similarity=0.211 Sum_probs=146.8
Q ss_pred ccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHH
Q 009799 264 KEFEKAIEHYSSALEL------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK 337 (525)
Q Consensus 264 ~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (525)
.+.++-+++....+.. .|+...++-....+....|+.+-|..++++.....|++... -...|..+..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV-------~~lkam~lEa 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRV-------GKLKAMLLEA 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhH-------HHHHHHHHHH
Confidence 3445555555554432 23334455556666677788888888888877777776433 3333333444
Q ss_pred hhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHh
Q 009799 338 MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (525)
Q Consensus 338 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 417 (525)
.+. +++|+++|+..++ .+|.+...+...--+...+|+.-+|++.+...++
T Consensus 99 ~~~----~~~A~e~y~~lL~--------------------------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 99 TGN----YKEAIEYYESLLE--------------------------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred hhc----hhhHHHHHHHHhc--------------------------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 444 7777777777777 6677776766666667777877788888888888
Q ss_pred cCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHhccCCCCHHHH
Q 009799 418 RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK---EYDKALETYQEGLKHDPQNQELL 494 (525)
Q Consensus 418 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~~ 494 (525)
..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+| +++-|.++|.++++++|.+..++
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 888888888888888888888888888888888888888888888888777665 46678888888888888777777
Q ss_pred HHHHHHHHHhhhhccc
Q 009799 495 DGVRRCVQQINKAGRG 510 (525)
Q Consensus 495 ~~l~~~~~~~~~~~~a 510 (525)
.++..+-..+-+..++
T Consensus 229 ~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 229 FGIYLCGSALAQISKA 244 (289)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 7777766655544333
No 98
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=4.9e-12 Score=109.37 Aligned_cols=118 Identities=16% Similarity=0.079 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCC-CHHHHHHHHHHHh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD-WSKGYSRLGAAHL 81 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 81 (525)
......|..-+..|+|.+|.+...+.-+..+....++..-+.+--++|+++.|-.++.++-+..++ .......++.+..
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 445677888899999999999999999888888888888999999999999999999999999554 4567888999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhc
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (525)
..|+++.|.....++++..|.++.+.....++|...|.+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 999999999999999999999999999999999888775
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.65 E-value=6.3e-15 Score=115.85 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=117.3
Q ss_pred HHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC
Q 009799 377 ELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (525)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (525)
.+++++..+|.+......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|..++++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009799 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (525)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 503 (525)
+..++.+|.++...|++++|+..|+++++++|++.........+...
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999998866655555443
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=8.7e-12 Score=107.84 Aligned_cols=131 Identities=13% Similarity=0.105 Sum_probs=108.6
Q ss_pred HHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhh
Q 009799 40 SNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (525)
Q Consensus 40 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (525)
..-|..-+..|+|.+|.....+.-+-.+.-.-++..-+.+-..+|+++.|-.++.++-+..+++.
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~--------------- 152 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT--------------- 152 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch---------------
Confidence 34455667778999999999998887777777788888888899999999999988888755432
Q ss_pred cccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCC
Q 009799 120 SFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPT 199 (525)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (525)
T Consensus 153 -------------------------------------------------------------------------------- 152 (400)
T COG3071 153 -------------------------------------------------------------------------------- 152 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q 009799 200 GGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL 279 (525)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 279 (525)
.......+.+....|+++.|..-..++++.
T Consensus 153 --------------------------------------------------l~v~ltrarlll~~~d~~aA~~~v~~ll~~ 182 (400)
T COG3071 153 --------------------------------------------------LAVELTRARLLLNRRDYPAARENVDQLLEM 182 (400)
T ss_pred --------------------------------------------------HHHHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 223345577788899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccc
Q 009799 280 DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGR 315 (525)
Q Consensus 280 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 315 (525)
.|.++.+......+|...|++.+...++.+.-+..-
T Consensus 183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999998877543
No 101
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.62 E-value=2.4e-14 Score=109.10 Aligned_cols=121 Identities=7% Similarity=0.031 Sum_probs=109.5
Q ss_pred cC-CCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHH
Q 009799 384 FD-PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTR 462 (525)
Q Consensus 384 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 462 (525)
+. ++..+..+.+|..++..|++++|...|+-+...+|.++..|++||.|+..+|++.+|+..|.+++.++|+++.++++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 66 78888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHHh
Q 009799 463 KGAIQFFLKEYDKALETYQEGLKHD---PQNQELLDGVRRCVQQI 504 (525)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~l~~~~~~~ 504 (525)
+|.|++..|+.+.|.+.|+.++... |.+..+...-...+..+
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999886 55555555444444444
No 102
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.61 E-value=3.6e-14 Score=122.38 Aligned_cols=236 Identities=18% Similarity=0.169 Sum_probs=170.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHHHhcC--------------------HHHHHHH
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELDD------EDISYLTNRAAVYLEMGK--------------------YEECIKD 306 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~~~--------------------~~~A~~~ 306 (525)
.-++|..+--.|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|.++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 34567788888888888888877665432 235678888888887664 3445555
Q ss_pred HHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCC
Q 009799 307 CDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP 386 (525)
Q Consensus 307 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 386 (525)
|..-+++.... ......++++-++|+.|+-+|+ |+.|+..-+.-+.+.. ++=.+ .
T Consensus 178 y~eNL~l~~~l-gDr~aqGRa~GnLGNTyYlLGd----f~~ai~~H~~RL~ia~---------------efGDr-----A 232 (639)
T KOG1130|consen 178 YMENLELSEKL-GDRLAQGRAYGNLGNTYYLLGD----FDQAIHFHKLRLEIAQ---------------EFGDR-----A 232 (639)
T ss_pred HHHHHHHHHHh-hhHHhhcchhcccCceeeeecc----HHHHHHHHHHHHHHHH---------------HhhhH-----H
Confidence 55555544332 2233347888999999999999 9999988776655211 11111 1
Q ss_pred CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC------C
Q 009799 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRN----P--KDPRTYSNRAACYTKLGAMPEGLKDADKCIELD------P 454 (525)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p 454 (525)
..-.++.++|+++.-.|+++.|+++|+..+.+. . ..+...+.+|..|.-..++++|+.++++-+.+. .
T Consensus 233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 123577899999999999999999999876542 2 235677899999999999999999999977663 2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc-----CCC-CHHHHHHHHHHHHHhhhhcccCCC
Q 009799 455 TFSKGYTRKGAIQFFLKEYDKALETYQEGLKH-----DPQ-NQELLDGVRRCVQQINKAGRGELS 513 (525)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~-~~~~~~~l~~~~~~~~~~~~a~~~ 513 (525)
....+++.+|..+..+|..++|+.+.++.+++ +|. ...+..++......+|....-...
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~ 377 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDD 377 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCc
Confidence 34678999999999999999999988888765 333 346777888888888876553333
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.2e-11 Score=111.98 Aligned_cols=361 Identities=15% Similarity=0.116 Sum_probs=230.1
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHH
Q 009799 38 LYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (525)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (525)
.++.--..+...|+|++|++...+.+...|++..++...-.++.+.++|++|+...+.-......+. ..+.-+.|..+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHc
Confidence 4444445667889999999999999999999999999999999999999999955544332221111 113344444443
Q ss_pred hhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccC
Q 009799 118 SASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKG 197 (525)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (525)
+.. +.++..+.
T Consensus 93 nk~----------------------------------------Dealk~~~----------------------------- 103 (652)
T KOG2376|consen 93 NKL----------------------------------------DEALKTLK----------------------------- 103 (652)
T ss_pred ccH----------------------------------------HHHHHHHh-----------------------------
Confidence 222 11111111
Q ss_pred CCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 009799 198 PTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSAL 277 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 277 (525)
..++.........|.++++.|+|++|+.+|+.++
T Consensus 104 ----------------------------------------------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 104 ----------------------------------------------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred ----------------------------------------------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0111223356667899999999999999999986
Q ss_pred hcC------------------------------CC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcc--------ccCh
Q 009799 278 ELD------------------------------DE-DISYLTNRAAVYLEMGKYEECIKDCDKAVERG--------RELR 318 (525)
Q Consensus 278 ~~~------------------------------p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------~~~~ 318 (525)
+.+ |. +.+.+++.|.++...|+|.+|++.+++++.+. .+..
T Consensus 138 kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 138 KNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEE 217 (652)
T ss_pred hcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 432 22 35678999999999999999999999995432 2223
Q ss_pred hhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhH-----------------------HH---------
Q 009799 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT-----------------------LK--------- 366 (525)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------------~~--------- 366 (525)
+....+..+...++.++..+|+ .++|...|...+...+.... +.
T Consensus 218 eie~el~~IrvQlayVlQ~~Gq----t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQ----TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 4445567788888999999999 99999999999987654220 00
Q ss_pred -------------------------HhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC
Q 009799 367 -------------------------KLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421 (525)
Q Consensus 367 -------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 421 (525)
..+....+.+.........|..............+...+.+|++.+....+.+|.
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~ 373 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE 373 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc
Confidence 0011111122222222223333222333333444444788999999999998998
Q ss_pred C-HHHHHHHHHHHHHcCCchHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhcCHH-------HHHHHHHHHhc
Q 009799 422 D-PRTYSNRAACYTKLGAMPEGLKDADKCI--------ELDPTFSKGYTRKGAIQFFLKEYD-------KALETYQEGLK 485 (525)
Q Consensus 422 ~-~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~-------~A~~~~~~a~~ 485 (525)
+ ..+.+.++.+.+.+|+++.|++.+...+ +.. ..|.+-..+-..+...++.. +|+.+|.....
T Consensus 374 ~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 374 KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 7 6788899999999999999999998333 221 22333333444555555544 44555554444
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 486 HDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 486 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
-.+.....+...+....+-|+..++...+++..+
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 4444444555555555566666666665555554
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=4.5e-13 Score=110.77 Aligned_cols=355 Identities=15% Similarity=0.170 Sum_probs=238.6
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHH
Q 009799 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (525)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 90 (525)
.+++..+|.+||+++..-.+.+|.+...+..+|.||+...+|..|-.+|++.-.+.|......+..+..+.+.+.+..|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34788899999999999999999888999999999999999999999999999999998888888999999999999998
Q ss_pred HHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhC
Q 009799 91 NSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRN 170 (525)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (525)
......... +........+.. +|...
T Consensus 99 rV~~~~~D~----~~L~~~~lqLqa--------------------------------------------------AIkYs 124 (459)
T KOG4340|consen 99 RVAFLLLDN----PALHSRVLQLQA--------------------------------------------------AIKYS 124 (459)
T ss_pred HHHHHhcCC----HHHHHHHHHHHH--------------------------------------------------HHhcc
Confidence 887665432 222211111111 11111
Q ss_pred CCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhH--H
Q 009799 171 PNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERK--E 248 (525)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 248 (525)
.+ ++......+...| .
T Consensus 125 e~--------------------------------------------------------------Dl~g~rsLveQlp~en 142 (459)
T KOG4340|consen 125 EG--------------------------------------------------------------DLPGSRSLVEQLPSEN 142 (459)
T ss_pred cc--------------------------------------------------------------cCcchHHHHHhccCCC
Confidence 00 0111111122222 4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc----cccCh------
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER----GRELR------ 318 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~------ 318 (525)
.+....+.|.+.++.|+++.|++-|+.+++...-++.+-++++.++++.|++..|+++...+++. .|+..
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 56777888999999999999999999999999999999999999999999999999998888764 33211
Q ss_pred ------------hhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh------H------HHHhchHHHH
Q 009799 319 ------------SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD------T------LKKLNEAEKA 374 (525)
Q Consensus 319 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~------~~~~~~~~~a 374 (525)
-....+..++...+-+++..++ ++.|.+.+.. ..|..+ . ....+++...
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n----~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n~~~~p~~g 295 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRN----YEAAQEALTD---MPPRAEEELDPVTLHNQALMNMDARPTEG 295 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhccc----HHHHHHHhhc---CCCcccccCCchhhhHHHHhcccCCcccc
Confidence 0112335666667777777777 8877665532 333321 1 1223557777
Q ss_pred HHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHH------------------HHhcCCCCHHH-HHHHH-----
Q 009799 375 KKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTE------------------SLRRNPKDPRT-YSNRA----- 430 (525)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------------------al~~~~~~~~~-~~~la----- 430 (525)
..-+.-.+..+|--++.+-++-.+|.+..-|+-|...+-+ ++-..|.+++. .-.++
T Consensus 296 ~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~ 375 (459)
T KOG4340|consen 296 FEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM 375 (459)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7778888888998888888888888888777777665432 11112222211 00000
Q ss_pred ----------HHHHHc-CC----chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH
Q 009799 431 ----------ACYTKL-GA----MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 431 ----------~~~~~~-~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 491 (525)
.+.... .+ ...|++.|+.++++ ...+....+++|+...+|..+.+.|....+...++.
T Consensus 376 l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 376 LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence 010000 00 12334444444443 234567778888888889888888888887766553
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=5e-13 Score=108.00 Aligned_cols=187 Identities=16% Similarity=0.056 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHH
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 326 (525)
++....+-....+....|+.+.|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K---- 124 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK---- 124 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH----
Confidence 4556666677788889999999999999999999999999999999999999999999999999999998854433
Q ss_pred HHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChh
Q 009799 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (525)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (525)
+.--+...+|+ .-+|++.+...++ ..+.+.++|..++.+|...|+|+
T Consensus 125 ---RKlAilka~GK----~l~aIk~ln~YL~--------------------------~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 125 ---RKLAILKAQGK----NLEAIKELNEYLD--------------------------KFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred ---HHHHHHHHcCC----cHHHHHHHHHHHH--------------------------HhcCcHHHHHHHHHHHHhHhHHH
Confidence 33333333444 6677777777776 88999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 009799 407 EAIQHYTESLRRNPKDPRTYSNRAACYTKLG---AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFL 470 (525)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 470 (525)
+|.-++++.+-+.|.++..+..+|.+++-+| ++.-|.++|.++++++|.+..+++.+-.+....
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988776 467899999999999998888887766554443
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.59 E-value=1.8e-13 Score=111.75 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=142.9
Q ss_pred ccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhccc
Q 009799 264 KEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK 343 (525)
Q Consensus 264 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
.+...+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+. ..+...|......|+
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~-------~ll~~~gk~~~~~g~--- 115 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR-------ELLAAQGKNQIRNGN--- 115 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH-------HHHHHHHHHHHHhcc---
Confidence 34444666677777788888888 8888888888888888888888877777763 334345555555555
Q ss_pred chHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCH
Q 009799 344 DYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP 423 (525)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 423 (525)
+..|+..++++.. ..|.+.++|..+|.+|.+.|+++.|...|.+++++.|.++
T Consensus 116 -~~~A~~~~rkA~~--------------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 116 -FGEAVSVLRKAAR--------------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred -hHHHHHHHHHHhc--------------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence 8888888888877 7888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 009799 424 RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQE 482 (525)
Q Consensus 424 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (525)
.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+....|++.+|...-.+
T Consensus 169 ~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 169 SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 88888888888888888888888888887777888888888888888888888766544
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.59 E-value=2.1e-13 Score=119.53 Aligned_cols=166 Identities=16% Similarity=0.224 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhh
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKG 332 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 332 (525)
....|.++...|++++|+..+.+. .+.+.......+++.+++++.|.+.++.+-+.+.+. ....++.+|..+.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~--~l~qLa~awv~l~ 177 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS--ILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHH
Confidence 344577788889999999887753 567888888899999999999999998887766543 2223344443322
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHH
Q 009799 333 TALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHY 412 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 412 (525)
. | ...+.+|...|++... ..+.++..++.++.+++.+|+|++|.+.+
T Consensus 178 ~-----g--~e~~~~A~y~f~El~~--------------------------~~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 178 T-----G--GEKYQDAFYIFEELSD--------------------------KFGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp H-----T--TTCCCHHHHHHHHHHC--------------------------CS--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred h-----C--chhHHHHHHHHHHHHh--------------------------ccCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1 1 1225666666666544 34445556666666666666666666666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCc-hHHHHHHHHHHhcCCCCHH
Q 009799 413 TESLRRNPKDPRTYSNRAACYTKLGAM-PEGLKDADKCIELDPTFSK 458 (525)
Q Consensus 413 ~~al~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~ 458 (525)
.+++..+|+++.++.+++.+...+|+. +.+.+++.+....+|+++.
T Consensus 225 ~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 225 EEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 666666666666666666666666665 3444555555555666554
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=127.90 Aligned_cols=233 Identities=13% Similarity=0.152 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
.....-..++..+...|-...|+..|++ +..|-....||...|+..+|..+..+-++..|+ +..
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d--------~~l 459 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD--------PRL 459 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc--------chh
Confidence 3455566789999999999999999998 467888899999999999999999999994444 678
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCC--ChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHR--NPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
|..+|++.....- |++|.++.+....... -+......++++++.+.++..++++|-....|+.+|.+..+.+++
T Consensus 460 yc~LGDv~~d~s~----yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 460 YCLLGDVLHDPSL----YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred HHHhhhhccChHH----HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 8888887777777 8999888877655411 122234468999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
+.|.++|.+++...|++..+|++++..|.+.++-.+|...+.++++.+-++...|.+.-.+....|.+++|++.|.+.+.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC--CCHHHHHHHHHH
Q 009799 486 HDP--QNQELLDGVRRC 500 (525)
Q Consensus 486 ~~p--~~~~~~~~l~~~ 500 (525)
+.- .++++...+...
T Consensus 616 ~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRT 632 (777)
T ss_pred hhhhcccchhhHHHHHH
Confidence 632 244444444443
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.58 E-value=3.2e-13 Score=132.57 Aligned_cols=225 Identities=12% Similarity=0.055 Sum_probs=170.7
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHH
Q 009799 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
...|....++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++... .++...+..... ..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-AI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-hH
Confidence 345788999999999999999999999999999999999999999999999999999988877 777766554311 11
Q ss_pred H-------------HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHH
Q 009799 324 I-------------ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIAD 390 (525)
Q Consensus 324 ~-------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 390 (525)
. -.+++.+|.||.++|+ .++|...|++++. .+|+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~----~~ka~~~yer~L~--------------------------~D~~n~~ 151 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNE----NKKLKGVWERLVK--------------------------ADRDNPE 151 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCC----hHHHHHHHHHHHh--------------------------cCcccHH
Confidence 1 1344444555555554 5555555555554 7888888
Q ss_pred HHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHH----------
Q 009799 391 EEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGY---------- 460 (525)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---------- 460 (525)
+.+++|..|... +.++|+.++.+++.. +...++|..+.+++.+.+..+|++.+.+
T Consensus 152 aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~ 216 (906)
T PRK14720 152 IVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGH 216 (906)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhh
Confidence 888888888888 888888888888765 5556677888888888888888765542
Q ss_pred ----------HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 461 ----------TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 461 ----------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
.-+-.+|...++|++++..++.+++.+|+|..+...++.|+. +++.. ...++++++
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 223377888899999999999999999999999999999998 44433 333444443
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.58 E-value=5.4e-14 Score=107.18 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+.++..|..++..|++++|...|+-+...+|.++..|++||.|+..+|++.+|+..|.+++.++|+++.+++..|.|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEA 105 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~ 105 (525)
.|+.+.|...|+.++.....++.
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999988744433
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.58 E-value=4.6e-13 Score=109.42 Aligned_cols=176 Identities=16% Similarity=0.144 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHH
Q 009799 302 ECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQ 381 (525)
Q Consensus 302 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 381 (525)
.+...+-.....+|++... ......+...|+ -+.+..+..++..
T Consensus 51 ~a~~al~~~~~~~p~d~~i--------~~~a~a~~~~G~----a~~~l~~~~~~~~------------------------ 94 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI--------AKLATALYLRGD----ADSSLAVLQKSAI------------------------ 94 (257)
T ss_pred HHHHHHHHHHhcCcchHHH--------HHHHHHHHhccc----ccchHHHHhhhhc------------------------
Confidence 3566666666778877443 334444444444 7777777777666
Q ss_pred hhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHH
Q 009799 382 EIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (525)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (525)
.+|.+......+|...+..|++..|+..++++....|++..+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..
T Consensus 95 --~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n 172 (257)
T COG5010 95 --AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172 (257)
T ss_pred --cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence 678888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChH
Q 009799 462 RKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPE 515 (525)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 515 (525)
++|..+...|+++.|..++..+...-+.+..+..+++.+....|+...|+....
T Consensus 173 Nlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999999999999999999999999999999999999999999888775543
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.58 E-value=6.2e-13 Score=110.18 Aligned_cols=156 Identities=9% Similarity=0.100 Sum_probs=130.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhh
Q 009799 255 EAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTA 334 (525)
Q Consensus 255 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (525)
.-+..|+..|++.......++.. +|.. -+...++.++++..+++++..+|++ +..|..+|.+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~-------~~~w~~Lg~~ 82 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQN-------SEQWALLGEY 82 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCC-------HHHHHHHHHH
Confidence 34567888999888655543322 2221 1112677899999999999999999 6777788888
Q ss_pred HHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHH-HhcCC--hhHHHHH
Q 009799 335 LVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF-FKQQK--YPEAIQH 411 (525)
Q Consensus 335 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~ 411 (525)
+...++ +++|+..|++++. ..|+++.++..+|.++ ...|+ +++|...
T Consensus 83 ~~~~g~----~~~A~~a~~~Al~--------------------------l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 83 YLWRND----YDNALLAYRQALQ--------------------------LRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHCCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 888888 9999999999999 8999999999999975 67777 5999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHH
Q 009799 412 YTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK 458 (525)
Q Consensus 412 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (525)
++++++.+|+++.+++.+|.++...|++++|+.+|+++++..|.+..
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999999999999877544
No 113
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.58 E-value=3.8e-14 Score=129.18 Aligned_cols=119 Identities=33% Similarity=0.582 Sum_probs=114.5
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009799 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (525)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (525)
|+..+...|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.++
T Consensus 1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhh
Q 009799 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (525)
..+|++++|+..|+++++++|++..+...+..+......
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888777744
No 114
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.56 E-value=2.3e-10 Score=104.87 Aligned_cols=393 Identities=12% Similarity=0.079 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCC--CHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009799 18 YEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD--WSKGYSRLGAAHLGLQDYIEAVNSYKK 95 (525)
Q Consensus 18 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 95 (525)
|..--.+|++++..--+-+..|......++.+|+...-...|.+++..-|- +..+|-..-......|-.+-++..|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 444455666666655556677777777777777777777777777766653 344555555556666666777777777
Q ss_pred hhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchh
Q 009799 96 GLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLN 175 (525)
Q Consensus 96 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (525)
-++.+|...+-+... +...++..++. ..+..+++.+.+..+-.. -...-+..+...+..+|+...
T Consensus 164 YLk~~P~~~eeyie~---L~~~d~~~eaa-----~~la~vln~d~f~sk~gk-------Sn~qlw~elcdlis~~p~~~~ 228 (835)
T KOG2047|consen 164 YLKVAPEAREEYIEY---LAKSDRLDEAA-----QRLATVLNQDEFVSKKGK-------SNHQLWLELCDLISQNPDKVQ 228 (835)
T ss_pred HHhcCHHHHHHHHHH---HHhccchHHHH-----HHHHHhcCchhhhhhccc-------chhhHHHHHHHHHHhCcchhc
Confidence 777777664432221 11111110000 011111111111111000 001223333444444444332
Q ss_pred HHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHH
Q 009799 176 LYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKE 255 (525)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (525)
...-..-+...+..+ ...-...|..
T Consensus 229 slnvdaiiR~gi~rf-------------------------------------------------------tDq~g~Lw~S 253 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRRF-------------------------------------------------------TDQLGFLWCS 253 (835)
T ss_pred ccCHHHHHHhhcccC-------------------------------------------------------cHHHHHHHHH
Confidence 221111111111100 1133455677
Q ss_pred HHHHHHhcccHHHHHHHHHHHhhc--------------------------------------------------------
Q 009799 256 AGNAAYKKKEFEKAIEHYSSALEL-------------------------------------------------------- 279 (525)
Q Consensus 256 ~~~~~~~~~~~~~A~~~~~~~l~~-------------------------------------------------------- 279 (525)
+|..|.+.|.+++|...|++++..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 777777777777777777777622
Q ss_pred -----------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-ccccChhhHHHHHHHHHHhhhhHHHhhhcccchHH
Q 009799 280 -----------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE-RGRELRSDFKMIARALTRKGTALVKMAKCSKDYEP 347 (525)
Q Consensus 280 -----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (525)
+|++..-|..... +..|+..+-+..|..++. .+|..... .....|...|..|...++ .+.
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~G--s~~~Lw~~faklYe~~~~----l~~ 405 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVG--SPGTLWVEFAKLYENNGD----LDD 405 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCC--ChhhHHHHHHHHHHhcCc----HHH
Confidence 2333333332222 234556666666666654 34433221 125666677777777776 777
Q ss_pred HHHHHHHHHhcCCCh------------hHHHHhchHHHHHHHHHHHhhcCC------------------CcHHHHHHhhh
Q 009799 348 AIETFQKALTEHRNP------------DTLKKLNEAEKAKKELEQQEIFDP------------------KIADEEREKGN 397 (525)
Q Consensus 348 A~~~~~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~l~~ 397 (525)
|...|+++....-.. +.-....+++.|+++++.+..... .+..+|..++.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 777777777654321 112334566666666666554321 12345556666
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC--CCCHHHHHHHHH---HHHHhcC
Q 009799 398 EFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD--PTFSKGYTRKGA---IQFFLKE 472 (525)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~---~~~~~g~ 472 (525)
.....|-++.....|++.+.+.--.|..-.+.|..+....-++++.+.|++.+.+. |...+.|...-. .-+.--.
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 66667777777777777777766677777777777777777777777777777764 333344332222 2222235
Q ss_pred HHHHHHHHHHHhccCC
Q 009799 473 YDKALETYQEGLKHDP 488 (525)
Q Consensus 473 ~~~A~~~~~~a~~~~p 488 (525)
.+.|...|++|++..|
T Consensus 566 lEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 566 LERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6777777777777766
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.53 E-value=3.1e-11 Score=126.94 Aligned_cols=353 Identities=13% Similarity=0.064 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHH----hccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCC---------C
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEA----ISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD---------W 69 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~ 69 (525)
+.+...|..+...|++..+..++..+ ...+|. ....++.++...|++++|...+..+....+. .
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~ 451 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQ 451 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHH
Confidence 34556677778888888877776654 223454 2355677778888888888888877654221 1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHH-----HHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhh
Q 009799 70 SKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEA-----LKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAK 144 (525)
Q Consensus 70 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (525)
......+|.++...|++++|...+++++...|.... +...++.++...|+.
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~------------------------ 507 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL------------------------ 507 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH------------------------
Confidence 234456778888888999999888888875444322 222333333333332
Q ss_pred cccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccC
Q 009799 145 LTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRK 224 (525)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (525)
+.+...+.+.+.....
T Consensus 508 ------------~~A~~~~~~al~~~~~---------------------------------------------------- 523 (903)
T PRK04841 508 ------------ARALAMMQQTEQMARQ---------------------------------------------------- 523 (903)
T ss_pred ------------HHHHHHHHHHHHHHhh----------------------------------------------------
Confidence 1111111111110000
Q ss_pred CCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC--------CHHHHHHHHHHHHH
Q 009799 225 PESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE--------DISYLTNRAAVYLE 296 (525)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~ 296 (525)
..........+..+|.++...|+++.|...+.+++..... ....+..+|.++..
T Consensus 524 ------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 524 ------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred ------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 0001123456678899999999999999999998875221 23345678899999
Q ss_pred hcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHH
Q 009799 297 MGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKK 376 (525)
Q Consensus 297 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 376 (525)
.|++++|...+.+++......... .....+..++.++...|+ ++.|...+.++........
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~la~~~~~~G~----~~~A~~~l~~a~~~~~~~~------------- 646 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQ--QQLQCLAMLAKISLARGD----LDNARRYLNRLENLLGNGR------------- 646 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCch--HHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHhccc-------------
Confidence 999999999999998865433211 124566678888888888 9999999988876322110
Q ss_pred HHHHHhhcCCC-cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHHh
Q 009799 377 ELEQQEIFDPK-IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP----RTYSNRAACYTKLGAMPEGLKDADKCIE 451 (525)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (525)
.... ...........+...|+.+.|...+.......+... ..+..+|.++...|++++|...+++++.
T Consensus 647 -------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 647 -------YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred -------ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000 000001112333446777777777666544222221 1245677777777777777777777776
Q ss_pred cC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 452 LD------PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 452 ~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
.. +....++..+|.++...|+.++|...+.+++++....
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 42 1223466677777777788888888887777765443
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.52 E-value=1.4e-12 Score=127.35 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=128.0
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (525)
+.++..+|.+....|. +++|...++.+++ ..|++..+...++.++.+.++
T Consensus 86 ~~~~~~La~i~~~~g~----~~ea~~~l~~~~~--------------------------~~Pd~~~a~~~~a~~L~~~~~ 135 (694)
T PRK15179 86 ELFQVLVARALEAAHR----SDEGLAVWRGIHQ--------------------------RFPDSSEAFILMLRGVKRQQG 135 (694)
T ss_pred HHHHHHHHHHHHHcCC----cHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHhcc
Confidence 5677777777777777 9999999999999 899999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (525)
+++|+..+++++..+|+++..++.+|.++..+|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|++++
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHH
Q 009799 485 KHDPQNQE 492 (525)
Q Consensus 485 ~~~p~~~~ 492 (525)
+...+-..
T Consensus 216 ~~~~~~~~ 223 (694)
T PRK15179 216 DAIGDGAR 223 (694)
T ss_pred HhhCcchH
Confidence 98765543
No 117
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.52 E-value=1.2e-12 Score=114.78 Aligned_cols=189 Identities=18% Similarity=0.175 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhccc
Q 009799 266 FEKAIEHYSSALELD--DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK 343 (525)
Q Consensus 266 ~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
-+.++..++..+... +.++.+....|.++...|++++|++.+.+. ++ .+.....-.++..+++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~-------lE~~al~Vqi~L~~~R--- 146 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GS-------LELLALAVQILLKMNR--- 146 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TC-------HHHHHHHHHHHHHTT----
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Cc-------ccHHHHHHHHHHHcCC---
Confidence 344444444433322 234556677788888899999999988764 22 2333344455666666
Q ss_pred chHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC--ChhHHHHHHHHHHhcCCC
Q 009799 344 DYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ--KYPEAIQHYTESLRRNPK 421 (525)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~ 421 (525)
++.|.+.++.+.+ .+.+..-+....+++.+..| ++.+|.-.|++.....+.
T Consensus 147 -~dlA~k~l~~~~~--------------------------~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~ 199 (290)
T PF04733_consen 147 -PDLAEKELKNMQQ--------------------------IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS 199 (290)
T ss_dssp -HHHHHHHHHHHHC--------------------------CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred -HHHHHHHHHHHHh--------------------------cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence 8989888888776 56666666666677776666 599999999998888888
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHHhccCCCCHHHHHH
Q 009799 422 DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY-DKALETYQEGLKHDPQNQELLDG 496 (525)
Q Consensus 422 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~ 496 (525)
++.+++.+|.+++.+|+|++|...+++++..+|++++++.+++.+...+|+. +.+.+++.+....+|+++.+...
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 66778999999999999866543
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.51 E-value=7.2e-12 Score=122.44 Aligned_cols=157 Identities=10% Similarity=0.000 Sum_probs=139.1
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchH
Q 009799 267 EKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (525)
Q Consensus 267 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
.+++.-........|.++.++..+|.+....|.+++|...++.+++..|++ ..+...++.++.+.++ ++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a~~L~~~~~----~e 137 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILMLRGVKRQQG----IE 137 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHhcc----HH
Confidence 334444444455689999999999999999999999999999999999999 6667777777777777 99
Q ss_pred HHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHH
Q 009799 347 PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTY 426 (525)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 426 (525)
+|+..+++++. ..|+++..++.+|.++...|++++|+.+|++++..+|+++.++
T Consensus 138 eA~~~~~~~l~--------------------------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~ 191 (694)
T PRK15179 138 AGRAEIELYFS--------------------------GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGY 191 (694)
T ss_pred HHHHHHHHHhh--------------------------cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHH
Q 009799 427 SNRAACYTKLGAMPEGLKDADKCIELDPTFSKGY 460 (525)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 460 (525)
..+|.++...|+.++|...|+++++....-...+
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 9999999999999999999999999865544443
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.50 E-value=4.8e-13 Score=105.13 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
...+..|..++..|++++|+..|++++..+|.++.++..+|.++..+|++++|+..+++++..+|+++..++.+|.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLA 111 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 111 (525)
.|++++|+..|+++++.+|++........
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 126 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYSELKE 126 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 99999999999999999999987554443
No 120
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.50 E-value=6.8e-13 Score=121.02 Aligned_cols=116 Identities=30% Similarity=0.573 Sum_probs=110.6
Q ss_pred HHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 009799 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK 471 (525)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 471 (525)
+...|..++..|+|++|+..|+++++.+|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009799 472 EYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (525)
Q Consensus 472 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 507 (525)
++++|+..|+++++++|+++.+...++.|...+...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888653
No 121
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.49 E-value=1.5e-11 Score=105.32 Aligned_cols=179 Identities=13% Similarity=0.066 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHH---HHHHHHHHhhcccHHHHHHHHHHhhccCCCC---HHHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVL---YSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYSRL 76 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 76 (525)
+.++..|..++..|+|++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|++ +.+++.+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 567788888999999999999999999988887644 4888999999999999999999999888876 4567888
Q ss_pred HHHHhhhh------------------hHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccC
Q 009799 77 GAAHLGLQ------------------DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAG 138 (525)
Q Consensus 77 a~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (525)
|.++...+ ...+|+..|++.++..|+..-+......+
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl------------------------- 167 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL------------------------- 167 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH-------------------------
Confidence 87764443 13466677777777777664321111100
Q ss_pred chhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCc
Q 009799 139 PEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETS 218 (525)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (525)
.
T Consensus 168 ---------------------------------------------~---------------------------------- 168 (243)
T PRK10866 168 ---------------------------------------------V---------------------------------- 168 (243)
T ss_pred ---------------------------------------------H----------------------------------
Confidence 0
Q ss_pred hhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHH
Q 009799 219 KEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYL 295 (525)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~ 295 (525)
.....-+.--+..|..|++.|.|..|+.-++.+++..|+. .+++..++..|.
T Consensus 169 -------------------------~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~ 223 (243)
T PRK10866 169 -------------------------FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYR 223 (243)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 0001223334577999999999999999999999998875 578899999999
Q ss_pred HhcCHHHHHHHHHHH
Q 009799 296 EMGKYEECIKDCDKA 310 (525)
Q Consensus 296 ~~~~~~~A~~~~~~~ 310 (525)
.+|..++|.......
T Consensus 224 ~lg~~~~a~~~~~~l 238 (243)
T PRK10866 224 QLQLNAQADKVAKII 238 (243)
T ss_pred HcCChHHHHHHHHHH
Confidence 999999998876554
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.49 E-value=9.9e-12 Score=104.07 Aligned_cols=174 Identities=20% Similarity=0.236 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCH---HHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDWS---KGYSR 75 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 75 (525)
++.++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++.+|+..+++.++..|+++ .+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4689999999999999999999999999998874 48899999999999999999999999999999864 58889
Q ss_pred HHHHHhhhh-----------hHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhh
Q 009799 76 LGAAHLGLQ-----------DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAK 144 (525)
Q Consensus 76 la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (525)
+|.++..+. ...+|+..|+..+...|++..+......+.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~------------------------------ 134 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLA------------------------------ 134 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHH------------------------------
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHH------------------------------
Confidence 999876654 345788888888888887654321111110
Q ss_pred cccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccC
Q 009799 145 LTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRK 224 (525)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (525)
T Consensus 135 -------------------------------------------------------------------------------- 134 (203)
T PF13525_consen 135 -------------------------------------------------------------------------------- 134 (203)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhcCHH
Q 009799 225 PESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVYLEMGKYE 301 (525)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~ 301 (525)
.....-+.--+.+|..|++.|.|..|+..++.+++..|+.. .++..++.+|..+|..+
T Consensus 135 -------------------~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 135 -------------------ELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 00112334456679999999999999999999999999975 67888999999999988
Q ss_pred HHH
Q 009799 302 ECI 304 (525)
Q Consensus 302 ~A~ 304 (525)
.|.
T Consensus 196 ~a~ 198 (203)
T PF13525_consen 196 AAD 198 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 123
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.48 E-value=8.1e-11 Score=123.78 Aligned_cols=382 Identities=10% Similarity=-0.013 Sum_probs=250.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhhh
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVE-LKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 83 (525)
+...|..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+-. ....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 455677788899999999877665322 22235566678888889998887777765411 1123455667788888999
Q ss_pred hhHHHHHHHHHHhhccCCC-----cHH----HHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccc
Q 009799 84 QDYIEAVNSYKKGLDIDPN-----NEA----LKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSY 154 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~-----~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
|++++|...+..+....+. .+. ....++.++...|+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~---------------------------------- 468 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDP---------------------------------- 468 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCH----------------------------------
Confidence 9999999999988764322 111 111122222222221
Q ss_pred cchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCCh
Q 009799 155 LDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPM 234 (525)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (525)
..+...+...+...+..
T Consensus 469 --~~A~~~~~~al~~~~~~------------------------------------------------------------- 485 (903)
T PRK04841 469 --EEAERLAELALAELPLT------------------------------------------------------------- 485 (903)
T ss_pred --HHHHHHHHHHHhcCCCc-------------------------------------------------------------
Confidence 11112222222111110
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHH
Q 009799 235 ELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED------ISYLTNRAAVYLEMGKYEECIKDCD 308 (525)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~ 308 (525)
.......+...+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...+.
T Consensus 486 ----------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 555 (903)
T PRK04841 486 ----------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQE 555 (903)
T ss_pred ----------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 001133455678999999999999999999998753321 2456788999999999999999999
Q ss_pred HHHHccccChh-hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCC
Q 009799 309 KAVERGRELRS-DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK 387 (525)
Q Consensus 309 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 387 (525)
+++........ .......++..+|.++...|+ +++|...+.+++...... ..+.
T Consensus 556 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~----~~~A~~~~~~al~~~~~~---------------------~~~~ 610 (903)
T PRK04841 556 KAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR----LDEAEQCARKGLEVLSNY---------------------QPQQ 610 (903)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHhcC----HHHHHHHHHHhHHhhhcc---------------------CchH
Confidence 99886433211 001113345567788888888 999999999988742210 0112
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---HHHHH----HHHHHHHHcCCchHHHHHHHHHHhcCCCCHH--
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYS----NRAACYTKLGAMPEGLKDADKCIELDPTFSK-- 458 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~----~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 458 (525)
....+..+|.++...|++++|...+.++..+.+.. ..... .....+...|+.+.|..++.......+....
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 34566678999999999999999999997653321 11111 1224455688999999998776653322222
Q ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 459 --GYTRKGAIQFFLKEYDKALETYQEGLKHDP------QNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 459 --~~~~la~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
.+..+|.++...|++++|...+++++.... ....++..++.++...|+..+|...+.++.+
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 256789999999999999999999988632 2245777889999999998888766666554
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.48 E-value=1.2e-12 Score=121.31 Aligned_cols=218 Identities=15% Similarity=0.145 Sum_probs=189.7
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCC
Q 009799 281 DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (525)
Q Consensus 281 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (525)
|........++.++...|-...|+.+|++.-.. .....+|...|+ ..+|.....+-++..|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw---------------~~vi~CY~~lg~----~~kaeei~~q~lek~~ 455 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMW---------------DPVILCYLLLGQ----HGKAEEINRQELEKDP 455 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHH---------------HHHHHHHHHhcc----cchHHHHHHHHhcCCC
Confidence 334456778999999999999999999986443 333444555555 9999999999999888
Q ss_pred ChhHHHHhchHHHHHHHHHHHhhcCC-CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Q 009799 361 NPDTLKKLNEAEKAKKELEQQEIFDP-KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAM 439 (525)
Q Consensus 361 ~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 439 (525)
.+..+..+|++-.--.+|+++.+... .+..+...+|......++|+++.+.++..++++|-....|+.+|.+..+.+++
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 99999999998888888888877543 35567788888888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHH
Q 009799 440 PEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEEL 517 (525)
Q Consensus 440 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 517 (525)
..|.++|..++.++|++..+|.+++..|...|+..+|...++++++.+-++..+|.+...+...+|..+++...+...
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988876554443
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.43 E-value=2.4e-11 Score=108.16 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
.+.+..+..++..|++++|...++..+...|+|+..+...+.+++..|+.++|++.+++++.++|+.+..++.+|..+++
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhh
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (525)
.|++.+|+..++..+..+|+++..|..|+..+...|+
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999888865
No 126
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=3.8e-08 Score=90.79 Aligned_cols=236 Identities=10% Similarity=0.071 Sum_probs=179.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc-CCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccc
Q 009799 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL-DDED-----ISYLTNRAAVYLEMGKYEECIKDCDKAVERGR 315 (525)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 315 (525)
.+.++|.+...|..... +..|+..+-+..|.+++.. +|.- ...|..+|..|...|+.+.|..+|+++.+..-
T Consensus 341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 45566666666665544 4468888999999888764 5543 46899999999999999999999999998654
Q ss_pred cChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh--------------------------HHHHhc
Q 009799 316 ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD--------------------------TLKKLN 369 (525)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------------~~~~~~ 369 (525)
... ..++.+|..-|..-....+ ++.|+.+.+.+......+. .....|
T Consensus 419 ~~v---~dLa~vw~~waemElrh~~----~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 419 KTV---EDLAEVWCAWAEMELRHEN----FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred cch---HHHHHHHHHHHHHHHhhhh----HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 433 3348888888888888888 9999999999887654421 234567
Q ss_pred hHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCC--CCHHHHHHHHHHH---HHcCCchHHHH
Q 009799 370 EAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP--KDPRTYSNRAACY---TKLGAMPEGLK 444 (525)
Q Consensus 370 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~---~~~~~~~~A~~ 444 (525)
-++.....|++.+.+.--.|....+.|..+....-+++|.+.|++.+.+.+ .-.++|...-..+ ..-...+.|..
