Query 009799
Match_columns 525
No_of_seqs 955 out of 1537
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 13:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-45 4.8E-50 347.6 41.5 378 6-506 3-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-40 8.8E-45 311.7 39.2 347 3-472 34-388 (388)
3 3ieg_A DNAJ homolog subfamily 100.0 1.6E-39 5.4E-44 303.1 43.2 335 2-507 3-356 (359)
4 2gw1_A Mitochondrial precursor 100.0 1.7E-39 5.8E-44 318.3 38.7 447 2-502 6-494 (514)
5 2y4t_A DNAJ homolog subfamily 100.0 1.8E-38 6.1E-43 305.5 41.5 335 2-507 26-379 (450)
6 2xpi_A Anaphase-promoting comp 100.0 4E-38 1.4E-42 314.4 43.8 452 3-519 85-578 (597)
7 3fp2_A TPR repeat-containing p 100.0 1.2E-38 3.9E-43 314.1 38.1 415 2-498 25-503 (537)
8 2xpi_A Anaphase-promoting comp 100.0 1.4E-38 4.8E-43 317.6 38.8 444 3-502 118-595 (597)
9 4g1t_A Interferon-induced prot 100.0 5.3E-36 1.8E-40 290.1 33.7 369 2-497 51-470 (472)
10 2gw1_A Mitochondrial precursor 100.0 2.5E-35 8.7E-40 288.7 34.9 426 35-519 5-477 (514)
11 3fp2_A TPR repeat-containing p 100.0 2.6E-35 8.9E-40 290.2 32.8 425 18-519 3-490 (537)
12 3hym_B Cell division cycle pro 100.0 1.9E-34 6.6E-39 265.3 32.5 299 25-506 11-320 (330)
13 2y4t_A DNAJ homolog subfamily 100.0 2.6E-34 9.1E-39 276.4 33.7 320 17-519 7-357 (450)
14 3ieg_A DNAJ homolog subfamily 100.0 1.8E-33 6E-38 262.1 35.2 302 35-519 2-334 (359)
15 3hym_B Cell division cycle pro 100.0 7E-34 2.4E-38 261.6 31.3 298 3-474 23-322 (330)
16 1fch_A Peroxisomal targeting s 100.0 2E-33 7E-38 262.7 26.6 316 13-515 12-354 (368)
17 1fch_A Peroxisomal targeting s 100.0 1.4E-33 4.7E-38 263.9 25.1 295 10-486 33-359 (368)
18 4g1t_A Interferon-induced prot 100.0 5.4E-31 1.9E-35 254.9 34.8 361 16-521 25-460 (472)
19 4eqf_A PEX5-related protein; a 100.0 4.5E-32 1.5E-36 253.2 24.5 229 253-511 102-347 (365)
20 4eqf_A PEX5-related protein; a 100.0 4.5E-32 1.5E-36 253.2 22.1 282 22-486 47-356 (365)
21 2h6f_A Protein farnesyltransfe 100.0 6.1E-31 2.1E-35 242.4 25.2 214 254-505 135-367 (382)
22 2h6f_A Protein farnesyltransfe 100.0 5.7E-31 2E-35 242.6 23.6 260 28-470 89-366 (382)
23 3uq3_A Heat shock protein STI1 100.0 6.5E-30 2.2E-34 226.2 28.9 250 247-501 2-257 (258)
24 3cv0_A Peroxisome targeting si 100.0 1.8E-30 6E-35 238.5 23.2 163 291-490 144-319 (327)
25 3cv0_A Peroxisome targeting si 100.0 1.9E-30 6.3E-35 238.4 23.3 282 3-454 22-317 (327)
26 2xm6_A Protein corresponding t 100.0 8.6E-28 3E-32 232.8 40.2 365 2-503 39-452 (490)
27 3u4t_A TPR repeat-containing p 100.0 7.1E-29 2.4E-33 221.4 24.1 256 36-505 3-269 (272)
28 2ooe_A Cleavage stimulation fa 100.0 6.5E-27 2.2E-31 229.0 40.0 422 3-490 14-496 (530)
29 3mkr_A Coatomer subunit epsilo 100.0 2.2E-27 7.7E-32 212.0 30.9 279 9-480 6-288 (291)
30 2pl2_A Hypothetical conserved 100.0 3.3E-28 1.1E-32 208.0 23.1 200 247-484 2-212 (217)
31 3sf4_A G-protein-signaling mod 100.0 1E-28 3.6E-33 234.0 20.3 309 2-475 9-365 (406)
32 3mkr_A Coatomer subunit epsilo 100.0 5.9E-27 2E-31 209.2 30.2 204 251-496 66-274 (291)
33 3uq3_A Heat shock protein STI1 100.0 6.5E-28 2.2E-32 213.3 23.6 169 253-466 82-256 (258)
34 3u4t_A TPR repeat-containing p 100.0 1.1E-27 3.7E-32 213.7 23.8 200 3-357 4-207 (272)
35 3sf4_A G-protein-signaling mod 100.0 1.8E-27 6.1E-32 225.5 25.4 312 34-510 7-366 (406)
36 2xm6_A Protein corresponding t 100.0 5.5E-25 1.9E-29 213.1 40.8 366 20-520 25-432 (490)
37 2pl2_A Hypothetical conserved 100.0 3.2E-27 1.1E-31 201.9 21.5 199 281-517 2-211 (217)
38 2ooe_A Cleavage stimulation fa 100.0 2.8E-24 9.7E-29 210.3 40.7 385 3-457 47-497 (530)
39 4a1s_A PINS, partner of inscut 99.9 1.2E-26 4.1E-31 220.1 22.2 294 33-491 45-377 (411)
40 4a1s_A PINS, partner of inscut 99.9 3.1E-26 1.1E-30 217.3 23.0 289 2-455 48-375 (411)
41 3ro2_A PINS homolog, G-protein 99.9 2.6E-26 8.7E-31 211.6 21.7 210 3-357 6-251 (338)
42 2q7f_A YRRB protein; TPR, prot 99.9 4.2E-26 1.4E-30 199.7 21.7 221 248-505 21-241 (243)
43 3e4b_A ALGK; tetratricopeptide 99.9 3.7E-25 1.3E-29 210.8 29.0 359 6-504 7-403 (452)
44 3ro2_A PINS homolog, G-protein 99.9 6.3E-26 2.2E-30 208.9 22.8 291 35-490 4-336 (338)
45 3vtx_A MAMA; tetratricopeptide 99.9 6.4E-25 2.2E-29 183.0 21.9 173 283-492 4-176 (184)
46 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.3E-25 4.5E-30 200.5 18.7 183 256-480 83-269 (275)
47 2ho1_A Type 4 fimbrial biogene 99.9 5.4E-24 1.9E-28 187.3 27.8 217 246-497 32-249 (252)
48 2vq2_A PILW, putative fimbrial 99.9 7.5E-24 2.6E-28 182.9 27.8 217 246-497 4-222 (225)
49 3vtx_A MAMA; tetratricopeptide 99.9 1.6E-24 5.5E-29 180.5 21.0 174 248-458 3-176 (184)
50 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.4E-24 4.9E-29 193.8 21.6 225 248-514 41-269 (275)
51 2q7f_A YRRB protein; TPR, prot 99.9 1.4E-24 4.9E-29 189.9 20.7 219 2-403 23-241 (243)
52 1ouv_A Conserved hypothetical 99.9 2.5E-23 8.6E-28 185.3 28.4 158 253-455 77-254 (273)
53 3e4b_A ALGK; tetratricopeptide 99.9 9.6E-25 3.3E-29 207.9 19.7 354 2-489 35-424 (452)
54 4abn_A Tetratricopeptide repea 99.9 5.9E-24 2E-28 203.8 25.3 210 265-512 83-313 (474)
55 3ulq_A Response regulator aspa 99.9 3.3E-24 1.1E-28 201.0 22.0 214 248-488 141-370 (383)
56 1ouv_A Conserved hypothetical 99.9 7.4E-23 2.5E-27 182.2 28.9 195 253-494 41-259 (273)
57 2ond_A Cleavage stimulation fa 99.9 1.7E-23 5.7E-28 189.5 24.4 195 255-498 104-304 (308)
58 4i17_A Hypothetical protein; T 99.9 1.2E-23 4E-28 181.9 21.7 211 249-503 6-226 (228)
59 2ond_A Cleavage stimulation fa 99.9 2.1E-23 7.1E-28 188.9 23.3 256 19-465 33-305 (308)
60 4i17_A Hypothetical protein; T 99.9 2.8E-23 9.5E-28 179.6 21.7 182 2-322 7-218 (228)
61 4abn_A Tetratricopeptide repea 99.9 5.2E-24 1.8E-28 204.2 18.5 209 237-483 89-318 (474)
62 2ho1_A Type 4 fimbrial biogene 99.9 9.2E-23 3.1E-27 179.4 24.5 72 32-103 32-104 (252)
63 2vq2_A PILW, putative fimbrial 99.9 2.6E-22 8.9E-27 173.2 26.2 72 32-103 4-75 (225)
64 3ulq_A Response regulator aspa 99.9 2.5E-23 8.5E-28 195.0 20.2 250 250-524 103-372 (383)
65 4gyw_A UDP-N-acetylglucosamine 99.9 2.2E-23 7.5E-28 207.0 17.9 173 245-454 4-176 (723)
66 3qky_A Outer membrane assembly 99.9 3.2E-22 1.1E-26 176.7 23.6 206 2-340 15-247 (261)
67 3qky_A Outer membrane assembly 99.9 5.9E-22 2E-26 175.0 22.3 217 246-513 11-254 (261)
68 4gyw_A UDP-N-acetylglucosamine 99.9 1.6E-22 5.5E-27 200.8 20.2 174 279-489 4-177 (723)
69 1hz4_A MALT regulatory protein 99.9 1E-20 3.4E-25 176.7 29.3 319 2-491 14-354 (373)
70 3nf1_A KLC 1, kinesin light ch 99.9 4E-22 1.4E-26 181.3 18.3 260 2-455 27-310 (311)
71 3nf1_A KLC 1, kinesin light ch 99.9 2.1E-22 7.2E-27 183.1 15.0 272 31-489 22-310 (311)
72 3q15_A PSP28, response regulat 99.9 2.6E-21 9E-26 180.8 22.7 213 248-487 139-366 (378)
73 4ga2_A E3 SUMO-protein ligase 99.9 2.4E-22 8.1E-27 160.3 11.4 146 331-506 3-149 (150)
74 1qqe_A Vesicular transport pro 99.9 3.3E-21 1.1E-25 172.8 20.0 229 249-502 36-285 (292)
75 1xi4_A Clathrin heavy chain; a 99.9 1.4E-19 5E-24 182.9 33.4 340 7-503 1054-1413(1630)
76 2yhc_A BAMD, UPF0169 lipoprote 99.9 1.4E-20 4.9E-25 161.7 22.9 188 2-318 4-218 (225)
77 3dra_A Protein farnesyltransfe 99.9 2.4E-20 8.3E-25 164.6 24.6 82 384-465 215-301 (306)
78 1hz4_A MALT regulatory protein 99.9 3.3E-20 1.1E-24 173.2 27.1 286 36-488 14-324 (373)
79 3dra_A Protein farnesyltransfe 99.9 1.9E-20 6.7E-25 165.2 23.6 208 257-501 74-303 (306)
80 3urz_A Uncharacterized protein 99.9 2.8E-21 9.6E-26 163.7 17.4 116 2-117 4-135 (208)
81 1qqe_A Vesicular transport pro 99.9 2E-21 6.9E-26 174.2 16.9 238 17-433 32-284 (292)
82 4gco_A Protein STI-1; structur 99.9 2.8E-21 9.7E-26 148.6 14.2 120 382-501 6-125 (126)
83 3q15_A PSP28, response regulat 99.9 4E-21 1.4E-25 179.5 17.3 248 249-521 100-366 (378)
84 2pzi_A Probable serine/threoni 99.9 5.2E-21 1.8E-25 191.5 19.1 184 248-472 392-583 (681)
85 1xi4_A Clathrin heavy chain; a 99.9 5.3E-19 1.8E-23 178.8 32.9 244 249-511 1104-1375(1630)
86 3urz_A Uncharacterized protein 99.9 2.5E-20 8.5E-25 157.9 19.5 195 249-500 3-199 (208)
87 2yhc_A BAMD, UPF0169 lipoprote 99.9 4.7E-20 1.6E-24 158.5 21.5 211 249-492 3-219 (225)
88 2pzi_A Probable serine/threoni 99.9 4E-21 1.4E-25 192.3 16.0 188 278-506 388-583 (681)
89 1b89_A Protein (clathrin heavy 99.8 1.4E-21 4.8E-26 177.4 9.3 309 11-502 12-339 (449)
90 3as5_A MAMA; tetratricopeptide 99.8 6.6E-20 2.3E-24 152.8 18.3 173 248-491 6-178 (186)
91 4gco_A Protein STI-1; structur 99.8 1.4E-20 4.6E-25 144.8 12.7 113 2-114 13-125 (126)
92 3as5_A MAMA; tetratricopeptide 99.8 1E-19 3.5E-24 151.6 19.2 152 234-422 26-177 (186)
93 4ga2_A E3 SUMO-protein ligase 99.8 6.7E-21 2.3E-25 151.8 11.0 147 289-472 2-149 (150)
94 3gyz_A Chaperone protein IPGC; 99.8 3.7E-20 1.3E-24 146.3 12.5 126 366-491 13-138 (151)
95 4e6h_A MRNA 3'-END-processing 99.8 3.2E-16 1.1E-20 153.8 42.0 442 18-495 48-579 (679)
96 3dss_A Geranylgeranyl transfer 99.8 1E-17 3.5E-22 148.4 28.4 167 9-321 36-230 (331)
97 3edt_B KLC 2, kinesin light ch 99.8 1.2E-19 4E-24 162.4 15.7 165 13-315 12-200 (283)
98 3dss_A Geranylgeranyl transfer 99.8 2.8E-17 9.5E-22 145.6 29.8 262 47-501 40-319 (331)
99 3edt_B KLC 2, kinesin light ch 99.8 1.3E-18 4.5E-23 155.5 18.0 236 229-487 14-282 (283)
100 2vgx_A Chaperone SYCD; alterna 99.8 3.8E-19 1.3E-23 141.1 11.8 133 377-509 9-141 (148)
101 1b89_A Protein (clathrin heavy 99.8 3.1E-20 1.1E-24 168.7 5.5 228 257-511 68-302 (449)
102 3q7a_A Farnesyltransferase alp 99.8 3.6E-17 1.2E-21 145.4 24.9 203 266-501 105-347 (349)
103 2r5s_A Uncharacterized protein 99.8 1.1E-18 3.6E-23 143.7 13.0 166 247-450 3-171 (176)
104 2r5s_A Uncharacterized protein 99.8 1.8E-18 6.3E-23 142.3 14.2 168 280-485 2-172 (176)
105 2xcb_A PCRH, regulatory protei 99.8 1.6E-18 5.5E-23 136.9 11.8 132 376-507 5-136 (142)
106 3qou_A Protein YBBN; thioredox 99.8 1.4E-17 4.7E-22 148.5 18.8 100 385-484 181-282 (287)
107 4f3v_A ESX-1 secretion system 99.8 5.4E-18 1.9E-22 145.6 15.4 219 248-499 5-249 (282)
108 2ifu_A Gamma-SNAP; membrane fu 99.8 5.8E-18 2E-22 152.8 16.4 193 258-478 44-253 (307)
109 3q7a_A Farnesyltransferase alp 99.8 6.1E-17 2.1E-21 143.9 21.5 234 247-517 51-328 (349)
110 3rjv_A Putative SEL1 repeat pr 99.8 9.4E-17 3.2E-21 136.1 21.0 190 267-499 3-208 (212)
111 3qou_A Protein YBBN; thioredox 99.8 1.9E-17 6.5E-22 147.6 17.4 169 246-451 113-283 (287)
112 2ifu_A Gamma-SNAP; membrane fu 99.8 4.2E-18 1.4E-22 153.8 13.2 178 287-491 39-228 (307)
113 2vsy_A XCC0866; transferase, g 99.8 2.5E-17 8.6E-22 162.4 19.7 165 263-464 2-169 (568)
114 3upv_A Heat shock protein STI1 99.8 1.7E-17 5.7E-22 128.2 14.2 119 386-504 1-125 (126)
115 2vsy_A XCC0866; transferase, g 99.8 1.5E-17 5.2E-22 164.0 17.4 165 297-498 2-169 (568)
116 3gyz_A Chaperone protein IPGC; 99.8 6.2E-18 2.1E-22 133.5 11.5 103 2-104 36-138 (151)
117 3upv_A Heat shock protein STI1 99.7 2.5E-17 8.6E-22 127.2 12.6 115 2-116 4-124 (126)
118 2c2l_A CHIP, carboxy terminus 99.7 4.5E-18 1.5E-22 151.1 9.4 104 2-105 4-107 (281)
119 2hr2_A Hypothetical protein; a 99.7 3.9E-18 1.3E-22 132.1 7.7 118 1-118 10-150 (159)
120 4f3v_A ESX-1 secretion system 99.7 1.9E-17 6.6E-22 142.2 12.4 232 37-429 8-247 (282)
121 1p5q_A FKBP52, FK506-binding p 99.7 3.4E-19 1.2E-23 162.6 1.0 203 260-486 75-294 (336)
122 4gcn_A Protein STI-1; structur 99.7 1.2E-16 4.3E-21 122.9 14.5 119 246-368 4-122 (127)
123 3sz7_A HSC70 cochaperone (SGT) 99.7 9.8E-17 3.3E-21 130.3 14.0 127 384-510 6-134 (164)
124 4e6h_A MRNA 3'-END-processing 99.7 1.8E-13 6.3E-18 134.4 38.4 440 3-459 67-577 (679)
125 4gcn_A Protein STI-1; structur 99.7 1.3E-16 4.4E-21 122.8 12.4 112 387-499 6-124 (127)
126 1p5q_A FKBP52, FK506-binding p 99.7 1.5E-17 5E-22 151.7 8.3 138 374-511 132-284 (336)
127 2hr2_A Hypothetical protein; a 99.7 3.7E-17 1.3E-21 126.6 9.2 119 388-506 10-151 (159)
128 2vgx_A Chaperone SYCD; alterna 99.7 1.4E-16 4.7E-21 126.3 12.8 115 3-117 22-136 (148)
129 2fbn_A 70 kDa peptidylprolyl i 99.7 6.4E-17 2.2E-21 136.0 10.8 128 384-511 33-176 (198)
130 2fo7_A Synthetic consensus TPR 99.7 7.8E-16 2.7E-20 120.4 16.3 135 326-490 2-136 (136)
131 1dce_A Protein (RAB geranylger 99.7 1.1E-16 3.8E-21 155.2 13.6 179 262-475 40-244 (567)
132 3rkv_A Putative peptidylprolyl 99.7 2.9E-16 1E-20 127.1 13.8 126 387-512 9-153 (162)
133 2e2e_A Formate-dependent nitri 99.7 2.5E-16 8.7E-21 129.7 13.6 131 368-498 23-156 (177)
134 2xcb_A PCRH, regulatory protei 99.7 1.8E-16 6.3E-21 125.0 12.1 115 3-117 19-133 (142)
135 2c2l_A CHIP, carboxy terminus 99.7 7.3E-17 2.5E-21 143.2 10.7 196 249-486 3-199 (281)
136 1hxi_A PEX5, peroxisome target 99.7 2.1E-16 7.3E-21 120.3 11.7 103 3-105 18-120 (121)
137 3rkv_A Putative peptidylprolyl 99.7 1.7E-16 5.9E-21 128.5 11.8 119 2-120 11-148 (162)
138 2lni_A Stress-induced-phosphop 99.7 5.9E-16 2E-20 120.8 14.2 123 384-506 11-133 (133)
139 3sz7_A HSC70 cochaperone (SGT) 99.7 3.6E-16 1.2E-20 126.9 13.1 119 2-120 11-131 (164)
140 2vyi_A SGTA protein; chaperone 99.7 9.3E-16 3.2E-20 119.2 14.9 124 384-507 7-130 (131)
141 3q49_B STIP1 homology and U bo 99.7 6.1E-16 2.1E-20 121.4 13.9 124 384-507 4-132 (137)
142 3rjv_A Putative SEL1 repeat pr 99.7 7.4E-15 2.5E-19 124.4 20.4 189 234-465 4-208 (212)
143 2qfc_A PLCR protein; TPR, HTH, 99.7 2.4E-15 8.2E-20 134.8 18.2 180 283-487 74-267 (293)
144 3mv2_B Coatomer subunit epsilo 99.7 2.3E-14 8E-19 124.8 23.5 187 269-497 85-293 (310)
145 1hxi_A PEX5, peroxisome target 99.7 7.1E-16 2.4E-20 117.4 12.1 103 390-492 18-120 (121)
146 3mv2_B Coatomer subunit epsilo 99.7 3E-14 1E-18 124.1 23.3 173 252-460 102-290 (310)
147 2lni_A Stress-induced-phosphop 99.7 1.6E-15 5.5E-20 118.3 13.1 117 2-118 16-132 (133)
148 1hh8_A P67PHOX, NCF-2, neutrop 99.6 5.4E-15 1.8E-19 125.9 17.2 135 325-492 6-156 (213)
149 2qfc_A PLCR protein; TPR, HTH, 99.6 1.7E-14 5.9E-19 129.2 20.9 181 244-452 69-266 (293)
150 2fo7_A Synthetic consensus TPR 99.6 1.2E-14 4.2E-19 113.5 17.6 135 285-456 2-136 (136)
151 1elw_A TPR1-domain of HOP; HOP 99.6 7.8E-15 2.7E-19 111.6 16.0 115 388-502 3-117 (118)
152 1na0_A Designed protein CTPR3; 99.6 8.3E-15 2.8E-19 112.7 16.2 121 385-505 4-125 (125)
153 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.2E-16 3.9E-21 152.2 6.5 128 384-511 263-405 (457)
154 2fbn_A 70 kDa peptidylprolyl i 99.6 4.4E-16 1.5E-20 130.8 9.1 97 389-485 88-185 (198)
155 1elw_A TPR1-domain of HOP; HOP 99.6 4.6E-15 1.6E-19 112.9 13.9 113 2-114 4-116 (118)
156 2xev_A YBGF; tetratricopeptide 99.6 3.1E-15 1.1E-19 116.0 12.7 116 1-116 1-122 (129)
157 1a17_A Serine/threonine protei 99.6 1.5E-14 5.2E-19 117.6 17.4 133 324-486 12-146 (166)
158 1dce_A Protein (RAB geranylger 99.6 8.3E-15 2.9E-19 142.1 18.4 183 300-509 45-244 (567)
159 3u3w_A Transcriptional activat 99.6 5.1E-15 1.8E-19 132.7 15.7 175 287-486 78-266 (293)
160 2vyi_A SGTA protein; chaperone 99.6 6.3E-15 2.2E-19 114.4 14.1 119 2-120 12-130 (131)
161 3u3w_A Transcriptional activat 99.6 1.6E-14 5.3E-19 129.5 18.3 181 248-452 73-266 (293)
162 1a17_A Serine/threonine protei 99.6 8.6E-15 2.9E-19 119.1 15.1 129 388-516 12-142 (166)
163 3q49_B STIP1 homology and U bo 99.6 3.2E-15 1.1E-19 117.3 11.8 117 2-118 9-130 (137)
164 2dba_A Smooth muscle cell asso 99.6 9E-15 3.1E-19 116.4 14.2 119 384-502 23-144 (148)
165 1elr_A TPR2A-domain of HOP; HO 99.6 1E-14 3.6E-19 113.2 13.4 121 387-508 2-129 (131)
166 1hh8_A P67PHOX, NCF-2, neutrop 99.6 6.4E-14 2.2E-18 119.1 19.1 152 248-423 4-155 (213)
167 2xev_A YBGF; tetratricopeptide 99.6 1.6E-14 5.6E-19 111.8 13.8 116 390-505 3-124 (129)
168 1zu2_A Mitochondrial import re 99.6 4.8E-15 1.6E-19 114.5 9.2 99 402-500 15-134 (158)
169 1na0_A Designed protein CTPR3; 99.6 3E-14 1E-18 109.5 13.9 116 2-117 9-124 (125)
170 2uy1_A Cleavage stimulation fa 99.6 6.8E-11 2.3E-15 113.0 39.9 364 2-485 14-412 (493)
171 2dba_A Smooth muscle cell asso 99.6 2.7E-14 9.2E-19 113.6 14.0 113 2-114 28-143 (148)
172 2kck_A TPR repeat; tetratricop 99.6 1E-14 3.5E-19 109.7 10.8 107 385-491 2-111 (112)
173 2e2e_A Formate-dependent nitri 99.6 1.9E-14 6.6E-19 118.3 13.3 128 260-424 20-150 (177)
174 1zu2_A Mitochondrial import re 99.6 4.8E-15 1.7E-19 114.5 8.6 102 13-114 13-135 (158)
175 3k9i_A BH0479 protein; putativ 99.6 7.8E-15 2.7E-19 111.2 8.6 109 401-509 2-113 (117)
176 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3.4E-15 1.2E-19 142.1 7.6 196 265-484 201-413 (457)
177 2if4_A ATFKBP42; FKBP-like, al 99.6 6.2E-15 2.1E-19 134.4 8.5 112 2-113 179-307 (338)
178 3gw4_A Uncharacterized protein 99.6 1.1E-13 3.7E-18 116.7 15.6 179 12-333 2-195 (203)
179 1elr_A TPR2A-domain of HOP; HO 99.5 5.2E-14 1.8E-18 109.2 11.8 118 2-120 4-128 (131)
180 4b4t_Q 26S proteasome regulato 99.5 7.1E-14 2.4E-18 133.2 15.1 212 3-358 5-245 (434)
181 1ihg_A Cyclophilin 40; ppiase 99.5 4.9E-14 1.7E-18 129.7 13.0 123 389-511 223-361 (370)
182 2kck_A TPR repeat; tetratricop 99.5 5.1E-14 1.8E-18 105.8 10.3 103 2-104 6-111 (112)
183 3k9i_A BH0479 protein; putativ 99.5 1.6E-14 5.4E-19 109.5 7.4 102 14-115 2-106 (117)
184 4b4t_Q 26S proteasome regulato 99.5 1.6E-13 5.4E-18 130.7 16.2 210 252-486 6-245 (434)
185 1ihg_A Cyclophilin 40; ppiase 99.5 7.4E-14 2.5E-18 128.5 13.2 119 2-120 223-357 (370)
186 2if4_A ATFKBP42; FKBP-like, al 99.5 3.4E-14 1.2E-18 129.5 10.6 155 325-492 179-334 (338)
187 1wao_1 Serine/threonine protei 99.5 1.7E-14 5.8E-19 137.8 8.3 136 325-490 6-154 (477)
188 1wao_1 Serine/threonine protei 99.5 3.1E-14 1.1E-18 135.9 10.0 128 388-515 5-134 (477)
189 3gw4_A Uncharacterized protein 99.5 9.8E-13 3.4E-17 110.8 15.3 168 260-452 2-176 (203)
190 2uy1_A Cleavage stimulation fa 99.5 1.4E-10 4.8E-15 110.8 31.0 367 14-510 6-403 (493)
191 2kat_A Uncharacterized protein 99.4 1.4E-12 4.9E-17 98.3 11.5 102 406-507 2-105 (115)
192 2l6j_A TPR repeat-containing p 99.4 1.3E-13 4.4E-18 103.5 5.6 95 2-96 4-104 (111)
193 3ro3_A PINS homolog, G-protein 99.4 1.1E-12 3.6E-17 106.1 10.1 142 324-489 8-161 (164)
194 3ro3_A PINS homolog, G-protein 99.4 2.8E-12 9.5E-17 103.6 11.0 148 247-419 6-159 (164)
195 2l6j_A TPR repeat-containing p 99.4 5.7E-13 2E-17 99.9 5.9 90 424-513 5-100 (111)
196 2kat_A Uncharacterized protein 99.3 7.6E-12 2.6E-16 94.3 10.6 101 19-119 2-104 (115)
197 2kc7_A BFR218_protein; tetratr 99.3 3.5E-12 1.2E-16 93.2 7.0 92 5-104 3-95 (99)
198 1na3_A Designed protein CTPR2; 99.3 2E-11 6.7E-16 87.5 10.6 82 388-469 8-89 (91)
199 1na3_A Designed protein CTPR2; 99.3 2.4E-11 8.2E-16 87.1 11.1 85 421-505 7-91 (91)
200 3ma5_A Tetratricopeptide repea 99.3 3.3E-11 1.1E-15 87.9 10.2 89 418-506 2-92 (100)
201 2kc7_A BFR218_protein; tetratr 99.2 1.8E-11 6E-16 89.4 6.7 91 393-491 4-95 (99)
202 3ma5_A Tetratricopeptide repea 99.2 6.3E-11 2.2E-15 86.4 8.6 88 31-118 2-91 (100)
203 1klx_A Cysteine rich protein B 99.2 1.1E-09 3.8E-14 84.9 14.9 98 395-498 31-136 (138)
204 3u64_A Protein TP_0956; tetrat 99.2 1.8E-09 6E-14 91.5 16.3 108 383-490 146-273 (301)
205 1pc2_A Mitochondria fission pr 99.0 2.4E-09 8.1E-14 81.7 11.2 102 405-506 14-120 (152)
206 3bee_A Putative YFRE protein; 99.0 3.8E-09 1.3E-13 74.8 10.8 73 419-491 2-77 (93)
207 3n71_A Histone lysine methyltr 99.0 6.3E-10 2.1E-14 105.3 8.9 121 365-485 319-463 (490)
208 3n71_A Histone lysine methyltr 99.0 1.2E-09 4E-14 103.4 10.1 107 345-451 325-463 (490)
209 1klx_A Cysteine rich protein B 99.0 1.3E-08 4.3E-13 79.0 13.7 120 298-464 9-136 (138)
210 3bee_A Putative YFRE protein; 99.0 3.2E-09 1.1E-13 75.2 9.2 74 32-105 2-78 (93)
211 3ly7_A Transcriptional activat 99.0 2.5E-08 8.5E-13 88.6 16.5 121 345-492 215-345 (372)
212 1pc2_A Mitochondria fission pr 98.9 5.8E-09 2E-13 79.6 10.2 103 17-119 13-120 (152)
213 3ly7_A Transcriptional activat 98.9 1.2E-07 4.1E-12 84.2 19.5 155 276-458 186-345 (372)
214 3u64_A Protein TP_0956; tetrat 98.9 9.2E-08 3.1E-12 81.1 16.8 85 372-456 180-273 (301)
215 2v5f_A Prolyl 4-hydroxylase su 98.8 2.6E-08 9E-13 72.7 10.0 76 2-77 5-87 (104)
216 2v5f_A Prolyl 4-hydroxylase su 98.8 5.2E-08 1.8E-12 71.1 11.4 81 423-503 5-92 (104)
217 3qww_A SET and MYND domain-con 98.7 6.9E-08 2.4E-12 89.8 11.2 97 400-496 309-426 (433)
218 3qww_A SET and MYND domain-con 98.7 7.9E-08 2.7E-12 89.4 9.7 104 5-108 301-425 (433)
219 3qwp_A SET and MYND domain-con 98.6 9.1E-08 3.1E-12 89.3 10.0 109 397-505 295-427 (429)
220 1nzn_A CGI-135 protein, fissio 98.6 6.4E-07 2.2E-11 65.6 10.7 102 405-506 17-123 (126)
221 3qwp_A SET and MYND domain-con 98.6 2.6E-07 8.8E-12 86.2 10.7 106 4-109 289-415 (429)
222 1nzn_A CGI-135 protein, fissio 98.5 1.4E-06 4.7E-11 63.9 10.5 102 15-116 14-120 (126)
223 4h7y_A Dual specificity protei 98.3 2.7E-05 9.2E-10 58.2 13.3 112 384-496 8-133 (161)
224 4g26_A Pentatricopeptide repea 98.1 0.00027 9.2E-09 67.5 20.5 183 287-501 29-220 (501)
225 4h7y_A Dual specificity protei 98.1 0.00016 5.4E-09 54.1 13.7 128 278-437 7-141 (161)
226 4g26_A Pentatricopeptide repea 98.1 0.00046 1.6E-08 65.9 20.8 163 253-452 29-204 (501)
227 1y8m_A FIS1; mitochondria, unk 98.1 0.00016 5.6E-09 53.7 13.5 87 420-506 36-126 (144)
228 3ffl_A Anaphase-promoting comp 98.1 1.2E-05 4.1E-10 61.7 7.6 109 4-113 22-164 (167)
229 3o48_A Mitochondria fission 1 98.1 5.9E-05 2E-09 55.3 10.7 85 422-506 39-127 (134)
230 1y8m_A FIS1; mitochondria, unk 97.8 0.00042 1.4E-08 51.6 11.4 97 20-117 24-124 (144)
231 3o48_A Mitochondria fission 1 97.8 0.00048 1.6E-08 50.5 11.6 81 387-467 38-122 (134)
232 3ffl_A Anaphase-promoting comp 97.8 0.00021 7.1E-09 54.9 10.0 110 391-501 22-165 (167)
233 3txn_A 26S proteasome regulato 97.1 0.079 2.7E-06 48.1 19.6 94 393-486 103-210 (394)
234 4gns_B Protein CSD3, chitin bi 96.8 0.049 1.7E-06 54.0 16.6 62 249-310 336-397 (754)
235 3kae_A CDC27, possible protein 96.8 0.12 4E-06 39.6 17.2 96 6-106 37-150 (242)
236 3kae_A CDC27, possible protein 96.7 0.038 1.3E-06 42.2 11.5 105 385-494 29-151 (242)
237 4gns_B Protein CSD3, chitin bi 96.7 0.0098 3.3E-07 58.8 10.9 59 425-483 339-397 (754)
238 4b4t_P 26S proteasome regulato 96.6 0.097 3.3E-06 48.9 16.6 193 263-486 29-247 (445)
239 3txn_A 26S proteasome regulato 96.5 0.44 1.5E-05 43.3 28.0 103 253-359 102-211 (394)
240 2ff4_A Probable regulatory pro 96.5 0.026 9E-07 51.8 12.2 95 4-98 117-233 (388)
241 1zbp_A Hypothetical protein VP 96.3 0.21 7.1E-06 42.0 15.1 62 258-319 5-66 (273)
242 3mkq_A Coatomer beta'-subunit; 96.1 0.45 1.5E-05 48.7 20.2 110 386-506 678-798 (814)
243 1zbp_A Hypothetical protein VP 96.0 0.2 6.9E-06 42.1 13.2 63 44-106 5-67 (273)
244 1ya0_A SMG-7 transcript varian 96.0 0.052 1.8E-06 51.1 11.0 79 391-469 154-232 (497)
245 4b4t_P 26S proteasome regulato 95.8 1.2 4.2E-05 41.5 21.4 106 248-357 135-246 (445)
246 2ff4_A Probable regulatory pro 95.7 0.16 5.5E-06 46.5 12.9 61 425-485 173-233 (388)
247 1ya0_A SMG-7 transcript varian 95.4 0.085 2.9E-06 49.7 10.2 70 367-436 164-233 (497)
248 4b4t_R RPN7, 26S proteasome re 95.3 0.12 4.1E-06 48.1 10.8 103 386-488 128-239 (429)
249 3mkq_B Coatomer subunit alpha; 95.1 0.62 2.1E-05 36.6 12.4 98 368-483 18-115 (177)
250 3mkq_B Coatomer subunit alpha; 95.0 0.45 1.5E-05 37.3 11.5 49 258-311 13-61 (177)
251 4b4t_S RPN3, 26S proteasome re 94.9 1 3.4E-05 42.2 15.3 204 253-491 139-378 (523)
252 4b4t_S RPN3, 26S proteasome re 94.7 0.077 2.6E-06 49.5 7.6 106 384-491 176-304 (523)
253 3spa_A Mtrpol, DNA-directed RN 94.6 0.49 1.7E-05 48.3 13.3 97 389-486 127-230 (1134)
254 2llv_A Heat shock protein STI1 94.3 0.025 8.6E-07 36.7 2.4 63 131-193 5-68 (71)
255 4b4t_R RPN7, 26S proteasome re 93.4 0.36 1.2E-05 44.9 9.6 106 285-419 132-238 (429)
256 3mkq_A Coatomer beta'-subunit; 93.2 0.46 1.6E-05 48.6 11.0 47 259-310 661-707 (814)
257 1qsa_A Protein (soluble lytic 93.1 7 0.00024 38.1 38.2 106 3-119 7-117 (618)
258 1qsa_A Protein (soluble lytic 93.0 7.1 0.00024 38.0 30.1 78 24-105 57-137 (618)
259 3spa_A Mtrpol, DNA-directed RN 92.8 4.2 0.00014 41.8 16.2 105 248-364 125-236 (1134)
260 4fhn_B Nucleoporin NUP120; pro 92.6 12 0.00042 39.8 22.0 56 39-98 815-870 (1139)
261 3lvg_A Clathrin heavy chain 1; 92.6 2.1E-05 7.2E-10 71.4 -19.0 265 34-477 52-324 (624)
262 3lpz_A GET4 (YOR164C homolog); 92.1 5.8 0.0002 34.9 25.2 134 373-506 120-297 (336)
263 2wpv_A GET4, UPF0363 protein Y 92.0 5.8 0.0002 34.6 19.3 77 374-450 119-215 (312)
264 4fhn_B Nucleoporin NUP120; pro 91.9 4.8 0.00017 42.9 16.7 61 388-448 898-963 (1139)
265 4ady_A RPN2, 26S proteasome re 86.7 31 0.0011 35.4 21.5 62 251-312 491-552 (963)
266 2lnm_A Protein TIC 40, chlorop 86.6 0.32 1.1E-05 30.5 1.8 55 140-194 3-57 (62)
267 3ax2_A Mitochondrial import re 84.2 2.9 9.8E-05 27.0 5.4 39 461-499 21-59 (73)
268 4gq2_M Nucleoporin NUP120; bet 83.2 17 0.00059 37.7 13.8 95 394-492 815-933 (950)
269 1wy6_A Hypothetical protein ST 78.9 15 0.0005 27.3 8.0 57 258-314 99-155 (172)
270 2vkj_A TM1634; membrane protei 78.4 6.9 0.00023 25.9 5.6 28 4-31 55-82 (106)
271 3lvg_A Clathrin heavy chain 1; 78.3 0.00037 1.3E-08 63.5 -19.4 117 387-508 197-321 (624)
272 3ax2_A Mitochondrial import re 78.1 5.3 0.00018 25.7 5.0 28 7-34 22-49 (73)
273 3lpz_A GET4 (YOR164C homolog); 76.7 39 0.0013 29.7 23.3 19 259-277 196-214 (336)
274 4ady_A RPN2, 26S proteasome re 75.7 77 0.0026 32.6 27.2 243 250-505 376-640 (963)
275 2ijq_A Hypothetical protein; s 74.7 16 0.00054 28.1 7.7 60 5-64 35-103 (161)
276 2w2u_A Hypothetical P60 katani 73.6 4.2 0.00014 27.1 3.9 25 5-29 22-46 (83)
277 2v6y_A AAA family ATPase, P60 71.3 5.1 0.00017 26.8 3.9 25 5-29 14-38 (83)
278 1om2_A Protein (mitochondrial 70.5 5.4 0.00019 27.3 3.8 31 462-492 25-55 (95)
279 4gq2_M Nucleoporin NUP120; bet 69.7 1.1E+02 0.0038 31.8 17.9 53 41-97 815-867 (950)
280 3t5v_B Nuclear mRNA export pro 69.3 15 0.00051 34.1 7.8 62 394-455 181-253 (455)
281 1wy6_A Hypothetical protein ST 69.3 32 0.0011 25.5 13.9 55 398-452 100-154 (172)
282 3re2_A Predicted protein; meni 68.9 42 0.0015 29.5 9.7 65 387-451 253-324 (472)
283 4a5x_A MITD1, MIT domain-conta 67.0 26 0.00088 23.5 7.1 27 4-30 18-44 (86)
284 2crb_A Nuclear receptor bindin 66.3 8.8 0.0003 25.8 4.0 24 5-28 18-41 (97)
285 2cfu_A SDSA1; SDS-hydrolase, l 65.9 7.5 0.00026 38.3 5.5 47 4-50 451-497 (658)
286 3t5x_A PCI domain-containing p 65.8 18 0.00062 29.2 6.9 37 248-284 12-48 (203)
287 3esl_A Checkpoint serine/threo 64.8 47 0.0016 26.6 8.7 69 385-454 76-146 (202)
288 2v6x_A Vacuolar protein sortin 60.9 10 0.00035 25.4 3.9 25 5-29 16-40 (85)
289 3u84_A Menin; MLL, JUND, ledgf 60.7 69 0.0024 28.9 9.6 59 442-500 298-367 (550)
290 4gq4_A Menin; tumor suppressor 59.3 1E+02 0.0035 27.9 10.5 27 457-483 303-329 (489)
291 1om2_A Protein (mitochondrial 59.3 11 0.00036 25.8 3.6 26 42-67 26-51 (95)
292 2rpa_A Katanin P60 ATPase-cont 58.0 9.1 0.00031 25.1 3.0 26 5-30 15-40 (78)
293 3t5x_A PCI domain-containing p 57.7 22 0.00076 28.7 6.0 52 423-474 14-70 (203)
294 1wfd_A Hypothetical protein 15 56.6 44 0.0015 22.8 7.1 27 4-30 17-43 (93)
295 2cfu_A SDSA1; SDS-hydrolase, l 56.1 26 0.0009 34.5 7.4 47 460-506 452-498 (658)
296 2wpv_A GET4, UPF0363 protein Y 53.7 1.1E+02 0.0038 26.6 18.4 64 421-484 132-215 (312)
297 2cpt_A SKD1 protein, vacuolar 53.1 13 0.00045 26.7 3.5 12 18-29 15-26 (117)
298 2ijq_A Hypothetical protein; s 52.6 76 0.0026 24.3 8.9 63 252-314 34-105 (161)
299 2rpa_A Katanin P60 ATPase-cont 51.4 21 0.0007 23.4 3.8 25 427-451 16-40 (78)
300 3t5v_B Nuclear mRNA export pro 49.9 36 0.0012 31.6 6.7 59 364-422 185-254 (455)
301 2cwy_A Hypothetical protein TT 48.2 41 0.0014 23.0 5.2 29 6-34 5-33 (94)
302 2pmr_A Uncharacterized protein 47.9 17 0.00058 24.4 3.1 24 2-25 39-62 (87)
303 2oo2_A Hypothetical protein AF 47.0 18 0.00062 24.2 3.1 27 1-27 34-60 (86)
304 4aez_C MAD3, mitotic spindle c 46.5 62 0.0021 26.4 6.8 80 349-451 97-178 (223)
305 2crb_A Nuclear receptor bindin 44.5 71 0.0024 21.6 7.4 34 320-357 10-43 (97)
306 2v6y_A AAA family ATPase, P60 43.1 48 0.0016 22.0 4.8 16 297-312 24-39 (83)
307 2yhe_A SEC-alkyl sulfatase; hy 49.2 5 0.00017 39.5 0.0 47 4-50 463-509 (668)
308 2npu_A FKBP12-rapamycin comple 42.6 58 0.002 23.7 5.4 75 428-505 45-124 (126)
309 3bu8_A Telomeric repeat-bindin 38.7 1.5E+02 0.0052 23.9 7.6 45 395-439 120-164 (235)
310 4b4t_O 26S proteasome regulato 37.8 2.3E+02 0.0079 25.6 11.0 97 257-357 83-197 (393)
311 2qx5_A Nucleoporin NIC96; mRNA 34.6 3.4E+02 0.012 26.6 15.6 21 255-275 448-468 (661)
312 2v6x_A Vacuolar protein sortin 33.9 73 0.0025 21.1 4.7 25 253-277 16-40 (85)
313 2ynq_A ESSB; membrane protein, 33.2 1.6E+02 0.0055 22.4 8.2 87 4-96 10-99 (161)
314 2p58_C Putative type III secre 33.1 1.2E+02 0.0042 21.0 9.5 82 395-482 13-94 (116)
315 4fm3_A Uncharacterized hypothe 33.0 1.1E+02 0.0037 21.0 5.2 27 2-28 34-60 (98)
316 3snx_A SUSD homolog, putative 32.1 2.7E+02 0.0092 25.8 9.8 50 369-418 165-220 (460)
317 1wfd_A Hypothetical protein 15 31.8 1.2E+02 0.0041 20.6 5.9 12 346-357 13-24 (93)
318 4b4t_O 26S proteasome regulato 31.6 2.5E+02 0.0086 25.3 9.3 89 397-485 84-197 (393)
319 2uwj_G Type III export protein 31.4 1.3E+02 0.0045 20.8 8.1 75 401-481 18-92 (115)
320 2vkj_A TM1634; membrane protei 30.9 1.2E+02 0.0041 20.2 5.2 33 248-280 51-83 (106)
321 3bu8_A Telomeric repeat-bindin 29.9 2.2E+02 0.0076 23.0 8.4 62 405-466 88-157 (235)
322 2cpt_A SKD1 protein, vacuolar 27.9 89 0.003 22.4 4.5 19 257-275 25-43 (117)
323 2cwy_A Hypothetical protein TT 27.1 1.5E+02 0.0051 20.1 7.2 61 290-357 7-67 (94)
324 3bqo_A Telomeric repeat-bindin 25.5 62 0.0021 25.7 3.4 43 43-85 124-166 (211)
325 2w2u_A Hypothetical P60 katani 25.1 1.5E+02 0.0052 19.5 8.3 31 248-278 17-47 (83)
326 2npu_A FKBP12-rapamycin comple 25.0 1.9E+02 0.0066 21.0 5.7 19 44-62 48-66 (126)
327 3uzd_A 14-3-3 protein gamma; s 23.9 3.1E+02 0.011 22.8 18.5 58 253-310 7-66 (248)
328 3bqo_A Telomeric repeat-bindin 23.7 70 0.0024 25.4 3.4 44 394-437 122-165 (211)
329 3snx_A SUSD homolog, putative 23.5 73 0.0025 29.7 4.3 33 67-99 188-220 (460)
330 2llw_A Heat shock protein STI1 23.4 17 0.00059 23.3 0.0 50 143-192 14-63 (71)
331 2br9_A 14-3-3E, 14-3-3 protein 23.3 3.1E+02 0.011 22.5 18.2 57 252-308 7-65 (234)
332 2e2a_A Protein (enzyme IIA); h 23.1 1.1E+02 0.0037 21.5 4.0 25 4-28 22-46 (105)
333 3esl_A Checkpoint serine/threo 22.9 2.9E+02 0.01 22.1 11.7 71 245-316 75-147 (202)
334 1wcr_A PTS system, N, N'-diace 22.8 1.1E+02 0.0038 21.3 4.0 25 4-28 20-44 (103)
335 3myv_A SUSD superfamily protei 21.9 1.1E+02 0.0038 28.3 5.3 51 49-99 168-219 (454)
336 3mcx_A SUSD superfamily protei 21.4 1.4E+02 0.0048 27.9 5.8 32 68-99 200-231 (477)
337 1o9d_A 14-3-3-like protein C; 21.3 3.7E+02 0.013 22.6 17.5 59 251-309 9-71 (260)
338 4a5x_A MITD1, MIT domain-conta 21.0 1.9E+02 0.0065 19.2 7.9 31 249-279 15-45 (86)
339 2yhe_A SEC-alkyl sulfatase; hy 26.4 21 0.0007 35.2 0.0 49 460-508 464-512 (668)
340 3dza_A Uncharacterized putativ 20.6 3E+02 0.01 21.7 6.4 61 4-64 110-178 (191)
341 3k1s_A PTS system, cellobiose- 20.5 1.3E+02 0.0044 21.2 4.0 25 4-28 24-48 (109)
342 3myv_A SUSD superfamily protei 20.5 2E+02 0.0069 26.6 6.6 28 424-451 191-218 (454)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.4e-45 Score=347.61 Aligned_cols=378 Identities=20% Similarity=0.247 Sum_probs=345.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 85 (525)
+.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHH
Q 009799 86 YIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMK 165 (525)
Q Consensus 86 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (525)
+++|+..|+++++.+|++..++..++.++...|+. +.+...+.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~------------------------------------~~A~~~~~~ 126 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM------------------------------------EGAVQAYVS 126 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCS------------------------------------SHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCH------------------------------------HHHHHHHHH
Confidence 99999999999999999999999999999998876 445555555
Q ss_pred HHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHH
Q 009799 166 DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (525)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (525)
.+..+|+
T Consensus 127 al~~~p~------------------------------------------------------------------------- 133 (388)
T 1w3b_A 127 ALQYNPD------------------------------------------------------------------------- 133 (388)
T ss_dssp HHHHCTT-------------------------------------------------------------------------
T ss_pred HHHhCCC-------------------------------------------------------------------------
Confidence 5555555
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
...++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|++ .