T Consensus 492 tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 888888899999999888999999999999999999999999999998864 4445665433333 33346899999
Q ss_pred HHHHHHhcCCCC-H-HHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 445 DADKCIELDPTF-S-KGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 445 ~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
.|++|++..|.. . ..+...+..-..-|--..|+..|++|-.-
T Consensus 572 LFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 572 LFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 999999988732 2 24555566666678888888888887554
No 127
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.42 E-value=1.4e-13 Score=115.96 Aligned_cols=235 Identities=22% Similarity=0.181 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
.+.++|+.||.+|+|++||.+|.+++..+|.++..+.++|.+|++++.|..|...|..++.++..+..+|.++|.+-..+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHH
Q 009799 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (525)
|+..+|.+.++.++++.|++.+....++.+-...... .
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~-----------------------------------------I- 216 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRERK-----------------------------------------I- 216 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhh-----------------------------------------H-
Confidence 9999999999999999999877665554432111000 0
Q ss_pred HHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHH
Q 009799 164 MKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEA 243 (525)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (525)
.....|........
T Consensus 217 --~~KsT~G~~~A~Q~---------------------------------------------------------------- 230 (536)
T KOG4648|consen 217 --ATKSTPGFTPARQG---------------------------------------------------------------- 230 (536)
T ss_pred --HhhcCCCCCccccc----------------------------------------------------------------
Confidence 00000000000000
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHH
Q 009799 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
.......-..|..+...|.++.++.++.+-+..+.++...... +..|...-+++.++....+.+...|......
T Consensus 231 ---~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~-- 304 (536)
T KOG4648|consen 231 ---MIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDT-- 304 (536)
T ss_pred ---hhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCccc--
Confidence 0000011223777888899999999998877776665544444 6777888889999999988888877654332
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (525)
...|.+-.-.+. ..++...++.++...|.
T Consensus 305 -----s~~~~A~T~~~~----~~E~K~~~~T~~~~~P~ 333 (536)
T KOG4648|consen 305 -----SGPPKAETIAKT----SKEVKPTKQTAVKVAPA 333 (536)
T ss_pred -----CCCchhHHHHhh----hhhcCcchhheeeeccc
Confidence 233333333333 66677777777766554
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.38 E-value=1.7e-10 Score=102.89 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=133.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCC
Q 009799 281 DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (525)
Q Consensus 281 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (525)
|....+++..+..++..|++++|...+...+...|++ ...+...+.++...++ ..+|.+.+++++.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-------~~~~~~~~~i~~~~nk----~~~A~e~~~kal~--- 368 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-------PYYLELAGDILLEANK----AKEAIERLKKALA--- 368 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCC----hHHHHHHHHHHHh---
Confidence 7778899999999999999999999999999999988 5566666777777777 9999999998888
Q ss_pred ChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch
Q 009799 361 NPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMP 440 (525)
Q Consensus 361 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 440 (525)
.+|..+..+.++|..++..|++.+|+..++..+..+|+++..|..+|..|..+|+..
T Consensus 369 -----------------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 369 -----------------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred -----------------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 788888899999999999999999999999999999999999999999999999765
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 441 EGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 441 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
+|. ...+..|+..|++++|+..+..+.+...-+
T Consensus 426 ~a~-----------------~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 426 EAL-----------------LARAEGYALAGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHhccCC
Confidence 554 456777888899999999999998876333
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.38 E-value=7.3e-12 Score=96.14 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC---HHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYSR 75 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 75 (525)
.+.++..|..++..|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4688999999999999999999999999998876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHh
Q 009799 76 LGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKS 108 (525)
Q Consensus 76 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 108 (525)
+|.++...|++++|+..++++++..|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999876543
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.4e-11 Score=100.84 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---chHHHHHHH
Q 009799 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA---MPEGLKDAD 447 (525)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~ 447 (525)
.+..+.-++..+..+|++++-|..+|.+|+..|++..|...|.+++++.|+++..+..+|.++....+ ..++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34445555666669999999999999999999999999999999999999999999999999876644 578999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009799 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 448 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 504 (525)
+++..+|+++.+.+.+|..++..|+|.+|+..++..+...|.+..-...+.+.....
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888765555555444433
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.36 E-value=2.1e-10 Score=96.04 Aligned_cols=182 Identities=20% Similarity=0.275 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 324 (525)
..+..++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.++...|++++|+..+++.+...|+++..
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~---- 78 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA---- 78 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----
Confidence 356789999999999999999999999999998876 5789999999999999999999999999999998654
Q ss_pred HHHHHHhhhhHHHhhh-------cccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhh
Q 009799 325 ARALTRKGTALVKMAK-------CSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGN 397 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 397 (525)
..+++.+|.++..... ......+|+..|+..+...|++......... +.. +......--+.+|.
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~------l~~---l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR------LAE---LRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH------HHH---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH------HHH---HHHHHHHHHHHHHH
Confidence 5677777777655432 1122557788888888877765432211110 000 11111233345677
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCchHH
Q 009799 398 EFFKQQKYPEAIQHYTESLRRNPKDP---RTYSNRAACYTKLGAMPEG 442 (525)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A 442 (525)
.|.+.|.|..|+..++.+++..|+.+ .++..++.+|..+|..+.|
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777788888888888777777764 4667777777777776643
No 132
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9e-12 Score=108.67 Aligned_cols=119 Identities=29% Similarity=0.443 Sum_probs=107.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCc---------------hhHHHHHHHHHHhhcccHHHHHHHHHHhhccC
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD---------------NHVLYSNRSAAHASLHNYADALADAKKTVELK 66 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 66 (525)
|......|+.+++.|+|..|...|++++..-+. -..++.+++.|+.++++|.+|+..+.++|..+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 455678999999999999999999999875321 13678999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhc
Q 009799 67 PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (525)
Q Consensus 67 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (525)
|+|..++++.|.++..+|+|+.|+..|+++++++|+|..+...+..+.....+.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887777554
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.36 E-value=1.9e-11 Score=93.79 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=99.2
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC---HHHHHH
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF---SKGYTR 462 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 462 (525)
+..++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+.+|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999999876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHH
Q 009799 463 KGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (525)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 496 (525)
+|.++...|++++|..++++++...|+++.+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999999999999999999999876544
No 134
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.36 E-value=3.4e-10 Score=97.01 Aligned_cols=186 Identities=12% Similarity=0.103 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHH---HHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYL---TNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
.+..++..|..++..|+|++|+..|++++...|..+.+. +.+|.++.+.+++++|+..+++.++.+|+++.. .
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~----~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----D 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----H
Confidence 456688899999999999999999999999999987554 899999999999999999999999999998765 5
Q ss_pred HHHHHhhhhHHHhhh-----------c---ccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHH
Q 009799 326 RALTRKGTALVKMAK-----------C---SKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADE 391 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~-----------~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 391 (525)
.+++.+|.++...+. . .....+|+..|++.+...|++........ .+. .+......-
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~------rl~---~l~~~la~~ 177 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATK------RLV---FLKDRLAKY 177 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHH------HHH---HHHHHHHHH
Confidence 777777766543331 0 01134566777777776666442211110 000 011111222
Q ss_pred HHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchHHHHHHH
Q 009799 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDAD 447 (525)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~ 447 (525)
-+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|.....
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3345666666666666666666666666654 3556666666666666666655443
No 135
>PRK15331 chaperone protein SicA; Provisional
Probab=99.36 E-value=2.3e-11 Score=93.25 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=114.4
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (525)
+.++..+..+..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..+++++|...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 66677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009799 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (525)
|.|+..+|+.+.|..+|+.++. .|.+..+...-...+..+.+..+
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~~~ 156 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKTAET 156 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999 68888887777777776665443
No 136
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=95.84 Aligned_cols=114 Identities=36% Similarity=0.598 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch-----hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN-----HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRL 76 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 76 (525)
++.+...|+.+|..|+|++|..-|..||..-|.. ..+|.+.|.++++++.++.|+..+.++++++|.+..++.++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4567889999999999999999999999998874 46788999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHH
Q 009799 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (525)
Q Consensus 77 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (525)
|.+|.++..|++|+..|.++++.+|....+.....++--
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 999999999999999999999999999888777665533
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.33 E-value=4e-12 Score=86.15 Aligned_cols=66 Identities=36% Similarity=0.573 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcc-cHHHHHHHHHHhhccCC
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH-NYADALADAKKTVELKP 67 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 67 (525)
|+.|..+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3455555555555555555555555555555555555555555555555 45555555555555554
No 138
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.32 E-value=3.6e-12 Score=107.63 Aligned_cols=240 Identities=19% Similarity=0.196 Sum_probs=187.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhh
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKG 332 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 332 (525)
.-..|.-|+.+|.|++|+.+|.+++..+|.++..+.++|..|++...+..|...++.++.++... ..+|.+.+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-------~KAYSRR~ 172 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-------VKAYSRRM 172 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-------HHHHHHHH
Confidence 66789999999999999999999999999999999999999999999999999999999987655 67888888
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHH---------HHhhhHHHhcC
Q 009799 333 TALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEE---------REKGNEFFKQQ 403 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~ 403 (525)
.+-..+|. ..+|.+.++.++.+.|...-+.+.-.--.....-+-+.+..|....+. -.-|..+...|
T Consensus 173 ~AR~~Lg~----~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~ 248 (536)
T KOG4648|consen 173 QARESLGN----NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKA 248 (536)
T ss_pred HHHHHHhh----HHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhh
Confidence 88888888 999999999999999986544332111111111112222333322221 23466677888
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 404 KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
.++.++.++-+.+....++..+..+ +..+.+.-+++.++...-+++..+|.........|..-.-.|...++...++.+
T Consensus 249 ~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 249 MRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred ccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence 8899998888777666655555444 777888889999999999999988887777777777777788899999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHh
Q 009799 484 LKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 484 ~~~~p~~~~~~~~l~~~~~~~ 504 (525)
+.+.|.+......+.+.-..+
T Consensus 328 ~~~~P~~~~~~~~~sr~~~~i 348 (536)
T KOG4648|consen 328 VKVAPAVETPKETETRKDTKI 348 (536)
T ss_pred eeeccccccchhhhhhhcccc
Confidence 999999988777776665544
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.32 E-value=3.2e-11 Score=88.90 Aligned_cols=99 Identities=40% Similarity=0.632 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
.++.+|..++..|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCC
Q 009799 84 QDYIEAVNSYKKGLDIDPN 102 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~ 102 (525)
|+++.|...+.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988874
No 140
>PRK15331 chaperone protein SicA; Provisional
Probab=99.31 E-value=4.1e-11 Score=91.92 Aligned_cols=111 Identities=13% Similarity=0.024 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+..+..|..++.+|++++|...|+-....+|.+++.|++||.|+..+|+|++|+..|..+..++++++...+..|.|++.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (525)
+|+.+.|+.+|+.++. .|.+......-...+
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L 148 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYL 148 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence 9999999999999998 576655544333333
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.31 E-value=5e-12 Score=89.28 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=74.4
Q ss_pred hcCCHHHHHHHHHHHhccCCc--hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHH
Q 009799 14 SSGDYEAAVRHFTEAISLSPD--NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVN 91 (525)
Q Consensus 14 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 91 (525)
.+|+|+.|+..|++++..+|. +...++.+|.|++++|++++|+..+++ .+.+|.++...+.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 378999999999999999995 567888899999999999999999999 88899899999999999999999999999
Q ss_pred HHHHh
Q 009799 92 SYKKG 96 (525)
Q Consensus 92 ~~~~a 96 (525)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 142
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.2e-11 Score=105.29 Aligned_cols=120 Identities=31% Similarity=0.460 Sum_probs=107.2
Q ss_pred HHHHhhhHHHhcCChhHHHHHHHHHHhcCCC----C-----------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC
Q 009799 391 EEREKGNEFFKQQKYPEAIQHYTESLRRNPK----D-----------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (525)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (525)
.....|+.+++.|+|..|...|++++..-+. + ..++.+++.|+.++++|.+|+..++++|.++|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 3456789999999999999999998865331 1 257899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccc
Q 009799 456 FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRG 510 (525)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a 510 (525)
|..+++..|.++..+|+++.|+..|++++++.|+|..+...|..+..+..+....
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887765443
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.31 E-value=8.4e-12 Score=84.58 Aligned_cols=67 Identities=30% Similarity=0.541 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHhccCC
Q 009799 422 DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK-EYDKALETYQEGLKHDP 488 (525)
Q Consensus 422 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p 488 (525)
++.+|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777777777777777777777777777777777777777777777 57777777777777776
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.2e-08 Score=83.88 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHh
Q 009799 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRK 331 (525)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (525)
....-|.++...|++++|+...... .+.++...-..++.++.+.+-|...++++..++.+. ....++.+|..+
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~l 182 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKL 182 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHH
Confidence 3444577899999999999988763 456677777888999999999999999998877543 333345555554
Q ss_pred hhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHH
Q 009799 332 GTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQH 411 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 411 (525)
+. ..+.+.+|.-+|+..-+ ..|..+......+.+++.+|+|++|...
T Consensus 183 a~-------ggek~qdAfyifeE~s~--------------------------k~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 183 AT-------GGEKIQDAFYIFEELSE--------------------------KTPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred hc-------cchhhhhHHHHHHHHhc--------------------------ccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 43 22236667777776665 5677788888889999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHH-HHHHHHhcCCCCHHH
Q 009799 412 YTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK-DADKCIELDPTFSKG 459 (525)
Q Consensus 412 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~p~~~~~ 459 (525)
++.++..++++++++.++-.+-...|...++.. .+.+....+|+++.+
T Consensus 230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 230 LEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 999999999999999999999888888766654 455666667877654
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.28 E-value=8.7e-11 Score=95.99 Aligned_cols=106 Identities=23% Similarity=0.311 Sum_probs=97.1
Q ss_pred CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHH
Q 009799 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (525)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (525)
.+.....++.+|..+...|++++|+.+|+++++..|+. +.++..+|.++...|++++|+..+++++...|+++..+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 45667789999999999999999999999999887653 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC--------------HHHHHHHHHHHhccCCCC
Q 009799 462 RKGAIQFFLKE--------------YDKALETYQEGLKHDPQN 490 (525)
Q Consensus 462 ~la~~~~~~g~--------------~~~A~~~~~~a~~~~p~~ 490 (525)
.+|.++...|+ +++|.+++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999887 688999999999999998
No 146
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.27 E-value=8.9e-10 Score=87.20 Aligned_cols=104 Identities=20% Similarity=0.167 Sum_probs=95.9
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
|.-++++|..|-..|-+.-|.--|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+--++.++|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEA 105 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~ 105 (525)
--|++.-|.+.+.+-.+.+|++|-
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999998874
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.27 E-value=2.2e-11 Score=81.26 Aligned_cols=64 Identities=30% Similarity=0.445 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCH
Q 009799 7 AKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS 70 (525)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 70 (525)
.+|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777654
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.27 E-value=9.1e-11 Score=86.43 Aligned_cols=99 Identities=37% Similarity=0.640 Sum_probs=94.5
Q ss_pred HHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 009799 391 EEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFL 470 (525)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 470 (525)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhccCCC
Q 009799 471 KEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 471 g~~~~A~~~~~~a~~~~p~ 489 (525)
|++++|..++.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.26 E-value=7.7e-10 Score=98.15 Aligned_cols=202 Identities=17% Similarity=0.220 Sum_probs=141.9
Q ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccc
Q 009799 265 EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKD 344 (525)
Q Consensus 265 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (525)
++++|...|.++ |.+|...|++++|...|.++....... ......+..+...+.++... +
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~-~~~~~Aa~~~~~Aa~~~k~~-~---- 89 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKL-GDKFEAAKAYEEAANCYKKG-D---- 89 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHT-T----
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhh-C----
Confidence 666666666654 667777888888888888887665442 22233367777777776655 6
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhc-CChhHHHHHHHHHHhcCCC--
Q 009799 345 YEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ-QKYPEAIQHYTESLRRNPK-- 421 (525)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~-- 421 (525)
+++|+.+|++++. ++...|++..| ...+..+|.+|... |++++|+++|+++++....
T Consensus 90 ~~~Ai~~~~~A~~------~y~~~G~~~~a--------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 90 PDEAIECYEKAIE------IYREAGRFSQA--------------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp HHHHHHHHHHHHH------HHHHCT-HHHH--------------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH------HHHhcCcHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 8899999998887 44444544443 45667789999998 9999999999999987432
Q ss_pred C----HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 422 D----PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF-------SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 422 ~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
. ..++..+|.++..+|+|++|+..|+++....-++ ...++..+.|++..|+...|...+++....+|..
T Consensus 150 ~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 150 SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2 3577899999999999999999999998753221 1355678889999999999999999999999864
Q ss_pred H--HHHHHHHHHHHHhhh
Q 009799 491 Q--ELLDGVRRCVQQINK 506 (525)
Q Consensus 491 ~--~~~~~l~~~~~~~~~ 506 (525)
. .-...+..++.....
T Consensus 230 ~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 230 ASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TTSHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 3 223345555554444
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.8e-10 Score=95.24 Aligned_cols=127 Identities=22% Similarity=0.253 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCc
Q 009799 52 YADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNP 131 (525)
Q Consensus 52 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 131 (525)
.+.-+.-++.-+..+|++.+.|..+|.+|+.+|++..|...|.+++++.|++++.+..++.++.....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~------------ 205 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG------------ 205 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC------------
Confidence 55667778888899999999999999999999999999999999999999999999888877655422
Q ss_pred ccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccC
Q 009799 132 FGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDA 211 (525)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (525)
T Consensus 206 -------------------------------------------------------------------------------- 205 (287)
T COG4235 206 -------------------------------------------------------------------------------- 205 (287)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 009799 212 PKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRA 291 (525)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la 291 (525)
.....++...+++++..+|.+..+.+.+|
T Consensus 206 ---------------------------------------------------~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 206 ---------------------------------------------------QQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred ---------------------------------------------------CcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 23457889999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 292 AVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 292 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
..++..|+|.+|+..++..++..|.+.+..
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 999999999999999999999998875543
No 151
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=4.4e-09 Score=87.64 Aligned_cols=296 Identities=14% Similarity=0.139 Sum_probs=194.0
Q ss_pred HhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCC
Q 009799 46 HASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRS 125 (525)
Q Consensus 46 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 125 (525)
+.+..+|.+|++++..-.+.+|.+..++..+|.||....+|..|..+|++.-...|.........+..+...+.+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~----- 94 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY----- 94 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc-----
Confidence 367789999999999999999999999999999999999999999999999999999887776666555444332
Q ss_pred CCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccc
Q 009799 126 PPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVE 205 (525)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (525)
...++.+..-.
T Consensus 95 -----------------------------------ADALrV~~~~~---------------------------------- 105 (459)
T KOG4340|consen 95 -----------------------------------ADALRVAFLLL---------------------------------- 105 (459)
T ss_pred -----------------------------------HHHHHHHHHhc----------------------------------
Confidence 01111110000
Q ss_pred cccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHH
Q 009799 206 MQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDIS 285 (525)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 285 (525)
.............+-+.+..+++..+....++.-. .++..
T Consensus 106 --------------------------------------D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad 145 (459)
T KOG4340|consen 106 --------------------------------------DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEAD 145 (459)
T ss_pred --------------------------------------CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccc
Confidence 00112233344456677888888888877665321 25678
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC----CC
Q 009799 286 YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH----RN 361 (525)
Q Consensus 286 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~ 361 (525)
...+.|.+.++.|+++.|++-|+.+++...-.+. .-++++.+++..++ ++.|+++..+.++.. |.
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-------lAYniALaHy~~~q----yasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-------LAYNLALAHYSSRQ----YASALKHISEIIERGIRQHPE 214 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHhhcCCCch-------hHHHHHHHHHhhhh----HHHHHHHHHHHHHhhhhcCCc
Confidence 8899999999999999999999999997665533 33455555555666 999999887777642 32
Q ss_pred hhH--------HHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC-----CHHHHHH
Q 009799 362 PDT--------LKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK-----DPRTYSN 428 (525)
Q Consensus 362 ~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~ 428 (525)
-.+ ....|+... . ......++++..+-++++.|+++.|.+.+.. +.|. +|..+.+
T Consensus 215 lgIGm~tegiDvrsvgNt~~---l------h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLV---L------HQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHN 282 (459)
T ss_pred cCccceeccCchhcccchHH---H------HHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhH
Confidence 110 011111100 0 0011234556667777888888777665532 3332 4556666
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 009799 429 RAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALET 479 (525)
Q Consensus 429 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 479 (525)
++..-. .+++.+...-++=.+.++|--+..+.++-.+|.+..-++-|...
T Consensus 283 ~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 283 QALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred HHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 665433 34566666666667777776566666776677766666665543
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.24 E-value=7.8e-10 Score=87.40 Aligned_cols=132 Identities=23% Similarity=0.235 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC
Q 009799 345 YEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI---ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421 (525)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 421 (525)
.++|...|..++... ..++...+...++......|+. ..+.+.+|.+++..|++++|+..|+.++...|+
T Consensus 8 ~~~a~~~y~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d 80 (145)
T PF09976_consen 8 AEQASALYEQALQAL-------QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD 80 (145)
T ss_pred HHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 455555666555521 2455555666666666677777 567788999999999999999999999998865
Q ss_pred C---HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 009799 422 D---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (525)
Q Consensus 422 ~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (525)
. +.+.+.+|.++...|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4 45788999999999999999999976 34445567788999999999999999999999885
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.23 E-value=1.6e-10 Score=94.38 Aligned_cols=102 Identities=23% Similarity=0.304 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGA 78 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (525)
+..++.+|..+...|++++|+.+|++++...|+. +.++..+|.++...|++++|+..+++++...|++..++..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4578999999999999999999999999887653 5789999999999999999999999999999999999999999
Q ss_pred HHhhhhh--------------HHHHHHHHHHhhccCCCc
Q 009799 79 AHLGLQD--------------YIEAVNSYKKGLDIDPNN 103 (525)
Q Consensus 79 ~~~~~g~--------------~~~A~~~~~~al~~~p~~ 103 (525)
++...|+ +++|++++++++..+|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9998887 688999999999999987
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.23 E-value=1.7e-06 Score=83.38 Aligned_cols=239 Identities=14% Similarity=0.112 Sum_probs=158.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHH
Q 009799 10 NAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEA 89 (525)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 89 (525)
.-....++|.+|+....+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 44577899999999999999999999999999999999999999999888887778888888999999999999999999
Q ss_pred HHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhh
Q 009799 90 VNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQR 169 (525)
Q Consensus 90 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (525)
..+|++++..+|+ .+....+-.++.+.+.+. ..-....+....
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk------------------------------------~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYK------------------------------------KQQKAALQLYKN 139 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHh
Confidence 9999999999999 777777777777776551 112223333334
Q ss_pred CCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHh-H-
Q 009799 170 NPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKER-K- 247 (525)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 247 (525)
.|+..-.+- .....+.......+.... .-.-+-+-......+... +
T Consensus 140 ~pk~~yyfW------sV~Slilqs~~~~~~~~~--------------------------~i~l~LA~~m~~~~l~~~gk~ 187 (932)
T KOG2053|consen 140 FPKRAYYFW------SVISLILQSIFSENELLD--------------------------PILLALAEKMVQKLLEKKGKI 187 (932)
T ss_pred CCcccchHH------HHHHHHHHhccCCccccc--------------------------chhHHHHHHHHHHHhccCCcc
Confidence 443322110 011111111100000000 000000001111111111 0
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHH-Hh-hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccC
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSS-AL-ELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGREL 317 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~l-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 317 (525)
....-....-.++...|.+++|..++.. .. ...+.+..........+...++|.+-.+...+++..++++
T Consensus 188 ~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 188 ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 1111112223456678999999999833 33 3344555666667788888999999999999999998886
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.22 E-value=5.2e-10 Score=91.15 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=91.4
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKG 464 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 464 (525)
....++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.++++++.++|.....+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 46778999999999999999999999999887763 468999999999999999999999999999999999999999
Q ss_pred HHHH-------HhcCHH-------HHHHHHHHHhccCCCCH
Q 009799 465 AIQF-------FLKEYD-------KALETYQEGLKHDPQNQ 491 (525)
Q Consensus 465 ~~~~-------~~g~~~-------~A~~~~~~a~~~~p~~~ 491 (525)
.++. .+|+++ +|+.+|++++..+|++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9998 777766 66666777788888764
No 156
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.22 E-value=8.9e-09 Score=85.11 Aligned_cols=187 Identities=20% Similarity=0.170 Sum_probs=137.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh---HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHH---HHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH---VLYSNRSAAHASLHNYADALADAKKTVELKPDWSK---GYSR 75 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 75 (525)
+..|++.|...++.|+|++|+..|+.+....|.++ .+...++.++++.+++++|+..+++-+.+.|+++. +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 46789999999999999999999999998888754 78889999999999999999999999999887654 5677
Q ss_pred HHHHHhhh--------hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhccc
Q 009799 76 LGAAHLGL--------QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTA 147 (525)
Q Consensus 76 la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
.|.++... .-..+|+..|+..+...|+..-+-.....+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i---------------------------------- 159 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI---------------------------------- 159 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH----------------------------------
Confidence 77775533 224556666666666666653221111111
Q ss_pred CCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCC
Q 009799 148 DPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPES 227 (525)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (525)
T Consensus 160 -------------------------------------------------------------------------------- 159 (254)
T COG4105 160 -------------------------------------------------------------------------------- 159 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhcCHHHHH
Q 009799 228 EPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECI 304 (525)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~ 304 (525)
.......+.--+.+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|.
T Consensus 160 ---------------~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 160 ---------------VKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH
Confidence 00111233334567999999999999999999999987765 467888889999999999987
Q ss_pred HHHHHHHHccccC
Q 009799 305 KDCDKAVERGREL 317 (525)
Q Consensus 305 ~~~~~~l~~~~~~ 317 (525)
..-.-+-...|++
T Consensus 225 ~~~~vl~~N~p~s 237 (254)
T COG4105 225 KTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcCCCC
Confidence 7655444444443
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.21 E-value=6e-11 Score=79.16 Aligned_cols=64 Identities=25% Similarity=0.421 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH
Q 009799 428 NRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 428 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 491 (525)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4677777777777777777777777777777777777777777777777777777777777764
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.20 E-value=3.5e-11 Score=84.91 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=68.6
Q ss_pred cCChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 009799 402 QQKYPEAIQHYTESLRRNPK--DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALET 479 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 479 (525)
+|+|+.|+..++++++..|. +...++.+|.|++..|++++|+..+++ ...+|.++...+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999998885 466778889999999999999999988 778888888888889999999999999999
Q ss_pred HHHH
Q 009799 480 YQEG 483 (525)
Q Consensus 480 ~~~a 483 (525)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8875
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.20 E-value=1e-09 Score=97.40 Aligned_cols=223 Identities=22% Similarity=0.250 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC--C----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDD--E----DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
..-+..+...|..|...+++++|...|.++....- + -...+...+.++... ++++|+.++++++.+.-.. ..
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-G~ 109 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-GR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-T-
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-Cc
Confidence 35577788889999999999999999999976532 1 134566666776555 9999999999999976543 23
Q ss_pred HHHHHHHHHHhhhhHHHh-hhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHH
Q 009799 321 FKMIARALTRKGTALVKM-AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF 399 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (525)
....+.++..+|.+|... ++ +++|+++|++++..... .+.. ......+..+|.++
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d----~e~Ai~~Y~~A~~~y~~------e~~~--------------~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGD----YEKAIEYYQKAAELYEQ------EGSP--------------HSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT------HHHHHHHHHHHHHHHHH------TT-H--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHH------CCCh--------------hhHHHHHHHHHHHH
Confidence 334488999999999988 88 99999999999883221 1111 12245667889999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH-----HHHHHHHHHH
Q 009799 400 FKQQKYPEAIQHYTESLRRNPKD-------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS-----KGYTRKGAIQ 467 (525)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~ 467 (525)
...|+|++|++.|++.....-++ ...++..+.|++..|++..|...+++....+|... .....+-.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999998764322 13567788899999999999999999999988643 2334444444
Q ss_pred HH--hcCHHHHHHHHHHHhccCCCCHHHHH
Q 009799 468 FF--LKEYDKALETYQEGLKHDPQNQELLD 495 (525)
Q Consensus 468 ~~--~g~~~~A~~~~~~a~~~~p~~~~~~~ 495 (525)
.. ...+.+|+..|.+..+++|-...++.
T Consensus 246 ~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 43 35688888888888777764444333
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.18 E-value=3.9e-10 Score=97.13 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=96.9
Q ss_pred hHHHHHHHHH-HhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCC---CHHHHHH
Q 009799 3 DEAKAKGNAA-FSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPD---WSKGYSR 75 (525)
Q Consensus 3 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 75 (525)
...+..|..+ +..|+|++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|+++++.+|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4577888876 66899999999999999999997 589999999999999999999999999998887 4789999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhh
Q 009799 76 LGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSG 109 (525)
Q Consensus 76 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 109 (525)
+|.++..+|++++|...|+++++..|+...+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 9999999999999999999999999998765443
No 161
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.18 E-value=1.1e-08 Score=87.59 Aligned_cols=318 Identities=16% Similarity=0.161 Sum_probs=226.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhcc----CCC--CHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVEL----KPD--WSKGY 73 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~ 73 (525)
......|..++.+.++.+|+..+.+.+..-.+. ...+-.+..+...+|.|++++.+--..+.. +.. ...++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999998875442 244555677888899998887765443332 221 24678
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCccc
Q 009799 74 SRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRS 153 (525)
Q Consensus 74 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (525)
..+++.+.+.-++.+++.+-...+.+-...+.-
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~----------------------------------------------- 119 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ----------------------------------------------- 119 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc-----------------------------------------------
Confidence 888888888888888888777766653322100
Q ss_pred ccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCC
Q 009799 154 YLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEP 233 (525)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (525)
T Consensus 120 -------------------------------------------------------------------------------- 119 (518)
T KOG1941|consen 120 -------------------------------------------------------------------------------- 119 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHH
Q 009799 234 MELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED------ISYLTNRAAVYLEMGKYEECIKDC 307 (525)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~ 307 (525)
.-......+|..+...+.++++++.|+++++...++ ..++..+|.++....++++|+-+.
T Consensus 120 --------------~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 120 --------------LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred --------------ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhh
Confidence 011223446888888899999999999999874433 357889999999999999999999
Q ss_pred HHHHHccccCh---hhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhc
Q 009799 308 DKAVERGRELR---SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIF 384 (525)
Q Consensus 308 ~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 384 (525)
.++.++..+.. ........+++.++..+...|. .-+|.++.+++.++.-. .| .
T Consensus 186 ~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~----LgdA~e~C~Ea~klal~------~G--------------d 241 (518)
T KOG1941|consen 186 CKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR----LGDAMECCEEAMKLALQ------HG--------------D 241 (518)
T ss_pred HhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc----cccHHHHHHHHHHHHHH------hC--------------C
Confidence 99988754432 1222235667788888888888 88888888888773211 00 2
Q ss_pred CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchH-----HHHHHHHHHhcC
Q 009799 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK------DPRTYSNRAACYTKLGAMPE-----GLKDADKCIELD 453 (525)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~-----A~~~~~~al~~~ 453 (525)
.+........+|.+|...|+.+.|..-|+.+...... ...++...|.++....-..+ |++.-.+++++.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 3345667788999999999999999999998865332 24566677777665544444 888888877763
Q ss_pred CC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 454 PT------FSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 454 p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
.. ....+..++.+|..+|..++=...+.++-+
T Consensus 322 ~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 322 SSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 32 235678899999999888777777666544
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.16 E-value=1.4e-09 Score=93.68 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=97.8
Q ss_pred cHHHHHHhhhHH-HhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC---CHHHH
Q 009799 388 IADEEREKGNEF-FKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPT---FSKGY 460 (525)
Q Consensus 388 ~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 460 (525)
.....+..|..+ ...|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++...|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346667777765 66799999999999999999987 589999999999999999999999999998777 57899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009799 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (525)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 497 (525)
+.+|.++..+|++++|...|+++++..|++..+....
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9999999999999999999999999999988655443
No 163
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=4e-10 Score=87.88 Aligned_cols=116 Identities=35% Similarity=0.578 Sum_probs=105.2
Q ss_pred HHHhhhHHHhcCChhHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009799 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKDP-----RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI 466 (525)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 466 (525)
+-.-|+-++..|+|++|..-|..++.+.|..+ .+|.+.|.+.++++.++.|+..+.++|+++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 33457889999999999999999999999754 5788999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009799 467 QFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (525)
Q Consensus 467 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 507 (525)
|.++..+++|++.|+++++.+|...++...+.++--.+...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er 218 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINER 218 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999998888876655543
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.13 E-value=5.7e-09 Score=85.03 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHH
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
...+..++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+..+++++.+.|.....+..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3578889999999999999999999999999887663 4589999999999999999999999999999999888888
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
++.++..+|..+...|+ ++.|+..+.+++.
T Consensus 112 la~i~~~~~~~~~~~g~----~~~A~~~~~~a~~ 141 (168)
T CHL00033 112 MAVICHYRGEQAIEQGD----SEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHHhhHHHHHccc----HHHHHHHHHHHHH
Confidence 88888888877777777 8877777766654
No 165
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=7.1e-09 Score=82.23 Aligned_cols=202 Identities=14% Similarity=0.075 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
+...+..++..|..|-..|-+.-|.--|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|.. -
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-------~ 133 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-------N 133 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-------h
Confidence 456888999999999999999999999999999999999999999999999999999999999999999988 5
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.+..+.|..++-.|+ +.-|.+.+.+..+ .+|++|.--..+-. -...-++
T Consensus 134 Ya~lNRgi~~YY~gR----~~LAq~d~~~fYQ--------------------------~D~~DPfR~LWLYl-~E~k~dP 182 (297)
T COG4785 134 YAHLNRGIALYYGGR----YKLAQDDLLAFYQ--------------------------DDPNDPFRSLWLYL-NEQKLDP 182 (297)
T ss_pred HHHhccceeeeecCc----hHhhHHHHHHHHh--------------------------cCCCChHHHHHHHH-HHhhCCH
Confidence 677788888887788 9999888888877 56666532221111 1123356
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCHHHHHH
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF-------SKGYTRKGAIQFFLKEYDKALE 478 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~ 478 (525)
.+|...+.+-.+...+..+-|+..+. .+|+.. -...++++.....++ ..+++.+|..+...|+.++|..
T Consensus 183 ~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 183 KQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHHHHHHHHHHHhccHhhhhHHHHHH---HHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 66665554433333333344433332 223321 122333333333232 4578899999999999999999
Q ss_pred HHHHHhccCCC
Q 009799 479 TYQEGLKHDPQ 489 (525)
Q Consensus 479 ~~~~a~~~~p~ 489 (525)
.|+-++..+--
T Consensus 259 LfKLaiannVy 269 (297)
T COG4785 259 LFKLAVANNVY 269 (297)
T ss_pred HHHHHHHHhHH
Confidence 99988876543
No 166
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.12 E-value=7.2e-09 Score=81.91 Aligned_cols=133 Identities=20% Similarity=0.153 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
.+...+.........++...+...++..+..+|+. ..+.+.+|.++...|++++|+..|+.++...|+.. . ..
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-l---~~ 85 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-L---KP 85 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-H---HH
Confidence 34445555555567899999999999999999988 56788899999999999999999999999765432 1 15
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.+.++++.++...++ +++|+..++... ..+..+.++..+|.++...|++
T Consensus 86 ~a~l~LA~~~~~~~~----~d~Al~~L~~~~---------------------------~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 86 LARLRLARILLQQGQ----YDEALATLQQIP---------------------------DEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHhcc---------------------------CcchHHHHHHHHHHHHHHCCCH
Confidence 667788888888888 999998886632 2445567788899999999999
Q ss_pred hHHHHHHHHHH
Q 009799 406 PEAIQHYTESL 416 (525)
Q Consensus 406 ~~A~~~~~~al 416 (525)
++|+..|++++
T Consensus 135 ~~A~~~y~~Al 145 (145)
T PF09976_consen 135 DEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhC
Confidence 99999998874
No 167
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.10 E-value=1.8e-09 Score=81.08 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=95.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCH---HHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDWS---KGYSR 75 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 75 (525)
+..++..|...++.|+|.+|++.|+.+....|.. ..+.+.+|.+|+..|++++|+..+++-++++|+++ -+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4678999999999999999999999999998864 48899999999999999999999999999999875 57899
Q ss_pred HHHHHhhhhh---------------HHHHHHHHHHhhccCCCcHHH
Q 009799 76 LGAAHLGLQD---------------YIEAVNSYKKGLDIDPNNEAL 106 (525)
Q Consensus 76 la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 106 (525)
.|.++..+.. ...|...|++.++..|++.-+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999877 889999999999999998654
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.07 E-value=3.6e-10 Score=76.28 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009799 13 FSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGA 78 (525)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (525)
+..|+|++|+..|++++..+|++..+++.+|.|++..|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456667777777777777777767777777777777777777777777777766666665555544
No 169
>PRK11906 transcriptional regulator; Provisional
Probab=99.07 E-value=4.4e-09 Score=94.70 Aligned_cols=111 Identities=7% Similarity=-0.017 Sum_probs=101.6
Q ss_pred hcCCCcHHHHHHhhhHHHhc---------CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 009799 383 IFDPKIADEEREKGNEFFKQ---------QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD 453 (525)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 453 (525)
..+|..+.++..++.+++.. ....+|....+++++++|.|+.++..+|.+....++++.|...|++|+.++
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 48999999999999988754 235678899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH
Q 009799 454 PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQEL 493 (525)
Q Consensus 454 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 493 (525)
|+.+.+++..|.+....|+.++|.+.++++++++|....+
T Consensus 369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 9999999999999999999999999999999999987543
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.05 E-value=4.7e-09 Score=99.91 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC--------ChhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCch
Q 009799 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ--------KYPEAIQHYTESLRR--NPKDPRTYSNRAACYTKLGAMP 440 (525)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 440 (525)
...|+.+|+++++.+|+++.++..++.++.... +...+.....+++.. .|.++.++..+|......|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 334555555555599999999988888775542 234556666666664 6777889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Q 009799 441 EGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 441 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 492 (525)
+|...+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999994 889999999999999999999999999999999885
No 171
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=6.8e-07 Score=73.78 Aligned_cols=195 Identities=13% Similarity=0.172 Sum_probs=141.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhh
Q 009799 256 AGNAAYKKKEFEKAIEHYSSALEL--DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGT 333 (525)
Q Consensus 256 ~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (525)
++.+...-++.++-+.-..+.+.. ...+......-|.++...|++++|.+....... .++....-.
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~------------lE~~Al~Vq 145 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN------------LEAAALNVQ 145 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch------------HHHHHHHHH
Confidence 344444445545544444443332 223334556667889999999999999887433 233444445
Q ss_pred hHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH----hcCChhHHH
Q 009799 334 ALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF----KQQKYPEAI 409 (525)
Q Consensus 334 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~ 409 (525)
++.++.+ .+-|...++++.++. . -..+..+|..+. ..+++.+|.
T Consensus 146 I~lk~~r----~d~A~~~lk~mq~id--------------------------e--d~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 146 ILLKMHR----FDLAEKELKKMQQID--------------------------E--DATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred HHHHHHH----HHHHHHHHHHHHccc--------------------------h--HHHHHHHHHHHHHHhccchhhhhHH
Confidence 6666666 888888888887732 2 223333444433 245689999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHhccCC
Q 009799 410 QHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL-ETYQEGLKHDP 488 (525)
Q Consensus 410 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~p 488 (525)
-+|+..-+..|..+..+...+.|.+.+|+|++|...++.++..++++++++.++-.+-...|.-.++. +.+.+....+|
T Consensus 194 yifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 194 YIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 99999999888899999999999999999999999999999999999999999999999998876654 56667777889
Q ss_pred CCHHHH
Q 009799 489 QNQELL 494 (525)
Q Consensus 489 ~~~~~~ 494 (525)
+++.+.
T Consensus 274 ~h~~vk 279 (299)
T KOG3081|consen 274 EHPFVK 279 (299)
T ss_pred cchHHH
Confidence 887654
No 172
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.04 E-value=4.7e-09 Score=87.67 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC---HHHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYSRL 76 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 76 (525)
+.+++.|..++..|+|..|...|..-++..|++ +.+++.||.+++.+|++++|...|..+++..|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 457899999999999999999999999999985 5899999999999999999999999999988765 6889999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhh
Q 009799 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSG 109 (525)
Q Consensus 77 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 109 (525)
|.+...+|+.++|...|+++++..|+...+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999998876543
No 173
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.02 E-value=1.8e-07 Score=93.84 Aligned_cols=221 Identities=12% Similarity=0.034 Sum_probs=162.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-ccccChhhHHHHHHHHHHhhhhHHHhhhcccchH
Q 009799 268 KAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE-RGRELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (525)
Q Consensus 268 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
+..+-|++.+..+|++.-.|......+++.++.++|.+..++++. +++.-.+....+..+|.++-..|- . -+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~----ee 1514 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---T----EE 1514 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---c----HH
Confidence 344556666666777777777776667777777777777777765 233332333223333333333221 1 34
Q ss_pred HHHHHHHHHHhcCCC-------hhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcC
Q 009799 347 PAIETFQKALTEHRN-------PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN 419 (525)
Q Consensus 347 ~A~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 419 (525)
.-.+.|+++.+.... ..+|...+++.+|.++++.+++...+...+|..+|..++++.+-+.|...+.+|++.-
T Consensus 1515 sl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1515 SLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 444555555554432 2345555666777777777776777889999999999999999999999999999999
Q ss_pred CC--CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Q 009799 420 PK--DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (525)
Q Consensus 420 ~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 495 (525)
|. +.......|.+-++.|+.+.+...|+-.+.-+|...+.|.-+...-.+.|+.+.+...|++++.+.-.-..+..