T Consensus 134 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~ 203 (388)
T 1w3b_A 134 ---LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------L 203 (388)
T ss_dssp ---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred ---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------H
Confidence 444566778888889999999999999999999999999999999999999999999999999998887 5
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGN 397 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 397 (525)
.++..+|.++...++ +++|+..|++++...|.. ..+...|++++|+..+++++..+|.++.++..+|.
T Consensus 204 ~~~~~lg~~~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 204 DAYINLGNVLKEARI----FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHHHHTTTC----TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 667777777777777 999999999999888863 24566788999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q 009799 398 EFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (525)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 477 (525)
++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 478 ETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 478 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
..|+++++++|+++.++..++.++..+|+
T Consensus 360 ~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 360 MHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999988763
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.6e-40 Score=311.66 Aligned_cols=347 Identities=21% Similarity=0.254 Sum_probs=310.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
..+..+|..++..|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
.|++++|+..|+++++.+|++..++..++.++...|+. +.+...
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~------------------------------------~~A~~~ 157 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL------------------------------------EEAKAC 157 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCH------------------------------------HHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH------------------------------------HHHHHH
Confidence 99999999999999999999999999999998887765 344444
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
+.+.+...|+
T Consensus 158 ~~~al~~~p~---------------------------------------------------------------------- 167 (388)
T 1w3b_A 158 YLKAIETQPN---------------------------------------------------------------------- 167 (388)
T ss_dssp HHHHHHHCTT----------------------------------------------------------------------
T ss_pred HHHHHHhCCC----------------------------------------------------------------------
Confidence 5555554444
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
.+.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|++
T Consensus 168 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----- 236 (388)
T 1w3b_A 168 ------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH----- 236 (388)
T ss_dssp ------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-----
T ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-----
Confidence 455677788888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHH
Q 009799 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPKIADEERE 394 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 394 (525)
..++..+|.++...++ +++|+..|++++...|.. ..+...|++++|+..+++++...|.++.++..
T Consensus 237 --~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 310 (388)
T 1w3b_A 237 --AVVHGNLACVYYEQGL----IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp --HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --HHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 5566677777777777 888888888888887763 24566788888888888888899999999999
Q ss_pred hhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988874
No 3
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.6e-39 Score=303.08 Aligned_cols=335 Identities=19% Similarity=0.324 Sum_probs=306.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++.++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCC---CcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchH
Q 009799 82 GLQDYIEAVNSYKKGLDIDP---NNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQD 158 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
..|++++|+..|+++++.+| ++..++..++.+.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------------------------------- 118 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------------------------------------------- 118 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH--------------------------------------------
Confidence 99999999999999999999 7777766655442
Q ss_pred HHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhH
Q 009799 159 DFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTE 238 (525)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (525)
T Consensus 119 -------------------------------------------------------------------------------- 118 (359)
T 3ieg_A 119 -------------------------------------------------------------------------------- 118 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccCh
Q 009799 239 EEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR 318 (525)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 318 (525)
....+..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+
T Consensus 119 ----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~- 187 (359)
T 3ieg_A 119 ----------EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN- 187 (359)
T ss_dssp ----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC-
T ss_pred ----------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-
Confidence 223355678899999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHH-------
Q 009799 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADE------- 391 (525)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 391 (525)
..++..+|.++...++ +++|+..+++++.. .|....+
T Consensus 188 ------~~~~~~la~~~~~~~~----~~~A~~~~~~a~~~--------------------------~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 188 ------TEAFYKISTLYYQLGD----HELSLSEVRECLKL--------------------------DQDHKRCFAHYKQV 231 (359)
T ss_dssp ------HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHhh--------------------------CccchHHHHHHHHH
Confidence 5677778888888888 99999999999994 4444443
Q ss_pred -----HHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHH
Q 009799 392 -----EREKGNEFFKQQKYPEAIQHYTESLRRNPKDPR----TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTR 462 (525)
Q Consensus 392 -----~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 462 (525)
...+|.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 345588999999999999999999999999874 46679999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009799 463 KGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (525)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 507 (525)
+|.++...|++++|+.+|+++++++|+++.++..++.+...+++.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999888764
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-39 Score=318.35 Aligned_cols=447 Identities=17% Similarity=0.163 Sum_probs=337.6
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++.++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCC----------------C---CcccccccCchhh
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPA----------------D---NPFGSAFAGPEMW 142 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~~ 142 (525)
.+|++++|+..|++++..+|.+......................... . .......+.....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999999999999775544333222222111110000000 0 0000000000000
Q ss_pred ----hhcccCCCcccc--cchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCC
Q 009799 143 ----AKLTADPTTRSY--LDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPE 216 (525)
Q Consensus 143 ----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (525)
......+..... ..+.............-. ..++...+...+........ . .....|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~A~~~~~~~~~~~~-------~---~~~~~~- 227 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKR------SPESYDKADESFTKAARLFE-------E---QLDKNN- 227 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSC------CTTHHHHHHHHHHHHHHHHH-------H---HTTTST-
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhh------hhccHHHHHHHHHHHHHHhh-------h---hhccCc-
Confidence 011111000000 001111111111111000 01111111111111000000 0 000000
Q ss_pred CchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 009799 217 TSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE 296 (525)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 296 (525)
......|..+.++..+|.++...|++++|+..+++++..+|. ..++..+|.++..
T Consensus 228 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~ 282 (514)
T 2gw1_A 228 ------------------------EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD 282 (514)
T ss_dssp ------------------------TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT
T ss_pred ------------------------cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH
Confidence 000123678899999999999999999999999999999999 9999999999999
Q ss_pred hcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHHh
Q 009799 297 MGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKL 368 (525)
Q Consensus 297 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~ 368 (525)
.|++++|+..+++++...|.+ ..++..+|.++...++ +++|+..|++++...|.. ..+...
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNN-------SSVYYHRGQMNFILQN----YDQAGKDFDKAKELDPENIFPYIQLACLAYRE 351 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTC-------THHHHHHHHHHHHTTC----TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHhhcCcCC-------HHHHHHHHHHHHHhCC----HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence 999999999999999999988 4566777777777777 999999999999988763 244567
Q ss_pred chHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH---cCCc
Q 009799 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPR------TYSNRAACYTK---LGAM 439 (525)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~---~~~~ 439 (525)
|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++...|+++. ++..+|.++.. .|++
T Consensus 352 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 99999999999999999999999999999999999999999999999999988755 99999999999 9999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009799 440 PEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (525)
Q Consensus 440 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 502 (525)
++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+.....
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887765544
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.8e-38 Score=305.51 Aligned_cols=335 Identities=18% Similarity=0.326 Sum_probs=301.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++.++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcH---HHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNE---ALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQD 158 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
..|++++|+..|+++++.+|++. .++..++.++
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------------------------------- 141 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD-------------------------------------------- 141 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH--------------------------------------------
Confidence 99999999999999999999887 6665554442
Q ss_pred HHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhH
Q 009799 159 DFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTE 238 (525)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (525)
T Consensus 142 -------------------------------------------------------------------------------- 141 (450)
T 2y4t_A 142 -------------------------------------------------------------------------------- 141 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccCh
Q 009799 239 EEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR 318 (525)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 318 (525)
....+..+|.++...|++++|+..|++++...|.++.++..+|.+|...|++++|+..|++++...|++
T Consensus 142 ----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 210 (450)
T 2y4t_A 142 ----------EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN- 210 (450)
T ss_dssp ----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC-
T ss_pred ----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-
Confidence 223355678899999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHH----
Q 009799 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEERE---- 394 (525)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 394 (525)
..++..+|.++...|+ +++|+..|++++. ..|++...+..
T Consensus 211 ------~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~--------------------------~~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 211 ------TEAFYKISTLYYQLGD----HELSLSEVRECLK--------------------------LDQDHKRCFAHYKQV 254 (450)
T ss_dssp ------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCCChHHHHHHHHHH
Confidence 5677777888888888 9999999999998 45555555444
Q ss_pred --------hhhHHHhcCChhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHH
Q 009799 395 --------KGNEFFKQQKYPEAIQHYTESLRRNPKDPR----TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTR 462 (525)
Q Consensus 395 --------l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 462 (525)
+|.++...|++++|+..|+++++..|+++. ++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 499999999999999999999999999854 78999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009799 463 KGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (525)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 507 (525)
+|.++...|++++|+.+|+++++++|+++.++..++.+...+++.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999887766543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-38 Score=314.41 Aligned_cols=452 Identities=11% Similarity=-0.002 Sum_probs=350.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
..|...+..+...|++++|+..|++++...|++ ..++.+|.++...|++++|+..|++++.. |.++.++..+|.+|..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHH
Confidence 457788999999999999999999999999964 77889999999999999999999999765 6788999999999999
Q ss_pred hhhHHHHHHHHHHhhccC----------------CCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcc
Q 009799 83 LQDYIEAVNSYKKGLDID----------------PNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLT 146 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~----------------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
.|++++|+..|++..... |.+..++..++.++...|+.
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------------------- 216 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF-------------------------- 216 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH--------------------------
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH--------------------------
Confidence 999999999999744333 33478899999999998876
Q ss_pred cCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHH-------HHHH---HHhhhccCCCCCC-ccccccccCCCCC
Q 009799 147 ADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQ-------ALGV---LLNVKFKGPTGGD-DVEMQDEDAPKGP 215 (525)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (525)
+.+...+.+.+..+|.+...+...+.... .... +............ ........+.
T Consensus 217 ----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 283 (597)
T 2xpi_A 217 ----------DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS--- 283 (597)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT---
T ss_pred ----------HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc---
Confidence 66777888888888887766543322100 0000 0000000000000 0000000000
Q ss_pred CCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 009799 216 ETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYL 295 (525)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 295 (525)
..+...+++......... +.....+..+|..+...|++++|+..|++++..+|.+..++..++.++.
T Consensus 284 ------------~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 284 ------------HEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350 (597)
T ss_dssp ------------THHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred ------------CcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH
Confidence 000001111111111111 3567788889999999999999999999999999999889999999999
Q ss_pred HhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHH
Q 009799 296 EMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKK 367 (525)
Q Consensus 296 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~ 367 (525)
..|++++|+..+++++...|++ ..++..+|.++...|+ +++|+..|++++...|.. ..+..
T Consensus 351 ~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRHPEK-------AVTWLAVGIYYLCVNK----ISEARRYFSKSSTMDPQFGPAWIGFAHSFAI 419 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTS-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHhcc----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999888877 5666677777777777 999999999998877763 24567
Q ss_pred hchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 009799 368 LNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDAD 447 (525)
Q Consensus 368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 447 (525)
.|++++|+..+++++...|.+..++..+|.++...|++++|+..|+++++..|.++.+|..+|.++...|++++|+..|+
T Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 78899999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc------CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 448 KCIEL------DPTF-SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 448 ~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
++++. +|++ ..++..+|.++...|++++|+..|+++++++|+++.++..++.++...|+..+|...+++.++
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99887 5654 678899999999999999999999999999999999999999999999988888776666554
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.2e-38 Score=314.15 Aligned_cols=415 Identities=19% Similarity=0.209 Sum_probs=314.6
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++.++.+|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++.+|+++.+++.+|.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhH----HhHHHHHhhcccCCCC--------CCCC-cccccccCchhhhhccc-
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGL----ADAKAAASASFRSRSP--------PADN-PFGSAFAGPEMWAKLTA- 147 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l----~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~- 147 (525)
..|++++|+..|+ ++..+|+....+... ................ .+.. .....+........+..
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999999996 888888876543210 0000001000000000 0000 00000000000000000
Q ss_pred --CCCcccc------------------------cchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCC
Q 009799 148 --DPTTRSY------------------------LDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGG 201 (525)
Q Consensus 148 --~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (525)
....... ....+...+.+.+...|.+...+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~------------------------ 239 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR------------------------ 239 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH------------------------
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhh------------------------
Confidence 0000000 00122222223333333322221
Q ss_pred CccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Q 009799 202 DDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDD 281 (525)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 281 (525)
...+.++..+|.++...|++++|+..|++++..+|
T Consensus 240 ---------------------------------------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~ 274 (537)
T 3fp2_A 240 ---------------------------------------------ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP 274 (537)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 23466788889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCC
Q 009799 282 EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRN 361 (525)
Q Consensus 282 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 361 (525)
+ ..++..+|.++...|++++|+..+++++...|++ ..++..+|.++...++ +++|+..|++++...|.
T Consensus 275 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 275 T-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-------PPTYYHRGQMYFILQD----YKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHCTT
T ss_pred C-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHhCCC
Confidence 9 8999999999999999999999999999999987 5667777888888887 99999999999998876
Q ss_pred h--------hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHH------HHH
Q 009799 362 P--------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPR------TYS 427 (525)
Q Consensus 362 ~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~ 427 (525)
. .++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|+++. .+.
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 3 35667899999999999999999999999999999999999999999999999998876543 356
Q ss_pred HHHHHHHHc----------CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009799 428 NRAACYTKL----------GAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (525)
Q Consensus 428 ~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 497 (525)
.+|.++... |++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++++....+
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 778999999 9999999999999999999999999999999999999999999999999999998876644
Q ss_pred H
Q 009799 498 R 498 (525)
Q Consensus 498 ~ 498 (525)
.
T Consensus 503 ~ 503 (537)
T 3fp2_A 503 T 503 (537)
T ss_dssp H
T ss_pred h
Confidence 3
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-38 Score=317.64 Aligned_cols=444 Identities=14% Similarity=0.058 Sum_probs=356.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccC----------------
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELK---------------- 66 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 66 (525)
..++.+|..+...|++++|+..|++++.. |.++.++..+|.+|.+.|++++|+..|++.....
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc
Confidence 35678999999999999999999999765 5678999999999999999999999999744333
Q ss_pred CCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcc
Q 009799 67 PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLT 146 (525)
Q Consensus 67 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
|.+..+|..+|.+|...|++++|+..|+++++.+|++..++..++.++...+....... ....+..............
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV--LKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHH--HHSCTHHHHGGGHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHH--HhcCCcccccchHHHHHHH
Confidence 33488999999999999999999999999999999999988877654322111100000 0000000000000000000
Q ss_pred cCCCcccccchHHHHHHHHHHhhC---CCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhcc
Q 009799 147 ADPTTRSYLDQDDFRNMMKDIQRN---PNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETR 223 (525)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (525)
.......+...+.+......+... |.+...+...+..+...+.+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------------------- 321 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF--------------------------------- 321 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH---------------------------------
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH---------------------------------
Confidence 111123344455555555555443 44555555555554444432
Q ss_pred CCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHH
Q 009799 224 KPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEEC 303 (525)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A 303 (525)
.+++..........|....++..++.++...|++++|+..+++++...|++..++..+|.+|...|++++|
T Consensus 322 ---------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 322 ---------IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp ---------HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------HHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHH
Confidence 34445566666666777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHHhchHHHHH
Q 009799 304 IKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAK 375 (525)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~ 375 (525)
+..|+++++..|.+ ..++..++.++...|+ +++|+..|++++...|.. ..+...|++++|+
T Consensus 393 ~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 393 RRYFSKSSTMDPQF-------GPAWIGFAHSFAIEGE----HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999987 5667777888888888 999999999999988753 3566789999999
Q ss_pred HHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHHcCCchHHHHHHHH
Q 009799 376 KELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR------NPKD-PRTYSNRAACYTKLGAMPEGLKDADK 448 (525)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (525)
..+++++...|.++.++..+|.++...|++++|+..|+++++. +|++ ..+|..+|.++...|++++|+..|++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 5654 78999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009799 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (525)
Q Consensus 449 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 502 (525)
+++.+|+++.++..+|.+|...|++++|..+|+++++++|+++.++..++.++.
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988764
No 9
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.3e-36 Score=290.05 Aligned_cols=369 Identities=15% Similarity=0.057 Sum_probs=243.9
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhcc---------CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccC------
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISL---------SPDNHVLYSNRSAAHASLHNYADALADAKKTVELK------ 66 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 66 (525)
+..+..+|.++..+|++++|+..|++++++ +|....+|.++|.+|..+|++++|+.++++++++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456778999999999999999999999876 56677889999999999999999999999998763
Q ss_pred --CCCHHHHHHHHHHHhhh--hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhh
Q 009799 67 --PDWSKGYSRLGAAHLGL--QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMW 142 (525)
Q Consensus 67 --p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (525)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.+....+...+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-------------------- 190 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-------------------- 190 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC--------------------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH--------------------
Confidence 45678888888877665 589999999999999999999999999888776655411
Q ss_pred hhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhc
Q 009799 143 AKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEET 222 (525)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (525)
...++..+.+++..+|.+..
T Consensus 191 -------------~~~al~~~~~al~l~p~~~~----------------------------------------------- 210 (472)
T 4g1t_A 191 -------------SQNAIDPLRQAIRLNPDNQY----------------------------------------------- 210 (472)
T ss_dssp -------------CCCTHHHHHHHHHHCSSCHH-----------------------------------------------
T ss_pred -------------HHHHHHHHHHHhhcCCcchH-----------------------------------------------
Confidence 12345555566666665443
Q ss_pred cCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHH----HHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 009799 223 RKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNA----AYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMG 298 (525)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~ 298 (525)
++..+|.. +...+++++|+.++++++..+|.++.++..+|.+|...|
T Consensus 211 -----------------------------~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 211 -----------------------------LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp -----------------------------HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred -----------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC
Confidence 33344433 334578899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHH
Q 009799 299 KYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKEL 378 (525)
Q Consensus 299 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 378 (525)
++++|+..++++++..|++ +.++..+|.+|..... ...+... ..........+.++.|+..+
T Consensus 262 ~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~y~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 262 EPDKAIELLKKALEYIPNN-------AYLHCQIGCCYRAKVF----QVMNLRE-------NGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp CHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHHH----HHHHC-------------CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHHHHH----HhhhHHH-------HHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999998 4555555555443322 1111111 01111222334455666666
Q ss_pred HHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHH---HHHHHHHH-HHHcCCchHHHHHHHHHHhcCC
Q 009799 379 EQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPR---TYSNRAAC-YTKLGAMPEGLKDADKCIELDP 454 (525)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~-~~~~~~~~~A~~~~~~al~~~p 454 (525)
++++..+|....++..+|.++...|++++|+.+|+++++..|++.. ++..+|.+ ....|++++|+..|+++++++|
T Consensus 324 ~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred HHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 6666677777777777777777777777777777777776665432 34455543 3456677777777777766655
Q ss_pred C------------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009799 455 T------------------------FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (525)
Q Consensus 455 ~------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 497 (525)
+ ++.++..+|.+|..+|++++|+++|++++++.|.+|.+...+
T Consensus 404 ~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 404 KSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 4 444555555555555555555555555555555555544444
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=288.68 Aligned_cols=426 Identities=16% Similarity=0.130 Sum_probs=337.8
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHH
Q 009799 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (525)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (525)
.+..++.+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhh
Q 009799 115 AAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (525)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (525)
...|++ +.+...+.+.+...|.+.....................
T Consensus 84 ~~~g~~------------------------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (514)
T 2gw1_A 84 EGLGKF------------------------------------ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLK 127 (514)
T ss_dssp HHTTCH------------------------------------HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHT
T ss_pred HHHhhH------------------------------------HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHH
Confidence 999887 66777777888777755443322111111111110000
Q ss_pred ccC---CCCCC-------ccc-cccccCCCCCCCchhh--ccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 009799 195 FKG---PTGGD-------DVE-MQDEDAPKGPETSKEE--TRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAY 261 (525)
Q Consensus 195 ~~~---~~~~~-------~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (525)
... ..... ... ......+..|...... ....... .....+ ..|.....+...|..++
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~ 197 (514)
T 2gw1_A 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE--LTFANY--------DESNEADKELMNGLSNL 197 (514)
T ss_dssp TC---------------------------CCCCHHHHHHHHTTSCCC--CCCSSC--------CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH--HHHHHh--------cCCcHHHHHHHHHHHHH
Confidence 000 00000 000 0000000000000000 0000000 000000 01345788899999888
Q ss_pred h---cccHHHHHHHHHHHhh-----c--C-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHH
Q 009799 262 K---KKEFEKAIEHYSSALE-----L--D-------DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (525)
Q Consensus 262 ~---~~~~~~A~~~~~~~l~-----~--~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 324 (525)
. .|++++|+..|++++. . + |.++.++..+|.++...|++++|+..+++++...|+
T Consensus 198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------- 269 (514)
T 2gw1_A 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-------- 269 (514)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--------
T ss_pred HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--------
Confidence 7 9999999999999999 5 4 455678999999999999999999999999999987
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhh
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKG 396 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 396 (525)
..++..+|.++...++ +++|+..+++++...|.. .++...|++++|+..+++++...|.++.++..+|
T Consensus 270 ~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 345 (514)
T 2gw1_A 270 VNSYIYMALIMADRND----STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345 (514)
T ss_dssp HHHHHHHHHHHHTSSC----CTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC----HHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHH
Confidence 3556777777777777 999999999999988763 3556789999999999999999999999999999
Q ss_pred hHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH-
Q 009799 397 NEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK------GYTRKGAIQFF- 469 (525)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~- 469 (525)
.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|+++. ++..+|.++..
T Consensus 346 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 346 CLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999988855 99999999999
Q ss_pred --hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 470 --LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 470 --~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
.|++++|+..|++++..+|+++.++..++.++...|+..+|...++++.+
T Consensus 426 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988877666554
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.6e-35 Score=290.22 Aligned_cols=425 Identities=16% Similarity=0.155 Sum_probs=325.1
Q ss_pred HHHHHHHHHHHhccCCc----hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHH
Q 009799 18 YEAAVRHFTEAISLSPD----NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSY 93 (525)
Q Consensus 18 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 93 (525)
.+.+...+..+....|. .+..++.+|.+++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 82 (537)
T 3fp2_A 3 HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFT 82 (537)
T ss_dssp -----CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCCchHHhhcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34455556666666554 46889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCc
Q 009799 94 KKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNN 173 (525)
Q Consensus 94 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (525)
+++++.+|++..++..++.++...|+. +.+...+ +.+...|+.
T Consensus 83 ~~al~~~p~~~~~~~~la~~~~~~g~~------------------------------------~~A~~~~-~~~~~~~~~ 125 (537)
T 3fp2_A 83 TKALEIKPDHSKALLRRASANESLGNF------------------------------------TDAMFDL-SVLSLNGDF 125 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCH------------------------------------HHHHHHH-HHHC-----
T ss_pred HHHHhcCCchHHHHHHHHHHHHHcCCH------------------------------------HHHHHHH-HHHhcCCCC
Confidence 999999999999999999999999887 3444444 345555544
Q ss_pred hhHH----hhHHHHHHHHHHHHhhhccCCCCCCc----------------cccccccCCCCCCCchhhccCCCCCCCCCC
Q 009799 174 LNLY----LKDQRVMQALGVLLNVKFKGPTGGDD----------------VEMQDEDAPKGPETSKEETRKPESEPEPEP 233 (525)
Q Consensus 174 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (525)
.... ............+.......+..... ....+.......+
T Consensus 126 ~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 188 (537)
T 3fp2_A 126 DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN----------------- 188 (537)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS-----------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc-----------------
Confidence 3322 22222222333222222111000000 0000000000000
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHH--------HHHHHhcccHHHHHHHHHHHhhcCCCCHH-------HHHHHHHHHHHhc
Q 009799 234 MELTEEEKEAKERKEKALKEKEA--------GNAAYKKKEFEKAIEHYSSALELDDEDIS-------YLTNRAAVYLEMG 298 (525)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~~ 298 (525)
..+........+ +......|++++|+..|+++++.+|+++. ++..+|.++...|
T Consensus 189 -----------~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 189 -----------YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp -----------SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----------cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 000011111222 33444557999999999999999999865 5778889999999
Q ss_pred CHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHHhch
Q 009799 299 KYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNE 370 (525)
Q Consensus 299 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~ 370 (525)
++++|+..+++++...|+ ..++..+|.++...++ +++|+..|++++...|.. .++...|+
T Consensus 258 ~~~~A~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPT--------PNSYIFLALTLADKEN----SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp CHHHHHHHHHHHHHHCCC--------HHHHHHHHHHTCCSSC----CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhcCCC--------chHHHHHHHHHHHhcC----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999987 3567778888888888 999999999999998873 35667899
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 371 AEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 371 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
+++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHH------HHHHHHHHHHHh----------cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCCh
Q 009799 451 ELDPTFSK------GYTRKGAIQFFL----------KEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSP 514 (525)
Q Consensus 451 ~~~p~~~~------~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 514 (525)
+.+|++.. .+..+|.++... |++++|+.+|+++++.+|+++.++..++.++..+|+..+|...+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 98776543 366778999999 99999999999999999999999999999999999999888776
Q ss_pred HHHHH
Q 009799 515 EELKE 519 (525)
Q Consensus 515 ~~~~~ 519 (525)
+++.+
T Consensus 486 ~~al~ 490 (537)
T 3fp2_A 486 EDSAI 490 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66555
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=265.34 Aligned_cols=299 Identities=15% Similarity=0.111 Sum_probs=266.3
Q ss_pred HHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcH
Q 009799 25 FTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 104 (525)
Q Consensus 25 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 104 (525)
....+...|+++..+..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 44556667888899999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred HHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHH
Q 009799 105 ALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVM 184 (525)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (525)
.+
T Consensus 91 ~~------------------------------------------------------------------------------ 92 (330)
T 3hym_B 91 VS------------------------------------------------------------------------------ 92 (330)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 54
Q ss_pred HHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcc
Q 009799 185 QALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKK 264 (525)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (525)
+..+|.++...|
T Consensus 93 --------------------------------------------------------------------~~~l~~~~~~~~ 104 (330)
T 3hym_B 93 --------------------------------------------------------------------WFAVGCYYLMVG 104 (330)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHSC
T ss_pred --------------------------------------------------------------------HHHHHHHHHHhh
Confidence 344577778888
Q ss_pred -cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhccc
Q 009799 265 -EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK 343 (525)
Q Consensus 265 -~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|+.. ..+..+|.++...++
T Consensus 105 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~~~~~~~~--- 174 (330)
T 3hym_B 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH-------LPMLYIGLEYGLTNN--- 174 (330)
T ss_dssp SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS-------HHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH-------HHHHHHHHHHHHHhh---
Confidence 999999999999999999999999999999999999999999999999999874 455567777777777
Q ss_pred chHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcC----
Q 009799 344 DYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN---- 419 (525)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---- 419 (525)
+++|+..+++++. ..|.++.++..+|.++...|++++|+..++++++..
T Consensus 175 -~~~A~~~~~~al~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 175 -SKLAERFFSQALS--------------------------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp -HHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred -HHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998 788899999999999999999999999999999876
Q ss_pred -----CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHH
Q 009799 420 -----PKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (525)
Q Consensus 420 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 494 (525)
|..+.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hhhh
Q 009799 495 DGVRRCVQ-QINK 506 (525)
Q Consensus 495 ~~l~~~~~-~~~~ 506 (525)
..++.++. ..|+
T Consensus 308 ~~l~~~~~~~~g~ 320 (330)
T 3hym_B 308 TMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhCc
Confidence 99999985 4443
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.6e-34 Score=276.42 Aligned_cols=320 Identities=14% Similarity=0.113 Sum_probs=280.1
Q ss_pred CHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 009799 17 DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKG 96 (525)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 96 (525)
....+...+.+++..+|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhH
Q 009799 97 LDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNL 176 (525)
Q Consensus 97 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (525)
++.+|++..+
T Consensus 87 l~~~p~~~~~---------------------------------------------------------------------- 96 (450)
T 2y4t_A 87 IQLKMDFTAA---------------------------------------------------------------------- 96 (450)
T ss_dssp HHHCTTCHHH----------------------------------------------------------------------
T ss_pred HhcCCCcHHH----------------------------------------------------------------------
Confidence 9998876544
Q ss_pred HhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHH
Q 009799 177 YLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEA 256 (525)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (525)
+..+
T Consensus 97 ----------------------------------------------------------------------------~~~l 100 (450)
T 2y4t_A 97 ----------------------------------------------------------------------------RLQR 100 (450)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 3455
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcCCCCH---HHHHHH------------HHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 257 GNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNR------------AAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
|.++...|++++|+..|++++..+|++. .++..+ |.++...|++++|+..+++++...|.+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---- 176 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD---- 176 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Confidence 7778888999999999999999999988 776655 666999999999999999999999988
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (525)
..++..+|.++...|+ +++|+..|++++. .+|.++.++..+|.++..
T Consensus 177 ---~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 177 ---AELRELRAECFIKEGE----PRKAISDLKAASK--------------------------LKNDNTEAFYKISTLYYQ 223 (450)
T ss_dssp ---HHHHHHHHHHHHHTTC----GGGGHHHHHHHHH--------------------------HHCSCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHCCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHH
Confidence 5677778888888888 9999999999998 788899999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHcCCchHHHHHHHHHHhcCCCCHH----HHHHHHH
Q 009799 402 QQKYPEAIQHYTESLRRNPKDPRTYSNR------------AACYTKLGAMPEGLKDADKCIELDPTFSK----GYTRKGA 465 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~ 465 (525)
.|++++|+..|++++...|+++..+..+ |.++...|++++|+.+|++++...|+++. .+..+|.
T Consensus 224 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999887766 99999999999999999999999999854 7899999
Q ss_pred HHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 466 IQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 466 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
++...|++++|+..+++++.++|+++.++..++.++...|+..+|...++++++
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988877666554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.8e-33 Score=262.13 Aligned_cols=302 Identities=15% Similarity=0.134 Sum_probs=276.4
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHH
Q 009799 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (525)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (525)
++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------- 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA-------- 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH--------
Confidence 578899999999999999999999999999999999999999999999999999999999999998876544
Q ss_pred HHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhh
Q 009799 115 AAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (525)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (525)
T Consensus 74 -------------------------------------------------------------------------------- 73 (359)
T 3ieg_A 74 -------------------------------------------------------------------------------- 73 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 009799 195 FKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYS 274 (525)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 274 (525)
+..+|.++...|++++|+..|+
T Consensus 74 ----------------------------------------------------------~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 74 ----------------------------------------------------------RLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHcCChHHHHHHHH
Confidence 3455777888899999999999
Q ss_pred HHhhcCC---CCHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhh
Q 009799 275 SALELDD---EDISYLTNR------------AAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMA 339 (525)
Q Consensus 275 ~~l~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (525)
++++.+| +++.++..+ |.++...|++++|+..+++++...|.+ ..++..+|.++...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 96 KVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-------AELRELRAECFIKEG 168 (359)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTT
T ss_pred HHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHCC
Confidence 9999999 888888777 789999999999999999999999988 567777788888888
Q ss_pred hcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcC
Q 009799 340 KCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN 419 (525)
Q Consensus 340 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 419 (525)
+ +++|+..+++++. ..|.++.++..+|.++...|++++|+..|+++++..
T Consensus 169 ~----~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 169 E----PRKAISDLKAASK--------------------------LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp C----HHHHHHHHHHHHT--------------------------TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred C----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8 9999999999998 789999999999999999999999999999999999
Q ss_pred CCCHHHHH------------HHHHHHHHcCCchHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 420 PKDPRTYS------------NRAACYTKLGAMPEGLKDADKCIELDPTFSK----GYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 420 ~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
|+++.++. .+|.++...|++++|+..+++++...|+++. ++..+|.++...|++++|+.+|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99987654 4488899999999999999999999999874 4667999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 009799 484 LKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKE 519 (525)
Q Consensus 484 ~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 519 (525)
++.+|+++.++..++.++...|+..+|...++++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 299 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999888877666554
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=7e-34 Score=261.61 Aligned_cols=298 Identities=14% Similarity=0.116 Sum_probs=269.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+.++.+|..++..|+|++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-hHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 83 LQ-DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 83 ~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
.| ++++|+..|+++++.+|++..+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~------------------------------------------------------- 127 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPA------------------------------------------------------- 127 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHH-------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHH-------------------------------------------------------
Confidence 99 9999999999999999886554
Q ss_pred HHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHH
Q 009799 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (525)
T Consensus 128 -------------------------------------------------------------------------------- 127 (330)
T 3hym_B 128 -------------------------------------------------------------------------------- 127 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
+..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..+++++...|++
T Consensus 128 -----------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---- 192 (330)
T 3hym_B 128 -----------WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED---- 192 (330)
T ss_dssp -----------HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----
T ss_pred -----------HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC----
Confidence 34457778888999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (525)
..++..+|.++...++ +++|+..+++++...+.... ....|..+.++..+|.++..
T Consensus 193 ---~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~~~~-----------------~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 193 ---PFVMHEVGVVAFQNGE----WKTAEKWFLDALEKIKAIGN-----------------EVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp ---HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHTTTSC-----------------SCTTTTCCHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHccc----HHHHHHHHHHHHHHhhhccc-----------------cccccHHHHHHHHHHHHHHH
Confidence 5677778888888888 99999999999985332110 00126678899999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcCHH
Q 009799 402 QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ-FFLKEYD 474 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~ 474 (525)
.|++++|+..|+++++..|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999998 5666654
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=2e-33 Score=262.69 Aligned_cols=316 Identities=16% Similarity=0.169 Sum_probs=245.2
Q ss_pred HhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHH-HHHHhhccCCCCH----HHHHHHHHHHhhhhhHH
Q 009799 13 FSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALA-DAKKTVELKPDWS----KGYSRLGAAHLGLQDYI 87 (525)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~ 87 (525)
...+.|..+...|+.+....|. ++..+|++++|+. .|++++...|+++ ..++.+|.++...|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 12 SDVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred cCcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 3444555555555555555443 5666799999999 9999999998874 56899999999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHH
Q 009799 88 EAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDI 167 (525)
Q Consensus 88 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (525)
+|+..|+++++.+|++..+
T Consensus 82 ~A~~~~~~al~~~p~~~~~------------------------------------------------------------- 100 (368)
T 1fch_A 82 NAVLLFEAAVQQDPKHMEA------------------------------------------------------------- 100 (368)
T ss_dssp HHHHHHHHHHHSCTTCHHH-------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHH-------------------------------------------------------------
Confidence 9999999999998876544
Q ss_pred hhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhH
Q 009799 168 QRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERK 247 (525)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (525)
T Consensus 101 -------------------------------------------------------------------------------- 100 (368)
T 1fch_A 101 -------------------------------------------------------------------------------- 100 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHH---
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI--- 324 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~--- 324 (525)
+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++.......
T Consensus 101 -----~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 101 -----WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp -----HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred -----HHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 345577788889999999999999999999999999999999999999999999999999999875443211
Q ss_pred ------HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCC--cHHHHHHhh
Q 009799 325 ------ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK--IADEEREKG 396 (525)
Q Consensus 325 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 396 (525)
...+..++.++ ..++ +++|+..|++++. .+|. .+.++..+|
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~----~~~A~~~~~~a~~--------------------------~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLL-SDSL----FLEVKELFLAAVR--------------------------LDPTSIDPDVQCGLG 224 (368)
T ss_dssp ----------CTTHHHH-HHHH----HHHHHHHHHHHHH--------------------------HSTTSCCHHHHHHHH
T ss_pred hhhhcccHHHHHHHHHh-hccc----HHHHHHHHHHHHH--------------------------hCcCcccHHHHHHHH
Confidence 11111333333 4555 6666666666666 7888 889999999
Q ss_pred hHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH
Q 009799 397 NEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKA 476 (525)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 476 (525)
.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCC-----------HHHHHHHHHHHHHhhhhcccCCChH
Q 009799 477 LETYQEGLKHDPQN-----------QELLDGVRRCVQQINKAGRGELSPE 515 (525)
Q Consensus 477 ~~~~~~a~~~~p~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~ 515 (525)
+.+|++++.++|++ ..++..++.++..+|+..++.....
T Consensus 305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 99999999999988 8999999999999999888764433
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=1.4e-33 Score=263.90 Aligned_cols=295 Identities=14% Similarity=0.129 Sum_probs=257.9
Q ss_pred HHHHhcCCHHHHHH-HHHHHhccCCchh----HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhh
Q 009799 10 NAAFSSGDYEAAVR-HFTEAISLSPDNH----VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQ 84 (525)
Q Consensus 10 ~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 84 (525)
.++...|+|++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 36778899999999 9999999988864 679999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHH
Q 009799 85 DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMM 164 (525)
Q Consensus 85 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (525)
++++|+..|+++++.+|++..+
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~---------------------------------------------------------- 134 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTA---------------------------------------------------------- 134 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH----------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHH----------------------------------------------------------
Confidence 9999999999999998876544
Q ss_pred HHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHH
Q 009799 165 KDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAK 244 (525)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (525)
T Consensus 135 -------------------------------------------------------------------------------- 134 (368)
T 1fch_A 135 -------------------------------------------------------------------------------- 134 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHH----------------HHHHHHHHhcCHHHHHHHHH
Q 009799 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLT----------------NRAAVYLEMGKYEECIKDCD 308 (525)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~----------------~la~~~~~~~~~~~A~~~~~ 308 (525)
+..+|.++...|++++|+..+++++...|.+...+. .++.++ ..|++++|+..++
T Consensus 135 --------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~ 205 (368)
T 1fch_A 135 --------LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFL 205 (368)
T ss_dssp --------HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHH
Confidence 445577788889999999999999999999877665 466666 9999999999999
Q ss_pred HHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCc
Q 009799 309 KAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKI 388 (525)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 388 (525)
+++...|+... +.++..+|.++...|+ +++|+..|++++. .+|.+
T Consensus 206 ~a~~~~p~~~~-----~~~~~~l~~~~~~~g~----~~~A~~~~~~al~--------------------------~~~~~ 250 (368)
T 1fch_A 206 AAVRLDPTSID-----PDVQCGLGVLFNLSGE----YDKAVDCFTAALS--------------------------VRPND 250 (368)
T ss_dssp HHHHHSTTSCC-----HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTC
T ss_pred HHHHhCcCccc-----HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCcCC
Confidence 99999998321 5677888888888888 9999999999998 78889
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC-----------H
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF-----------S 457 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------~ 457 (525)
+.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+|++++.+.|++ +
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888 8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
.+|..+|.++..+|++++|..+++++++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999999999999999999877654
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.4e-31 Score=254.90 Aligned_cols=361 Identities=15% Similarity=0.069 Sum_probs=270.4
Q ss_pred CCHHHHHHHHHHHh----ccCCc--hhHHHHHHHHHHhhcccHHHHHHHHHHhhcc---------CCCCHHHHHHHHHHH
Q 009799 16 GDYEAAVRHFTEAI----SLSPD--NHVLYSNRSAAHASLHNYADALADAKKTVEL---------KPDWSKGYSRLGAAH 80 (525)
Q Consensus 16 g~~~~A~~~~~~al----~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~ 80 (525)
++++.++..+++.+ +..+. .+..+..+|.++..+|++++|++.|++++++ +|....++.++|.+|
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 34444455554443 33332 3567888999999999999999999999876 577788899999999
Q ss_pred hhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHH
Q 009799 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (525)
..+|++++|+.+|++++++.+.......
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~---------------------------------------------------- 132 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYR---------------------------------------------------- 132 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSSC----------------------------------------------------
T ss_pred HHcCChHHHHHHHHHHHHHhHhcccccc----------------------------------------------------
Confidence 9999999999999999876442210000
Q ss_pred HHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHH
Q 009799 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (525)
T Consensus 133 -------------------------------------------------------------------------------- 132 (472)
T 4g1t_A 133 -------------------------------------------------------------------------------- 132 (472)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHccc
Q 009799 241 KEAKERKEKALKEKEAGNAAY--KKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE---MGKYEECIKDCDKAVERGR 315 (525)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~~ 315 (525)
+..+.++..+|..+. ..+++++|+.+|+++++++|+++.++..++.++.. .++.++|+..++++++++|
T Consensus 133 ------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 133 ------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp ------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 012233444555444 45679999999999999999999999988888654 4667889999999999999
Q ss_pred cChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh--------hHHHHhchHHHHHHHHHHHhhcCCC
Q 009799 316 ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP--------DTLKKLNEAEKAKKELEQQEIFDPK 387 (525)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~ 387 (525)
++. .++..+|..+...+...+++++|+..+++++...|.. ..+...|++.+|+..+.++++.+|+
T Consensus 207 ~~~-------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 207 DNQ-------YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp SCH-------HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cch-------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 884 4444455444444444444889999999999888773 3556778999999999999999999
Q ss_pred cHHHHHHhhhHHHhc-------------------CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 009799 388 IADEEREKGNEFFKQ-------------------QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADK 448 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (525)
++.++..+|.+|... +.+++|+..++++++.+|.++.++..+|.++...|++++|+.+|++
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 999999999987643 3468899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHH---HHHHHHHH-HHHhcCHHHHHHHHHHHhccC------------------------CCCHHHHHHHHHH
Q 009799 449 CIELDPTFSK---GYTRKGAI-QFFLKEYDKALETYQEGLKHD------------------------PQNQELLDGVRRC 500 (525)
Q Consensus 449 al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~a~~~~------------------------p~~~~~~~~l~~~ 500 (525)
+++++|++.. ++..+|.+ +...|++++|+.+|+++++++ |+++.++..++.+
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL 439 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999887643 45667765 457899999999999988764 6667889999999
Q ss_pred HHHhhhhcccCCChHHHHHhh
Q 009799 501 VQQINKAGRGELSPEELKERQ 521 (525)
Q Consensus 501 ~~~~~~~~~a~~~~~~~~~~~ 521 (525)
+...|+..+|...++++++..
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHCC-------------
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999988887743
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=4.5e-32 Score=253.17 Aligned_cols=229 Identities=15% Similarity=0.186 Sum_probs=198.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHH---HHHHH
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI---ARALT 329 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~---~~~~~ 329 (525)
+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++...+..+ +..+.
T Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 181 (365)
T 4eqf_A 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHH
Confidence 445677888899999999999999999999999999999999999999999999999999999876554433 45556
Q ss_pred HhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCC--cHHHHHHhhhHHHhcCChhH
Q 009799 330 RKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK--IADEEREKGNEFFKQQKYPE 407 (525)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 407 (525)
.+|.++...++ +++|+..|++++. .+|. ++.++..+|.++...|++++
T Consensus 182 ~l~~~~~~~g~----~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~l~~~~~~~g~~~~ 231 (365)
T 4eqf_A 182 RMSKSPVDSSV----LEGVKELYLEAAH--------------------------QNGDMIDPDLQTGLGVLFHLSGEFNR 231 (365)
T ss_dssp -------CCHH----HHHHHHHHHHHHH--------------------------HSCSSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhhhhh----HHHHHHHHHHHHH--------------------------hCcCccCHHHHHHHHHHHHHCCCHHH
Confidence 67888888888 9999999999988 7777 88999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Q 009799 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (525)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (525)
|+..|+++++..|+++.+|..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++
T Consensus 232 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 232 AIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------------CHHHHHHHHHHHHHhhhhcccC
Q 009799 488 PQ------------NQELLDGVRRCVQQINKAGRGE 511 (525)
Q Consensus 488 p~------------~~~~~~~l~~~~~~~~~~~~a~ 511 (525)
|+ +..++..++.++..+|+.+.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 312 RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 88 4678999999999999875543
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=4.5e-32 Score=253.16 Aligned_cols=282 Identities=14% Similarity=0.112 Sum_probs=241.5
Q ss_pred HHHHHHHhccCCchh----HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 009799 22 VRHFTEAISLSPDNH----VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGL 97 (525)
Q Consensus 22 ~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 97 (525)
...+.+++...|.++ ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355566666655554 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHH
Q 009799 98 DIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLY 177 (525)
Q Consensus 98 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (525)
+++|++..+
T Consensus 127 ~~~p~~~~~----------------------------------------------------------------------- 135 (365)
T 4eqf_A 127 ELQPNNLKA----------------------------------------------------------------------- 135 (365)
T ss_dssp HHCTTCHHH-----------------------------------------------------------------------
T ss_pred hcCCCCHHH-----------------------------------------------------------------------
Confidence 998876544
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHH
Q 009799 178 LKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAG 257 (525)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (525)
+..+|
T Consensus 136 ---------------------------------------------------------------------------~~~l~ 140 (365)
T 4eqf_A 136 ---------------------------------------------------------------------------LMALA 140 (365)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 44557
Q ss_pred HHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHH----------HHHHHHhcCHHHHHHHHHHHHHcccc--ChhhHHHHH
Q 009799 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNR----------AAVYLEMGKYEECIKDCDKAVERGRE--LRSDFKMIA 325 (525)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~ 325 (525)
.++...|++++|+..|+++++..|++...+..+ |.++...|++++|+..+++++...|+ + +
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~ 213 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID-------P 213 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC-------H
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-------H
Confidence 778888999999999999999999876666554 99999999999999999999999998 5 5
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.++..+|.++...++ +++|+..|++++. ..|.++.++..+|.++...|++
T Consensus 214 ~~~~~l~~~~~~~g~----~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGE----FNRAIDAFNAALT--------------------------VRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp HHHHHHHHHHHHHTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCH
Confidence 677888888888888 9999999999998 7899999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhcCH
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT------------FSKGYTRKGAIQFFLKEY 473 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~ 473 (525)
++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+ +..+|..++.++..+|+.
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999999999999999999999999999999999877 367899999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009799 474 DKALETYQEGLKH 486 (525)
Q Consensus 474 ~~A~~~~~~a~~~ 486 (525)
+.|....++.+..