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 98 77888899999999999999999999999999999999999999999999999999999999987544333333
No 174
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.02 E-value=3.8e-06 Score=74.06 Aligned_cols=169 Identities=31% Similarity=0.415 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHcccc-ChhhHHHHHHHHH
Q 009799 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAA-VYLEMGKYEECIKDCDKAVERGRE-LRSDFKMIARALT 329 (525)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~ 329 (525)
.+...|......+++..++..+..++...+.+.......+. ++...|+++.|...+.+++...|. .. ....+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~ 171 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNE-----LAEALL 171 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc-----hHHHHH
Confidence 34444555556666777777777777766665444444444 666777777777777776554442 00 022222
Q ss_pred HhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCC-cHHHHHHhhhHHHhcCChhHH
Q 009799 330 RKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK-IADEEREKGNEFFKQQKYPEA 408 (525)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 408 (525)
..+..+...+. ++.++..+.+++. ..+. ....+..++..+...+++..|
T Consensus 172 ~~~~~~~~~~~----~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 172 ALGALLEALGR----YEEALELLEKALK--------------------------LNPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred HhhhHHHHhcC----HHHHHHHHHHHHh--------------------------hCcccchHHHHHhhHHHHHcccHHHH
Confidence 22322333333 4445444444444 3333 345555555555555555555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC
Q 009799 409 IQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (525)
Q Consensus 409 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (525)
+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 55555555555554444444554444444455555555555555544
No 175
>PRK11906 transcriptional regulator; Provisional
Probab=99.01 E-value=5.4e-08 Score=87.84 Aligned_cols=170 Identities=10% Similarity=-0.020 Sum_probs=127.8
Q ss_pred HHHHHHHHHhcC---HHHHHHHHHHHH---HccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC
Q 009799 288 TNRAAVYLEMGK---YEECIKDCDKAV---ERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (525)
Q Consensus 288 ~~la~~~~~~~~---~~~A~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (525)
+.+|......+. .+.|+.+|.+++ .++|+....+..++.++......-.. ....+..+|.....++++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~--~~~~~~~~a~~~A~rAve---- 332 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKS--ELELAAQKALELLDYVSD---- 332 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHh----
Confidence 666666655543 568889999999 88888855555444444433210000 001124455555555555
Q ss_pred hhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchH
Q 009799 362 PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPE 441 (525)
Q Consensus 362 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 441 (525)
.+|.++.++..+|.++...++++.|+..|++++.++|+.+.+|+..|.+....|+.++
T Consensus 333 ----------------------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 333 ----------------------ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred ----------------------cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcCHHHHHHHHHHHhc
Q 009799 442 GLKDADKCIELDPTFSKGYTRKGAI-QFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~ 485 (525)
|...++++++++|....+-...-.+ .+-....++|+..|-+--+
T Consensus 391 a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 9999999999999876655444444 4455667888888866443
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.00 E-value=4.6e-08 Score=93.25 Aligned_cols=154 Identities=10% Similarity=-0.028 Sum_probs=109.2
Q ss_pred hhcCCCCHHHH--HHHHHHHHHhcC---HHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHH-HhhhcccchHHHHH
Q 009799 277 LELDDEDISYL--TNRAAVYLEMGK---YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV-KMAKCSKDYEPAIE 350 (525)
Q Consensus 277 l~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~ 350 (525)
...-|.++.+| +..|.-+...++ ...|+.+|+++++++|++...+..++.++........ .... ...+..
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~----l~~a~~ 405 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQ----LAALST 405 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHH----HHHHHH
Confidence 34556666554 455666665544 7799999999999999985444333333222111000 0001 223333
Q ss_pred HHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 009799 351 TFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRA 430 (525)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 430 (525)
...+++.. ..+|..+.++..+|......|++++|...+++++.++| +..+|..+|
T Consensus 406 ~~~~a~al------------------------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG 460 (517)
T PRK10153 406 ELDNIVAL------------------------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLG 460 (517)
T ss_pred HHHHhhhc------------------------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHH
Confidence 33333221 13667788899999999999999999999999999999 588999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhcCCCCHHH
Q 009799 431 ACYTKLGAMPEGLKDADKCIELDPTFSKG 459 (525)
Q Consensus 431 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (525)
.++...|++++|+..|++|+.++|.++..
T Consensus 461 ~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 461 KVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 99999999999999999999999998753
No 177
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.99 E-value=1.8e-07 Score=80.41 Aligned_cols=252 Identities=17% Similarity=0.239 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
...+..|.-++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.|++++..--..+....+..+. .....+
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds-~~~~ea 85 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS-DFLLEA 85 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3455668888899999999999999887654433 344455677888899888877766555544332222 223677
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC-------------hhHHHHhchHHHHHHHHHHHhhcCCCc------
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN-------------PDTLKKLNEAEKAKKELEQQEIFDPKI------ 388 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~~~~~~------ 388 (525)
+.+++..+....+ +.+++.+-+..+..... ......++.++++++.|+.++....++
T Consensus 86 ~lnlar~~e~l~~----f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 86 YLNLARSNEKLCE----FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 8888888888888 88898888887765432 124456788899999999888754332
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC----C------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcC-----
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK----D------PRTYSNRAACYTKLGAMPEGLKDADKCIELD----- 453 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 453 (525)
..++..+|..+....++++|.-+..++.++... + ..+++.++..+..+|+.-.|.++.+++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 356788999999999999999999999876432 1 3467889999999999999999999998762
Q ss_pred -CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHhhhh
Q 009799 454 -PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ------NQELLDGVRRCVQQINKA 507 (525)
Q Consensus 454 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~ 507 (525)
+-.......+|.+|...|+.+.|..-|++|...... ..+++...++++..+.-.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~ 302 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQ 302 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 335667888999999999999999999999875322 245666677777665543
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.99 E-value=1.8e-09 Score=72.85 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=45.8
Q ss_pred HHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009799 434 TKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRR 499 (525)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 499 (525)
+..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++.++..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456677777777777777777777777777777777777777777777777777776666665554
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.98 E-value=3e-07 Score=76.20 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
.+..++..|...++.|++++|+..|+.+....|.++ .+...++.++++.+++++|+...++.+.+.|.++.. .
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----D 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh----h
Confidence 567899999999999999999999999999988764 688999999999999999999999999999998765 4
Q ss_pred HHHHHhhhhHHHhhhc----ccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh
Q 009799 326 RALTRKGTALVKMAKC----SKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (525)
.+++..|.++...-.. ..-...|+..|+..+...|++....... .++.........--..+|..|.+
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~---------~~i~~~~d~LA~~Em~IaryY~k 179 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK---------ARIVKLNDALAGHEMAIARYYLK 179 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666654332211 1114566777777777666643111000 00000000111222345566666
Q ss_pred cCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCchHHHHH
Q 009799 402 QQKYPEAIQHYTESLRRNPKDP---RTYSNRAACYTKLGAMPEGLKD 445 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~ 445 (525)
.|.+..|+..++.+++..|+.. .++..+..+|..+|-.++|...
T Consensus 180 r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 180 RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 6666666666666666555432 4455555556666655555544
No 180
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.4e-10 Score=88.43 Aligned_cols=99 Identities=25% Similarity=0.473 Sum_probs=95.0
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009799 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (525)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (525)
+++.+.+.|+.++....|..|+..|.++|.++|..+..+.+.+.|++++++++.+...+.++++++|+...+++.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcc
Q 009799 81 LGLQDYIEAVNSYKKGLDI 99 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~ 99 (525)
.....|++|+..++++..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhhccccHHHHHHHHHHHH
Confidence 9999999999999999654
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.97 E-value=3.3e-09 Score=72.69 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=47.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 009799 430 AACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVR 498 (525)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 498 (525)
..+|...+++++|+.++++++..+|+++..+..+|.++..+|++.+|...|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456666777777777777777777777777777777777777777777777777777776666555443
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.96 E-value=1.8e-08 Score=74.85 Aligned_cols=97 Identities=21% Similarity=0.111 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCC---CHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPD---WSKGYSR 75 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 75 (525)
++.+++.|..+-..|+.++|+..|++++...+.. ..+++.+|.++..+|++++|+..+++++...|+ +......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4678999999999999999999999999975443 579999999999999999999999999999888 7788888
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhc
Q 009799 76 LGAAHLGLQDYIEAVNSYKKGLD 98 (525)
Q Consensus 76 la~~~~~~g~~~~A~~~~~~al~ 98 (525)
++.++...|++++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999988775
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.96 E-value=3.6e-09 Score=72.54 Aligned_cols=69 Identities=28% Similarity=0.437 Sum_probs=45.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009799 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLG 77 (525)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (525)
...++..++|++|+..+++++..+|+++..+..+|.++..+|++.+|+..++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 345666666777777777777666666666666777777777777777777776666666665544443
No 184
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=8.3e-07 Score=89.32 Aligned_cols=169 Identities=15% Similarity=0.035 Sum_probs=131.1
Q ss_pred cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcc
Q 009799 263 KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (525)
Q Consensus 263 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
-|.-+...+.|++|-+.+ +...++..|..+|...+++++|.++++..++...+. ..+|...+..+....+
T Consensus 1510 yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~-------~~vW~~y~~fLl~~ne-- 1579 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT-------RKVWIMYADFLLRQNE-- 1579 (1710)
T ss_pred hCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch-------hhHHHHHHHHHhcccH--
Confidence 355566677788777654 446778888889999999999999999998877654 4556666666666666
Q ss_pred cchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCC--cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCC
Q 009799 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK--IADEEREKGNEFFKQQKYPEAIQHYTESLRRNP 420 (525)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 420 (525)
-+.|...+.+++. .-|. +.+.....|.+-++.|+.+.+..+|+..+..+|
T Consensus 1580 --~~aa~~lL~rAL~--------------------------~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP 1631 (1710)
T KOG1070|consen 1580 --AEAARELLKRALK--------------------------SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP 1631 (1710)
T ss_pred --HHHHHHHHHHHHh--------------------------hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc
Confidence 7888888888888 3443 667777788889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q 009799 421 KDPRTYSNRAACYTKLGAMPEGLKDADKCIELD--PTFSKGYTRKGAIQFF 469 (525)
Q Consensus 421 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 469 (525)
.-.++|.-+...-.+.|+.+.+...|++++.+. |.....++..=.-|.+
T Consensus 1632 KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1632 KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 999999999999999999999999999998764 5555555555444444
No 185
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.95 E-value=7e-07 Score=78.84 Aligned_cols=204 Identities=29% Similarity=0.361 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALE--LDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 326 (525)
........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..+..++...+......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 132 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAE----- 132 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHH-----
Confidence 356777888899999999999999999987 7888889999999999999999999999999999777652221
Q ss_pred HHHHhhh-hHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCC---CcHHHHHHhhhHHHhc
Q 009799 327 ALTRKGT-ALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP---KIADEEREKGNEFFKQ 402 (525)
Q Consensus 327 ~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 402 (525)
...+. ++...++ ++.|...+.+++. ..| .........+..+...
T Consensus 133 --~~~~~~~~~~~~~----~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~ 180 (291)
T COG0457 133 --ALLALGALYELGD----YEEALELYEKALE--------------------------LDPELNELAEALLALGALLEAL 180 (291)
T ss_pred --HHHHHHHHHHcCC----HHHHHHHHHHHHh--------------------------cCCCccchHHHHHHhhhHHHHh
Confidence 22222 5556666 8888888888866 333 3455666666778889
Q ss_pred CChhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 009799 403 QKYPEAIQHYTESLRRNPK-DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQ 481 (525)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (525)
++++.|+..+.+++...+. ....+..++.++...++++.|...+..++...|.....+..++..+...|.++++...+.
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999 699999999999999999999999999999999988888889988888888999999999
Q ss_pred HHhccCCC
Q 009799 482 EGLKHDPQ 489 (525)
Q Consensus 482 ~a~~~~p~ 489 (525)
+++...|.
T Consensus 261 ~~~~~~~~ 268 (291)
T COG0457 261 KALELDPD 268 (291)
T ss_pred HHHHhCcc
Confidence 99999997
No 186
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.95 E-value=2.5e-08 Score=90.60 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=91.4
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (525)
.+| ++...++.++...++..+|+..+.++++..|.+...+...+..+...++++.|+...++++...|++...|+.|
T Consensus 198 ~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~L 274 (395)
T PF09295_consen 198 RDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQL 274 (395)
T ss_pred cCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 554 46677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcc
Q 009799 464 GAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
+.+|..+|+++.|+..+..+=-.
T Consensus 275 a~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 275 AECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999999887755333
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.93 E-value=3.3e-08 Score=73.47 Aligned_cols=96 Identities=21% Similarity=0.109 Sum_probs=86.9
Q ss_pred HHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC---CHHHHHHH
Q 009799 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPT---FSKGYTRK 463 (525)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 463 (525)
.+++.+|.++-..|+.++|+..|++++...... ..++..+|..+..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 567889999999999999999999999976544 568899999999999999999999999999888 77888889
Q ss_pred HHHHHHhcCHHHHHHHHHHHhc
Q 009799 464 GAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~ 485 (525)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 188
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=8.3e-07 Score=79.52 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHH-hccCCc--------hhHHHHHHHHHHhhcccHHHHHHHHHHhhcc-------
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEA-ISLSPD--------NHVLYSNRSAAHASLHNYADALADAKKTVEL------- 65 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 65 (525)
+..++.+++.++..|+|.+|.+.+... +...|. .-..|.++|.+++++|.|.-+..+|.+++..
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 356888999999999999999988764 222332 2355789999999999999999999999951
Q ss_pred --CC---------CCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhh
Q 009799 66 --KP---------DWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (525)
Q Consensus 66 --~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (525)
.| ...+..++.|..|...|+.-.|.++|.++......+|..|..++.+-....+
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 12 3457899999999999999999999999999999999999999998766543
No 189
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=4.2e-08 Score=82.07 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=97.9
Q ss_pred HHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 009799 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF---SKGYTRKGA 465 (525)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~ 465 (525)
.+..|.-++..|+|..|...|..-++..|++ +.+++.||.+++.+|++++|...|..+++..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999999986 6899999999999999999999999999987764 688999999
Q ss_pred HHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009799 466 IQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (525)
Q Consensus 466 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 497 (525)
+...+|+.++|...|+++++..|+.+.+...-
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999998766543
No 190
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.90 E-value=6.2e-08 Score=72.98 Aligned_cols=108 Identities=22% Similarity=0.319 Sum_probs=96.9
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH---HHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS---KGYT 461 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 461 (525)
.+..++..|...+..|+|.+|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++-++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678889999999999999999999999998865 57889999999999999999999999999998875 5899
Q ss_pred HHHHHHHHhcC---------------HHHHHHHHHHHhccCCCCHHHHH
Q 009799 462 RKGAIQFFLKE---------------YDKALETYQEGLKHDPQNQELLD 495 (525)
Q Consensus 462 ~la~~~~~~g~---------------~~~A~~~~~~a~~~~p~~~~~~~ 495 (525)
..|.+++.+.. ..+|...|++.++..|++..+-.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999877 88999999999999999876543
No 191
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=3e-06 Score=80.90 Aligned_cols=202 Identities=13% Similarity=0.076 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHH
Q 009799 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTR 330 (525)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 330 (525)
..|..-|..+...|+.+.|+.+|..+- -|+.+..+..-+|+.++|..+-++.- + --+.+.
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~esg-----d-------~AAcYh 972 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAEESG-----D-------KAACYH 972 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHHhcc-----c-------HHHHHH
Confidence 445556777788888888888888753 35566666667777777766554432 1 234455
Q ss_pred hhhhHHHhhhcccchHHHHHHHHHHHhcCCC------hhHHH---------HhchHHHHHHHHHHHhhcCCCcHHHHHHh
Q 009799 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRN------PDTLK---------KLNEAEKAKKELEQQEIFDPKIADEEREK 395 (525)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 395 (525)
++..|...|+ +.+|+..|.++-..... .+.-. .-.+...|-.+|+..- . ....-
T Consensus 973 laR~YEn~g~----v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~---~~~~A 1041 (1416)
T KOG3617|consen 973 LARMYENDGD----VVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG----G---YAHKA 1041 (1416)
T ss_pred HHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----h---hhhHH
Confidence 6666666666 77777777665442111 11000 0011122222222110 0 00011
Q ss_pred hhHHHhcCChhHHHHHHHHH-----H-----hcCC-CCHHHHHHHHHHHHHcCCchHHHHHHH------HHHhcC-----
Q 009799 396 GNEFFKQQKYPEAIQHYTES-----L-----RRNP-KDPRTYSNRAACYTKLGAMPEGLKDAD------KCIELD----- 453 (525)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~a-----l-----~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~------~al~~~----- 453 (525)
..+|.+.|.+.+|++.--+. + .++| .+|.++..-+..+....+|++|...+- .|+.+.
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv 1121 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV 1121 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 12344455555555433211 1 2344 367778888888888888998887654 344331
Q ss_pred -----------CC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 454 -----------PT---------FSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 454 -----------p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
|. ...++..+|.++.++|.|-.|-+-|.+|
T Consensus 1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 11 1347788999999999999888877765
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.85 E-value=2.4e-05 Score=68.47 Aligned_cols=301 Identities=14% Similarity=0.086 Sum_probs=201.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCc--hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC-HHHHHHHHHHHhh
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPD--NHVLYSNRSAAHASLHNYADALADAKKTVELKPDW-SKGYSRLGAAHLG 82 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 82 (525)
+..|.+.--.|+-..|.++-.++-..-.. .+-++..-+..-+-.|+++.|.+-|+-.+. +|.. .-.+-.+-.--..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 45677777788888888888877644333 345556667777888999999998887764 3322 1122222223346
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
.|..+.|+.+-+++....|.-+.++..........|++ ++++..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdW------------------------------------d~AlkL 210 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDW------------------------------------DGALKL 210 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCCh------------------------------------HHHHHH
Confidence 78888999998998888888887777666665555554 122211
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
+.......- ++ .
T Consensus 211 vd~~~~~~v---------------ie-----------------------------------------------------~ 222 (531)
T COG3898 211 VDAQRAAKV---------------IE-----------------------------------------------------K 222 (531)
T ss_pred HHHHHHHHh---------------hc-----------------------------------------------------h
Confidence 111100000 00 0
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
.......+..+...+... -..+...|...-.+++++.|+-...-..-+..+++.|+..++-.+++.+.+..|.- ..
T Consensus 223 ~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~i-- 298 (531)
T COG3898 223 DVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-DI-- 298 (531)
T ss_pred hhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HH--
Confidence 000001111222222222 23468899999999999999999999999999999999999999999999988852 11
Q ss_pred HHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhc
Q 009799 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ 402 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 402 (525)
+..|...-. -+.++.-++++-. ...+.|++.+.....+..-+..
T Consensus 299 --a~lY~~ar~-----------gdta~dRlkRa~~-----------------------L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 299 --ALLYVRARS-----------GDTALDRLKRAKK-----------------------LESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred --HHHHHHhcC-----------CCcHHHHHHHHHH-----------------------HHhcCccchHHHHHHHHHHHhc
Confidence 333332221 4445555554433 2227899999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCchHHHHHHHHHHhc
Q 009799 403 QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL-GAMPEGLKDADKCIEL 452 (525)
Q Consensus 403 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 452 (525)
|++..|..--+.+....|. ..++..++.+-... |+-.++..++-+++.-
T Consensus 343 ~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 343 GEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999999999999985 45677788887665 9999999999999875
No 193
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.82 E-value=9.8e-08 Score=69.11 Aligned_cols=102 Identities=24% Similarity=0.302 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC----HHHHHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW----SKGYSRLGA 78 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 78 (525)
..+-.+|..+-..|+.+.|++.|.+++..-|..+.+|.+++.++.-+|+.++|++.+++++++.... -.++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3566789999999999999999999999999999999999999999999999999999999987543 357899999
Q ss_pred HHhhhhhHHHHHHHHHHhhccCCCcH
Q 009799 79 AHLGLQDYIEAVNSYKKGLDIDPNNE 104 (525)
Q Consensus 79 ~~~~~g~~~~A~~~~~~al~~~p~~~ 104 (525)
+|..+|+-+.|...|+.+-++.....
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 99999999999999999877765543
No 194
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.82 E-value=8.1e-09 Score=92.43 Aligned_cols=119 Identities=29% Similarity=0.499 Sum_probs=113.3
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009799 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (525)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (525)
+|+.+-.+|..++..+.|+.|+..|.++|+++|+.+..+-+++.++++.+++..|+..+.++++.+|....+|++.|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhh
Q 009799 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (525)
...+++.+|...|+....+.|+++.+...+..+-....+
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888766655
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.82 E-value=1.9e-06 Score=67.07 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=127.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhch
Q 009799 291 AAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNE 370 (525)
Q Consensus 291 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (525)
+....+.=+++....-..+.+...|.. .-.++++....+.|+ +.+|...|++++.-
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv--------qnr~rLa~al~elGr----~~EA~~hy~qalsG------------ 118 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV--------QNRYRLANALAELGR----YHEAVPHYQQALSG------------ 118 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH--------HHHHHHHHHHHHhhh----hhhhHHHHHHHhcc------------
Confidence 344445556777777777777777763 445566666777777 99999999999873
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 009799 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK--DPRTYSNRAACYTKLGAMPEGLKDADK 448 (525)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (525)
....++..+..++...+..+++..|...+++..+.+|. .|+....+|+++...|.+.+|...|+.
T Consensus 119 -------------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~ 185 (251)
T COG4700 119 -------------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV 185 (251)
T ss_pred -------------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH
Confidence 45678889999999999999999999999999999885 578889999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 009799 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (525)
Q Consensus 449 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (525)
++...|+ +.+....+..+.++|+..+|..-+..+.
T Consensus 186 a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 186 AISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999887 7788888999999998887766554443
No 196
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.81 E-value=2.2e-05 Score=76.04 Aligned_cols=292 Identities=13% Similarity=0.046 Sum_probs=189.4
Q ss_pred hhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCC
Q 009799 47 ASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSP 126 (525)
Q Consensus 47 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 126 (525)
...+++.+|+..+.+.++..|+...+....|.++.++|+.++|..+++..-...+++....
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL------------------- 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL------------------- 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH-------------------
Confidence 5678999999999999999999999999999999999999999988877665555543222
Q ss_pred CCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCcccc
Q 009799 127 PADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEM 206 (525)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (525)
T Consensus 81 -------------------------------------------------------------------------------- 80 (932)
T KOG2053|consen 81 -------------------------------------------------------------------------------- 80 (932)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHH
Q 009799 207 QDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISY 286 (525)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 286 (525)
-.+-.+|...+++++|..+|++++..+|+ ...
T Consensus 81 -----------------------------------------------q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel 112 (932)
T KOG2053|consen 81 -----------------------------------------------QFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL 112 (932)
T ss_pred -----------------------------------------------HHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence 22345677789999999999999999999 888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC-CCh---
Q 009799 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH-RNP--- 362 (525)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~--- 362 (525)
...+-.+|.+.+.|.+-.+.--+..+..|+.+-.+.....+... +.--........-..-|...+++.++.. +-.
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq-s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a 191 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ-SIFSENELLDPILLALAEKMVQKLLEKKGKIESEA 191 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH-hccCCcccccchhHHHHHHHHHHHhccCCccchHH
Confidence 88899999999998887777777777778765433322222211 1000000000000233455566666555 111
Q ss_pred ------hHHHHhchHHHHHHHHHH--HhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHH------
Q 009799 363 ------DTLKKLNEAEKAKKELEQ--QEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSN------ 428 (525)
Q Consensus 363 ------~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------ 428 (525)
.++...+.+++|...+.. +-...+.+...-...+..+...++|.+-.+...+++...+++...+..
T Consensus 192 E~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klL 271 (932)
T KOG2053|consen 192 EIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLL 271 (932)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 145667889999988833 233445555555677788888899999999999999988887211111
Q ss_pred -------HHHHHHHcCCchHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 429 -------RAACYTKLGAMPEGLKDADKCIELDPTFSK-GYTRKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 429 -------la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
.+..+...+..+..++..++.+......|. +++.+-.-+...|+.+++...|-+-+-.
T Consensus 272 e~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~ 337 (932)
T KOG2053|consen 272 ELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD 337 (932)
T ss_pred HhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC
Confidence 111122223344445555555544333332 3333333345678888877666554433
No 197
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.80 E-value=6.1e-08 Score=75.30 Aligned_cols=96 Identities=25% Similarity=0.330 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHhhccc----------HHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh--
Q 009799 18 YEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHN----------YADALADAKKTVELKPDWSKGYSRLGAAHLGLQD-- 85 (525)
Q Consensus 18 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 85 (525)
|+.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++++.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999887744 5678889999999999999999999999988764
Q ss_pred ---------HHHHHHHHHHhhccCCCcHHHHhhHHhH
Q 009799 86 ---------YIEAVNSYKKGLDIDPNNEALKSGLADA 113 (525)
Q Consensus 86 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (525)
|++|..+|+++...+|++...+..|...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 8899999999999999998887776654
No 198
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.79 E-value=2.1e-07 Score=84.72 Aligned_cols=124 Identities=20% Similarity=0.305 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHH
Q 009799 286 YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTL 365 (525)
Q Consensus 286 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 365 (525)
....+..++...++++.|+..+++..+.+|+. ...++.++...++ -.+|+..+++++.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev----------~~~LA~v~l~~~~----E~~AI~ll~~aL~-------- 228 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEV----------AVLLARVYLLMNE----EVEAIRLLNEALK-------- 228 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcH----------HHHHHHHHHhcCc----HHHHHHHHHHHHH--------
Confidence 33444556666789999999999999888752 2224444444555 7888888888887
Q ss_pred HHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 009799 366 KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKD 445 (525)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 445 (525)
..|.+...+...+..+...++++.|+.+.++++...|++...|+.|+.+|..+|+++.|+..
T Consensus 229 ------------------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 229 ------------------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred ------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 009799 446 ADKC 449 (525)
Q Consensus 446 ~~~a 449 (525)
++.+
T Consensus 291 LNs~ 294 (395)
T PF09295_consen 291 LNSC 294 (395)
T ss_pred HhcC
Confidence 8754
No 199
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.76 E-value=1.2e-06 Score=63.64 Aligned_cols=105 Identities=22% Similarity=0.230 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (525)
....+-..|......|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|+..+++++++......+. ..++
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta---cqa~ 118 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA---CQAF 118 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH---HHHH
Confidence 3445566788899999999999999999999999999999999999999999999999999999876554433 7889
Q ss_pred HHhhhhHHHhhhcccchHHHHHHHHHHHhcCC
Q 009799 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (525)
...|.+|...|+ .+.|...|..+-++..
T Consensus 119 vQRg~lyRl~g~----dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 119 VQRGLLYRLLGN----DDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHhCc----hHHHHHhHHHHHHhCC
Confidence 999999999999 9999999999887543
No 200
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.3e-08 Score=82.20 Aligned_cols=104 Identities=40% Similarity=0.606 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccC---Cc-hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLS---PD-NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLG 77 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (525)
|+.+...|+.|+...+|..|+..|.+.|... |+ +...|.++|.|.+..|+|..|+..+.+++.++|.+..++++-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 6788999999999999999999999999873 43 5688999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhhccCCCcHH
Q 009799 78 AAHLGLQDYIEAVNSYKKGLDIDPNNEA 105 (525)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 105 (525)
.|++.+.++.+|..+.+..+.++.+...
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 9999999999999999999887665543
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.73 E-value=0.00013 Score=63.99 Aligned_cols=290 Identities=15% Similarity=0.111 Sum_probs=194.1
Q ss_pred HHHHHHhhcccHHHHHHHHHHhhccCCCC--HHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHh
Q 009799 41 NRSAAHASLHNYADALADAKKTVELKPDW--SKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (525)
Q Consensus 41 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (525)
..|.+-...|+-..|.+.-.++-++-..+ +-++..-++.-...|+++.|.+-|+..+. +|+.. ...|-.+|....
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAq 165 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQ 165 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHH
Confidence 35667777889999999988887554444 44556667888889999999999998875 44322 223333333321
Q ss_pred hcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCC
Q 009799 119 ASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGP 198 (525)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (525)
+. .-.+.+.
T Consensus 166 r~---------------------------------GareaAr-------------------------------------- 174 (531)
T COG3898 166 RL---------------------------------GAREAAR-------------------------------------- 174 (531)
T ss_pred hc---------------------------------ccHHHHH--------------------------------------
Confidence 11 0001111
Q ss_pred CCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhh
Q 009799 199 TGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALE 278 (525)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 278 (525)
..........|.-.+++...-......|+|+.|++..+....
T Consensus 175 --------------------------------------~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 175 --------------------------------------HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred --------------------------------------HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 122222333344555555555667789999999999987654
Q ss_pred c---CCCCH---H--HHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHH
Q 009799 279 L---DDEDI---S--YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIE 350 (525)
Q Consensus 279 ~---~p~~~---~--~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 350 (525)
. .++.. . .+...+... -..+...|...-..++++.|+..+....-+.+++.-|+ ..++-.
T Consensus 217 ~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~-----------~rKg~~ 284 (531)
T COG3898 217 AKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN-----------LRKGSK 284 (531)
T ss_pred HHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc-----------hhhhhh
Confidence 3 22221 1 122222222 23468899999999999999987766555666655555 888888
Q ss_pred HHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHH---HHHhcCCCCHHHHH
Q 009799 351 TFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYT---ESLRRNPKDPRTYS 427 (525)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~al~~~~~~~~~~~ 427 (525)
.++.+-+..|.++ ++..|....--+.++.-++ +...+.|++.....
T Consensus 285 ilE~aWK~ePHP~-------------------------------ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~ 333 (531)
T COG3898 285 ILETAWKAEPHPD-------------------------------IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSL 333 (531)
T ss_pred HHHHHHhcCCChH-------------------------------HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHH
Confidence 8888888554432 2233333333334444444 44567899999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHhcc
Q 009799 428 NRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFL-KEYDKALETYQEGLKH 486 (525)
Q Consensus 428 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 486 (525)
..+..-+.-|++..|..--+.+....|. ..++..++.+-... |+-.++..++-++++-
T Consensus 334 ~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 334 AVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999999999999999999999997 56778888888765 9999999999999874
No 202
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.8e-05 Score=64.19 Aligned_cols=186 Identities=19% Similarity=0.219 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-----CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD-----DED-ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
.+-++.+..-|..|...++|..|=..|-++-... .++ ...+...+.+| +.+++.+|+.++++++++..+. ..
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~-Gr 108 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM-GR 108 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh-hH
Confidence 3566777778888888899999988888876542 122 34455555555 4459999999999999987654 23
Q ss_pred HHHHHHHHHHhhhhHHHh-hhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHH
Q 009799 321 FKMIARALTRKGTALVKM-AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF 399 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (525)
+..-+.-+..+|.+|..- .+ +++|+.+|+.+-+.....+ ....-...+...+..-
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d----~ekaI~~YE~Aae~yk~ee--------------------s~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQD----FEKAIAHYEQAAEYYKGEE--------------------SVSSANKCLLKVAQYA 164 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHH----HHHHHHHHHHHHHHHcchh--------------------hhhhHHHHHHHHHHHH
Confidence 333366677788877654 66 8888888888877443322 1222234556667777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHH
Q 009799 400 FKQQKYPEAIQHYTESLRRNPKDP-------RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK 458 (525)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (525)
...++|.+|+..|++.....-+++ ..++.-|.|++...+.-.+...+++..+++|....
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 788999999999999887766554 34567788888889988899999999999998654
No 203
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.2e-07 Score=76.93 Aligned_cols=104 Identities=25% Similarity=0.356 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CCch----------hHHHHHHHHHHhhcccHHHHHHHHHHhhc
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISL--------SPDN----------HVLYSNRSAAHASLHNYADALADAKKTVE 64 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 64 (525)
..+...|+.+|..|+|.+|...|..|+.. .|.. ...+.+++.|++..|+|-++++.+...+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999753 4443 36788999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHH
Q 009799 65 LKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEAL 106 (525)
Q Consensus 65 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 106 (525)
.+|.+..+++.+|.++...=+..+|...|.++++++|.-..+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999975443
No 204
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=6e-06 Score=74.21 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=71.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHh-hccC------CCC--HHHHHHHHH
Q 009799 8 KGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKT-VELK------PDW--SKGYSRLGA 78 (525)
Q Consensus 8 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~------p~~--~~~~~~la~ 78 (525)
+-..+++..+...+....+.+..+..+.+.+++..+..++-.|++.+|.+.+... +... |.. .-.|.++|-
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 3345567777788888888888887788899999999999999999999887653 2222 222 224578999
Q ss_pred HHhhhhhHHHHHHHHHHhhc
Q 009799 79 AHLGLQDYIEAVNSYKKGLD 98 (525)
Q Consensus 79 ~~~~~g~~~~A~~~~~~al~ 98 (525)
+++++|.|.-+..+|.++++
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred EeeehhhHHHHHHHHHHHHH
Confidence 99999999999999999986
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.72 E-value=7.6e-06 Score=63.78 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=125.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhhhhhHH
Q 009799 9 GNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVE-LKPDWSKGYSRLGAAHLGLQDYI 87 (525)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~ 87 (525)
+...-+.=+.+.+.....+.+...|. ..-.+.+|..+..+|++.+|...|++++. +...++..++.++...+..+++.
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 33444555666777777777777776 45677899999999999999999999886 45678888999999999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHH
Q 009799 88 EAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDI 167 (525)
Q Consensus 88 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (525)
.|...+++..+.+|...
T Consensus 142 ~a~~tLe~l~e~~pa~r--------------------------------------------------------------- 158 (251)
T COG4700 142 AAQQTLEDLMEYNPAFR--------------------------------------------------------------- 158 (251)
T ss_pred HHHHHHHHHhhcCCccC---------------------------------------------------------------
Confidence 99999999988776531
Q ss_pred hhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhH
Q 009799 168 QRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERK 247 (525)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (525)
T Consensus 159 -------------------------------------------------------------------------------- 158 (251)
T COG4700 159 -------------------------------------------------------------------------------- 158 (251)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER 313 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 313 (525)
.++.....|..+...|.+.+|...|+.++...|+ +......+..+..+|+..+|..-+..+.+.
T Consensus 159 -~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 159 -SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred -CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1223456688899999999999999999999887 667777888999999988887776666553
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.71 E-value=6.9e-08 Score=87.02 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=58.2
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPR---TYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
.+|+++..++++|.+|+..|+|++|+..|+++++++|++.. +|+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57788888888888888888888888888888888888874 4888888888888888888888888886
No 207
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.69 E-value=1.9e-07 Score=72.57 Aligned_cols=95 Identities=17% Similarity=0.297 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA----------MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE--- 472 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--- 472 (525)
+.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|+.|+.++|+..++++.+|.+|..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 344444444444455544444444444433322 3445555566666666666666666666655443
Q ss_pred --------HHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 009799 473 --------YDKALETYQEGLKHDPQNQELLDGVRRC 500 (525)
Q Consensus 473 --------~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 500 (525)
|++|..+|++|...+|+|...+..|..+
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 6777788888888888877666655544
No 208
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00026 Score=65.01 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=72.7
Q ss_pred HHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHH
Q 009799 26 TEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEA 105 (525)
Q Consensus 26 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 105 (525)
++-++.+|.+..+|+.+-.-+..+ -+++..+.|++.+...|..+.+|.......+..++|+.....|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 667889999999999998887777 9999999999999999999999999999999999999999999999864332 45
Q ss_pred HHhhHH
Q 009799 106 LKSGLA 111 (525)
Q Consensus 106 ~~~~l~ 111 (525)
.|....
T Consensus 88 LW~lYl 93 (656)
T KOG1914|consen 88 LWKLYL 93 (656)
T ss_pred HHHHHH
Confidence 554433
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.68 E-value=7.1e-08 Score=86.93 Aligned_cols=70 Identities=19% Similarity=0.116 Sum_probs=65.4
Q ss_pred cCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHH---HHHHHHHHhhhhhHHHHHHHHHHhhccC
Q 009799 31 LSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKG---YSRLGAAHLGLQDYIEAVNSYKKGLDID 100 (525)
Q Consensus 31 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 100 (525)
.+|+++.+++++|.+|+.+|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478889999999999999999999999999999999999855 9999999999999999999999999973
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.65 E-value=2.2e-08 Score=69.59 Aligned_cols=64 Identities=30% Similarity=0.522 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHhc----C---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 423 PRTYSNRAACYTKLGAMPEGLKDADKCIEL----D---PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 423 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
..++.++|.+|..+|++++|+.+|++++.+ . |....++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666666666666666665543 1 112345566666666666666666666666543
No 211
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.64 E-value=7e-06 Score=75.45 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=95.0
Q ss_pred hhHHHhcCChhHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q 009799 396 GNEFFKQQKYPEAIQHYTESLRRNPKDP-RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYD 474 (525)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 474 (525)
|..+...|+...|+.++..++...|... ....++|.+....|-...|-..+.+++.++...|-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 3344568999999999999999988643 457899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009799 475 KALETYQEGLKHDPQNQELLDGVRRCVQ 502 (525)
Q Consensus 475 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 502 (525)
.|++.|+.|++++|++++....|..+..
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999998887766544
No 212
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.00042 Score=62.74 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHhcC--CHHHHHHHHHHHhccCCch---hHHHHHHHHHHh-hcccHHHHHHHHHHhhccC---CCC---
Q 009799 2 ADEAKAKGNAAFSSG--DYEAAVRHFTEAISLSPDN---HVLYSNRSAAHA-SLHNYADALADAKKTVELK---PDW--- 69 (525)
Q Consensus 2 a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~--- 69 (525)
+.++...|..+...| +...++++++..+...|.+ +.....+|.+++ ..++++.|...++++..+. |+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 567888888888888 8899999999998887764 456677777654 5778899999999887553 433
Q ss_pred -HHHHHHHHHHHhhhh-hHHHHHHHHHHhhccCCCcH
Q 009799 70 -SKGYSRLGAAHLGLQ-DYIEAVNSYKKGLDIDPNNE 104 (525)
Q Consensus 70 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~ 104 (525)
.++...++.+|.... .+..|...+++++++....+
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 456777888888777 78888888999988877665
No 213
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=7.7e-06 Score=66.25 Aligned_cols=203 Identities=15% Similarity=0.166 Sum_probs=137.7
Q ss_pred cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcc
Q 009799 263 KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (525)
Q Consensus 263 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
.+.+++|.++|.++ |..|...++|..|=..|.++-+..-.... ....+..|...+.+|.+. +
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~s-khDaat~YveA~~cykk~-~-- 88 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGS-KHDAATTYVEAANCYKKV-D-- 88 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHhhcc-C--
Confidence 45788888777765 44555566677776667666554322211 111256666666666554 5
Q ss_pred cchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhc-CChhHHHHHHHHHHhcCCC
Q 009799 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ-QKYPEAIQHYTESLRRNPK 421 (525)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~ 421 (525)
..+|+.+++++++ ++..+|++..| +..+..+|.+|... .++++|+.+|+.+-+....
T Consensus 89 --~~eAv~cL~~aie------Iyt~~Grf~~a--------------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 89 --PEEAVNCLEKAIE------IYTDMGRFTMA--------------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred --hHHHHHHHHHHHH------HHHhhhHHHHH--------------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 7888888888877 44445554443 23345677887765 8899999999999876543
Q ss_pred C------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Q 009799 422 D------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS-------KGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (525)
Q Consensus 422 ~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 488 (525)
. ...+...|..-..+++|.+|+..|+++....-+++ ..++.-|.|++...+.-.+...+++..+++|
T Consensus 147 ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 147 EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 2 24566777778889999999999999887654443 2456678888888999999999999999999
Q ss_pred CCHHHH--HHHHHHHHHhh
Q 009799 489 QNQELL--DGVRRCVQQIN 505 (525)
Q Consensus 489 ~~~~~~--~~l~~~~~~~~ 505 (525)
...+.+ ..+..+...+.
T Consensus 227 ~F~dsREckflk~L~~aie 245 (288)
T KOG1586|consen 227 AFTDSRECKFLKDLLDAIE 245 (288)
T ss_pred cccccHHHHHHHHHHHHHh
Confidence 865433 34444444443
No 214
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.4e-07 Score=74.06 Aligned_cols=94 Identities=30% Similarity=0.475 Sum_probs=86.6
Q ss_pred HHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
..-|+.++...+|..|+..|.++|.++|..+..|.+.+.|++++.+++.+.....++++++|+.....+.+|.+......
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34577788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 009799 473 YDKALETYQEGLKH 486 (525)
Q Consensus 473 ~~~A~~~~~~a~~~ 486 (525)
+++|+..++++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999665
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=2.1e-05 Score=64.98 Aligned_cols=213 Identities=14% Similarity=0.117 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC-------------------HHHHHHHHHHHHHhcCHHHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED-------------------ISYLTNRAAVYLEMGKYEECIKDCD 308 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------------------~~~~~~la~~~~~~~~~~~A~~~~~ 308 (525)
+....|...-.++.+...+++|...+...-+.+..+ ......-|.+....|...+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 455566666677778888888888777766554221 1233444667777888887776665
Q ss_pred HHHHcccc------------C-hh-hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHH
Q 009799 309 KAVERGRE------------L-RS-DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKA 374 (525)
Q Consensus 309 ~~l~~~~~------------~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a 374 (525)
.....-.+ + .. ....+..+.+.+..++.-++. |.-.+..+++.++
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kE----y~iS~d~~~~vi~----------------- 205 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKE----YVLSVDAYHSVIK----------------- 205 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchh----hhhhHHHHHHHHH-----------------
Confidence 54432111 0 00 011122333333333334444 4444444444444
Q ss_pred HHHHHHHhhcC-CCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 009799 375 KKELEQQEIFD-PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN------PKDPRTYSNRAACYTKLGAMPEGLKDAD 447 (525)
Q Consensus 375 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 447 (525)
.+ |..+.....+|.+-++.|+.+.|..+|++.-+.. .....+..+.+.++...+++.+|...+.
T Consensus 206 ---------~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 206 ---------YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred ---------hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 55 6788899999999999999999999999654332 2345677888999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 448 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
+++..+|.++.+..+.|.|+...|+..+|++.++.++...|..
T Consensus 277 ~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 277 EILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999999975
No 216
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=8e-05 Score=71.65 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=113.7
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
..|..-|......|+ .+.|+.+|..+-.......+..-+|+..+|-.+.+ ...+..+.+.+|..|...|+.