T Consensus 344 ~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 344 ELFQAANLGDLDV 356 (365)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHHHhhHHH
Confidence 9998887775543
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.98 E-value=6.1e-31 Score=242.40 Aligned_cols=214 Identities=10% Similarity=0.034 Sum_probs=185.3
Q ss_pred HHHHHHHHhccc-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhh
Q 009799 254 KEAGNAAYKKKE-FEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKG 332 (525)
Q Consensus 254 ~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 332 (525)
+.+|.++...|+ +++|+..|++++.++|++..+|+.+|.++..+|++++|+..|++++.++|++ ..+|..+|
T Consensus 135 ~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------~~a~~~lg 207 (382)
T 2h6f_A 135 HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQ 207 (382)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------HHHHHHHH
Confidence 344566666775 8888888888888888888888888888888888888888888888888888 66777777
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh-cCChhHH---
Q 009799 333 TALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK-QQKYPEA--- 408 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A--- 408 (525)
.++..+|+ +++|+..|++++. .+|.+..+|+.+|.++.. .|.+++|
T Consensus 208 ~~~~~~g~----~~eAl~~~~~al~--------------------------l~P~~~~a~~~lg~~l~~l~~~~~eA~~~ 257 (382)
T 2h6f_A 208 WVIQEFKL----WDNELQYVDQLLK--------------------------EDVRNNSVWNQRYFVISNTTGYNDRAVLE 257 (382)
T ss_dssp HHHHHHTC----CTTHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred HHHHHcCC----hHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence 77777777 8888888888888 788889999999999998 5555888
Q ss_pred --HHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--------C-HHH
Q 009799 409 --IQHYTESLRRNPKDPRTYSNRAACYTKLG--AMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK--------E-YDK 475 (525)
Q Consensus 409 --~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~ 475 (525)
+.+|++++.++|++..+|+++|.++...| ++++|+..+.++ +.+|+++.++..+|.+|..+| + +++
T Consensus 258 ~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 258 REVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 58999999999999999999999999988 699999999988 899999999999999999985 3 589
Q ss_pred HHHHHHHH-hccCCCCHHHHHHHHHHHHHhh
Q 009799 476 ALETYQEG-LKHDPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 476 A~~~~~~a-~~~~p~~~~~~~~l~~~~~~~~ 505 (525)
|+.+|+++ ++++|.....|..++..+...-
T Consensus 337 A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~~ 367 (382)
T 2h6f_A 337 ALELCEILAKEKDTIRKEYWRYIGRSLQSKH 367 (382)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 99999999 9999999999999999888763
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.98 E-value=5.7e-31 Score=242.56 Aligned_cols=260 Identities=12% Similarity=0.074 Sum_probs=233.0
Q ss_pred HhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh-HHHHHHHHHHhhccCCCcHHH
Q 009799 28 AISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD-YIEAVNSYKKGLDIDPNNEAL 106 (525)
Q Consensus 28 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 106 (525)
++..+|+++.++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 5677889999999999999999999999999999999999999999999999999997 999999999999999987665
Q ss_pred HhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHH
Q 009799 107 KSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQA 186 (525)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (525)
|.
T Consensus 169 ~~------------------------------------------------------------------------------ 170 (382)
T 2h6f_A 169 WH------------------------------------------------------------------------------ 170 (382)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 44
Q ss_pred HHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccH
Q 009799 187 LGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEF 266 (525)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (525)
.+|.++...|++
T Consensus 171 --------------------------------------------------------------------~~g~~~~~~g~~ 182 (382)
T 2h6f_A 171 --------------------------------------------------------------------HRRVLVEWLRDP 182 (382)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHTCC
T ss_pred --------------------------------------------------------------------HHHHHHHHccCH
Confidence 456667777999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchH
Q 009799 267 EKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (525)
Q Consensus 267 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
++|+..|+++++++|++..+|..+|.++..+|++++|+..|+++++++|++ ..+|..+|.++..++. ..+
T Consensus 183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~-------~~a~~~lg~~l~~l~~---~~~ 252 (382)
T 2h6f_A 183 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-------NSVWNQRYFVISNTTG---YND 252 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTC---SCS
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcC---cch
Confidence 999999999999999999999999999999999999999999999999998 5677777777777333 047
Q ss_pred HH-----HHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC--ChhHHHHHHHHHHhcC
Q 009799 347 PA-----IETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ--KYPEAIQHYTESLRRN 419 (525)
Q Consensus 347 ~A-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~ 419 (525)
+| +.+|++++. .+|++..+|+.+|.++...| ++++|++.++++ +.+
T Consensus 253 eA~~~~el~~~~~Al~--------------------------l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--------------------------LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp HHHHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 77 466666666 89999999999999999988 699999999998 999
Q ss_pred CCCHHHHHHHHHHHHHcC--------C-chHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHh
Q 009799 420 PKDPRTYSNRAACYTKLG--------A-MPEGLKDADKC-IELDPTFSKGYTRKGAIQFFL 470 (525)
Q Consensus 420 ~~~~~~~~~la~~~~~~~--------~-~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 470 (525)
|+++.++..+|.+|..+| + +++|+.+|+++ ++++|.....|..++..+..+
T Consensus 306 p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 306 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 999999999999999985 2 58999999999 999999999999999887654
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.5e-30 Score=226.19 Aligned_cols=250 Identities=43% Similarity=0.698 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHH
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 326 (525)
+..+..+..+|.+++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++...|+........+.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4578899999999999999999999999999999 999999999999999999999999999999999987656666678
Q ss_pred HHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChh
Q 009799 327 ALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYP 406 (525)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (525)
++..+|.++...++ +++|+..|++++...+....+...|++++|+..+++++..+|..+.++..+|.++...|+++
T Consensus 81 ~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 81 SFARIGNAYHKLGD----LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHccc----HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 407 EAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
+|+..|+++++..|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|+.+|++++++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------CCCHHHHHHHHHHH
Q 009799 487 D------PQNQELLDGVRRCV 501 (525)
Q Consensus 487 ~------p~~~~~~~~l~~~~ 501 (525)
+ |++..++..+..++
T Consensus 237 ~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 237 DAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHTTTTHHHHHHHHHHTT
T ss_pred ChhhcCCCchHHHHHHHHHhh
Confidence 9 99999998887653
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.8e-30 Score=238.52 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=144.1
Q ss_pred HH-HHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhc
Q 009799 291 AA-VYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLN 369 (525)
Q Consensus 291 a~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 369 (525)
+. ++...|++++|+..+++++...|.+ ..++..+|.++...++ +++|+..+++++.
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~----~~~A~~~~~~~~~------------ 200 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMNPND-------AQLHASLGVLYNLSNN----YDSAAANLRRAVE------------ 200 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH------------
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcc----HHHHHHHHHHHHH------------
Confidence 44 5778899999999999999998887 5667777777777777 9999999999888
Q ss_pred hHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 009799 370 EAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKC 449 (525)
Q Consensus 370 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (525)
..|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+++++
T Consensus 201 --------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 201 --------------LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 450 IELDPT------------FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 450 l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
+...|+ ++.++..+|.++..+|++++|...++++++..|++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 999998 78899999999999999999999999888776543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.9e-30 Score=238.38 Aligned_cols=282 Identities=13% Similarity=0.124 Sum_probs=247.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+.++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
.|++++|+..|+++++.+|.+...+..+.....
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 134 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADV----------------------------------------------- 134 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHH-----------------------------------------------
Confidence 999999999999999999987654433311100
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T 3cv0_A 135 -------------------------------------------------------------------------------- 134 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHHHHHHHHHH-HH-HHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 243 AKERKEKALKEKEA-GN-AAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 243 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
.......+ |. ++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|++
T Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--- 205 (327)
T 3cv0_A 135 ------DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD--- 205 (327)
T ss_dssp -----------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred ------HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---
Confidence 00001123 33 47778999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
..++..+|.++...++ +++|+..+++++. ..|.++.++..+|.++.
T Consensus 206 ----~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~--------------------------~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 206 ----AQLWNKLGATLANGNR----PQEALDAYNRALD--------------------------INPGYVRVMYNMAVSYS 251 (327)
T ss_dssp ----HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHH
Confidence 5667777888888887 9999999999998 78889999999999999
Q ss_pred hcCChhHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCC
Q 009799 401 KQQKYPEAIQHYTESLRRNPK------------DPRTYSNRAACYTKLGAMPEGLKDADKCIELDP 454 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 454 (525)
..|++++|+..|++++...|+ ++.++..+|.++...|++++|...++++++..|
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999 789999999999999999999999998877644
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=8.6e-28 Score=232.79 Aligned_cols=365 Identities=14% Similarity=0.099 Sum_probs=295.3
Q ss_pred chHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhh----cccHHHHHHHHHHhhccCCCCHHHH
Q 009799 2 ADEAKAKGNAAFS----SGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHAS----LHNYADALADAKKTVELKPDWSKGY 73 (525)
Q Consensus 2 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 73 (525)
+++++.+|..++. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+..|+++.+. .++.++
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 114 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 4678899999999 99999999999999886 578999999999999 99999999999999875 578999
Q ss_pred HHHHHHHhh----hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCC
Q 009799 74 SRLGAAHLG----LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADP 149 (525)
Q Consensus 74 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
+.+|.+|.. .+++++|+.+|+++.+. +++.++..++.++.......
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~---------------------------- 164 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVT---------------------------- 164 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC----------------------------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC----------------------------
Confidence 999999998 88999999999999875 57888888888876521000
Q ss_pred CcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCC
Q 009799 150 TTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEP 229 (525)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (525)
.-...++..+.+.+.
T Consensus 165 ----~d~~~A~~~~~~a~~------------------------------------------------------------- 179 (490)
T 2xm6_A 165 ----RDYVMAREWYSKAAE------------------------------------------------------------- 179 (490)
T ss_dssp ----CCHHHHHHHHHHHHH-------------------------------------------------------------
T ss_pred ----CCHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 000122222222221
Q ss_pred CCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hcCHH
Q 009799 230 EPEPMELTEEEKEAKERKEKALKEKEAGNAAYK----KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE----MGKYE 301 (525)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~ 301 (525)
. ..+.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .++++
T Consensus 180 ---------------~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 180 ---------------Q--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp ---------------T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ---------------C--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 1 245677888888887 88999999999998875 567888899999887 78899
Q ss_pred HHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHH----hhhcccchHHHHHHHHHHHhcCCCh------hHHHHh---
Q 009799 302 ECIKDCDKAVERGRELRSDFKMIARALTRKGTALVK----MAKCSKDYEPAIETFQKALTEHRNP------DTLKKL--- 368 (525)
Q Consensus 302 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~--- 368 (525)
+|+.+|+++++..+ ..++..+|.++.. .++ +++|+.+|+++.+..... .++...
T Consensus 241 ~A~~~~~~a~~~~~---------~~a~~~lg~~y~~g~~~~~d----~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 241 QSRVLFSQSAEQGN---------SIAQFRLGYILEQGLAGAKE----PLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HHHHHHHHHHTTTC---------HHHHHHHHHHHHHTTTSSCC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHHCCC---------HHHHHHHHHHHHCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Confidence 99999999887532 4566777777766 455 999999999988764321 123333
Q ss_pred --chHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC---ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCc
Q 009799 369 --NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ---KYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAM 439 (525)
Q Consensus 369 --~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~ 439 (525)
+++++|+..++++.+. .++.+++.+|.++...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++
T Consensus 308 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp BCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 6888999999988876 56789999999999877 899999999999987 579999999999999 8999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHH
Q 009799 440 PEGLKDADKCIELDPTFSKGYTRKGAIQFF----LKEYDKALETYQEGLKHDPQ---NQELLDGVRRCVQQ 503 (525)
Q Consensus 440 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~ 503 (525)
++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++.+|+ ++.+...++.++..
T Consensus 384 ~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 384 QQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999986 468999999999999 89999999999999999954 88888887776543
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.97 E-value=7.1e-29 Score=221.38 Aligned_cols=256 Identities=17% Similarity=0.156 Sum_probs=181.2
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHH
Q 009799 36 HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (525)
Q Consensus 36 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (525)
+..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++ .|.++..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~--------- 72 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA--------- 72 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC---------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH---------
Confidence 456777888888888888888888888888888888888888888888888888888888877 4433211
Q ss_pred HHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhc
Q 009799 116 AASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKF 195 (525)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (525)
T Consensus 73 -------------------------------------------------------------------------------- 72 (272)
T 3u4t_A 73 -------------------------------------------------------------------------------- 72 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009799 196 KGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSS 275 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 275 (525)
...++..+|.++...|++++|+.+|++
T Consensus 73 -----------------------------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~ 99 (272)
T 3u4t_A 73 -----------------------------------------------------KSADFEYYGKILMKKGQDSLAIQQYQA 99 (272)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 123345566677777777777777777
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 009799 276 ALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKA 355 (525)
Q Consensus 276 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 355 (525)
+++.+|.++.++..+|.++...|++++|+..+++++..+|
T Consensus 100 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---------------------------------------- 139 (272)
T 3u4t_A 100 AVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT---------------------------------------- 139 (272)
T ss_dssp HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC----------------------------------------
T ss_pred HHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC----------------------------------------
Confidence 7777777777777777766666666666666666655544
Q ss_pred HhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009799 356 LTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK 435 (525)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 435 (525)
.++.++..+|...+..+++++|+..|+++++..|+++.++..+|.++..
T Consensus 140 -------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 140 -------------------------------TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA 188 (272)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred -------------------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 4445555555333334477888888888888888888888888888888
Q ss_pred cCC---chHHHHHHHHHHhcC---CC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009799 436 LGA---MPEGLKDADKCIELD---PT-----FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 436 ~~~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 504 (525)
.|+ +++|+..|+++++.. |+ ...++..+|.++...|++++|+.+|+++++++|+++.++..+..+....
T Consensus 189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 887 777888888888764 43 2357888888888888999999999999888898888888887776554
Q ss_pred h
Q 009799 505 N 505 (525)
Q Consensus 505 ~ 505 (525)
+
T Consensus 269 ~ 269 (272)
T 3u4t_A 269 H 269 (272)
T ss_dssp -
T ss_pred c
Confidence 3
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=6.5e-27 Score=228.97 Aligned_cols=422 Identities=9% Similarity=0.013 Sum_probs=251.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHH-h
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH-L 81 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~ 81 (525)
+.|...+. +...|++++|...|++++...|.++.+|..++..+...|++++|...|++++...| +...|..++... .
T Consensus 14 ~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 14 DAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 46777777 47789999999999999999999999999999999999999999999999999999 677888888543 4
Q ss_pred hhhhHHHHHH----HHHHhhcc---CCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccc
Q 009799 82 GLQDYIEAVN----SYKKGLDI---DPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSY 154 (525)
Q Consensus 82 ~~g~~~~A~~----~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
..|++++|.+ .|++++.. +|.+..+|..++.+....... . ......
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~------------~---------------~~~~~~ 144 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV------------G---------------SYAENQ 144 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC------------S---------------STTHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc------------c---------------cHHHHh
Confidence 5677776665 77777653 566777777776665431000 0 000000
Q ss_pred cchHHHHHHHHHHhhCCCch--hHHhhHHHHHHHHHH-------------HHhhhccCCCCCCcccccccc-CCCCCCCc
Q 009799 155 LDQDDFRNMMKDIQRNPNNL--NLYLKDQRVMQALGV-------------LLNVKFKGPTGGDDVEMQDED-APKGPETS 218 (525)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 218 (525)
-.+.+...+.+.+. .|... ..+.....+....+. +......... .......+.. ....|..
T Consensus 145 ~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~-~~~~~~~l~~~~~~~~p~- 221 (530)
T 2ooe_A 145 RITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKE-YETVMKGLDRNAPSVPPQ- 221 (530)
T ss_dssp HHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHH-HHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHhccccccCCCC-
Confidence 00233334444444 44332 111111111111100 0000000000 0000000000 0000000
Q ss_pred hhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhc----cc----HHHHHHHHHHHhhcCCCCHHHHHHH
Q 009799 219 KEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKK----KE----FEKAIEHYSSALELDDEDISYLTNR 290 (525)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~A~~~~~~~l~~~p~~~~~~~~l 290 (525)
..+ ........|.......... ++ ...++..|++++..+|.++.+|..+
T Consensus 222 ------------~~~-----------~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~ 278 (530)
T 2ooe_A 222 ------------NTP-----------QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEA 278 (530)
T ss_dssp --------------C-----------CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------CCh-----------hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 000 0001123333332222221 22 2588899999999999999999999
Q ss_pred HHHHHH-------hcCHH-------HHHHHHHHHHH-ccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 009799 291 AAVYLE-------MGKYE-------ECIKDCDKAVE-RGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKA 355 (525)
Q Consensus 291 a~~~~~-------~~~~~-------~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 355 (525)
|..+.. .|+++ +|+..|++++. ..|++ ..++..++.++...|+ +++|...|+++
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~----~~~A~~~~~~a 347 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMK----YEKVHSIYNRL 347 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHH
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCC----HHHHHHHHHHH
Confidence 999987 79977 99999999997 78987 5677777777777777 99999999999
Q ss_pred HhcCCChh--H-------HHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHH-HhcCChhHHHHHHHHHHhcCCCCHHH
Q 009799 356 LTEHRNPD--T-------LKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF-FKQQKYPEAIQHYTESLRRNPKDPRT 425 (525)
Q Consensus 356 ~~~~~~~~--~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~ 425 (525)
+...|... . +...|++++|...|.++++..|.....+...+.+. ...|++++|..+|+++++..|+++.+
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~ 427 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 427 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence 99665421 1 12345556666666666665555555554444432 23566666666666666666666666
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Q 009799 426 YSNRAACYTKLGAMPEGLKDADKCIELDPTFSK----GYTRKGAIQFFLKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 426 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 490 (525)
|..++.++...|++++|..+|++++...|.++. +|...+......|+.+.+..+++++++..|++
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 666666666666666666666666665444333 55555555555566666666666666666543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=2.2e-27 Score=211.95 Aligned_cols=279 Identities=13% Similarity=0.109 Sum_probs=219.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCch-hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHH
Q 009799 9 GNAAFSSGDYEAAVRHFTEAISLSPDN-HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYI 87 (525)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 87 (525)
...++..|+|..|+..++++...+|++ .+....++.+|+.+|+++.|+..++. .+|....++..++..+...|+++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 456788999999999999998888887 46888899999999999999998865 26667788889999999999999
Q ss_pred HHHHHHHHhhcc--CCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHH
Q 009799 88 EAVNSYKKGLDI--DPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMK 165 (525)
Q Consensus 88 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (525)
+|+..+++++.. +|+++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~----------------------------------------------------------- 103 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTF----------------------------------------------------------- 103 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHH-----------------------------------------------------------
T ss_pred HHHHHHHHHHhcccCCCCHHH-----------------------------------------------------------
Confidence 999999998865 5776544
Q ss_pred HHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHH
Q 009799 166 DIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (525)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (525)
T Consensus 104 -------------------------------------------------------------------------------- 103 (291)
T 3mkr_A 104 -------------------------------------------------------------------------------- 103 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
++.+|.++...|++++|+..+++ |.++.++..+|.++..+|++++|+..+++++..+|++... .++
T Consensus 104 -------~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~--~l~ 169 (291)
T 3mkr_A 104 -------LLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT--QLA 169 (291)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred -------HHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH--HHH
Confidence 44557778888999999999987 8899999999999999999999999999999998876321 112
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.+|..+ +...++ +++|+..|++++. ..|.++.+++.+|.++...|++
T Consensus 170 ~a~~~l---~~~~~~----~~eA~~~~~~~l~--------------------------~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 170 TAWVSL---AAGGEK----LQDAYYIFQEMAD--------------------------KCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHH---HHCTTH----HHHHHHHHHHHHH--------------------------HSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---HhCchH----HHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHcCCH
Confidence 222222 112244 7777777777776 6777888888888888888888
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPE-GLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETY 480 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (525)
++|+..|+++++.+|+++.++.++|.++...|++++ +..+++++++++|+++.+. .+..+.+.++++..-|
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 888888888888888888888888888888888865 4577788888888887654 3455555666665544
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=3.3e-28 Score=208.04 Aligned_cols=200 Identities=17% Similarity=0.187 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHH
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 326 (525)
|..+.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++ ..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~ 74 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-------LG 74 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999998 56
Q ss_pred HHHHhhhhHHHh-----------hhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHh
Q 009799 327 ALTRKGTALVKM-----------AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREK 395 (525)
Q Consensus 327 ~~~~~~~~~~~~-----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 395 (525)
++..+|.++... |+ +++|+..|+++++ .+|+++.++..+
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~----~~~A~~~~~~al~--------------------------~~P~~~~~~~~l 124 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGY----LEQALSVLKDAER--------------------------VNPRYAPLHLQR 124 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHH----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccC----HHHHHHHHHHHHH--------------------------hCcccHHHHHHH
Confidence 666677766666 55 6666666666666 899999999999
Q ss_pred hhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q 009799 396 GNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDK 475 (525)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 475 (525)
|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 009799 476 ALETYQEGL 484 (525)
Q Consensus 476 A~~~~~~a~ 484 (525)
|+..|+++.
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 999998764
No 31
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=234.00 Aligned_cols=309 Identities=22% Similarity=0.256 Sum_probs=254.9
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh----HHHHHHHHHHhhcccHHHHHHHHHHhhcc------CCCCHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH----VLYSNRSAAHASLHNYADALADAKKTVEL------KPDWSK 71 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 71 (525)
+..++.+|..++..|++++|+..|++++...|+++ .++..+|.++...|++++|+..+++++.+ .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45788999999999999999999999999999874 68999999999999999999999999877 345577
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCc
Q 009799 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTT 151 (525)
Q Consensus 72 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
++..+|.++...|++++|+..+++++.+.|....
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------------------------------- 122 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---------------------------------------------- 122 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----------------------------------------------
Confidence 8999999999999999999999999886543211
Q ss_pred ccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCC
Q 009799 152 RSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEP 231 (525)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (525)
T Consensus 123 -------------------------------------------------------------------------------- 122 (406)
T 3sf4_A 123 -------------------------------------------------------------------------------- 122 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhhHHHHHHHHhHHHHHHHHHHHHHHHhccc--------------------HHHHHHHHHHHhhc------CCCCHH
Q 009799 232 EPMELTEEEKEAKERKEKALKEKEAGNAAYKKKE--------------------FEKAIEHYSSALEL------DDEDIS 285 (525)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~l~~------~p~~~~ 285 (525)
.+..+.++..+|.++...|+ +++|+.++.+++.. .|....
T Consensus 123 --------------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 188 (406)
T 3sf4_A 123 --------------KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188 (406)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 01345567778888888888 99999999999876 334457
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHH
Q 009799 286 YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTL 365 (525)
Q Consensus 286 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 365 (525)
++..+|.++...|++++|+..+++++...+..... ...+.++..+|.++...++ +++|+..+++++...+...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~~~~~-- 261 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-AAERRAYSNLGNAYIFLGE----FETASEYYKKTLLLARQLK-- 261 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHHhCc--
Confidence 89999999999999999999999999988765332 3447788999999999999 9999999999987322110
Q ss_pred HHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCc
Q 009799 366 KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAM 439 (525)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~ 439 (525)
..+....++..+|.++...|++++|+.+++++++..+.. +.++..+|.++...|++
T Consensus 262 ------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 262 ------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred ------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 112236778899999999999999999999999875543 56888999999999999
Q ss_pred hHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCHHH
Q 009799 440 PEGLKDADKCIELDP------TFSKGYTRKGAIQFFLKEYDK 475 (525)
Q Consensus 440 ~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~ 475 (525)
++|+.++++++++.+ ....++..+|.++...|+...
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999999988733 336688899999999887643
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=5.9e-27 Score=209.24 Aligned_cols=204 Identities=9% Similarity=0.065 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHH
Q 009799 251 LKEKEAGNAAYKKKEFEKAIEHYSSALEL--DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (525)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (525)
.++..++..+...+++++|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+ ..++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-------~~~~ 133 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-------LECM 133 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-------HHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-------HHHH
Confidence 34455677888889999999999999876 699999999999999999999999999998 665 5677
Q ss_pred HHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhh--hHHHhcCChh
Q 009799 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKG--NEFFKQQKYP 406 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~ 406 (525)
..+|.++..+|+ +++|+..|++++. .+|+........+ .++...|+++
T Consensus 134 ~~l~~~~~~~g~----~~~A~~~l~~~~~--------------------------~~p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 134 AMTVQILLKLDR----LDLARKELKKMQD--------------------------QDEDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp HHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHCCC----HHHHHHHHHHHHh--------------------------hCcCcHHHHHHHHHHHHHhCchHHH
Confidence 778888888888 9999999999998 6666654444333 3444568999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH-HHHHHHHHhc
Q 009799 407 EAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDK-ALETYQEGLK 485 (525)
Q Consensus 407 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~ 485 (525)
+|+..|+++++..|+++.+++.+|.++..+|++++|+..|++++..+|+++.++.++|.++...|+..+ +..+++++++
T Consensus 184 eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999976 5789999999
Q ss_pred cCCCCHHHHHH
Q 009799 486 HDPQNQELLDG 496 (525)
Q Consensus 486 ~~p~~~~~~~~ 496 (525)
++|+++.+...
T Consensus 264 ~~P~~~~~~d~ 274 (291)
T 3mkr_A 264 AHRSHPFIKEY 274 (291)
T ss_dssp HCTTCHHHHHH
T ss_pred hCCCChHHHHH
Confidence 99999987653
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.5e-28 Score=213.31 Aligned_cols=169 Identities=18% Similarity=0.232 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhh
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKG 332 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 332 (525)
+..+|.++...|++++|+.+|++++...|. +.++...|++++|+..+++++...|.. ..++..+|
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~ 146 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEK-------AEEARLEG 146 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcch-------HHHHHHHH
Confidence 344445555555555555555555554444 234444555555555555555555443 34444455
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHH
Q 009799 333 TALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHY 412 (525)
Q Consensus 333 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 412 (525)
.++...++ +++|+..|++++. .+|.++.++..+|.++...|++++|+..+
T Consensus 147 ~~~~~~~~----~~~A~~~~~~a~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 147 KEYFTKSD----WPNAVKAYTEMIK--------------------------RAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcC----HHHHHHHHHHHHh--------------------------cCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55555555 5555555555555 45555666666777777777777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC------CCCHHHHHHHHHH
Q 009799 413 TESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD------PTFSKGYTRKGAI 466 (525)
Q Consensus 413 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 466 (525)
+++++.+|+++.++..+|.++...|++++|+.+|+++++++ |++..++..++.+
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 77777777777777777777777777777777777777776 6666666666554
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=1.1e-27 Score=213.70 Aligned_cols=200 Identities=16% Similarity=0.178 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC----HHHHHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW----SKGYSRLGA 78 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 78 (525)
+.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999 4444 445999999
Q ss_pred HHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchH
Q 009799 79 AHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQD 158 (525)
Q Consensus 79 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
++...|++++|+..|+++++.+|++..+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------------------------------- 110 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDM---------------------------------------------------- 110 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHH----------------------------------------------------
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHH----------------------------------------------------
Confidence 9999999999999999999998876543
Q ss_pred HHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhH
Q 009799 159 DFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTE 238 (525)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (525)
T Consensus 111 -------------------------------------------------------------------------------- 110 (272)
T 3u4t_A 111 -------------------------------------------------------------------------------- 110 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccCh
Q 009799 239 EEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR 318 (525)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 318 (525)
+..+|.++...|++++|+.+|+++++.+|.++.++..+|......+++++|+..++++++..|++
T Consensus 111 --------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~- 175 (272)
T 3u4t_A 111 --------------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI- 175 (272)
T ss_dssp --------------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-
T ss_pred --------------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-
Confidence 44567888889999999999999999999999999999955555568888888888888888776
Q ss_pred hhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
..++..+|.++...++ ...+++|+..|++++.
T Consensus 176 ------~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 176 ------YIGYLWRARANAAQDP-DTKQGLAKPYYEKLIE 207 (272)
T ss_dssp ------HHHHHHHHHHHHHHST-TCSSCTTHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHcCc-chhhHHHHHHHHHHHH
Confidence 3444444444443332 1114445555555554
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=225.49 Aligned_cols=312 Identities=15% Similarity=0.131 Sum_probs=262.9
Q ss_pred chhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCH----HHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhh
Q 009799 34 DNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS----KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSG 109 (525)
Q Consensus 34 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 109 (525)
....+++.+|.++...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|++++.+.+..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------ 80 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------ 80 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc------
Confidence 4567889999999999999999999999999999984 678999999999999999999999998642210
Q ss_pred HHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHH
Q 009799 110 LADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGV 189 (525)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (525)
T Consensus 81 -------------------------------------------------------------------------------- 80 (406)
T 3sf4_A 81 -------------------------------------------------------------------------------- 80 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHH
Q 009799 190 LLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKA 269 (525)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 269 (525)
...+..+.++..+|.++...|++++|
T Consensus 81 ------------------------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A 106 (406)
T 3sf4_A 81 ------------------------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEA 106 (406)
T ss_dssp ------------------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------------------------------------cccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 01134567788899999999999999
Q ss_pred HHHHHHHhhcCCCC------HHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHccccChhhHHH
Q 009799 270 IEHYSSALELDDED------ISYLTNRAAVYLEMGK--------------------YEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 270 ~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
+.++++++...|.. ..++..+|.++...|+ +++|+..+.+++.+.+... ....
T Consensus 107 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-~~~~ 185 (406)
T 3sf4_A 107 IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAA 185 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-CcHH
Confidence 99999999886653 4589999999999999 9999999999998755432 2334
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (525)
.+.++..+|.++...++ +++|+..+++++...+... ..+....++..+|.++...|
T Consensus 186 ~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~~~~~--------------------~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGN----FRDAVIAHEQRLLIAKEFG--------------------DKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHTB----HHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccC----HHHHHHHHHHHHHHHHhcC--------------------CcHHHHHHHHHHHHHHHHcC
Confidence 47889999999999999 9999999999998422110 11223458899999999999
Q ss_pred ChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhc
Q 009799 404 KYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF------SKGYTRKGAIQFFLK 471 (525)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g 471 (525)
++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 9999999999999887655 6789999999999999999999999999885443 668999999999999
Q ss_pred CHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHhhhhccc
Q 009799 472 EYDKALETYQEGLKHDP------QNQELLDGVRRCVQQINKAGRG 510 (525)
Q Consensus 472 ~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~a 510 (525)
++++|+.+|++++++.+ ....++..++.++..+|+....
T Consensus 322 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 322 NHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 99999999999998843 3467889999999999987543
No 36
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=5.5e-25 Score=213.10 Aligned_cols=366 Identities=13% Similarity=0.068 Sum_probs=294.7
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHhh----cccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh----hhhHHHHHH
Q 009799 20 AAVRHFTEAISLSPDNHVLYSNRSAAHAS----LHNYADALADAKKTVELKPDWSKGYSRLGAAHLG----LQDYIEAVN 91 (525)
Q Consensus 20 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 91 (525)
.++..++++.. +.++.+++.+|.+|.. .+++++|+..|+++++. .++.+++.+|.+|.. .+++++|+.
T Consensus 25 ~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34566666654 5679999999999999 99999999999999986 678999999999999 999999999
Q ss_pred HHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCC
Q 009799 92 SYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNP 171 (525)
Q Consensus 92 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (525)
+|+++.+. +++.++..++.++....... .-.+.++..+.+...
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~--------------------------------~~~~~A~~~~~~a~~--- 143 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVK--------------------------------VDKAESVKWFRLAAE--- 143 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSC--------------------------------CCHHHHHHHHHHHHH---
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCC--------------------------------CCHHHHHHHHHHHHH---
Confidence 99999875 57888888888876521000 000112222222111
Q ss_pred CchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHH
Q 009799 172 NNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKAL 251 (525)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (525)
...+.
T Consensus 144 ---------------------------------------------------------------------------~~~~~ 148 (490)
T 2xm6_A 144 ---------------------------------------------------------------------------QGRDS 148 (490)
T ss_dssp ---------------------------------------------------------------------------TTCHH
T ss_pred ---------------------------------------------------------------------------CCCHH
Confidence 12456
Q ss_pred HHHHHHHHHHh----cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHccccChhhHHH
Q 009799 252 KEKEAGNAAYK----KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE----MGKYEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 252 ~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+..+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------- 218 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD-------- 218 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC--------
Confidence 78889999988 88999999999999886 579999999999999 8999999999999998642
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh------HHHH----hchHHHHHHHHHHHhhcCCCcHHHHH
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD------TLKK----LNEAEKAKKELEQQEIFDPKIADEER 393 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 393 (525)
..++..+|.++..-....+++++|+.+|+++........ ++.. .+++++|+..|+++.+. .++.+++
T Consensus 219 -~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~ 295 (490)
T 2xm6_A 219 -ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQY 295 (490)
T ss_dssp -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHH
T ss_pred -HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHH
Confidence 466777888777621112339999999999998654321 2333 67899999999999865 6788999
Q ss_pred HhhhHHHhc-----CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009799 394 EKGNEFFKQ-----QKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG---AMPEGLKDADKCIELDPTFSKGYTRKGA 465 (525)
Q Consensus 394 ~l~~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~ 465 (525)
.+|.++... +++++|+.+|+++++. .++.+++.+|.+|...| ++++|+.+|+++++. .++.+++.+|.
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 371 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGN 371 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 999999988 9999999999999986 46789999999999877 899999999999987 67999999999
Q ss_pred HHHH----hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----hhhhcccCCChHHHHHh
Q 009799 466 IQFF----LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQ----INKAGRGELSPEELKER 520 (525)
Q Consensus 466 ~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 520 (525)
+|.. .+++++|+.+|+++.+. .++.++..++.++.. .++..+|...++++.+.
T Consensus 372 ~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 372 ALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 9999 89999999999999986 468999999999988 66666666555555443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=3.2e-27 Score=201.91 Aligned_cols=199 Identities=14% Similarity=0.184 Sum_probs=176.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCC
Q 009799 281 DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR 360 (525)
Q Consensus 281 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 360 (525)
|.++.+++.+|.++...|++++|+..|+++++.+|++ +.++..+|.++...|+ +++|+..|++++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~g~----~~~A~~~~~~al~--- 67 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD-------PEALYWLARTQLKLGL----VNPALENGKTLVA--- 67 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH---
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH---
Confidence 7888999999999999999999999999999999999 6777778888888877 9999999999999
Q ss_pred ChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhc-----------CChhHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 361 NPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ-----------QKYPEAIQHYTESLRRNPKDPRTYSNR 429 (525)
Q Consensus 361 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~l 429 (525)
.+|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+
T Consensus 68 -----------------------~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 124 (217)
T 2pl2_A 68 -----------------------RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124 (217)
T ss_dssp -----------------------HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 8999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009799 430 AACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (525)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (525)
|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++++|+++.++..++.++..+|+..+
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHH
Q 009799 510 GELSPEEL 517 (525)
Q Consensus 510 a~~~~~~~ 517 (525)
|...+++.
T Consensus 204 A~~~~~~~ 211 (217)
T 2pl2_A 204 AARAAALE 211 (217)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 88765543
No 38
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=2.8e-24 Score=210.30 Aligned_cols=385 Identities=12% Similarity=0.025 Sum_probs=280.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHH-HHhhcccHHHHHH----HHHHhhc---cCCCCHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSA-AHASLHNYADALA----DAKKTVE---LKPDWSKGYS 74 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~---~~p~~~~~~~ 74 (525)
..|...|......|++++|...|++++...| +...|..++. .....|++++|.+ .|++++. .+|.+...|.
T Consensus 47 ~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~ 125 (530)
T 2ooe_A 47 RFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWV 125 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 5688899999999999999999999999999 5778888885 4445677777665 7787765 4677788998
Q ss_pred HHHHHHhh---------hhhHHHHHHHHHHhhccCCCcH--HHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhh
Q 009799 75 RLGAAHLG---------LQDYIEAVNSYKKGLDIDPNNE--ALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWA 143 (525)
Q Consensus 75 ~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (525)
..+..... .|+++.|...|+++++ .|.+. ..+..........+.. ...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~--------------------~~~ 184 (530)
T 2ooe_A 126 DYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIH--------------------LAK 184 (530)
T ss_dssp HHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHH--------------------HHH
T ss_pred HHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchh--------------------HHH
Confidence 88888765 8999999999999999 57653 2333333322211110 000
Q ss_pred hcccCCCcccccchHHHHHH----------HHHHhh-----CCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCcccccc
Q 009799 144 KLTADPTTRSYLDQDDFRNM----------MKDIQR-----NPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQD 208 (525)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (525)
.+.. ...+.+..+ ...+.. .|................-.+... .+
T Consensus 185 ~~l~-------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~---~~---------- 244 (530)
T 2ooe_A 185 KMIE-------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS---NP---------- 244 (530)
T ss_dssp HHHH-------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH---CS----------
T ss_pred HHHH-------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc---CC----------
Confidence 0000 000111111 112221 111100000000111111000000 00
Q ss_pred ccCCCCCCCchhhccCCCCCCCCC----ChhhhHHHHHHHHhHHHHHHHHHHHHHHHh-------cccHH-------HHH
Q 009799 209 EDAPKGPETSKEETRKPESEPEPE----PMELTEEEKEAKERKEKALKEKEAGNAAYK-------KKEFE-------KAI 270 (525)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~A~ 270 (525)
. ..... ..++......+...|..+.+|+.+|..+.. .|+++ +|+
T Consensus 245 -----------------~-~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 245 -----------------L-RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp -----------------S-CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred -----------------c-cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 0 00000 123456777888889999999999999986 79877 999
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHH
Q 009799 271 EHYSSALE-LDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAI 349 (525)
Q Consensus 271 ~~~~~~l~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 349 (525)
..|+++++ ..|++..+|..+|.++...|++++|...|+++++..|.+. ..+|...+.++...++ +++|.
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~----~~~A~ 376 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP------TLVYIQYMKFARRAEG----IKSGR 376 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH------HHHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc------hHHHHHHHHHHHHhcC----HHHHH
Confidence 99999997 8999999999999999999999999999999999988763 2467777777777788 99999
Q ss_pred HHHHHHHhcCCChh-H--------HHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCC
Q 009799 350 ETFQKALTEHRNPD-T--------LKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNP 420 (525)
Q Consensus 350 ~~~~~~~~~~~~~~-~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 420 (525)
..|+++++..|... . +...|++++|...|+++++..|+++.+|..++.++...|++++|..+|++++...|
T Consensus 377 ~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 377 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99999999877532 1 12478999999999999999999999999999999999999999999999999987
Q ss_pred CCHH----HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH
Q 009799 421 KDPR----TYSNRAACYTKLGAMPEGLKDADKCIELDPTFS 457 (525)
Q Consensus 421 ~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 457 (525)
.++. +|...+......|+.+.+..++.++++..|+++
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 6654 888888888899999999999999999998554
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=1.2e-26 Score=220.13 Aligned_cols=294 Identities=17% Similarity=0.181 Sum_probs=248.0
Q ss_pred CchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCH----HHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHh
Q 009799 33 PDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS----KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKS 108 (525)
Q Consensus 33 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 108 (525)
|.....++.+|.++...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|++++.+....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM----- 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-----
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-----
Confidence 34567788999999999999999999999999999987 588999999999999999999999998642110
Q ss_pred hHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHH
Q 009799 109 GLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALG 188 (525)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (525)
T Consensus 120 -------------------------------------------------------------------------------- 119 (411)
T 4a1s_A 120 -------------------------------------------------------------------------------- 119 (411)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHH
Q 009799 189 VLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEK 268 (525)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (525)
...+....++..+|.++...|++++
T Consensus 120 -------------------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~ 144 (411)
T 4a1s_A 120 -------------------------------------------------------NDRLGEAKSSGNLGNTLKVMGRFDE 144 (411)
T ss_dssp -------------------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------------------------------------------cCchHHHHHHHHHHHHHHHCCCHHH
Confidence 0113566778899999999999999
Q ss_pred HHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcC-----------------HHHHHHHHHHHHHccccChhhHHHHH
Q 009799 269 AIEHYSSALEL------DDEDISYLTNRAAVYLEMGK-----------------YEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 269 A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
|+.++++++.. .|....++..+|.++...|+ +++|+.++++++.+.+... .....+
T Consensus 145 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-~~~~~~ 223 (411)
T 4a1s_A 145 AAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG-DRGAQG 223 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 99999999988 55667899999999999999 9999999999998765432 223347
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.++..+|.++...++ +++|+.++++++...+... ..+....++..+|.++...|++
T Consensus 224 ~~~~~la~~~~~~g~----~~~A~~~~~~al~~~~~~~--------------------~~~~~~~~~~~la~~~~~~g~~ 279 (411)
T 4a1s_A 224 RACGNLGNTYYLLGD----FQAAIEHHQERLRIAREFG--------------------DRAAERRANSNLGNSHIFLGQF 279 (411)
T ss_dssp HHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHHhcC--------------------CcHHHHHHHHHHHHHHHHCcCH
Confidence 889999999999999 9999999999988432110 1112245889999999999999
Q ss_pred hHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCH
Q 009799 406 PEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPT------FSKGYTRKGAIQFFLKEY 473 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~ 473 (525)
++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.+.+. ...++..+|.++..+|++
T Consensus 280 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccH
Confidence 99999999999887744 678999999999999999999999999987543 255899999999999999
Q ss_pred HHHHHHHHHHhccCCCCH
Q 009799 474 DKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 474 ~~A~~~~~~a~~~~p~~~ 491 (525)
++|..+|++++++.+...
T Consensus 360 ~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 360 ERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999987643
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=3.1e-26 Score=217.31 Aligned_cols=289 Identities=20% Similarity=0.247 Sum_probs=244.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh----HHHHHHHHHHhhcccHHHHHHHHHHhhcc------CCCCHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH----VLYSNRSAAHASLHNYADALADAKKTVEL------KPDWSK 71 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 71 (525)
+..++.+|..++..|++++|+..|++++...|+++ .++..+|.++...|++++|+..+++++.+ .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 35678999999999999999999999999999976 58999999999999999999999999988 567788
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCc
Q 009799 72 GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTT 151 (525)
Q Consensus 72 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
++..+|.++...|++++|+..|++++...+..
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------------------------ 159 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQL------------------------------------------------ 159 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 99999999999999999999999998753211
Q ss_pred ccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCC
Q 009799 152 RSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEP 231 (525)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (525)
T Consensus 160 -------------------------------------------------------------------------------- 159 (411)
T 4a1s_A 160 -------------------------------------------------------------------------------- 159 (411)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhhHHHHHHHHhHHHHHHHHHHHHHHHhccc-----------------HHHHHHHHHHHhhcC------CCCHHHHH
Q 009799 232 EPMELTEEEKEAKERKEKALKEKEAGNAAYKKKE-----------------FEKAIEHYSSALELD------DEDISYLT 288 (525)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~~l~~~------p~~~~~~~ 288 (525)
...+....++..+|.++...|+ +++|+.++++++... +....++.
T Consensus 160 ------------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 227 (411)
T 4a1s_A 160 ------------GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACG 227 (411)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------------hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0012456678888999999999 999999999998763 33456899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHh
Q 009799 289 NRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKL 368 (525)
Q Consensus 289 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (525)
.+|.++...|++++|+.++++++...+... .....+.++..+|.++...++ +++|+..+++++...+...
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~~~~~----- 297 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFG-DRAAERRANSNLGNSHIFLGQ----FEDAAEHYKRTLALAVELG----- 297 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHTTTC----HHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHCcC----HHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999887643 233446789999999999999 9999999999988322100
Q ss_pred chHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchHH
Q 009799 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEG 442 (525)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A 442 (525)
..+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|
T Consensus 298 ---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 298 ---------------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 112336788999999999999999999999999875432 46889999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 009799 443 LKDADKCIELDPT 455 (525)
Q Consensus 443 ~~~~~~al~~~p~ 455 (525)
+.++++++++.+.
T Consensus 363 ~~~~~~al~~~~~ 375 (411)
T 4a1s_A 363 LKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998765
No 41
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.95 E-value=2.6e-26 Score=211.59 Aligned_cols=210 Identities=23% Similarity=0.320 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch----hHHHHHHHHHHhhcccHHHHHHHHHHhhcc------CCCCHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN----HVLYSNRSAAHASLHNYADALADAKKTVEL------KPDWSKG 72 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 72 (525)
..++..|..++..|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++.. .|....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 468899999999999999999999999999987 478889999999999999999999999887 4556788
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcc
Q 009799 73 YSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTR 152 (525)
Q Consensus 73 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
+..+|.++...|++++|+..+++++++.|....
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------------------- 118 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------------------------------------- 118 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 999999999999999999999999876443211
Q ss_pred cccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCC
Q 009799 153 SYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (525)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (525)
T Consensus 119 -------------------------------------------------------------------------------- 118 (338)
T 3ro2_A 119 -------------------------------------------------------------------------------- 118 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhhHHHHHHHHhHHHHHHHHHHHHHHHhccc--------------------HHHHHHHHHHHhhc------CCCCHHH
Q 009799 233 PMELTEEEKEAKERKEKALKEKEAGNAAYKKKE--------------------FEKAIEHYSSALEL------DDEDISY 286 (525)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~l~~------~p~~~~~ 286 (525)
.+..+.++..+|.++...|+ +++|+.++++++.. .|....+
T Consensus 119 -------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 185 (338)
T 3ro2_A 119 -------------KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA 185 (338)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 01234556677788888888 88888888888765 2333567
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
+..+|.++...|++++|+..+++++...+... .....+.++..+|.++...++ +++|+..+++++.
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~ 251 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGE----FETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHH
Confidence 78888888888888888888888887765432 122234556666666666666 6666666666655
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.95 E-value=4.2e-26 Score=199.65 Aligned_cols=221 Identities=20% Similarity=0.238 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
..+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+ ..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 93 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-------ATA 93 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-------hHH
Confidence 4677889999999999999999999999999999999999999999999999999999999999999987 567
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (525)
+..+|.++...++ +++|+..+++++. ..|.++.++..+|.++...|++++
T Consensus 94 ~~~la~~~~~~~~----~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 94 YYGAGNVYVVKEM----YKEAKDMFEKALR--------------------------AGMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcc----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhccHHH
Confidence 7777888888888 9999999999998 788889999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Q 009799 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (525)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (525)
|+..++++++..|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|+++++++
T Consensus 144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 009799 488 PQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 488 p~~~~~~~~l~~~~~~~~ 505 (525)
|+++.++..++.+....+
T Consensus 224 p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTCHHHHHHHTC------
T ss_pred cchHHHHHHHHHHHhhcc
Confidence 999999998887765443
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.95 E-value=3.7e-25 Score=210.77 Aligned_cols=359 Identities=14% Similarity=0.076 Sum_probs=248.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccH---HHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNY---ADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
..+|..+++.|++++|+..|+++.+. +++.+++.+|.++...|++ ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56799999999999999999999765 5789999999999999999 9999999999976 77889999996666
Q ss_pred hh-----hHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccch
Q 009799 83 LQ-----DYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQ 157 (525)
Q Consensus 83 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (525)
.| ++++|+.+|+++++. +++.++..++.++...+......
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~--------------------------------- 126 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNV--------------------------------- 126 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTC---------------------------------
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCH---------------------------------
Confidence 55 899999999999984 55568888888887765431110
Q ss_pred HHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhh
Q 009799 158 DDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELT 237 (525)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (525)
.++..+...