T Consensus 913 ~L~~WWgqYlES~Ge----mdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGE----MDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred HHHHHHHHHHhcccc----hHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHH
Confidence 344445666666666 99999999988876666666666777777766554 345677888999999999999
Q ss_pred hHHHHHHHHHH------hcCCCC--------------HHHHHHHHHHHHHcC-CchHHHHHHHHH------H--------
Q 009799 406 PEAIQHYTESL------RRNPKD--------------PRTYSNRAACYTKLG-AMPEGLKDADKC------I-------- 450 (525)
Q Consensus 406 ~~A~~~~~~al------~~~~~~--------------~~~~~~la~~~~~~~-~~~~A~~~~~~a------l-------- 450 (525)
.+|+..|.++- .+...+ +.-....|..|...| ..+.|...|-+| +
T Consensus 984 ~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 984 VKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQ 1063 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcc
Confidence 99999887763 332221 111222334444444 455555554432 1
Q ss_pred ---------hcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHH------HHhccC----------------CC---------
Q 009799 451 ---------ELDP-TFSKGYTRKGAIQFFLKEYDKALETYQ------EGLKHD----------------PQ--------- 489 (525)
Q Consensus 451 ---------~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~------~a~~~~----------------p~--------- 489 (525)
.++| .+|..+..-+..+....+|++|+..+- .|+.+. |.
T Consensus 1064 f~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~ 1143 (1416)
T KOG3617|consen 1064 FSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQE 1143 (1416)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHH
Confidence 1234 367788888888889999999887653 444431 21
Q ss_pred CHHHHHHHHHHHHHhhhhcccC
Q 009799 490 NQELLDGVRRCVQQINKAGRGE 511 (525)
Q Consensus 490 ~~~~~~~l~~~~~~~~~~~~a~ 511 (525)
...++..++.+..+.|.+..|.
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHH
Confidence 1346667777777777665554
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.56 E-value=2.9e-07 Score=63.91 Aligned_cols=74 Identities=31% Similarity=0.495 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhc
Q 009799 281 DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (525)
Q Consensus 281 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (525)
|+-..++..+|.+|..+|++++|+.+|++++++.....+....++.++.++|.++...|+ +++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~----~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD----YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhh
Confidence 344678899999999999999999999999988544444555669999999999999999 99999999999873
No 218
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.49 E-value=3.2e-07 Score=82.51 Aligned_cols=113 Identities=28% Similarity=0.480 Sum_probs=106.3
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEY 473 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 473 (525)
..+...+..+.++.|+..|.++++++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+|+..|.+....+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44666778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 474 DKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 474 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
.+|...|++...+.|+++.+...+..|-....+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999776654
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.6e-05 Score=65.67 Aligned_cols=143 Identities=13% Similarity=0.165 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHH
Q 009799 37 VLYSNRSAAHASLHNYADALADAKKTVELK-PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (525)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (525)
.+.+.+..|+..+|+|.-.+..+.+.++.+ |..+.....+|++.++.|+.+.|..+|+++-+....-
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL------------ 245 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL------------ 245 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh------------
Confidence 456677888888999999999999999888 5577788889999999999998888888664221100
Q ss_pred HHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhc
Q 009799 116 AASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKF 195 (525)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (525)
T Consensus 246 -------------------------------------------------------------------------------- 245 (366)
T KOG2796|consen 246 -------------------------------------------------------------------------------- 245 (366)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009799 196 KGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSS 275 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 275 (525)
..-.....+..+.+.++.-.+++..|...|.+
T Consensus 246 ------------------------------------------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 246 ------------------------------------------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred ------------------------------------------------hccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 00012344556677888899999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChh
Q 009799 276 ALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (525)
Q Consensus 276 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 319 (525)
++..+|.++.+..+.|.|....|+...|++.++.++...|....
T Consensus 278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 99999999999999999999999999999999999999997543
No 220
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=5.5e-06 Score=67.50 Aligned_cols=107 Identities=22% Similarity=0.307 Sum_probs=94.3
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRR--------NPKD----------PRTYSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
..++...|+-++..|+|.+|...|+.|+.. .|.+ ...+.+++.|+...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456778899999999999999999998732 4544 3578899999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Q 009799 451 ELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (525)
Q Consensus 451 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 495 (525)
..+|.+..+++..|.++...=+..+|...|.++++++|.-..+..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 999999999999999999999999999999999999998654433
No 221
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=4.8e-05 Score=62.22 Aligned_cols=172 Identities=17% Similarity=0.175 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHh
Q 009799 289 NRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKL 368 (525)
Q Consensus 289 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (525)
.-+.+|...++|++|..++.++.+-..++. .++.-+..+-..+.+...+.. +.++..+|+++.... ...
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~k----lsEvvdl~eKAs~lY------~E~ 104 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSK----LSEVVDLYEKASELY------VEC 104 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHH------HHh
Confidence 334555555666666666666665433332 222224555555555555555 666666666655421 111
Q ss_pred chHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchHH
Q 009799 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEG 442 (525)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A 442 (525)
| .|+.+..-...+--.....++++|+++|++++.+-..+ .+.+-..++++.+...+.+|
T Consensus 105 G---------------spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 105 G---------------SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred C---------------CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 1 12222222222222344455666666666665443222 23344455666666666666
Q ss_pred HHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 443 LKDADKCIEL------DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 443 ~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
-..+.+-... .|+....+.....+|....+|..|..+|+...++
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 5555443221 1222333444444555555666666666665443
No 222
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.40 E-value=7e-07 Score=53.47 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRR 499 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 499 (525)
.++..+|.+|...|++++|++.|+++++.+|++++++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345555666666666666666666666666666655555543
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.39 E-value=5.9e-07 Score=53.78 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009799 38 LYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLG 77 (525)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (525)
+++.+|.+|..+|++++|+..|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4444555555555555555555555555555555444444
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.36 E-value=0.0018 Score=58.41 Aligned_cols=95 Identities=7% Similarity=-0.062 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCchh-----HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH-----VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAA 79 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 79 (525)
+--+|-.+-.++++.+|...|.++.+...+++ +++.++-...+-+++.+.-...+-..-+..|..+...+-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34578899999999999999999987655543 4455555555667777777777766667788888888899999
Q ss_pred HhhhhhHHHHHHHHHHhhcc
Q 009799 80 HLGLQDYIEAVNSYKKGLDI 99 (525)
Q Consensus 80 ~~~~g~~~~A~~~~~~al~~ 99 (525)
..+.+.+.+|++.+......
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhh
Confidence 99999999999988766544
No 225
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.35 E-value=2.3e-07 Score=79.37 Aligned_cols=101 Identities=29% Similarity=0.490 Sum_probs=94.9
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
|.....++...+..|++++|+..|..++.++|.....+..++.+++++++...|+..|..+++++|+....+-..|....
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 34556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCC
Q 009799 82 GLQDYIEAVNSYKKGLDIDPN 102 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~ 102 (525)
.+|++++|...+..+.+++-+
T Consensus 194 llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HhhchHHHHHHHHHHHhcccc
Confidence 999999999999999988654
No 226
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.0026 Score=57.90 Aligned_cols=418 Identities=14% Similarity=0.047 Sum_probs=231.7
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHhccC---Cch----hHHHHHHHHHHhhcc-cHHHHHHHHHHhhccCCCCH----H
Q 009799 5 AKAKGNA-AFSSGDYEAAVRHFTEAISLS---PDN----HVLYSNRSAAHASLH-NYADALADAKKTVELKPDWS----K 71 (525)
Q Consensus 5 ~~~~g~~-~~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~ 71 (525)
...+|.. ++...+++.|...++++..+. |+. ..+...++.+|.... .+..|...+++++++....+ .
T Consensus 49 ~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsck 128 (629)
T KOG2300|consen 49 HLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCK 128 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHH
Confidence 4455544 456789999999999997763 332 366778899998877 88899999999999876654 4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhcc-CCCcHH---HHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhccc
Q 009799 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDI-DPNNEA---LKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTA 147 (525)
Q Consensus 72 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
..+.++.++.-..++..|++.+.-.... +|-... ..+.+.......-+.. +...
T Consensus 129 llfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d-------~~dV--------------- 186 (629)
T KOG2300|consen 129 LLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERD-------DYDV--------------- 186 (629)
T ss_pred HHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCcc-------HHHH---------------
Confidence 5678999999999999999985433221 221111 1222222111110000 0000
Q ss_pred CCCcccccchHHHHHHHHH---HhhCCCchh------------HHhhHHHH---HHHHHHHHhhhccCCCCCCccccccc
Q 009799 148 DPTTRSYLDQDDFRNMMKD---IQRNPNNLN------------LYLKDQRV---MQALGVLLNVKFKGPTGGDDVEMQDE 209 (525)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (525)
.+....+-.. +..+|.+.+ .|+..++. ...+..+.......
T Consensus 187 ---------~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti------------ 245 (629)
T KOG2300|consen 187 ---------EKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI------------ 245 (629)
T ss_pred ---------HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc------------
Confidence 0001111111 111111111 01111111 11111111111000
Q ss_pred cCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcC------CCC
Q 009799 210 DAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD------DED 283 (525)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------p~~ 283 (525)
. +....+..+ .-..+.+..+ ..+......+.++..--.--...|-+++|.++-++++... |..
T Consensus 246 --s--t~~~~h~e~---ilgsps~~l~----~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~ 314 (629)
T KOG2300|consen 246 --S--TSSRGHDEK---ILGSPSPILF----EWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLM 314 (629)
T ss_pred --C--CCCCCcccc---ccCCCChHHH----hhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccch
Confidence 0 000000000 0000111110 0011111122222222222234566777777777776542 211
Q ss_pred H--------HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChh---hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 009799 284 I--------SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS---DFKMIARALTRKGTALVKMAKCSKDYEPAIETF 352 (525)
Q Consensus 284 ~--------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 352 (525)
. ..+-.++.|-.-.|++.+|++....+.+.....+. ....-+.++..+|......+. ++.|...|
T Consensus 315 srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~----~enAe~hf 390 (629)
T KOG2300|consen 315 SRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNC----YENAEFHF 390 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcch----HHHHHHHH
Confidence 1 23455667777899999999988887765433222 223336778888888888888 99999999
Q ss_pred HHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC----------
Q 009799 353 QKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---------- 422 (525)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------- 422 (525)
..+.+.....+ -.+.+..++|.+|.+.|+-+.-.+.++. +.|.+
T Consensus 391 ~~a~k~t~~~d-----------------------l~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 391 IEATKLTESID-----------------------LQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHHhhhHHH-----------------------HHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHH
Confidence 99988433211 1234556789999998876554444443 34432
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC---CCCHH-
Q 009799 423 PRTYSNRAACYTKLGAMPEGLKDADKCIELDPT------FSKGYTRKGAIQFFLKEYDKALETYQEGLKHD---PQNQE- 492 (525)
Q Consensus 423 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~- 492 (525)
..+++..|...+.++++.+|...+.+.+++... ..-.+..+|.+....|+..++.....-++++. |+.+.
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 356777888888999999999999999887521 12356678888999999999999888887764 44432
Q ss_pred --HHHHHHHHHHHhhh
Q 009799 493 --LLDGVRRCVQQINK 506 (525)
Q Consensus 493 --~~~~l~~~~~~~~~ 506 (525)
....+..++...|.
T Consensus 525 Lws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 525 LWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 22334455555554
No 227
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.28 E-value=0.0038 Score=58.67 Aligned_cols=408 Identities=9% Similarity=-0.026 Sum_probs=219.3
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHH-hhhhhHHHHHHHHHHhh
Q 009799 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH-LGLQDYIEAVNSYKKGL 97 (525)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al 97 (525)
+.+...|...+...|.....|...|..-.++|..+.+++.|++++.--|.....|..+-... ...|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 55667788888889998899999999999999999999999999999998888777654333 34567777777888887
Q ss_pred ccCCCcH---HHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCch
Q 009799 98 DIDPNNE---ALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNL 174 (525)
Q Consensus 98 ~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (525)
.....+- ..|..+.......++. ..+. .....+.. .....-+.-+..+.+.++..+...
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~------------k~v~---~iyeRile---iP~~~~~~~f~~f~~~l~~~~~~~ 203 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSW------------KRVA---NIYERILE---IPLHQLNRHFDRFKQLLNQNEEKI 203 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccH------------HHHH---HHHHHHHh---hhhhHhHHHHHHHHHHHhcCChhh
Confidence 6654432 2232222222111111 0000 00000000 000111223333444444333221
Q ss_pred hHHhh-HHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHH
Q 009799 175 NLYLK-DQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKE 253 (525)
Q Consensus 175 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (525)
..-.. ..+.......- .....+....+..+..+.... ........ ... ......
T Consensus 204 l~~~d~~~~l~~~~~~~-~~~~~~~~~~e~~~~~v~~~~--------------~~s~~l~~----~~~------~l~~~~ 258 (577)
T KOG1258|consen 204 LLSIDELIQLRSDVAER-SKITHSQEPLEELEIGVKDST--------------DPSKSLTE----EKT------ILKRIV 258 (577)
T ss_pred hcCHHHHHHHhhhHHhh-hhcccccChhHHHHHHHhhcc--------------CccchhhH----HHH------HHHHHH
Confidence 11100 00000000000 000000000000000000000 00000000 000 111111
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhhc-----CC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 254 KEAGNAAYKKKEFEKAIEHYSSALEL-----DD---EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
...-.++.......+.+..++..++. .| .+...|......-...|+++...-.|++++--.....
T Consensus 259 ~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~------- 331 (577)
T KOG1258|consen 259 SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD------- 331 (577)
T ss_pred HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-------
Confidence 11222344445556666677766653 22 3346777778888889999999999999987554443
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
..|.+........|+ .+-|...+..+.+. ..|..+.....-+...-..|++
T Consensus 332 efWiky~~~m~~~~~----~~~~~~~~~~~~~i-------------------------~~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 332 EFWIKYARWMESSGD----VSLANNVLARACKI-------------------------HVKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred HHHHHHHHHHHHcCc----hhHHHHHHHhhhhh-------------------------cCCCCcHHHHHHHHHHHhhccH
Confidence 444444444444444 66666666666654 4566677777777777778888
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHH---HHHHHHhcC--CC-CHHHHHHHHHHH-HHhcCHHHHHH
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK---DADKCIELD--PT-FSKGYTRKGAIQ-FFLKEYDKALE 478 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~---~~~~al~~~--p~-~~~~~~~la~~~-~~~g~~~~A~~ 478 (525)
..|...+++..+..|+...+-........++|+.+.+.. .+.....-. +. ....+...+... .-.++.+.|..
T Consensus 383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 383 DDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888888877777777666666667777777777763 332222211 11 123444445443 34677788888
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009799 479 TYQEGLKHDPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 479 ~~~~a~~~~p~~~~~~~~l~~~~~~~~ 505 (525)
.+.+++...|.+...+..+........
T Consensus 463 ~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 463 ILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 888888888888777766666554433
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.27 E-value=0.00049 Score=62.94 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-cccChhhHHHHHH
Q 009799 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE--DISYLTNRAAVYLEMGKYEECIKDCDKAVER-GRELRSDFKMIAR 326 (525)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~~~~ 326 (525)
..+...+|.+..+.|+.++|++.+..+++..|. +..++.++..+++..+.|.++...+.+.-++ -|++ +.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS-------At 331 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS-------AT 331 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch-------HH
Confidence 344567899999999999999999999998775 5678999999999999999999999885432 1232 22
Q ss_pred HHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhc---hHHHHHHHHHHHhhcCCCcHHHHHHhh------h
Q 009799 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLN---EAEKAKKELEQQEIFDPKIADEEREKG------N 397 (525)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~------~ 397 (525)
+. |..|+-.++..-+.. .++...+.| .-..|.+.+.++++.+|..+..+..+= .
T Consensus 332 i~----------------YTaALLkaRav~d~f-s~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPe 394 (539)
T PF04184_consen 332 IC----------------YTAALLKARAVGDKF-SPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPE 394 (539)
T ss_pred HH----------------HHHHHHHHHhhcccc-CchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChH
Confidence 22 222222221111110 111111111 112355666666667777766554331 1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 398 EFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACY 433 (525)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 433 (525)
-..+.|+ .+|+.+---.+..-.....++..+-..+
T Consensus 395 hilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~tw 429 (539)
T PF04184_consen 395 HILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTW 429 (539)
T ss_pred HhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHh
Confidence 2345554 7777766666555444444544444433
No 229
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.25 E-value=1.1e-06 Score=48.75 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=19.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q 009799 446 ADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (525)
Q Consensus 446 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 477 (525)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.24 E-value=7.1e-05 Score=66.31 Aligned_cols=112 Identities=11% Similarity=0.035 Sum_probs=92.6
Q ss_pred cCCCcHHHHHHhhhHHHh-cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH---HH
Q 009799 384 FDPKIADEEREKGNEFFK-QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS---KG 459 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~ 459 (525)
..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+...|+.+.|...|++++..-|... .+
T Consensus 30 ~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~i 109 (280)
T PF05843_consen 30 DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKI 109 (280)
T ss_dssp CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHH
Confidence 666678899999999666 56677799999999999999999999999999999999999999999998876654 57
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Q 009799 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (525)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 495 (525)
|......-...|+.+......+++.+..|++.....
T Consensus 110 w~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 110 WKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 778888888899999999999999999998665544
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.23 E-value=0.00016 Score=66.03 Aligned_cols=191 Identities=14% Similarity=0.059 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh----H
Q 009799 289 NRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD----T 364 (525)
Q Consensus 289 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 364 (525)
.+..-..+..++..-++.-.++++++|+. +.+|..++.-... ...++..+|+++++.....- .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdC-------AdAYILLAEEeA~------Ti~Eae~l~rqAvkAgE~~lg~s~~ 239 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDC-------ADAYILLAEEEAS------TIVEAEELLRQAVKAGEASLGKSQF 239 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhh-------hHHHhhccccccc------CHHHHHHHHHHHHHHHHHhhchhhh
Confidence 34444456667777777777777777776 4455544431111 14566666666665322110 0
Q ss_pred HHHhchHHHHHHHHHHHhhcCCC--cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCch
Q 009799 365 LKKLNEAEKAKKELEQQEIFDPK--IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK--DPRTYSNRAACYTKLGAMP 440 (525)
Q Consensus 365 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~ 440 (525)
....|..-+ .....+. ...+...+|.+..+.|+.++|++.++..++..|. +..++.++..++..++.|.
T Consensus 240 ~~~~g~~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 240 LQHHGHFWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhcccchhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 000010000 0001111 2345567999999999999999999999988775 4678999999999999999
Q ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHHHH-hcC---------------HHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009799 441 EGLKDADKCIEL-DPTFSKGYTRKGAIQFF-LKE---------------YDKALETYQEGLKHDPQNQELLDGVRR 499 (525)
Q Consensus 441 ~A~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~a~~~~p~~~~~~~~l~~ 499 (525)
++...+.+.-++ -|..+...+..+.+..+ .++ -..|++.+.+|++.||.-+..+..+..
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~ 388 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS 388 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence 999999986544 36666666666655433 222 235788999999999988776655443
No 232
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.21 E-value=9.2e-07 Score=49.06 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=16.1
Q ss_pred HHHHhccCCchhHHHHHHHHHHhhcccHHHHH
Q 009799 25 FTEAISLSPDNHVLYSNRSAAHASLHNYADAL 56 (525)
Q Consensus 25 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 56 (525)
|+++|+.+|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44455555555555555555555555555443
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.20 E-value=0.0021 Score=61.44 Aligned_cols=116 Identities=16% Similarity=0.013 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCchHHHHHH
Q 009799 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK----DPRTYSNRAACYTKLGAMPEGLKDA 446 (525)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~ 446 (525)
...|.+.+.......|+..-..+..|.++...|+.++|++.|++++..... ..-.++.+|+++..+.+|++|..++
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 344444445555588999999999999999999999999999998854332 2356789999999999999999999
Q ss_pred HHHHhcCCCC-HHHHHHHHHHHHHhcCH-------HHHHHHHHHHhcc
Q 009799 447 DKCIELDPTF-SKGYTRKGAIQFFLKEY-------DKALETYQEGLKH 486 (525)
Q Consensus 447 ~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~ 486 (525)
.+..+.+.-. ....+..|.++...|+. ++|.++|.++-.+
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999876553 34556778889999999 8888888887554
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0015 Score=53.83 Aligned_cols=128 Identities=18% Similarity=0.147 Sum_probs=78.9
Q ss_pred HHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHH
Q 009799 294 YLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEK 373 (525)
Q Consensus 294 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (525)
.....++++|+.+|++++.+-....... .-...+...+.++....+ +++|...+.+-.....
T Consensus 120 ~lenv~Pd~AlqlYqralavve~~dr~~-ma~el~gk~sr~lVrl~k----f~Eaa~a~lKe~~~~~------------- 181 (308)
T KOG1585|consen 120 ALENVKPDDALQLYQRALAVVEEDDRDQ-MAFELYGKCSRVLVRLEK----FTEAATAFLKEGVAAD------------- 181 (308)
T ss_pred HhhcCCHHHHHHHHHHHHHHHhccchHH-HHHHHHHHhhhHhhhhHH----hhHHHHHHHHhhhHHH-------------
Confidence 4456678888888888887655443332 224556666777777777 8887777665543111
Q ss_pred HHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 009799 374 AKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR----NPKDPRTYSNRAACYTKLGAMPEGLKDAD 447 (525)
Q Consensus 374 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 447 (525)
.....+.....+.....++....+|..|..+++...++ .|++..+..+|-..| ..|+.++....+.
T Consensus 182 -------~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 182 -------KCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred -------HHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 11123344455666666777778899999998887655 234455555555444 4566666665553
No 235
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.16 E-value=0.0015 Score=64.06 Aligned_cols=105 Identities=19% Similarity=0.051 Sum_probs=69.6
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHhcc-----CCchhHHHHHHHHHHhhcc-----cHHHHHHHHHHhhccCCCC
Q 009799 5 AKAKGNAAFSS-----GDYEAAVRHFTEAISL-----SPDNHVLYSNRSAAHASLH-----NYADALADAKKTVELKPDW 69 (525)
Q Consensus 5 ~~~~g~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~ 69 (525)
....|.+++.- .|.+.|+.+|+.+... .-..+.+.+.+|.+|.+.. +...|+.+|.++.... +
T Consensus 247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~ 324 (552)
T KOG1550|consen 247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--N 324 (552)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--C
Confidence 34555555544 5788888888888661 1114567788888887743 6777888888887665 4
Q ss_pred HHHHHHHHHHHhhhh---hHHHHHHHHHHhhccCCCcHHHHhhHHhH
Q 009799 70 SKGYSRLGAAHLGLQ---DYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (525)
Q Consensus 70 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (525)
+.+.+.+|.++..-. ++..|..+|..|... .+..+...++.+
T Consensus 325 ~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~ 369 (552)
T KOG1550|consen 325 PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALC 369 (552)
T ss_pred chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHH
Confidence 567788888887655 567888888877653 333444444443
No 236
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.15 E-value=3.7e-06 Score=47.11 Aligned_cols=32 Identities=41% Similarity=0.701 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 489 (525)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 237
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.1e-05 Score=66.37 Aligned_cols=107 Identities=33% Similarity=0.581 Sum_probs=93.8
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD----PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (525)
.+.-+-.-|+-|++.++|..|+..|.++|+....+ ..+|.+.|-+....|+|..|+..+.+++.++|.+..+++.=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 34566678999999999999999999999876544 56789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhccCCCCHHHH
Q 009799 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 494 (525)
|.|++.+.++.+|..+.+..+.++-+...+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999988877765544433
No 238
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.13 E-value=0.0082 Score=56.57 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHH
Q 009799 52 YADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (525)
Q Consensus 52 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (525)
.+.+...|...+...|.....|-..|..-.++|..+.+...|++++.--|-..+.|..+....
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFL 123 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 466677788888889999999999999999999999999999999999998888887665443
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.11 E-value=6.8e-06 Score=46.09 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
.+++.+|.++..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777777664
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=6.2e-06 Score=46.21 Aligned_cols=32 Identities=41% Similarity=0.672 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCc
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD 34 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 34 (525)
+.|+.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
No 241
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.01 E-value=5.2e-06 Score=71.35 Aligned_cols=93 Identities=26% Similarity=0.431 Sum_probs=84.3
Q ss_pred hHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH
Q 009799 397 NEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKA 476 (525)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 476 (525)
.-.+..|.+++|++.|..++.++|....++...+.++.++++...|+..+..+++++|+....|-..|.....+|++++|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 33456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCC
Q 009799 477 LETYQEGLKHDPQ 489 (525)
Q Consensus 477 ~~~~~~a~~~~p~ 489 (525)
..++..+.+++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999888644
No 242
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.01 E-value=0.0034 Score=61.62 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHhccCCchhHHHHHHHHHHhhc-----ccHHHHHHHHHHhhcc-----CCCCHHHHHHHHHHHhhhh--
Q 009799 17 DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASL-----HNYADALADAKKTVEL-----KPDWSKGYSRLGAAHLGLQ-- 84 (525)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 84 (525)
....|..+|+.+... .+..+...+|.|+..- .+.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356778888877655 3567777888887654 5788888888888661 1114567778888887743
Q ss_pred ---hHHHHHHHHHHhhccC
Q 009799 85 ---DYIEAVNSYKKGLDID 100 (525)
Q Consensus 85 ---~~~~A~~~~~~al~~~ 100 (525)
++..|+..|.++-...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG 323 (552)
T ss_pred ccccHHHHHHHHHHHHhcC
Confidence 6677888888776654
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00068 Score=58.49 Aligned_cols=164 Identities=11% Similarity=0.051 Sum_probs=121.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-cccChhhHHHHHHHHHHh
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER-GRELRSDFKMIARALTRK 331 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 331 (525)
...-+.+....|++.+|...+++.++..|.+.-++..--.+++.+|+...-...+++++.. +++.+-. ..+.-..
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~----sYv~Gmy 181 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY----SYVHGMY 181 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH----HHHHHHH
Confidence 3344566778899999999999999999999888888888889999999999999998876 5554321 2333344
Q ss_pred hhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHH
Q 009799 332 GTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQH 411 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 411 (525)
+..+...|- |++|.+.-+++++ ++|.+..+...++.++...|++.++.+.
T Consensus 182 aFgL~E~g~----y~dAEk~A~ralq--------------------------iN~~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 182 AFGLEECGI----YDDAEKQADRALQ--------------------------INRFDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred HhhHHHhcc----chhHHHHHHhhcc--------------------------CCCcchHHHHHHHHHHHhcchhhhHHHH
Confidence 555566666 8888888888888 7888888888888888888888888887
Q ss_pred HHHHHhcCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 412 YTESLRRNPKD----PRTYSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 412 ~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
..+.-..-... ..-|..-|.++...+.|+.|++.|.+-+
T Consensus 232 M~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 232 MYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 76643322111 2345567777888888888888887644
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.98 E-value=1.1e-05 Score=45.16 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHhhccCCC
Q 009799 38 LYSNRSAAHASLHNYADALADAKKTVELKPD 68 (525)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 68 (525)
+++.+|.+++.+|++++|+..|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444555555555555555555555555444
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.00062 Score=58.71 Aligned_cols=162 Identities=19% Similarity=0.127 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHH
Q 009799 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLK 366 (525)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 366 (525)
...-+.+....|++.+|....++.++-.|.+.-.+...-.+++..|. .......+++.+..
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~-----------~~~~k~ai~kIip~-------- 166 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN-----------QIGKKNAIEKIIPK-------- 166 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc-----------hhhhhhHHHHhccc--------
Confidence 33445566778999999999999999999886555555555665554 66666666666652
Q ss_pred HhchHHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHH
Q 009799 367 KLNEAEKAKKELEQQEIFDPKI---ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGL 443 (525)
Q Consensus 367 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 443 (525)
-+|+. ..+.-.++..+...|-|++|.+.-+++++++|.+..+...++.++...|++.++.
T Consensus 167 -----------------wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 167 -----------------WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred -----------------cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence 14443 5556677888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 009799 444 KDADKCIELDPT----FSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (525)
Q Consensus 444 ~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (525)
+...+.-..-.. -..-|..-+.++..-+.|+.|++.|.+-+
T Consensus 230 eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 230 EFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 998775433211 12245667888888899999999998754
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.97 E-value=0.014 Score=54.40 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=86.9
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (525)
+..+...+.+..+.|. ++.|...+.++....+. ..+..+.+.+..+.++...|+
T Consensus 146 ~~~~l~~a~~aRk~g~----~~~A~~~l~~~~~~~~~----------------------~~~~~~~v~~e~akllw~~g~ 199 (352)
T PF02259_consen 146 AETWLKFAKLARKAGN----FQLALSALNRLFQLNPS----------------------SESLLPRVFLEYAKLLWAQGE 199 (352)
T ss_pred HHHHHHHHHHHHHCCC----cHHHHHHHHHHhccCCc----------------------ccCCCcchHHHHHHHHHHcCC
Confidence 5556666666666666 77776666666653322 111245555566666666666
Q ss_pred hhHHHHHHHHHHhcC-C---------------------------------CCHHHHHHHHHHHHHc------CCchHHHH
Q 009799 405 YPEAIQHYTESLRRN-P---------------------------------KDPRTYSNRAACYTKL------GAMPEGLK 444 (525)
Q Consensus 405 ~~~A~~~~~~al~~~-~---------------------------------~~~~~~~~la~~~~~~------~~~~~A~~ 444 (525)
..+|+..++..+... . ....++..+|.-.... +..+++..
T Consensus 200 ~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~ 279 (352)
T PF02259_consen 200 QEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILK 279 (352)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 666666666555410 0 0124555666666666 77788888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcC-----------------HHHHHHHHHHHhccCCC
Q 009799 445 DADKCIELDPTFSKGYTRKGAIQFFLKE-----------------YDKALETYQEGLKHDPQ 489 (525)
Q Consensus 445 ~~~~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~a~~~~p~ 489 (525)
.|..+++.+|+...+|+..|..+...=+ ...|+..|-+++...|+
T Consensus 280 ~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 280 YYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8888888888888888888877655411 13477777777777776
No 247
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.96 E-value=0.005 Score=59.14 Aligned_cols=215 Identities=15% Similarity=0.149 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhh
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKG 332 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 332 (525)
|-.++.-|...|+|+.|...|.++- ....-...|.+.|+|..|.+.-.++.. |+.. ...|...+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t------~~~yiaka 831 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEAT------ISLYIAKA 831 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhH------HHHHHHhH
Confidence 4456777888889999988887742 222334567778888888877776643 2221 34455555
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCc-HHHHHHhhhHHHhcCChhHHHHH
Q 009799 333 TALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI-ADEEREKGNEFFKQQKYPEAIQH 411 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 411 (525)
.-....|+ |.+|..+|-..-.-+..-.++.+.|..+..+....+ .+|+. .+....+|.-+...|+...|...
T Consensus 832 edldehgk----f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 832 EDLDEHGK----FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred HhHHhhcc----hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 55555555 666655543221111111122233333333322222 22221 23444555555555555555554
Q ss_pred HHHHHhc------CC-----------------CCHH--HHHH---------HHHHHHHcCCchHHHHHH------HHHHh
Q 009799 412 YTESLRR------NP-----------------KDPR--TYSN---------RAACYTKLGAMPEGLKDA------DKCIE 451 (525)
Q Consensus 412 ~~~al~~------~~-----------------~~~~--~~~~---------la~~~~~~~~~~~A~~~~------~~al~ 451 (525)
|-++-.. .. .+.. +.+. --.++.+.|-.+.|+... +-++.
T Consensus 905 flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afd 984 (1636)
T KOG3616|consen 905 FLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFD 984 (1636)
T ss_pred HHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHH
Confidence 4333211 00 0110 0000 011222333333333321 11111
Q ss_pred -----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 452 -----LDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 452 -----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
.....+.++..++..+...|++++|-+.|-.+++++.-|
T Consensus 985 lari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 985 LARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 122345677888888888999999999999999887554
No 248
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.007 Score=60.35 Aligned_cols=50 Identities=24% Similarity=0.467 Sum_probs=39.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 009799 254 KEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAV 311 (525)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 311 (525)
-..|.-++..+.|+.|.-+|.. ..-|..++..+..+|+|..|...-+++-
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3468888888999888887765 3456788888889999999988887764
No 249
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=0.0014 Score=52.20 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcH---HHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC
Q 009799 345 YEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIA---DEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421 (525)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 421 (525)
..+|...|.++++.... +.+ +......+....+|... -.-..++..+...|++++|+..++.++....+
T Consensus 50 ~~~AS~~Y~~~i~~~~a-------k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D 121 (207)
T COG2976 50 AQEASAQYQNAIKAVQA-------KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD 121 (207)
T ss_pred HHHHHHHHHHHHHHHhc-------CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh
Confidence 44677777777663221 111 22233333333444433 33457888999999999999999999976554
Q ss_pred C---HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 422 D---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 422 ~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
. +.+-.++|++...+|.+++|+..+......+ -.+..-...|.++...|+.++|+..|+++++.+++.
T Consensus 122 e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 122 ENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3 3456789999999999999999887654321 123446778999999999999999999999998554
No 250
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.93 E-value=0.0095 Score=57.31 Aligned_cols=167 Identities=17% Similarity=0.183 Sum_probs=98.2
Q ss_pred hhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHH
Q 009799 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQ 410 (525)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 410 (525)
-|.-+...++ ++.|+..|-.+-......+......++.+|+..++..-... .....|-.++.-|...|+|+.|.+
T Consensus 712 wg~hl~~~~q----~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 712 WGDHLEQIGQ----LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HhHHHHHHHh----HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHH
Confidence 3555666666 89998888766554433445555677778877776543322 223445677888889999999998
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHH-------------
Q 009799 411 HYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF-SKGYTRKGAIQFFLKEYDKA------------- 476 (525)
Q Consensus 411 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A------------- 476 (525)
.|.++- ....--..|-+.|+|+.|.+.-++... |.. ...|...+.-+-..|++.+|
T Consensus 787 lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a 856 (1636)
T KOG3616|consen 787 LFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA 856 (1636)
T ss_pred HHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH
Confidence 887642 222334556778888888777666543 322 33444455555555555444
Q ss_pred HHHHHHHh----------ccCCCC-HHHHHHHHHHHHHhhhhcccCC
Q 009799 477 LETYQEGL----------KHDPQN-QELLDGVRRCVQQINKAGRGEL 512 (525)
Q Consensus 477 ~~~~~~a~----------~~~p~~-~~~~~~l~~~~~~~~~~~~a~~ 512 (525)
++.|++.- +..|++ .+.+..++.-+..-|+...++.
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHH
Confidence 44444321 112333 3455566666666666555543
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.93 E-value=0.00022 Score=56.49 Aligned_cols=95 Identities=22% Similarity=0.216 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCch----------------------hHHHHHHHHHHhhcccHHHHHHHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN----------------------HVLYSNRSAAHASLHNYADALADAKK 61 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 61 (525)
.+...|......|+...++..+++++.+.... ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 45566778888999999999999999873221 14556778888999999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 009799 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (525)
Q Consensus 62 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 98 (525)
++..+|.+..++..+..+|...|+..+|+..|++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998754
No 252
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.90 E-value=0.0051 Score=55.64 Aligned_cols=80 Identities=10% Similarity=-0.042 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHc-cccChhh
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALEL----DDEDISYLTNRAAVYLE---MGKYEECIKDCDKAVER-GRELRSD 320 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~-~~~~~~~ 320 (525)
.+++...+=..|....+|+.-+...+.+-.. -++.+.+.+.+|.++.+ .|+.++|+..+..++.. .+.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--- 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--- 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---
Confidence 4556667777888999999999999887766 45677888999999999 99999999999995543 4444
Q ss_pred HHHHHHHHHHhhhhH
Q 009799 321 FKMIARALTRKGTAL 335 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~ 335 (525)
++++...|.+|
T Consensus 217 ----~d~~gL~GRIy 227 (374)
T PF13281_consen 217 ----PDTLGLLGRIY 227 (374)
T ss_pred ----hHHHHHHHHHH
Confidence 45555555544
No 253
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.89 E-value=0.021 Score=53.15 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDD----EDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
......+...+.+....|+++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46778899999999999999999999999987652 2577888899999999999999999999988
No 254
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.02 Score=52.68 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=85.5
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh-HHHHHHHHHHhhc
Q 009799 20 AAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD-YIEAVNSYKKGLD 98 (525)
Q Consensus 20 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 98 (525)
.-...|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|...+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 446689999999999999999999998899989999999999999999999999999998888876 9999999999999
Q ss_pred cCCCcHHHHhhHHhHH
Q 009799 99 IDPNNEALKSGLADAK 114 (525)
Q Consensus 99 ~~p~~~~~~~~l~~~~ 114 (525)
.+|+++..|....++.
T Consensus 169 ~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRME 184 (568)
T ss_pred cCCCChHHHHHHHHHH
Confidence 9999999887665544
No 255
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.87 E-value=0.014 Score=52.85 Aligned_cols=177 Identities=17% Similarity=0.123 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc----cccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhc
Q 009799 283 DISYLTNRAAVYLEMGKYEECIKDCDKAVER----GRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (525)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (525)
++++...+-.+|....+|+.-+...+..-.+ .++. ..+-+..+.++.+.++ .|+.++|+..+..++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~-------~~i~~~yafALnRrn~-~gdre~Al~il~~~l~~ 211 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ-------HNIKFQYAFALNRRNK-PGDREKALQILLPVLES 211 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc-------hHHHHHHHHHHhhccc-CCCHHHHHHHHHHHHhc
Confidence 4566778888899999999999999887665 2222 2333333443333111 33488888888885543
Q ss_pred CCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh---------cCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 359 HRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK---------QQKYPEAIQHYTESLRRNPKDPRTYSNR 429 (525)
Q Consensus 359 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~l 429 (525)
..+.+++.+..+|.+|-. ....++|+..|.++.+.+|+ ...-.|+
T Consensus 212 -------------------------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~ 265 (374)
T PF13281_consen 212 -------------------------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINA 265 (374)
T ss_pred -------------------------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHH
Confidence 455667777777777642 22478999999999999964 4444567
Q ss_pred HHHHHHcCCchHHHHHHHHHH--------hc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH
Q 009799 430 AACYTKLGAMPEGLKDADKCI--------EL----DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQEL 493 (525)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al--------~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 493 (525)
+.++...|...+...-+.+.. +. .-.+.+.+-.++.+....|++++|.+++++++.+.|..-+.
T Consensus 266 AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 266 ATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred HHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 777777776444333222222 11 22345666778888899999999999999999998876443
No 256
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.87 E-value=0.0013 Score=58.33 Aligned_cols=139 Identities=9% Similarity=-0.059 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHccccChhhHHHHHHHHHH
Q 009799 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE-MGKYEECIKDCDKAVERGRELRSDFKMIARALTR 330 (525)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 330 (525)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...+ ..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~-------~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFW-------LE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHH-------HH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHH-------HH
Confidence 566677777778889999999999997767778899999999777 5666669999999999999885444 33
Q ss_pred hhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHH
Q 009799 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQ 410 (525)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 410 (525)
....+...++ .+.+..+|++++...+... ....+|......-...|+.+....
T Consensus 76 Y~~~l~~~~d----~~~aR~lfer~i~~l~~~~-----------------------~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 76 YLDFLIKLND----INNARALFERAISSLPKEK-----------------------QSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHCCTSSCHH-----------------------HCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HHHHHHHhCc----HHHHHHHHHHHHHhcCchh-----------------------HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344444555 8899999999988432211 023566666677777788888888
Q ss_pred HHHHHHhcCCCCHH
Q 009799 411 HYTESLRRNPKDPR 424 (525)
Q Consensus 411 ~~~~al~~~~~~~~ 424 (525)
+.+++.+..|++..
T Consensus 129 v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 129 VEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHHTTTS-H
T ss_pred HHHHHHHHhhhhhH
Confidence 88888888776443
No 257
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.82 E-value=0.045 Score=54.83 Aligned_cols=84 Identities=10% Similarity=0.039 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhc-cCCc---hhHHHHHHHHHHh-hcccHHHHHHHHHHhhccC--CCCH----HHHHHHHHHHhhhhhH
Q 009799 18 YEAAVRHFTEAIS-LSPD---NHVLYSNRSAAHA-SLHNYADALADAKKTVELK--PDWS----KGYSRLGAAHLGLQDY 86 (525)
Q Consensus 18 ~~~A~~~~~~al~-~~p~---~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~--p~~~----~~~~~la~~~~~~g~~ 86 (525)
...|+.+++-+++ ..+. .+.+.+.+|.+++ ...+++.|..++++++.+. ++.. .+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 5678999999884 3322 5699999999998 7899999999999998776 3332 3456778888888877
Q ss_pred HHHHHHHHHhhccCCC
Q 009799 87 IEAVNSYKKGLDIDPN 102 (525)
Q Consensus 87 ~~A~~~~~~al~~~p~ 102 (525)
. |....++.++...+
T Consensus 117 ~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSET 131 (608)
T ss_pred H-HHHHHHHHHHHHhc
Confidence 7 99999998876544
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.034 Score=53.40 Aligned_cols=143 Identities=16% Similarity=0.158 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
..-.++.++|..+.....|++|.++|...-. .-+...++++..+|++- +.....-|++.+....+++.
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHH
Confidence 4567888999999999999999999987532 23566778888777764 33444456665555555666
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (525)
+...|. -++|++.|-+.-.-.........++++.+|.+..++. .-|.........+.-+...++.-+
T Consensus 862 f~svGM-----------C~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~e 928 (1189)
T KOG2041|consen 862 FTSVGM-----------CDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHME 928 (1189)
T ss_pred HHhhch-----------HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHH
Confidence 655555 7778777765443222334566778888887766542 122222333334444556677777
Q ss_pred HHHHHHHH
Q 009799 408 AIQHYTES 415 (525)
Q Consensus 408 A~~~~~~a 415 (525)
|++..+++
T Consensus 929 aIe~~Rka 936 (1189)
T KOG2041|consen 929 AIEKDRKA 936 (1189)
T ss_pred HHHHhhhc
Confidence 77777665
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00087 Score=57.17 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHh---------------------
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKT--------------------- 62 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------------- 62 (525)
.-+..|...+..|++.+|...|..++...|.+..+...++.|+...|+.+.|...+...
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999998877665531
Q ss_pred -------------hccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCC--CcHHHHhhHHhHHHHHhh
Q 009799 63 -------------VELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDP--NNEALKSGLADAKAAASA 119 (525)
Q Consensus 63 -------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~ 119 (525)
+..+|++.++.+.+|..+...|+.+.|.+.+-..++.+- .+..+...+..++...|.