T Consensus 127 ~a~~~~~~a----------------------------------------------------------------------- 135 (452)
T 3e4b_A 127 NAQQQISQW----------------------------------------------------------------------- 135 (452)
T ss_dssp CHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 011111111
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Q 009799 238 EEEKEAKERKEKALKEKEAGNAAYKKK----EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMG---KYEECIKDCDKA 310 (525)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~ 310 (525)
..+..+.+++.+|.++...+ ..+.+..+++.+...+|. +++.+|.+|...| ++++|+..|+++
T Consensus 136 -------~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 136 -------QAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp -------HHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 11123456777788888777 444455555555554444 8888888888888 888888888888
Q ss_pred HHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh-------H-H--HHhchHHHHHHHHHH
Q 009799 311 VERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD-------T-L--KKLNEAEKAKKELEQ 380 (525)
Q Consensus 311 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~-~--~~~~~~~~a~~~~~~ 380 (525)
.+..|.. +..++.+|.+|.......+++++|+.+|+++. ...+. + + ...+++++|+..|++
T Consensus 206 a~~g~~~-------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 206 VSRGTVT-------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHTTCSC-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHCCCHH-------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 8887776 55556667666554222334888888888887 22222 1 2 345677888888888
Q ss_pred HhhcCCCcHHHHHHhhhHHHhcC-----ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHh
Q 009799 381 QEIFDPKIADEEREKGNEFFKQQ-----KYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIE 451 (525)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~ 451 (525)
+.+. .++.+++.+|.+|. .| ++++|+.+|+++. |.++.+++++|.+|.. ..++++|+.+|+++.+
T Consensus 277 Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 277 GRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 8754 58999999999998 55 9999999999998 8899999999999887 4489999999999987
Q ss_pred cCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009799 452 LDPTFSKGYTRKGAIQFF----LKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQI 504 (525)
Q Consensus 452 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 504 (525)
+.++.+.+.+|.+|.. ..++.+|..+|+++.+..+ +.+...+..+...+
T Consensus 351 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 351 --NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPL 403 (452)
T ss_dssp --TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTC
T ss_pred --hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhC
Confidence 4678899999999985 5699999999999988754 56666676665444
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=6.3e-26 Score=208.94 Aligned_cols=291 Identities=16% Similarity=0.159 Sum_probs=241.4
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCH----HHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhH
Q 009799 35 NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWS----KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGL 110 (525)
Q Consensus 35 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 110 (525)
+...++..|.++...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++...+..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 76 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------- 76 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-------
Confidence 356788899999999999999999999999999984 678899999999999999999999988642110
Q ss_pred HhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHH
Q 009799 111 ADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVL 190 (525)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (525)
T Consensus 77 -------------------------------------------------------------------------------- 76 (338)
T 3ro2_A 77 -------------------------------------------------------------------------------- 76 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHH
Q 009799 191 LNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAI 270 (525)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 270 (525)
...+..+.++..+|.++...|++++|+
T Consensus 77 -----------------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~ 103 (338)
T 3ro2_A 77 -----------------------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAI 103 (338)
T ss_dssp -----------------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------------------------------------cccHHHHHHHHHHHHHHHHccCHHHHH
Confidence 011245677888999999999999999
Q ss_pred HHHHHHhhcCCCC------HHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHccccChhhHHHH
Q 009799 271 EHYSSALELDDED------ISYLTNRAAVYLEMGK--------------------YEECIKDCDKAVERGRELRSDFKMI 324 (525)
Q Consensus 271 ~~~~~~l~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~~~~~~~~~~~~ 324 (525)
.++++++...|.. ..++..+|.++...|+ +++|+..+++++...+... .....
T Consensus 104 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~-~~~~~ 182 (338)
T 3ro2_A 104 VCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG-DRAAQ 182 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC-CHHHH
Confidence 9999999886543 3489999999999999 9999999999988754432 22334
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (525)
+.++..+|.++...++ +++|+..+++++...+... ..+....++..+|.++...|+
T Consensus 183 ~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGN----FRDAVIAHEQRLLIAKEFG--------------------DKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHhcC--------------------ChHHHHHHHHHHHHHHHHcCC
Confidence 7889999999999999 9999999999987322110 122335588999999999999
Q ss_pred hhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcC
Q 009799 405 YPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF------SKGYTRKGAIQFFLKE 472 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~ 472 (525)
+++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999999999886654 6788999999999999999999999999875432 5588999999999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q 009799 473 YDKALETYQEGLKHDPQN 490 (525)
Q Consensus 473 ~~~A~~~~~~a~~~~p~~ 490 (525)
+++|..+|++++++.+..
T Consensus 319 ~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 319 HDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 999999999999988764
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.94 E-value=6.4e-25 Score=183.01 Aligned_cols=173 Identities=16% Similarity=0.258 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh
Q 009799 283 DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP 362 (525)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 362 (525)
++.+|+.+|.+|...|++++|+..|+++++++|++ ..++..+|.++...++ +++|+..+.+++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~----~~~a~~~~~~~~~----- 67 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-------VETLLKLGKTYMDIGL----PNDAIESLKKFVV----- 67 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCC----HHHHHHHHHHHHh-----
Confidence 45556666666666666666666666666666665 3445555555555555 6666666666655
Q ss_pred hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHH
Q 009799 363 DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEG 442 (525)
Q Consensus 363 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 442 (525)
..|..+.++..+|.++...++++.|+..+.+++...|+++.++..+|.++..+|++++|
T Consensus 68 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A 126 (184)
T 3vtx_A 68 ---------------------LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKA 126 (184)
T ss_dssp ---------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhH
Confidence 56666777777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Q 009799 443 LKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 492 (525)
+..|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.
T Consensus 127 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 127 IEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 88888888888888888888888888888888888888888888887643
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.94 E-value=1.3e-25 Score=200.50 Aligned_cols=183 Identities=12% Similarity=-0.021 Sum_probs=104.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhH
Q 009799 256 AGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTAL 335 (525)
Q Consensus 256 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (525)
+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|++.... ...+ +.
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~-~~ 154 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS-------LWLY-LA 154 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-------HHHH-HH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH-------HHHH-HH
Confidence 344455556666666666666666666666666666666666666666666666666665553211 1111 11
Q ss_pred HHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHH
Q 009799 336 VKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTES 415 (525)
Q Consensus 336 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 415 (525)
...++ +++|+..+.+++. ..|.+...+ .++.++...++.++|+..++++
T Consensus 155 ~~~~~----~~~A~~~~~~~~~--------------------------~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 155 EQKLD----EKQAKEVLKQHFE--------------------------KSDKEQWGW-NIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp HHHHC----HHHHHHHHHHHHH--------------------------HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHhcC----HHHHHHHHHHHHh--------------------------cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 22233 5555555555555 333333332 2455556666666677777766
Q ss_pred HhcCCC----CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 009799 416 LRRNPK----DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETY 480 (525)
Q Consensus 416 l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (525)
+...|. ++.++..+|.++...|++++|+.+|++++..+|++... .+.++..+|++++|++.|
T Consensus 204 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred hcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 665553 25667777777777777777777777777777765433 366667777777777666
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.94 E-value=5.4e-24 Score=187.29 Aligned_cols=217 Identities=17% Similarity=0.090 Sum_probs=202.0
Q ss_pred hHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHH
Q 009799 246 RKEK-ALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (525)
Q Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 324 (525)
+|.. +.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------- 104 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN------- 104 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------
Confidence 4554 89999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (525)
..++..+|.++...++ +++|+..+++++. .+ ..|..+.++..+|.++...|+
T Consensus 105 ~~~~~~la~~~~~~g~----~~~A~~~~~~~~~-~~-----------------------~~~~~~~~~~~la~~~~~~g~ 156 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKR----YEEAYQRLLEASQ-DT-----------------------LYPERSRVFENLGLVSLQMKK 156 (252)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHTT-CT-----------------------TCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhH----HHHHHHHHHHHHh-Cc-----------------------cCcccHHHHHHHHHHHHHcCC
Confidence 5677777888888888 9999999999887 11 467788999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGL 484 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (525)
+++|+..++++++..|.++.++..+|.++...|++++|+.+++++++..|.++.++..++.++...|++++|..++++++
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHH
Q 009799 485 KHDPQNQELLDGV 497 (525)
Q Consensus 485 ~~~p~~~~~~~~l 497 (525)
+.+|+++.+...+
T Consensus 237 ~~~p~~~~~~~~l 249 (252)
T 2ho1_A 237 RLYPGSLEYQEFQ 249 (252)
T ss_dssp HHCTTSHHHHHHH
T ss_pred HHCCCCHHHHHHH
Confidence 9999999877654
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=7.5e-24 Score=182.90 Aligned_cols=217 Identities=16% Similarity=0.080 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
.|..+.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.+ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~ 76 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-------A 76 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------h
Confidence 457889999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred HHHHHhhhhHHHh-hhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC
Q 009799 326 RALTRKGTALVKM-AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (525)
Q Consensus 326 ~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (525)
.++..+|.++... ++ +++|+..+++++. .+ ..|....++..+|.++...|+
T Consensus 77 ~~~~~l~~~~~~~~~~----~~~A~~~~~~~~~-~~-----------------------~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNR----PAESMAYFDKALA-DP-----------------------TYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHHHHHHTTTCC----HHHHHHHHHHHHT-ST-----------------------TCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCc----HHHHHHHHHHHHc-Cc-----------------------CCcchHHHHHHHHHHHHHcCC
Confidence 6677778888888 88 9999999999987 22 357778999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP-TFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
+++|+..++++++..|.++.++..+|.++...|++++|+..+++++..+| .++..+..++.++...|+.++|..+++.+
T Consensus 129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hccCCCCHHHHHHH
Q 009799 484 LKHDPQNQELLDGV 497 (525)
Q Consensus 484 ~~~~p~~~~~~~~l 497 (525)
.+.+|+++.+...+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999999887655
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=1.6e-24 Score=180.55 Aligned_cols=174 Identities=22% Similarity=0.304 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
+.+.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+. ..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~ 75 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-------AEA 75 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-------HHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-------HHH
Confidence 4577899999999999999999999999999999999999999999999999999999999999999998 566
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (525)
+..+|.++...++ ++.|...+.+++. .+|.++.++..+|.++...|++++
T Consensus 76 ~~~~~~~~~~~~~----~~~a~~~~~~a~~--------------------------~~~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 76 YYILGSANFMIDE----KQAAIDALQRAIA--------------------------LNTVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp HHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCccchHHHHHHHHHHHHhCCchh
Confidence 7777777777777 9999999999988 889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHH
Q 009799 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK 458 (525)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (525)
|+..|+++++.+|.++.+|.++|.++..+|++++|+.+|+++++++|+++.
T Consensus 126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 126 AIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 999999999999999999999999999999999999999999999997643
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=1.4e-24 Score=193.76 Aligned_cols=225 Identities=13% Similarity=0.052 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
..+.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++ ..+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~ 113 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-------NYA 113 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------THH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc-------cHH
Confidence 4667788899999999999999999999999999999999999999999999999999999999999988 466
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (525)
+..+|.++...|+ +++|+..|++++. ..|.++......+. +...|++++
T Consensus 114 ~~~la~~~~~~g~----~~~A~~~~~~a~~--------------------------~~~~~~~~~~~~~~-~~~~~~~~~ 162 (275)
T 1xnf_A 114 HLNRGIALYYGGR----DKLAQDDLLAFYQ--------------------------DDPNDPFRSLWLYL-AEQKLDEKQ 162 (275)
T ss_dssp HHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHH-HHHHHCHHH
T ss_pred HHHHHHHHHHhcc----HHHHHHHHHHHHH--------------------------hCCCChHHHHHHHH-HHHhcCHHH
Confidence 7777777887777 9999999999998 67777766555554 466799999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT----FSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
|+..+++++...|.+...+. ++.++...++.++|+..+++++...|. ++.++..+|.++...|++++|+.+|+++
T Consensus 163 A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 163 AKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999998866654 778888889999999999999988764 3789999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhhhhcccCCCh
Q 009799 484 LKHDPQNQELLDGVRRCVQQINKAGRGELSP 514 (525)
Q Consensus 484 ~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 514 (525)
+.++|++...+ +.++..+++..++...+
T Consensus 242 l~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 99999886544 66777888887776653
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=1.4e-24 Score=189.87 Aligned_cols=219 Identities=21% Similarity=0.217 Sum_probs=178.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFR 161 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
..|++++|+..|+++++.+|.+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------------------------------- 127 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDL------------------------------------------------------- 127 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHH-------------------------------------------------------
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHH-------------------------------------------------------
Confidence 9999999999999999998876543
Q ss_pred HHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHH
Q 009799 162 NMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEK 241 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (525)
T Consensus 128 -------------------------------------------------------------------------------- 127 (243)
T 2q7f_A 128 -------------------------------------------------------------------------------- 127 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 242 EAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++
T Consensus 128 -----------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 192 (243)
T 2q7f_A 128 -----------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH---- 192 (243)
T ss_dssp -----------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC----
T ss_pred -----------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Confidence 34457788889999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (525)
..++..+|.++...++ +++|+..+++++. .+|+++.++..++.+...
T Consensus 193 ---~~~~~~la~~~~~~~~----~~~A~~~~~~~~~--------------------------~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 193 ---ADAFYNAGVTYAYKEN----REKALEMLDKAID--------------------------IQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp ---HHHHHHHHHHHHHTTC----TTHHHHHHHHHHH--------------------------HCTTCHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHHHccC----HHHHHHHHHHHHc--------------------------cCcchHHHHHHHHHHHhh
Confidence 5677778888888888 9999999999999 788888888887776654
Q ss_pred cC
Q 009799 402 QQ 403 (525)
Q Consensus 402 ~~ 403 (525)
.+
T Consensus 240 ~~ 241 (243)
T 2q7f_A 240 HH 241 (243)
T ss_dssp --
T ss_pred cc
Confidence 44
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=2.5e-23 Score=185.26 Aligned_cols=158 Identities=17% Similarity=0.221 Sum_probs=93.0
Q ss_pred HHHHHHHHHh----cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHccccChhhHHHH
Q 009799 253 EKEAGNAAYK----KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE----MGKYEECIKDCDKAVERGRELRSDFKMI 324 (525)
Q Consensus 253 ~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 324 (525)
++.+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------- 145 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND--------- 145 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc---------
Confidence 3444555655 67777777777777765 366777777777777 7777777777777766542
Q ss_pred HHHHHHhhhhHHH----hhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 325 ARALTRKGTALVK----MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 325 ~~~~~~~~~~~~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
..++..+|.++.. .++ +++|+.+|+++++ . .++.++..+|.++.
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~----~~~A~~~~~~a~~--------------------------~--~~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKD----LKKALASYDKACD--------------------------L--KDSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCC----HHHHHHHHHHHHH--------------------------T--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHH--------------------------C--CCHHHHHHHHHHHH
Confidence 3445555555554 344 5555555555554 2 23445555555555
Q ss_pred h----cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHhcCCC
Q 009799 401 K----QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPT 455 (525)
Q Consensus 401 ~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~ 455 (525)
. .+++++|+.+|+++++..| +.+++.+|.++.. .+++++|+.+|+++++..|.
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 5 5555555555555555543 4555555555555 55555555555555555544
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=9.6e-25 Score=207.91 Aligned_cols=354 Identities=9% Similarity=0.004 Sum_probs=242.6
Q ss_pred chHHHHHHHHHHhcCCH---HHHHHHHHHHhccCCchhHHHHHHHHHHhhcc-----cHHHHHHHHHHhhccCCCCHHHH
Q 009799 2 ADEAKAKGNAAFSSGDY---EAAVRHFTEAISLSPDNHVLYSNRSAAHASLH-----NYADALADAKKTVELKPDWSKGY 73 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~ 73 (525)
+++++.+|.+++..|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+..|+++++. .++.++
T Consensus 35 ~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~ 109 (452)
T 3e4b_A 35 SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTL 109 (452)
T ss_dssp CTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHH
Confidence 35677889999999999 9999999999976 7889999999776665 899999999999985 455689
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhcc-CCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcc
Q 009799 74 SRLGAAHLGLQDYIEAVNSYKKGLDI-DPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTR 152 (525)
Q Consensus 74 ~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
+.+|.+|...+...++...++..... .+.++.+...++.++...+...+
T Consensus 110 ~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~------------------------------ 159 (452)
T 3e4b_A 110 IPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ------------------------------ 159 (452)
T ss_dssp HHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG------------------------------
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc------------------------------
Confidence 99999999887755544444333322 24557788888888887754311
Q ss_pred cccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCC
Q 009799 153 SYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (525)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (525)
....+.....
T Consensus 160 ------~~~~a~~~~~---------------------------------------------------------------- 169 (452)
T 3e4b_A 160 ------HLDDVERICK---------------------------------------------------------------- 169 (452)
T ss_dssp ------GHHHHHHHHH----------------------------------------------------------------
T ss_pred ------CHHHHHHHHH----------------------------------------------------------------
Confidence 1111100000
Q ss_pred ChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh----cCHHHHHH
Q 009799 233 PMELTEEEKEAKERKEKALKEKEAGNAAYKKK---EFEKAIEHYSSALELDDEDISYLTNRAAVYLEM----GKYEECIK 305 (525)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----~~~~~A~~ 305 (525)
... ...+.+++.+|.++...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+.
T Consensus 170 --------~a~---~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 170 --------AAL---NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp --------HHT---TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred --------HHH---cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 000 012236888999999999 999999999999999999999999999999766 79999999
Q ss_pred HHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChh-----HHHHhc-----hHHHHH
Q 009799 306 DCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPD-----TLKKLN-----EAEKAK 375 (525)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~-----~~~~a~ 375 (525)
+|+++. |++ +.+++.+|.++..... .+++++|+.+|+++........ .+...| ++++|+
T Consensus 239 ~~~~aa---~g~-------~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 239 LLEKIA---PGY-------PASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHG---GGS-------THHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHc---CCC-------HHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999998 777 4566666666331111 3449999999999997653211 112244 899999
Q ss_pred HHHHHHhhcCCCcHHHHHHhhhHHHh----cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchHHHHHHH
Q 009799 376 KELEQQEIFDPKIADEEREKGNEFFK----QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDAD 447 (525)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~ 447 (525)
..|+++. +.++.+++.+|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|.. ..++.+|..+|+
T Consensus 308 ~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 308 AHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 9999998 8999999999999987 4599999999999987 4568899999999985 468999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHhccCCC
Q 009799 448 KCIELDPTFSKGYTRKGAIQFF--LKEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 448 ~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~p~ 489 (525)
++.+.. ++.+...++.+... .++..+|....++.....|.
T Consensus 383 ~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 383 LAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 999875 45666666666543 34666777777766655443
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=5.9e-24 Score=203.76 Aligned_cols=210 Identities=16% Similarity=0.149 Sum_probs=194.0
Q ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhccc
Q 009799 265 EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKY-EECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSK 343 (525)
Q Consensus 265 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
.+++++..+.+.....|.+..+++.+|.++...|++ ++|+..|+++++.+|++ +.++..+|.++...++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~g~--- 152 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-------VEAWNQLGEVYWKKGD--- 152 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCC---
Confidence 477888889988899999999999999999999999 99999999999999998 6778888888888888
Q ss_pred chHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhc---------CChhHHHHHHHH
Q 009799 344 DYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ---------QKYPEAIQHYTE 414 (525)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~ 414 (525)
+++|+..|++++. .+|+ ..++..+|.++... |++++|+..|++
T Consensus 153 -~~~A~~~~~~al~--------------------------~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~ 204 (474)
T 4abn_A 153 -VTSAHTCFSGALT--------------------------HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204 (474)
T ss_dssp -HHHHHHHHHHHHT--------------------------TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHh--------------------------hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH
Confidence 9999999999999 7777 68899999999999 999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHc--------CCchHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 415 SLRRNPKDPRTYSNRAACYTKL--------GAMPEGLKDADKCIELDP---TFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 415 al~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
+++.+|+++.+|..+|.++... |++++|+.+|+++++++| +++.+++.+|.++..+|++++|+.+|+++
T Consensus 205 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 205 AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999 89999999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhhhhcccCC
Q 009799 484 LKHDPQNQELLDGVRRCVQQINKAGRGEL 512 (525)
Q Consensus 484 ~~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 512 (525)
++++|+++.++..++.++..+|+..++..
T Consensus 285 l~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 285 AALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766653
No 55
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.93 E-value=3.3e-24 Score=201.02 Aligned_cols=214 Identities=15% Similarity=0.109 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED-------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
..+.++..+|.++...|++++|+.++.++++..+.. ..++..+|.+|...|++++|+..+++++.+.+... .
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~ 219 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-Q 219 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-C
Confidence 466778899999999999999999999999884433 46899999999999999999999999999877653 3
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcC-CCcHHHHHHhhhHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFD-PKIADEEREKGNEF 399 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~ 399 (525)
....+.++..+|.++...|+ +++|+.++++++...+.. .+ |..+.++..+|.++
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~----~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQ----YEDAIPYFKRAIAVFEES---------------------NILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHT---------------------TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHhh---------------------ccchhHHHHHHHHHHHH
Confidence 34457899999999999999 999999999999832110 23 77789999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCC---chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 009799 400 FKQQKYPEAIQHYTESLRRNP-----KDPRTYSNRAACYTKLGA---MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK 471 (525)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 471 (525)
...|++++|+.+++++++..+ .....+..+|.++...|+ +++|+..+++. ...|....++..+|.+|...|
T Consensus 275 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999998743 333446789999999999 88888888876 344555678999999999999
Q ss_pred CHHHHHHHHHHHhccCC
Q 009799 472 EYDKALETYQEGLKHDP 488 (525)
Q Consensus 472 ~~~~A~~~~~~a~~~~p 488 (525)
++++|..+|++++++..
T Consensus 354 ~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 354 NFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988654
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=7.4e-23 Score=182.23 Aligned_cols=195 Identities=20% Similarity=0.256 Sum_probs=172.9
Q ss_pred HHHHHHHHHh----cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHccccChhhHHHH
Q 009799 253 EKEAGNAAYK----KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE----MGKYEECIKDCDKAVERGRELRSDFKMI 324 (525)
Q Consensus 253 ~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 324 (525)
++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+..|+++++.. +
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~------- 109 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y------- 109 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-------
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C-------
Confidence 4455667777 889999999999998875 78999999999999 999999999999999874 3
Q ss_pred HHHHHHhhhhHHH----hhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 325 ARALTRKGTALVK----MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 325 ~~~~~~~~~~~~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
..++..+|.++.. .++ +++|+.+|++++. .. ++.++..+|.++.
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~----~~~A~~~~~~a~~--------------------------~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRD----FKKAVEYFTKACD--------------------------LN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCC----HHHHHHHHHHHHH--------------------------TT--CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCcccC----HHHHHHHHHHHHh--------------------------cC--cHHHHHHHHHHHH
Confidence 5778888888888 777 9999999999987 33 5778899999999
Q ss_pred h----cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---
Q 009799 401 K----QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF--- 469 (525)
Q Consensus 401 ~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 469 (525)
. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++++..| +.+++.+|.+|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 8 99999999999999987 468999999999999 9999999999999999866 8899999999999
Q ss_pred -hcCHHHHHHHHHHHhccCCCCHHHH
Q 009799 470 -LKEYDKALETYQEGLKHDPQNQELL 494 (525)
Q Consensus 470 -~g~~~~A~~~~~~a~~~~p~~~~~~ 494 (525)
.+++++|+.+|++++++.|++...+
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999998765433
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=1.7e-23 Score=189.51 Aligned_cols=195 Identities=12% Similarity=0.048 Sum_probs=146.6
Q ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhh
Q 009799 255 EAGNAAYKKKEFEKAIEHYSSALELDDEDIS-YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGT 333 (525)
Q Consensus 255 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (525)
.+|.++...|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|... .++...+.
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~~a~ 176 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH-------HVYVTAAL 176 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT-------HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-------HHHHHHHH
Confidence 3455566678889999999999999998886 889999999999999999999999998888763 23333332
Q ss_pred hHHH-hhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHH
Q 009799 334 ALVK-MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHY 412 (525)
Q Consensus 334 ~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 412 (525)
.... .++ +++|+..|++++. ..|+++.+|..+|.++...|++++|+.+|
T Consensus 177 ~~~~~~~~----~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 177 MEYYCSKD----KSVAFKIFELGLK--------------------------KYGDIPEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HHHHTSCC----HHHHHHHHHHHHH--------------------------HHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHcCC----HHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2211 344 7777777777777 77888888888998888889999999999
Q ss_pred HHHHhc---CC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Q 009799 413 TESLRR---NP-KDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (525)
Q Consensus 413 ~~al~~---~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 488 (525)
++++.. .| +...+|..++......|+++.|...++++++..|+++.... ++.+ ..-.+.+.++|
T Consensus 227 ~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~-----------~~r~~~l~~~P 294 (308)
T 2ond_A 227 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL-----------VDRYKFMDLYP 294 (308)
T ss_dssp HHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH-----------HTTTCBTTBCS
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH-----------HHHHHhcccCC
Confidence 999885 44 36778888888888889999999999999988887553321 1211 11126677888
Q ss_pred CCHHHHHHHH
Q 009799 489 QNQELLDGVR 498 (525)
Q Consensus 489 ~~~~~~~~l~ 498 (525)
+++.++..|+
T Consensus 295 ~~~~~ln~lg 304 (308)
T 2ond_A 295 CSASELKALG 304 (308)
T ss_dssp SCHHHHHTTT
T ss_pred CCHHHHHhcC
Confidence 8888877654
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=1.2e-23 Score=181.95 Aligned_cols=211 Identities=20% Similarity=0.223 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDD-EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
.+..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..+++++..+|++ ..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 78 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL-------ANA 78 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH-------HHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch-------HHH
Confidence 357899999999999999999999999999999 889999999999999999999999999999999986 788
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcH-------HHHHHhhhHHH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIA-------DEEREKGNEFF 400 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 400 (525)
+..+|.++...++ +++|+..|++++. .+|+++ .++..+|.++.
T Consensus 79 ~~~l~~~~~~~~~----~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 79 YIGKSAAYRDMKN----NQEYIATLTEGIK--------------------------AVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp HHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc----HHHHHHHHHHHHH--------------------------HCCCcHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999 9999999999998 788887 66999999999
Q ss_pred hcCChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 009799 401 KQQKYPEAIQHYTESLRRNPK--DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE 478 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 478 (525)
..|++++|+..|+++++.+|+ ++.++..+|.++...| ...++++..+.+..+..+ .+......+.+++|+.
T Consensus 129 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~ 201 (228)
T 4i17_A 129 QAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVD 201 (228)
T ss_dssp HTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8999999999997655 455677788877765544 4555667788999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHH
Q 009799 479 TYQEGLKHDPQNQELLDGVRRCVQQ 503 (525)
Q Consensus 479 ~~~~a~~~~p~~~~~~~~l~~~~~~ 503 (525)
+|+++++++|+++.+...++.+...
T Consensus 202 ~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 202 YLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988877543
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=2.1e-23 Score=188.87 Aligned_cols=256 Identities=9% Similarity=0.011 Sum_probs=213.6
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHhh-------cccH-------HHHHHHHHHhhc-cCCCCHHHHHHHHHHHhhh
Q 009799 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHAS-------LHNY-------ADALADAKKTVE-LKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 83 (525)
++|+..|++++..+|+++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 4775 999999999999 7999999999999999999
Q ss_pred hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHH
Q 009799 84 QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNM 163 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (525)
|++++|...|++++++.|.+..
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~---------------------------------------------------------- 134 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPT---------------------------------------------------------- 134 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTH----------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhccccCcc----------------------------------------------------------
Confidence 9999999999999999987653
Q ss_pred HHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHH
Q 009799 164 MKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEA 243 (525)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (525)
T Consensus 135 -------------------------------------------------------------------------------- 134 (308)
T 2ond_A 135 -------------------------------------------------------------------------------- 134 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHccccChhhHH
Q 009799 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLE-MGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
.+|..+|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|+.+|+++++..|++
T Consensus 135 -------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~----- 202 (308)
T 2ond_A 135 -------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI----- 202 (308)
T ss_dssp -------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-----
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----
Confidence 0244456667778999999999999999999998888877766544 699999999999999999988
Q ss_pred HHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCC-CcHHHHHHhhhHHHh
Q 009799 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP-KIADEEREKGNEFFK 401 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 401 (525)
..++..++..+...|+ +++|...|++++...+ ..| ....+|..++..+..
T Consensus 203 --~~~~~~~~~~~~~~g~----~~~A~~~~~~al~~~~-----------------------l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 203 --PEYVLAYIDYLSHLNE----DNNTRVLFERVLTSGS-----------------------LPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp --HHHHHHHHHHHHTTCC----HHHHHHHHHHHHHSSS-----------------------SCGGGCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHCCC----HHHHHHHHHHHHhccC-----------------------CCHHHHHHHHHHHHHHHHH
Confidence 5667777777777777 9999999999998311 144 367889999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009799 402 QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGA 465 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 465 (525)
.|+++.|..+++++++..|+++.... ++.+ ..+ .+.+.++|.++..+..+|.
T Consensus 254 ~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~---~~r--------~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 254 IGDLASILKVEKRRFTAFREEYEGKE-TALL---VDR--------YKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH---HTT--------TCBTTBCSSCHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHHcccccccch-HHHH---HHH--------HHhcccCCCCHHHHHhcCC
Confidence 99999999999999999998654431 1221 111 1567789999999887764
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=2.8e-23 Score=179.56 Aligned_cols=182 Identities=17% Similarity=0.256 Sum_probs=167.6
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-chhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSP-DNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAH 80 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (525)
++.++.+|..++..|+|++|+..|++++..+| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 36799999999999999999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHH
Q 009799 81 LGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDF 160 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (525)
..+|++++|+..|+++++++|+++..+..+
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-------------------------------------------------- 116 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLY-------------------------------------------------- 116 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHH--------------------------------------------------
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHH--------------------------------------------------
Confidence 999999999999999999999987654433
Q ss_pred HHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHH
Q 009799 161 RNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEE 240 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (525)
T Consensus 117 -------------------------------------------------------------------------------- 116 (228)
T 4i17_A 117 -------------------------------------------------------------------------------- 116 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHhcCH------------------
Q 009799 241 KEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE--DISYLTNRAAVYLEMGKY------------------ 300 (525)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~------------------ 300 (525)
+.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++...|+.
T Consensus 117 ---------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (228)
T 4i17_A 117 ---------AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYAS 187 (228)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHH
T ss_pred ---------HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 334667788999999999999999999999999 899999999999999988
Q ss_pred ---------HHHHHHHHHHHHccccChhhHH
Q 009799 301 ---------EECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 301 ---------~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
++|+.+++++++++|++.....
T Consensus 188 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 218 (228)
T 4i17_A 188 EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQ 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 9999999999999999855443
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=5.2e-24 Score=204.18 Aligned_cols=209 Identities=17% Similarity=0.180 Sum_probs=190.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccc
Q 009799 237 TEEEKEAKERKEKALKEKEAGNAAYKKKEF-EKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGR 315 (525)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 315 (525)
..+.......+..+..++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+|+++++++|
T Consensus 89 ~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p 168 (474)
T 4abn_A 89 QQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK 168 (474)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 333444445566789999999999999999 9999999999999999999999999999999999999999999999998
Q ss_pred cChhhHHHHHHHHHHhhhhHHHh---------hhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCC
Q 009799 316 ELRSDFKMIARALTRKGTALVKM---------AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP 386 (525)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 386 (525)
+ ..++..+|.++... ++ +++|+..|++++. .+|
T Consensus 169 ~--------~~~~~~lg~~~~~~~~~~~~~~~g~----~~~A~~~~~~al~--------------------------~~p 210 (474)
T 4abn_A 169 N--------KVSLQNLSMVLRQLQTDSGDEHSRH----VMDSVRQAKLAVQ--------------------------MDV 210 (474)
T ss_dssp C--------HHHHHHHHHHHTTCCCSCHHHHHHH----HHHHHHHHHHHHH--------------------------HCT
T ss_pred C--------HHHHHHHHHHHHHhccCChhhhhhh----HHHHHHHHHHHHH--------------------------hCC
Confidence 7 24566666666666 67 8888888888888 899
Q ss_pred CcHHHHHHhhhHHHhc--------CChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC
Q 009799 387 KIADEEREKGNEFFKQ--------QKYPEAIQHYTESLRRNP---KDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (525)
Q Consensus 387 ~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (525)
+++.++..+|.++... |++++|+..|+++++++| .++.+|+++|.++...|++++|+..|+++++++|+
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999 999999999999999999 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 456 FSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
++.++..++.++..+|++++|+..+.+.
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999877654
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=9.2e-23 Score=179.42 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=48.5
Q ss_pred CCch-hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCc
Q 009799 32 SPDN-HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (525)
Q Consensus 32 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 103 (525)
+|.+ +.+++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|.+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc
Confidence 4444 56666777777777777777777777777777666666677777766677777766666666665554
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=2.6e-22 Score=173.18 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=48.7
Q ss_pred CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCc
Q 009799 32 SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 103 (525)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 103 (525)
.|.++.+++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 75 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS 75 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 456666666777777777777777777777776666666666666666666666666666666666665554
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.91 E-value=2.5e-23 Score=195.03 Aligned_cols=250 Identities=13% Similarity=0.110 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhc---CCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHH
Q 009799 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALEL---DDE---DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
...++..|..+...|++++|+.+|++++.. .|+ ...++..+|.+|...|++++|+.++.+++++.+........
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 345667899999999999999999999987 222 45889999999999999999999999999998877654556
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (525)
.+.++..+|.++...|+ +++|+..|++++...+... ..+....++..+|.++...|
T Consensus 183 ~~~~~~~lg~~~~~~g~----~~~A~~~~~~al~~~~~~~--------------------~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQ----YEDAISHFQKAYSMAEAEK--------------------QPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHcC--------------------ChHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999 9999999999998432110 22334568899999999999
Q ss_pred ChhHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcC
Q 009799 404 KYPEAIQHYTESLR-----RN-PKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD-----PTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 404 ~~~~A~~~~~~al~-----~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~ 472 (525)
++++|+.+|+++++ .+ |..+.++.++|.++..+|++++|+.++++++.+. |.....+..+|.++...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 99999999999998 45 7778899999999999999999999999999883 4444456789999999999
Q ss_pred ---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHhhhcc
Q 009799 473 ---YDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQVSL 524 (525)
Q Consensus 473 ---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 524 (525)
+++|+..+++. ...|....++..++.++...|+..+|....+++.+...++
T Consensus 319 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 319 EEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 88999999887 5556667889999999999999999988877777654443
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=2.2e-23 Score=206.96 Aligned_cols=173 Identities=23% Similarity=0.317 Sum_probs=112.6
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHH
Q 009799 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI 324 (525)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 324 (525)
..|+.+.++.++|.++...|++++|+..|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------- 76 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------- 76 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 3566667777777777777777777777777777777777777777777777777777777777777666665
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (525)
+.++.++|.++..+++ +++|+..|+++++ .+|+++.++.++|.++...|+
T Consensus 77 ~~a~~nLg~~l~~~g~----~~~A~~~~~kAl~--------------------------l~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQD----VQGALQCYTRAIQ--------------------------INPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCC
Confidence 5566666666666666 6666666666665 556666666666666666666
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCC
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP 454 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 454 (525)
+++|+..|+++++++|+++.++.++|.++..+|++++|.+.+++++++.|
T Consensus 127 ~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 66666666666666666666666666666666666666666666655544
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.90 E-value=3.2e-22 Score=176.71 Aligned_cols=206 Identities=13% Similarity=0.136 Sum_probs=176.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC---HHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYSR 75 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 75 (525)
++.++.+|..++..|+|++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|+++++.+|++ +.+++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 4678999999999999999999999999999998 8999999999999999999999999999998854 678999
Q ss_pred HHHHHhh--------hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhccc
Q 009799 76 LGAAHLG--------LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTA 147 (525)
Q Consensus 76 la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
+|.++.. .|++++|+..|+++++.+|++..+...+..+....
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~------------------------------ 144 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR------------------------------ 144 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH------------------------------
Confidence 9999999 99999999999999999999876544433221111
Q ss_pred CCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCC
Q 009799 148 DPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPES 227 (525)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (525)
T Consensus 145 -------------------------------------------------------------------------------- 144 (261)
T 3qky_A 145 -------------------------------------------------------------------------------- 144 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHh-------
Q 009799 228 EPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE---DISYLTNRAAVYLEM------- 297 (525)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~------- 297 (525)
......++.+|.++...|++++|+..|+++++..|+ .+.+++.+|.+|...
T Consensus 145 -------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~ 205 (261)
T 3qky_A 145 -------------------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA 205 (261)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG
T ss_pred -------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh
Confidence 123455788999999999999999999999999998 467999999999977
Q ss_pred ---cCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhh
Q 009799 298 ---GKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAK 340 (525)
Q Consensus 298 ---~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (525)
|++++|+..|+++++..|+++.. ..+...++.++..+++
T Consensus 206 ~~~~~~~~A~~~~~~~~~~~p~~~~~----~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 206 RQPERYRRAVELYERLLQIFPDSPLL----RTAEELYTRARQRLTE 247 (261)
T ss_dssp GHHHHHHHHHHHHHHHHHHCTTCTHH----HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999999999999988644 3455566665555555
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.90 E-value=5.9e-22 Score=175.02 Aligned_cols=217 Identities=14% Similarity=0.115 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
.+..+..++.+|..++..|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++...|+++..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-- 88 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV-- 88 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh--
Confidence 34567889999999999999999999999999999999 8999999999999999999999999999999976543
Q ss_pred HHHHHHHHhhhhHHH--------hhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHH
Q 009799 323 MIARALTRKGTALVK--------MAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEERE 394 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 394 (525)
..+++.+|.++.. .++ +++|+..|++++. ..|+++.+...
T Consensus 89 --~~a~~~lg~~~~~~~~~~~~~~~~----~~~A~~~~~~~l~--------------------------~~p~~~~~~~a 136 (261)
T 3qky_A 89 --PQAEYERAMCYYKLSPPYELDQTD----TRKAIEAFQLFID--------------------------RYPNHELVDDA 136 (261)
T ss_dssp --HHHHHHHHHHHHHHCCCTTSCCHH----HHHHHHHHHHHHH--------------------------HCTTCTTHHHH
T ss_pred --HHHHHHHHHHHHHhcccccccchh----HHHHHHHHHHHHH--------------------------HCcCchhHHHH
Confidence 5788889998888 777 8999999888888 45554433322
Q ss_pred hhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHh-
Q 009799 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT---FSKGYTRKGAIQFFL- 470 (525)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~- 470 (525)
++.+.... +.....++.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.+|..+
T Consensus 137 ~~~~~~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 137 TQKIRELR-----------------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHHHHH-----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 22211111 111233678888888888888888888888888887 456888888888876
Q ss_pred ---------cCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHhhhhcccCCC
Q 009799 471 ---------KEYDKALETYQEGLKHDPQNQ---ELLDGVRRCVQQINKAGRGELS 513 (525)
Q Consensus 471 ---------g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~ 513 (525)
|++++|+..|+++++.+|+++ .+...++.++..+++..++...
T Consensus 200 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 200 EQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp HTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred ccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 888999999999999999984 5667788888888887665543
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=1.6e-22 Score=200.78 Aligned_cols=174 Identities=23% Similarity=0.292 Sum_probs=166.1
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhc
Q 009799 279 LDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (525)
Q Consensus 279 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (525)
..|+++.++.++|.++..+|++++|+..|+++++++|++ +.++.++|.++..+|+ +++|+..|+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-------~~a~~nLg~~l~~~g~----~~eA~~~~~~Al~- 71 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-------AAAHSNLASVLQQQGK----LQEALMHYKEAIR- 71 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH-
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH-
Confidence 468999999999999999999999999999999999998 6788888888888888 9999999999999
Q ss_pred CCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 009799 359 HRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA 438 (525)
Q Consensus 359 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 438 (525)
.+|+++.+++++|.++..+|++++|++.|+++++++|+++.+|.++|.++..+|+
T Consensus 72 -------------------------l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 72 -------------------------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp -------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Q 009799 439 MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 489 (525)
+++|+..|+++++++|+++.++.++|.++..+|++++|.+.|++++++.|+
T Consensus 127 ~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999999999999999999999999987554
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.89 E-value=1e-20 Score=176.74 Aligned_cols=319 Identities=9% Similarity=0.003 Sum_probs=241.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh-----HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCH------
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH-----VLYSNRSAAHASLHNYADALADAKKTVELKPDWS------ 70 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------ 70 (525)
++.+..+|..++..|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++.+.|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 35677889999999999999999999999877543 3678899999999999999999999998866432
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCC
Q 009799 71 KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPT 150 (525)
Q Consensus 71 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
.++..+|.++...|++++|+..+++++...+.....
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-------------------------------------------- 129 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE-------------------------------------------- 129 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT--------------------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc--------------------------------------------
Confidence 346789999999999999999999998754211000
Q ss_pred cccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCC
Q 009799 151 TRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPE 230 (525)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (525)
T Consensus 130 -------------------------------------------------------------------------------- 129 (373)
T 1hz4_A 130 -------------------------------------------------------------------------------- 129 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHhcCHHHHHH
Q 009799 231 PEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE-----DISYLTNRAAVYLEMGKYEECIK 305 (525)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~~~~~~A~~ 305 (525)
..+.....+..+|.++...|++++|..++++++...|. ...++..+|.++...|++++|..
T Consensus 130 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 195 (373)
T 1hz4_A 130 --------------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 195 (373)
T ss_dssp --------------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 00134556777899999999999999999999988765 24678899999999999999999
Q ss_pred HHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcC
Q 009799 306 DCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFD 385 (525)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 385 (525)
.+++++...+................+.++...|+ +++|...+.+++...+.. .
T Consensus 196 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~A~~~~~~a~~~~~~~----------------------~ 249 (373)
T 1hz4_A 196 QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD----KAAAANWLRHTAKPEFAN----------------------N 249 (373)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHSCCCCCTT----------------------C
T ss_pred HHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC----HHHHHHHHHhCCCCCCCc----------------------c
Confidence 99999987544221111112222334455666777 999999999888743221 0
Q ss_pred CCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHH
Q 009799 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK------DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKG 459 (525)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (525)
+.....+..+|.++...|++++|...+++++...+. ...++..+|.++...|++++|...+++++.+.+..
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~--- 326 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT--- 326 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc---
Confidence 112335678899999999999999999999876442 12478889999999999999999999998875421
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH
Q 009799 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 491 (525)
.....+...| +.....+++.+...|.+.
T Consensus 327 --g~~~~~~~~g--~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 327 --GFISHFVIEG--EAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp --CCCHHHHTTH--HHHHHHHHHHHHTTCSCH
T ss_pred --cHHHHHHHcc--HHHHHHHHHHHhCCCCch
Confidence 1112333344 677788888888888744
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=4e-22 Score=181.26 Aligned_cols=260 Identities=18% Similarity=0.162 Sum_probs=185.9
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc--------
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISL--------SPDNHVLYSNRSAAHASLHNYADALADAKKTVEL-------- 65 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 65 (525)
++.+..+|..++..|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999999994 6778899999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhc
Q 009799 66 KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKL 145 (525)
Q Consensus 66 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (525)
.|....++..+|.++...|++++|+..|++++++.... .
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------~---------------------------- 145 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-------------L---------------------------- 145 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------H----------------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-------------c----------------------------
Confidence 45667899999999999999999999999998642100 0
Q ss_pred ccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCC
Q 009799 146 TADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKP 225 (525)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (525)
T Consensus 146 -------------------------------------------------------------------------------- 145 (311)
T 3nf1_A 146 -------------------------------------------------------------------------------- 145 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHh
Q 009799 226 ESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL--------DDEDISYLTNRAAVYLEM 297 (525)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~ 297 (525)
....+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...
T Consensus 146 -----------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 208 (311)
T 3nf1_A 146 -----------------GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ 208 (311)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 0001346677888999999999999999999999998 677778999999999999
Q ss_pred cCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHH
Q 009799 298 GKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKE 377 (525)
Q Consensus 298 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 377 (525)
|++++|+..+++++...|...... ....... .
T Consensus 209 g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~-----------~-------------------------------- 240 (311)
T 3nf1_A 209 GKFKQAETLYKEILTRAHEREFGS-----VDDENKP-----------I-------------------------------- 240 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC-----------CC-----------H--------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCC-----CCcchHH-----------H--------------------------------
Confidence 999999999999998755421000 0000000 0
Q ss_pred HHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC
Q 009799 378 LEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (525)
Q Consensus 378 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (525)
......+...+..+...+.+.+|+..++.++...|..+.++..+|.++...|++++|+.+|++++++.|.
T Consensus 241 --------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 --------WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 0011222233344445566666666666666666666667777777777777777777777777666553
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=183.13 Aligned_cols=272 Identities=18% Similarity=0.126 Sum_probs=199.0
Q ss_pred cCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCC
Q 009799 31 LSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--------KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 102 (525)
Q Consensus 31 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 102 (525)
.+|....++..+|.++...|++++|+..+++++++ .|....++..+|.++...|++++|+..|++++.....
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46777899999999999999999999999999984 6777889999999999999999999999999865210
Q ss_pred cHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHH
Q 009799 103 NEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQR 182 (525)
Q Consensus 103 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (525)
..
T Consensus 102 ~~------------------------------------------------------------------------------ 103 (311)
T 3nf1_A 102 TL------------------------------------------------------------------------------ 103 (311)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred Hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 009799 183 VMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYK 262 (525)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (525)
....+....++..+|.++..
T Consensus 104 ------------------------------------------------------------~~~~~~~~~~~~~l~~~~~~ 123 (311)
T 3nf1_A 104 ------------------------------------------------------------GKDHPAVAATLNNLAVLYGK 123 (311)
T ss_dssp ------------------------------------------------------------CTTCHHHHHHHHHHHHHHHT
T ss_pred ------------------------------------------------------------CCCChHHHHHHHHHHHHHHH
Confidence 00013466778889999999
Q ss_pred cccHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccC-hhhHHHHHHHHHHhhh
Q 009799 263 KKEFEKAIEHYSSALELD--------DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGREL-RSDFKMIARALTRKGT 333 (525)
Q Consensus 263 ~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 333 (525)
.|++++|+.++++++... |....++..+|.++...|++++|+.++++++...... .........++..+|.
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999874 5567889999999999999999999999999872211 0001122678889999
Q ss_pred hHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHH
Q 009799 334 ALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYT 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 413 (525)
++...|+ +++|+..+++++...+... .....+.....+.
T Consensus 204 ~~~~~g~----~~~A~~~~~~al~~~~~~~-----------------~~~~~~~~~~~~~-------------------- 242 (311)
T 3nf1_A 204 CYLKQGK----FKQAETLYKEILTRAHERE-----------------FGSVDDENKPIWM-------------------- 242 (311)
T ss_dssp HHHHHTC----HHHHHHHHHHHHHHHHHHH-----------------HC------CCHHH--------------------
T ss_pred HHHHcCC----HHHHHHHHHHHHHHHHHhc-----------------CCCCCcchHHHHH--------------------
Confidence 9999999 9999999999987311100 0000111111111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Q 009799 414 ESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 414 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 489 (525)
....+...+..+...+.+.+|...+.+++..+|..+.++..+|.+|...|++++|+.+|++++++.|+
T Consensus 243 --------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 243 --------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12334455566677888999999999999999999999999999999999999999999999999875
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.88 E-value=2.6e-21 Score=180.75 Aligned_cols=213 Identities=19% Similarity=0.172 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE-------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
..+.++..+|.++...|+++.|+.++++++...+. ...++..+|.++...|++++|+..+++++.+.+....
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~- 217 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN- 217 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-
Confidence 46677889999999999999999999999987543 2457889999999999999999999999998664422
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
....+.++..+|.++...++ +++|+.++++++...... .+|..+.++..+|.++.
T Consensus 218 ~~~~~~~~~~lg~~y~~~~~----~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 218 DRFIAISLLNIANSYDRSGD----DQMAVEHFQKAAKVSREK---------------------VPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHH---------------------CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHhh---------------------CChhHHHHHHHHHHHHH
Confidence 22458899999999999999 999999999998732110 35666889999999999
Q ss_pred hcCChhHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCC---chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 401 KQQKYPEAIQHYTESLRRNPK-----DPRTYSNRAACYTKLGA---MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
..|++++|+.+++++++..+. ....+..++.++...++ +.+|+.++++. ...|....++..+|.+|...|+
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCC
Confidence 999999999999999998543 34556778888888888 88888888772 3334556788899999999999
Q ss_pred HHHHHHHHHHHhccC
Q 009799 473 YDKALETYQEGLKHD 487 (525)
Q Consensus 473 ~~~A~~~~~~a~~~~ 487 (525)
+++|..+|+++++..
T Consensus 352 ~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 352 FEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 73
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.88 E-value=2.4e-22 Score=160.30 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=129.0
Q ss_pred hhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHH
Q 009799 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQ 410 (525)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 410 (525)
+|.++...++ +++|+..+++++. .+|+.+..++.+|.+|+..|++++|+.
T Consensus 3 LG~~~~~~~~----~e~ai~~~~~a~~--------------------------~~p~~~~~~~~la~~y~~~~~~~~A~~ 52 (150)
T 4ga2_A 3 LGSMRRSKAD----VERYIASVQGSTP--------------------------SPRQKSIKGFYFAKLYYEAKEYDLAKK 52 (150)
T ss_dssp ----CCCHHH----HHHHHHHHHHHSC--------------------------SHHHHHTTHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHcCh----HHHHHHHHHHhcc--------------------------cCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444445555 6666666666666 888999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH-HHHHhccCCC
Q 009799 411 HYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALET-YQEGLKHDPQ 489 (525)
Q Consensus 411 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~p~ 489 (525)
+|+++++++|+++.+|..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|... ++++++++|+
T Consensus 53 ~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 53 YICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999887765 5999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 009799 490 NQELLDGVRRCVQQINK 506 (525)
Q Consensus 490 ~~~~~~~l~~~~~~~~~ 506 (525)
++.++...+.++...|+
T Consensus 133 ~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999999887664
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.88 E-value=3.3e-21 Score=172.76 Aligned_cols=229 Identities=12% Similarity=0.077 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE------DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
-...+...|.++...|++++|+.+|.+++.+.+. ...++..+|.+|...|++++|+.+|++++.+.|.... ..
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~ 114 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FR 114 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HH
Confidence 4455666788999999999999999999988532 2578999999999999999999999999999876432 23
Q ss_pred HHHHHHHHhhhhHHHh-hhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh
Q 009799 323 MIARALTRKGTALVKM-AKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (525)
..+.++..+|.++... ++ +++|+.+|++++...|... ..+....++..+|.++..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~----~~~A~~~~~~Al~~~~~~~--------------------~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHD----YAKAIDCYELAGEWYAQDQ--------------------SVALSNKCFIKCADLKAL 170 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcC----HHHHHHHHHHHHHHHHhCC--------------------ChHHHHHHHHHHHHHHHH
Confidence 3477899999999995 99 9999999999998432100 001125678899999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHH-----HHHHHHHHH-
Q 009799 402 QQKYPEAIQHYTESLRRNPKDPR-------TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKG-----YTRKGAIQF- 468 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~- 468 (525)
.|++++|+.+|+++++..|++.. ++.++|.++..+|++++|+.+|+++++++|+.... +..++..+.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHc
Confidence 99999999999999999987653 67899999999999999999999999999986653 445666664
Q ss_pred -HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009799 469 -FLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (525)
Q Consensus 469 -~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 502 (525)
..+++++|+..|++++.++|.+..++..+.+.+.
T Consensus 251 ~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~ 285 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQ 285 (292)
T ss_dssp TCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhh
Confidence 4678999999999999999998888887777663
No 75
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=1.4e-19 Score=182.88 Aligned_cols=340 Identities=17% Similarity=0.138 Sum_probs=221.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhH
Q 009799 7 AKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDY 86 (525)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 86 (525)
..|..+...|.|++|..+|+++-. +. . .+...+...|++++|+++++++ +.+.+|+.+|.++...|++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~--~~--~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV--NT--S---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC--HH--H---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCH
Confidence 358889999999999999998731 11 1 1122233666667776666654 4466677777777777777
Q ss_pred HHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHH
Q 009799 87 IEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKD 166 (525)
Q Consensus 87 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (525)
++|+..|.++ +++..+..++.++...|++ ..++.-+..+
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGky------------------------------------EEAIeyL~mA 1160 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNW------------------------------------EELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHHHHHHcCCH------------------------------------HHHHHHHHHH
Confidence 7777777654 5566666666666666554 2233333333
Q ss_pred HhhCCCc-hhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHH
Q 009799 167 IQRNPNN-LNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKE 245 (525)
Q Consensus 167 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (525)
.+..++. +... .+..+...+.+. .....+ .
T Consensus 1161 rk~~~e~~Idt~--LafaYAKl~rle----------------------------------------------ele~fI-~ 1191 (1630)
T 1xi4_A 1161 RKKARESYVETE--LIFALAKTNRLA----------------------------------------------ELEEFI-N 1191 (1630)
T ss_pred HhhcccccccHH--HHHHHHhhcCHH----------------------------------------------HHHHHH-h
Confidence 3322221 0000 000000000000 000000 0
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
. .....+..+|..+...|+|++|..+|.++ ..|..+|.++..+|++++|++.+.++.. .
T Consensus 1192 ~-~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n------------~ 1250 (1630)
T 1xi4_A 1192 G-PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS------------T 1250 (1630)
T ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC------------H
Confidence 1 12234556788888888888888888875 4677788888888888888888887722 3
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.+|...+.++...++ +..|..+... +. .+++.+..++..|...|.+
T Consensus 1251 ~aWkev~~acve~~E----f~LA~~cgl~-Ii-----------------------------v~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKE----FRLAQMCGLH-IV-----------------------------VHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHHHHHHhhhhH----HHHHHHHHHh-hh-----------------------------cCHHHHHHHHHHHHHcCCH
Confidence 555666666666666 7777776654 22 2344555788889999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCchHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhcCHHHHHH
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTK--LGAMPEGLKDADKCIELDP-----TFSKGYTRKGAIQFFLKEYDKALE 478 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~ 478 (525)
++|+.+++.++.++|.+...+..+|.++.+ .++..++++.|...+.+.| .++..|..+..+|.+-|+++.|+.
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999999888888775 4567888888888888877 678889999999999999999995
Q ss_pred HHHHHhcc------------CCCCHHHHHHHHHHHHH
Q 009799 479 TYQEGLKH------------DPQNQELLDGVRRCVQQ 503 (525)
Q Consensus 479 ~~~~a~~~------------~p~~~~~~~~l~~~~~~ 503 (525)
.+-..... .+.++++++.....+..
T Consensus 1377 tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1377 TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 44444332 57788888877776653
No 76
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.88 E-value=1.4e-20 Score=161.74 Aligned_cols=188 Identities=12% Similarity=0.060 Sum_probs=162.4
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh---HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHH---HHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH---VLYSNRSAAHASLHNYADALADAKKTVELKPDWSK---GYSR 75 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 75 (525)
++.++.+|..++..|+|++|+..|++++...|+++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 46889999999999999999999999999988764 78999999999999999999999999999999865 7899
Q ss_pred HHHHHhh------------------hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCccccccc
Q 009799 76 LGAAHLG------------------LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFA 137 (525)
Q Consensus 76 la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (525)
+|.++.. .|++++|+..|+++++.+|+++.+...+..+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~-------------------- 143 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK-------------------- 143 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH--------------------
Confidence 9999886 57999999999999999999876554332221111
Q ss_pred CchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCC
Q 009799 138 GPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPET 217 (525)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (525)
T Consensus 144 -------------------------------------------------------------------------------- 143 (225)
T 2yhc_A 144 -------------------------------------------------------------------------------- 143 (225)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH---HHHHHHHHHH
Q 009799 218 SKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVY 294 (525)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~ 294 (525)
.......+.+|.+++..|++++|+..|+++++..|+++ .++..+|.++
T Consensus 144 -----------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 144 -----------------------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY 194 (225)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence 11223446789999999999999999999999999986 6799999999
Q ss_pred HHhcCHHHHHHHHHHHHHccccCh
Q 009799 295 LEMGKYEECIKDCDKAVERGRELR 318 (525)
Q Consensus 295 ~~~~~~~~A~~~~~~~l~~~~~~~ 318 (525)
..+|++++|+..++.+....|++.
T Consensus 195 ~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 195 RQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHcCCcHHHHHHHHHHHhhCCCch
Confidence 999999999999999999888764
No 77
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=2.4e-20 Score=164.59 Aligned_cols=82 Identities=10% Similarity=-0.089 Sum_probs=54.7
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHh-cCCCCHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPE-AIQHYTESLRRN---PKDPRTYSNRAACYTKLGAMPEGLKDADKCIE-LDPTFSK 458 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~ 458 (525)
.+|.+..+|+.++.++...|+... ....+.+++... |.++.++..++.++.+.|+.++|+++|+.+.+ .+|-...
T Consensus 215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~ 294 (306)
T 3dra_A 215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSN 294 (306)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHH
Confidence 666667777777777766666444 334555555554 66777777777777777777777777777775 6777777
Q ss_pred HHHHHHH
Q 009799 459 GYTRKGA 465 (525)
Q Consensus 459 ~~~~la~ 465 (525)
.|...+.
T Consensus 295 yW~~~~~ 301 (306)
T 3dra_A 295 FWDYQIS 301 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.87 E-value=3.3e-20 Score=173.19 Aligned_cols=286 Identities=10% Similarity=0.008 Sum_probs=229.1
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCH-----HHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhH
Q 009799 36 HVLYSNRSAAHASLHNYADALADAKKTVELKPDWS-----KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGL 110 (525)
Q Consensus 36 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 110 (525)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|.....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---- 89 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---- 89 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH----
Confidence 46778899999999999999999999999887653 267889999999999999999999998865432111
Q ss_pred HhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHH
Q 009799 111 ADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVL 190 (525)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (525)
T Consensus 90 -------------------------------------------------------------------------------- 89 (373)
T 1hz4_A 90 -------------------------------------------------------------------------------- 89 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHH
Q 009799 191 LNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAI 270 (525)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 270 (525)
.....++..+|.++...|++++|+
T Consensus 90 --------------------------------------------------------~~~~~~~~~la~~~~~~G~~~~A~ 113 (373)
T 1hz4_A 90 --------------------------------------------------------HYALWSLIQQSEILFAQGFLQTAW 113 (373)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHCCCHHHHH
Confidence 023455677899999999999999
Q ss_pred HHHHHHhhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcc
Q 009799 271 EHYSSALELD--------DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (525)
Q Consensus 271 ~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
..+++++... |....++..+|.++...|++++|...+++++...+...... ...++..+|.++...|+
T Consensus 114 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~g~-- 189 (373)
T 1hz4_A 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ--QLQCLAMLIQCSLARGD-- 189 (373)
T ss_dssp HHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG--GHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH--HHHHHHHHHHHHHHcCC--
Confidence 9999999874 33456788899999999999999999999999887653322 25678889999999999
Q ss_pred cchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHH--HHHhhhHHHhcCChhHHHHHHHHHHhcCC
Q 009799 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADE--EREKGNEFFKQQKYPEAIQHYTESLRRNP 420 (525)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 420 (525)
+++|...+++++...+... .+..... ...++.++...|++++|...+++++...|
T Consensus 190 --~~~A~~~l~~a~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 190 --LDNARSQLNRLENLLGNGK---------------------YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp --HHHHHHHHHHHHHHHTTSC---------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred --HHHHHHHHHHHHHHHhccC---------------------cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 9999999999987422100 1100111 12345668899999999999999998776
Q ss_pred CC----HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Q 009799 421 KD----PRTYSNRAACYTKLGAMPEGLKDADKCIELDPT------FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (525)
Q Consensus 421 ~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 488 (525)
.. ...+..+|.++...|++++|...+++++...+. ...++..+|.++...|++++|...|++++.+.+
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 53 235688999999999999999999999877432 235788899999999999999999999998755
No 79
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=1.9e-20 Score=165.22 Aligned_cols=208 Identities=9% Similarity=0.021 Sum_probs=183.0
Q ss_pred HHHHHhcc--cHHHHHHHHHHHhhcCCCCHHHHHHHHHHH----HHh---cCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 257 GNAAYKKK--EFEKAIEHYSSALELDDEDISYLTNRAAVY----LEM---GKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 257 ~~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
|.++...+ ++++++.++..++..+|.+..+|..++.++ ... +++++++..+.++++.+|++ ..+
T Consensus 74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~a 146 (306)
T 3dra_A 74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHV 146 (306)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHH
Confidence 44444455 888999999999999999999999999988 666 78999999999999999999 677
Q ss_pred HHHhhhhHHHhhhcccchH--HHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC-
Q 009799 328 LTRKGTALVKMAKCSKDYE--PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK- 404 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 404 (525)
|..++.+...++. ++ +++.++.++++ .+|.+..+|...+.++...+.
T Consensus 147 W~~R~~vl~~l~~----~~~~~EL~~~~~~i~--------------------------~d~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 147 WSYRKWLVDTFDL----HNDAKELSFVDKVID--------------------------TDLKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHHHHHHHHHTTC----TTCHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHhcc----cChHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHhcccc
Confidence 7777777777777 77 88888888887 899999999999999999987
Q ss_pred -----hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHH
Q 009799 405 -----YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPE-GLKDADKCIELD---PTFSKGYTRKGAIQFFLKEYDK 475 (525)
Q Consensus 405 -----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~ 475 (525)
++++++++.+++..+|.+..+|+.++.++...|+..+ ...++.+++.++ |.++.++..++.++.+.|+.++
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 9999999999999999999999999999999999665 556777788776 8899999999999999999999
Q ss_pred HHHHHHHHhc-cCCCCHHHHHHHHHHH
Q 009799 476 ALETYQEGLK-HDPQNQELLDGVRRCV 501 (525)
Q Consensus 476 A~~~~~~a~~-~~p~~~~~~~~l~~~~ 501 (525)
|+++|+.+.+ .+|-+...|...+..+
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 9999999996 8999999998776543
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=2.8e-21 Score=163.74 Aligned_cols=116 Identities=22% Similarity=0.201 Sum_probs=110.1
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHH----------------HHHHHhhcccHHHHHHHHHHhhcc
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSN----------------RSAAHASLHNYADALADAKKTVEL 65 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 65 (525)
++.++.+|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHH
Q 009799 66 KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (525)
Q Consensus 66 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (525)
+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..++.++...
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888777765544
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=2e-21 Score=174.17 Aligned_cols=238 Identities=15% Similarity=0.109 Sum_probs=182.2
Q ss_pred CHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCC------CHHHHHHHHHHHhhhhhHHHHH
Q 009799 17 DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD------WSKGYSRLGAAHLGLQDYIEAV 90 (525)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 90 (525)
++++|+..|+++ |.++...|++++|+..|++++.+.+. ...++..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888877 67889999999999999999988532 2578999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhC
Q 009799 91 NSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRN 170 (525)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (525)
.+|++++++.|....
T Consensus 98 ~~~~~Al~l~~~~g~----------------------------------------------------------------- 112 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQ----------------------------------------------------------------- 112 (292)
T ss_dssp HHHHHHHHHHHHTTC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCC-----------------------------------------------------------------
Confidence 999999986542210
Q ss_pred CCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHH
Q 009799 171 PNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKA 250 (525)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (525)
....+
T Consensus 113 ---------------------------------------------------------------------------~~~~a 117 (292)
T 1qqe_A 113 ---------------------------------------------------------------------------FRRGA 117 (292)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 01245
Q ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHH
Q 009799 251 LKEKEAGNAAYKK-KEFEKAIEHYSSALELDDED------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 251 ~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
.++..+|.++... |++++|+.+|++++++.|.+ ..++..+|.++..+|++++|+.+|++++...|++......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5678899999996 99999999999999998764 4678999999999999999999999999999887543323
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH--h
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF--K 401 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 401 (525)
...++..+|.++...|+ +++|+..|++++.+.|... .......+..++..+. .
T Consensus 198 ~~~~~~~lg~~~~~~g~----~~~A~~~~~~al~l~p~~~---------------------~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATD----AVAAARTLQEGQSEDPNFA---------------------DSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHGGGCC------------------------------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCCCCC---------------------CcHHHHHHHHHHHHHHcCC
Confidence 35678899999999999 9999999999998444311 0001123344455443 4
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 402 QQKYPEAIQHYTESLRRNPKDPRTYSNRAACY 433 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 433 (525)
.+++++|+..|++++.++|....++..+-...
T Consensus 253 ~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp TTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 56788888888888888776665555544443
No 82
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=2.8e-21 Score=148.60 Aligned_cols=120 Identities=46% Similarity=0.879 Sum_probs=116.3
Q ss_pred hhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHH
Q 009799 382 EIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYT 461 (525)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (525)
..++|+.+..+..+|..++..|+|++|+..|+++++.+|.++.+|.++|.++..+|++++|+..|+++++++|+++.+++
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009799 462 RKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501 (525)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 501 (525)
.+|.++..+|++++|+.+|+++++++|++++++..++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998875
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.86 E-value=4e-21 Score=179.52 Aligned_cols=248 Identities=12% Similarity=0.057 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDD------EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFK 322 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 322 (525)
....++..|..+...|++++|+.+|++++...+ ....++..+|.+|...|++++|+.++++++...+.......
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 344677899999999999999999999998743 24578999999999999999999999999999887654444
Q ss_pred HHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhc
Q 009799 323 MIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ 402 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 402 (525)
..+.++..+|.++...++ +++|+..|++++...+.. ...+....++..+|.++...
T Consensus 180 ~~~~~~~~lg~~y~~~~~----~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKH----YDKALPHLEAALELAMDI--------------------QNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHC
Confidence 568999999999999999 999999999999832110 01223456889999999999
Q ss_pred CChhHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcC
Q 009799 403 QKYPEAIQHYTESLR-----RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELD-----PTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 403 ~~~~~A~~~~~~al~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~ 472 (525)
|++++|+.+|++++. .+|..+.++..+|.++..+|++++|+.++++++++. |.....+..++.++...|+
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999 778788999999999999999999999999999984 4445567788888888898
Q ss_pred ---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHhh
Q 009799 473 ---YDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGELSPEELKERQ 521 (525)
Q Consensus 473 ---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 521 (525)
+.+|+.++++. ...|....+...++.++...|+..+|....++..+-.
T Consensus 316 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 316 ERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 89999999883 4455667788899999999999999988777766643
No 84
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=5.2e-21 Score=191.50 Aligned_cols=184 Identities=11% Similarity=0.034 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHh--------hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChh
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSAL--------ELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 319 (525)
..+.+++..| ...|++++|+..+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-- 466 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR-- 466 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--
Confidence 3344455555 78899999999999999 8999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHH
Q 009799 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEF 399 (525)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (525)
..+++.+|.++...++ +++|+..|+++++ .+|+++.++..+|.++
T Consensus 467 -----~~a~~~lg~~~~~~g~----~~~A~~~~~~al~--------------------------l~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 467 -----WRLVWYRAVAELLTGD----YDSATKHFTEVLD--------------------------TFPGELAPKLALAATA 511 (681)
T ss_dssp -----HHHHHHHHHHHHHHTC----HHHHHHHHHHHHH--------------------------HSTTCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHH
Confidence 6788888888888888 9999999999999 8999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 400 FKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
...|++++ +..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|++..+++++|.++...|+
T Consensus 512 ~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999977655
No 85
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=5.3e-19 Score=178.83 Aligned_cols=244 Identities=14% Similarity=0.107 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHH----
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMI---- 324 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~---- 324 (525)
...+|..+|..+...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++..... .+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt-~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET-ELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH-HHHHHH
Confidence 3455566666666666666666666553 5555666666666666666666666666555443310000 00
Q ss_pred -----------------HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCC
Q 009799 325 -----------------ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK 387 (525)
Q Consensus 325 -----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 387 (525)
...+...|..+...++ |++|..+|.++-....-..++..+|++++|++.+.++ .
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~----YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-----~ 1248 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM----YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----N 1248 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCC----HHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh-----C
Confidence 1233456666666666 7777777777654444455666677777777777766 4
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 467 (525)
+..+|...+.++...|+|..|..+... +.. +++.+..++..|...|.+++|+.++++++.++|.+...+..+|.++
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence 456777777777777777777776653 333 3455667888888889999999999888888888888888888777
Q ss_pred HH--hcCHHHHHHHHHHHhccCC-----CCHHHHHHHHHHHHHhhhhcccC
Q 009799 468 FF--LKEYDKALETYQEGLKHDP-----QNQELLDGVRRCVQQINKAGRGE 511 (525)
Q Consensus 468 ~~--~g~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~~~~~~a~ 511 (525)
.+ -++..++++.|...+.+.| ++...|..+..+|.+.++.+.|.
T Consensus 1325 aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 65 5678888888888888877 77888888888888888777665
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=2.5e-20 Score=157.91 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (525)
.+..++..|..++..|++++|+..|++++..+|+++.+++..+. . ... . ......
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~----------------~~~-~---~~~~~~ 57 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----D----------------KNS-E---ISSKLA 57 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----C----------------TTS-H---HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----c----------------chh-h---hhHHHH
Confidence 34566677777777777777777777777777777766655321 0 000 0 013445
Q ss_pred HHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHH
Q 009799 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEA 408 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 408 (525)
..+|.++...|+ +++|+..|+++++ .+|+++.++..+|.++...|++++|
T Consensus 58 ~~lg~~~~~~g~----~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A 107 (208)
T 3urz_A 58 TELALAYKKNRN----YDKAYLFYKELLQ--------------------------KAPNNVDCLEACAEMQVCRGQEKDA 107 (208)
T ss_dssp HHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHCCC----HHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 568888888888 9999999999998 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 409 IQHYTESLRRNPKDPRTYSNRAACYTKLGA--MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 409 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
+..|+++++++|+++.+++.+|.+|...|+ ...+...+.+++...|. ..+++.+|.++...|++++|+.+|++++++
T Consensus 108 ~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 108 LRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999987764 45677788887654332 347888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 009799 487 DPQNQELLDGVRRC 500 (525)
Q Consensus 487 ~p~~~~~~~~l~~~ 500 (525)
+|++ ++...+.++
T Consensus 187 ~P~~-~~~~~l~~i 199 (208)
T 3urz_A 187 FPST-EAQKTLDKI 199 (208)
T ss_dssp SCCH-HHHHHHHHH
T ss_pred CCCH-HHHHHHHHH
Confidence 9984 344445544
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.86 E-value=4.7e-20 Score=158.49 Aligned_cols=211 Identities=9% Similarity=-0.005 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI---SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
.+..++.+|..++..|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|++... .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~----~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----D 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH----H
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH----H
Confidence 356789999999999999999999999999998874 789999999999999999999999999999987643 3
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.+++.+|.++...+. . .+..... ........|++++|+..|++++...|+++.++..+..+....+
T Consensus 79 ~a~~~~g~~~~~~~~----~-----~~~~~~~---~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-- 144 (225)
T 2yhc_A 79 YVMYMRGLTNMALDD----S-----ALQGFFG---VDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-- 144 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhh----h-----hhhhhhc---cchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--
Confidence 567777777665543 1 1111110 0111222344444444444444455555433322111100000
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHH
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS---KGYTRKGAIQFFLKEYDKALETYQE 482 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~ 482 (525)
........+|.++...|++++|+..|+++++..|+++ .+++.+|.++..+|++++|+..+++
T Consensus 145 ---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 145 ---------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0012236789999999999999999999999999986 6799999999999999999999999
Q ss_pred HhccCCCCHH
Q 009799 483 GLKHDPQNQE 492 (525)
Q Consensus 483 a~~~~p~~~~ 492 (525)
+....|++.+
T Consensus 210 l~~~~~~~~~ 219 (225)
T 2yhc_A 210 IAANSSNTLE 219 (225)
T ss_dssp HHHCCSCCCC
T ss_pred HHhhCCCchh
Confidence 9999998653
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=4e-21 Score=192.34 Aligned_cols=188 Identities=12% Similarity=-0.048 Sum_probs=172.5
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHH
Q 009799 278 ELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAV--------ERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAI 349 (525)
Q Consensus 278 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 349 (525)
..+|+++.+++..+ ...|++++|+..+++++ ..+|++ ..++..+|.++...++ +++|+
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-------~~~~~~~a~~~~~~g~----~~~A~ 453 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSES-------VELPLMEVRALLDLGD----VAKAT 453 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTC-------SHHHHHHHHHHHHHTC----HHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccc-------hhHHHHHHHHHHhcCC----HHHHH
Confidence 56888888888777 78999999999999999 888988 5667777777777777 99999
Q ss_pred HHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 350 ETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNR 429 (525)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 429 (525)
..|+++++ .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++
T Consensus 454 ~~~~~al~--------------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 507 (681)
T 2pzi_A 454 RKLDDLAE--------------------------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL 507 (681)
T ss_dssp HHHHHHHH--------------------------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred HHHHHHhc--------------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 430 AACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
|.++..+|++++ +..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++...+.
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999866554
No 89
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=1.4e-21 Score=177.40 Aligned_cols=309 Identities=16% Similarity=0.120 Sum_probs=148.9
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHH
Q 009799 11 AAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (525)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 90 (525)
..-..|+.++|..++++. +++.+|..+|.++...|++++|++.|.++ .++..+...+..+...|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 345678899999999998 34579999999999999999999999874 46678999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhC
Q 009799 91 NSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRN 170 (525)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (525)
.+++.+.+..++ +.+...++.++.+.|+....... +.
T Consensus 82 ~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f----------------------------------------~~-- 118 (449)
T 1b89_A 82 KYLQMARKKARE-SYVETELIFALAKTNRLAELEEF----------------------------------------IN-- 118 (449)
T ss_dssp ----------------------------CHHHHTTT----------------------------------------TT--
T ss_pred HHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHH----------------------------------------Hc--
Confidence 999999885433 56666777777777654211100 00
Q ss_pred CCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHH
Q 009799 171 PNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKA 250 (525)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (525)
.| ..
T Consensus 119 ---------------------------------------------------------------------------~p-n~ 122 (449)
T 1b89_A 119 ---------------------------------------------------------------------------GP-NN 122 (449)
T ss_dssp ---------------------------------------------------------------------------CC---
T ss_pred ---------------------------------------------------------------------------CC-cH
Confidence 00 22
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHH
Q 009799 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTR 330 (525)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 330 (525)
.++..+|..++..|+|++|..+|.++ ..|..+|.++.++|++++|++.+.++ .+ ..+|..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~-------~~~Wk~ 182 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NS-------TRTWKE 182 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TC-------HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CC-------chhHHH
Confidence 37888999999999999999999976 47889999999999999999999999 23 355566
Q ss_pred hhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHH
Q 009799 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQ 410 (525)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 410 (525)
.+.++...++ ++.|..+... +. .+|+. ...++..|.+.|++++|+.
T Consensus 183 v~~aCv~~~e----f~lA~~~~l~-L~--------------------------~~ad~---l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 183 VCFACVDGKE----FRLAQMCGLH-IV--------------------------VHADE---LEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHHHHTTC----HHHHHHTTTT-TT--------------------------TCHHH---HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCc----HHHHHHHHHH-HH--------------------------hCHhh---HHHHHHHHHHCCCHHHHHH
Confidence 6666666666 9988665543 22 33333 3457788999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH--cCCchHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 411 HYTESLRRNPKDPRTYSNRAACYTK--LGAMPEGLKDADKCIELDP-----TFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 411 ~~~~al~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
+++.++.+++.+..++..+|.+|.+ .++..+.++.|...+.+.| .++..|..+..+|...++++.|+...-..
T Consensus 229 lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 229 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 9999999999999999999988875 4567778888877777777 77888999999999999999999877776
Q ss_pred hcc------------CCCCHHHHHHHHHHHH
Q 009799 484 LKH------------DPQNQELLDGVRRCVQ 502 (525)
Q Consensus 484 ~~~------------~p~~~~~~~~l~~~~~ 502 (525)
... .+.|.++++.....+.
T Consensus 309 ~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 309 PTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 555 6777887777666655
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=6.6e-20 Score=152.77 Aligned_cols=173 Identities=13% Similarity=0.162 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
.....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 75 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN---------- 75 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------
Confidence 4566677777777777777777777777777777777777777777777777777777777766655543
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (525)
+.++..+|.++...|++++
T Consensus 76 -------------------------------------------------------------~~~~~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 76 -------------------------------------------------------------VKVATVLGLTYVQVQKYDL 94 (186)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHTCHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHhcCHHH
Confidence 4444455555556666666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Q 009799 408 AIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (525)
Q Consensus 408 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (525)
|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|..+++++++++
T Consensus 95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCH
Q 009799 488 PQNQ 491 (525)
Q Consensus 488 p~~~ 491 (525)
|+++
T Consensus 175 ~~~~ 178 (186)
T 3as5_A 175 EGAS 178 (186)
T ss_dssp HCCC
T ss_pred CCch
Confidence 6554
No 91
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.84 E-value=1.4e-20 Score=144.78 Aligned_cols=113 Identities=36% Similarity=0.682 Sum_probs=109.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
|+++.++|..++..|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (525)
.+|++++|+..|+++++++|++.+++..++.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999998887663
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=1e-19 Score=151.58 Aligned_cols=152 Identities=17% Similarity=0.186 Sum_probs=110.2
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Q 009799 234 MELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVER 313 (525)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 313 (525)
.++..........|....++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+..+++++..
T Consensus 26 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 105 (186)
T 3as5_A 26 QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105 (186)
T ss_dssp HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34444455555667778899999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHH
Q 009799 314 GRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEER 393 (525)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 393 (525)
.|.+ ..++..+|.++...++ +++|+..+++++. ..|.++.++.
T Consensus 106 ~~~~-------~~~~~~~a~~~~~~~~----~~~A~~~~~~~~~--------------------------~~~~~~~~~~ 148 (186)
T 3as5_A 106 NPIN-------FNVRFRLGVALDNLGR----FDEAIDSFKIALG--------------------------LRPNEGKVHR 148 (186)
T ss_dssp CTTC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHH
T ss_pred CcHh-------HHHHHHHHHHHHHcCc----HHHHHHHHHHHHh--------------------------cCccchHHHH
Confidence 7765 4455555555555555 5555555555555 4445555555
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCCCC
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKD 422 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 422 (525)
.+|.++...|++++|+.+++++++..|++
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 55555555555555555555555554443
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=6.7e-21 Score=151.85 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=131.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHh
Q 009799 289 NRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKL 368 (525)
Q Consensus 289 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (525)
.||.++...|++++|+..+++++...|+. ...++.+|.+|...++ +++|+..|+++++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-------~~~~~~la~~y~~~~~----~~~A~~~~~~al~----------- 59 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK-------SIKGFYFAKLYYEAKE----YDLAKKYICTYIN----------- 59 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH-------HTTHHHHHHHHHHTTC----HHHHHHHHHHHHH-----------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH-----------
Confidence 47888889999999999999999988877 4556677777777777 9999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHH-HH
Q 009799 369 NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKD-AD 447 (525)
Q Consensus 369 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~ 447 (525)
.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|... ++
T Consensus 60 ---------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 60 ---------------VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp ---------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred ---------------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999887765 59
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcC
Q 009799 448 KCIELDPTFSKGYTRKGAIQFFLKE 472 (525)
Q Consensus 448 ~al~~~p~~~~~~~~la~~~~~~g~ 472 (525)
++++++|+++.++..++.++...|+
T Consensus 125 ~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 125 RAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999988885
No 94
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.83 E-value=3.7e-20 Score=146.28 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=116.6
Q ss_pred HHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 009799 366 KKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKD 445 (525)
Q Consensus 366 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 445 (525)
..+.++..+-..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++..+|++++|+.+
T Consensus 13 ~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~ 92 (151)
T 3gyz_A 13 TAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADL 92 (151)
T ss_dssp HHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHH
Confidence 33344444445567777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH
Q 009799 446 ADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 446 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 491 (525)
|+++++++|+++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 93 ~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 93 YAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999875
No 95
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.83 E-value=3.2e-16 Score=153.83 Aligned_cols=442 Identities=10% Similarity=-0.008 Sum_probs=283.2
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh---HHHHHHHHH
Q 009799 18 YEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD---YIEAVNSYK 94 (525)
Q Consensus 18 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 94 (525)
..+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|.....|...+......|+ ++.+...|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HhhccCC--CcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhh-CC
Q 009799 95 KGLDIDP--NNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQR-NP 171 (525)
Q Consensus 95 ~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 171 (525)
+++...| .+.+.|..........+...... +... -.....++.++..+.. ++
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~--------------~~~r-----------~~vr~~FErAl~~vG~~d~ 182 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGG--------------EEAR-----------NIVIQAFQVVVDKCAIFEP 182 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTH--------------HHHH-----------HHHHHHHHHHHHHTTTTCS
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhccccccc--------------chhH-----------HHHHHHHHHHHHHhCcccc
Confidence 9999994 67778877766555443210000 0000 0001233333333334 44
Q ss_pred CchhHHhhHHHHH---------------HHHHHHHhhhccCCCCCC--------ccccccccCCC---CCCC---c----
Q 009799 172 NNLNLYLKDQRVM---------------QALGVLLNVKFKGPTGGD--------DVEMQDEDAPK---GPET---S---- 218 (525)
Q Consensus 172 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~---~~~~---~---- 218 (525)
.....+.....+. .....+.......|.... ..+..+..... ..+. .
T Consensus 183 ~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar 262 (679)
T 4e6h_A 183 KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNAR 262 (679)
T ss_dssp SCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHH
Confidence 4333322221111 111111111111111000 00000000000 0000 0
Q ss_pred ---hh---hccCCCCCCCCCC--hhhhHHHHHHHHhHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhhcCCCC
Q 009799 219 ---KE---ETRKPESEPEPEP--MELTEEEKEAKERKEKALKEKEAGNAAYKKK-------EFEKAIEHYSSALELDDED 283 (525)
Q Consensus 219 ---~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~~~l~~~p~~ 283 (525)
.. ............+ ...................|..........+ ..+.....|++++...|.+
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~ 342 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA 342 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCC
Confidence 00 0000000000000 0000000000001122334444433333222 2345678899999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHH-HHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC---
Q 009799 284 ISYLTNRAAVYLEMGKYEECI-KDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH--- 359 (525)
Q Consensus 284 ~~~~~~la~~~~~~~~~~~A~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--- 359 (525)
+.+|+..+..+...|+.++|. .+|++++...|.+ ..++...+......++ ++.|...|++++...
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~----~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTK----IPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 9999999999987 3455556666666666 999999999998742
Q ss_pred --------CC-----------h--------hHHHHhchHHHHHHHHHHHhhc-CCCcHHHHHHhhhHHHhcC-ChhHHHH
Q 009799 360 --------RN-----------P--------DTLKKLNEAEKAKKELEQQEIF-DPKIADEEREKGNEFFKQQ-KYPEAIQ 410 (525)
Q Consensus 360 --------~~-----------~--------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~A~~ 410 (525)
|. . ......+..+.|...|.++++. .+....+|...|.+....+ +++.|..
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ 491 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACK 491 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHH
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHH
Confidence 31 0 1123456778888888888877 4455677777777766665 4889999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Q 009799 411 HYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT---FSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (525)
Q Consensus 411 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (525)
+|+.+++..|+++..|...+......|+.+.|..+|++++...|+ ....|......-...|+.+.+...++++.+..
T Consensus 492 ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 492 VLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999988888888888888889999999999999988773 45677777777788899999999999999999
Q ss_pred CCCHHHHH
Q 009799 488 PQNQELLD 495 (525)
Q Consensus 488 p~~~~~~~ 495 (525)
|+++.+..
T Consensus 572 P~~~~~~~ 579 (679)
T 4e6h_A 572 PEVNKLEE 579 (679)
T ss_dssp TTCCHHHH
T ss_pred CCCcHHHH
Confidence 98765443
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.83 E-value=1e-17 Score=148.41 Aligned_cols=167 Identities=11% Similarity=0.061 Sum_probs=146.1
Q ss_pred HHHHHhcCCHH-HHHHHHHHHhccCCchhHHHHHHHHHHhhccc----------HHHHHHHHHHhhccCCCCHHHHHHHH
Q 009799 9 GNAAFSSGDYE-AAVRHFTEAISLSPDNHVLYSNRSAAHASLHN----------YADALADAKKTVELKPDWSKGYSRLG 77 (525)
Q Consensus 9 g~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la 77 (525)
.......|++. +|+..+.+++..+|++..+|..++.++..+|. +++++..+..++..+|++..+|..++
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34445677776 79999999999999999999999999998877 68999999999999999999999999
Q ss_pred HHHhhhhh--HHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCccccc
Q 009799 78 AAHLGLQD--YIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYL 155 (525)
Q Consensus 78 ~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
.++...|+ +++++.++.++++.+|.|..+|...+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~------------------------------------------- 152 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF------------------------------------------- 152 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHH-------------------------------------------
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------------------------------------------
Confidence 99999994 899999999999999998877765543
Q ss_pred chHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChh
Q 009799 156 DQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPME 235 (525)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (525)
T Consensus 153 -------------------------------------------------------------------------------- 152 (331)
T 3dss_A 153 -------------------------------------------------------------------------------- 152 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh--------------cCH
Q 009799 236 LTEEEKEAKERKEKALKEKEAGNAAYKKKE-FEKAIEHYSSALELDDEDISYLTNRAAVYLEM--------------GKY 300 (525)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------~~~ 300 (525)
+....|. +++++.++.++++.+|.|..+|..++.++... +.+
T Consensus 153 -----------------------vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~ 209 (331)
T 3dss_A 153 -----------------------VAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL 209 (331)
T ss_dssp -----------------------HHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHH
T ss_pred -----------------------HHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHH
Confidence 3334455 68999999999999999999999999999887 568
Q ss_pred HHHHHHHHHHHHccccChhhH
Q 009799 301 EECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 301 ~~A~~~~~~~l~~~~~~~~~~ 321 (525)
+++++++.+++..+|++...+
T Consensus 210 ~eEle~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 210 LKELELVQNAFFTDPNDQSAW 230 (331)
T ss_dssp HHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999995444
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=1.2e-19 Score=162.45 Aligned_cols=165 Identities=19% Similarity=0.168 Sum_probs=140.0
Q ss_pred HhcCCHHHHHHHHHHHhcc--------CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc--------CCCCHHHHHHH
Q 009799 13 FSSGDYEAAVRHFTEAISL--------SPDNHVLYSNRSAAHASLHNYADALADAKKTVEL--------KPDWSKGYSRL 76 (525)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 76 (525)
...|++++|+..|++++.. +|..+.++..+|.++...|++++|+..+++++.. +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888888873 3667899999999999999999999999999977 46667899999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccc
Q 009799 77 GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLD 156 (525)
Q Consensus 77 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
|.++...|++++|+..|++++.......
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------------------------- 119 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVL---------------------------------------------------- 119 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHc----------------------------------------------------
Confidence 9999999999999999999986521000
Q ss_pred hHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhh
Q 009799 157 QDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMEL 236 (525)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (525)
T Consensus 120 -------------------------------------------------------------------------------- 119 (283)
T 3edt_B 120 -------------------------------------------------------------------------------- 119 (283)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 009799 237 TEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL--------DDEDISYLTNRAAVYLEMGKYEECIKDCD 308 (525)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 308 (525)
....|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..++
T Consensus 120 ------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (283)
T 3edt_B 120 ------GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193 (283)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0001356677889999999999999999999999998 67778899999999999999999999999
Q ss_pred HHHHccc
Q 009799 309 KAVERGR 315 (525)
Q Consensus 309 ~~l~~~~ 315 (525)
+++...+
T Consensus 194 ~~l~~~~ 200 (283)
T 3edt_B 194 EILTRAH 200 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998744
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.82 E-value=2.8e-17 Score=145.64 Aligned_cols=262 Identities=13% Similarity=0.052 Sum_probs=174.5
Q ss_pred hhcccHH-HHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh----------HHHHHHHHHHhhccCCCcHHHHhhHHhHHH
Q 009799 47 ASLHNYA-DALADAKKTVELKPDWSKGYSRLGAAHLGLQD----------YIEAVNSYKKGLDIDPNNEALKSGLADAKA 115 (525)
Q Consensus 47 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 115 (525)
...|++. +|+..+.+++.++|++..+|..++.++...|. +++++.++..++..+|++..+|...+.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl-- 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL-- 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH--
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH--
Confidence 4556655 79999999999999999999999999998877 6888889999988888887776655433
Q ss_pred HHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhc
Q 009799 116 AASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKF 195 (525)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (525)
T Consensus 118 -------------------------------------------------------------------------------- 117 (331)
T 3dss_A 118 -------------------------------------------------------------------------------- 117 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcc--cHHHHHHHH
Q 009799 196 KGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKK--EFEKAIEHY 273 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~ 273 (525)
+...+ .+++++.++
T Consensus 118 ----------------------------------------------------------------L~~l~~~~~~~EL~~~ 133 (331)
T 3dss_A 118 ----------------------------------------------------------------LSRLPEPNWARELELC 133 (331)
T ss_dssp ----------------------------------------------------------------HHHCSSCCHHHHHHHH
T ss_pred ----------------------------------------------------------------HhccCcccHHHHHHHH
Confidence 33344 489999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 009799 274 SSALELDDEDISYLTNRAAVYLEMGK-YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETF 352 (525)
Q Consensus 274 ~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 352 (525)
.++++.+|.|..+|..++.+....|. +++++.++.+++..+|.+. .+|..++.++..... ...+-
T Consensus 134 ~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~-------SAW~~R~~ll~~l~~----~~~~~--- 199 (331)
T 3dss_A 134 ARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-------SSWHYRSCLLPQLHP----QPDSG--- 199 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH-------HHHHHHHHHHHHHSC----CC------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHhhh----ccccc---
Confidence 99999999999999999999999999 6999999999999999994 555555555444421 00000
Q ss_pred HHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhc-CChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009799 353 QKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQ-QKYPEAIQHYTESLRRNPKDPRTYSNRAA 431 (525)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~ 431 (525)
...-...+.++++++++.+++..+|++..+|+.+..++... |.. . ++
T Consensus 200 ---------~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~---------------~-------~~- 247 (331)
T 3dss_A 200 ---------PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC---------------E-------LS- 247 (331)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG---------------G-------CC-
T ss_pred ---------cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc---------------c-------cc-
Confidence 00000012334444444455559999999998666655544 210 0 00
Q ss_pred HHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009799 432 CYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF---FLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501 (525)
Q Consensus 432 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 501 (525)
-...+.++++++++++++++.|++..++..++.+.. ..|..++...++.+.+++||....-+..+....
T Consensus 248 -~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 248 -VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 011223455555555555555555444333333222 235566667777777777777666665554443
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=1.3e-18 Score=155.53 Aligned_cols=236 Identities=17% Similarity=0.168 Sum_probs=182.4
Q ss_pred CCCCChhhhHHHHHHH--------HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc--------CCCCHHHHHHHHH
Q 009799 229 PEPEPMELTEEEKEAK--------ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL--------DDEDISYLTNRAA 292 (525)
Q Consensus 229 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~ 292 (525)
.+....++......+. ..|..+.++..+|.++...|++++|+.++++++.. .|....++..+|.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 3445566666666555 34888999999999999999999999999999987 3666788999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHccccChh-hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchH
Q 009799 293 VYLEMGKYEECIKDCDKAVERGRELRS-DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEA 371 (525)
Q Consensus 293 ~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (525)
++...|++++|+..+.+++........ .......++..+|.++...++ +++|+.++++++...
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~------------ 157 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK----AEEVEYYYRRALEIY------------ 157 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC----HHHHHHHHHHHHHHH------------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHH------------
Confidence 999999999999999999987421100 001227889999999999999 999999999998831
Q ss_pred HHHHHHHHHHh-hcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCchH
Q 009799 372 EKAKKELEQQE-IFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR---------NPKDPRTYSNRAACYTKLGAMPE 441 (525)
Q Consensus 372 ~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~~~~~~ 441 (525)
.... ...|....++..+|.++...|++++|+.+++++++. .+.....+..++..+...+....
T Consensus 158 -------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (283)
T 3edt_B 158 -------ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRD 230 (283)
T ss_dssp -------HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC
T ss_pred -------HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhH
Confidence 0000 026667889999999999999999999999999986 45556778888887776665444
Q ss_pred HH------HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Q 009799 442 GL------KDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHD 487 (525)
Q Consensus 442 A~------~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (525)
+. ..+.......|..+.++..+|.++..+|++++|+.+|++++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 231 SAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 43 33333333456677899999999999999999999999998763
No 100
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.80 E-value=3.8e-19 Score=141.08 Aligned_cols=133 Identities=9% Similarity=0.021 Sum_probs=120.8
Q ss_pred HHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC
Q 009799 377 ELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (525)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (525)
.+++++..+|.++..++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45566669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009799 457 SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (525)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (525)
+.+++.+|.++..+|++++|+.+|+++++++|+++........+...+.....
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988776666666665554433
No 101
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=3.1e-20 Score=168.67 Aligned_cols=228 Identities=11% Similarity=0.051 Sum_probs=135.9
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHH
Q 009799 257 GNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (525)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (525)
+..+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++..+++. |+ ..++..+|..+.
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn--------~~a~~~IGd~~~ 133 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN--------NAHIQQVGDRCY 133 (449)
T ss_dssp ------------------------------------------CHHHHTTTTTC-----C---------------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc--------HHHHHHHHHHHH
Confidence 33444566777777777766664333 55666677777777777776666632 32 236666666666
Q ss_pred HhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHH
Q 009799 337 KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (525)
Q Consensus 337 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 416 (525)
..|. |++|..+|.++-....-..++..+|++++|++.+.++ .++.+|...+.++...|+++.|..+... +
T Consensus 134 ~~g~----yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L 203 (449)
T 1b89_A 134 DEKM----YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-I 203 (449)
T ss_dssp ---C----TTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-T
T ss_pred HcCC----HHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-H
Confidence 6666 7777777776633333345666777777777777776 3688999999999999999999877765 3
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHhccCC-----C
Q 009799 417 RRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF--LKEYDKALETYQEGLKHDP-----Q 489 (525)
Q Consensus 417 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~p-----~ 489 (525)
..+| .-...+..+|.+.|++++|+.++++++.+++.+...+..+|.+|.+ .++..++++.|...+.+.| +
T Consensus 204 ~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~ 280 (449)
T 1b89_A 204 VVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE 280 (449)
T ss_dssp TTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444 4455788999999999999999999999999999999999998875 6788999999999999999 8
Q ss_pred CHHHHHHHHHHHHHhhhhcccC
Q 009799 490 NQELLDGVRRCVQQINKAGRGE 511 (525)
Q Consensus 490 ~~~~~~~l~~~~~~~~~~~~a~ 511 (525)
+...|..+..++...++.+.|.
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHH
Confidence 8999999999998888877654
No 102
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.79 E-value=3.6e-17 Score=145.43 Aligned_cols=203 Identities=6% Similarity=-0.064 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcc-
Q 009799 266 FEKAIEHYSSALELDDEDISYLTNRAAVYLEM-G-KYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS- 342 (525)
Q Consensus 266 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 342 (525)
+++++.++..++..+|.+..+|..++.++... + ++++++.++.++++.+|.+ ..+|..++.+....+...