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 223688888888999999999999999888888887653 345566666666666543
No 260
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.77 E-value=0.029 Score=50.98 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=75.4
Q ss_pred HHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCc
Q 009799 24 HFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (525)
Q Consensus 24 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 103 (525)
-++.-++-+|++...|+.+...+..+|.+++-.+.+++...-.|-.+.+|...-..-...++|......|-+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 4566678899999999999999999999999999999999999998888888777777788999999999998875433
Q ss_pred HHHHhhHHhHHHHH
Q 009799 104 EALKSGLADAKAAA 117 (525)
Q Consensus 104 ~~~~~~l~~~~~~~ 117 (525)
.+.|.......++.
T Consensus 109 ldLW~lYl~YIRr~ 122 (660)
T COG5107 109 LDLWMLYLEYIRRV 122 (660)
T ss_pred HhHHHHHHHHHHhh
Confidence 55555544443333
No 261
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.11 Score=57.40 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHH
Q 009799 299 KYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKEL 378 (525)
Q Consensus 299 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 378 (525)
+..+-+-.+++++-..-.++.....++++|...+.+....|+ ++.|....-++.+
T Consensus 1644 ~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~----~q~A~nall~A~e--------------------- 1698 (2382)
T KOG0890|consen 1644 RIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH----LQRAQNALLNAKE--------------------- 1698 (2382)
T ss_pred HHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc----HHHHHHHHHhhhh---------------------
Confidence 345555555555433222223344458999999999888888 9999888888876
Q ss_pred HHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC--------H---------HHHHHHHHHHHHcCCc--
Q 009799 379 EQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD--------P---------RTYSNRAACYTKLGAM-- 439 (525)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------~---------~~~~~la~~~~~~~~~-- 439 (525)
. .-+.++...|..+...|+-..|+..+++.++.+-.+ | .+...++.-....+++
T Consensus 1699 -----~--r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1699 -----S--RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred -----c--ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence 2 257788899999999999999999999999653221 1 1233344444445553
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------hcCHHH---HHHHHHHHhccCCCC
Q 009799 440 PEGLKDADKCIELDPTFSKGYTRKGAIQFF------------LKEYDK---ALETYQEGLKHDPQN 490 (525)
Q Consensus 440 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g~~~~---A~~~~~~a~~~~p~~ 490 (525)
+.-+++|..+.++.|.....++.+|..|.+ .|++.. ++..|.+++.....+
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQH 1837 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchh
Confidence 456788999999999877778888755433 244444 555556666554443
No 262
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.71 E-value=0.00095 Score=52.88 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=68.5
Q ss_pred hhHHHhcCChhHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 009799 396 GNEFFKQQKYPEAIQHYTESLRRNPKD----------------------PRTYSNRAACYTKLGAMPEGLKDADKCIELD 453 (525)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~al~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 453 (525)
|......++.+.++..+++++.+.... ..+...++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 444555667777777777777654221 1345667888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 454 PTFSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 454 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
|.+..++..+..+|...|+..+|+..|++...
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988854
No 263
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.71 E-value=5.9e-05 Score=42.16 Aligned_cols=32 Identities=31% Similarity=0.581 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 489 (525)
.+|+.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666666666666666666666664
No 264
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=0.011 Score=47.31 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=28.6
Q ss_pred HHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC
Q 009799 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD 453 (525)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 453 (525)
..++.+...+|.+++|+..+...-... -.+......|.++...|+-++|...|++++..+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 345555555555555555544321110 012233445555555555555555555555554
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0085 Score=51.38 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (525)
....-+..+.-....|++.+|...|..++...|.+..+...++.+|...|+.+.|...+... |...... .+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~-----~~ 203 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDK-----AA 203 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhh-----HH
Confidence 34445566778889999999999999999999999999999999999999999998887663 3221111 00
Q ss_pred HHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHH
Q 009799 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEA 408 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 408 (525)
.. ....++.+.++-...+. ..+.+.+..+|++..+-+.+|..+...|+.+.|
T Consensus 204 ~~--------------l~a~i~ll~qaa~~~~~--------------~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A 255 (304)
T COG3118 204 HG--------------LQAQIELLEQAAATPEI--------------QDLQRRLAADPDDVEAALALADQLHLVGRNEAA 255 (304)
T ss_pred HH--------------HHHHHHHHHHHhcCCCH--------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 00 11112333333222111 112222335777777777777777777777777
Q ss_pred HHHHHHHHhcCC
Q 009799 409 IQHYTESLRRNP 420 (525)
Q Consensus 409 ~~~~~~al~~~~ 420 (525)
.+.+-..++.+-
T Consensus 256 le~Ll~~l~~d~ 267 (304)
T COG3118 256 LEHLLALLRRDR 267 (304)
T ss_pred HHHHHHHHHhcc
Confidence 777766665543
No 266
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.64 E-value=0.0045 Score=59.27 Aligned_cols=123 Identities=16% Similarity=0.076 Sum_probs=99.8
Q ss_pred cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcc
Q 009799 263 KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (525)
Q Consensus 263 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
..+.+.|...+.......|+..-..+..|.++...|+.++|+..|++++.......... .-.++.++.++..+.+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~---~l~~~El~w~~~~~~~-- 320 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLH---HLCYFELAWCHMFQHD-- 320 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHH---HHHHHHHHHHHHHHch--
Confidence 46788999999999999999999999999999999999999999999985443333322 5668889999999999
Q ss_pred cchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCC-cHHHHHHhhhHHHhcCCh-------hHHHHHHHH
Q 009799 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK-IADEEREKGNEFFKQQKY-------PEAIQHYTE 414 (525)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~-------~~A~~~~~~ 414 (525)
|++|..++.+..+ .+.- .....+..|.++...|+. ++|.++|.+
T Consensus 321 --w~~A~~~f~~L~~--------------------------~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 321 --WEEAAEYFLRLLK--------------------------ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred --HHHHHHHHHHHHh--------------------------ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 9999999999987 3332 344556778888889988 888888887
Q ss_pred HHhc
Q 009799 415 SLRR 418 (525)
Q Consensus 415 al~~ 418 (525)
+-..
T Consensus 373 vp~l 376 (468)
T PF10300_consen 373 VPKL 376 (468)
T ss_pred HHHH
Confidence 7544
No 267
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.58 E-value=0.00051 Score=42.27 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
+.++.+|..+.++|+|++|..+.+.++++.|+|.++......+...+.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4567788888888888888888888888888888887777666665543
No 268
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.54 E-value=0.076 Score=49.60 Aligned_cols=430 Identities=9% Similarity=0.030 Sum_probs=233.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHH-HHHHhh
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRL-GAAHLG 82 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~ 82 (525)
+|+.+-+.+-.+ -+++....|++.+...|..+.+|.......+..++|+.....|.+++..-= +.+.|... -.+...
T Consensus 22 sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~ 99 (656)
T KOG1914|consen 22 SWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRET 99 (656)
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHH
Confidence 455555544444 999999999999999999999999999999999999999999999986542 24444332 222223
Q ss_pred hhhHHHHHH----HHHHhh---ccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCccccc
Q 009799 83 LQDYIEAVN----SYKKGL---DIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYL 155 (525)
Q Consensus 83 ~g~~~~A~~----~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
.|+...+.. .|+-++ ..++.....|......+.......+ .++.. .+-..-..+++....|-...-.
T Consensus 100 ~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk----~ee~Q--RI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 100 KGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGK----YEENQ--RITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred ccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccccccc----HHHHH--HHHHHHHHHHHHhcCccccHHH
Confidence 333333222 222222 2456666666666555443311100 00000 0000000000000111000000
Q ss_pred chHHHHHHHHHHhh------CCCchhHHhhHHHHHHHHHHHHh-hhccCCCCCCccccccccCCCCCCCchhhccCCCCC
Q 009799 156 DQDDFRNMMKDIQR------NPNNLNLYLKDQRVMQALGVLLN-VKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESE 228 (525)
Q Consensus 156 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (525)
-=..+..+...+.. -.+....|++..++...+..+.. +... .+...
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~---------------------------~~~vp 226 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRN---------------------------APAVP 226 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhccc---------------------------CCCCC
Confidence 00011111111110 01112223333333333332221 1111 11111
Q ss_pred CCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhc------cc-H-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcC-
Q 009799 229 PEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKK------KE-F-EKAIEHYSSALELDDEDISYLTNRAAVYLEMGK- 299 (525)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~- 299 (525)
+...+..+ .....|.+.-..-... |. . ..-.-.|++++..-+..+++|+..+..+...++
T Consensus 227 ~~~T~~e~-----------~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l 295 (656)
T KOG1914|consen 227 PKGTKDEI-----------QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDL 295 (656)
T ss_pred CCCChHHH-----------HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Confidence 11111111 1222222222111111 11 1 122334667777777788888877776666666
Q ss_pred -------------HHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhh---HHHhhhcccchHHHHHHHHHHHhcCCChh
Q 009799 300 -------------YEECIKDCDKAVERGRELRSDFKMIARALTRKGTA---LVKMAKCSKDYEPAIETFQKALTEHRNPD 363 (525)
Q Consensus 300 -------------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 363 (525)
.+++..+|++++...... . ...++.++.. ...-.+ ++.....+++++......-
T Consensus 296 ~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~---~---~~Ly~~~a~~eE~~~~~n~----~~~~~~~~~~ll~~~~~~~ 365 (656)
T KOG1914|consen 296 LTEKGDVPDAKSLTDEAASIYERAIEGLLKE---N---KLLYFALADYEESRYDDNK----EKKVHEIYNKLLKIEDIDL 365 (656)
T ss_pred HHHhcccccchhhHHHHHHHHHHHHHHHHHH---H---HHHHHHHHhhHHHhcccch----hhhhHHHHHHHHhhhccCC
Confidence 788999999988743322 1 2222322221 122122 6667777777776544321
Q ss_pred ---------HHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhH-HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 364 ---------TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE-FFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACY 433 (525)
Q Consensus 364 ---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 433 (525)
...+..-++.|...|.++-+.....-.++..-|.+ |...++..-|..+|+-.++..++++..-......+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 12333445667777777766544433444444433 55689999999999999999999998888888889
Q ss_pred HHcCCchHHHHHHHHHHhc--CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Q 009799 434 TKLGAMPEGLKDADKCIEL--DPTF-SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 489 (525)
..+++-..|...|++++.. .|+. ...|-..-..-..-|+....++.=++-....|.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 9999999999999999987 4432 356666666667788888888877777766663
No 269
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.52 E-value=0.00013 Score=40.74 Aligned_cols=30 Identities=33% Similarity=0.477 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHhhccCC
Q 009799 38 LYSNRSAAHASLHNYADALADAKKTVELKP 67 (525)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 67 (525)
+|+.+|.++..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344445555555555555555555544444
No 270
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.51 E-value=0.0017 Score=46.64 Aligned_cols=92 Identities=22% Similarity=0.294 Sum_probs=78.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCchh---HHHHHHHHHHhhccc-----------HHHHHHHHHHhhccCCCCHHHH
Q 009799 8 KGNAAFSSGDYEAAVRHFTEAISLSPDNH---VLYSNRSAAHASLHN-----------YADALADAKKTVELKPDWSKGY 73 (525)
Q Consensus 8 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 73 (525)
+|..++..|++-+|+++.+..+...+++. ..+..-|.++..+.. .-.+++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999988766 556667777765543 4568999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhcc
Q 009799 74 SRLGAAHLGLQDYIEAVNSYKKGLDI 99 (525)
Q Consensus 74 ~~la~~~~~~g~~~~A~~~~~~al~~ 99 (525)
+.+|.-+-....|++++.--++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998888888899999988888865
No 271
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.046 Score=45.95 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccc
Q 009799 266 FEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYE-ECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKD 344 (525)
Q Consensus 266 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (525)
..+-+.++.+++..+|.|..+|..+-.+....|++. .-++..+.++..+.++ -.+|...-.+....+.
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN-------YHaWshRqW~~r~F~~---- 162 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN-------YHAWSHRQWVLRFFKD---- 162 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc-------hhhhHHHHHHHHHHhh----
Confidence 344455566666666666666666666666666555 5555566666555544 2333333333333333
Q ss_pred hHHHHHHHHHHHh
Q 009799 345 YEPAIETFQKALT 357 (525)
Q Consensus 345 ~~~A~~~~~~~~~ 357 (525)
++.-+.+....++
T Consensus 163 ~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 163 YEDELAYADELLE 175 (318)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555555
No 272
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.047 Score=45.91 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=128.4
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhH
Q 009799 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEM-GKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTAL 335 (525)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (525)
--++.....-..|+..-..++..+|.+..+|..+-.++..+ .+..+-++++..++..+|++ -.+|...-.+.
T Consensus 50 RAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-------YQvWHHRr~iv 122 (318)
T KOG0530|consen 50 RAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-------YQVWHHRRVIV 122 (318)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-------hhHHHHHHHHH
Confidence 33556677789999999999999999999998887777665 46788889999999999998 45555555555
Q ss_pred HHhhhcccchH-HHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHH
Q 009799 336 VKMAKCSKDYE-PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTE 414 (525)
Q Consensus 336 ~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 414 (525)
...+. +. .-++..+.++. .+..+.-+|...-.++...+.++.-+.+..+
T Consensus 123 e~l~d----~s~rELef~~~~l~--------------------------~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 123 ELLGD----PSFRELEFTKLMLD--------------------------DDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHhcC----cccchHHHHHHHHh--------------------------ccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555 55 55666666666 5555666666666666666667777776666
Q ss_pred HHhcCCCCHHHHHHHHHHHHH-cCC-----chHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hc--CHHHHHHHHHHHh-
Q 009799 415 SLRRNPKDPRTYSNRAACYTK-LGA-----MPEGLKDADKCIELDPTFSKGYTRKGAIQFF-LK--EYDKALETYQEGL- 484 (525)
Q Consensus 415 al~~~~~~~~~~~~la~~~~~-~~~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~a~- 484 (525)
.++.+--+-.+|+..-.+... .|- .+.-+.+..+.|...|++..+|..|.-++.. .| -...-.......+
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~ 252 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYL 252 (318)
T ss_pred HHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhh
Confidence 666655444444332222111 111 2233455556666667777777666666654 33 1122222222222
Q ss_pred ccCCCCHHHHHHHHHHH
Q 009799 485 KHDPQNQELLDGVRRCV 501 (525)
Q Consensus 485 ~~~p~~~~~~~~l~~~~ 501 (525)
...-.+|..+..+...+
T Consensus 253 ~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 253 QLPKRSPFLLAFLLDLY 269 (318)
T ss_pred ccCCCChhHHHHHHHHH
Confidence 33344455555555555
No 273
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.37 E-value=0.00033 Score=38.71 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 459 GYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45666777777777777777777777766653
No 274
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.36 E-value=0.0088 Score=54.86 Aligned_cols=170 Identities=12% Similarity=-0.019 Sum_probs=114.1
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 009799 276 ALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKA 355 (525)
Q Consensus 276 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 355 (525)
.+..+|.+.+++..++.++..+|+...|.+.+++++-...............-...|.+...-
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~----------------- 94 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDY----------------- 94 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCC-----------------
Confidence 356799999999999999999999999999999987643211000000000000001100000
Q ss_pred HhcCCChhHHHHhchHHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC-CHH-HHHHHH
Q 009799 356 LTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI---ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK-DPR-TYSNRA 430 (525)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~-~~~~la 430 (525)
..+.+ ..+.+.....+.+.|-+..|.++.+-.+.++|. ||. +++.+-
T Consensus 95 ----------------------------~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID 146 (360)
T PF04910_consen 95 ----------------------------RRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFID 146 (360)
T ss_pred ----------------------------ccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHH
Confidence 11222 334456677788999999999999999999998 663 455555
Q ss_pred HHHHHcCCchHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhcCH---------------HHHHHHHHHHhccCCCC
Q 009799 431 ACYTKLGAMPEGLKDADKCIELDP-----TFSKGYTRKGAIQFFLKEY---------------DKALETYQEGLKHDPQN 490 (525)
Q Consensus 431 ~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~a~~~~p~~ 490 (525)
....+.++|+--+..++....... ..|..-+..+.+++..++. +.|...+.+|+...|.-
T Consensus 147 ~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 147 YYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 666777888777777776554211 1345667888888888888 89999999999988853
No 275
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.31 E-value=0.23 Score=49.90 Aligned_cols=216 Identities=15% Similarity=0.135 Sum_probs=117.2
Q ss_pred cccHHHHHHHHHHHhhcC--CCCHHH----HHHHHHHHHHhcCHHHHHHHHHHHHHccccC----hhhHHHHHHHHHHhh
Q 009799 263 KKEFEKAIEHYSSALELD--DEDISY----LTNRAAVYLEMGKYEECIKDCDKAVERGREL----RSDFKMIARALTRKG 332 (525)
Q Consensus 263 ~~~~~~A~~~~~~~l~~~--p~~~~~----~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~ 332 (525)
.+++..|+..++...... +.++.+ ....+.+....+..+++++.++++....... ...... -.++..+-
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~q-L~~~~lll 230 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQ-LKALFLLL 230 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHH-HHHHHHHH
Confidence 379999999999988765 344433 3334666777788888888888875432211 001111 22333333
Q ss_pred hhHHHhhhcccchHHHHHHH---HHHHhcCCChh----------HHHHhchHHHHHHHHHHHhhcCC-C--cHHHHHHhh
Q 009799 333 TALVKMAKCSKDYEPAIETF---QKALTEHRNPD----------TLKKLNEAEKAKKELEQQEIFDP-K--IADEEREKG 396 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~---~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~l~ 396 (525)
.+...+.. +++..+...+ +..+....... +....+....+-....-.+..-| . ..-+|..-|
T Consensus 231 ~l~~~l~~--~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~ 308 (608)
T PF10345_consen 231 DLCCSLQQ--GDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSG 308 (608)
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHH
Confidence 33322222 1144444433 33333211110 00000000000000000000000 0 112334446
Q ss_pred hHHHhcCChhHHHHHHHHHHhcC-------CCC-------------------HHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 397 NEFFKQQKYPEAIQHYTESLRRN-------PKD-------------------PRTYSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~-------~~~-------------------~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
......+..++|.++++++++.- +.. ..+....+.+..-.+++..|...++.+.
T Consensus 309 l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~ 388 (608)
T PF10345_consen 309 LHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMR 388 (608)
T ss_pred HHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 66677777778888888876431 111 0234667888888999999999988777
Q ss_pred hcC---CC------CHHHHHHHHHHHHHhcCHHHHHHHHH
Q 009799 451 ELD---PT------FSKGYTRKGAIQFFLKEYDKALETYQ 481 (525)
Q Consensus 451 ~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (525)
... |. .+..++..|..+...|+.+.|...|.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 389 QLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 652 22 36788999999999999999999998
No 276
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.28 E-value=0.001 Score=56.73 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=57.6
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhH
Q 009799 39 YSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (525)
Q Consensus 39 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (525)
-...|.-..+.|+.++|...|+.++.+.|++++++..+|.+....++.-+|-.+|-+++.++|.+.+++...++.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 334455556778888888888888888888888888888888888888888888888888888888777666554
No 277
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.28 Score=49.79 Aligned_cols=218 Identities=14% Similarity=0.063 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
+.+..|..+|....+.|...+|++.|-++ +++..+.....+..+.|.|++-++++.-+-+...+....
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id------- 1169 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID------- 1169 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch-------
Confidence 34556666666666666666666666553 455566666666666666666666666665543322111
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC-------hhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN-------PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
..+-.+|.+.++ ..+-. ..+. .|+ ++-+...+.++.|.-+|. +..-|..++..+.
T Consensus 1170 -~eLi~AyAkt~r----l~elE----~fi~-gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1170 -SELIFAYAKTNR----LTELE----EFIA-GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLV 1231 (1666)
T ss_pred -HHHHHHHHHhch----HHHHH----HHhc-CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHH
Confidence 011111222222 22211 1111 111 111222233333333322 2233445556666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 009799 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETY 480 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (525)
..|+|+.|+..-+++- +..+|-..+..+...+++.-|.-+=-..+ -+++-+-.+...|...|-+++-+..+
T Consensus 1232 ~LgeyQ~AVD~aRKAn-----s~ktWK~VcfaCvd~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKAN-----STKTWKEVCFACVDKEEFRLAQICGLNII----VHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHHHhhhcc-----chhHHHHHHHHHhchhhhhHHHhcCceEE----EehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 6666666666555542 22333333333333333332221110000 02333445566666677777777777
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHh
Q 009799 481 QEGLKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 481 ~~a~~~~p~~~~~~~~l~~~~~~~ 504 (525)
+.++-+...+......|+.+|.+.
T Consensus 1303 Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1303 EAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HhhhchhHHHHHHHHHHHHHHHhc
Confidence 777776666666666666666543
No 278
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.25 E-value=0.0011 Score=61.70 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=96.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCch-hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhH
Q 009799 8 KGNAAFSSGDYEAAVRHFTEAISLSPDN-HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDY 86 (525)
Q Consensus 8 ~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 86 (525)
.|..+...|+...|+.++..|+...|.. -....++|.+.+..|-..+|-..+.+++.+....+-.++.+|..+..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 3445567899999999999999999864 356889999999999999999999999999987888999999999999999
Q ss_pred HHHHHHHHHhhccCCCcHHHHhhHHhHHHH
Q 009799 87 IEAVNSYKKGLDIDPNNEALKSGLADAKAA 116 (525)
Q Consensus 87 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (525)
+.|++.|+.+++++|+++.....+..+...
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRCM 722 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 999999999999999999988777666553
No 279
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.23 E-value=0.00061 Score=37.60 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhccCCC
Q 009799 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102 (525)
Q Consensus 72 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 102 (525)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444455555555555555555555544443
No 280
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.21 E-value=0.0017 Score=55.37 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=53.3
Q ss_pred HHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009799 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI 466 (525)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 466 (525)
...+.-..+.|+.++|...|+.++.+.|+++.++..+|......++.-+|-.+|-+|+.++|.+..++.+.+..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34444556677777777777777777777777777777777777777777777777777777777777666553
No 281
>PRK10941 hypothetical protein; Provisional
Probab=97.21 E-value=0.0041 Score=54.02 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009799 424 RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRR 499 (525)
Q Consensus 424 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 499 (525)
..+.++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+......
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3456777788888889999999999998999888888888999999999999999999988888888776554333
No 282
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.0056 Score=56.15 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHhccCC
Q 009799 410 QHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE-YDKALETYQEGLKHDP 488 (525)
Q Consensus 410 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p 488 (525)
..|+.+....+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 445555555555555555555444444445555555555555555555555555544444333 5555555555555555
Q ss_pred CCHHHHHH
Q 009799 489 QNQELLDG 496 (525)
Q Consensus 489 ~~~~~~~~ 496 (525)
+++.+|..
T Consensus 172 dsp~Lw~e 179 (568)
T KOG2396|consen 172 DSPKLWKE 179 (568)
T ss_pred CChHHHHH
Confidence 55554443
No 283
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.20 E-value=0.3 Score=48.90 Aligned_cols=213 Identities=16% Similarity=0.059 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC--C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChh
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE--D-------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 319 (525)
.+......+.......++.+|..++.++...-|. . ....-..|.+....|++++|.+..+.++..-|....
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3445556678888889999999998887665433 1 244556688888999999999999999998887643
Q ss_pred hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHH
Q 009799 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF 399 (525)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (525)
... ..++...|.+..-.|+ +++|..+...+.+.....+ ..+-...+....+.++
T Consensus 494 ~~r--~~~~sv~~~a~~~~G~----~~~Al~~~~~a~~~a~~~~--------------------~~~l~~~~~~~~s~il 547 (894)
T COG2909 494 RSR--IVALSVLGEAAHIRGE----LTQALALMQQAEQMARQHD--------------------VYHLALWSLLQQSEIL 547 (894)
T ss_pred hhh--hhhhhhhhHHHHHhch----HHHHHHHHHHHHHHHHHcc--------------------cHHHHHHHHHHHHHHH
Confidence 332 5566777777777777 9999988888776322111 1112233444557777
Q ss_pred HhcCC--hhHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc----CCCC--HH-HHHHHHHH
Q 009799 400 FKQQK--YPEAIQHYTESL----RRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL----DPTF--SK-GYTRKGAI 466 (525)
Q Consensus 400 ~~~~~--~~~A~~~~~~al----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~ 466 (525)
..+|+ +.+....+...- ...|-+.......+.++..--+++.+.......++. .|.. .. +++.++.+
T Consensus 548 ~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l 627 (894)
T COG2909 548 EAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAEL 627 (894)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHH
Confidence 77883 333333333221 223333223333333332222255555555555443 2322 22 23478888
Q ss_pred HHHhcCHHHHHHHHHHHhccC
Q 009799 467 QFFLKEYDKALETYQEGLKHD 487 (525)
Q Consensus 467 ~~~~g~~~~A~~~~~~a~~~~ 487 (525)
++..|+.++|...+.....+.
T Consensus 628 ~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 628 EFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHHh
Confidence 899999999988888877653
No 284
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.19 E-value=0.092 Score=47.33 Aligned_cols=168 Identities=16% Similarity=0.104 Sum_probs=113.2
Q ss_pred HhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHH
Q 009799 296 EMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAK 375 (525)
Q Consensus 296 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~ 375 (525)
..+++..+...+..+-.... ......++.++..-..-..+..+|..+|..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a------------------- 104 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---------AAALALLGQMYGAGKGVSRDKTKAADWYRCAA------------------- 104 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---------hHHHHHHHHHHHhccCccccHHHHHHHHHHHh-------------------
Confidence 34556666666666554211 23445555555444433444777777777544
Q ss_pred HHHHHHhhcCCCcHHHHHHhhhHHHh----cCChhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-------CchHHH
Q 009799 376 KELEQQEIFDPKIADEEREKGNEFFK----QQKYPEAIQHYTESLRRNPKD-PRTYSNRAACYTKLG-------AMPEGL 443 (525)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~-------~~~~A~ 443 (525)
....+...+.+|.++.. ..++.+|..+|+++.+..... ..+.+.+|.+|..-. +...|.
T Consensus 105 ---------~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~ 175 (292)
T COG0790 105 ---------ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKAL 175 (292)
T ss_pred ---------hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence 34567777888888877 448899999999988875443 344777887777642 223688
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009799 444 KDADKCIELDPTFSKGYTRKGAIQFF----LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 444 ~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 505 (525)
..|.++-... ++.+.+.+|.+|.. ..++.+|..+|+++-+... ......++ ++..-|
T Consensus 176 ~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 176 YLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 8888887765 67888889988865 3488999999999988877 77777777 555444
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.18 E-value=0.15 Score=45.29 Aligned_cols=172 Identities=17% Similarity=0.054 Sum_probs=114.1
Q ss_pred HHHhcCHHHHHHHHHHHHHcc-ccChhhHHHHHHHHHHhhhhHHHhh-hcccchHHHHHHHHHHHhcCCChhHHHHhchH
Q 009799 294 YLEMGKYEECIKDCDKAVERG-RELRSDFKMIARALTRKGTALVKMA-KCSKDYEPAIETFQKALTEHRNPDTLKKLNEA 371 (525)
Q Consensus 294 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (525)
....|+.+.|..++.++-... ..++.....+++.+++.|......+ + ++.|..+++++.+.-..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~----~~~a~~wL~~a~~~l~~~--------- 69 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK----YEEAVKWLQRAYDILEKP--------- 69 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHHHhh---------
Confidence 356889999999999987766 5566677788999999999999988 8 999999999998852210
Q ss_pred HHHHHHHHHHhhcCCC----cHHHHHHhhhHHHhcCCh---hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHH
Q 009799 372 EKAKKELEQQEIFDPK----IADEEREKGNEFFKQQKY---PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444 (525)
Q Consensus 372 ~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 444 (525)
.+.....|+ ...++..++.++...+.+ ++|....+.+-...|+.+.++...-.+..+.++.+++.+
T Consensus 70 -------~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~ 142 (278)
T PF08631_consen 70 -------GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEE 142 (278)
T ss_pred -------hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHH
Confidence 000012222 234566788888887764 456666666667778777777665566666888899999
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHH-HHHhcCHHHHHHHHHHHhc
Q 009799 445 DADKCIELDP-TFSKGYTRKGAI-QFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 445 ~~~~al~~~p-~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~ 485 (525)
.+.+++..-+ .....-..+..+ .........|...+...+.
T Consensus 143 ~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 143 ILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 9988887643 111111112222 1122344567777766664
No 286
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.15 E-value=0.0045 Score=43.59 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=52.1
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC--HHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009799 21 AVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW--SKGYSRLGAAHLGLQDYIEAVNSYKK 95 (525)
Q Consensus 21 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 95 (525)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+|++ ..+.-.+-.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3567788888899999999999999999999999999999998888765 45556666666666654444444443
No 287
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.15 E-value=0.021 Score=51.78 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=78.7
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhhccc------------HHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHH
Q 009799 23 RHFTEAISLSPDNHVLYSNRSAAHASLHN------------YADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (525)
Q Consensus 23 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 90 (525)
..|++.+..+|.+..+|..+....-..-. .+.-+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46888899999999999998876644422 456788999999999999999998888888888999999
Q ss_pred HHHHHhhccCCCcHHHHhhHHhHHHH
Q 009799 91 NSYKKGLDIDPNNEALKSGLADAKAA 116 (525)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (525)
.-+++++..+|++...|..+......
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 99999999999999988877655443
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.28 Score=47.49 Aligned_cols=191 Identities=15% Similarity=0.104 Sum_probs=119.5
Q ss_pred hcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhc
Q 009799 262 KKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKC 341 (525)
Q Consensus 262 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (525)
--|++++|.+.|-.+-+.+ .-..++...|+|-.....++.. . .......+..++..+|..+..+..
T Consensus 746 ~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g----~-~d~dD~~~e~A~r~ig~~fa~~~~- 811 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNG----G-SDDDDEGKEDAFRNIGETFAEMME- 811 (1189)
T ss_pred hhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHcc----C-CCcchHHHHHHHHHHHHHHHHHHH-
Confidence 3488899988886543221 1223556678877766655432 1 122233447889999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC
Q 009799 342 SKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421 (525)
Q Consensus 342 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 421 (525)
|++|.++|...-......+++..+..+++-..+. ..-|++...+-.+|.++...|.-++|++.|-+.- .|.
T Consensus 812 ---We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk 882 (1189)
T KOG2041|consen 812 ---WEEAAKYYSYCGDTENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK 882 (1189)
T ss_pred ---HHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH
Confidence 9999999998877666667777776666544333 3457777788889999999999999998875531 221
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 422 DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 422 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
+ --.....++++.+|.+..++-- -|.-.......+.-+...++.-+|++..+++
T Consensus 883 ---a---Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 ---A---AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 1122345666777776655421 1222222233333445556666666666665
No 289
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.13 E-value=0.19 Score=45.32 Aligned_cols=193 Identities=18% Similarity=0.156 Sum_probs=134.1
Q ss_pred HHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhh
Q 009799 259 AAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEM----GKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTA 334 (525)
Q Consensus 259 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (525)
.....+++..|...+..+-.. .++.....++.+|... .+..+|...|..+.... . +...+.+|.+
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~-------~~a~~~lg~~ 118 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--L-------AEALFNLGLM 118 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--c-------HHHHHhHHHH
Confidence 344577888999998887662 3346777888887763 46888999998655432 2 3455566666
Q ss_pred HHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC-------ChhH
Q 009799 335 LVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ-------KYPE 407 (525)
Q Consensus 335 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~ 407 (525)
+..-.-...|..+|..+|.++....... -......+|.++..-. +...
T Consensus 119 ~~~G~gv~~d~~~A~~~~~~Aa~~g~~~-------------------------a~~~~~~l~~~~~~g~~~~~~~~~~~~ 173 (292)
T COG0790 119 YANGRGVPLDLVKALKYYEKAAKLGNVE-------------------------AALAMYRLGLAYLSGLQALAVAYDDKK 173 (292)
T ss_pred HhcCCCcccCHHHHHHHHHHHHHcCChh-------------------------HHHHHHHHHHHHHcChhhhcccHHHHh
Confidence 6552212235889999999888732111 0233556666665531 2347
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc------------
Q 009799 408 AIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK------------ 471 (525)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------ 471 (525)
|...|.++-... ++.+...+|.+|.. ..++.+|..+|.++-+... ....+.++ ++...|
T Consensus 174 A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~ 248 (292)
T COG0790 174 ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAA 248 (292)
T ss_pred HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccc
Confidence 888888887765 77888899988865 3478999999999998866 88888888 766665
Q ss_pred ---CHHHHHHHHHHHhccCCCCHH
Q 009799 472 ---EYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 472 ---~~~~A~~~~~~a~~~~p~~~~ 492 (525)
+...|..++..+....+....
T Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 249 KEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred cCCCHHHHHHHHHHHHHcCChhHH
Confidence 788889999888877665443
No 290
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.12 E-value=0.0023 Score=39.39 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHH
Q 009799 38 LYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRL 76 (525)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 76 (525)
.++.+|..+.++|+|++|..+++.+++..|+|..+....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 445555556666666666666666666666655544443
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.11 E-value=0.18 Score=44.82 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhcccH---HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccc
Q 009799 249 KALKEKEAGNAAYKKKEF---EKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGR 315 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 315 (525)
...++..++.++...+.+ ++|...++.+-...|+.+.++...-.+....++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 455566777778776655 4566677777777888888886666666668999999999999988543
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.10 E-value=0.007 Score=47.09 Aligned_cols=85 Identities=19% Similarity=0.096 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
..++.........++.+++...+...--+.|+.+..-..-|..++..|+|.+|+..++.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 46778888889999999999999999999999999999999999999999999999999999999999888899999988
Q ss_pred hhhHH
Q 009799 83 LQDYI 87 (525)
Q Consensus 83 ~g~~~ 87 (525)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 88753
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.08 E-value=0.00083 Score=37.88 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh
Q 009799 460 YTRKGAIQFFLKEYDKALETYQEGL 484 (525)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~ 484 (525)
+..+|.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 294
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.0023 Score=58.85 Aligned_cols=103 Identities=28% Similarity=0.304 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhc---ccHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASL---HNYADALADAKKTVELKPDWSKGYSRLGAA 79 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 79 (525)
+.++..|+-.+..+....|+..|.+++...|.....+.+++.++++. |+.-.|+..+..++.++|....+++.++++
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence 55677788888888999999999999999999999999999999875 567778999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhhccCCCcHH
Q 009799 80 HLGLQDYIEAVNSYKKGLDIDPNNEA 105 (525)
Q Consensus 80 ~~~~g~~~~A~~~~~~al~~~p~~~~ 105 (525)
+..++++.+|+.+...+....|.+..
T Consensus 455 L~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 455 LNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 99999999999999988888886654
No 295
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.05 E-value=0.42 Score=47.92 Aligned_cols=208 Identities=14% Similarity=0.012 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDED-----ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
...-..|.+....|+++.|++..+.++..-|.+ ..+...+|.+..-.|++++|..+...+.+........+ ...
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~-l~~ 537 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH-LAL 537 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH-HHH
Confidence 334445788889999999999999999987765 35677889999999999999999999988755443222 223
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.+....+.++...|+ -.+.+....|...-. +-+...|.........+.++...-++
T Consensus 538 ~~~~~~s~il~~qGq--~~~a~~~~~~~~~~~----------------------q~l~q~~~~~f~~~~r~~ll~~~~r~ 593 (894)
T COG2909 538 WSLLQQSEILEAQGQ--VARAEQEKAFNLIRE----------------------QHLEQKPRHEFLVRIRAQLLRAWLRL 593 (894)
T ss_pred HHHHHHHHHHHHhhH--HHHHHHHHHHHHHHH----------------------HHhhhcccchhHHHHHHHHHHHHHHH
Confidence 444455555555553 003333333332221 11112333333333333333333335
Q ss_pred hHHHHHHHHHHhc----CCCC--H-HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC-HH----H--HHHHHHHHHHhc
Q 009799 406 PEAIQHYTESLRR----NPKD--P-RTYSNRAACYTKLGAMPEGLKDADKCIELDPTF-SK----G--YTRKGAIQFFLK 471 (525)
Q Consensus 406 ~~A~~~~~~al~~----~~~~--~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~----~--~~~la~~~~~~g 471 (525)
+.+..-....++. .|.. + ..++.++.++...|++++|...+......-.+. +. + ...........|
T Consensus 594 ~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg 673 (894)
T COG2909 594 DLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQG 673 (894)
T ss_pred hhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccC
Confidence 5555555554433 2222 1 223578888999999999988888776542211 11 1 111222234578
Q ss_pred CHHHHHHHHHHH
Q 009799 472 EYDKALETYQEG 483 (525)
Q Consensus 472 ~~~~A~~~~~~a 483 (525)
+.++|..+..+.
T Consensus 674 ~~~~a~~~l~~s 685 (894)
T COG2909 674 DKELAAEWLLKS 685 (894)
T ss_pred CHHHHHHHHHhc
Confidence 888888888773
No 296
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.99 E-value=0.0076 Score=42.44 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHhhh
Q 009799 443 LKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN--QELLDGVRRCVQQINK 506 (525)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~ 506 (525)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+|+. ..+...+-.+...+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666667666666777777777777777777666666666554 5566666666666664
No 297
>PRK10941 hypothetical protein; Provisional
Probab=96.99 E-value=0.0055 Score=53.22 Aligned_cols=79 Identities=14% Similarity=0.031 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHH
Q 009799 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (525)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (525)
..+.++-.++.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+......+..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4566778889999999999999999999999999999999999999999999999999999999999987665554433
No 298
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.95 E-value=0.019 Score=41.49 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCc------------hhHHHHHHHHHHhhcccHHHHHHHHHHhh-------ccC
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPD------------NHVLYSNRSAAHASLHNYADALADAKKTV-------ELK 66 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~ 66 (525)
+..|...+..|-|++|...+.++....-+ +..++-.|+.++..+|+|++++....+++ +++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 45667788899999999999999875321 45778889999999999999888777776 345
Q ss_pred CCCH----HHHHHHHHHHhhhhhHHHHHHHHHHhhcc
Q 009799 67 PDWS----KGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (525)
Q Consensus 67 p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 99 (525)
.+.. .+.+..|..+...|+.++|+..|+.+-+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5443 45567899999999999999999988653
No 299
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.36 Score=45.45 Aligned_cols=67 Identities=10% Similarity=-0.003 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHhcC-HHHHHHHHHHHhccCCCC
Q 009799 424 RTYSNRAACYTKLGAMPEGLKDADKCIEL---DPT----FSKGYTRKGAIQFFLKE-YDKALETYQEGLKHDPQN 490 (525)
Q Consensus 424 ~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~~ 490 (525)
--++.+|.++..+|+...|..+|...++. ..+ .|.+++.+|..++.+|. ..++..++.+|-+...++
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 34577899999999999999999888743 111 36789999999999988 999999999998877554
No 300
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.91 E-value=0.0016 Score=36.68 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 426 YSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 426 ~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
|.++|.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.90 E-value=0.022 Score=44.47 Aligned_cols=115 Identities=13% Similarity=-0.019 Sum_probs=91.4
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 467 (525)
....+..+..+-...++.+++...+.-.--+.|..+.+-..-|++++..|+|.+|+..++.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34566677777788899999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009799 468 FFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 468 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 504 (525)
..+|+.. =..+-..+++..| ++.+......++.+-
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~-d~~a~~Lv~~Ll~~~ 123 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGA-DPDARALVRALLARA 123 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCC-ChHHHHHHHHHHHhc
Confidence 9999853 2233344555544 566665555554443
No 302
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.89 E-value=0.12 Score=47.01 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=80.9
Q ss_pred HHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCchHHHHHHHHHHhcCC--
Q 009799 380 QQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK---LGAMPEGLKDADKCIELDP-- 454 (525)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p-- 454 (525)
++++.+|++...+..+-....+..+.++..+-+++++..+|+++.+|...-..... .-.+......|.+++..-.
T Consensus 56 rAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~ 135 (321)
T PF08424_consen 56 RALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR 135 (321)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 33337888888888888888888888888899999999999998888655444333 2346677777777775310
Q ss_pred ----------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Q 009799 455 ----------------TFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (525)
Q Consensus 455 ----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 488 (525)
....++..+.....+.|-.+.|+..++-.++++=
T Consensus 136 ~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 136 RSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 0123566777778889999999999999999853
No 303
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.88 E-value=0.041 Score=41.06 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHcCC---chHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHH
Q 009799 422 DPRTYSNRAACYTKLGA---MPEGLKDADKCIE-LDPT-FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (525)
Q Consensus 422 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 496 (525)
.....+++|+++....+ ..+.+.+++..++ -.|. .-+..+.++.-+.+.|+|+.++.+.+..++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45677888888887654 5667888888886 4443 34577888888999999999999999999999999888877
Q ss_pred HHHHHHHhhh
Q 009799 497 VRRCVQQINK 506 (525)
Q Consensus 497 l~~~~~~~~~ 506 (525)
-..+...+.+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 6666666554
No 304
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.86 E-value=0.078 Score=38.52 Aligned_cols=109 Identities=21% Similarity=0.219 Sum_probs=59.7
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC---hhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN---PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
++.+|..++..-.++.. +-|++|...+.+++..... .+.+. .+.-+..++-.++..+.