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccc
Confidence 45555555555555555555555555555554 4 5555555555555555555 333333333333333300
Q ss_pred ---cchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC-------hhHHHHHH
Q 009799 343 ---KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK-------YPEAIQHY 412 (525)
Q Consensus 343 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~ 412 (525)
..+.++++++.++++ .+|.+..+|..++.++...++ ++++++++
T Consensus 178 ~~~~~~~eELe~~~k~I~--------------------------~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~ 231 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLR--------------------------VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYI 231 (349)
T ss_dssp CCHHHHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 003366666666666 899999999999999999987 79999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCc--------------------hHHHHHHHHHHhcC------CCCHHHHHHHHHH
Q 009799 413 TESLRRNPKDPRTYSNRAACYTKLGAM--------------------PEGLKDADKCIELD------PTFSKGYTRKGAI 466 (525)
Q Consensus 413 ~~al~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~al~~~------p~~~~~~~~la~~ 466 (525)
.+++..+|++..+|+.+..++...|+. ..-...+...+... +.++.++..++.+
T Consensus 232 ~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 311 (349)
T 3q7a_A 232 LKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADS 311 (349)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHH
Confidence 999999999999999999999988875 22222222222222 4678899999999
Q ss_pred HHHhcCHHHHHHHHHHHh-ccCCCCHHHHHHHHHHH
Q 009799 467 QFFLKEYDKALETYQEGL-KHDPQNQELLDGVRRCV 501 (525)
Q Consensus 467 ~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~ 501 (525)
|...|+.++|.+.++... +.||-....|......+
T Consensus 312 ~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~ 347 (349)
T 3q7a_A 312 FIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC 347 (349)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence 999999999999999987 78999888888766543
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=1.1e-18 Score=143.72 Aligned_cols=166 Identities=11% Similarity=0.020 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHH
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 326 (525)
+.....++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~------- 74 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS------- 74 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH-------
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH-------
Confidence 344556778888888888888888888888888888888888888888888888888888888888877 532
Q ss_pred HHHHhhhhHH-HhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 327 ALTRKGTALV-KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 327 ~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.+...+.+.. ..+. ..+|+..+++++. .+|+++.+++.+|.++...|++
T Consensus 75 ~~~~~~~~~~~~~~~----~~~a~~~~~~al~--------------------------~~P~~~~~~~~la~~~~~~g~~ 124 (176)
T 2r5s_A 75 YKSLIAKLELHQQAA----ESPELKRLEQELA--------------------------ANPDNFELACELAVQYNQVGRD 124 (176)
T ss_dssp HHHHHHHHHHHHHHT----SCHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhcc----cchHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcccH
Confidence 1111121111 1111 1223333333333 4455555555555555555555
Q ss_pred hHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 009799 406 PEAIQHYTESLRRNPKD--PRTYSNRAACYTKLGAMPEGLKDADKCI 450 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al 450 (525)
++|+..|+++++.+|+. +.++..+|.++..+|+.++|+..|++++
T Consensus 125 ~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 125 EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 55555555555555443 3345555555555555555555555444
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=1.8e-18 Score=142.27 Aligned_cols=168 Identities=13% Similarity=0.067 Sum_probs=144.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcC
Q 009799 280 DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEH 359 (525)
Q Consensus 280 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 359 (525)
+|.....++.+|..+...|++++|+..|++++..+|++ ..++..+|.++...|+ +++|+..+++++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~----~~~A~~~~~~a~~-- 68 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSR-------GDVKLAKADCLLETKQ----FELAQELLATIPL-- 68 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-------HHHHHHHHHHHHHTTC----HHHHHHHHTTCCG--
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHCCC----HHHHHHHHHHhhh--
Confidence 34555678899999999999999999999999999998 6777778888888888 9999999999988
Q ss_pred CChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH-hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 009799 360 RNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF-KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGA 438 (525)
Q Consensus 360 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 438 (525)
..| ++..+..++.+.. ..+...+|+..++++++.+|+++.+++.+|.++...|+
T Consensus 69 ------------------------~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 69 ------------------------EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR 123 (176)
T ss_dssp ------------------------GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 666 6666555554432 33455678999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 439 MPEGLKDADKCIELDPTF--SKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 439 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
+++|+..|+++++.+|+. +.++..+|.++..+|+.++|+..|++++.
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999976 56999999999999999999999999875
No 105
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.78 E-value=1.6e-18 Score=136.91 Aligned_cols=132 Identities=12% Similarity=0.085 Sum_probs=120.0
Q ss_pred HHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC
Q 009799 376 KELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT 455 (525)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 455 (525)
..+.+++..+|.+...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34566677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009799 456 FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (525)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 507 (525)
++.+++.+|.++..+|++++|+.+|+++++++|+++........+...++..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987777776666665543
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=1.4e-17 Score=148.54 Aligned_cols=100 Identities=19% Similarity=0.105 Sum_probs=60.6
Q ss_pred CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC--HHHHHH
Q 009799 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF--SKGYTR 462 (525)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~ 462 (525)
+|+........+..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++ ..++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 333333333444445555556666666666666666666666666666666666666666666666666665 556666
Q ss_pred HHHHHHHhcCHHHHHHHHHHHh
Q 009799 463 KGAIQFFLKEYDKALETYQEGL 484 (525)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~ 484 (525)
+|.++...|+.++|...|++++
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 6666666666666666666654
No 107
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.77 E-value=5.4e-18 Score=145.61 Aligned_cols=219 Identities=7% Similarity=-0.013 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHH-------HHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNR-------AAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
+....++..|.-+ ..+++..|...|.+++..+|+..++|..+ +.++...++..+++..+.+.+.+.|.....
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 3445566667765 68999999999999999999999999999 899999999999999999999988875332
Q ss_pred HHH--------------HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCC
Q 009799 321 FKM--------------IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP 386 (525)
Q Consensus 321 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 386 (525)
... ...+....+.++...++ +++|.+.|...+. ..|
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~----y~eA~~~l~~~~~--------------------------~~p 133 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGN----YADAMEALEAAPV--------------------------AGS 133 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTC----HHHHHHHHTSSCC--------------------------TTC
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCC----HHHHHHHHHHHHh--------------------------cCC
Confidence 221 12344445556666666 8888777777766 778
Q ss_pred CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHhcC--CC-CHHHHH
Q 009799 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD--PRTYSNRAACYTKLGAMPEGLKDADKCIELD--PT-FSKGYT 461 (525)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~ 461 (525)
.+. ..+.+|.+++..++|++|+..|+.+....+.. ..+++++|.++..+|++++|+.+|++++... |. .+.+++
T Consensus 134 ~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~ 212 (282)
T 4f3v_A 134 EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAW 212 (282)
T ss_dssp HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 888 99999999999999999999999887653221 3589999999999999999999999998654 65 667999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009799 462 RKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRR 499 (525)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 499 (525)
.+|.++..+|+.++|...|++++..+|+ +.+...|..
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 9999999999999999999999999999 887776643
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.77 E-value=5.8e-18 Score=152.82 Aligned_cols=193 Identities=16% Similarity=0.103 Sum_probs=121.3
Q ss_pred HHHHhcccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHh
Q 009799 258 NAAYKKKEFEKAIEHYSSALELDDED------ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRK 331 (525)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (525)
.++...|++++|+..|.+++.+.+.. ..++..+|.+|...|++++|+.+|++++.+.+.... ....+.++..+
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~l 122 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRA 122 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 34444455555555555555443221 235555666666666666666666666665443211 12235667777
Q ss_pred hhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHH
Q 009799 332 GTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQH 411 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 411 (525)
|.++.. ++ +++|+.+|++++...+... ..+....++..+|.++...|++++|+.+
T Consensus 123 g~~~~~-g~----~~~A~~~~~~Al~~~~~~~--------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 177 (307)
T 2ifu_A 123 GKLMEP-LD----LSKAVHLYQQAAAVFENEE--------------------RLRQAAELIGKASRLLVRQQKFDEAAAS 177 (307)
T ss_dssp HHHHTT-TC----HHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHc-CC----HHHHHHHHHHHHHHHHhCC--------------------ChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777766 66 7777777777776322100 0011256778888888889999999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHhcCHHHHHH
Q 009799 412 YTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK-----GYTRKGAIQFFLKEYDKALE 478 (525)
Q Consensus 412 ~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~ 478 (525)
|++++.+.|.+ ..++..+|.++..+|++++|+.+|++++ ++|.... .+..++..+ ..|+.+.+..
T Consensus 178 ~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99888876543 2477888888888999999999999999 8886542 344455544 4566554443
No 109
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.77 E-value=6.1e-17 Score=143.95 Aligned_cols=234 Identities=12% Similarity=0.020 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMG-KYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
++...++.....+....+..++|+..+.+++.++|++..+|..++.++...| .+++++..++.++..+|++ .
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-------y 123 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-------Y 123 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-------H
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-------H
Confidence 4566667777777777788899999999999999999999999999999999 5999999999999999999 5
Q ss_pred HHHHHhhhhHHHh-h-hcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC
Q 009799 326 RALTRKGTALVKM-A-KCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (525)
Q Consensus 326 ~~~~~~~~~~~~~-~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (525)
.+|..++.++... + . +++++.++.+++. .+|.+..+|...+.++...|
T Consensus 124 ~aW~hR~wlL~~l~~~~----~~~EL~~~~k~L~--------------------------~dpkNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQD----PVSEIEYIHGSLL--------------------------PDPKNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp HHHHHHHHHHHHHCCSC----CHHHHHHHHHHTS--------------------------SCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC----hHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhc
Confidence 6677777766665 5 5 7888888888887 89999999999999999999
Q ss_pred Chh--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------chHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009799 404 KYP--------EAIQHYTESLRRNPKDPRTYSNRAACYTKLGA-------MPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (525)
Q Consensus 404 ~~~--------~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 468 (525)
.++ ++++++.++++.+|.|..+|..++.+....+. ++++++++.+++..+|++..+|+.+..++.
T Consensus 174 ~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 174 TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888 99999999999999999999999999999987 689999999999999999999999999998
Q ss_pred HhcCH--------------------HHHHHHHHHHhccC------CCCHHHHHHHHHHHHHhhhhcccCCChHHH
Q 009799 469 FLKEY--------------------DKALETYQEGLKHD------PQNQELLDGVRRCVQQINKAGRGELSPEEL 517 (525)
Q Consensus 469 ~~g~~--------------------~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 517 (525)
..|+. .+-.......+... +.++.++..++.++...++..+|....+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 254 HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 87764 22333333333322 578899999999999888765555444443
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.76 E-value=9.4e-17 Score=136.12 Aligned_cols=190 Identities=15% Similarity=0.056 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchH
Q 009799 267 EKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (525)
Q Consensus 267 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++.. + +.+++.+|.+|.. +....+++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~-------~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--D-------GDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--C-------HHHHHHHHHHTTS-STTSCCHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHc-CCCCCCHH
Confidence 4578889988875 789999999999999999999999999998753 3 5778888888877 51122499
Q ss_pred HHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh----cCChhHHHHHHHHHHhcCC--
Q 009799 347 PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK----QQKYPEAIQHYTESLRRNP-- 420 (525)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~-- 420 (525)
+|+.+|+++.. +.++.+++.+|.+|.. .+++++|+.+|+++++..|
T Consensus 71 ~A~~~~~~A~~----------------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 122 (212)
T 3rjv_A 71 QARQLAEKAVE----------------------------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD 122 (212)
T ss_dssp HHHHHHHHHHH----------------------------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH
T ss_pred HHHHHHHHHHH----------------------------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc
Confidence 99999999865 4678899999999998 8999999999999999888
Q ss_pred CCHHHHHHHHHHHHH----cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-c-----CHHHHHHHHHHHhccCCCC
Q 009799 421 KDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFL-K-----EYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 421 ~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a~~~~p~~ 490 (525)
.++.+++++|.+|.. .+++++|+.+|+++++. |.++.+++.+|.+|..- | ++++|+.+|+++.+.. +
T Consensus 123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~ 199 (212)
T 3rjv_A 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--F 199 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--C
T ss_pred chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--C
Confidence 358999999999999 88999999999999998 77788999999999864 3 8999999999999884 4
Q ss_pred HHHHHHHHH
Q 009799 491 QELLDGVRR 499 (525)
Q Consensus 491 ~~~~~~l~~ 499 (525)
+.+...+..
T Consensus 200 ~~A~~~l~~ 208 (212)
T 3rjv_A 200 DTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=1.9e-17 Score=147.62 Aligned_cols=169 Identities=11% Similarity=0.077 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
.|.....++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+. .
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-------~ 185 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-------R 185 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-------H
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-------H
Confidence 367788899999999999999999999999999999999999999999999999999999999999999954 3
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
......+..+...++ .++|+..+++++. .+|+++.+++.+|.++...|++
T Consensus 186 ~~~~~~~~~l~~~~~----~~~a~~~l~~al~--------------------------~~P~~~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 186 YQGLVAQIELLXQAA----DTPEIQQLQQQVA--------------------------ENPEDAALATQLALQLHQVGRN 235 (287)
T ss_dssp HHHHHHHHHHHHHHT----SCHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhcc----cCccHHHHHHHHh--------------------------cCCccHHHHHHHHHHHHHcccH
Confidence 344455555666666 8888888888888 8999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHh
Q 009799 406 PEAIQHYTESLRRNPKD--PRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (525)
++|+..|+++++.+|++ ..++..++.++...|+.++|...|++++.
T Consensus 236 ~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 EEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999998 88999999999999999999999999875
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.76 E-value=4.2e-18 Score=153.76 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHH
Q 009799 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLK 366 (525)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 366 (525)
+...|.+|...|++++|+..|.+++.+.+.... ....+.++..+|.++...++ +++|+.+|++++...+.
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~----~~~A~~~~~~Al~l~~~----- 108 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQR----MPEAVQYIEKASVMYVE----- 108 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTC----GGGGHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHH-----
Confidence 344578899999999999999999998876532 33447899999999999999 99999999999984321
Q ss_pred HhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCch
Q 009799 367 KLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMP 440 (525)
Q Consensus 367 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~ 440 (525)
.|+ .+....++..+|.+|.. |++++|+.+|++++.+.|.. ..++.++|.++..+|+++
T Consensus 109 -~g~--------------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 109 -NGT--------------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp -TTC--------------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -cCC--------------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 111 11235678899999999 99999999999999987653 578999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH
Q 009799 441 EGLKDADKCIELDPTF------SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 441 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 491 (525)
+|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.+|++++ ++|+..
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 9999999999986543 3478889999999999999999999999 999764
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.76 E-value=2.5e-17 Score=162.41 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=123.7
Q ss_pred cccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcc
Q 009799 263 KKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCS 342 (525)
Q Consensus 263 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (525)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++ ..++..+|.++...++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~-- 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-------PEAVARLGRVRWTQQR-- 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-------HHHHHHHHHHHHHTTC--
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCC--
Confidence 4788889999999999999999999999999999999999999999999988887 5667777777777777
Q ss_pred cchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC
Q 009799 343 KDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD 422 (525)
Q Consensus 343 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 422 (525)
+++|+..|+++++ .+|+++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 73 --~~~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 73 --HAEAAVLLQQASD--------------------------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp --HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred --HHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8888888888888 778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHc---CCchHHHHHHHHHHhcCCCCHHHHHHHH
Q 009799 423 PRTYSNRAACYTKL---GAMPEGLKDADKCIELDPTFSKGYTRKG 464 (525)
Q Consensus 423 ~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la 464 (525)
+.++..+|.++..+ |++++|...++++++.+|.+...+..++
T Consensus 125 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 88888888888888 8888888888888888888777766655
No 114
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.7e-17 Score=128.24 Aligned_cols=119 Identities=39% Similarity=0.643 Sum_probs=114.0
Q ss_pred CCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009799 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGA 465 (525)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 465 (525)
|..+..+..+|..++..|++++|+..|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHHh
Q 009799 466 IQFFLKEYDKALETYQEGLKHD------PQNQELLDGVRRCVQQI 504 (525)
Q Consensus 466 ~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~ 504 (525)
++..+|++++|+.+|+++++++ |+++.++..+..+...+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 99999999999887664
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.75 E-value=1.5e-17 Score=163.97 Aligned_cols=165 Identities=13% Similarity=0.033 Sum_probs=136.3
Q ss_pred hcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHH
Q 009799 297 MGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKK 376 (525)
Q Consensus 297 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 376 (525)
.|++++|+..++++++.+|++ ..++..+|.++...++ +++|+..|+++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~----~~~A~~~~~~al~------------------- 51 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGD----TTAGEMAVQRGLA------------------- 51 (568)
T ss_dssp -------------------CC-------HHHHHHHHHHHHHHTC----HHHHHHHHHHHHT-------------------
T ss_pred CccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHH-------------------
Confidence 478999999999999999988 6777888888888888 9999999999999
Q ss_pred HHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC
Q 009799 377 ELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF 456 (525)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (525)
.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|++
T Consensus 52 -------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 52 -------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp -------TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh---cCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 009799 457 SKGYTRKGAIQFFL---KEYDKALETYQEGLKHDPQNQELLDGVR 498 (525)
Q Consensus 457 ~~~~~~la~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 498 (525)
+.++..+|.++..+ |++++|...|+++++.+|++...+..++
T Consensus 125 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999999999 9999999999999999998765554433
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.75 E-value=6.2e-18 Score=133.48 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
+++++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNE 104 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~ 104 (525)
.+|++++|+..|++++++.|+.+
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999876
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.5e-17 Score=127.22 Aligned_cols=115 Identities=29% Similarity=0.510 Sum_probs=110.1
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++.++.+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccC------CCcHHHHhhHHhHHHH
Q 009799 82 GLQDYIEAVNSYKKGLDID------PNNEALKSGLADAKAA 116 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 116 (525)
.+|++++|+..|+++++++ |++..++..+..+...
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999 9999988888776543
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.74 E-value=4.5e-18 Score=151.08 Aligned_cols=104 Identities=27% Similarity=0.410 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++.++.+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEA 105 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~ 105 (525)
.+|++++|+..|+++++++|++..
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~ 107 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRL 107 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhCccchh
Confidence 999999999999999999987643
No 119
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.74 E-value=3.9e-18 Score=132.09 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=109.1
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHhccCCc-------hh-----HHHHHHHHHHhhcccHHHHHHHHHHhhcc---
Q 009799 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD-------NH-----VLYSNRSAAHASLHNYADALADAKKTVEL--- 65 (525)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 65 (525)
+|+.++.+|..++..|+|++|+..|+++++.+|+ +. .+|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3678999999999999999999999999999999 43 39999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHh
Q 009799 66 ----KPDWSKGY----SRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (525)
Q Consensus 66 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (525)
+|++..+| +++|.++..+|++++|+.+|+++++++|++......+..+.....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999888777777665553
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.73 E-value=1.9e-17 Score=142.21 Aligned_cols=232 Identities=10% Similarity=0.024 Sum_probs=171.8
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHH-------HHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhh
Q 009799 37 VLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRL-------GAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSG 109 (525)
Q Consensus 37 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 109 (525)
.-++..|.-+ ..+++..|...|.+++.++|+..++|..+ +.++...++..+++..+++.+.+.|....+++.
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 3445556665 58999999999999999999999999999 899999999999999999999999987665544
Q ss_pred HHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHH
Q 009799 110 LADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGV 189 (525)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (525)
+.-+|. +.
T Consensus 87 ~~g~y~---~~--------------------------------------------------------------------- 94 (282)
T 4f3v_A 87 IGGLYG---DI--------------------------------------------------------------------- 94 (282)
T ss_dssp CCTTTC---CC---------------------------------------------------------------------
T ss_pred cCCccc---cc---------------------------------------------------------------------
Confidence 111100 00
Q ss_pred HHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHH
Q 009799 190 LLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKA 269 (525)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 269 (525)
..|- .....+...++..+...|+|++|
T Consensus 95 -----------------------~~~v------------------------------~~r~dl~LayA~~L~~~g~y~eA 121 (282)
T 4f3v_A 95 -----------------------TYPV------------------------------TSPLAITMGFAACEAAQGNYADA 121 (282)
T ss_dssp -----------------------EEEC------------------------------SSHHHHHHHHHHHHHHHTCHHHH
T ss_pred -----------------------cccc------------------------------CCHhHHHHHHHHHHHHCCCHHHH
Confidence 0000 02455667778999999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHH
Q 009799 270 IEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAI 349 (525)
Q Consensus 270 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 349 (525)
...|..++...|++. +.+.+|.++...+++++|+..|+.+....+.. .-..+++.+|.++..+|+ +++|+
T Consensus 122 ~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~-----~~~~a~~~LG~al~~LG~----~~eAl 191 (282)
T 4f3v_A 122 MEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF-----LAGAAGVAHGVAAANLAL----FTEAE 191 (282)
T ss_dssp HHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH-----HHHHHHHHHHHHHHHTTC----HHHHH
T ss_pred HHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc-----cHHHHHHHHHHHHHHCCC----HHHHH
Confidence 999999999999888 99999999999999999999998765532110 113467777777777777 77777
Q ss_pred HHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCC-cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHH
Q 009799 350 ETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK-IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSN 428 (525)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 428 (525)
..|++++... ..|. .+.+++.+|.++..+|+.++|...|++++..+|+ +.++..
T Consensus 192 ~~l~~a~~g~------------------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a 246 (282)
T 4f3v_A 192 RRLTEANDSP------------------------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA 246 (282)
T ss_dssp HHHHHHHTST------------------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHhcCC------------------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence 7777776411 1144 5567777777777777777777777777777776 655544
Q ss_pred H
Q 009799 429 R 429 (525)
Q Consensus 429 l 429 (525)
|
T Consensus 247 L 247 (282)
T 4f3v_A 247 L 247 (282)
T ss_dssp H
T ss_pred H
Confidence 4
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.73 E-value=3.4e-19 Score=162.55 Aligned_cols=203 Identities=15% Similarity=0.169 Sum_probs=163.4
Q ss_pred HHhcccHHHHHHHHHH----HhhcCCCCHHHHHHHHHHHH------------HhcCHHHHHHHHHHHHHccccChhhHHH
Q 009799 260 AYKKKEFEKAIEHYSS----ALELDDEDISYLTNRAAVYL------------EMGKYEECIKDCDKAVERGRELRSDFKM 323 (525)
Q Consensus 260 ~~~~~~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 323 (525)
+...+.+++|+..+.. ++.+.|.. ++..+|.... .++++++|+..+++++...|..
T Consensus 75 ~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~------ 146 (336)
T 1p5q_A 75 LDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ------ 146 (336)
T ss_dssp GTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH------
T ss_pred cccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH------
Confidence 3345688999999999 88888886 4444444332 4567778888888877777665
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (525)
+.++..+|.++...++ +++|+..|++++...|...... . .......|....++.++|.++...|
T Consensus 147 -a~~~~~~g~~~~~~g~----~~~A~~~y~~Al~~~p~~~~~~--~---------~~~~~~~~~~~~~~~nla~~~~~~g 210 (336)
T 1p5q_A 147 -STIVKERGTVYFKEGK----YKQALLQYKKIVSWLEYESSFS--N---------EEAQKAQALRLASHLNLAMCHLKLQ 210 (336)
T ss_dssp -HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHTTTCCCCC--S---------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHhhccccCC--h---------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7788888999998888 9999999999999554421100 0 0001122233689999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH-HHHHHH
Q 009799 404 KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKA-LETYQE 482 (525)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~ 482 (525)
++++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..+|.++..+|++++| ...|++
T Consensus 211 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 557777
Q ss_pred Hhcc
Q 009799 483 GLKH 486 (525)
Q Consensus 483 a~~~ 486 (525)
++..
T Consensus 291 ~~~~ 294 (336)
T 1p5q_A 291 MFER 294 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.72 E-value=1.2e-16 Score=122.89 Aligned_cols=119 Identities=47% Similarity=0.822 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHH
Q 009799 246 RKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIA 325 (525)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 325 (525)
.++.+.++..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++...+..++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999988888889
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKL 368 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (525)
.++.++|.++..+++ +++|+..|++++...|+++....+
T Consensus 84 ~~~~~lg~~~~~~~~----~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 84 KAMSRAGNAFQKQND----LSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHTTC----HHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCcCHHHHHHH
Confidence 999999999999999 999999999999977776654443
No 123
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.72 E-value=9.8e-17 Score=130.25 Aligned_cols=127 Identities=29% Similarity=0.533 Sum_probs=116.6
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (525)
..+..+..++.+|.+++..|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+.+|++++.++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhccCCCCHH--HHHHHHHHHHHhhhhccc
Q 009799 464 GAIQFFLKEYDKALETYQEGLKHDPQNQE--LLDGVRRCVQQINKAGRG 510 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~--~~~~l~~~~~~~~~~~~a 510 (525)
|.++..+|++++|+.+|+++++++|++.. ....+..+...+++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 134 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRG 134 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999987 555666667776665443
No 124
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.71 E-value=1.8e-13 Score=134.37 Aligned_cols=440 Identities=10% Similarity=-0.030 Sum_probs=282.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhccc---HHHHHHHHHHhhccCC--CCHHHHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHN---YADALADAKKTVELKP--DWSKGYSRLG 77 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~~~~la 77 (525)
+.|..........++++.|...|++++...|.....|...+......|+ ++.+...|++++...| .+++.|....
T Consensus 67 ~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl 146 (679)
T 4e6h_A 67 FLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYI 146 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4567777778888999999999999999999999999999999999999 9999999999999994 5778888877
Q ss_pred HHHhhhhhH--------HHHHHHHHHhhc---c-CCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccc---cccCchhh
Q 009799 78 AAHLGLQDY--------IEAVNSYKKGLD---I-DPNNEALKSGLADAKAAASASFRSRSPPADNPFGS---AFAGPEMW 142 (525)
Q Consensus 78 ~~~~~~g~~--------~~A~~~~~~al~---~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 142 (525)
......++. +.....|++|+. . +|....+|............. ..... .-..-..+
T Consensus 147 ~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~---------~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 147 TYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV---------NKFEEQQRVQYIRKLY 217 (679)
T ss_dssp HHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC---------SHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc---------CcHHHHhHHHHHHHHH
Confidence 766555432 344578888875 3 676777777666554321100 00000 00000000
Q ss_pred hhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhh--HHHHHHHHHHHHhhhccCCCCCCcccc-----ccccCCCCC
Q 009799 143 AKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLK--DQRVMQALGVLLNVKFKGPTGGDDVEM-----QDEDAPKGP 215 (525)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 215 (525)
......|.....-.=..+..+.+.+ ++......+. ......+...+.........-...+.. .....+...
T Consensus 218 ~raL~iP~~~~~~~w~~Y~~fe~~~--~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~ 295 (679)
T 4e6h_A 218 KTLLCQPMDCLESMWQRYTQWEQDV--NQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPN 295 (679)
T ss_dssp HHHTTSCCSSHHHHHHHHHHHHHHH--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTT
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhc--CcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCc
Confidence 1111111100000001111222221 1111111110 011111111111111000000000000 000000000
Q ss_pred CC--c--hhh------ccCCCCCCCCCC-----hhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHhhc
Q 009799 216 ET--S--KEE------TRKPESEPEPEP-----MELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAI-EHYSSALEL 279 (525)
Q Consensus 216 ~~--~--~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~l~~ 279 (525)
.. . ..+ .+.. ...... .........+...|.....|+..+..+...|+.++|. ..|++++..
T Consensus 296 ~~~~~ql~lW~~yi~fEk~~--~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~ 373 (679)
T 4e6h_A 296 EYDVQQLLIWLEWIRWESDN--KLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHTC--TTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhC--CccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 00 0 000 0000 000000 0123456677888889999999999999999999997 999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcc-----------ccChh----hHHHHHHHHHHhhhhHHHhhhcccc
Q 009799 280 DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG-----------RELRS----DFKMIARALTRKGTALVKMAKCSKD 344 (525)
Q Consensus 280 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (525)
.|.+...|..++.+....|+++.|..+|++++... |.+.. .......+|..........+.
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~---- 449 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG---- 449 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC----
Confidence 99999999999999999999999999999999853 22100 011124566666666666777
Q ss_pred hHHHHHHHHHHHhc-CCC-hhHHH-------Hh-chHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHH
Q 009799 345 YEPAIETFQKALTE-HRN-PDTLK-------KL-NEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTE 414 (525)
Q Consensus 345 ~~~A~~~~~~~~~~-~~~-~~~~~-------~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 414 (525)
.+.|...|.++++. .+. ..++. .. ++.+.|.++|+.+++..|+++..+...+......|+.+.|..+|++
T Consensus 450 l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999987 322 22221 22 3489999999999999999999999999999999999999999999
Q ss_pred HHhcCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHH
Q 009799 415 SLRRNPK---DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKG 459 (525)
Q Consensus 415 al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (525)
++...|+ ...+|......-...|+.+.+....+++.+..|+++..
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9999883 56788888888889999999999999999999987543
No 125
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.70 E-value=1.3e-16 Score=122.79 Aligned_cols=112 Identities=23% Similarity=0.368 Sum_probs=101.2
Q ss_pred CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH-------HH
Q 009799 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS-------KG 459 (525)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~ 459 (525)
+.+.++..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999987653 58
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009799 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRR 499 (525)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 499 (525)
+..+|.++..+|++++|+++|++++..+|+ ++....+..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 899999999999999999999999999986 555554443
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.70 E-value=1.5e-17 Score=151.75 Aligned_cols=138 Identities=25% Similarity=0.387 Sum_probs=128.0
Q ss_pred HHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCC
Q 009799 374 AKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---------------PRTYSNRAACYTKLGA 438 (525)
Q Consensus 374 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~ 438 (525)
|+..+..++...|..+.++..+|.+++..|++++|+..|++++.+.|.+ ..++.++|.++..+|+
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 211 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333344444788899999999999999999999999999999999998 6999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccC
Q 009799 439 MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (525)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (525)
+++|+.+|+++++++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++.
T Consensus 212 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887764
No 127
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.70 E-value=3.7e-17 Score=126.63 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=109.5
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCchHHHHHHHHHHhc---
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK-------DPR-----TYSNRAACYTKLGAMPEGLKDADKCIEL--- 452 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~--- 452 (525)
....+...|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3567789999999999999999999999999998 443 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 453 ----DPTFSKGY----TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 453 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++..+...+..+...+..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999998888888777666543
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.70 E-value=1.4e-16 Score=126.29 Aligned_cols=115 Identities=12% Similarity=0.078 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+.++.+|..++..|+|++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (525)
+|++++|+..|+++++++|+++........+....
T Consensus 102 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 136 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136 (148)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence 99999999999999999999887655555544444
No 129
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.70 E-value=6.4e-17 Score=135.96 Aligned_cols=128 Identities=25% Similarity=0.407 Sum_probs=120.6
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCchHHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP----------------RTYSNRAACYTKLGAMPEGLKDAD 447 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~~~~~~A~~~~~ 447 (525)
..+..+..+..+|..++..|++++|+..|++++...|.++ .++.++|.++..+|++++|+.+++
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4556678899999999999999999999999999999887 899999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccC
Q 009799 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (525)
Q Consensus 448 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (525)
+++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++..++.++..+++..++.
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887776
No 130
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=7.8e-16 Score=120.43 Aligned_cols=135 Identities=34% Similarity=0.573 Sum_probs=124.3
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.++..+|.++...++ +++|+..+++++. ..|.++..+..+|.++...|++
T Consensus 2 ~~~~~l~~~~~~~~~----~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~ 51 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD----YDEAIEYYQKALE--------------------------LDPRSAEAWYNLGNAYYKQGDY 51 (136)
T ss_dssp HHHHHHHHHHHHHTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHcCc----HHHHHHHHHHHHH--------------------------cCCcchhHHHHHHHHHHHhcCH
Confidence 356667777777777 8888888888887 7788899999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|..+|++++.
T Consensus 52 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 52 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009799 486 HDPQN 490 (525)
Q Consensus 486 ~~p~~ 490 (525)
.+|++
T Consensus 132 ~~~~~ 136 (136)
T 2fo7_A 132 LDPRS 136 (136)
T ss_dssp HSTTC
T ss_pred cCCCC
Confidence 99864
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.1e-16 Score=155.23 Aligned_cols=179 Identities=11% Similarity=0.044 Sum_probs=103.9
Q ss_pred hcc-cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHccccChhhHHHHHHHHHH
Q 009799 262 KKK-EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGK----------YEECIKDCDKAVERGRELRSDFKMIARALTR 330 (525)
Q Consensus 262 ~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 330 (525)
..| ..++|+..+.+++..+|++..+|+.++.++...|+ +++++..+++++..+|++ ..+|..
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-------y~aW~h 112 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-------YGTWHH 112 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHH
Confidence 344 44788999999999999999999999999999887 555555555555555555 344444
Q ss_pred hhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC-ChhHHH
Q 009799 331 KGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ-KYPEAI 409 (525)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~ 409 (525)
++.++..++. .++++++..++++++ .+|.+..+|...+.++...| .+++++
T Consensus 113 R~w~l~~l~~--~~~~~el~~~~k~l~--------------------------~d~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 113 RCWLLSRLPE--PNWARELELCARFLE--------------------------ADERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp HHHHHHTCSS--CCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHccc--ccHHHHHHHHHHHHh--------------------------hccccccHHHHHHHHHHHcCCChHHHH
Confidence 4444444431 003444444444444 45555555555555555555 455555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHc--------------CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q 009799 410 QHYTESLRRNPKDPRTYSNRAACYTKL--------------GAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDK 475 (525)
Q Consensus 410 ~~~~~al~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 475 (525)
+++.++++.+|.+..+|..++.++..+ +.+++|++++.+++..+|++..+|+.++.++...+++++
T Consensus 165 ~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 555555555555555555555555443 233455555555555555555555555555554444333
No 132
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.69 E-value=2.9e-16 Score=127.12 Aligned_cols=126 Identities=24% Similarity=0.391 Sum_probs=117.1
Q ss_pred CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 009799 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRR------------------NPKDPRTYSNRAACYTKLGAMPEGLKDADK 448 (525)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (525)
..+..+...|..++..|+|++|+..|++++.. +|.++.+|.++|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34678889999999999999999999999998 666778999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHhhhhcccCC
Q 009799 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ-ELLDGVRRCVQQINKAGRGEL 512 (525)
Q Consensus 449 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~a~~ 512 (525)
++.++|+++.+++.+|.++..+|++++|+.+|++++.++|+++ .+...+..+...+++..+...
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k 153 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSR 153 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 788899999998887766653
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.69 E-value=2.5e-16 Score=129.70 Aligned_cols=131 Identities=16% Similarity=0.235 Sum_probs=116.1
Q ss_pred hchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCc--hHHHH
Q 009799 368 LNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAAC-YTKLGAM--PEGLK 444 (525)
Q Consensus 368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~--~~A~~ 444 (525)
.|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44555555555555559999999999999999999999999999999999999999999999999 8899999 99999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 009799 445 DADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVR 498 (525)
Q Consensus 445 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 498 (525)
++++++..+|+++.+++.+|.++...|++++|+.+|+++++++|+++.....+.
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999876554433
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.69 E-value=1.8e-16 Score=125.01 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
+.++.+|..++..|+|++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (525)
+|++++|+..|+++++++|+++........+....
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999887766655555444
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.69 E-value=7.3e-17 Score=143.24 Aligned_cols=196 Identities=19% Similarity=0.203 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (525)
.+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|++ ..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~ 75 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-------VKAH 75 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-------HHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------HHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999988 5677
Q ss_pred HHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHH
Q 009799 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEA 408 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 408 (525)
+.+|.++...|+ +++|+..|++++...| +++..+........ ...++
T Consensus 76 ~~lg~~~~~~g~----~~~A~~~~~~al~l~p--------------------------~~~~~~~~~~~~~~---~~~~~ 122 (281)
T 2c2l_A 76 FFLGQCQLEMES----YDEAIANLQRAYSLAK--------------------------EQRLNFGDDIPSAL---RIAKK 122 (281)
T ss_dssp HHHHHHHHHTTC----HHHHHHHHHHHHHHHH--------------------------HTTCCCCSHHHHHH---HHHHH
T ss_pred HHHHHHHHHcCC----HHHHHHHHHHHHHhCc--------------------------cchhhHHHHHHHHH---HHHHH
Confidence 788888888888 9999999999998433 22111110111111 12222
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHhcc
Q 009799 409 IQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFL-KEYDKALETYQEGLKH 486 (525)
Q Consensus 409 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 486 (525)
...........|.++.+...++.+. .|++++|++.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 123 KRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3333334455677777777776654 68888999999999999998888878887777765 7788899999888764
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.69 E-value=2.1e-16 Score=120.33 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccCCCcHH
Q 009799 83 LQDYIEAVNSYKKGLDIDPNNEA 105 (525)
Q Consensus 83 ~g~~~~A~~~~~~al~~~p~~~~ 105 (525)
.|++++|+..|+++++.+|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998753
No 137
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.69 E-value=1.7e-16 Score=128.47 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhcc------------------CCchhHHHHHHHHHHhhcccHHHHHHHHHHhh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISL------------------SPDNHVLYSNRSAAHASLHNYADALADAKKTV 63 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 63 (525)
++.+..+|..++..|+|++|+..|++++.. +|.++.++.++|.|+..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 568899999999999999999999999999 77778999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcH-HHHhhHHhHHHHHhhc
Q 009799 64 ELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE-ALKSGLADAKAAASAS 120 (525)
Q Consensus 64 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~ 120 (525)
.++|+++.+++.+|.++..+|++++|+..|+++++++|++. .+...+..+.......
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 6777888877776654
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.69 E-value=5.9e-16 Score=120.79 Aligned_cols=123 Identities=48% Similarity=0.850 Sum_probs=118.4
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (525)
..|..+..++.+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+.+++++++.+|+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
|.++...|++++|+.+|++++.++|++..++..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999987763
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.68 E-value=3.6e-16 Score=126.89 Aligned_cols=119 Identities=33% Similarity=0.540 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++.++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHH--hhHHhHHHHHhhc
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALK--SGLADAKAAASAS 120 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~~~~ 120 (525)
.+|++++|+.+|+++++++|++...+ ..+..+....++.
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998844 4455555555544
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.68 E-value=9.3e-16 Score=119.22 Aligned_cols=124 Identities=28% Similarity=0.504 Sum_probs=119.5
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (525)
.+|..+..+..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.++++++..+|+++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh
Q 009799 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKA 507 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 507 (525)
|.++...|++++|+.+|+++++++|+++.++..++.++..+|+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998864
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.68 E-value=6.1e-16 Score=121.41 Aligned_cols=124 Identities=28% Similarity=0.451 Sum_probs=116.3
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (525)
.+|..+..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHhhhh
Q 009799 464 GAIQFFLKEYDKALETYQEGLKHDPQ-----NQELLDGVRRCVQQINKA 507 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~~~~~~ 507 (525)
|.++...|++++|+.+|++++.++|+ +..+...+..+.......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 788888888887766543
No 142
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=7.4e-15 Score=124.41 Aligned_cols=189 Identities=14% Similarity=0.042 Sum_probs=154.5
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc----CHHHHHHHHHH
Q 009799 234 MELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMG----KYEECIKDCDK 309 (525)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~ 309 (525)
+++..+.+.... ..+.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 344445555443 57889999999999999999999999999875 689999999999998 7 99999999999
Q ss_pred HHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCC--C
Q 009799 310 AVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP--K 387 (525)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~ 387 (525)
+.+. .+ +.+++.+|.++..-....+++++|+.+|+++.. ..| .
T Consensus 79 A~~~--g~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--------------------------~~~~~~ 123 (212)
T 3rjv_A 79 AVEA--GS-------KSGEIVLARVLVNRQAGATDVAHAITLLQDAAR--------------------------DSESDA 123 (212)
T ss_dssp HHHT--TC-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS--------------------------STTSHH
T ss_pred HHHC--CC-------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH--------------------------cCCCcc
Confidence 9764 34 577788888877622112339999999999988 555 3
Q ss_pred cHHHHHHhhhHHHh----cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-----CchHHHHHHHHHHhcCCCCH
Q 009799 388 IADEEREKGNEFFK----QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL-G-----AMPEGLKDADKCIELDPTFS 457 (525)
Q Consensus 388 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~al~~~p~~~ 457 (525)
.+.+++.+|.+|.. .+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+.+|+++.+.. ++
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~ 200 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FD 200 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CH
Confidence 58999999999999 88999999999999998 67888999999999875 3 8999999999999874 45
Q ss_pred HHHHHHHH
Q 009799 458 KGYTRKGA 465 (525)
Q Consensus 458 ~~~~~la~ 465 (525)
.+...++.
T Consensus 201 ~A~~~l~~ 208 (212)
T 3rjv_A 201 TGCEEFDR 208 (212)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.67 E-value=2.4e-15 Score=134.82 Aligned_cols=180 Identities=13% Similarity=0.081 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh
Q 009799 283 DISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP 362 (525)
Q Consensus 283 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 362 (525)
....+...+..+...|++++|+..+.++++..+..... ......+..+|.++...++ +++|+..+++++...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-QQFLQWQYYVAAYVLKKVD----YEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHHHHHHHHTSSC----HHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH-HHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhcC
Confidence 33455566777777888888888888887776653322 2234555667777777777 999999999888754331
Q ss_pred hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHH
Q 009799 363 DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL---RRNPKDP----RTYSNRAACYTK 435 (525)
Q Consensus 363 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~~ 435 (525)
. .......++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|..
T Consensus 149 ~--------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 149 I--------------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp S--------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred C--------------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 1 111235688999999999999999999999999 4556543 689999999999
Q ss_pred cCCchHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHH-HHHHHHHhccC
Q 009799 436 LGAMPEGLKDADKCIELDPT------FSKGYTRKGAIQFFLKEYDKA-LETYQEGLKHD 487 (525)
Q Consensus 436 ~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~ 487 (525)
+|++++|+.++++++.+.++ ...+++.+|.+|..+|++++| ..+|++++.+.
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999987532 267899999999999999999 88899998763
No 144
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.67 E-value=2.3e-14 Score=124.78 Aligned_cols=187 Identities=10% Similarity=-0.007 Sum_probs=146.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccc--cChhhHHHHHHHHHHhhhhHHHhhhcccchH
Q 009799 269 AIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGR--ELRSDFKMIARALTRKGTALVKMAKCSKDYE 346 (525)
Q Consensus 269 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (525)
|+..+++.+...+.+...+..+|.++...|++++|+.++.+.+..+| .+ ..++.....++..+++ .+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~-------lea~~l~vqi~L~~~r----~d 153 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT-------TELLLLAIEVALLNNN----VS 153 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH-------HHHHHHHHHHHHHTTC----HH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc-------HHHHHHHHHHHHHCCC----HH
Confidence 67788887776656666677888888888888888888888887776 33 4566666666777777 88
Q ss_pred HHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCC------CcHHHHHHhhhHHHhcC--ChhHHHHHHHHHHhc
Q 009799 347 PAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP------KIADEEREKGNEFFKQQ--KYPEAIQHYTESLRR 418 (525)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~ 418 (525)
.|.+.++++.+ .+| +.......-|++.+..| ++++|...|+++...
T Consensus 154 ~A~k~l~~~~~--------------------------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 154 TASTIFDNYTN--------------------------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HHHHHHHHHHH--------------------------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--------------------------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 88888888776 555 22333444455566666 899999999999888
Q ss_pred CCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 419 NPK--DPRTYSNRAACYTKLGAMPEGLKDADKCIEL----------DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 419 ~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
.|+ .+..+++ ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.
T Consensus 208 ~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 208 FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 886 3344444 899999999999999988876 58899999999999999998 899999999999
Q ss_pred CCCCHHHHHHH
Q 009799 487 DPQNQELLDGV 497 (525)
Q Consensus 487 ~p~~~~~~~~l 497 (525)
+|+++.+...-
T Consensus 283 ~P~hp~i~d~~ 293 (310)
T 3mv2_B 283 DHEHAFIKHHQ 293 (310)
T ss_dssp TCCCHHHHHHH
T ss_pred CCCChHHHHHH
Confidence 99999776543
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.67 E-value=7.1e-16 Score=117.42 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=93.8
Q ss_pred HHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009799 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF 469 (525)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 469 (525)
..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHhccCCCCHH
Q 009799 470 LKEYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 470 ~g~~~~A~~~~~~a~~~~p~~~~ 492 (525)
.|++++|+..|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998754
No 146
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.66 E-value=3e-14 Score=124.14 Aligned_cols=173 Identities=11% Similarity=0.014 Sum_probs=137.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcccc----ChhhHHHHH
Q 009799 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDD--EDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE----LRSDFKMIA 325 (525)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~ 325 (525)
.+..+|.++...|++++|+.++.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+.+|+ .......++
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence 345789999999999999999999999987 88999999999999999999999999999998883 122222333
Q ss_pred HHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCCh
Q 009799 326 RALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKY 405 (525)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (525)
.+|.. ...| .+++.+|...|+++.. ..|+.......+. ++..+|++
T Consensus 182 ea~v~-----l~~g--~~~~q~A~~~f~El~~--------------------------~~p~~~~~~lLln-~~~~~g~~ 227 (310)
T 3mv2_B 182 ESYIK-----FATN--KETATSNFYYYEELSQ--------------------------TFPTWKTQLGLLN-LHLQQRNI 227 (310)
T ss_dssp HHHHH-----HHHT--CSTTTHHHHHHHHHHT--------------------------TSCSHHHHHHHHH-HHHHHTCH
T ss_pred HHHHH-----HHhC--CccHHHHHHHHHHHHH--------------------------hCCCcccHHHHHH-HHHHcCCH
Confidence 33332 2223 1239999999999877 5554222222222 89999999
Q ss_pred hHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHH
Q 009799 406 PEAIQHYTESLRR----------NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGY 460 (525)
Q Consensus 406 ~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 460 (525)
++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999999987776 48899999999999999997 89999999999999998764
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=118.29 Aligned_cols=117 Identities=38% Similarity=0.617 Sum_probs=112.4
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
+.+++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHh
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAAS 118 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 118 (525)
..|++++|+..|+++++.+|.+..++..++.++...+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998887664
No 148
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.65 E-value=5.4e-15 Score=125.86 Aligned_cols=135 Identities=16% Similarity=0.138 Sum_probs=121.1
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (525)
+..++.+|..+...++ +++|+..|++++. | ++.+++.+|.++...|+
T Consensus 6 ~~~~~~~g~~~~~~~~----~~~A~~~~~~a~~----------------------------~-~~~~~~~lg~~~~~~g~ 52 (213)
T 1hh8_A 6 AISLWNEGVLAADKKD----WKGALDAFSAVQD----------------------------P-HSRICFNIGCMYTILKN 52 (213)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHTSSS----------------------------C-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCC----HHHHHHHHHHHcC----------------------------C-ChHHHHHHHHHHHHcCC
Confidence 3456667777777777 8888888877643 2 57899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHH
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS----------------KGYTRKGAIQF 468 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~ 468 (525)
+++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++..|.+. .+++.+|.++.
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 132 (213)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888766 99999999999
Q ss_pred HhcCHHHHHHHHHHHhccCCCCHH
Q 009799 469 FLKEYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 469 ~~g~~~~A~~~~~~a~~~~p~~~~ 492 (525)
.+|++++|+.+|+++++++|++..
T Consensus 133 ~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 133 KKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HccCHHHHHHHHHHHHHcCccccc
Confidence 999999999999999999998754
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.65 E-value=1.7e-14 Score=129.23 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=150.7
Q ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccC
Q 009799 244 KERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI------SYLTNRAAVYLEMGKYEECIKDCDKAVERGREL 317 (525)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 317 (525)
...+.....+...+..+...|++++|+..+.++++..|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 69 YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 34566777888899999999999999999999999887654 346678889999999999999999999877654
Q ss_pred hhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCC----cHHHHH
Q 009799 318 RSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPK----IADEER 393 (525)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 393 (525)
..... .+.++..+|.+|...++ +++|+.+|++++.... ..|. ...+++
T Consensus 149 ~~~~~-~~~~~~~lg~~y~~~~~----~~~A~~~~~kal~~~~-----------------------~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 149 IDVYQ-NLYIENAIANIYAENGY----LKKGIDLFEQILKQLE-----------------------ALHDNEEFDVKVRY 200 (293)
T ss_dssp SCTTH-HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHH-----------------------HSCCCHHHHHHHHH
T ss_pred CchHH-HHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHH-----------------------hcCccccchHHHHH
Confidence 33222 36789999999999999 9999999999995210 2222 236889
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchHH-HHHHHHHHhc
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNPK------DPRTYSNRAACYTKLGAMPEG-LKDADKCIEL 452 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~ 452 (525)
++|.+|...|++++|+.++++++++.++ .+.+++++|.++..+|++++| ..++++++.+
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543 267899999999999999999 8889999865
No 150
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.65 E-value=1.2e-14 Score=113.50 Aligned_cols=135 Identities=34% Similarity=0.522 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhH
Q 009799 285 SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT 364 (525)
Q Consensus 285 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 364 (525)
.+++.+|.++...|++++|+..+++++...|.+ ..++..+|.++...++ +++|+..+++++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~----~~~A~~~~~~~~~------- 63 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGD----YDEAIEYYQKALE------- 63 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTC----HHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc-------hhHHHHHHHHHHHhcC----HHHHHHHHHHHHH-------
Confidence 467889999999999999999999999998877 4566777777777777 9999999999988
Q ss_pred HHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHH
Q 009799 365 LKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLK 444 (525)
Q Consensus 365 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 444 (525)
..|..+.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|..
T Consensus 64 -------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 64 -------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp -------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -------------------HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence 6788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCC
Q 009799 445 DADKCIELDPTF 456 (525)
Q Consensus 445 ~~~~al~~~p~~ 456 (525)
++++++..+|++
T Consensus 125 ~~~~~~~~~~~~ 136 (136)
T 2fo7_A 125 YYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHSTTC
T ss_pred HHHHHHccCCCC
Confidence 999999998863
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.65 E-value=7.8e-15 Score=111.57 Aligned_cols=115 Identities=36% Similarity=0.646 Sum_probs=110.2
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 467 (525)
.+..++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009799 468 FFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (525)
Q Consensus 468 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 502 (525)
...|++++|..+|+++++.+|+++.++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999998887753
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.64 E-value=8.3e-15 Score=112.70 Aligned_cols=121 Identities=31% Similarity=0.514 Sum_probs=113.5
Q ss_pred CCCc-HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHH
Q 009799 385 DPKI-ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRK 463 (525)
Q Consensus 385 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 463 (525)
+|.. ...+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++..+|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009799 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 505 (525)
|.++...|++++|+.+|+++++.+|+++.++..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999887654
No 153
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.64 E-value=1.2e-16 Score=152.21 Aligned_cols=128 Identities=25% Similarity=0.423 Sum_probs=118.3
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCchHHHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---------------PRTYSNRAACYTKLGAMPEGLKDADK 448 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~ 448 (525)
..|..+..+..+|.+++..|+|++|+..|++++++.|.+ ..+|+++|.++..+|++++|+.+|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 778889999999999999999999999999999999988 68999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccC
Q 009799 449 CIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (525)
Q Consensus 449 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (525)
+++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++.
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876554
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.64 E-value=4.4e-16 Score=130.76 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=84.4
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQF 468 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 468 (525)
..++..+|.++...|++++|+.+++++++.+|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++..++.++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHH-HHHHHHhc
Q 009799 469 FLKEYDKAL-ETYQEGLK 485 (525)
Q Consensus 469 ~~g~~~~A~-~~~~~a~~ 485 (525)
..++..++. ..|.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999888877 45555444
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=4.6e-15 Score=112.87 Aligned_cols=113 Identities=50% Similarity=0.742 Sum_probs=108.6
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++.++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (525)
..|++++|+..|+++++.+|+++.++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999988887664
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.63 E-value=3.1e-15 Score=115.98 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=106.8
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh---HHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC---HHHHH
Q 009799 1 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH---VLYSNRSAAHASLHNYADALADAKKTVELKPDW---SKGYS 74 (525)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 74 (525)
|++.++.+|..++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++
T Consensus 1 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 1 MARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 467899999999999999999999999999999988 799999999999999999999999999999999 88999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHH
Q 009799 75 RLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAA 116 (525)
Q Consensus 75 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (525)
.+|.++..+|++++|+..|+++++..|+++.+......+...
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999998877666655443
No 157
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=1.5e-14 Score=117.61 Aligned_cols=133 Identities=19% Similarity=0.270 Sum_probs=108.8
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (525)
.+..+..+|.++...++ +++|+..|.+++. ..|.++.++..+|.++...|
T Consensus 12 ~~~~~~~~a~~~~~~~~----~~~A~~~~~~al~--------------------------~~~~~~~~~~~~a~~~~~~~ 61 (166)
T 1a17_A 12 RAEELKTQANDYFKAKD----YENAIKFYSQAIE--------------------------LNPSNAIYYGNRSLAYLRTE 61 (166)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccC----HHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHcC
Confidence 36777788888888777 8888888888887 67778888888888888888
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHhcCHHHHHHHHH
Q 009799 404 KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGA--IQFFLKEYDKALETYQ 481 (525)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~ 481 (525)
++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++..+|++..++..++. .+...|++++|+..+.
T Consensus 62 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 88888888888888888888888888888888888888888888888888888877744444 4777888888888888
Q ss_pred HHhcc
Q 009799 482 EGLKH 486 (525)
Q Consensus 482 ~a~~~ 486 (525)
++..+
T Consensus 142 ~~~~~ 146 (166)
T 1a17_A 142 HKRSV 146 (166)
T ss_dssp HHHHH
T ss_pred chHHH
Confidence 76543
No 158
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=8.3e-15 Score=142.11 Aligned_cols=183 Identities=13% Similarity=0.072 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHH
Q 009799 300 YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELE 379 (525)
Q Consensus 300 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 379 (525)
.++|+..+++++..+|++ ..+|..++.++..+++..+ .+ .....+++++..++
T Consensus 45 ~eeal~~~~~~l~~nP~~-------~taW~~R~~~l~~l~~~~~-~~-------------------~~~~~~~~eL~~~~ 97 (567)
T 1dce_A 45 DESVLELTSQILGANPDF-------ATLWNCRREVLQHLETEKS-PE-------------------ESAALVKAELGFLE 97 (567)
T ss_dssp SHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHTTSC-HH-------------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchh-------HHHHHHHHHHHHhcccccc-hh-------------------hhhhhHHHHHHHHH
Confidence 468899999999999999 5666666666555544100 00 00112334444455
Q ss_pred HHhhcCCCcHHHHHHhhhHHHhcC--ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CchHHHHHHHHHHhcCCCC
Q 009799 380 QQEIFDPKIADEEREKGNEFFKQQ--KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG-AMPEGLKDADKCIELDPTF 456 (525)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~ 456 (525)
+++..+|++..+|...+.++...+ +++++++.+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+
T Consensus 98 ~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n 177 (567)
T 1dce_A 98 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 177 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC
Confidence 555599999999999999999999 6799999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHHHh--------------cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009799 457 SKGYTRKGAIQFFL--------------KEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (525)
Q Consensus 457 ~~~~~~la~~~~~~--------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (525)
..+|..++.++..+ +.+++|++++.+++.++|++..+|..++.++...++..+
T Consensus 178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99999999999885 678999999999999999999999999999988876433
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.63 E-value=5.1e-15 Score=132.66 Aligned_cols=175 Identities=14% Similarity=0.111 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHH
Q 009799 287 LTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLK 366 (525)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 366 (525)
+...+..+...|++++|+..+++++...+..+.. ......+..+|.++...++ +++|+..|++++...+...
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~----~~~Ai~~~~~al~~~~~~~--- 149 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-QQFLQWQYYVAAYVLKKVD----YEYCILELKKLLNQQLTGI--- 149 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH-HHHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHHTCCCCS---
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH-HHHHHHHHHHHHHHHcccC----HHHHHHHHHHHHHHhcccc---
Confidence 3345677888899999999999998876655433 2334555667888777777 9999999999988433211
Q ss_pred HhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCc
Q 009799 367 KLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN-------PKDPRTYSNRAACYTKLGAM 439 (525)
Q Consensus 367 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~ 439 (525)
.......++..+|.+|...|++++|+.+|+++++.. +..+.+++++|.+|..+|++
T Consensus 150 -----------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 150 -----------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 111124578999999999999999999999999531 22346889999999999999
Q ss_pred hHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhc-CHHHHHHHHHHHhcc
Q 009799 440 PEGLKDADKCIELDPTF------SKGYTRKGAIQFFLK-EYDKALETYQEGLKH 486 (525)
Q Consensus 440 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 486 (525)
++|+.++++++++.+.. +.+++.+|.++..+| ++++|+.+|++++.+
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999875433 789999999999999 579999999999875
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.63 E-value=6.3e-15 Score=114.43 Aligned_cols=119 Identities=39% Similarity=0.634 Sum_probs=114.1
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhc
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (525)
..|++++|+..|+++++.+|++..++..++.++...|+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998887653
No 161
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.63 E-value=1.6e-14 Score=129.50 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDIS------YLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
.....+...+..++..|++++|+..+++++...+..+. .+..+|.++...|++++|+..+++++...+.....
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~- 151 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV- 151 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT-
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH-
Confidence 34445556688899999999999999999998877665 33458888888999999999999999976654333
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFK 401 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (525)
...+.++..+|.+|...++ +++|+.+|++++.... ......+....+++++|.+|..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~----~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGY----LKKGIDLFEQILKQLE-------------------ALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp THHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHH-------------------HSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHH-------------------hcccchhHHHHHHHHHHHHHHH
Confidence 2346789999999999999 9999999999986211 1001234456789999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC-chHHHHHHHHHHhc
Q 009799 402 QQKYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGA-MPEGLKDADKCIEL 452 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~-~~~A~~~~~~al~~ 452 (525)
.|++++|+.++++++++.+.. +.+++++|.++..+|+ +++|+.+|++++.+
T Consensus 209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999999999876443 7899999999999995 59999999999876
No 162
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.62 E-value=8.6e-15 Score=119.08 Aligned_cols=129 Identities=28% Similarity=0.508 Sum_probs=118.1
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 467 (525)
.+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++..+|+++.+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH--HHHhhhhcccCCChHH
Q 009799 468 FFLKEYDKALETYQEGLKHDPQNQELLDGVRRC--VQQINKAGRGELSPEE 516 (525)
Q Consensus 468 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~~ 516 (525)
...|++++|+.+|+++++++|++..++..++.+ +...|+..++.....+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999999998666655 6677777776655443
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.62 E-value=3.2e-15 Score=117.25 Aligned_cols=117 Identities=27% Similarity=0.388 Sum_probs=108.9
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
++.++..|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCC-----cHHHHhhHHhHHHHHh
Q 009799 82 GLQDYIEAVNSYKKGLDIDPN-----NEALKSGLADAKAAAS 118 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~ 118 (525)
..|++++|+..|+++++++|+ +..+...+..+.....
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 6667766666655543
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9e-15 Score=116.38 Aligned_cols=119 Identities=27% Similarity=0.332 Sum_probs=113.4
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKD---PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGY 460 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 460 (525)
..|.....++.+|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+.++++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 467889999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009799 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQ 502 (525)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 502 (525)
+.+|.++...|++++|+.+|++++.++|+++.++..+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988887753
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.61 E-value=1e-14 Score=113.21 Aligned_cols=121 Identities=24% Similarity=0.415 Sum_probs=113.1
Q ss_pred CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC-------HHH
Q 009799 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTF-------SKG 459 (525)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 459 (525)
..+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++...|++ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhc
Q 009799 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAG 508 (525)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 508 (525)
++.+|.++...|++++|+.+|+++++..| ++.....++.+...+++..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 6999999999988887643
No 166
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.60 E-value=6.4e-14 Score=119.14 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 327 (525)
.....++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|++ ..+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~ 73 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-------AVA 73 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHH
Confidence 455678899999999999999999999986 33 78999999999999999999999999999999988 677
Q ss_pred HHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhH
Q 009799 328 LTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPE 407 (525)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (525)
+..+|.++...++ +++|+..|++++...|...... .........|..+.+++.+|.++...|++++
T Consensus 74 ~~~lg~~~~~~~~----~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (213)
T 1hh8_A 74 YFQRGMLYYQTEK----YDLAIKDLKEALIQLRGNQLID----------YKILGLQFKLFACEVLYNIAFMYAKKEEWKK 139 (213)
T ss_dssp HHHHHHHHHHTTC----HHHHHHHHHHHHHTTTTCSEEE----------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHccc----HHHHHHHHHHHHHhCCCccHHH----------HHHhccccCccchHHHHHHHHHHHHccCHHH
Confidence 8888888888888 9999999999999655422000 0000011334556888899999999999999
Q ss_pred HHHHHHHHHhcCCCCH
Q 009799 408 AIQHYTESLRRNPKDP 423 (525)
Q Consensus 408 A~~~~~~al~~~~~~~ 423 (525)
|+..|+++++..|++.
T Consensus 140 A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 140 AEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHcCcccc
Confidence 9999999998888764
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.60 E-value=1.6e-14 Score=111.83 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=106.2
Q ss_pred HHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC---HHHHHHH
Q 009799 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP---RTYSNRAACYTKLGAMPEGLKDADKCIELDPTF---SKGYTRK 463 (525)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 463 (525)
..++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3467899999999999999999999999999988 799999999999999999999999999999999 8899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009799 464 GAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 505 (525)
|.++..+|++++|+..|++++..+|+++.+......+....+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988776666554433
No 168
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.59 E-value=4.8e-15 Score=114.51 Aligned_cols=99 Identities=15% Similarity=0.271 Sum_probs=67.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc----------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 009799 402 QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAM----------PEGLKDADKCIELDPTFSKGYTRKGAIQFFLK 471 (525)
Q Consensus 402 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 471 (525)
.+.+++|++.++++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++..+|+++|.+|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34455555555555555555555555555555555543 47777777777777777777777777777664
Q ss_pred -----------CHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 009799 472 -----------EYDKALETYQEGLKHDPQNQELLDGVRRC 500 (525)
Q Consensus 472 -----------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 500 (525)
++++|+.+|++|++++|++...+..+..+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 78888888888888888887766665544
No 169
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.58 E-value=3e-14 Score=109.50 Aligned_cols=116 Identities=33% Similarity=0.526 Sum_probs=110.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHL 81 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (525)
+..++..|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHH
Q 009799 82 GLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAA 117 (525)
Q Consensus 82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 117 (525)
..|++++|+..|++++..+|+++.++..++.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988887654
No 170
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.58 E-value=6.8e-11 Score=113.01 Aligned_cols=364 Identities=9% Similarity=-0.035 Sum_probs=217.1
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhccc-HHHHHHHHHHhhcc---CCCCHHHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHN-YADALADAKKTVEL---KPDWSKGYSRLG 77 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~la 77 (525)
|...+..+...+=.|+++.+..+|++++...| +...|........+.+. .+.....|+.++.. +|.+...|....
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 45677888888888999999999999999988 67888888887777663 35566778888764 788889999988
Q ss_pred HHHh----hhhhHHHHHHHHHHhhccCCCcHH-HHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcc
Q 009799 78 AAHL----GLQDYIEAVNSYKKGLDIDPNNEA-LKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTR 152 (525)
Q Consensus 78 ~~~~----~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
..+. ..|+.+.+...|++++..-+.+.+ .|..........+..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~-------------------------------- 140 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI-------------------------------- 140 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHH--------------------------------
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccc--------------------------------
Confidence 8765 468899999999999995333222 222222111111000
Q ss_pred cccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCC
Q 009799 153 SYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPE 232 (525)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (525)
...+.+.. ..+....+...+....
T Consensus 141 ---------~~~~~~~~---------~~~~y~~ar~~y~~~~-------------------------------------- 164 (493)
T 2uy1_A 141 ---------TGKKIVGD---------TLPIFQSSFQRYQQIQ-------------------------------------- 164 (493)
T ss_dssp ---------HHHHHHHH---------HHHHHHHHHHHHHHHH--------------------------------------
T ss_pred ---------cHHHHHHH---------HhHHHHHHHHHHHHHH--------------------------------------
Confidence 00000000 0000000000000000
Q ss_pred ChhhhHHHHHHHHhHHHHHHHHHHHHHHHhc--c-----cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 009799 233 PMELTEEEKEAKERKEKALKEKEAGNAAYKK--K-----EFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIK 305 (525)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~ 305 (525)
..... .....|......-... + ........|++++...|..+.+|...+..+...|+.+.|..
T Consensus 165 --------~~~~~--~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 165 --------PLIRG--WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp --------HHHHT--CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------HHHhh--ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 00000 0112333322222211 0 14567789999999999999999999999999999999999
Q ss_pred HHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCC--------Ch----------hHHHH
Q 009799 306 DCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHR--------NP----------DTLKK 367 (525)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~----------~~~~~ 367 (525)
.|++++.. |.+...+...+.. ..+... ++. +........ .. .....
T Consensus 235 i~erAi~~-P~~~~l~~~y~~~-~e~~~~----------~~~----l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 235 VVERGIEM-SDGMFLSLYYGLV-MDEEAV----------YGD----LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HHHHHHHH-CCSSHHHHHHHHH-TTCTHH----------HHH----HHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHhh-cchhHH----------HHH----HHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 99999999 8875433211111 000110 111 111100000 00 01123
Q ss_pred hchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC-ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 009799 368 LNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ-KYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDA 446 (525)
Q Consensus 368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 446 (525)
.+..+.|...|.++ ...+....+|...|.+....+ +.+.|..+|+.+++..|+++..|...+......|+.+.|...|
T Consensus 299 ~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45567777777777 333334455655565555544 5777778888777777777777777777777777777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 447 DKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 447 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
+++ +.....|......-...|+.+.+...+++++.
T Consensus 378 er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 378 KRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 776 23456666666666667777777777777764
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-14 Score=113.60 Aligned_cols=113 Identities=27% Similarity=0.426 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGA 78 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (525)
++.++..|..++..|+|++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 4678999999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHH
Q 009799 79 AHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (525)
Q Consensus 79 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (525)
++...|++++|+..|+++++++|++..++..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999888777663
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.58 E-value=1e-14 Score=109.75 Aligned_cols=107 Identities=10% Similarity=0.131 Sum_probs=103.4
Q ss_pred CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC--CHHHHHH
Q 009799 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPT--FSKGYTR 462 (525)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 462 (525)
+|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+.+++++++.+|+ ++.++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHh-cCHHHHHHHHHHHhccCCCCH
Q 009799 463 KGAIQFFL-KEYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 463 la~~~~~~-g~~~~A~~~~~~a~~~~p~~~ 491 (525)
+|.++... |++++|++++++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999999864
No 173
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.58 E-value=1.9e-14 Score=118.35 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=89.9
Q ss_pred HHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhh-HHHh
Q 009799 260 AYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTA-LVKM 338 (525)
Q Consensus 260 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 338 (525)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|++ ..++..+|.+ +...
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-------AELYAALATVLYYQA 92 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhc
Confidence 3457889999999999999999999999999999999999999999999999888876 4455555555 4444
Q ss_pred hhcccch--HHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHH
Q 009799 339 AKCSKDY--EPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL 416 (525)
Q Consensus 339 ~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 416 (525)
++ + ++|+..+++++. .+|.++.++..+|.++...|++++|+..|++++
T Consensus 93 ~~----~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 93 SQ----HMTAQTRAMIDKALA--------------------------LDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp TT----CCCHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC----cchHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44 5 666666666665 556666666666666666666666666666666
Q ss_pred hcCCCCHH
Q 009799 417 RRNPKDPR 424 (525)
Q Consensus 417 ~~~~~~~~ 424 (525)
+.+|+++.
T Consensus 143 ~~~p~~~~ 150 (177)
T 2e2e_A 143 DLNSPRIN 150 (177)
T ss_dssp HTCCTTSC
T ss_pred hhCCCCcc
Confidence 66665543
No 174
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.58 E-value=4.8e-15 Score=114.50 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=93.5
Q ss_pred HhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccH----------HHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Q 009799 13 FSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNY----------ADALADAKKTVELKPDWSKGYSRLGAAHLG 82 (525)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (525)
-+.+.|++|+..|+++++.+|+++.+|+++|.++..++++ ++|+..|+++++++|++..+|+.+|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999876 599999999999999999999999999998
Q ss_pred hh-----------hHHHHHHHHHHhhccCCCcHHHHhhHHhHH
Q 009799 83 LQ-----------DYIEAVNSYKKGLDIDPNNEALKSGLADAK 114 (525)
Q Consensus 83 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 114 (525)
+| ++++|+.+|+++++++|++..++..+..+-
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 85 899999999999999999988777665543
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.56 E-value=7.8e-15 Score=111.21 Aligned_cols=109 Identities=9% Similarity=0.109 Sum_probs=91.2
Q ss_pred hcCChhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q 009799 401 KQQKYPEAIQHYTESLRR---NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKAL 477 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 477 (525)
..|++++|+..|+++++. +|+++.++..+|.++..+|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 368899999999999998 58888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhhhcc
Q 009799 478 ETYQEGLKHDPQNQELLDGVRRCVQQINKAGR 509 (525)
Q Consensus 478 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 509 (525)
..|++++...|+++.+......+....+...+
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887766665555544433
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.56 E-value=3.4e-15 Score=142.07 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=145.5
Q ss_pred cHHHHHHHHHH----HhhcCCCCHHHHHHHHHHH------------HHhcCHHHHHHHHHHHHHccccChhhHHHHHHHH
Q 009799 265 EFEKAIEHYSS----ALELDDEDISYLTNRAAVY------------LEMGKYEECIKDCDKAVERGRELRSDFKMIARAL 328 (525)
Q Consensus 265 ~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~------------~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 328 (525)
.++.|+..+.+ ++.++|.. ++...|... ...+++++|+..++.++...|.. +..+
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~-------a~~~ 271 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ-------AAIV 271 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHH-------HHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHH-------HHHH
Confidence 56666666666 66667653 222222111 13455667777777777666654 7788
Q ss_pred HHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHH
Q 009799 329 TRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEA 408 (525)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 408 (525)
..+|..+...++ +++|+..|++++...|...... .. ......+....++.++|.++...|++++|
T Consensus 272 ~~~G~~~~~~g~----~~~A~~~y~~Al~~~p~~~~~~--~~---------~~~~~~~~~~~~~~nla~~~~~~g~~~~A 336 (457)
T 1kt0_A 272 KEKGTVYFKGGK----YMQAVIQYGKIVSWLEMEYGLS--EK---------ESKASESFLLAAFLNLAMCYLKLREYTKA 336 (457)
T ss_dssp HHHHHHHHHTTC----HHHHHHHHHHHHHHHTTCCSCC--HH---------HHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCC----HHHHHHHHHHHHHHhcccccCC--hH---------HHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999999888 9999999999999554421100 00 00012233378999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH-HHHHHh
Q 009799 409 IQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALE-TYQEGL 484 (525)
Q Consensus 409 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~ 484 (525)
+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..+|++++|.. .|++++
T Consensus 337 ~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 337 VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998874 344443
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.55 E-value=6.2e-15 Score=134.39 Aligned_cols=112 Identities=23% Similarity=0.327 Sum_probs=93.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh-----------------HHHHHHHHHHhhcccHHHHHHHHHHhhc
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH-----------------VLYSNRSAAHASLHNYADALADAKKTVE 64 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 64 (525)
+..++.+|..++..|+|++|+..|++++...|++. .+++++|.++..+|++++|+..|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999877 4999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhH
Q 009799 65 LKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (525)
Q Consensus 65 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (525)
++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877766554
No 178
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.55 E-value=1.1e-13 Score=116.70 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=138.7
Q ss_pred HHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhc------cCCCCHHHHHHHHHHHhhhhh
Q 009799 12 AFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVE------LKPDWSKGYSRLGAAHLGLQD 85 (525)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~ 85 (525)
++..|+|++|...++......+..+.++..+|.++...|++++|+..+++++. ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999966655554446789999999999999999999999999998 445567889999999999999
Q ss_pred HHHHHHHHHHhhccC---CCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHH
Q 009799 86 YIEAVNSYKKGLDID---PNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRN 162 (525)
Q Consensus 86 ~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (525)
+++|+..+++++.+. ++++
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~---------------------------------------------------------- 103 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDP---------------------------------------------------------- 103 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCH----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCccH----------------------------------------------------------
Confidence 999999999998762 2111
Q ss_pred HHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHH
Q 009799 163 MMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKE 242 (525)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (525)
T Consensus 104 -------------------------------------------------------------------------------- 103 (203)
T 3gw4_A 104 -------------------------------------------------------------------------------- 103 (203)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC--C----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcccc
Q 009799 243 AKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE--D----ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316 (525)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 316 (525)
...+.++..+|.++...|++++|+.++++++...+. + ..++..+|.++...|++++|+..+++++.+...
T Consensus 104 ----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 104 ----LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 134556788899999999999999999999976322 2 245689999999999999999999999997665
Q ss_pred ChhhHHHHHHHHHHhhh
Q 009799 317 LRSDFKMIARALTRKGT 333 (525)
Q Consensus 317 ~~~~~~~~~~~~~~~~~ 333 (525)
.... ...+.++..++.
T Consensus 180 ~~~~-~~~~~~~~~~~~ 195 (203)
T 3gw4_A 180 LEDS-EAVNELMTRLNG 195 (203)
T ss_dssp TTCH-HHHHHHHHHHHT
T ss_pred cCCH-HHHHHHHhcccc
Confidence 4322 233455555444
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.54 E-value=5.2e-14 Score=109.22 Aligned_cols=118 Identities=23% Similarity=0.377 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC-------HHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW-------SKGYS 74 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 74 (525)
++.++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+ +.+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999998877 88999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhc
Q 009799 75 RLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (525)
Q Consensus 75 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (525)
.+|.++...|++++|+..|+++++..| ++.....++.+....++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 688888888887776543
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.1e-14 Score=133.17 Aligned_cols=212 Identities=8% Similarity=0.056 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh-----------------HHHHHHHHHHhhcccHHHHHHHHHHhhcc
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH-----------------VLYSNRSAAHASLHNYADALADAKKTVEL 65 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 65 (525)
.+.+..|..+...|+|++|++.|.+++...|... .++..+|.+|...|++++|++.+.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999888643 35788999999999999999999999887
Q ss_pred CCCCH------HHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCc
Q 009799 66 KPDWS------KGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGP 139 (525)
Q Consensus 66 ~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (525)
.+... .+...+|.++...|++++|+..+++++...+....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------------------------- 130 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---------------------------------- 130 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC----------------------------------
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc----------------------------------
Confidence 65533 24556788888889999999999888764321100
Q ss_pred hhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCch
Q 009799 140 EMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSK 219 (525)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
T Consensus 131 -------------------------------------------------------------------------------- 130 (434)
T 4b4t_Q 131 -------------------------------------------------------------------------------- 130 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc------CCCCHHHHHHHHHH
Q 009799 220 EETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL------DDEDISYLTNRAAV 293 (525)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~ 293 (525)
....+.++..+|.++...|+|.+|+.++++++.. .|....++..+|.+
T Consensus 131 --------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 131 --------------------------VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184 (434)
T ss_dssp --------------------------CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 0024566788999999999999999999998865 23346789999999
Q ss_pred HHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhc
Q 009799 294 YLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTE 358 (525)
Q Consensus 294 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 358 (525)
|...|++++|...+++++...+.........+..+...|.++...++ +++|..+|.+++..
T Consensus 185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD----YKTAFSYFFESFES 245 (434)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHH
Confidence 99999999999999999998777665556668889999999999888 99999999999874
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.54 E-value=4.9e-14 Score=129.66 Aligned_cols=123 Identities=27% Similarity=0.414 Sum_probs=116.2
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLR----------------RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
...+..+|..++..|++++|+..|+++++ ..|.++.+|.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 55688899999999999999999999998 77778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccC
Q 009799 453 DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRGE 511 (525)
Q Consensus 453 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 511 (525)
+|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998766543
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.53 E-value=5.1e-14 Score=105.85 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCC--CHHHHHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPD--WSKGYSRLGAA 79 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 79 (525)
++.++.+|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..++++++.+|. +..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4568889999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred Hhhh-hhHHHHHHHHHHhhccCCCcH
Q 009799 80 HLGL-QDYIEAVNSYKKGLDIDPNNE 104 (525)
Q Consensus 80 ~~~~-g~~~~A~~~~~~al~~~p~~~ 104 (525)
+... |++++|+.++++++...|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999 999999999999999999763
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.53 E-value=1.6e-14 Score=109.50 Aligned_cols=102 Identities=19% Similarity=0.107 Sum_probs=90.6
Q ss_pred hcCCHHHHHHHHHHHhcc---CCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHH
Q 009799 14 SSGDYEAAVRHFTEAISL---SPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAV 90 (525)
Q Consensus 14 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 90 (525)
..|++++|+..|++++.. +|+++.+++.+|.++..+|++++|+..|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHhhHHhHHH
Q 009799 91 NSYKKGLDIDPNNEALKSGLADAKA 115 (525)
Q Consensus 91 ~~~~~al~~~p~~~~~~~~l~~~~~ 115 (525)
..|++++...|+++........+..
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999887655544433
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.6e-13 Score=130.73 Aligned_cols=210 Identities=13% Similarity=0.104 Sum_probs=170.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHcc
Q 009799 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI-----------------SYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (525)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 314 (525)
.....|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|+.++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 355678888999999999999999999887643 358899999999999999999999999987
Q ss_pred ccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHH
Q 009799 315 RELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEERE 394 (525)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 394 (525)
+...... ....+...+|.++...+. +++|+.++++++...+. ....+....++..
T Consensus 86 ~~~~~~~-~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 86 MQFAKSK-TVKVLKTLIEKFEQVPDS----LDDQIFVCEKSIEFAKR--------------------EKRVFLKHSLSIK 140 (434)
T ss_dssp HTSCHHH-HHHHHHHHHHHHCSCCSC----HHHHHHHHHHHHHHHHH--------------------SSCCSSHHHHHHH
T ss_pred HHccchH-HHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHH--------------------hCccHHHHHHHHH
Confidence 7654332 224556667777777777 99999999988873221 1134556788999
Q ss_pred hhhHHHhcCChhHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCC---CC----HHHHH
Q 009799 395 KGNEFFKQQKYPEAIQHYTESLRRN------PKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP---TF----SKGYT 461 (525)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~ 461 (525)
+|.++...|+|++|+.++++++... +....++..+|.+|...|++++|..++++++...+ .. ...+.
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 9999999999999999999988652 22357899999999999999999999999987632 22 34677
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcc
Q 009799 462 RKGAIQFFLKEYDKALETYQEGLKH 486 (525)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~a~~~ 486 (525)
.+|.++...|++++|..+|.++++.
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8899999999999999999999874
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.53 E-value=7.4e-14 Score=128.50 Aligned_cols=119 Identities=24% Similarity=0.427 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhc----------------cCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhcc
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAIS----------------LSPDNHVLYSNRSAAHASLHNYADALADAKKTVEL 65 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 65 (525)
+..+..+|..++..|+|++|+..|++++. .+|.+..++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999998 78888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhhc
Q 009799 66 KPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASAS 120 (525)
Q Consensus 66 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 120 (525)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888765
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.52 E-value=3.4e-14 Score=129.50 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=98.3
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (525)
+..+..+|..+...++ +++|+..|++++...|....+...++..++...+. ..+++++|.++...|+
T Consensus 179 a~~~~~~g~~~~~~g~----~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~---------~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEK----LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK---------NPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHHHTCSSSC----CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHH---------THHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHH---------HHHHHHHHHHHHHcCC
Confidence 6778888999998888 99999999999998777665555566665554432 2478899999999999
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ-FFLKEYDKALETYQEG 483 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~a 483 (525)
+++|+..|+++++.+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++..++.+. ...+..+++...|.++
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999884 4567788899999999
Q ss_pred hccCCCCHH
Q 009799 484 LKHDPQNQE 492 (525)
Q Consensus 484 ~~~~p~~~~ 492 (525)
+...|+++.
T Consensus 326 l~~~p~~~~ 334 (338)
T 2if4_A 326 FKGKDEGGA 334 (338)
T ss_dssp ---------
T ss_pred hCCCCCCCC
Confidence 999998764
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.51 E-value=1.7e-14 Score=137.75 Aligned_cols=136 Identities=19% Similarity=0.302 Sum_probs=118.9
Q ss_pred HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC
Q 009799 325 ARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK 404 (525)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (525)
+..+..+|..+...++ +++|+..|+++++ .+|.++.++..+|.++...|+
T Consensus 6 a~~~~~lg~~~~~~g~----~~~A~~~~~~Al~--------------------------~~p~~~~~~~~lg~~~~~~g~ 55 (477)
T 1wao_1 6 AEELKTQANDYFKAKD----YENAIKFYSQAIE--------------------------LNPSNAIYYGNRSLAYLRTEC 55 (477)
T ss_dssp HTTSSSSSSSTTTTTC----HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCC----HHHHHHHHHHHHH--------------------------hCCccHHHHHHHHHHHHHhcC
Confidence 4556667777777777 8888888888777 889999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHhcCHHHHHHHHH-
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI--QFFLKEYDKALETYQ- 481 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~- 481 (525)
+++|+..++++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+ +...|++++|+..++
T Consensus 56 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 56 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred ----------HHhccCCCC
Q 009799 482 ----------EGLKHDPQN 490 (525)
Q Consensus 482 ----------~a~~~~p~~ 490 (525)
+++.++|+.
T Consensus 136 ~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 136 KRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp CCSTTTCCTTSSCCCCTTC
T ss_pred cchhHhhhhhhhccccccc
Confidence 888888765
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.51 E-value=3.1e-14 Score=135.90 Aligned_cols=128 Identities=28% Similarity=0.511 Sum_probs=117.3
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 467 (525)
.+..+..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.+|
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH--HHHhhhhcccCCChH
Q 009799 468 FFLKEYDKALETYQEGLKHDPQNQELLDGVRRC--VQQINKAGRGELSPE 515 (525)
Q Consensus 468 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 515 (525)
..+|++++|+.+|+++++++|++..++..++.+ +...++..+|....+
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999998 777888888887654
No 189
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.47 E-value=9.8e-13 Score=110.79 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=119.4
Q ss_pred HHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhh
Q 009799 260 AYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMA 339 (525)
Q Consensus 260 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (525)
.+..|++++|...++.+....+....++..+|.++...|++++|+..+++++....... .....+.++..+|.++...+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG-DHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcC
Confidence 35679999999966655553336788999999999999999999999999999655432 22334788999999999999
Q ss_pred hcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCC-CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc
Q 009799 340 KCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDP-KIADEEREKGNEFFKQQKYPEAIQHYTESLRR 418 (525)
Q Consensus 340 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 418 (525)
+ +++|+..+++++..... ...+| ....++..+|.++...|++++|+.++++++..
T Consensus 81 ~----~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 81 N----WDAARRCFLEERELLAS--------------------LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp C----HHHHHHHHHHHHHHHHH--------------------SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHHHHH--------------------cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9 99999999999883110 00011 33556778888888888888888888888765
Q ss_pred CCC--C----HHHHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 419 NPK--D----PRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 419 ~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
.+. + ..++..+|.++...|++++|..++++++.+
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 321 1 234566777777777777777777776655
No 190
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.46 E-value=1.4e-10 Score=110.81 Aligned_cols=367 Identities=9% Similarity=-0.020 Sum_probs=228.3
Q ss_pred hcC-CHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh-HHHHHH
Q 009799 14 SSG-DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD-YIEAVN 91 (525)
Q Consensus 14 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 91 (525)
..| +...|...|++++...|. |+++.+...|++++...| +.+.|..........+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 488899999999988876 889999999999999999 78899888888777763 456677
Q ss_pred HHHHhhcc---CCCcHHHHhhHHhHHHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHh
Q 009799 92 SYKKGLDI---DPNNEALKSGLADAKAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQ 168 (525)
Q Consensus 92 ~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (525)
.|+.++.. +|.+...|...+..+...... ..-.+..-..+.+++.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~--------------------------------~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDE--------------------------------QTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSH--------------------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhh--------------------------------hHHHHHHHHHHHHHHh
Confidence 88888864 677888887776553211000 0000122333444444
Q ss_pred hCCCc-hhHHhhHHHHHHHHHHHHhhhccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhH
Q 009799 169 RNPNN-LNLYLKDQRVMQALGVLLNVKFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERK 247 (525)
Q Consensus 169 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (525)
.|.. ...+ ......+.... ++
T Consensus 118 -~P~~~~~~l------w~~Y~~fE~~~---------------------------------------------------~~ 139 (493)
T 2uy1_A 118 -TPMGSLSEL------WKDFENFELEL---------------------------------------------------NK 139 (493)
T ss_dssp -SCCTTHHHH------HHHHHHHHHHH---------------------------------------------------CH
T ss_pred -ChhhhHHHH------HHHHHHHHHHh---------------------------------------------------cc
Confidence 2321 1111 11111110000 00
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHccccC
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDE-DISYLTNRAAVYLEMGK---------YEECIKDCDKAVERGREL 317 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~---------~~~A~~~~~~~l~~~~~~ 317 (525)
..+. ..+-.....+..|...|..+....+. +...|...... ..++ .......|++++...|..
T Consensus 140 ~~~~-----~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~ 212 (493)
T 2uy1_A 140 ITGK-----KIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL--EMENGMKLGGRPHESRMHFIHNYILDSFYYA 212 (493)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccHH-----HHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHHHHHcCCCC
Confidence 0000 00011123445555555555543332 34455544433 2222 455778999999999987
Q ss_pred hhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHH-HhchH---HHHHHHHHHHhh----------
Q 009799 318 RSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLK-KLNEA---EKAKKELEQQEI---------- 383 (525)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~---~~a~~~~~~~~~---------- 383 (525)
..+|...+..+...++ .+.|...|++++.. |....+. ....+ ++....+.....
T Consensus 213 -------~~lW~~ya~~~~~~~~----~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 213 -------EEVYFFYSEYLIGIGQ----KEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp -------HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------
T ss_pred -------HHHHHHHHHHHHHcCC----HHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhh
Confidence 4556666666666666 99999999999999 7754221 11111 111111111110
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CchHHHHHHHHHHhcCCCCHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG-AMPEGLKDADKCIELDPTFSKGYTR 462 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~ 462 (525)
..+....+|...+....+.+..+.|...|.++ ...+....+|...|.+-...+ +.+.|...|+.+++..|+.+..+..
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~ 359 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE 359 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 11223466788888888888999999999999 443345677777777766666 6999999999999999999998888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccc
Q 009799 463 KGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAGRG 510 (525)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~a 510 (525)
.+......|+.+.|...|+++ +....+|..........|....+
T Consensus 360 yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHH
Confidence 888889999999999999998 34677777777776666654443
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.42 E-value=1.4e-12 Score=98.33 Aligned_cols=102 Identities=12% Similarity=0.215 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 406 PEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 406 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+.+|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CHHHHHHHHHHHHHhhhh
Q 009799 486 HDPQ--NQELLDGVRRCVQQINKA 507 (525)
Q Consensus 486 ~~p~--~~~~~~~l~~~~~~~~~~ 507 (525)
++|. +......+...+..+++.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhccc
Confidence 9884 456677777777777654
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.3e-13 Score=103.47 Aligned_cols=95 Identities=26% Similarity=0.318 Sum_probs=84.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCC------HHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDW------SKGYSR 75 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 75 (525)
++.++.+|..++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++.++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999998 888888
Q ss_pred HHHHHhhhhhHHHHHHHHHHh
Q 009799 76 LGAAHLGLQDYIEAVNSYKKG 96 (525)
Q Consensus 76 la~~~~~~g~~~~A~~~~~~a 96 (525)
+|.++...|+++.|+..+++.
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHhHhhhHhHHHHh
Confidence 999998888887777666554
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.40 E-value=1.1e-12 Score=106.10 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=118.1
Q ss_pred HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcC
Q 009799 324 IARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQ 403 (525)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (525)
.+.++..+|.++...++ +++|+..+++++...+... ..+....++..+|.++...|
T Consensus 8 ~~~~~~~l~~~~~~~~~----~~~A~~~~~~al~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g 63 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGN----FRDAVIAHEQRLLIAKEFG--------------------DKAAERIAYSNLGNAYIFLG 63 (164)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHhC--------------------CchHHHHHHHHHHHHHHHcC
Confidence 47889999999999999 9999999999998422110 11122467889999999999
Q ss_pred ChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhc
Q 009799 404 KYPEAIQHYTESLRRNPKD------PRTYSNRAACYTKLGAMPEGLKDADKCIELDP------TFSKGYTRKGAIQFFLK 471 (525)
Q Consensus 404 ~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g 471 (525)
++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+ ....++..+|.++...|
T Consensus 64 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 9999999999999875542 56889999999999999999999999997732 23568899999999999
Q ss_pred CHHHHHHHHHHHhccCCC
Q 009799 472 EYDKALETYQEGLKHDPQ 489 (525)
Q Consensus 472 ~~~~A~~~~~~a~~~~p~ 489 (525)
++++|+.++++++++...
T Consensus 144 ~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 144 NHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987554
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.38 E-value=2.8e-12 Score=103.59 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhh
Q 009799 247 KEKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI------SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSD 320 (525)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 320 (525)
+..+.++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+..+++++...+....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~- 84 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD- 84 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-
Confidence 45678889999999999999999999999998765422 47888999999999999999999999987665422
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
....+.++..+|.++...++ +++|+..+++++...+.. ...+....++..+|.++.
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~~--------------------~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQD----YEKAIDYHLKHLAIAQEL--------------------KDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHc--------------------cchHhHHHHHHHHHHHHH
Confidence 22336677778888887777 888888888777621110 011223445566666666
Q ss_pred hcCChhHHHHHHHHHHhcC
Q 009799 401 KQQKYPEAIQHYTESLRRN 419 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~ 419 (525)
..|++++|+.++++++++.
T Consensus 141 ~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHH
Confidence 6666666666666666543
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=5.7e-13 Score=99.88 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC------HHHHHHH
Q 009799 424 RTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN------QELLDGV 497 (525)
Q Consensus 424 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l 497 (525)
..+..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.+|+++++++|++ ..++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555555555555555555 5555555
Q ss_pred HHHHHHhhhhcccCCC
Q 009799 498 RRCVQQINKAGRGELS 513 (525)
Q Consensus 498 ~~~~~~~~~~~~a~~~ 513 (525)
+.++..+|+...+...
T Consensus 85 ~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHhHhhhHhH
Confidence 5555555554444433
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.34 E-value=7.6e-12 Score=94.28 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 009799 19 EAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (525)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 98 (525)
+.|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc--HHHHhhHHhHHHHHhh
Q 009799 99 IDPNN--EALKSGLADAKAAASA 119 (525)
Q Consensus 99 ~~p~~--~~~~~~l~~~~~~~~~ 119 (525)
+.|.+ ......+...+...+.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 98854 4455555555555544
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.31 E-value=3.5e-12 Score=93.20 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCchhH-HHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhh
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHV-LYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGL 83 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 83 (525)
.+.+|..++..|++++|+..|++++..+|+++. +++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 578999999999999999999999999999999 99999999999999999999999999999999987744
Q ss_pred hhHHHHHHHHHHhhccCCCcH
Q 009799 84 QDYIEAVNSYKKGLDIDPNNE 104 (525)
Q Consensus 84 g~~~~A~~~~~~al~~~p~~~ 104 (525)
+.+.+|+..|+++...+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 788999999999999888764
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.30 E-value=2e-11 Score=87.54 Aligned_cols=82 Identities=28% Similarity=0.449 Sum_probs=41.9
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 467 (525)
.+..++.+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred HH
Q 009799 468 FF 469 (525)
Q Consensus 468 ~~ 469 (525)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.30 E-value=2.4e-11 Score=87.09 Aligned_cols=85 Identities=27% Similarity=0.446 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 009799 421 KDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRC 500 (525)
Q Consensus 421 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 500 (525)
.++.+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 009799 501 VQQIN 505 (525)
Q Consensus 501 ~~~~~ 505 (525)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 88764
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.27 E-value=3.3e-11 Score=87.88 Aligned_cols=89 Identities=22% Similarity=0.301 Sum_probs=67.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC--CHHHHH
Q 009799 418 RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ--NQELLD 495 (525)
Q Consensus 418 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~ 495 (525)
.+|+++.+++.+|.++...|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+..|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 367788888888888888888888888888888888888888888888888888888888888888887664 345555
Q ss_pred HHHHHHHHhhh
Q 009799 496 GVRRCVQQINK 506 (525)
Q Consensus 496 ~l~~~~~~~~~ 506 (525)
.+..++...+.
T Consensus 82 ~l~~~l~~~~~ 92 (100)
T 3ma5_A 82 ELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHccc
Confidence 66666665544
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.22 E-value=1.8e-11 Score=89.41 Aligned_cols=91 Identities=23% Similarity=0.316 Sum_probs=71.7
Q ss_pred HHhhhHHHhcCChhHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 009799 393 REKGNEFFKQQKYPEAIQHYTESLRRNPKDPR-TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLK 471 (525)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 471 (525)
+..|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+.+|+++++++|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677788888888888888888888888888 88888888888888888888888888888888776643 5
Q ss_pred CHHHHHHHHHHHhccCCCCH
Q 009799 472 EYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 472 ~~~~A~~~~~~a~~~~p~~~ 491 (525)
.+.+++..|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 67777788887777777653
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.19 E-value=6.3e-11 Score=86.36 Aligned_cols=88 Identities=26% Similarity=0.335 Sum_probs=73.2
Q ss_pred cCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCc--HHHHh
Q 009799 31 LSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN--EALKS 108 (525)
Q Consensus 31 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~ 108 (525)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|++++++.|.. .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999987654 34444
Q ss_pred hHHhHHHHHh
Q 009799 109 GLADAKAAAS 118 (525)
Q Consensus 109 ~l~~~~~~~~ 118 (525)
.+..++...+
T Consensus 82 ~l~~~l~~~~ 91 (100)
T 3ma5_A 82 ELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcc
Confidence 5555554443
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.17 E-value=1.1e-09 Score=84.95 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=87.7
Q ss_pred hhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 009799 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF- 469 (525)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 469 (525)
+|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+.+++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 999999999999999999999987 689999999999999 89999999999999987 679999999999999
Q ss_pred ---hcCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 009799 470 ---LKEYDKALETYQEGLKHDPQNQELLDGVR 498 (525)
Q Consensus 470 ---~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 498 (525)
.+++++|+.+|+++.+.. ++.+...|+
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999999999999883 455554443
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.15 E-value=1.8e-09 Score=91.51 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=94.5
Q ss_pred hcCCCcHHHHHHhhhHHHh-----cCC------hhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCchHHHH
Q 009799 383 IFDPKIADEEREKGNEFFK-----QQK------YPEAIQHYTESLRRNPK--DPRTYSNRAACYTKL-----GAMPEGLK 444 (525)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~-----~~~------~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----~~~~~A~~ 444 (525)
..+|++++.++..|.+... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3678889888877766532 233 57899999999999999 677999999999995 99999999
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHH-hcCHHHHHHHHHHHhccCCCC
Q 009799 445 DADKCIELDPTF-SKGYTRKGAIQFF-LKEYDKALETYQEGLKHDPQN 490 (525)
Q Consensus 445 ~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~ 490 (525)
+|+++++++|+. ..+++..|..+.. .|++++|..++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 599999999999999988773
No 205
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.04 E-value=2.4e-09 Score=81.71 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcCHHHHHHH
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG---AMPEGLKDADKCIELD-P-TFSKGYTRKGAIQFFLKEYDKALET 479 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 479 (525)
...+.+.|.+.+..+|.+..+.+++|+++.+.+ +.++++..++.+++.+ | ++.++++++|..++++|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456777788888888888999999999999988 6679999999999988 7 5688999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 480 YQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 480 ~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
++++++++|+|..+......+...+.+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999998888777766654
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.01 E-value=3.8e-09 Score=74.78 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHHcCC---chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH
Q 009799 419 NPKDPRTYSNRAACYTKLGA---MPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 419 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 491 (525)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57788888888888876655 68888888888888888888888888888888888888888888888888743
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.01 E-value=6.3e-10 Score=105.27 Aligned_cols=121 Identities=9% Similarity=-0.033 Sum_probs=63.7
Q ss_pred HHHhchHHHHHHHHHHHhhc--------CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc-----CCCC---HHHHHH
Q 009799 365 LKKLNEAEKAKKELEQQEIF--------DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR-----NPKD---PRTYSN 428 (525)
Q Consensus 365 ~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~ 428 (525)
+...|++++|+..+++++.. +|....++.++|.+|..+|+|++|+.++++++.+ .|++ ...+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44455556665555555542 2333344555555666666666666666655533 2333 234555
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 429 RAACYTKLGAMPEGLKDADKCIEL-----DPTFS---KGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 429 la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
+|.+|..+|++++|+.+|++|+++ .|+++ .....++.++..+|.+++|...|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655543 23333 2334555555555556666555555543
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.00 E-value=1.2e-09 Score=103.38 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHhcCCC----------------hhHHHHhchHHHHHHHHHHHhhc--------CCCcHHHHHHhhhHHH
Q 009799 345 YEPAIETFQKALTEHRN----------------PDTLKKLNEAEKAKKELEQQEIF--------DPKIADEEREKGNEFF 400 (525)
Q Consensus 345 ~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 400 (525)
|++|+..+++++..... ..++...|++++|+..+++++.. +|.....+.++|.+|.