T Consensus 6 Va~aY~aLs~ae~ql~~--g~~~eAa~s~r~AM~~srtiP~eEaFD-----------------h~GFDA~chA~Ls~A~~ 66 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQD--GAYEEAAASCRKAMEVSRTIPAEEAFD-----------------HDGFDAFCHAGLSGALA 66 (144)
T ss_dssp HHHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHTTS-TTS--------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHhccCChHhhcc-----------------cccHHHHHHHHHHHHHH
Confidence 35666666555444433 3389999999988874322 11000 11123455667777888
Q ss_pred hcCChhHHHHHHHHHH-------hcCCCCHHHH----HHHHHHHHHcCCchHHHHHHHHHHh
Q 009799 401 KQQKYPEAIQHYTESL-------RRNPKDPRTY----SNRAACYTKLGAMPEGLKDADKCIE 451 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al-------~~~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~ 451 (525)
..|+|++++..-.+++ +++.+....| ++.|..+..+|+.++|+..|+.+-+
T Consensus 67 ~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 67 GLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 8888887776666555 3344333333 4455556666666666666665544
No 305
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=1.2 Score=49.94 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=93.2
Q ss_pred CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC-CC--------
Q 009799 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD-PT-------- 455 (525)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~-------- 455 (525)
+....+.|...|.+....|.++.|..++-.|.+.. -+.++...|......|+-..|+..+++.++.+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 44567899999999999999999999999888776 47889999999999999999999999999763 22
Q ss_pred --C------HHHHHHHHHHHHHhcCH--HHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009799 456 --F------SKGYTRKGAIQFFLKEY--DKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 456 --~------~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 505 (525)
. ..+....+......|++ .+-+.+|..+.++.|....-++.++.-+.++-
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll 1803 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLL 1803 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHh
Confidence 1 12344455555555653 34678999999999988888888876655544
No 306
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.78 E-value=0.052 Score=39.22 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=31.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhh
Q 009799 290 RAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAK 340 (525)
Q Consensus 290 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (525)
+|.-++..|++-+|+++.+..+...+++...+ ..+...|.++..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~----~lh~~QG~if~~lA~ 48 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW----LLHRLQGTIFYKLAK 48 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH----HHHHHHhHHHHHHHH
Confidence 45667888899999999998888877765432 445555555544433
No 307
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.76 E-value=0.0029 Score=34.52 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 489 (525)
.++..+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34566666666667777777777666666664
No 308
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.73 E-value=0.093 Score=48.28 Aligned_cols=85 Identities=14% Similarity=-0.023 Sum_probs=66.0
Q ss_pred hccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc--------------C------------CCC---HHHHHHHHHH
Q 009799 29 ISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--------------K------------PDW---SKGYSRLGAA 79 (525)
Q Consensus 29 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~~ 79 (525)
+..+|-+.+++..++.++..+|+...|.+.+++|+-. + +.| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4557888999999999999999999999999988622 1 122 2356667788
Q ss_pred HhhhhhHHHHHHHHHHhhccCCC-cHHHHhhHHhH
Q 009799 80 HLGLQDYIEAVNSYKKGLDIDPN-NEALKSGLADA 113 (525)
Q Consensus 80 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 113 (525)
+.+.|-+..|.++.+-.+.++|. |+-......+.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~ 147 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDY 147 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 88899999999999999999999 66544444433
No 309
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.52 Score=44.46 Aligned_cols=260 Identities=13% Similarity=0.036 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC----HHHHHHHHHHHhhhhhHHHHHHHHH
Q 009799 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW----SKGYSRLGAAHLGLQDYIEAVNSYK 94 (525)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 94 (525)
....+.+.......|+++...+..+..+...|+.+.|+..++..+. +.. .-.++.+|.++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444555556667899999999999999999999999999998887 332 3457789999999999999999999
Q ss_pred HhhccCCCcHHHHhhHH-hHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCc
Q 009799 95 KGLDIDPNNEALKSGLA-DAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNN 173 (525)
Q Consensus 95 ~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (525)
...+.+.-....+..++ -++...+...+......+ ....+.... ...+...++ ..-+.......+.+.....|-+
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~--~a~~~~k~~-~~l~~~a~K-~~P~E~f~~RKverf~~~~~~~ 403 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEE--KAQLYFKVG-EELLANAGK-NLPLEKFIVRKVERFVKRGPLN 403 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchh--HHHHHHHHH-HHHHHhccc-cCchhHHHHHHHHHHhcccccc
Confidence 98887665555555555 333222211111000000 000000000 000000000 0000011112222222222211
Q ss_pred hhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhh-HH-HHHHHHhHHHHH
Q 009799 174 LNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELT-EE-EKEAKERKEKAL 251 (525)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 251 (525)
....+.. -+.+..-.|.+...-+++. .+... .. ........+..-
T Consensus 404 ~~~~la~-P~~El~Y~Wngf~~~s~~~--------------------------------l~k~~~~~~~~~~~d~Dd~~l 450 (546)
T KOG3783|consen 404 ASILLAS-PYYELAYFWNGFSRMSKNE--------------------------------LEKMRAELENPKIDDSDDEGL 450 (546)
T ss_pred ccccccc-hHHHHHHHHhhcccCChhh--------------------------------HHHHHHHHhccCCCCchHHHH
Confidence 1110000 1111112222222111000 00000 00 000112234556
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhc---CCC----CHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHccccC
Q 009799 252 KEKEAGNAAYKKKEFEKAIEHYSSALEL---DDE----DISYLTNRAAVYLEMGK-YEECIKDCDKAVERGREL 317 (525)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~----~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~~~~ 317 (525)
.++.+|.++...|+...|..+|...++. ... -|.+++.+|.++..+|. ..++..++.+|-+...+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 6778899999999999999999988843 112 26789999999999999 999999999998866554
No 310
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.68 E-value=0.32 Score=41.29 Aligned_cols=102 Identities=11% Similarity=0.118 Sum_probs=68.2
Q ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 255 EAGNAAYKKKEFEKAIEHYSSALELDDE------------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 255 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
.+|.+++..++|.+-.+.+.+....+.. -.+++..-...|..+.+..+-...|++++.+....+. ..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH-Pl 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH-PL 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc-hH
Confidence 4677888888887777777766543321 1244555566788888888888889998886544322 22
Q ss_pred HHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC
Q 009799 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (525)
.++.+.-.-|..+...|+ +++|-..|-.+++....
T Consensus 229 ImGvIRECGGKMHlreg~----fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGE----FEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HHhHHHHcCCccccccch----HHHHHhHHHHHHhcccc
Confidence 235555556677777777 99998888888875443
No 311
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.58 E-value=0.069 Score=44.93 Aligned_cols=99 Identities=16% Similarity=0.038 Sum_probs=52.5
Q ss_pred cCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHH
Q 009799 298 GKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKE 377 (525)
Q Consensus 298 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 377 (525)
..+++|+..|.-++-...-........+.++.+++.+|...++ .+....++++|+. .
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~----~~~E~~fl~~Al~-------------------~ 147 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD----EENEKRFLRKALE-------------------F 147 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC----HHHHHHHHHHHHH-------------------H
Confidence 3455666665555543221112222447777778877777776 5555555544443 1
Q ss_pred HHHHhhcC------CCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcC
Q 009799 378 LEQQEIFD------PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN 419 (525)
Q Consensus 378 ~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 419 (525)
|.++.+.. -+...+.+.+|.+..+.|++++|..+|.+++...
T Consensus 148 y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 148 YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 22222111 1223455666666667777777777666666543
No 312
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.54 E-value=0.005 Score=33.51 Aligned_cols=30 Identities=47% Similarity=0.726 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhccCC
Q 009799 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDIDP 101 (525)
Q Consensus 72 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 101 (525)
++..+|.++...|+++.|+..|+++++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 313
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.28 Score=38.64 Aligned_cols=112 Identities=10% Similarity=0.078 Sum_probs=72.3
Q ss_pred HHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCchHHHHHHHHHH-hcCCCCHHHHHHHH
Q 009799 391 EEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP-----RTYSNRAACYTKLGAMPEGLKDADKCI-ELDPTFSKGYTRKG 464 (525)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la 464 (525)
+....|.+....|+...|+..|..+-...| .| .+...-+.++...|.|+....-.+..- ..+|-...+...||
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALg 174 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALG 174 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHh
Confidence 345566777778888888888877665544 22 233445566777777777666555432 23455556777788
Q ss_pred HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009799 465 AIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 504 (525)
..-++.|++..|..+|.++.. +.+.|....+.+.+...+
T Consensus 175 lAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 175 LAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 888888888888888888776 545555555555554443
No 314
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.49 E-value=0.042 Score=46.22 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=63.9
Q ss_pred hcCChhHHHHHHHHHHhc----CCC---CHHHHHHHHHHHHHcCCchH-------HHHHHHHHHhcC--CC----CHHHH
Q 009799 401 KQQKYPEAIQHYTESLRR----NPK---DPRTYSNRAACYTKLGAMPE-------GLKDADKCIELD--PT----FSKGY 460 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~----~~~---~~~~~~~la~~~~~~~~~~~-------A~~~~~~al~~~--p~----~~~~~ 460 (525)
....+++|++.|.-|+-. .++ -+.++..+|++|...|+.+. |...|.++++.. |. ...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345677888887777632 111 25678889999999998544 555555555442 22 25688
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
+.+|.+..+.|++++|..+|.+++...-.+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 899999999999999999999998764433
No 315
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.45 E-value=0.0046 Score=50.53 Aligned_cols=61 Identities=25% Similarity=0.454 Sum_probs=46.4
Q ss_pred HHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHH
Q 009799 45 AHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEA 105 (525)
Q Consensus 45 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 105 (525)
.....++.+.|.+.|.+++.+.|.....|+++|....+.|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3456677777777888888888877777888888888888888888888888888777643
No 316
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.44 E-value=0.16 Score=41.39 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 324 (525)
....++..+|..|.+.|+.+.|++.|.++....... .+.++.+..+.+..+++.....++.++-..-.. ...+...
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~ 112 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHH
Confidence 456788899999999999999999999988765443 467788888999999999999999998775443 3334444
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (525)
...-...|..+...++ |..|...|-.+....
T Consensus 113 nrlk~~~gL~~l~~r~----f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRD----FKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhch----HHHHHHHHHccCcCC
Confidence 5566666777777777 999999988777644
No 317
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=0.017 Score=53.52 Aligned_cols=103 Identities=22% Similarity=0.235 Sum_probs=84.2
Q ss_pred HHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009799 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG---AMPEGLKDADKCIELDPTFSKGYTRKGAI 466 (525)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 466 (525)
+.+..-|.--+..+....|+..|.+++...|.....+.+.+.++++.+ +.-.|+...-.++.++|....+++.|+.+
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence 333444444445566788999999999999999999999999888754 55667778888999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHhccCCCCHH
Q 009799 467 QFFLKEYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 467 ~~~~g~~~~A~~~~~~a~~~~p~~~~ 492 (525)
+..++++.+|+++...+....|.+..
T Consensus 455 L~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 455 LNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 99999999999999988888886543
No 318
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.43 E-value=0.75 Score=42.38 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=46.1
Q ss_pred HHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhh
Q 009799 432 CYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH-DPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 432 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~ 505 (525)
.++..|+|.++.-+-.=..++.| ++.++..+|.++...++|++|..++...=-. +-.+..+...+..|+..+.
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhhh
Confidence 35667777777777777777777 6777777788877777888877777653110 1112334445555555443
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.39 E-value=0.12 Score=38.66 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHhhccc---HHHHHHHHHHhhc-cCCC-CHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhh
Q 009799 35 NHVLYSNRSAAHASLHN---YADALADAKKTVE-LKPD-WSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSG 109 (525)
Q Consensus 35 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 109 (525)
.....+++|+++.+..+ ..+.+..++..++ -+|. .-+..+.++..+.+.++|+.++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 46788999999987764 6678899999996 5554 45788999999999999999999999999999999998766
Q ss_pred HHhHHHHH
Q 009799 110 LADAKAAA 117 (525)
Q Consensus 110 l~~~~~~~ 117 (525)
--.+....
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 65555544
No 320
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.12 Score=48.97 Aligned_cols=123 Identities=15% Similarity=0.023 Sum_probs=99.2
Q ss_pred cCCCcHHHHHH--hhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHH-HHhcCCCCHHHH
Q 009799 384 FDPKIADEERE--KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK-CIELDPTFSKGY 460 (525)
Q Consensus 384 ~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~ 460 (525)
.+|.++..... +...+...+....+...+..++..+|++..+..+++......|....+...+.. +....|++....
T Consensus 60 ~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (620)
T COG3914 60 INDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL 139 (620)
T ss_pred cCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH
Confidence 66677766443 477777888888999999999999999999999999998888877776666655 888888887766
Q ss_pred HHH------HHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 461 TRK------GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 461 ~~l------a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
..+ +.....+|+..++.....++..+.|.++.+...+.....+.-+
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 140 GHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence 555 8888889999999999999999999998888777766444433
No 321
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.33 E-value=0.0067 Score=49.61 Aligned_cols=58 Identities=26% Similarity=0.449 Sum_probs=35.8
Q ss_pred HHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH
Q 009799 434 TKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 491 (525)
...++.+.|.+.|.+++++-|+....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455566666666666666666666666666666666666666666666666666553
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.31 E-value=0.048 Score=41.74 Aligned_cols=84 Identities=15% Similarity=-0.053 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
.+..........++.+++...+...--+.|+.+..-..-|..++..|+|.+|+..++...+..|..+-+--.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45566666777888889888888888888998888888999999999999999999998888887788888888888888
Q ss_pred hhHH
Q 009799 84 QDYI 87 (525)
Q Consensus 84 g~~~ 87 (525)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8753
No 323
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.29 E-value=0.031 Score=50.22 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc--------CCch----------hHHHHHHHHHHhhcccHHHHHHHHHHhhccC
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISL--------SPDN----------HVLYSNRSAAHASLHNYADALADAKKTVELK 66 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 66 (525)
-+..|...+++++|..|..-|..++++ .|.. ..+--.+..||+++++.+-|+....+.+.++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 345677788888888888888888875 2211 1345678999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 009799 67 PDWSKGYSRLGAAHLGLQDYIEAVNSYKKG 96 (525)
Q Consensus 67 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 96 (525)
|.++.-++..|.|+..+.+|.+|...+--+
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876554
No 324
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.19 E-value=2 Score=44.87 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=83.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhc----c---cHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009799 8 KGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASL----H---NYADALADAKKTVELKPDWSKGYSRLG 77 (525)
Q Consensus 8 ~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 77 (525)
...+++....|+.|+..|+++-...|.. .++.+..|..++.. | .+.+|+..|++. .-.|.-|--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 3456788899999999999999998874 47788888877643 2 578888888874 45667777899999
Q ss_pred HHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhH
Q 009799 78 AAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGL 110 (525)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 110 (525)
.+|.++|++++-+++|.-+++..|+++..-...
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLR 592 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 999999999999999999999999998754443
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.17 E-value=0.086 Score=40.40 Aligned_cols=85 Identities=7% Similarity=-0.185 Sum_probs=71.4
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 468 (525)
..........-...++.+++...+...--+.|+.+.+-..-|++++..|+|.+|+..+....+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34445555555668889999998888888899999999999999999999999999999998888888888888999999
Q ss_pred HhcCH
Q 009799 469 FLKEY 473 (525)
Q Consensus 469 ~~g~~ 473 (525)
.+|+.
T Consensus 90 al~Dp 94 (153)
T TIGR02561 90 AKGDA 94 (153)
T ss_pred hcCCh
Confidence 98884
No 326
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.17 E-value=0.41 Score=40.68 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 263 KKEFEKAIEHYSSALELDDEDI----SYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 263 ~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
..++++|+.-|++++++.|... .++-.+..+++++|++++-...|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4589999999999999987754 4677788899999999999999988876
No 327
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.11 E-value=0.013 Score=50.25 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=48.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhcCHHHHHHHHHHHhccCCCCHHH
Q 009799 415 SLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTR-KGAIQFFLKEYDKALETYQEGLKHDPQNQEL 493 (525)
Q Consensus 415 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 493 (525)
+-...|+++..|...+....+.|.|.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...|.++++++|++|.+
T Consensus 99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 334445566666655555555556666666666666666666665554 3334445566666666666666666666665
Q ss_pred HHHH
Q 009799 494 LDGV 497 (525)
Q Consensus 494 ~~~l 497 (525)
|...
T Consensus 179 w~ey 182 (435)
T COG5191 179 WIEY 182 (435)
T ss_pred HHHH
Confidence 5543
No 328
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.043 Score=52.17 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCch------hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN------HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLG 77 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (525)
.+.+.|...|+..+|..++++|...+..-|.+ +.....++.||+.+.+.+.|.+++++|-+.+|.++-.....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 35678888999999999999999999887764 356778999999999999999999999999999998888888
Q ss_pred HHHhhhhhHHHHHHHHHHhhcc
Q 009799 78 AAHLGLQDYIEAVNSYKKGLDI 99 (525)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~al~~ 99 (525)
.+....|.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8899999999999998877654
No 329
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.10 E-value=0.014 Score=50.09 Aligned_cols=91 Identities=8% Similarity=0.023 Sum_probs=78.6
Q ss_pred HHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHH-HHHHHhhhhhHHHHHHHHHHhhccCCCc
Q 009799 25 FTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSR-LGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (525)
Q Consensus 25 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~ 103 (525)
|.++-...|+++..|...+..-.+.|-+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 344445578899999999998899999999999999999999999999987 5666778899999999999999999999
Q ss_pred HHHHhhHHhHHH
Q 009799 104 EALKSGLADAKA 115 (525)
Q Consensus 104 ~~~~~~l~~~~~ 115 (525)
+..|....++..
T Consensus 176 p~iw~eyfr~El 187 (435)
T COG5191 176 PRIWIEYFRMEL 187 (435)
T ss_pred chHHHHHHHHHH
Confidence 998877666543
No 330
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=1.4 Score=42.48 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=83.2
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (525)
-.++.+.+.-.++..+ |..+++.|...+...+... .+.........++.+|....+
T Consensus 354 H~iLWn~A~~~F~~~~----Y~~s~~~y~~Sl~~i~~D~--------------------~~~~FaK~qR~l~~CYL~L~Q 409 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEK----YVVSIRFYKLSLKDIISDN--------------------YSDRFAKIQRALQVCYLKLEQ 409 (872)
T ss_pred HHHHHHhhHHHHHHHH----HHHHHHHHHHHHHhccchh--------------------hhhHHHHHHHHHHHHHhhHHH
Confidence 3455566666777777 9999999998888655433 333446677888999999999
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
.+.|.+++++|-+.+|.++-.-..+-.+....|.-++|+.+.......
T Consensus 410 LD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 410 LDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 999999999999999999988888888888899999999988877654
No 331
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.92 E-value=0.054 Score=36.16 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhH---HHHHHHHHHhhcccHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHV---LYSNRSAAHASLHNYADALADAKKTV 63 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al 63 (525)
....+.|..++.+.+.++|+..++++++..++.+. ++-.+..+|...|+|.+++.+..+=+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888776554 34445556778888888777665443
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.89 E-value=0.052 Score=49.79 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=94.3
Q ss_pred hchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 009799 368 LNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDAD 447 (525)
Q Consensus 368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 447 (525)
.|+.-.|-..+..++...|..|......+.+....|+|+.|...+..+-..-.....+...+-+....+|++++|....+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 35555566666666778888888888889999999999999888776655544444555666677788899999998888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 448 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
..+...-+++++..--+..-..+|-+++|..++++.+.++|..
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8887776777776666666777888899999999999888754
No 333
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.61 Score=44.45 Aligned_cols=90 Identities=18% Similarity=0.101 Sum_probs=54.1
Q ss_pred HHHHHHHHhccCCchhHHHHH--HHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHH-hh
Q 009799 21 AVRHFTEAISLSPDNHVLYSN--RSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKK-GL 97 (525)
Q Consensus 21 A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 97 (525)
++..+...+.++|.++..+.. +...+...+....+.-.+..++..+|++..++..+|......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555555556666666655333 355556666666666666677777777777777776666666655555544444 56
Q ss_pred ccCCCcHHHHhhH
Q 009799 98 DIDPNNEALKSGL 110 (525)
Q Consensus 98 ~~~p~~~~~~~~l 110 (525)
...|.+......+
T Consensus 130 ~~~~~~~~~~~~~ 142 (620)
T COG3914 130 WLSPDNAEFLGHL 142 (620)
T ss_pred hcCcchHHHHhhH
Confidence 6666665544443
No 334
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=1.3 Score=39.26 Aligned_cols=178 Identities=15% Similarity=0.095 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhc----C--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHH
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALEL----D--DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 326 (525)
-..+...|+..++|.+|+......+.. + +.-.+++..-..+|....+..+|...+..+-.....-.-.....+.
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHH
Confidence 345678899999999999988777643 2 2234667777889999999999999888776543222222223356
Q ss_pred HHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChh
Q 009799 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (525)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (525)
+=..-|..+..-.+ |..|..+|-++++-....+ . ++.-..++..+-.+-...+..+
T Consensus 211 lDLqSGIlha~ekD----ykTafSYFyEAfEgf~s~~------~--------------~v~A~~sLKYMlLcKIMln~~d 266 (411)
T KOG1463|consen 211 LDLQSGILHAAEKD----YKTAFSYFYEAFEGFDSLD------D--------------DVKALTSLKYMLLCKIMLNLPD 266 (411)
T ss_pred HHHhccceeecccc----cchHHHHHHHHHccccccC------C--------------cHHHHHHHHHHHHHHHHhcCHH
Confidence 66667777776666 9999999999988543321 0 0111111222222222333333
Q ss_pred H--HHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCchHHHHHHHHHHhcCC
Q 009799 407 E--AIQHYTESLRRNPKDPRTYSNRAACYTK--LGAMPEGLKDADKCIELDP 454 (525)
Q Consensus 407 ~--A~~~~~~al~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p 454 (525)
+ ++-.-+.+++....+..++...|..+.+ +.+|+.|+..|..=+..+|
T Consensus 267 dv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 267 DVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 3 2223334455555556666666666543 3456666666666655544
No 335
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.77 E-value=0.15 Score=41.52 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCc---hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCC--CH----HHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD---NHVLYSNRSAAHASLHNYADALADAKKTVELKPD--WS----KGY 73 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~ 73 (525)
.++..+|.-|.+.|+++.|++.|.++...... ..+.++.+..+.+..|++.....+..++-..-.. +. ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56889999999999999999999998876443 2477888889999999999999999888665322 22 233
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhccC
Q 009799 74 SRLGAAHLGLQDYIEAVNSYKKGLDID 100 (525)
Q Consensus 74 ~~la~~~~~~g~~~~A~~~~~~al~~~ 100 (525)
...|..++..++|..|...|-.+..-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 456777788899999999997775443
No 336
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=1.2 Score=38.27 Aligned_cols=105 Identities=16% Similarity=0.080 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHH
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALEL------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 326 (525)
-..+...+++.|.|.+|+......+.. .|.-..++..-..+|....+..++...+..+-.....-.-.....+.
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~ 207 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQ 207 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHH
Confidence 345677889999999999988776642 24445777788889999999988888887765543221111122255
Q ss_pred HHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC
Q 009799 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (525)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (525)
.-..-|...+.-.+ |..|..+|-++++-...
T Consensus 208 lDL~sGIlhcdd~d----yktA~SYF~Ea~Egft~ 238 (421)
T COG5159 208 LDLLSGILHCDDRD----YKTASSYFIEALEGFTL 238 (421)
T ss_pred HHHhccceeecccc----chhHHHHHHHHHhcccc
Confidence 55566666666666 99999999999885544
No 337
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.93 Score=35.87 Aligned_cols=57 Identities=7% Similarity=0.062 Sum_probs=31.3
Q ss_pred HHHHhcccHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHcc
Q 009799 258 NAAYKKKEFEKAIEHYSSALELDDEDI--SYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (525)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 314 (525)
.-+.+.+..++|+..|..+-+..-.+. -+....+.+..+.|+...|+..|..+-.-.
T Consensus 66 L~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 334455666666666666544433322 334455666666666666666666655433
No 338
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=1.1 Score=42.69 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=40.2
Q ss_pred hcccHHHHHHHHHHHhhc------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 262 KKKEFEKAIEHYSSALEL------------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 262 ~~~~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
....|++|...|.-+... .|.+...+..++.+...+|+.+-|.....+++-
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 345677777777776654 466678999999999999999999888888764
No 339
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=1.8 Score=39.61 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=93.2
Q ss_pred HhhcCCCcHHHHHHhhhHHHhcCC--hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CchHHHHHHHHHHhcCC
Q 009799 381 QEIFDPKIADEEREKGNEFFKQQK--YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG----AMPEGLKDADKCIELDP 454 (525)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p 454 (525)
++..+|+...+|+.+..++.+.+. +..=+.+.+++++.+|.+..+|...-.+..... ...+=+++..+++..++
T Consensus 101 ~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nf 180 (421)
T KOG0529|consen 101 ALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNF 180 (421)
T ss_pred HHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccc
Confidence 333899999999999999987664 678889999999999999888876655544432 24666788899999999
Q ss_pred CCHHHHHHHHHHHHH------hcC------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009799 455 TFSKGYTRKGAIQFF------LKE------YDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (525)
Q Consensus 455 ~~~~~~~~la~~~~~------~g~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 503 (525)
.+..+|.....++.. .|+ ...-++.-..|+-.+|+++.+|......+.+
T Consensus 181 SNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 181 SNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred hhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 999999988877763 232 3345566677777899999988875555544
No 340
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.93 Score=41.28 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----CHHHHH
Q 009799 404 KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA--MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK----EYDKAL 477 (525)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~ 477 (525)
-.++-+.+...+++.+|++..+|+.+.+++.+.+. +..=+..++++++.+|.+..+|...-.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 45677788899999999999999999999998775 578899999999999999888876666554432 356778
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009799 478 ETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (525)
Q Consensus 478 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 507 (525)
++..+++.-++.|..+|.....++..+-..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~ 199 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPK 199 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccc
Confidence 899999999999999999999988866543
No 341
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.07 E-value=0.2 Score=45.31 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=81.3
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCCC-------------C-----HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNPK-------------D-----PRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~~-------------~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (525)
.-|..++++++|..|..-|..++++..+ + ..+-..+..||.++++.+-|+...-+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 3456678888888888888888876322 1 123456889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHH
Q 009799 456 FSKGYTRKGAIQFFLKEYDKALETYQEGLK---HDPQNQELLDGVRRCVQ 502 (525)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~ 502 (525)
++.-+...|.++..+.+|.+|...+--+.- ++..+..-...+...|.
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 999999999999999999999887665533 34433333333444443
No 342
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.19 Score=43.13 Aligned_cols=72 Identities=21% Similarity=0.142 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHH
Q 009799 425 TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (525)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 496 (525)
...++=..+...++++.|..+.++.+.++|+++.-+...|.+|.++|.+.-|++.++..++..|+++.+-..
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 344555667778888888888888888888888888888888888888888888888888888887765443
No 343
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.94 E-value=0.053 Score=31.58 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
.++.++|.+|..+|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677788888888888888888877764
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.83 E-value=0.046 Score=31.87 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (525)
..+..+|..+...|++++|+.++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4445555555555555555555555544
No 345
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.62 E-value=7 Score=41.08 Aligned_cols=90 Identities=21% Similarity=0.152 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccc
Q 009799 265 EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKD 344 (525)
Q Consensus 265 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (525)
.+++|+..|++.. -.|.-|--+...|.+|.++|++++-++++.-+++..|.++......-.+.+++-.+....
T Consensus 534 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 606 (932)
T PRK13184 534 DFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH------ 606 (932)
T ss_pred HHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH------
Confidence 5788888888754 456777888899999999999999999999999999998776655555555555544433
Q ss_pred hHHHHHHHHHHHhcCCC
Q 009799 345 YEPAIETFQKALTEHRN 361 (525)
Q Consensus 345 ~~~A~~~~~~~~~~~~~ 361 (525)
-..|....--++...|.
T Consensus 607 ~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 607 RREALVFMLLALWIAPE 623 (932)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 33444444445554444
No 346
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.21 Score=42.81 Aligned_cols=77 Identities=19% Similarity=0.104 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhH
Q 009799 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (525)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (525)
....++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|++.++..++..|+++.+-.....+
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34445566788889999999999999999999999999999999999999999999999999999998765544433
No 347
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.51 E-value=0.49 Score=49.64 Aligned_cols=97 Identities=18% Similarity=0.301 Sum_probs=70.4
Q ss_pred chHHHHHHHHHHhcCCHHHHHH------HHH-HHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccC--------
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVR------HFT-EAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELK-------- 66 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 66 (525)
++...+.|......|.+.+|.+ .+. ..-...|.....+..++..+..+|++++|+....++.-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 4556778888888888888887 554 3334577788899999999999999999999888776543
Q ss_pred CCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 009799 67 PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (525)
Q Consensus 67 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 98 (525)
|+....+..++......++...|...+.++..
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 44455666777666666666666666665543
No 348
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.42 E-value=0.48 Score=49.68 Aligned_cols=65 Identities=25% Similarity=0.198 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhcccHHHHHH------HHHH-HhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIE------HYSS-ALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER 313 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~------~~~~-~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 313 (525)
.+.-....|......|.+.+|.+ .+.. .-.+.|.....+..++.++...|++++|+..-.++.-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii 1002 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACII 1002 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceee
Confidence 33444555666777777777766 4442 22346777788888888888888888888877776543
No 349
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.05 E-value=0.095 Score=29.63 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISL 31 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 31 (525)
|+.+..+|.+-+..++|++|+.-|++++.+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555555555555543
No 350
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=94.02 E-value=4.2 Score=36.15 Aligned_cols=189 Identities=14% Similarity=0.088 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccch
Q 009799 266 FEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDY 345 (525)
Q Consensus 266 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (525)
-++|+..-.-+..+-|..++++-.++.+.+...+...=...=-..+-+...+ ..+...+. .
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQD--------r~lW~r~l-----------I 272 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQD--------RSLWDRAL-----------I 272 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccc--------hhhhhHHH-----------H
Confidence 3677777777778888888888777776655433211000000000011111 11112222 6
Q ss_pred HHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH-----hcCChhHHHHHHHHHHhcCC
Q 009799 346 EPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF-----KQQKYPEAIQHYTESLRRNP 420 (525)
Q Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~al~~~~ 420 (525)
+++...+.+++... .|.-....-.++-++. ..-+|..-..+|.-.....|
T Consensus 273 ~eg~all~rA~~~~-------------------------~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap 327 (415)
T COG4941 273 DEGLALLDRALASR-------------------------RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP 327 (415)
T ss_pred HHHHHHHHHHHHcC-------------------------CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC
Confidence 77777777777632 2222222223333332 23356666677776666666
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 009799 421 KDPRTYSNRAACYTKLGAMPEGLKDADKCIEL--DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVR 498 (525)
Q Consensus 421 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 498 (525)
+|.+-.|.+.......-...++...+..... -..+...+-..|.++.++|+.++|...|++++.+.++..+......
T Consensus 328 -SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 328 -SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred -CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 5666677777777766677788777766554 2344556778899999999999999999999999998877655444
Q ss_pred H
Q 009799 499 R 499 (525)
Q Consensus 499 ~ 499 (525)
+
T Consensus 407 r 407 (415)
T COG4941 407 R 407 (415)
T ss_pred H
Confidence 3
No 351
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.11 Score=45.99 Aligned_cols=114 Identities=21% Similarity=0.287 Sum_probs=94.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCC-----------c--------hhHHHHHHHHHHhhcccHHHHHHHHHHhhcc
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSP-----------D--------NHVLYSNRSAAHASLHNYADALADAKKTVEL 65 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 65 (525)
....|...+..++|+.|..-|.+++..-. + -.....+++.+-+..+.+..|+.....++..
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 34567788999999999999988875311 1 1245567889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHh
Q 009799 66 KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (525)
Q Consensus 66 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (525)
++....+++.++..+....++++|++.++.+....|++......+...-....
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999887766665544443
No 352
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.13 Score=45.40 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009799 424 RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (525)
Q Consensus 424 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 503 (525)
....+++.+-.+.+.+..|+.....++..++....+++.++..+....++++|++.++.+....|++..+...+..+-..
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 45567889999999999999999888999999999999999999999999999999999999999999988888877766
Q ss_pred hhhh
Q 009799 504 INKA 507 (525)
Q Consensus 504 ~~~~ 507 (525)
..+.
T Consensus 356 ~~~~ 359 (372)
T KOG0546|consen 356 KKQY 359 (372)
T ss_pred HHHH
Confidence 6554
No 353
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.91 E-value=0.21 Score=27.92 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHH--HHHHhccCCC
Q 009799 458 KGYTRKGAIQFFLKEYDKALET--YQEGLKHDPQ 489 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~--~~~a~~~~p~ 489 (525)
+.++.+|-.+..+|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455666666666666666666 3355555554
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.84 E-value=3.7 Score=39.20 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=85.8
Q ss_pred HHHhcccHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHH
Q 009799 259 AAYKKKEFEKAIEHYSSALELDDED-ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK 337 (525)
Q Consensus 259 ~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (525)
.....++++++....... ++-|.- ......++..+.+.|-++.|+...+. | ... -+....+|+
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~r---FeLAl~lg~---- 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHR---FELALQLGN---- 333 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHH---HHHHHHCT-----
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHH---hHHHHhcCC----
Confidence 344578888877766521 112222 33455666677777877777655422 1 111 222333333
Q ss_pred hhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHh
Q 009799 338 MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (525)
Q Consensus 338 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 417 (525)
.+.|.+.. ...+++..|..+|.....+|+++-|.++|+++-
T Consensus 334 -------L~~A~~~a-------------------------------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~- 374 (443)
T PF04053_consen 334 -------LDIALEIA-------------------------------KELDDPEKWKQLGDEALRQGNIELAEECYQKAK- 374 (443)
T ss_dssp -------HHHHHHHC-------------------------------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred -------HHHHHHHH-------------------------------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-
Confidence 55554432 234567899999999999999999999998753
Q ss_pred cCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 418 RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 418 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
-+..+..+|...|+.+.=.+..+.+...... ...-.+++.+|+.++.++.+.++
T Consensus 375 -------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 375 -------DFSGLLLLYSSTGDREKLSKLAKIAEERGDI-----NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -------CccccHHHHHHhCCHHHHHHHHHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 2445667777788766555555555443221 11223455667777777766654
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.73 E-value=1.2 Score=29.94 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHH---HHHHHHhcCHHHHHHHHHHHHHc
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNR---AAVYLEMGKYEECIKDCDKAVER 313 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l---a~~~~~~~~~~~A~~~~~~~l~~ 313 (525)
.+......|.-++...+..+|+..++++++..++.+..+..+ ..+|...|+|.+.+.+-..=+.+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888999999999999999999988877655544 56788899999888876665544
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.72 E-value=6.1 Score=37.02 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=72.4
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHH
Q 009799 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (525)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 90 (525)
..+..|+...|-+-...++...|.+|......+.+...+|.|+.|...+.-+-..-..-..+...+-+....+|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45678999999999999999999999999999999999999999998886655544444455555666677778888887
Q ss_pred HHHHHhhccCCCcHH
Q 009799 91 NSYKKGLDIDPNNEA 105 (525)
Q Consensus 91 ~~~~~al~~~p~~~~ 105 (525)
..-.-.+.-.-++++
T Consensus 378 s~a~~~l~~eie~~e 392 (831)
T PRK15180 378 STAEMMLSNEIEDEE 392 (831)
T ss_pred HHHHHHhccccCChh
Confidence 777766655444444
No 357
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.68 E-value=0.18 Score=28.17 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHH--HHhccCCc
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFT--EAISLSPD 34 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~--~al~~~p~ 34 (525)
+.++..|-.++.+|+|++|+..|+ -+...+|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 345666666666677777766633 55544443
No 358
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.67 E-value=1.9 Score=37.80 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER 313 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 313 (525)
....++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-..
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999999999999999999999999999988763
No 359
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.62 E-value=4.1 Score=39.64 Aligned_cols=57 Identities=25% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhc--------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALEL--------------DDEDISYLTNRAAVYLEMGKYEECIKDCDKA 310 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 310 (525)
|..++......=+++-|.+.|.++-.. ....| --..+|.++...|++.+|.+.|.+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 455566666666677777777665322 11112 2245778888889999999888764
No 360
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.60 E-value=2.7 Score=40.17 Aligned_cols=142 Identities=10% Similarity=0.072 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc---------------------CCCCHH---HHHHHHHHHHHhcCHHH
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL---------------------DDEDIS---YLTNRAAVYLEMGKYEE 302 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------------------~p~~~~---~~~~la~~~~~~~~~~~ 302 (525)
|.....+..++.+...+|+.+-|....++++=. .|.|-. +++..-..+.+.|-+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 345666777788888888887777777766511 233322 23333445567899999
Q ss_pred HHHHHHHHHHcccc-ChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHH
Q 009799 303 CIKDCDKAVERGRE-LRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQ 381 (525)
Q Consensus 303 A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 381 (525)
|.++++-++.++|. ++-....+.+.|..++.-|.-+-+ +.++.+..++.-.
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~----~~~~~e~~n~l~~------------------------ 412 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIE----LSNEPENMNKLSQ------------------------ 412 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHH----HHHHHHhhccHhh------------------------
Confidence 99999999999998 665555556666666654444433 3333333332222
Q ss_pred hhcCCCcHHHHHHhhhHHHhcCC---hhHHHHHHHHHHhcCC
Q 009799 382 EIFDPKIADEEREKGNEFFKQQK---YPEAIQHYTESLRRNP 420 (525)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~ 420 (525)
-|+.+ .-..+|..|..... -+.|...+.+|+.+.|
T Consensus 413 ---~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 413 ---LPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ---cCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 23222 22334444554444 5667777788877766
No 361
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.59 E-value=4.7 Score=35.37 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=69.7
Q ss_pred CCCcHHHHHHhhhHHHhcCChhHHHHHHHHH----------------HhcCCCCHHHHHHHHHH-HHHcCCchHHHHHHH
Q 009799 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTES----------------LRRNPKDPRTYSNRAAC-YTKLGAMPEGLKDAD 447 (525)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----------------l~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~ 447 (525)
.-.++..+..+|..+.+.|++.+|..+|-.. .+-.|.....+...|.+ |...++...|...+.
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4467899999999999999999888776221 13356667777666665 777899999988776
Q ss_pred HHHhc----CCC-----------CHHHHHH-HHHHHHHhcC---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 448 KCIEL----DPT-----------FSKGYTR-KGAIQFFLKE---YDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 448 ~al~~----~p~-----------~~~~~~~-la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
.-.+. +|+ .|...+. +-..-...++ +..=.+.|+..++.+|........++..+..+..
T Consensus 166 ~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 166 TFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 66554 332 2321111 1111122333 3333445555566778888899999999888764
No 362
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.56 E-value=0.12 Score=26.43 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 009799 459 GYTRKGAIQFFLKEYDKALETYQ 481 (525)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~ 481 (525)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555666666666666655543
No 363
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.28 E-value=0.16 Score=28.73 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677777777778888888888777765
No 364
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.27 E-value=0.49 Score=33.83 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=24.5
Q ss_pred HHhcCCHHHHHHHHHHHhccCCc---------hhHHHHHHHHHHhhcccHHHHHHHHHHhhcc
Q 009799 12 AFSSGDYEAAVRHFTEAISLSPD---------NHVLYSNRSAAHASLHNYADALADAKKTVEL 65 (525)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 65 (525)
..+.|+|..|++.+.+....... ...++.++|.++...|++++|+..+++++.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34555566555555554443211 1233344444444444444444444444443
No 365
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=5.5 Score=36.44 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=19.6
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK 421 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 421 (525)
+...+.+|.+..-+++|..|.+++-.|+...|.
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 344455566666666666666666666666664
No 366
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.07 E-value=0.15 Score=25.98 Aligned_cols=13 Identities=38% Similarity=0.158 Sum_probs=4.7
Q ss_pred HHHHhhhhhHHHH
Q 009799 77 GAAHLGLQDYIEA 89 (525)
Q Consensus 77 a~~~~~~g~~~~A 89 (525)
|.++...|++++|
T Consensus 8 a~~~~~~G~~~eA 20 (26)
T PF07721_consen 8 ARALLAQGDPDEA 20 (26)
T ss_pred HHHHHHcCCHHHH
Confidence 3333333333333
No 367
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.96 E-value=0.43 Score=41.59 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhcc
Q 009799 36 HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (525)
Q Consensus 36 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 99 (525)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3667788999999999999999999999999999999999999999999999999999987653
No 368
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.70 E-value=6.9 Score=34.73 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=37.5
Q ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Q 009799 256 AGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER 313 (525)
Q Consensus 256 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 313 (525)
+-....+..+...-++.-..+++++|....++..++.- ..--..+|.+.++++++.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHH
Confidence 33445566677777777788888888888777777643 223456677777777764
No 369
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.63 E-value=9.5 Score=36.21 Aligned_cols=94 Identities=19% Similarity=-0.003 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHH
Q 009799 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTR 330 (525)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 330 (525)
..+..+-.++-.+-.+.-......+++... .+-.+++.++.+|... ..++-...+++..+.+-++......++..|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-- 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-- 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH--
Confidence 334444445555555555666667766654 4567788888888887 566677778888777666544333333333
Q ss_pred hhhhHHHhhhcccchHHHHHHHHHHHhc
Q 009799 331 KGTALVKMAKCSKDYEPAIETFQKALTE 358 (525)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (525)
.. .+ .+.+..+|.+++..
T Consensus 143 -----Ek-ik----~sk~a~~f~Ka~yr 160 (711)
T COG1747 143 -----EK-IK----KSKAAEFFGKALYR 160 (711)
T ss_pred -----HH-hc----hhhHHHHHHHHHHH
Confidence 22 33 78888888888763
No 370
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.55 E-value=0.61 Score=46.09 Aligned_cols=115 Identities=26% Similarity=0.332 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch----hHHHHHHHHHHhh--cccHHHHHHHHHHhhccCCCCHHHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN----HVLYSNRSAAHAS--LHNYADALADAKKTVELKPDWSKGYSRL 76 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l 76 (525)
-.+...|+.+++.++|..|.--|..++.+-|.+ .....+.+.|++. .|++..++....-++...|....+++..
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 356778999999999999988898888888743 3556667777654 5799999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHH
Q 009799 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (525)
Q Consensus 77 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (525)
+.+|...+.++-|++...-....+|.+..+......+....
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999998888899999977665444444433
No 371
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.19 E-value=13 Score=36.55 Aligned_cols=80 Identities=10% Similarity=0.090 Sum_probs=46.5
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccC--------------CCCHHHHHHH
Q 009799 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELK--------------PDWSKGYSRL 76 (525)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l 76 (525)
+++..|.+++|...---.+ -..-|..+|...+..=+++-|.+.|.++-.+. ...| --..+
T Consensus 565 q~Ieag~f~ea~~iaclgV-----v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLl 638 (1081)
T KOG1538|consen 565 QYIERGLFKEAYQIACLGV-----TDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLL 638 (1081)
T ss_pred hhhhccchhhhhcccccce-----ecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHH
Confidence 4555666665543211111 11335566666666667777777776654331 1112 23567
Q ss_pred HHHHhhhhhHHHHHHHHHHh
Q 009799 77 GAAHLGLQDYIEAVNSYKKG 96 (525)
Q Consensus 77 a~~~~~~g~~~~A~~~~~~a 96 (525)
|.++.-.|++.+|...|.+.
T Consensus 639 A~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHHc
Confidence 88888889999999888764
No 372
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.06 E-value=0.72 Score=41.17 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009799 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF 469 (525)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 469 (525)
|..+|.+|+.+.|++...|+.+|.++...|+.=.|+-+|-+++....-.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777766666665543345666666666655
No 373
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=91.90 E-value=0.43 Score=36.83 Aligned_cols=50 Identities=18% Similarity=-0.015 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh
Q 009799 36 HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (525)
Q Consensus 36 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 85 (525)
.+.....+...+..|++.-|.+..+.++..+|++..+...++.++..+|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555554
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.76 E-value=1.2 Score=31.72 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=47.0
Q ss_pred HHHhcCHHHHHHHHHHHHHccccChhhH--HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC
Q 009799 294 YLEMGKYEECIKDCDKAVERGRELRSDF--KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (525)
Q Consensus 294 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (525)
..+.|++..|++.+.+.++......... .....++..++.++...|. +++|+..+++++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~----~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH----YEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHH
Confidence 4577899999888888887655433222 2346677888888899988 999999999999843
No 375
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.49 E-value=17 Score=36.77 Aligned_cols=63 Identities=10% Similarity=-0.047 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHh
Q 009799 50 HNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLAD 112 (525)
Q Consensus 50 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 112 (525)
+.-+.=+..++.-+.+++.+...+..|..++.+.|++++-...-..+..+.|.++..|.....
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~ 155 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLK 155 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 344455666666677777777777788888888888877777777777777777776665443
No 376
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.48 E-value=7 Score=32.22 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCHHHHH
Q 009799 405 YPEAIQHYTESLRRN-PKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT----FSKGYTRKGAIQFFLKEYDKAL 477 (525)
Q Consensus 405 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 477 (525)
-+.|...|-++-... -+++...+.+|..|. ..+.++|+..+-+++++.+. +++++..|+.++.++|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 356666665543221 246788888888777 56688899999999887433 5788889999999999988875
No 377
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=13 Score=34.28 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhc-CCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALEL-DDED--------ISYLTNRAAVYLEMGKYEECIKDCDKAV 311 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~l 311 (525)
++.....++.++++++|..+-+..+.. .-.+ ...|+.+..+|...|+...-...+...+
T Consensus 129 ~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~l 196 (493)
T KOG2581|consen 129 YLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALL 196 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 333444455678899988887776542 1111 3456666666666666555444444443
No 378
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.46 E-value=1.1 Score=40.11 Aligned_cols=62 Identities=16% Similarity=0.057 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009799 374 AKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK 435 (525)
Q Consensus 374 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 435 (525)
|..+|.++....|.....++.+|.+....|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999886655567888888888877
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.34 E-value=1.1 Score=38.86 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 009799 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGL 97 (525)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 97 (525)
..+...+..|...|.+.+|++..++++.++|-+...+..+-.++...|+--.|...|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4556677888999999999999999999999999999999999999999888888887764
No 380
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.11 E-value=23 Score=35.91 Aligned_cols=183 Identities=7% Similarity=-0.045 Sum_probs=99.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh-------
Q 009799 291 AAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD------- 363 (525)
Q Consensus 291 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------- 363 (525)
+..-....+.+.|...+.+.....+-..... ..+...++.-...... ..++...+..+.....+..
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~---~~~~~~lA~~~a~~~~----~~~a~~w~~~~~~~~~~~~~~e~r~r 320 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQR---QELRDIVAWRLMGNDV----TDEQAKWRDDVIMRSQSTSLLERRVR 320 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHhccC----CHHHHHHHHhcccccCCcHHHHHHHH
Confidence 3334455667777777776544333222211 1222222222222111 3445555555443322222
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---------------------
Q 009799 364 TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD--------------------- 422 (525)
Q Consensus 364 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------------- 422 (525)
.....++++.....+..+...........+-+|..+...|+.++|...|+++... .+.
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKIDKAP 399 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCCCCC
Confidence 1224456666655555554444456778888888888899999999998887431 100
Q ss_pred -H------HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 423 -P------RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 423 -~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
. ..-...+..+...|+...|...+..++.. .++.....++.+-...|.++.|+....++
T Consensus 400 ~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 400 KPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred chhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0 11233455566667777777777666654 23455566666666777777776655443
No 381
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.98 E-value=24 Score=35.86 Aligned_cols=436 Identities=11% Similarity=0.006 Sum_probs=215.3
Q ss_pred CCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh---hhhhHHHHHHH
Q 009799 16 GDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL---GLQDYIEAVNS 92 (525)
Q Consensus 16 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 92 (525)
|.-++=+..++.-+.+++.+...+..|-..+...|++++-...-.++.++.|.++..|.....-.. ..++-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344555777777788888888999999999999999999888888888888888887766543332 23677888899
Q ss_pred HHHhhccCCCcHHHHhhHHhHHHHHhhcccC-CC-CCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhC
Q 009799 93 YKKGLDIDPNNEALKSGLADAKAAASASFRS-RS-PPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRN 170 (525)
Q Consensus 93 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (525)
|++++. +-.++..|...+......+..... .. ......+...+....... ....++......+
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~-----------t~G~~~we~~~E~--- 237 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHI-----------TEGAAIWEMYREF--- 237 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhh-----------cccHHHHHHHHHH---
Confidence 999986 445566666666655554432000 00 000000000000000000 0000000000000
Q ss_pred CCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCc--hhhccCCCCCCCCCChhhhHHHHHHHHhHH
Q 009799 171 PNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETS--KEETRKPESEPEPEPMELTEEEKEAKERKE 248 (525)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (525)
...|+......+.+... ......+ -+......++......+ ....+.+.....................+.
T Consensus 238 ---e~~~l~n~~~~qv~a~~-~~el~~~---~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~ 310 (881)
T KOG0128|consen 238 ---EVTYLCNVEQRQVIALF-VRELKQP---LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPI 310 (881)
T ss_pred ---HHHHHHhHHHHHHHHHH-HHHHhcc---chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 00011111000000000 0000000 00000000000000000 000001110000001111222334445556
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYL-EMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
.-..|...-......|.+..-...+++++...+.+...|...+...- .++-.+.+...+.+++...|-....+ .++
T Consensus 311 ~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~---~ra 387 (881)
T KOG0128|consen 311 KDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLW---KRA 387 (881)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHH---HHH
Confidence 66667777777788888888888889988888888888877765432 23444455555555555554432222 111
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHh------------------cCCChhHHHHhchHHHHHHHHHHHhhc-CCCc
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALT------------------EHRNPDTLKKLNEAEKAKKELEQQEIF-DPKI 388 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 388 (525)
++.+. +.+.....-...+.+.+. +....+.-.....+..|...+...... -...
T Consensus 388 llAle-------R~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~ 460 (881)
T KOG0128|consen 388 LLALE-------RNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTR 460 (881)
T ss_pred HHHHH-------hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 11111 100011111111221111 111111222234555666666665544 2223
Q ss_pred HHHHHHhhhHHH-hcCChhHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHHhc--CCCC-HHHHHHH
Q 009799 389 ADEEREKGNEFF-KQQKYPEAIQHYTESLRRNPKDPR-TYSNRAACYTKLGAMPEGLKDADKCIEL--DPTF-SKGYTRK 463 (525)
Q Consensus 389 ~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~-~~~~~~l 463 (525)
...+-..|.+.. ..++.+.|..+++..+.....+.. .|.....+-...|+...+..++.++... +|++ ..++...
T Consensus 461 ~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~ 540 (881)
T KOG0128|consen 461 TEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFF 540 (881)
T ss_pred HHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHH
Confidence 344445555544 457788898888887776665555 7888888888889999999988888764 3332 2344444
Q ss_pred HHHHHHhcCHHHHHHHHHHH
Q 009799 464 GAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a 483 (525)
-......|.++....+-.+.
T Consensus 541 ~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 541 RRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred HHHHhccccHHHHhhhHHhh
Confidence 44455566666655544443
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.97 E-value=1.1 Score=38.87 Aligned_cols=49 Identities=24% Similarity=0.256 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhh
Q 009799 71 KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (525)
Q Consensus 71 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (525)
..+...+..|...|.+.+|++..++++.++|-+...+..+..++...|+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 3455567777888888888888888888888888888888887777776
No 383
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.86 E-value=1.8 Score=25.50 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh
Q 009799 461 TRKGAIQFFLKEYDKALETYQEGL 484 (525)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~ 484 (525)
+.+|..|..+|+.+.|.+.++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555
No 384
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.05 E-value=1.6 Score=29.27 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (525)
|-.+..+|..+-..|++.+|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34566677777777777777777666543
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.88 E-value=0.93 Score=24.22 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHhccCCchhHHHHHHH
Q 009799 17 DYEAAVRHFTEAISLSPDNHVLYSNRS 43 (525)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~~~~~la 43 (525)
+++.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554443
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.70 E-value=15 Score=31.73 Aligned_cols=47 Identities=30% Similarity=0.391 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhh-----cCCCCH---HHHHHHHHHHH-HhcCHHHHHHHHHHHHHc
Q 009799 267 EKAIEHYSSALE-----LDDEDI---SYLTNRAAVYL-EMGKYEECIKDCDKAVER 313 (525)
Q Consensus 267 ~~A~~~~~~~l~-----~~p~~~---~~~~~la~~~~-~~~~~~~A~~~~~~~l~~ 313 (525)
+.|...|++|+. +.|.+| ....+.+..|+ -.|+.++|+...++++..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 556666666654 456665 33445555554 489999999999888763
No 387
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.70 E-value=2.3 Score=32.90 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009799 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (525)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (525)
.+.....+.-.+..|++.-|.+....++..+|+|.++....+.++.+++...+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 44555666666777777788888888888888888888888888777776544
No 388
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=88.43 E-value=24 Score=33.71 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=54.0
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhc--C--CC---CHHHHHHHHHHH--HHcCCchHHHHHHHHHHhcCCCCHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRR--N--PK---DPRTYSNRAACY--TKLGAMPEGLKDADKCIELDPTFSK 458 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~--~~---~~~~~~~la~~~--~~~~~~~~A~~~~~~al~~~p~~~~ 458 (525)
-..+....+.++...|.+.+|...+-+.... . .. .+.++-..|.|+ ........-..-++ ..+-
T Consensus 299 a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~R-------K~af 371 (414)
T PF12739_consen 299 ALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFR-------KYAF 371 (414)
T ss_pred hHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhH-------HHHH
Confidence 3455666777788888887777766665544 2 22 334455566666 21111000000000 0122
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Q 009799 459 GYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (525)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 488 (525)
-+..-|.-|.+.|....|..+|.+++....
T Consensus 372 ~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 372 HMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 234446778889999999999999988755
No 389
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.35 E-value=1.3 Score=23.61 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=16.6
Q ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009799 471 KEYDKALETYQEGLKHDPQNQELLDGVRR 499 (525)
Q Consensus 471 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 499 (525)
|+.+.|...|++++...|.++.+|..+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34555666666666666666665555443
No 390
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.30 E-value=10 Score=29.42 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=38.4
Q ss_pred HHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 009799 259 AAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCD 308 (525)
Q Consensus 259 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 308 (525)
.+...+.+...+.+++.++..++.++..+..+..+|... +..+.+..+.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 344567899999999999999888888999999988765 4455556655
No 391
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.22 E-value=17 Score=31.74 Aligned_cols=78 Identities=17% Similarity=0.026 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCH
Q 009799 406 PEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPT------FSKGYTRKGAIQFFLKEY 473 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~ 473 (525)
...++.+.+++...... ..+...+|..|+..|++++|..+|+.+...... ...+...+..|+...|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 34455666665443321 244567888888888888888888887654322 234566677777888887
Q ss_pred HHHHHHHHHH
Q 009799 474 DKALETYQEG 483 (525)
Q Consensus 474 ~~A~~~~~~a 483 (525)
+..+.+.-+.
T Consensus 235 ~~~l~~~leL 244 (247)
T PF11817_consen 235 EDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHH
Confidence 7776655443
No 392
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.09 E-value=12 Score=30.10 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=78.5
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHh------------chHHHHHHHHHHHhhcCCCcHHHHH
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKL------------NEAEKAKKELEQQEIFDPKIADEER 393 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~ 393 (525)
+....+|..+..+.+ ++++|...|+.--..+..+....+. +++..|++.+..+.. .+.+.+..
T Consensus 35 e~C~lLgdYlEgi~k---nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~ 109 (248)
T KOG4014|consen 35 ESCQLLGDYLEGIQK---NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACR 109 (248)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHh
Confidence 444455554433332 4888888887776655444433332 244555666655543 34555555
Q ss_pred HhhhHHHhc-----CC--hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009799 394 EKGNEFFKQ-----QK--YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI 466 (525)
Q Consensus 394 ~l~~~~~~~-----~~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 466 (525)
.+|.++... ++ ..+|..++.++-.+. +..+-++|...|+.-. ++ +....|..... ...+..
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p-~~~~~~ 177 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKP-LDRAEL 177 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCC-cchhhh
Confidence 555555432 22 456666666665543 3344444444443321 11 11112210000 112333
Q ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009799 467 QFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (525)
Q Consensus 467 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 503 (525)
+....+.+.|.++--+|-+++ ++.+-.++.+.+..
T Consensus 178 ~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMykl 212 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD--IPQACANVSRMYKL 212 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHc
Confidence 344466777777777776653 45566666665543
No 393
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.04 E-value=14 Score=30.57 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhh-cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCchHHHH
Q 009799 372 EKAKKELEQQEI-FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK----DPRTYSNRAACYTKLGAMPEGLK 444 (525)
Q Consensus 372 ~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~ 444 (525)
+.|...|-++-. -.-++++..+.+|..|. ..+.++|+..+.+++++.+. ++.++..|+.++.++|+++.|--
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 344444433322 22367888899998777 67899999999999988654 58999999999999999998853
No 394
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=17 Score=31.66 Aligned_cols=181 Identities=13% Similarity=0.127 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHH
Q 009799 286 YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTL 365 (525)
Q Consensus 286 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 365 (525)
.-..+..+++..|+|.+|+......+...... +....+..++..-..+|..... ..++...+..+-......
T Consensus 127 Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~-DDK~~Li~vhllESKvyh~irn----v~KskaSLTaArt~Ans~--- 198 (421)
T COG5159 127 LECKLIYLLYKTGKYSDALALINPLLHELKKY-DDKINLITVHLLESKVYHEIRN----VSKSKASLTAARTLANSA--- 198 (421)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh-cCccceeehhhhhHHHHHHHHh----hhhhhhHHHHHHHHhhcc---
Confidence 34567788899999999999888776533221 1122234556666666666666 666665555443321110
Q ss_pred HHhchHHHHHHHHHHHhhcCCCcH--HHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC---CHHH-----HHHHHHHHHH
Q 009799 366 KKLNEAEKAKKELEQQEIFDPKIA--DEEREKGNEFFKQQKYPEAIQHYTESLRRNPK---DPRT-----YSNRAACYTK 435 (525)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~-----~~~la~~~~~ 435 (525)
..|... ..-..-|.......+|..|-.+|-++++-... +..+ |..+..+..
T Consensus 199 ------------------YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMl- 259 (421)
T COG5159 199 ------------------YCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIML- 259 (421)
T ss_pred ------------------CCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH-
Confidence 123222 22334466677788899999999988875432 2222 233333333
Q ss_pred cCCchHHHHHH--HHHHh-cCCCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHhccCCCCHHHH
Q 009799 436 LGAMPEGLKDA--DKCIE-LDPTFSKGYTRKGAIQFF--LKEYDKALETYQEGLKHDPQNQELL 494 (525)
Q Consensus 436 ~~~~~~A~~~~--~~al~-~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~ 494 (525)
+..++....+ ...++ .+....++....+..+-. +.+|..|+..|..-+.-+|--..-.
T Consensus 260 -N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl 322 (421)
T COG5159 260 -NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHL 322 (421)
T ss_pred -hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHH
Confidence 3333332222 22333 334456677777777643 5678888888887776665433333
No 395
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.91 E-value=24 Score=33.14 Aligned_cols=235 Identities=10% Similarity=-0.007 Sum_probs=140.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
.+...+-.+..|+.....+...++-+.|+....+++...|. ....++.+|...++-+....+|+++...-.
T Consensus 294 ~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~------ 364 (660)
T COG5107 294 ILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK------ 364 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH------
Confidence 34455667788888888888999999999998888877766 667788888888887777777777654110
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC-----hhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhh
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN-----PDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKG 396 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 396 (525)
+-+ ..+..-...+. .++++..-+++-+-.....- -....+..-.+.|...|-++-+..-....++..-|
T Consensus 365 ----r~y-s~~~s~~~s~~-D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A 438 (660)
T COG5107 365 ----RKY-SMGESESASKV-DNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCA 438 (660)
T ss_pred ----HHH-hhhhhhhhccc-cCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHH
Confidence 000 00000000000 00011000000000000000 00111222233444444444333322233333323
Q ss_pred h-HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCH
Q 009799 397 N-EFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF--SKGYTRKGAIQFFLKEY 473 (525)
Q Consensus 397 ~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~ 473 (525)
. -+...|++..|-.+|+-.+...|+++..-...-..+...++-..|...|++++..-... ...|-.+-..-..-|+.
T Consensus 439 ~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 439 FIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcch
Confidence 2 25568999999999999999999888777777777788999999999999888653332 34555555555667888
Q ss_pred HHHHHHHHHHhccCCCCH
Q 009799 474 DKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 474 ~~A~~~~~~a~~~~p~~~ 491 (525)
..+...=++...+.|+..
T Consensus 519 N~v~sLe~rf~e~~pQen 536 (660)
T COG5107 519 NNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHhHHHHHHHHcCcHh
Confidence 888888888888888753
No 396
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.84 E-value=26 Score=33.59 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=22.6
Q ss_pred HHHHhcCCHHHHHHHHH--HHhccCCchhHHHHHHHHHHhhcccHHHHHHH
Q 009799 10 NAAFSSGDYEAAVRHFT--EAISLSPDNHVLYSNRSAAHASLHNYADALAD 58 (525)
Q Consensus 10 ~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 58 (525)
......|+++++..+.. +.+..-| ..-....+..+.+.|-++.|+..
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhh
Confidence 34566788888777665 2232222 23455666677777777777664
No 397
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=87.43 E-value=21 Score=32.05 Aligned_cols=187 Identities=17% Similarity=0.214 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC--------------hhHH
Q 009799 300 YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--------------PDTL 365 (525)
Q Consensus 300 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~ 365 (525)
...-+..+..+++........+ ..-..-.++..+|...++ |.+|+......+..-.. +..+
T Consensus 104 ~~~~i~l~~~cIeWA~~ekRtF-LRq~Learli~Ly~d~~~----YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y 178 (411)
T KOG1463|consen 104 TGDQIELCTECIEWAKREKRTF-LRQSLEARLIRLYNDTKR----YTEALALINDLLRELKKLDDKILLVEVHLLESKAY 178 (411)
T ss_pred cchHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHH
Confidence 3344455555554332221111 112333445556666666 77777766655542211 2244
Q ss_pred HHhchHHHHHHHHHHHhh------cCCCc-HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC---CH---HHHHHHHHH
Q 009799 366 KKLNEAEKAKKELEQQEI------FDPKI-ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK---DP---RTYSNRAAC 432 (525)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~---~~~~~la~~ 432 (525)
..+.+..+|...+..+-. ..|.. ...-..-|..+....+|..|..+|-++++-... +. ..+-.+-.|
T Consensus 179 ~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLc 258 (411)
T KOG1463|consen 179 HALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLC 258 (411)
T ss_pred HHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHH
Confidence 455555555555443332 12221 222334466777778999999999999875431 22 233344444
Q ss_pred HHHcCCchHHHHHH--HHHHhcCCCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHhccCCCCH
Q 009799 433 YTKLGAMPEGLKDA--DKCIELDPTFSKGYTRKGAIQFF--LKEYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 433 ~~~~~~~~~A~~~~--~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~p~~~ 491 (525)
-..++..++.-..+ ..+++....+.++....+..+.+ +.+|+.|+..|+.=+.-+|--.
T Consensus 259 KIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr 321 (411)
T KOG1463|consen 259 KIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVR 321 (411)
T ss_pred HHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHH
Confidence 55566666554444 45677777778898889988865 6789999999998888776533
No 398
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.84 E-value=34 Score=34.95 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=66.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHh---
Q 009799 292 AVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKL--- 368 (525)
Q Consensus 292 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--- 368 (525)
.+..+...|+-|+.+.+.- ......+..++...|..++..|+ +++|...|-+.+..-..+.+..+.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-------~~d~d~~~~i~~kYgd~Ly~Kgd----f~~A~~qYI~tI~~le~s~Vi~kfLda 410 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-------HLDEDTLAEIHRKYGDYLYGKGD----FDEATDQYIETIGFLEPSEVIKKFLDA 410 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHcccCChHHHHHHhcCH
Confidence 4455666677776655432 11222236778888888888888 999999999999876665544332
Q ss_pred chHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHH
Q 009799 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAI 409 (525)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 409 (525)
.+..+-..+++...+..-.+..--..+-.+|.+.++.++-.
T Consensus 411 q~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHH
Confidence 33344444555555554444444555666777777655433
No 399
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.39 E-value=22 Score=31.24 Aligned_cols=211 Identities=13% Similarity=0.026 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHccccChhh
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL-----DDEDISYLTNRAAVYLEMGKYE-ECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~ 320 (525)
..-.+.++.-+..+.+.|++..|.+...-.++. .|.+......++.+....+.-+ +-.+..+++++.. .....
T Consensus 7 ~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~ 85 (260)
T PF04190_consen 7 DEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSY 85 (260)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-
T ss_pred HHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCC
Confidence 345566777788888889988887766555543 3445555567777776665332 4556666666654 21111
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhH-H
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNE-F 399 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~ 399 (525)
...-...+..+|..+.+.++ +.+|..+|-..-. +... ....-.........|...+.+...+.+ |
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~----~~~A~~Hfl~~~~----~~~~------~~~~ll~~~~~~~~~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGN----YYEAERHFLLGTD----PSAF------AYVMLLEEWSTKGYPSEADLFIARAVLQY 151 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-----HHHHHHHHHTS-H----HHHH------HHHHHHHHHHHHTSS--HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcc----HHHHHHHHHhcCC----hhHH------HHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 12226788888888888888 9988887743321 0000 000011222233567777777766654 5
Q ss_pred HhcCChhHHHHHHHHHHhc----CCC----------CHHHHHH--HHHHHHHcCC---chHHHHHHHHHHhcCCCCHHHH
Q 009799 400 FKQQKYPEAIQHYTESLRR----NPK----------DPRTYSN--RAACYTKLGA---MPEGLKDADKCIELDPTFSKGY 460 (525)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~----~~~----------~~~~~~~--la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~ 460 (525)
...++...|...+....+. +|+ +...++- +-..-+..++ +..-.+.|+..++.+|.....+
T Consensus 152 L~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L 231 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYL 231 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHH
Confidence 5678999888877666654 332 2122111 1122233333 2233344445555677777888
Q ss_pred HHHHHHHHHhcC
Q 009799 461 TRKGAIQFFLKE 472 (525)
Q Consensus 461 ~~la~~~~~~g~ 472 (525)
..+|..|+....
T Consensus 232 ~~IG~~yFgi~~ 243 (260)
T PF04190_consen 232 DKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHHH---S
T ss_pred HHHHHHHCCCCC
Confidence 889999887543
No 400
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.14 E-value=1.9 Score=25.39 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 288 TNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 288 ~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
+.+|..|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 401
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.03 E-value=5.6 Score=33.09 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcH
Q 009799 45 AHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104 (525)
Q Consensus 45 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 104 (525)
-+++.+...+|+...+.-++..|.+......+-.+++-.|+|++|...++-+-.+.|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345556666666666666666666666666666666666666666666666666666553
No 402
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.34 E-value=4.7 Score=40.29 Aligned_cols=110 Identities=25% Similarity=0.430 Sum_probs=81.4
Q ss_pred hhhHHHhcCChhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH--cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009799 395 KGNEFFKQQKYPEAIQHYTESLRRNPKD----PRTYSNRAACYTK--LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (525)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 468 (525)
-|+.++..+++..|.--|..++.+-|.+ .....+.+.++.. .|+|..++.-..-++...|....+++..+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3566777778888877777777777642 3455666666654 567888888888888888888888888888888
Q ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009799 469 FLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 469 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 504 (525)
..+..+-|++...-.....|.+..+.....++...+
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 888888888888888888888866655444443333
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.28 E-value=7.3 Score=32.45 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=57.6
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
...+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|+....
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 3456778999999999999999999999999999999999999999999999999999986543
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.21 E-value=2.1 Score=39.84 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=64.0
Q ss_pred HHHHhhhHHHhcCChhHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHH
Q 009799 391 EEREKGNEFFKQQKYPEAIQHYTESLRRN---------PKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (525)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (525)
+...+..++.-.|+|..|++.++.. +++ +-+..+++.+|-+|+.+++|.+|++.|..++-.-......+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~ 202 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYH 202 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4556778888999999999998753 222 224577899999999999999999999988753211111111
Q ss_pred HHHHHHH-HhcCHHHHHHHHHHHhccCCC
Q 009799 462 RKGAIQF-FLKEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 462 ~la~~~~-~~g~~~~A~~~~~~a~~~~p~ 489 (525)
....-+- -.+..++....+--++.+.|.
T Consensus 203 ~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 203 QRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred cccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 1111111 124456666666667777886
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.05 E-value=38 Score=31.85 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=16.5
Q ss_pred HHHHHhcccHHHHHHHHHHHhhc
Q 009799 257 GNAAYKKKEFEKAIEHYSSALEL 279 (525)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~l~~ 279 (525)
|.--...|+|+.|+..+=+++++
T Consensus 248 A~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 248 AERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 33344678899998888887764
No 406
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.03 E-value=3 Score=38.83 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhccC---------CCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 009799 37 VLYSNRSAAHASLHNYADALADAKKTVELK---------PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (525)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 98 (525)
-+..++.+++.-+|+|..|++.++-. +++ +-+...++..|-+|+.+++|.+|+..|...+-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999998753 332 23456789999999999999999999998764
No 407
>PF12854 PPR_1: PPR repeat
Probab=83.88 E-value=3 Score=22.84 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHH
Q 009799 423 PRTYSNRAACYTKLGAMPEGLKDAD 447 (525)
Q Consensus 423 ~~~~~~la~~~~~~~~~~~A~~~~~ 447 (525)
..+|..+-..+.+.|+.++|.+.|+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444445555555555555555444
No 408
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.75 E-value=32 Score=30.78 Aligned_cols=144 Identities=15% Similarity=0.003 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC---
Q 009799 285 SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN--- 361 (525)
Q Consensus 285 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--- 361 (525)
..-+.+.....+..+..+-++.-..+++++|+. +.+|..++.--.. - ..+|.+.++++++....
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eC-------A~AyvLLAEEEa~--T----i~~AE~l~k~ALka~e~~yr 251 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNEC-------ATAYVLLAEEEAT--T----IVDAERLFKQALKAGETIYR 251 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchh-------hhHHHhhhhhhhh--h----HHHHHHHHHHHHHHHHHHHh
Confidence 344555666677888888899999999999988 4455554432111 1 66777888887763211
Q ss_pred -hhHHHHhchHHHHHHHHHHHhhcCCCcHH--HHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHc
Q 009799 362 -PDTLKKLNEAEKAKKELEQQEIFDPKIAD--EEREKGNEFFKQQKYPEAIQHYTESLRRNPKD--PRTYSNRAACYTKL 436 (525)
Q Consensus 362 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~ 436 (525)
.......+...+|. . ....+.. +...++.+..++|+..+|++.++...+..|-. ..++-++-..+...
T Consensus 252 ~sqq~qh~~~~~da~------~-rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~ 324 (556)
T KOG3807|consen 252 QSQQCQHQSPQHEAQ------L-RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLEL 324 (556)
T ss_pred hHHHHhhhccchhhh------h-hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 01111111111110 0 1112222 23456777777777777777777777666621 12344455555555
Q ss_pred CCchHHHHHHHH
Q 009799 437 GAMPEGLKDADK 448 (525)
Q Consensus 437 ~~~~~A~~~~~~ 448 (525)
.-|.+....+-+
T Consensus 325 QAYADvqavLak 336 (556)
T KOG3807|consen 325 QAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHHHHh
Confidence 444444444333
No 409
>PF12854 PPR_1: PPR repeat
Probab=82.05 E-value=4.6 Score=22.11 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 009799 283 DISYLTNRAAVYLEMGKYEECIKDCDK 309 (525)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 309 (525)
|...|..+...+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456777788888888888888888765
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.54 E-value=22 Score=32.86 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=80.1
Q ss_pred HHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC-------C-CCHH
Q 009799 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPK---DPRTYSNRAACYTKLGAMPEGLKDADKCIELD-------P-TFSK 458 (525)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p-~~~~ 458 (525)
.++..+|.-|...|+.+.|++.|-++-..... ....+.++-.+-..+|+|.....+..++...- + -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 46678899999999999999999996655543 24677888888899999988888887776541 0 0123
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhc--------cCCCCHHHHHHHHH
Q 009799 459 GYTRKGAIQFFLKEYDKALETYQEGLK--------HDPQNQELLDGVRR 499 (525)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~--------~~p~~~~~~~~l~~ 499 (525)
....-|.+.+.+++|..|..+|-.+.. +.|.+..++..+..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcA 279 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCA 279 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHh
Confidence 455567777777899999999877743 24666666655543
No 411
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.94 E-value=38 Score=29.64 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=83.8
Q ss_pred HhhcCCCcHHHHHHhhhHHHhc--CChhHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHcCC---chHHHHHHHHHHhc
Q 009799 381 QEIFDPKIADEEREKGNEFFKQ--QKYPEAIQHYTESLRRNPKDPRTYSNRAACY---TKLGA---MPEGLKDADKCIEL 452 (525)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~---~~~~~---~~~A~~~~~~al~~ 452 (525)
+++.+|.+...|...-.++... .++..-....++.++.++.|..+|...-.+. ...++ +..-.++-..++..
T Consensus 100 ~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~t 179 (328)
T COG5536 100 ALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIET 179 (328)
T ss_pred HHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhh
Confidence 3337888888888777766554 5677788888899999999887776554444 22233 33345555667778
Q ss_pred CCCCHHHHHHH---HHHHHHhcC------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009799 453 DPTFSKGYTRK---GAIQFFLKE------YDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (525)
Q Consensus 453 ~p~~~~~~~~l---a~~~~~~g~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 503 (525)
++.+..+|... -...+..|+ +++-+++.-.++-.+|++..+|..+..+...
T Consensus 180 di~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 180 DIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred CCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 88888888777 333333444 4556677777788899998888776665544
No 412
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.32 E-value=30 Score=33.82 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCChh----HHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHh
Q 009799 347 PAIETFQKALTEHRNPD----TLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (525)
Q Consensus 347 ~A~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 417 (525)
+...+.++++...++++ +..++|+++.|.+...+ .++..-|..+|......+++..|.++|.++-.
T Consensus 625 e~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 625 ESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 33334455555555543 44566777776665533 34566677788888888888888888777643
No 413
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.06 E-value=5.9 Score=34.54 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCC------CHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 009799 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPD------WSKGYSRLGAAHLGLQDYIEAVNSYKKGL 97 (525)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 97 (525)
.......+|..|+..|++++|+..|+.+...... ...++..+..|+...|+.+..+.+.-+++
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4588888999999999999999999988655332 24566778888888998888877655443
No 414
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.69 E-value=85 Score=32.99 Aligned_cols=94 Identities=20% Similarity=0.145 Sum_probs=52.2
Q ss_pred HHhcccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHh--------cCHHHHHHH--HHHHHHc-------cccChhhH
Q 009799 260 AYKKKEFEKAIEHYSSALELDDE-DISYLTNRAAVYLEM--------GKYEECIKD--CDKAVER-------GRELRSDF 321 (525)
Q Consensus 260 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~--------~~~~~A~~~--~~~~l~~-------~~~~~~~~ 321 (525)
+.....++-++.+++.++..... +...+..++..|... ++-+++.+. .++.... .|+..-..
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~ 680 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLER 680 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhh
Confidence 45667888889999998877655 444555555555432 122233333 2222221 22211111
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
..-...|...+.++.++++ .++|+..|-..+.
T Consensus 681 ~~~~~l~ee~aill~rl~k----he~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 681 LNGDELYEERAILLGRLGK----HEEALHIYVHELD 712 (877)
T ss_pred ccchhHHHHHHHHHhhhhh----HHHHHHHHHHHhc
Confidence 1114456666667777777 8888888877665
No 415
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.43 E-value=16 Score=24.57 Aligned_cols=30 Identities=33% Similarity=0.266 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhh
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALE 278 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 278 (525)
.+..+...|.-+-..|++.+|+.+|+++++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455566677777788888888877777664
No 416
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=79.39 E-value=8.9 Score=28.20 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhc
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASL 49 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 49 (525)
....|...+..|++..|.+...++-+..+..+-.+..-|.+-..+
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~ 106 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQ 106 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 344455555555555555555555444333333333333333333
No 417
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=78.74 E-value=15 Score=24.99 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (525)
-.+..+|...-..|+|++|+.+|.++++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566677777777777777777776654
No 418
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.47 E-value=60 Score=30.54 Aligned_cols=63 Identities=10% Similarity=0.040 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHH--HHHHH--HHHHHHhcCHHHHHHHHHHHHHc
Q 009799 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDIS--YLTNR--AAVYLEMGKYEECIKDCDKAVER 313 (525)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~~~~~~A~~~~~~~l~~ 313 (525)
......+..++..++|..|...+..+...-|.+.. .+..+ |.-++..-++.+|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45566778889999999999999999886344333 33343 44556788899999999998764
No 419
>PF13041 PPR_2: PPR repeat family
Probab=78.33 E-value=12 Score=22.66 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHhh
Q 009799 38 LYSNRSAAHASLHNYADALADAKKTV 63 (525)
Q Consensus 38 ~~~~la~~~~~~g~~~~A~~~~~~al 63 (525)
.|..+-..+.+.|++++|.+.|++..
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 420
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=77.71 E-value=5.7 Score=33.74 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=61.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCCchHH--HHHHHHHHhc--CCCCH--HH
Q 009799 398 EFFKQQKYPEAIQHYTESLRRNPKDP------------RTYSNRAACYTKLGAMPEG--LKDADKCIEL--DPTFS--KG 459 (525)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~------------~~~~~la~~~~~~~~~~~A--~~~~~~al~~--~p~~~--~~ 459 (525)
-++..|+++.|+++..-+|+.+-.-| +-...-+......|..-+. ...+...... -|+.. ..
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 35678999999999999987753222 1122333444455553211 1122222211 23333 34
Q ss_pred HHHHHHHHH---------HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009799 460 YTRKGAIQF---------FLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 460 ~~~la~~~~---------~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 505 (525)
+-..|..+. ..++...|+.++++|+.++|+.. +...+.++..++.
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~~lr 225 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG-VKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHh
Confidence 556666663 44678899999999999998853 4444555555544
No 421
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=77.60 E-value=17 Score=32.55 Aligned_cols=95 Identities=17% Similarity=0.081 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHhhhhhHHHHHHHHH
Q 009799 17 DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--KPDWSKGYSRLGAAHLGLQDYIEAVNSYK 94 (525)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 94 (525)
+|..-..+|+-.....|+ |.+-.|.+.+.....-...++...+-.... -..+...+...|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 455555555555555554 666777787777777778888877766554 22455667789999999999999999999
Q ss_pred HhhccCCCcHHHHhhHHh
Q 009799 95 KGLDIDPNNEALKSGLAD 112 (525)
Q Consensus 95 ~al~~~p~~~~~~~~l~~ 112 (525)
+++.+.++..+..+....
T Consensus 390 rAi~La~~~aer~~l~~r 407 (415)
T COG4941 390 RAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHhcCChHHHHHHHHH
Confidence 999999888776554443
No 422
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.59 E-value=10 Score=35.17 Aligned_cols=98 Identities=16% Similarity=0.033 Sum_probs=65.8
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----------CCchhHHHHHHHHHHhhcccH----------HHHHHHH
Q 009799 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISL-----------SPDNHVLYSNRSAAHASLHNY----------ADALADA 59 (525)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~----------~~A~~~~ 59 (525)
|+-.+..+|..++....|++|+.++-.|-+. -.+.+..-..+-+||+.+.+. ..|.+.|
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 4556889999999999999999887666432 223344455677888887753 2333333
Q ss_pred HHhh--------cc-CCCCH------HHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 009799 60 KKTV--------EL-KPDWS------KGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (525)
Q Consensus 60 ~~al--------~~-~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 98 (525)
.++. .+ .|..| ..++.-|.+.+.+|+-++|.++++.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3332 11 12232 3455678999999999999999998754
No 423
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.54 E-value=9.4 Score=31.77 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Q 009799 444 KDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (525)
Q Consensus 444 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 488 (525)
+..++.+...|+ +..+..++.++...|+.++|.....++..+.|
T Consensus 132 ~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334444444453 55555555666666666666666666666655
No 424
>PF13041 PPR_2: PPR repeat family
Probab=77.18 E-value=13 Score=22.36 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 425 TYSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
.|..+-..+.+.|++++|.+.|++..
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 425
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.36 E-value=23 Score=32.76 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCC---chhHHHHHHHHHHhhcccHHHHHHHHHHhhccC-------C-CCHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSP---DNHVLYSNRSAAHASLHNYADALADAKKTVELK-------P-DWSKG 72 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p-~~~~~ 72 (525)
++...|.-|...|+++.|++.|.++-..-. .....+.++-.+-..+|+|..-..+..++...- + -.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 567789999999999999999999644432 234778888888899999998888888876541 0 01234
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhh
Q 009799 73 YSRLGAAHLGLQDYIEAVNSYKKGL 97 (525)
Q Consensus 73 ~~~la~~~~~~g~~~~A~~~~~~al 97 (525)
...-|.+.+.+++|..|..+|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5556677777889999999887654
No 426
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.25 E-value=4.9 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (525)
-.+..+|..+=..|+|++|+.+|..+++
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456667777777777777777777654
No 427
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.55 E-value=40 Score=29.49 Aligned_cols=128 Identities=12% Similarity=0.087 Sum_probs=88.9
Q ss_pred HHHhhcCCCcHHHHHHhhhHHHh--------cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCchHHHHHHHH
Q 009799 379 EQQEIFDPKIADEEREKGNEFFK--------QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL--GAMPEGLKDADK 448 (525)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~ 448 (525)
...+..+|....+|...-.+... ..-.+.-+..+..+++.+|++-.+|...-.++..- .++..-....++
T Consensus 56 ~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkk 135 (328)
T COG5536 56 QELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKK 135 (328)
T ss_pred HHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHH
Confidence 33444566666666554444433 12245667788899999999999999888887665 667888888899
Q ss_pred HHhcCCCCHHHHHHHHHHH------HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 449 CIELDPTFSKGYTRKGAIQ------FFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 449 al~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
.++.++.+..+|...-.+. ..-..+..-.++-..++.-+|-|..+|.........+-+
T Consensus 136 lld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~ 199 (328)
T COG5536 136 LLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFN 199 (328)
T ss_pred HhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHh
Confidence 9999999887776555444 333344445666667788899999999988655555444
No 428
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.53 E-value=6.1 Score=26.12 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (525)
.+...|...-..|+|++|+.+|.+++.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456667777777777777777777654
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.19 E-value=58 Score=28.19 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHcc
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDED-ISYLTNRAAVYLE-MGKYEECIKDCDKAVERG 314 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~ 314 (525)
+..++.+..+.|+|++.+.++++++..+|.- .+-...++.+|-. .|....+...+.......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 5677888999999999999999999987753 3445555555533 455556666665555433
No 430
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.12 E-value=1.1e+02 Score=31.24 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
.-.+....|......|++++|+.+|.-+ |+++.++.++.+.+.
T Consensus 413 ~~~i~~~~A~~~e~~g~~~dAi~Ly~La---------------------~~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 413 LREIIEQAAREAEERGRFEDAILLYHLA---------------------EEYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHT---------------------T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------hhHHHHHHHHHHHHH
Confidence 3444555677788889999998887754 477777777777765
No 431
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.77 E-value=2.3e+02 Score=35.00 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----cC----HHHHHHHHHHHhccCCCCHHHH
Q 009799 423 PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFL----KE----YDKALETYQEGLKHDPQNQELL 494 (525)
Q Consensus 423 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~----~~~A~~~~~~a~~~~p~~~~~~ 494 (525)
+..+...|....++|+.++|-..|..|++++...+.+|..-|...... +. -..|+.+|-+|....- +..+.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~-~skaR 2890 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN-SSKAR 2890 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc-chhhH
Confidence 466778899999999999999999999999988889988888765542 22 2457777777765543 35567
Q ss_pred HHHHHHHHHhhhhcc
Q 009799 495 DGVRRCVQQINKAGR 509 (525)
Q Consensus 495 ~~l~~~~~~~~~~~~ 509 (525)
..+++++.-+.-.+.
T Consensus 2891 k~iakvLwLls~dda 2905 (3550)
T KOG0889|consen 2891 KLIAKVLWLLSFDDS 2905 (3550)
T ss_pred HHHHHHHHHHHhccc
Confidence 777777776664433
No 432
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=72.88 E-value=6 Score=20.58 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=6.5
Q ss_pred HHHHHcCCchHHHHHHH
Q 009799 431 ACYTKLGAMPEGLKDAD 447 (525)
Q Consensus 431 ~~~~~~~~~~~A~~~~~ 447 (525)
..|.+.|++++|...|+
T Consensus 8 ~~~~~~~~~~~a~~~~~ 24 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFD 24 (31)
T ss_pred HHHHccchHHHHHHHHH
Confidence 33333333333333333
No 433
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.51 E-value=68 Score=30.14 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHH
Q 009799 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF 399 (525)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (525)
....++..++..|.+...... |++|+.++-.+-+.. ..+-.+.++.-.+.+-....+.+||
T Consensus 158 kAlmmglg~hekaRa~m~re~----y~eAl~~LleADe~F---------------~~Cd~klLe~VDNyallnLDIVWCY 218 (568)
T KOG2561|consen 158 KALMMGLGLHEKARAAMEREM----YSEALLVLLEADESF---------------SLCDSKLLELVDNYALLNLDIVWCY 218 (568)
T ss_pred HHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHhhHHH---------------HhhhHHHHHhhcchhhhhcchhhee
Confidence 334456777778888888888 888888776554421 1122334444455555666677788
Q ss_pred HhcCCh---hH-------HHHHHHHHHh--------c-CCCCH------HHHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 400 FKQQKY---PE-------AIQHYTESLR--------R-NPKDP------RTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 400 ~~~~~~---~~-------A~~~~~~al~--------~-~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
+..++. +. |.+.|.++.- + .+..| ..+..-|.+.+.+|+-++|.++++.+...
T Consensus 219 frLknitcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 219 FRLKNITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhcccccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 776652 23 3333333321 1 12222 34566789999999999999999988653
No 434
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=72.45 E-value=37 Score=25.92 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
.+...+|+-+.--+.+....+....++..+..+|.+|.+.|+..++-+.+.++.+
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 435
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.07 E-value=44 Score=25.46 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=26.3
Q ss_pred HHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 407 EAIQHYTESLR--RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 407 ~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
.+.++|..+.. +....+..|...|..+...|++++|.+.|+.+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 56666665553 234456666666666777777777776666553
No 436
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=70.89 E-value=51 Score=29.16 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=78.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCc--hhHHHHHHHHH---HhhcccH----HHHHHHHHHhhccCCCCHHHHHHHHH
Q 009799 8 KGNAAFSSGDYEAAVRHFTEAISLSPD--NHVLYSNRSAA---HASLHNY----ADALADAKKTVELKPDWSKGYSRLGA 78 (525)
Q Consensus 8 ~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~---~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~ 78 (525)
....++..|+|++=-..|.+......+ ..+..+..+.. ...+... ..-...++.-++..|++..+++.+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567789999999988888888754332 12211222222 2222221 23566777778889999999999998
Q ss_pred HHhhhh----------------------hHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhc
Q 009799 79 AHLGLQ----------------------DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (525)
Q Consensus 79 ~~~~~g----------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (525)
.+.... -.+.|...+.+++.++|....+...+..+-...|..
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 887541 357888999999999999999988887776665543
No 437
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=70.78 E-value=19 Score=26.86 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCc---------------hhHHHHHHHHHHhhcccHHHHHHHHHHh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD---------------NHVLYSNRSAAHASLHNYADALADAKKT 62 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 62 (525)
+.+...|...++.+++-.++-.|++|+....+ ......++|..+..+|+.+-.+++++-|
T Consensus 2 e~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 2 EKHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 34667888889999998888888888765221 1233456666777777777666666533
No 438
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=69.72 E-value=11 Score=32.05 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=54.8
Q ss_pred HHhcCCHHHHHHHHHHHhccCCchh------------HHHHHHHHHHhhcccHHH--HHHHHHHhhc-c-CCCCH--HHH
Q 009799 12 AFSSGDYEAAVRHFTEAISLSPDNH------------VLYSNRSAAHASLHNYAD--ALADAKKTVE-L-KPDWS--KGY 73 (525)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~--A~~~~~~al~-~-~p~~~--~~~ 73 (525)
.+..|+|+.|+++..-+|+.+-.-| +-...-+......|+.-+ -...+..+.. . -|+.. ..+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3567999999999999998743222 222333344444554211 1222222221 1 13333 345
Q ss_pred HHHHHHHh---------hhhhHHHHHHHHHHhhccCCCc
Q 009799 74 SRLGAAHL---------GLQDYIEAVNSYKKGLDIDPNN 103 (525)
Q Consensus 74 ~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 103 (525)
-..|..+. ..++...|+.++++|+.++|+.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 55666663 4568889999999999999875
No 439
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=68.57 E-value=96 Score=29.70 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Q 009799 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDD 281 (525)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 281 (525)
....+|+.++..++|+.|...|+.+.+-..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 355689999999999999999999877543
No 440
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.48 E-value=68 Score=31.61 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=32.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 292 AVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 292 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
.+..+.|+++.|..+..++- + ..-|..+|.+....++ +..|.++|.++..
T Consensus 645 elal~lgrl~iA~~la~e~~-----s-------~~Kw~~Lg~~al~~~~----l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN-----S-------EVKWRQLGDAALSAGE----LPLASECFLRARD 694 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc-----c-------hHHHHHHHHHHhhccc----chhHHHHHHhhcc
Confidence 34567788888877655542 2 2334555555555555 8888888888765
No 441
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=67.97 E-value=1.9e+02 Score=31.48 Aligned_cols=158 Identities=17% Similarity=0.117 Sum_probs=77.5
Q ss_pred hcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhc
Q 009799 262 KKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKC 341 (525)
Q Consensus 262 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (525)
..++|++|+..+.++= ++. +-..-..-.+.|.|.+|+.+|.- +.... -.++...+.-+.....
T Consensus 892 ~L~ry~~AL~hLs~~~---~~~---~~e~~n~I~kh~Ly~~aL~ly~~-------~~e~~---k~i~~~ya~hL~~~~~- 954 (1265)
T KOG1920|consen 892 YLKRYEDALSHLSECG---ETY---FPECKNYIKKHGLYDEALALYKP-------DSEKQ---KVIYEAYADHLREELM- 954 (1265)
T ss_pred HHHHHHHHHHHHHHcC---ccc---cHHHHHHHHhcccchhhhheecc-------CHHHH---HHHHHHHHHHHHHhcc-
Confidence 3467777777766542 111 11111122234555555544432 22222 2233333343444444
Q ss_pred ccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHH---HHhhhHHHhcCChhHHHHHHHHHHhc
Q 009799 342 SKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEE---REKGNEFFKQQKYPEAIQHYTESLRR 418 (525)
Q Consensus 342 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~al~~ 418 (525)
+++|.-.|+.+-+....-.++...++|.+++....+. .+...+.. ..++..+..++++-+|-++....+..
T Consensus 955 ---~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 955 ---SDEAALMYERCGKLEKALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred ---ccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 6666555555544333333444455566665555543 33333333 66777788888888888887766542
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 009799 419 NPKDPRTYSNRAACYTKLGAMPEGLKDADKC 449 (525)
Q Consensus 419 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (525)
|..+. ..+.+...|++|+.....+
T Consensus 1029 -~~~av------~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 -PEEAV------ALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred -HHHHH------HHHhhHhHHHHHHHHHHhc
Confidence 22221 2233444566666555443
No 442
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=67.76 E-value=13 Score=27.84 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009799 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (525)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 497 (525)
..+|..+...|++++|..+|-+|+...|+-.+.+..+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456666666666666666666666666655444433
No 443
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=67.75 E-value=99 Score=28.26 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=35.9
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 468 (525)
...|.....++...++|++=..... ...+|-.|.-...++...|+..+|..+..+ + |+ ......|.
T Consensus 208 krfw~lki~aLa~~~~w~eL~~fa~-----skKsPIGyepFv~~~~~~~~~~eA~~yI~k---~-~~-----~~rv~~y~ 273 (319)
T PF04840_consen 208 KRFWWLKIKALAENKDWDELEKFAK-----SKKSPIGYEPFVEACLKYGNKKEASKYIPK---I-PD-----EERVEMYL 273 (319)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHh-----CCCCCCChHHHHHHHHHCCCHHHHHHHHHh---C-Ch-----HHHHHHHH
Confidence 3344445555555555554333221 122334444444555555555555555554 1 11 33444555
Q ss_pred HhcCHHHHHHH
Q 009799 469 FLKEYDKALET 479 (525)
Q Consensus 469 ~~g~~~~A~~~ 479 (525)
+.|++.+|.+.
T Consensus 274 ~~~~~~~A~~~ 284 (319)
T PF04840_consen 274 KCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHH
Confidence 56666665543
No 444
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=67.65 E-value=55 Score=25.29 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 009799 370 EAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKC 449 (525)
Q Consensus 370 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (525)
.....+.+++..+..++.++..+..+..+|... +..+.++.++. .++. --.-..+.+..+.+-++++...+.+.
T Consensus 22 ~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~-yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 22 LLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNH-YDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----cccc-CCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 344444455555546666777777777777654 34555565552 1111 11123444445555566666665542
Q ss_pred HhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009799 450 IELDPTFSKGYTRKGAIQF-FLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501 (525)
Q Consensus 450 l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 501 (525)
..+..+ -.++. ..++++.|++++.+ +.+++.|..+....
T Consensus 96 ----~~~~~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 96 ----GNFKDA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred ----cCHHHH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 111111 11222 23778888887776 34677777766544
No 445
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=67.65 E-value=89 Score=27.71 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009799 473 YDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 473 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 505 (525)
.+.|...+.+++.++|....+...+..+-..+|
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 345555666666666666555555555544444
No 446
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=67.52 E-value=25 Score=26.27 Aligned_cols=64 Identities=14% Similarity=-0.035 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhcCHHHHHHHHHHH----hccC
Q 009799 427 SNRAACYTKLGAMPEGLKDADKCIELDPT---------------FSKGYTRKGAIQFFLKEYDKALETYQEG----LKHD 487 (525)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a----~~~~ 487 (525)
..+|...++.+++-.++-.|++|+.+..+ ....-.++|..+..+|+.+-.++|++-| +.+-
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLi 84 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLI 84 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555555555543111 1224467888888888888888887655 3455
Q ss_pred CCC
Q 009799 488 PQN 490 (525)
Q Consensus 488 p~~ 490 (525)
|+.
T Consensus 85 PQC 87 (140)
T PF10952_consen 85 PQC 87 (140)
T ss_pred cCC
Confidence 554
No 447
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=67.29 E-value=47 Score=24.39 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 009799 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGK 299 (525)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~ 299 (525)
............|...+..|++..|.+...++-+..+..+-.+..-+..-..+||
T Consensus 54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3445666777788889999999999999999977755555555555666655554
No 448
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.23 E-value=7.9 Score=26.08 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAI 29 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al 29 (525)
..+|...=..|+|++|+.+|..++
T Consensus 10 v~~A~~eD~~gny~eA~~lY~~al 33 (75)
T cd02680 10 VTQAFDEDEKGNAEEAIELYTEAV 33 (75)
T ss_pred HHHHHHhhHhhhHHHHHHHHHHHH
Confidence 333444444444444444444444
No 449
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.18 E-value=47 Score=29.71 Aligned_cols=67 Identities=10% Similarity=-0.011 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHccc-cChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 009799 285 SYLTNRAAVYLEMGKYEECIKDCDKAVERGR-ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKAL 356 (525)
Q Consensus 285 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 356 (525)
.....+|.+|...++|..|...+.-. ..+. ............+.+++.+|.+.++ ..+|..+.+++-
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d----~veae~~inRaS 171 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDD----KVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHH
Confidence 34566777777777777766655432 1111 1111222235667788888888887 888887777654
No 450
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=67.05 E-value=87 Score=27.32 Aligned_cols=204 Identities=13% Similarity=0.072 Sum_probs=125.6
Q ss_pred HHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHH
Q 009799 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK 337 (525)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (525)
-.+..+-....|+..+...+......+.+.+..|.++-..| ..+...++++.. .+|...... .....+..+-..
T Consensus 57 ay~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~~~~l~k~~-~dp~~~v~E----Tc~lAi~rle~~ 130 (289)
T KOG0567|consen 57 AYVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPESLEILTKYI-KDPCKEVRE----TCELAIKRLEWK 130 (289)
T ss_pred hhhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chhhHHHHHHHh-cCCccccch----HHHHHHHHHHHh
Confidence 33444555678999999999888888999999999999999 777888888888 555432211 111111111110
Q ss_pred hhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHh
Q 009799 338 MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLR 417 (525)
Q Consensus 338 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 417 (525)
.+- + .+..-......+|.+. ...+...+....+ .++..+......+..+.+.-..++|+..+-..+.
T Consensus 131 ~~~-----~-~~~~~~p~~SvdPa~p--~~~ssv~~lr~~l-----ld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~ 197 (289)
T KOG0567|consen 131 DII-----D-KIANSSPYISVDPAPP--ANLSSVHELRAEL-----LDETKPLFERYRAMFYLRNIGTEEAINALIDGLA 197 (289)
T ss_pred hcc-----c-cccccCccccCCCCCc--cccccHHHHHHHH-----HhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcc
Confidence 000 0 0000001112233322 1111111111111 3445555666667667766667999998888776
Q ss_pred cCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 009799 418 RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (525)
Q Consensus 418 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (525)
.. ++......|.++-+++ -..|+..+.+.+.....++-....-+..+-..++ ++++..+++.+
T Consensus 198 ~~--SalfrhEvAfVfGQl~-s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-e~~~~vL~e~~ 260 (289)
T KOG0567|consen 198 DD--SALFRHEVAFVFGQLQ-SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-EDCVEVLKEYL 260 (289)
T ss_pred cc--hHHHHHHHHHHHhhcc-chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-HHHHHHHHHHc
Confidence 55 5556666777776665 4788999999999888888888888888888777 56777776654
No 451
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.32 E-value=24 Score=29.36 Aligned_cols=49 Identities=29% Similarity=0.361 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCC
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP 454 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 454 (525)
.+..++..++.++..| ++.++..++.++...|+.++|.....++....|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445566677777777 688888889999999999999999999988888
No 452
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=66.27 E-value=13 Score=19.74 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 426 YSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 426 ~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
|..+-..|.+.|++++|.+.|.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444555555555555555443
No 453
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=65.59 E-value=18 Score=19.07 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=15.8
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009799 477 LETYQEGLKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 477 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 504 (525)
+++-..++..+|.|..+|.....++..+
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 3445555666666666666555555443
No 454
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=65.36 E-value=94 Score=27.12 Aligned_cols=94 Identities=20% Similarity=0.111 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (525)
........+..+.+.---++|+..+-..+..+ +.-.....|.++-+++. ..|+..+.+.+....+++-..-.-+.++
T Consensus 168 ~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvAfVfGQl~s-~~ai~~L~k~L~d~~E~pMVRhEaAeAL 244 (289)
T KOG0567|consen 168 KPLFERYRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVAFVFGQLQS-PAAIPSLIKVLLDETEHPMVRHEAAEAL 244 (289)
T ss_pred hhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--hHHHHHHHHHHHhhccc-hhhhHHHHHHHHhhhcchHHHHHHHHHH
Confidence 34444456667777666799999988877765 56666777777766644 5688888888886666654444445555
Q ss_pred HHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 329 TRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
..+| -++++..+++.+.
T Consensus 245 GaIa------------~e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 245 GAIA------------DEDCVEVLKEYLG 261 (289)
T ss_pred Hhhc------------CHHHHHHHHHHcC
Confidence 5555 5778877777665
No 455
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.97 E-value=2.1e+02 Score=31.05 Aligned_cols=187 Identities=16% Similarity=0.100 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhh------HHHhhhcccchHHHHHHHHHHHh
Q 009799 284 ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTA------LVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 284 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
+...+.+|.+|...|...+|+.+|.++..-..+. +++..+-.- -...|+....-..|+.+|.++++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~--------~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~r 991 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEG--------NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVR 991 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccH--------HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHH
Confidence 4456788999999999999999999998754432 222211110 00122211123446788888887
Q ss_pred cCCChhHHHHhchHHHHHHHHHHHhhcC----CCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCH---HHHHHHH
Q 009799 358 EHRNPDTLKKLNEAEKAKKELEQQEIFD----PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP---RTYSNRA 430 (525)
Q Consensus 358 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la 430 (525)
.+...+-.+.+.+....+++.- |..+..+..+-+-+...|.+-+|...+ -.+|+.. ..+..+-
T Consensus 992 ------lle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 992 ------LLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLV 1061 (1480)
T ss_pred ------HHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHH
Confidence 5566666777777777776643 334445555556667788888876543 4466532 4566677
Q ss_pred HHHHHcCCch------------HHHH-HHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHH-HHHHHHhccCC
Q 009799 431 ACYTKLGAMP------------EGLK-DADKCIELDPTF-SKGYTRKGAIQFFLKEYDKAL-ETYQEGLKHDP 488 (525)
Q Consensus 431 ~~~~~~~~~~------------~A~~-~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~p 488 (525)
.+++..|+++ +-.. .++.+-...|-. ...|..|--.+...+++.+|- ..|+.+..+..
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 7777777653 2222 333333334432 334444445566788887765 45677766543
No 456
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=64.94 E-value=12 Score=25.30 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (525)
.+..+|...-..|+|++|+.+|.++++
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555556666666666666655543
No 457
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.06 E-value=68 Score=32.50 Aligned_cols=187 Identities=15% Similarity=0.138 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh
Q 009799 283 DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP 362 (525)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 362 (525)
.+++..++-..|....+|+.-++..+..-. -|+..... ....+.+..+.++-+ .+..||-++|+...-.+++.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vv-e~~nv~f~YaFALNR-RNr~GDRakAL~~~l~lve~---- 272 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVV-ETHNVRFHYAFALNR-RNRPGDRAKALNTVLPLVEK---- 272 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-Ccchhhhh-ccCceEEEeeehhcc-cCCCccHHHHHHHHHHHHHh----
Confidence 457777888888889999988888776544 34211100 000111111111111 11245577777777777663
Q ss_pred hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH---------hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 363 DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF---------KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACY 433 (525)
Q Consensus 363 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 433 (525)
..|-.++.+...|.+|- ..+..+.|+.+|+++++..|.. ..=.+++.++
T Consensus 273 ---------------------eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL 330 (1226)
T KOG4279|consen 273 ---------------------EGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLL 330 (1226)
T ss_pred ---------------------cCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHH
Confidence 23444555555565553 3455678899999999988853 2234555555
Q ss_pred HHcCC-chHHHHHHHHHHhcCC--------CCHHHHHHHHHHH---HHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 009799 434 TKLGA-MPEGLKDADKCIELDP--------TFSKGYTRKGAIQ---FFLKEYDKALETYQEGLKHDPQNQELLDGVR 498 (525)
Q Consensus 434 ~~~~~-~~~A~~~~~~al~~~p--------~~~~~~~~la~~~---~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 498 (525)
...|+ ++...+.=.-.+.++. .....|+..|..+ ...+++.+|++.-+...++.|-.-.....+.
T Consensus 331 ~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~me 407 (1226)
T KOG4279|consen 331 RAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTME 407 (1226)
T ss_pred HHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHH
Confidence 55554 3433333333333211 1122333334332 3357899999999999999886544333333
No 458
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.88 E-value=13 Score=25.27 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=10.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEA 28 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~a 28 (525)
..+|...-..|++++|+.+|.++
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a 34 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKA 34 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444444444443
No 459
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.68 E-value=1.3e+02 Score=30.73 Aligned_cols=113 Identities=21% Similarity=0.208 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCc------hhHHHHHHHHHHh---hcccHHHHHHHHHHhhccC-CCCHHHHHH
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPD------NHVLYSNRSAAHA---SLHNYADALADAKKTVELK-PDWSKGYSR 75 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 75 (525)
.+.-..|....+|+.-++..+..-.+ |+ .+...+..+.++- +-|+-++|+...-.+++.. |-.++.+..
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl 283 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCL 283 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeee
Confidence 34444566667777666666554333 32 1223333344443 3477888998888888765 456778888
Q ss_pred HHHHHhhh---------hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhc
Q 009799 76 LGAAHLGL---------QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (525)
Q Consensus 76 la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (525)
.|++|..+ +..+.|+.+|+++++..|... .-..++.++...|..
T Consensus 284 ~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 284 CGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEH 336 (1226)
T ss_pred echhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhh
Confidence 88888643 667899999999999998643 334566666666553
No 460
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.50 E-value=14 Score=33.40 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCC--------chhHHHHHHHHHHhhcccHHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSP--------DNHVLYSNRSAAHASLHNYADALA 57 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~ 57 (525)
..+...|+..+..++++.|...|..|..+.. ....+++.+|.+++..++.+..+-
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888888888888888888876532 234666666777666666655443
No 461
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=63.14 E-value=1.3e+02 Score=29.56 Aligned_cols=92 Identities=17% Similarity=0.266 Sum_probs=50.0
Q ss_pred HhhhHHHhcC---ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc-----CCCCHHHHHHHHH
Q 009799 394 EKGNEFFKQQ---KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL-----DPTFSKGYTRKGA 465 (525)
Q Consensus 394 ~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~ 465 (525)
.+-++++..| +|.-|+-.+-..-++.|. ..-..++..|.+++.. +..+...|..+|.
T Consensus 262 ~lLw~lyd~ghl~~YPmALg~LadLeEi~pt---------------~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg 326 (618)
T PF05053_consen 262 DLLWLLYDMGHLARYPMALGNLADLEEIDPT---------------PGRPTPLELFNEAISSARTYYNNHHVYPYTYLGG 326 (618)
T ss_dssp HHHHHHHHTTTTTT-HHHHHHHHHHHHHS-----------------TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHH
T ss_pred HHHHHHHhcCchhhCchhhhhhHhHHhhccC---------------CCCCCHHHHHHHHHHHHHHHhcCCccccceehhh
Confidence 3444444444 355555555555555553 2234556666666653 3345567778888
Q ss_pred HHHHhcCHHHHHHHHHHHhcc------CCCCHHHHHHHHHH
Q 009799 466 IQFFLKEYDKALETYQEGLKH------DPQNQELLDGVRRC 500 (525)
Q Consensus 466 ~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~ 500 (525)
.+++.+++.+|+.++-.+-.. .-++.+++..+-.+
T Consensus 327 ~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 327 YYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 888888888888888776442 34455666555444
No 462
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=63.05 E-value=16 Score=19.77 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHhccCCchhHHHHHHH
Q 009799 17 DYEAAVRHFTEAISLSPDNHVLYSNRS 43 (525)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~~~~~la 43 (525)
.++.|..+|++.+...|+ +..|...|
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 355566666666665554 44444443
No 463
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=62.46 E-value=22 Score=26.72 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=14.6
Q ss_pred HHHHHHhhcccHHHHHHHHHHhhccCCC
Q 009799 41 NRSAAHASLHNYADALADAKKTVELKPD 68 (525)
Q Consensus 41 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 68 (525)
.+|..+...|++++|...|-+|+...|+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3555555555555555555555555553
No 464
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=61.36 E-value=14 Score=24.95 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAIS 30 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (525)
+..+|...-..|+|++|+.+|..+++
T Consensus 9 lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 9 LVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 465
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=60.83 E-value=91 Score=25.46 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
..+|.+++.++. +-++..+.+.+...++...+ + +....|..... ...+..+.-..+.+.|.++--+|-
T Consensus 128 ~~Ka~~y~traC--dl~~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p-~~~~~~~~~~kDMdka~qfa~kAC 195 (248)
T KOG4014|consen 128 SEKAERYMTRAC--DLEDGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP-LDRAELGSLSKDMDKALQFAIKAC 195 (248)
T ss_pred cHHHHHHHHHhc--cCCCchHHHHHHHHHhccch--h-------hcccCCCCCCC-cchhhhhhhhHhHHHHHHHHHHHH
Confidence 344555555554 44566677777766654322 2 22223421111 123444555678899999988888
Q ss_pred hcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcc
Q 009799 451 ELDPTFSKGYTRKGAIQFF----LKEYDKALETYQEGLKH 486 (525)
Q Consensus 451 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 486 (525)
++ +++.+-.++.+.|.. -++-++|..+-.+|.++
T Consensus 196 el--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 196 EL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 77 456777777777654 23567777777777654
No 466
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.47 E-value=2.3e+02 Score=30.02 Aligned_cols=35 Identities=23% Similarity=0.127 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELD 280 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 280 (525)
.-....-+..++..|...|+.++|++.+.+.....
T Consensus 500 ~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 500 VLKKSKKYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred HHHhcccHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 33455567788888999999999999998887733
No 467
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=60.45 E-value=1.8e+02 Score=28.86 Aligned_cols=156 Identities=14% Similarity=0.055 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC--ChhHHHHHHHHHHhcCCCC
Q 009799 345 YEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ--KYPEAIQHYTESLRRNPKD 422 (525)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~ 422 (525)
|..|.++++.++...|.. .+..-++.++|+..+++...- ....-.....|.++..-+ .-..=..+|+.+++.+|..
T Consensus 300 yk~a~KYLR~al~s~p~v-lLl~~~~l~eal~~~e~~c~~-~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~ 377 (547)
T PF14929_consen 300 YKYAVKYLRLALQSNPPV-LLLIGGRLKEALNELEKFCIS-STCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTM 377 (547)
T ss_pred HHHHHHHHHHHhcCCCCe-EEeccccHHHHHHHHHHhccC-CCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcH
Confidence 777778887777766665 556667888887777764432 223333444555555555 5566678899999999976
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHH---HhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHhcc---------CCC
Q 009799 423 PRTYSNRAACYTKLGAMPEGLKDADKC---IELDPTFSKGYTRKGAIQFF-LKEYDKALETYQEGLKH---------DPQ 489 (525)
Q Consensus 423 ~~~~~~la~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~---------~p~ 489 (525)
......+...+.. ...+.+.++-+ +.+.|. ..+|...+.++.+ .++++.-.+..+.++++ +-.
T Consensus 378 ~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s-~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~ 453 (547)
T PF14929_consen 378 SYSLERLILLHQK---DYSAEQLLEMIALHLDLVPS-HPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRK 453 (547)
T ss_pred HHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHhccccccccHHHHHHHHhcchhccccccccc
Confidence 6555555544443 45566666532 233444 5778888888888 66666555556666432 345
Q ss_pred CHHHHHHHHHHHHHhhh
Q 009799 490 NQELLDGVRRCVQQINK 506 (525)
Q Consensus 490 ~~~~~~~l~~~~~~~~~ 506 (525)
+..+|..+......+-.
T Consensus 454 n~~aW~~l~~~l~~i~~ 470 (547)
T PF14929_consen 454 NIQAWKLLAKKLPKIFD 470 (547)
T ss_pred ccHHHHHHHHHhhHhhh
Confidence 67888888888776554
No 468
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=60.33 E-value=77 Score=31.48 Aligned_cols=82 Identities=9% Similarity=-0.033 Sum_probs=65.5
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHH
Q 009799 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (525)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 90 (525)
.+-+....+.+....+.-+......+...+..|..+-..|..+.|-.+|++.+..+|+ ++++..+.-+.+.|-...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 3445566677777777777666667778888888888899999999999999999888 67788888888888888888
Q ss_pred HHHH
Q 009799 91 NSYK 94 (525)
Q Consensus 91 ~~~~ 94 (525)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 8777
No 469
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=59.94 E-value=17 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAI 29 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al 29 (525)
+...|...-..|+|++|+.+|..++
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEAL 33 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555566666655555544
No 470
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.62 E-value=1.3e+02 Score=26.73 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=69.9
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---HH---HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH---H
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PR---TYSNRAACYTKLGAMPEGLKDADKCIELDPTFS---K 458 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~ 458 (525)
..+++.++|..|.+.++.+.+.+.+.+.++..-.. .+ .-..+|.+|..+.-.++.++.....++...+.. .
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 46789999999999999999999988877643221 22 334566666666656777777777776644321 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Q 009799 459 GYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 489 (525)
.-...|.......++.+|-..+-..+.-...
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 3344566667778899998888877765433
No 471
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=59.08 E-value=1.8e+02 Score=28.29 Aligned_cols=226 Identities=14% Similarity=0.077 Sum_probs=120.3
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHH--HHHHHh--hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 009799 236 LTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIE--HYSSAL--ELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAV 311 (525)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~~l--~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 311 (525)
+..+...+.........-..+|.|-....+....+. +..-.+ ...|-+...+..+-.++.....+.-....+.+.+
T Consensus 14 ~keld~~i~~~~~~~~~~~~~~ic~~hl~~~k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l 93 (711)
T COG1747 14 FKELDRIIAEAKRQSILDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVL 93 (711)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 444444444444444444444444443333333322 112222 2345555556666666666667777777888888
Q ss_pred HccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHH
Q 009799 312 ERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADE 391 (525)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 391 (525)
....+ -.++..++.+|...+ .++-....++.++ .+-++...
T Consensus 94 ~~~e~--------kmal~el~q~y~en~-----n~~l~~lWer~ve--------------------------~dfnDvv~ 134 (711)
T COG1747 94 EYGES--------KMALLELLQCYKENG-----NEQLYSLWERLVE--------------------------YDFNDVVI 134 (711)
T ss_pred Hhcch--------HHHHHHHHHHHHhcC-----chhhHHHHHHHHH--------------------------hcchhHHH
Confidence 76554 356666677666653 4555555555555 45555555
Q ss_pred HHHhhhHHHhcCChhHHHHHHHHHHhcC-CC--CH---HHHHHHHHHHHHcCCchHHHHHHHHHHhcCC-CCHHHH-HHH
Q 009799 392 EREKGNEFFKQQKYPEAIQHYTESLRRN-PK--DP---RTYSNRAACYTKLGAMPEGLKDADKCIELDP-TFSKGY-TRK 463 (525)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~--~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~-~~l 463 (525)
-..++..|.. ++-+++..+|.+++... |. ++ ++|..+-. .--.+.+.-+....+.-.... ....+. -.+
T Consensus 135 ~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 135 GRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 6666666665 77788888888877432 21 11 22222211 001222222222222222211 111222 222
Q ss_pred HHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009799 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ 503 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 503 (525)
-.-|....++.+|+..+...++.+..+..+...+..-+..
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 2344556788888888888888888888888777766655
No 472
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=58.96 E-value=18 Score=33.30 Aligned_cols=47 Identities=26% Similarity=0.237 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh------------HHHHHHHHHHhhcc
Q 009799 51 NYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD------------YIEAVNSYKKGLDI 99 (525)
Q Consensus 51 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~ 99 (525)
-...|++++++|.. .+.|..|..+|.++..+|+ |.+|...+.+|-..
T Consensus 333 l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 333 LIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 35566777766654 3355666666666666654 67777777777654
No 473
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.58 E-value=62 Score=30.29 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 263 KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKA 310 (525)
Q Consensus 263 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 310 (525)
.+..-+|+.+++.++..+|.+......+..+|...|-...|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 345678999999999999999999999999999999999999999764
No 474
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=58.18 E-value=33 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHH
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSA 276 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~ 276 (525)
+...|.-+-..|++++|+.+|.++
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333444444445555554444443
No 475
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=58.05 E-value=1.4e+02 Score=26.85 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHH--HhcCCC--CHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 009799 374 AKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTES--LRRNPK--DPRTYSNRAACYTKLGAMPEGLKDADKC 449 (525)
Q Consensus 374 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (525)
-+..+++-....|+..++.+..+...+.-|+|..|-.++-.. +..+|+ ...++...--.-.-..+|+-|++.+.+.
T Consensus 114 ~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 114 NLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444555555588999999999999999999999998876543 333332 2233332222334456789999888776
Q ss_pred Hhc
Q 009799 450 IEL 452 (525)
Q Consensus 450 l~~ 452 (525)
-+.
T Consensus 194 re~ 196 (432)
T KOG2758|consen 194 REY 196 (432)
T ss_pred HHH
Confidence 543
No 476
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=57.96 E-value=15 Score=24.78 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAI 29 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al 29 (525)
+.+|...-..|+|++|..+|..++
T Consensus 10 ~~~Ave~d~~~~y~eA~~~Y~~~i 33 (75)
T cd02677 10 IRLALEKEEEGDYEAAFEFYRAGV 33 (75)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444444443
No 477
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=57.59 E-value=30 Score=32.00 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 441 EGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 441 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
.|+.++++|.. .+.|..|..+|.++..+|+
T Consensus 336 ~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 336 KALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 34444444433 2334445555555444443
No 478
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=57.16 E-value=1.7e+02 Score=27.43 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=13.1
Q ss_pred HhcCChhHHHHHHHHHHhc
Q 009799 400 FKQQKYPEAIQHYTESLRR 418 (525)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~ 418 (525)
...|+|+.|+..+-+++++
T Consensus 257 ~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 257 ATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 3678888887776666653
No 479
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.91 E-value=1.5e+02 Score=26.35 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=39.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 291 AAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 291 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
+..-......++-++.+++.++....+. .....++++.++|..|...++ .+.+.+++.+.+.
T Consensus 82 ~~~n~l~kkneeki~Elde~i~~~eedn-gE~e~~ea~~n~aeyY~qi~D----~~ng~~~~~~~~~ 143 (412)
T COG5187 82 GRMNTLLKKNEEKIEELDERIREKEEDN-GETEGSEADRNIAEYYCQIMD----IQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHH
Confidence 3333344455666666755555333222 122237888999999999988 8888888877766
No 480
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=55.77 E-value=2e+02 Score=28.72 Aligned_cols=56 Identities=5% Similarity=-0.066 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 009799 424 RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQ 481 (525)
Q Consensus 424 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (525)
...+..+..+-..+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 43 LAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 33344444444444444455555554444444 333444444444444444444443
No 481
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=55.65 E-value=30 Score=18.28 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 286 YLTNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 286 ~~~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
.|..+..++.+.|+++.|..+++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555666666777777666666554
No 482
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.18 E-value=27 Score=23.89 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=8.7
Q ss_pred cCChhHHHHHHHHHHh
Q 009799 402 QQKYPEAIQHYTESLR 417 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~ 417 (525)
.|+.++|+.+|++++.
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3555555555555543
No 483
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=54.93 E-value=67 Score=30.07 Aligned_cols=44 Identities=16% Similarity=-0.029 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHH
Q 009799 372 EKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTES 415 (525)
Q Consensus 372 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 415 (525)
-+|+-.++.++..+|.+......+..+|...|-.+.|...|...
T Consensus 200 ~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 200 LQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34444555555588999999999999999999999998888653
No 484
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.09 E-value=42 Score=22.78 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhh
Q 009799 252 KEKEAGNAAYKKKEFEKAIEHYSSALE 278 (525)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~~l~ 278 (525)
.+...|.-+-..|+|++|+.+|..+++
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444555555555555555555543
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.83 E-value=1.2e+02 Score=24.80 Aligned_cols=46 Identities=4% Similarity=0.045 Sum_probs=32.4
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMP 440 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 440 (525)
....++++.|.+++|.+.+++... +|++......|..+-...+.+.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccccc
Confidence 345678889999999999999888 7777666555555554444443
No 486
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=52.36 E-value=37 Score=18.28 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHh
Q 009799 17 DYEAAVRHFTEAI 29 (525)
Q Consensus 17 ~~~~A~~~~~~al 29 (525)
+..+|+.+|+++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555555443
No 487
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.31 E-value=32 Score=32.62 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcc
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH 50 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 50 (525)
...++|...+.+|+|.=+.+..++++-.+|++..+....|.++.++|
T Consensus 454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLg 500 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLG 500 (655)
T ss_pred HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhh
Confidence 34455555555555555555555555555555555555555555544
No 488
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.07 E-value=92 Score=22.81 Aligned_cols=84 Identities=7% Similarity=-0.188 Sum_probs=48.1
Q ss_pred hhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q 009799 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYD 474 (525)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 474 (525)
+|.+-.-....++|..+.+-.-........+.......+...|+|++| +.. ......|+.--..+.+-.+.|--+
T Consensus 12 lAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~--~~~~~~pdL~p~~AL~a~klGL~~ 86 (116)
T PF09477_consen 12 LALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLL--PQCHCYPDLEPWAALCAWKLGLAS 86 (116)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHH--HTTS--GGGHHHHHHHHHHCT-HH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHh--cccCCCccHHHHHHHHHHhhccHH
Confidence 333334455567777666554333332334455566778888888888 222 233344555566677778888888
Q ss_pred HHHHHHHHH
Q 009799 475 KALETYQEG 483 (525)
Q Consensus 475 ~A~~~~~~a 483 (525)
++...+.+.
T Consensus 87 ~~e~~l~rl 95 (116)
T PF09477_consen 87 ALESRLTRL 95 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888743
No 489
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.96 E-value=2.2e+02 Score=26.78 Aligned_cols=56 Identities=14% Similarity=0.015 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCc-----hhHHHHHHHHH--HhhcccHHHHHHHHHH
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPD-----NHVLYSNRSAA--HASLHNYADALADAKK 61 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~--~~~~g~~~~A~~~~~~ 61 (525)
..++..+++.++|..|...|+.++...++ ....+..+..+ ++..-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34566788888888888888888877542 12333344333 3556677777777765
No 490
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=50.93 E-value=39 Score=18.66 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHhc
Q 009799 472 EYDKALETYQEGLK 485 (525)
Q Consensus 472 ~~~~A~~~~~~a~~ 485 (525)
+.++|+.+|+++.+
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 35666666666644
No 491
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.34 E-value=2.1e+02 Score=26.06 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.7
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
.+++.+.+..|.+.++ .+.|.+.+.+...
T Consensus 104 ~ea~~~kaeYycqigD----kena~~~~~~t~~ 132 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGD----KENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHHhcc----HHHHHHHHHHHHH
Confidence 6788888888999988 9999988887766
No 492
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=48.44 E-value=29 Score=23.73 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhc
Q 009799 16 GDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVE 64 (525)
Q Consensus 16 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 64 (525)
+.|+.|....++++..+. .|+.++|+..|++++.
T Consensus 3 ~~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHH
Confidence 456677777777766553 2555555555555543
No 493
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=48.21 E-value=61 Score=24.60 Aligned_cols=37 Identities=11% Similarity=-0.059 Sum_probs=22.4
Q ss_pred HHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 45 AHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 45 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
.++..-+.+.|...|+.+++.+|++..++..+....-
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 3444445577777777777777777777766655543
No 494
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.73 E-value=2.2e+02 Score=25.90 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
....+++...|..|.+.|+-+.|.+.+.+..+..-. -.-....+|.+|....-..+.++-.+..++...+.
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDW--- 177 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDW--- 177 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCh---
Confidence 345778899999999999999999998887665321 22344566777776666666666666666654432
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (525)
...-+.-...|.......+ +.+|-.+|-.++.....
T Consensus 178 -eRrNRlKvY~Gly~msvR~----Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 178 -ERRNRLKVYQGLYCMSVRN----FKEAADLFLDSVSTFTS 213 (393)
T ss_pred -hhhhhHHHHHHHHHHHHHh----HHHHHHHHHHHcccccc
Confidence 1112333444555555556 88888888877765544
No 495
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=47.20 E-value=1.2e+02 Score=23.11 Aligned_cols=49 Identities=16% Similarity=0.025 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYL 295 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 295 (525)
.+..+.+..+-..++..-+.+.|..+|.++++..|++..++..+....-
T Consensus 73 DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 73 DEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 3455566666666777778889999999999999998887776655443
No 496
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=46.96 E-value=4.3e+02 Score=29.02 Aligned_cols=82 Identities=15% Similarity=0.070 Sum_probs=43.5
Q ss_pred hhHHHhcCChhHHHHHHHHHHh----------cCCCCHHHH---HHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHH
Q 009799 396 GNEFFKQQKYPEAIQHYTESLR----------RNPKDPRTY---SNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTR 462 (525)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~al~----------~~~~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 462 (525)
|.+|...|+.++|+..|+.+.. +.+.-.... ..|+.-+...+++-+|-+.....+.. |...-
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~~~av---- 1033 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-PEEAV---- 1033 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-HHHHH----
Confidence 5556667777777777765431 122222222 45566666777777777666655432 22111
Q ss_pred HHHHHHHhcCHHHHHHHHHHHh
Q 009799 463 KGAIQFFLKEYDKALETYQEGL 484 (525)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~ 484 (525)
..+.+-..|++|+..-..+-
T Consensus 1034 --~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1034 --ALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred --HHHhhHhHHHHHHHHHHhcc
Confidence 23344455666665554443
No 497
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=45.52 E-value=46 Score=26.05 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=15.8
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHhccCCCCHHH
Q 009799 462 RKGAIQFFLK-EYDKALETYQEGLKHDPQNQEL 493 (525)
Q Consensus 462 ~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~ 493 (525)
.+|..+...| +.++|..+|-+|+...|+-.+.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHH
Confidence 3444555555 4555555555555555543333
No 498
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=45.33 E-value=27 Score=23.58 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHH
Q 009799 1 MADEAKAKGNAAFSSGDYEAAVRHFTE 27 (525)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~ 27 (525)
||..|+.-|.-++..|++..|+.++.=
T Consensus 34 mA~~Y~~D~~~fl~~gD~v~Ala~~sY 60 (75)
T PF04010_consen 34 MAESYLEDGKYFLEKGDYVNALACFSY 60 (75)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 567788888888888888888877654
No 499
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.24 E-value=1.4e+02 Score=22.79 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=52.9
Q ss_pred cCHHHHHHHHHHHHHccccChh--hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHH
Q 009799 298 GKYEECIKDCDKAVERGRELRS--DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAK 375 (525)
Q Consensus 298 ~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~ 375 (525)
+.-..-...+++++....++.. .......+|...+.. ...+...|..+....
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~----------~~~~~~if~~l~~~~---------------- 93 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL----------SSDPREIFKFLYSKG---------------- 93 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT----------BSHHHHHHHHHHHHT----------------
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH----------ccCHHHHHHHHHHcC----------------
Confidence 3444555667777665443321 111223444444432 445666666555422
Q ss_pred HHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHH
Q 009799 376 KELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (525)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 416 (525)
+....+..|...|..+...|++++|.++|+.++
T Consensus 94 --------IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 94 --------IGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --------TSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 556778899999999999999999999999875
No 500
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=45.12 E-value=2.4e+02 Score=25.58 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHH
Q 009799 268 KAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEP 347 (525)
Q Consensus 268 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (525)
.-+..+++-....|+..++.+..|...+..|+|..|-.++-....+.++..... +...|..++. -.-+.+ |+.
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~--lsalwGKlAS-EIL~qn----Wd~ 185 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNY--LSALWGKLAS-EILTQN----WDG 185 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhh--HHHHHHHHHH-HHHHhh----HHH
Confidence 445555555666788889999999999999999999988776666554432211 1333433332 223334 888
Q ss_pred HHHHHHHHHh
Q 009799 348 AIETFQKALT 357 (525)
Q Consensus 348 A~~~~~~~~~ 357 (525)
|++.+.+.-+
T Consensus 186 A~edL~rLre 195 (432)
T KOG2758|consen 186 ALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHH
Confidence 8887776654
Done!