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 404 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW 404 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 88888888888875432 12456678888888888887763 4555667788888888
Q ss_pred hcCChhHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCchHHHHHHHHHHh
Q 009799 401 KQQKYPEAIQHYTESLRR-----NPKDP---RTYSNRAACYTKLGAMPEGLKDADKCIE 451 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (525)
.+|++++|+.+|++++++ .|++| .+..+++.++..++.+++|...|.++.+
T Consensus 405 ~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 405 HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888854 45554 4556788888888888888888877754
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.98 E-value=1.3e-08 Score=78.95 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=99.6
Q ss_pred cCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHH
Q 009799 298 GKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKE 377 (525)
Q Consensus 298 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 377 (525)
+++++|+.+|+++.+..... +. +|.+|..... .++|+.+|+++.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~---------a~--lg~~y~~g~~----~~~A~~~~~~Aa~-------------------- 53 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF---------GC--LSLVSNSQIN----KQKLFQYLSKACE-------------------- 53 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT---------HH--HHHHTCTTSC----HHHHHHHHHHHHH--------------------
T ss_pred cCHHHHHHHHHHHHcCCCHh---------hh--HHHHHHcCCC----HHHHHHHHHHHHc--------------------
Confidence 57889999999998876432 22 6777766666 8889999998877
Q ss_pred HHHHhhcCCCcHHHHHHhhhHHHh----cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHH
Q 009799 378 LEQQEIFDPKIADEEREKGNEFFK----QQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTK----LGAMPEGLKDADKC 449 (525)
Q Consensus 378 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 449 (525)
. .++.+.+.+|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++
T Consensus 54 ------~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 54 ------L--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp ------T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ------C--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 3 678999999999998 89999999999999987 679999999999999 99999999999999
Q ss_pred HhcCCCCHHHHHHHH
Q 009799 450 IELDPTFSKGYTRKG 464 (525)
Q Consensus 450 l~~~p~~~~~~~~la 464 (525)
.+. .++.+...++
T Consensus 124 a~~--g~~~A~~~l~ 136 (138)
T 1klx_A 124 CRL--GSEDACGILN 136 (138)
T ss_dssp HHT--TCHHHHHHC-
T ss_pred HHC--CCHHHHHHHh
Confidence 987 4556655554
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.98 E-value=3.2e-09 Score=75.16 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=67.0
Q ss_pred CCchhHHHHHHHHHHhhccc---HHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHH
Q 009799 32 SPDNHVLYSNRSAAHASLHN---YADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEA 105 (525)
Q Consensus 32 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 105 (525)
+|+++..+..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+..|+++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68899999999999976666 799999999999999999999999999999999999999999999999998443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.97 E-value=2.5e-08 Score=88.55 Aligned_cols=121 Identities=14% Similarity=0.130 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCC----hhHHHH----HHH--H
Q 009799 345 YEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQK----YPEAIQ----HYT--E 414 (525)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~----~~~--~ 414 (525)
..+|+.+|+++++ .+|+.+.++..++.++..... ...... .++ .
T Consensus 215 ~~~A~~l~e~Al~--------------------------lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 215 LNRASELLGEIVQ--------------------------SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp HHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 5677777777777 899999888888877753211 111111 222 1
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Q 009799 415 SLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 415 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 492 (525)
++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 23567889999999999999999999999999999999975 778899999999999999999999999999998763
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=5.8e-09 Score=79.58 Aligned_cols=103 Identities=11% Similarity=0.036 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcc---cHHHHHHHHHHhhccC-C-CCHHHHHHHHHHHhhhhhHHHHHH
Q 009799 17 DYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH---NYADALADAKKTVELK-P-DWSKGYSRLGAAHLGLQDYIEAVN 91 (525)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 91 (525)
....+.+.|.+.+..+|.+..+.+.+|+++.+.+ +.++++..++.+++.+ | ++.++++.+|..+.++|+|++|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3567788889888888999999999999999988 7779999999999998 7 578999999999999999999999
Q ss_pred HHHHhhccCCCcHHHHhhHHhHHHHHhh
Q 009799 92 SYKKGLDIDPNNEALKSGLADAKAAASA 119 (525)
Q Consensus 92 ~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (525)
+++++++++|++..+......+.....+
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999988877766665544
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.93 E-value=1.2e-07 Score=84.24 Aligned_cols=155 Identities=12% Similarity=-0.028 Sum_probs=104.0
Q ss_pred HhhcCCCCHHH--HHHHHHHHHHhcC---HHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHH
Q 009799 276 ALELDDEDISY--LTNRAAVYLEMGK---YEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIE 350 (525)
Q Consensus 276 ~l~~~p~~~~~--~~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 350 (525)
+....|.++.+ ++..|..+...++ ..+|+.+|+++++++|++...+..++.++..+.. .+. .......
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~----~~~---~~~~~~~ 258 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS----QHP---LDEKQLA 258 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH----HSC---CCHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc----cCC---CchhhHH
Confidence 33445665544 3445555555443 4678888888888888875444433333331100 000 0001111
Q ss_pred HHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 009799 351 TFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRA 430 (525)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 430 (525)
.+. .+... ...+...|..+.++..++..+...|++++|+..+++++.++| +...|..+|
T Consensus 259 ~l~-------------------~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG 317 (372)
T 3ly7_A 259 ALN-------------------TEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLG 317 (372)
T ss_dssp HHH-------------------HHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHH-------------------HHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 111 11110 112236789999999999999999999999999999999997 577889999
Q ss_pred HHHHHcCCchHHHHHHHHHHhcCCCCHH
Q 009799 431 ACYTKLGAMPEGLKDADKCIELDPTFSK 458 (525)
Q Consensus 431 ~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (525)
.++...|++++|++.|++|+.++|..+.
T Consensus 318 ~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 318 KVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999999999999998754
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.90 E-value=9.2e-08 Score=81.15 Aligned_cols=85 Identities=14% Similarity=0.033 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcCCC--cHHHHHHhhhHHHhc-----CChhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCchHH
Q 009799 372 EKAKKELEQQEIFDPK--IADEEREKGNEFFKQ-----QKYPEAIQHYTESLRRNPKD-PRTYSNRAACYTK-LGAMPEG 442 (525)
Q Consensus 372 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~~~~~~A 442 (525)
..|...++++++++|+ +..+|..+|.+|... |+.++|..+|+++++++|+. ..+++..|..+.. .|++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3344444455558998 677999999999994 99999999999999999975 9999999999988 4999999
Q ss_pred HHHHHHHHhcCCCC
Q 009799 443 LKDADKCIELDPTF 456 (525)
Q Consensus 443 ~~~~~~al~~~p~~ 456 (525)
..++++++..+|..
T Consensus 260 ~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 260 DEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCGGG
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999988763
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.83 E-value=2.6e-08 Score=72.68 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------CchhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLS-------PDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYS 74 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 74 (525)
++..+.+|..++..|+|..|+.+|++|+... +..+.++..+|.++.++|+++.|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4678899999999999999999999999853 346788899999999999999999999999999999988877
Q ss_pred HHH
Q 009799 75 RLG 77 (525)
Q Consensus 75 ~la 77 (525)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 766
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.82 E-value=5.2e-08 Score=71.07 Aligned_cols=81 Identities=10% Similarity=-0.070 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Q 009799 423 PRTYSNRAACYTKLGAMPEGLKDADKCIELD-------PTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (525)
Q Consensus 423 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 495 (525)
+.-.+.+|..++..|+|..|+.+|+.|++.. +..+.++..+|.++.++|+++.|+.+++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445566666666666666666666666542 234667777777777777777777777777777777777776
Q ss_pred HHHHHHHH
Q 009799 496 GVRRCVQQ 503 (525)
Q Consensus 496 ~l~~~~~~ 503 (525)
++......
T Consensus 85 n~~~~~~~ 92 (104)
T 2v5f_A 85 NLKYFEYI 92 (104)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 66644333
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.71 E-value=6.9e-08 Score=89.79 Aligned_cols=97 Identities=8% Similarity=0.022 Sum_probs=82.4
Q ss_pred HhcCChhHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCchHHHHHHHHHHhc-----CCCC---HHHHHHH
Q 009799 400 FKQQKYPEAIQHYTESLRR-----NPKDP---RTYSNRAACYTKLGAMPEGLKDADKCIEL-----DPTF---SKGYTRK 463 (525)
Q Consensus 400 ~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l 463 (525)
...|+|++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++.+ .|++ ...+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999974 45554 67889999999999999999999999976 3444 5578999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcc-----CCCCHHHHHH
Q 009799 464 GAIQFFLKEYDKALETYQEGLKH-----DPQNQELLDG 496 (525)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~ 496 (525)
|.+|..+|++++|+.+|++|+++ .|++|.+...
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 99999999999999999999885 6888876653
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.65 E-value=7.9e-08 Score=89.41 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc-----CCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhcc-----CCCC--
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISL-----SPDN---HVLYSNRSAAHASLHNYADALADAKKTVEL-----KPDW-- 69 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~-- 69 (525)
.+..+......|+|++|+..|++++.+ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 344455556679999999999999985 4444 477899999999999999999999999975 3444
Q ss_pred -HHHHHHHHHHHhhhhhHHHHHHHHHHhhcc-----CCCcHHHHh
Q 009799 70 -SKGYSRLGAAHLGLQDYIEAVNSYKKGLDI-----DPNNEALKS 108 (525)
Q Consensus 70 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 108 (525)
...+.++|.+|..+|++++|+..|++++++ .|+++....
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 457899999999999999999999999875 577766543
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.65 E-value=9.1e-08 Score=89.26 Aligned_cols=109 Identities=12% Similarity=0.187 Sum_probs=88.2
Q ss_pred hHHHhcCChhHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCchHHHHHHHHHHhc-----CCCC---HHHH
Q 009799 397 NEFFKQQKYPEAIQHYTESLRR-----NPKDP---RTYSNRAACYTKLGAMPEGLKDADKCIEL-----DPTF---SKGY 460 (525)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~ 460 (525)
.-+..+|+|++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++.+ .|++ ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3456789999999999999975 34454 67899999999999999999999999976 3444 4578
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcc-----CCCCHHHHH---HHHHHHHHhh
Q 009799 461 TRKGAIQFFLKEYDKALETYQEGLKH-----DPQNQELLD---GVRRCVQQIN 505 (525)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~---~l~~~~~~~~ 505 (525)
+++|.+|..+|++++|+.+|++|+++ .|++|.+.. .|+.+...++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999885 688876554 4555555443
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.58 E-value=6.4e-07 Score=65.59 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcCHHHHHHH
Q 009799 405 YPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPE---GLKDADKCIELD-P-TFSKGYTRKGAIQFFLKEYDKALET 479 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 479 (525)
...+...|.+.+..++.+..+.+++|+++.+..+... ++..++..+..+ | ..-++++.+|..++++|+|.+|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455566666666666777788888888887776655 777777777765 4 4566788888888888888888888
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 480 YQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 480 ~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
++.+++..|+|.++......+..++.+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 888888888888887776666655543
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.57 E-value=2.6e-07 Score=86.21 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CCch---hHHHHHHHHHHhhcccHHHHHHHHHHhhcc-----CCCC-
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISL-----SPDN---HVLYSNRSAAHASLHNYADALADAKKTVEL-----KPDW- 69 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~- 69 (525)
........+..+|+|++|+..+++++.+ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3455566778899999999999999975 3443 478899999999999999999999999965 3444
Q ss_pred --HHHHHHHHHHHhhhhhHHHHHHHHHHhhcc-----CCCcHHHHhh
Q 009799 70 --SKGYSRLGAAHLGLQDYIEAVNSYKKGLDI-----DPNNEALKSG 109 (525)
Q Consensus 70 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 109 (525)
...+..+|.+|..+|++++|+..|++++++ .|+++.....
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 457889999999999999999999999864 6777765543
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.50 E-value=1.4e-06 Score=63.87 Aligned_cols=102 Identities=12% Similarity=0.037 Sum_probs=87.5
Q ss_pred cCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHH---HHHHHHHhhccC-C-CCHHHHHHHHHHHhhhhhHHHH
Q 009799 15 SGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYAD---ALADAKKTVELK-P-DWSKGYSRLGAAHLGLQDYIEA 89 (525)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A 89 (525)
......+...|.+.+..++.+..+.+.+|+++.+..+... ++..++..+..+ | ..-++++.+|..+.++|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445667778888888788889999999999999987776 999999999987 5 5678999999999999999999
Q ss_pred HHHHHHhhccCCCcHHHHhhHHhHHHH
Q 009799 90 VNSYKKGLDIDPNNEALKSGLADAKAA 116 (525)
Q Consensus 90 ~~~~~~al~~~p~~~~~~~~l~~~~~~ 116 (525)
..+++.+++..|+|..+......+...
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999887766555443
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.30 E-value=2.7e-05 Score=58.19 Aligned_cols=112 Identities=11% Similarity=0.025 Sum_probs=96.5
Q ss_pred cCCCcHHHHHHhhhHHHhcCCh------hHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCchHHHHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKY------PEAIQHYTESLRRNPKD--------PRTYSNRAACYTKLGAMPEGLKDADKC 449 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a 449 (525)
..|.+++.|..........|+. ++-++.|++++..-|.. ..+|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6899999999999999989999 88999999999877643 3566666755 5679999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHH
Q 009799 450 IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDG 496 (525)
Q Consensus 450 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 496 (525)
+.++...+.+|...|..-.++|+...|.+.+.+++.+.|...+.+..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99988889999999999999999999999999999999997766544
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.14 E-value=0.00027 Score=67.52 Aligned_cols=183 Identities=11% Similarity=0.104 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcc--ccChhhHHHHHHHHHHhhhh--HHHhhhcccchHHHHHHHHHHHhcCCCh
Q 009799 287 LTNRAAVYLEMGKYEECIKDCDKAVERG--RELRSDFKMIARALTRKGTA--LVKMAKCSKDYEPAIETFQKALTEHRNP 362 (525)
Q Consensus 287 ~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 362 (525)
+...-..+.+.|+.++|+.+|++..... |+ ...+..+..++...+.. ....+. .+.|...|++.....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~----l~~A~~lf~~M~~~G--- 100 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPG----LSRGFDIFKQMIVDK--- 100 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHH----HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcch----HHHHHHHHHHHHHhC---
Confidence 4445566778888888888888887643 32 12221111111111100 011222 667777777666522
Q ss_pred hHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchH
Q 009799 363 DTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRN-PKDPRTYSNRAACYTKLGAMPE 441 (525)
Q Consensus 363 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 441 (525)
..| +..+|..+...|.+.|++++|..+|++..+.. +.+..+|..+-..|.+.|+.++
T Consensus 101 ---------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 101 ---------------------VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp ---------------------CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHH
Confidence 223 46678889999999999999999999987653 2368889999999999999999
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHH
Q 009799 442 GLKDADKCIEL--DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK--HDPQNQELLDGVRRCV 501 (525)
Q Consensus 442 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~ 501 (525)
|.+.|+...+. .| +...|..+-..+.+.|+.++|.+.|++..+ ..|+.. .+..+....
T Consensus 159 A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~-T~~~l~~~F 220 (501)
T 4g26_A 159 AYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS-TFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH-HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHH
Confidence 99999998875 34 477889999999999999999999999876 456543 334444333
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.10 E-value=0.00016 Score=54.11 Aligned_cols=128 Identities=13% Similarity=-0.042 Sum_probs=89.3
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHccccC-hhhHHHHHHHHHHhhhhHHHhhhcccchHHHHH
Q 009799 278 ELDDEDISYLTNRAAVYLEMGKY------EECIKDCDKAVERGREL-RSDFKMIARALTRKGTALVKMAKCSKDYEPAIE 350 (525)
Q Consensus 278 ~~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 350 (525)
-+.|++++.|..........|++ +.-++.|++++..-|.. ...+...+.+|.+.+.. ...++ .++|..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D----~d~aR~ 81 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQE----PDDARD 81 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHC----GGGCHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcC----HHHHHH
Confidence 45799999999999999999999 89999999999876653 23334445666665543 34455 777777
Q ss_pred HHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 009799 351 TFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRA 430 (525)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 430 (525)
.|+.++. .+...+.+|...|..-.++|+...|.+.+.+++.+.|..... ...|
T Consensus 82 vy~~a~~--------------------------~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a 134 (161)
T 4h7y_A 82 YFQMARA--------------------------NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIA 134 (161)
T ss_dssp HHHHHHH--------------------------HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHH
T ss_pred HHHHHHH--------------------------HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHH
Confidence 7777766 344457788888888888888888888888888888765443 3334
Q ss_pred HHHHHcC
Q 009799 431 ACYTKLG 437 (525)
Q Consensus 431 ~~~~~~~ 437 (525)
..-.+.|
T Consensus 135 ~~nl~~~ 141 (161)
T 4h7y_A 135 LRNLNLQ 141 (161)
T ss_dssp HHHHHTT
T ss_pred HHhhhcC
Confidence 3344444
No 226
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.08 E-value=0.00046 Score=65.88 Aligned_cols=163 Identities=10% Similarity=-0.014 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHcc--ccChhh
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELD-DEDISYLTNRAAVYLEMG---------KYEECIKDCDKAVERG--RELRSD 320 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~l~~~--~~~~~~ 320 (525)
+...-..+.+.|+.++|+.+|+++.+.. +-+..++..+-.++...+ ..++|..+|++..... |+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---- 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---- 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC----
Confidence 4445577889999999999999988753 224566666666665443 4789999999987753 33
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q 009799 321 FKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFF 400 (525)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
..+|..+-..+.+.|+ +++|..+|++..... ..| +...|..+-..|.
T Consensus 105 ----~~tyn~lI~~~~~~g~----~~~A~~l~~~M~~~g------------------------~~P-d~~tyn~lI~~~~ 151 (501)
T 4g26_A 105 ----EATFTNGARLAVAKDD----PEMAFDMVKQMKAFG------------------------IQP-RLRSYGPALFGFC 151 (501)
T ss_dssp ----HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHTT------------------------CCC-CHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcC------------------------CCC-ccceehHHHHHHH
Confidence 3456666666677777 999999999887632 223 4667888888899
Q ss_pred hcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 401 KQQKYPEAIQHYTESLRRNP-KDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
+.|+.++|..+|++..+..- .+..+|..+-..+.+.|+.++|..++++..+.
T Consensus 152 ~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 152 RKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99999999999999876532 26778889999999999999999999987654
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.08 E-value=0.00016 Score=53.74 Aligned_cols=87 Identities=15% Similarity=0.012 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHcCCc---hHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Q 009799 420 PKDPRTYSNRAACYTKLGAM---PEGLKDADKCIELDPT-FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLD 495 (525)
Q Consensus 420 ~~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 495 (525)
..++.+.+++|+++.+..+. .+++..++..+...|. .-+.++.+|..++++|+|.+|..+.+.+++..|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44788899999999988764 5788999999988884 5678999999999999999999999999999999999888
Q ss_pred HHHHHHHHhhh
Q 009799 496 GVRRCVQQINK 506 (525)
Q Consensus 496 ~l~~~~~~~~~ 506 (525)
....+..++.+
T Consensus 116 Lk~~Ie~~i~k 126 (144)
T 1y8m_A 116 LKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666644
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.07 E-value=1.2e-05 Score=61.68 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchh---------HHHHHHHHHHhhcccHHHHHHHHHHhhccC---CC---
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNH---------VLYSNRSAAHASLHNYADALADAKKTVELK---PD--- 68 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~--- 68 (525)
.++.....++..|.|+.|+.....++....+++ .++..+|.+++..|+|..|...|+++++.. |+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 478889999999999999999999877643333 488999999999999999999999986531 11
Q ss_pred -------------------CHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhH
Q 009799 69 -------------------WSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (525)
Q Consensus 69 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (525)
..+..+.++.||.++|++.+|+..++..-. .-..+.....|+.+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL 164 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence 126889999999999999999999876422 12234444444443
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.06 E-value=5.9e-05 Score=55.31 Aligned_cols=85 Identities=15% Similarity=0.013 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCc---hHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Q 009799 422 DPRTYSNRAACYTKLGAM---PEGLKDADKCIELDPT-FSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGV 497 (525)
Q Consensus 422 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 497 (525)
++.+.+++|+++.+..+. .+++..++..+..+|. .-+.++.+|..++++|+|++|..+.+.+++..|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 567778888888877654 4678888888877773 467788888888888888888888888888888888887777
Q ss_pred HHHHHHhhh
Q 009799 498 RRCVQQINK 506 (525)
Q Consensus 498 ~~~~~~~~~ 506 (525)
..+-.++.+
T Consensus 119 ~~Ie~ki~k 127 (134)
T 3o48_A 119 SMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 766666543
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.79 E-value=0.00042 Score=51.58 Aligned_cols=97 Identities=7% Similarity=-0.091 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHhhccc---HHHHHHHHHHhhccCCC-CHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009799 20 AAVRHFTEAISLSPDNHVLYSNRSAAHASLHN---YADALADAKKTVELKPD-WSKGYSRLGAAHLGLQDYIEAVNSYKK 95 (525)
Q Consensus 20 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 95 (525)
.....|.+-.. ++-++.+.+++|+++.+..+ ..+++..++..+...|. .-+.++.+|..+.++|+|++|..+.+.
T Consensus 24 ~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 24 ILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp HHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33444444322 34568999999999998875 45799999999998884 568999999999999999999999999
Q ss_pred hhccCCCcHHHHhhHHhHHHHH
Q 009799 96 GLDIDPNNEALKSGLADAKAAA 117 (525)
Q Consensus 96 al~~~p~~~~~~~~l~~~~~~~ 117 (525)
+++..|+|..+......+....
T Consensus 103 lL~~eP~n~QA~~Lk~~Ie~~i 124 (144)
T 1y8m_A 103 LFEHERNNKQVGALKSMVEDKI 124 (144)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHH
Confidence 9999999998877666655554
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.79 E-value=0.00048 Score=50.55 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=69.9
Q ss_pred CcHHHHHHhhhHHHhcCCh---hHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHH
Q 009799 387 KIADEEREKGNEFFKQQKY---PEAIQHYTESLRRNPK-DPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTR 462 (525)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 462 (525)
-.+.+.+.+|+++.+..+. .+++.+++..++..|. .-+.++.+|..+.++|+|++|..+.+.+++..|++..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3578899999999988764 5799999999998884 46889999999999999999999999999999999888766
Q ss_pred HHHHH
Q 009799 463 KGAIQ 467 (525)
Q Consensus 463 la~~~ 467 (525)
...+-
T Consensus 118 k~~Ie 122 (134)
T 3o48_A 118 KSMVE 122 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 232
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.79 E-value=0.00021 Score=54.88 Aligned_cols=110 Identities=5% Similarity=-0.066 Sum_probs=75.3
Q ss_pred HHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHcCCchHHHHHHHHHHhcC------C-
Q 009799 391 EEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP---------RTYSNRAACYTKLGAMPEGLKDADKCIELD------P- 454 (525)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p- 454 (525)
+++.-...++..|.|+.|+-....++....+++ .++..+|.+++..|+|..|...|++++... |
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555667777888888877777665432222 367778888888888888888888876431 1
Q ss_pred ------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009799 455 ------------------TFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCV 501 (525)
Q Consensus 455 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 501 (525)
.+.++.+.++.||..+|++++|+..++.+- ..-..+.+...|++++
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 123678899999999999999999887642 2223466666666654
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.10 E-value=0.079 Score=48.12 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=73.7
Q ss_pred HHhhhHHHhcCChhHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCchHHHHHHHHHHhcC---CCCH----HH
Q 009799 393 REKGNEFFKQQKYPEAIQHYTESLRRNPK--D----PRTYSNRAACYTKLGAMPEGLKDADKCIELD---PTFS----KG 459 (525)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~----~~ 459 (525)
..+|..|+..|+|.+|.+.+.+..+.... + .+++..-..+|...+++.++...+.++.... +.+| ..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47899999999999999999888764322 2 3567778888999999999999999887542 1222 34
Q ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHhcc
Q 009799 460 YTRKGAIQF-FLKEYDKALETYQEGLKH 486 (525)
Q Consensus 460 ~~~la~~~~-~~g~~~~A~~~~~~a~~~ 486 (525)
...-|.++. ..++|.+|..+|-.++.-
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 566678888 899999999999998754
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.049 Score=53.98 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKA 310 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 310 (525)
....+...+..+...|+++-|+.+.++++...|.+...|..|+.+|..+|+|+.|+-.++.+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34456667888899999999999999999999999999999999999999999999888776
No 235
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.77 E-value=0.12 Score=39.56 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=77.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcccHHHHHHHHHHhhc--c--C-------------CC
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVE--L--K-------------PD 68 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~--~-------------p~ 68 (525)
...+..++-.|.|..|+-.+.+. +...+.+..+.||...+++..|+..++..+. . + |.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 35678889999999988776543 4578888899999999999999999999983 2 2 33
Q ss_pred CHH-HHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHH
Q 009799 69 WSK-GYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEAL 106 (525)
Q Consensus 69 ~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 106 (525)
+.+ .+..+|.++...|+.++|+.+|......+|-.+.+
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 333 35678999999999999999999999988866544
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.70 E-value=0.038 Score=42.19 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=81.1
Q ss_pred CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc----C-------
Q 009799 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL----D------- 453 (525)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~------- 453 (525)
-|..++.-..++.+++-.|.|..|+-.+. .-+.....+..+.||.++++|..|+.++++.++- +
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 44555667788899999999999887764 2345677888999999999999999999999932 2
Q ss_pred ------CCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHH
Q 009799 454 ------PTFSK-GYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELL 494 (525)
Q Consensus 454 ------p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 494 (525)
|.+-+ .+..+|.++.+.|+.++|+.+|......+|--+.+-
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 33333 566789999999999999999999999888655443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0098 Score=58.84 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 425 TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
.+..-+..+...|+++-|+.+.++|+...|....+|+.|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445555666777777777777777777777777777777777777777777665554
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.097 Score=48.93 Aligned_cols=193 Identities=11% Similarity=0.101 Sum_probs=118.0
Q ss_pred cccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHH
Q 009799 263 KKEFEKAIEHYSSALEL------DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALV 336 (525)
Q Consensus 263 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (525)
.|+++.|++.+....+. .+....+...+..++...|+++...+.+.-..............+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~------------ 96 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYM------------ 96 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHH------------
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHH------------
Confidence 46788888877554432 234567888888999999999988777765444332221111100
Q ss_pred HhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcC-------CCcHHHHHHhhhHHHhcCChhHHH
Q 009799 337 KMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFD-------PKIADEEREKGNEFFKQQKYPEAI 409 (525)
Q Consensus 337 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~ 409 (525)
...+..++.. .|..+ .+.-+.......... -........++.++...|++.+|.
T Consensus 97 --------V~~~~~~l~~----~~~~d-------~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~ 157 (445)
T 4b4t_P 97 --------IQKVMEYLKS----SKSLD-------LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAA 157 (445)
T ss_dssp --------HHHHHHHHHH----HCTTH-------HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred --------HHHHHHHHhc----CCchh-------HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 1111111111 01100 000001111000011 113456678899999999999999
Q ss_pred HHHHHHHhcC--CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHHh---cCCCCH----HHHHHHHHHHHHhcCHHHH
Q 009799 410 QHYTESLRRN--PKD----PRTYSNRAACYTKLGAMPEGLKDADKCIE---LDPTFS----KGYTRKGAIQFFLKEYDKA 476 (525)
Q Consensus 410 ~~~~~al~~~--~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~~A 476 (525)
..+.....-. ..+ ..++....+++...+++..|...+.++.. ..+..+ ..+...|.++...++|.+|
T Consensus 158 ~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 158 DILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9998876321 111 46778888999999999999999988742 223333 3567788899999999999
Q ss_pred HHHHHHHhcc
Q 009799 477 LETYQEGLKH 486 (525)
Q Consensus 477 ~~~~~~a~~~ 486 (525)
..+|..++..
T Consensus 238 ~~~y~e~~~~ 247 (445)
T 4b4t_P 238 AQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.54 E-value=0.44 Score=43.28 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCC--C----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHH
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDE--D----ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIAR 326 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 326 (525)
-..+|..|+..|+|.+|...+.++++.... + .+++..-..+|...+++.++...+.++..............+.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 347899999999999999999998874222 1 3567777889999999999999999998754322133344588
Q ss_pred HHHHhhhhHH-HhhhcccchHHHHHHHHHHHhcC
Q 009799 327 ALTRKGTALV-KMAKCSKDYEPAIETFQKALTEH 359 (525)
Q Consensus 327 ~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~ 359 (525)
+...-|..+. ..++ |..|...|-.++...
T Consensus 182 i~~~~Gi~~l~~~rd----yk~A~~~F~eaf~~f 211 (394)
T 3txn_A 182 LDLQSGILHAADERD----FKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHTTSC----HHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccC----HHHHHHHHHHHHhcc
Confidence 8888888888 7888 999999998887543
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.54 E-value=0.026 Score=51.75 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCch----------------------hHHHHHHHHHHhhcccHHHHHHHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDN----------------------HVLYSNRSAAHASLHNYADALADAKK 61 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 61 (525)
.+...|......|+.+.|...+.+++.+-... ..+...++..+...|++.+|+..+.+
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45566777778899999999999999873211 03344567788899999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 009799 62 TVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (525)
Q Consensus 62 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 98 (525)
++..+|-+-.++..+-.++...|+..+|+..|+++.+
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988643
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.34 E-value=0.21 Score=42.03 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=57.4
Q ss_pred HHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChh
Q 009799 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRS 319 (525)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 319 (525)
...++.|+.++|+......++.+|.|......+..+++-.|+++.|...++.+.+++|+...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 34677899999999999999999999999999999999999999999999999999998643
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.13 E-value=0.45 Score=48.71 Aligned_cols=110 Identities=8% Similarity=0.003 Sum_probs=64.8
Q ss_pred CCcHHHHHHhhhHHHhcCChhHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCH
Q 009799 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLR--------RNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFS 457 (525)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 457 (525)
.+++..|..+|..+...++++.|+.+|.++-. ....+...+..++......|++..|...|.+. .+
T Consensus 678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~- 751 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD- 751 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC-
T ss_pred hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC-
Confidence 35678999999999999999999999988621 12334444555556666666666555554432 11
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHhhh
Q 009799 458 KGYTRKGAIQFFLKEYDKALETYQEGLKHDPQN---QELLDGVRRCVQQINK 506 (525)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~ 506 (525)
......+|...+++++|+..-++ ..|.. +.+...++.-+...|+
T Consensus 752 --~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~ 798 (814)
T 3mkq_A 752 --IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGK 798 (814)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred --HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccc
Confidence 12233445556666666554433 44544 2455555555555553
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.96 E-value=0.2 Score=42.12 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=53.6
Q ss_pred HHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHH
Q 009799 44 AAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEAL 106 (525)
Q Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 106 (525)
..+++.|+.++|+......++.+|.+......+..+++-.|+++.|...++.+.+++|+....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 346778888899999999899999999888888899999999999999999888888887553
No 244
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.052 Score=51.11 Aligned_cols=79 Identities=13% Similarity=0.022 Sum_probs=56.9
Q ss_pred HHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009799 391 EEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFF 469 (525)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 469 (525)
.+..+|++......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4556777777777777777777777777777777777777777777777777777777776655567777777666543
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.80 E-value=1.2 Score=41.48 Aligned_cols=106 Identities=9% Similarity=0.071 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcC--CCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELD--DED----ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDF 321 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 321 (525)
..+.....++.++...|++.+|...+..+.... ..+ .+.+.....++...+++..|...++++....-......
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 355666788999999999999999999976431 111 46778889999999999999999999754222222223
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
...+..+...|.++...++ |.+|..+|..++.
T Consensus 215 ~lk~~~~~~~~~~~~~e~~----y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKRE----YLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHh
Confidence 3347788888888888888 9999999998886
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.66 E-value=0.16 Score=46.54 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 425 TYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 425 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
+...++..+...|++.+|+..+..++..+|-+-.++..+..++...|+..+|+..|+++-+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445777788999999999999999999999999999999999999999999999988744
No 247
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.43 E-value=0.085 Score=49.70 Aligned_cols=70 Identities=13% Similarity=0.033 Sum_probs=59.6
Q ss_pred HhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009799 367 KLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKL 436 (525)
Q Consensus 367 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 436 (525)
....+..|..+|.++....|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+.+.
T Consensus 164 Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 3345578999999999999999999999999999999999999999999887777888888888877653
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.12 Score=48.13 Aligned_cols=103 Identities=10% Similarity=-0.076 Sum_probs=81.6
Q ss_pred CCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHHhcC--CCCH---
Q 009799 386 PKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK---DPRTYSNRAACYTKLGAMPEGLKDADKCIELD--PTFS--- 457 (525)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~--- 457 (525)
.....++..+|..+...|+++.|.+.|.++...... -...+....+++...+++..+..++.++.... ..++
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 334567889999999999999999999998876443 25788889999999999999999999987652 1222
Q ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Q 009799 458 -KGYTRKGAIQFFLKEYDKALETYQEGLKHDP 488 (525)
Q Consensus 458 -~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 488 (525)
......|.++...++|.+|...|-.++.-..
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 2445667778889999999999988876543
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.62 Score=36.55 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=58.2
Q ss_pred hchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 009799 368 LNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDAD 447 (525)
Q Consensus 368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 447 (525)
.|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-. +..+..+|...|+.+.-...-+
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHH
Confidence 45555555554432 4577889999999999999999998887522 2234445555666554444444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 448 KCIELDPTFSKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 448 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
.+..... +.....+++.+|+++++++.|.+.
T Consensus 85 iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 85 IAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 3333221 122234556677777777777554
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.45 Score=37.31 Aligned_cols=49 Identities=10% Similarity=0.006 Sum_probs=41.4
Q ss_pred HHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 009799 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAV 311 (525)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 311 (525)
......|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3456789999999987765 678899999999999999999999998863
No 251
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=1 Score=42.24 Aligned_cols=204 Identities=13% Similarity=0.048 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhh-----------cCCCCHHHHHHHHHHHHHhcCHHHHH----------HHHHHHH
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALE-----------LDDEDISYLTNRAAVYLEMGKYEECI----------KDCDKAV 311 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~~~~~~A~----------~~~~~~l 311 (525)
+...-..++..+++++|..+-..++. +++-...+|+..+.++...|+..... ..+-.++
T Consensus 139 ~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~ 218 (523)
T 4b4t_S 139 HLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFL 218 (523)
T ss_dssp ----------------------------------------------------------------CHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHH
Confidence 33344456678899999888776651 13445677888888888777766532 2222333
Q ss_pred Hccc--cChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcH
Q 009799 312 ERGR--ELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIA 389 (525)
Q Consensus 312 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 389 (525)
.... .+... .+.++..+-..|...+. ++.|..+..++.- |.... .+....
T Consensus 219 rta~lr~D~~~---qa~l~nllLRnYL~~~~----y~qA~~lvsk~~f--P~~~~-------------------sn~q~~ 270 (523)
T 4b4t_S 219 KIASLKHDNET---KAMLINLILRDFLNNGE----VDSASDFISKLEY--PHTDV-------------------SSSLEA 270 (523)
T ss_dssp HHCCSCSSSCH---HHHHHHHHHHHHHHSSC----STTHHHHHHHHCS--CTTTS-------------------CHHHHH
T ss_pred HHHhcccCcch---hHHHHHHHHHHHHccCc----HHHHHHHHhcCcC--CcccC-------------------CHHHHH
Confidence 2111 11122 25666677777777777 9999999888742 21100 111235
Q ss_pred HHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCC---HHH
Q 009799 390 DEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDP-------RTYSNRAACYTKLGAMPEGLKDADKCIELDPTF---SKG 459 (525)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 459 (525)
..++.+|.++.-+++|.+|.+++..|+...|.+. .++-.+..+-.-+|+..+-.- | ..|.. ...
T Consensus 271 rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~l-f-----~q~~l~~~L~p 344 (523)
T 4b4t_S 271 RYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSF-F-----HQSNMQKSLLP 344 (523)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHH-H-----TTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHH-h-----hchhHHHHHHH
Confidence 5677899999999999999999999999887643 222233344444677654211 1 11222 234
Q ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHhccCCCCH
Q 009799 460 YTRKGAIQFFLKE---YDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 460 ~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 491 (525)
|+.++.++ +.|+ +..+++-++..+..+-...
T Consensus 345 Y~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~Dgty~ 378 (523)
T 4b4t_S 345 YYHLTKAV-KLGDLKKFTSTITKYKQLLLKDDTYQ 378 (523)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHTHHHHHHTTCTH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHhcceeccCChhH
Confidence 66666665 4455 4455555566666665443
No 252
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.077 Score=49.52 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=60.7
Q ss_pred cCCCcHHHHHHhhhHHHhcCChhHHH----------HHHHHHHh-----cCCC-CHHHHHHHHHHHHHcCCchHHHHHHH
Q 009799 384 FDPKIADEEREKGNEFFKQQKYPEAI----------QHYTESLR-----RNPK-DPRTYSNRAACYTKLGAMPEGLKDAD 447 (525)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~----------~~~~~al~-----~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 447 (525)
.++-.+.+|+..+.++...|+..... ..+-.++. .++. ...+++.+-+.|...+.|+.|..+..
T Consensus 176 lD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvs 255 (523)
T 4b4t_S 176 LNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFIS 255 (523)
T ss_dssp ---------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHh
Confidence 34556777888888888777765432 12222222 2222 25678889999999999999999999
Q ss_pred HHHhcCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH
Q 009799 448 KCIELDPTF-------SKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQNQ 491 (525)
Q Consensus 448 ~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 491 (525)
++. .|.. ...++.+|.++...++|.+|.+++..|+...|.+.
T Consensus 256 k~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 256 KLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred cCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 985 3432 45678899999999999999999999999888653
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.60 E-value=0.49 Score=48.34 Aligned_cols=97 Identities=8% Similarity=-0.088 Sum_probs=61.5
Q ss_pred HHHHHHhhhHHHhcCChhHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc--CCCCHHHHHH
Q 009799 389 ADEEREKGNEFFKQQKYPEAIQHYTESLRR----NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL--DPTFSKGYTR 462 (525)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 462 (525)
...+..+-..|.+.|+.++|..+|...-+. ..-+..+|+.+-..|.+.|+.++|.+.|++..+. .| +..+|..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence 345666666777777777777777554321 1225667777777777777777777777776654 34 3556666
Q ss_pred HHHHHHHhcC-HHHHHHHHHHHhcc
Q 009799 463 KGAIQFFLKE-YDKALETYQEGLKH 486 (525)
Q Consensus 463 la~~~~~~g~-~~~A~~~~~~a~~~ 486 (525)
+-.++.+.|+ .++|.+.|++..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 6666666666 35666777766653
No 254
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.025 Score=36.68 Aligned_cols=63 Identities=21% Similarity=0.444 Sum_probs=56.4
Q ss_pred cccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhH-HhhHHHHHHHHHHHHhh
Q 009799 131 PFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNL-YLKDQRVMQALGVLLNV 193 (525)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (525)
.++..|..++.+.++..+|++..++.+..+...++.+..+|.++.. ++.+.++...++.+.++
T Consensus 5 ~~~~~f~~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g~ 68 (71)
T 2llv_A 5 GLTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMGV 68 (71)
T ss_dssp CCHHHHHSSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHTT
T ss_pred hHhhhccChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHcC
Confidence 4555666788889999999999999999999999999999999999 99999999999988754
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.44 E-value=0.36 Score=44.88 Aligned_cols=106 Identities=11% Similarity=0.036 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCChhH
Q 009799 285 SYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDT 364 (525)
Q Consensus 285 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 364 (525)
.++..+|..|...|++++|.+.|.++.......... ...+...-.++...++ +..+...+.++.......
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k----id~~l~~irl~l~~~d----~~~~~~~~~ka~~~~~~~-- 201 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK----IDVMLTIARLGFFYND----QLYVKEKLEAVNSMIEKG-- 201 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH----HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH----HHHHHHHHHHHHHhcc----HHHHHHHHHHHHHhhhcC--
Confidence 355566666666666666666666665543332111 3444444445555555 666666666554321110
Q ss_pred HHHhchHHHHHHHHHHHhhcCCC-cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcC
Q 009799 365 LKKLNEAEKAKKELEQQEIFDPK-IADEEREKGNEFFKQQKYPEAIQHYTESLRRN 419 (525)
Q Consensus 365 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 419 (525)
.+|. ........|.++...++|..|...|-.++...
T Consensus 202 -------------------~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 202 -------------------GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp -------------------CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred -------------------CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 0010 11223344566666777777777776665543
No 256
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.20 E-value=0.46 Score=48.59 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=39.3
Q ss_pred HHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 259 AAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKA 310 (525)
Q Consensus 259 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 310 (525)
.....|+++.|.+..+ ..++...|..+|..+...++++.|+.+|.++
T Consensus 661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4566788888887754 3367899999999999999999999999986
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.08 E-value=7 Score=38.10 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcc--cHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009799 3 DEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH--NYADALADAKKTVELKPDWSKGYSRLGAAH 80 (525)
Q Consensus 3 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (525)
+..+..+...+..|++..+...-.. +.-.|- ..+..........+ ... .+...+..+|+.+..-.......
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL--~~yl~y~~l~~~l~~~~~~----ev~~Fl~~~~~~p~~~~Lr~~~l 79 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPL--YPYLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRFV 79 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTT--HHHHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh-hcCCCc--HHHHHHHHHHhCcccCCHH----HHHHHHHHCCCChhHHHHHHHHH
Confidence 3567888999999999877766443 334443 22223333333333 333 44445666888877665555554
Q ss_pred hhh---hhHHHHHHHHHHhhccCCCcHHHHhhHHhHHHHHhh
Q 009799 81 LGL---QDYIEAVNSYKKGLDIDPNNEALKSGLADAKAAASA 119 (525)
Q Consensus 81 ~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 119 (525)
..+ +++..-+..|.. .|.+..............|+
T Consensus 80 ~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~ 117 (618)
T 1qsa_A 80 NELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQ 117 (618)
T ss_dssp HHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCC
Confidence 444 456555554433 37777766666666655554
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.02 E-value=7.1 Score=38.04 Aligned_cols=78 Identities=15% Similarity=0.025 Sum_probs=45.0
Q ss_pred HHHHHhccCCchhHHHHHHHHHH---hhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccC
Q 009799 24 HFTEAISLSPDNHVLYSNRSAAH---ASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDID 100 (525)
Q Consensus 24 ~~~~al~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 100 (525)
.+...+...|+.+..-....... .+.+++..-+.++.. .|.+.......+......|+-.+|......+-...
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 34444555666664444433333 234566655554433 37777777777777777888777777666665444
Q ss_pred CCcHH
Q 009799 101 PNNEA 105 (525)
Q Consensus 101 p~~~~ 105 (525)
...+.
T Consensus 133 ~~~p~ 137 (618)
T 1qsa_A 133 KSQPN 137 (618)
T ss_dssp SCCCT
T ss_pred CCCcH
Confidence 33333
No 259
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.76 E-value=4.2 Score=41.82 Aligned_cols=105 Identities=5% Similarity=-0.062 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcc--ccChhhH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALEL----DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG--RELRSDF 321 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~ 321 (525)
.....+..+-..+.+.|+.++|..+|.+..+. ..-+...|..+...|.+.|+.++|.++|++..... |+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD----- 199 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD----- 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-----
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-----
Confidence 45567888889999999999999999776432 33467899999999999999999999999998753 43
Q ss_pred HHHHHHHHHhhhhHHHhhhcccch-HHHHHHHHHHHhcCCChhH
Q 009799 322 KMIARALTRKGTALVKMAKCSKDY-EPAIETFQKALTEHRNPDT 364 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 364 (525)
...|..+-.++.+.|+ . ++|..+|+++....-.++.
T Consensus 200 ---vvTYntLI~glcK~G~----~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 200 ---LLSYAAALQCMGRQDQ----DAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp ---HHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHTCCSHH
T ss_pred ---HHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCCCCh
Confidence 3445544455566554 5 6888999999987655543
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.64 E-value=12 Score=39.81 Aligned_cols=56 Identities=9% Similarity=0.002 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 009799 39 YSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLD 98 (525)
Q Consensus 39 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 98 (525)
...+...+...|.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 3345556677777766554 3345677777889999999999999999999998753
No 261
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.61 E-value=2.1e-05 Score=71.35 Aligned_cols=265 Identities=15% Similarity=0.156 Sum_probs=157.4
Q ss_pred chhHHHHHHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCCcHHHHhhHHhH
Q 009799 34 DNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEALKSGLADA 113 (525)
Q Consensus 34 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 113 (525)
+.+.+|..+|.+++..++..+|++.|-++ +++..+.....+..+.|.+++=+.+++-+-+. -..+..-..|..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 45789999999999999999999988654 33444555666677889999988888877654 3333444455555
Q ss_pred HHHHhhcccCCCCCCCCcccccccCchhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhh
Q 009799 114 KAAASASFRSRSPPADNPFGSAFAGPEMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNV 193 (525)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (525)
|.+.++... +..
T Consensus 126 yAk~~rL~e---------lEe----------------------------------------------------------- 137 (624)
T 3lvg_A 126 LAKTNRLAE---------LEE----------------------------------------------------------- 137 (624)
T ss_dssp HHTSCSSST---------TTS-----------------------------------------------------------
T ss_pred HHhhCcHHH---------HHH-----------------------------------------------------------
Confidence 555544311 000
Q ss_pred hccCCCCCCccccccccCCCCCCCchhhccCCCCCCCCCChhhhHHHHHHHHhHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 009799 194 KFKGPTGGDDVEMQDEDAPKGPETSKEETRKPESEPEPEPMELTEEEKEAKERKEKALKEKEAGNAAYKKKEFEKAIEHY 273 (525)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 273 (525)
+...|.. .-....|.-++..|.|+.|.-+|
T Consensus 138 -----------------fl~~~N~---------------------------------A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 138 -----------------FINGPNN---------------------------------AHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp -----------------TTSCCSS---------------------------------SCTHHHHHHHHHSCCSTTSSTTG
T ss_pred -----------------HHcCCCc---------------------------------ccHHHHHHHHHHccCHHHHHHHH
Confidence 0001110 00124578888888888887776
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 009799 274 SSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQ 353 (525)
Q Consensus 274 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 353 (525)
..+- -|..||.++..+|+|..|++.-+++ +++..|..+..+ +...++ +.-|..+--
T Consensus 168 s~is--------N~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~A-------Cvd~~E----frLAqicGL 223 (624)
T 3lvg_A 168 NNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA-------CVDGKE----FRLAQMCGL 223 (624)
T ss_dssp GGSC--------CCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHH-------HHHSCT----TTTTTHHHH
T ss_pred HhCc--------cHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHH-------HhCchH----HHHHHHhcc
Confidence 6431 2345677888888888888776654 233344433333 333333 555444433
Q ss_pred HHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 354 KALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACY 433 (525)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 433 (525)
..+- .|+.. -.+...|...|-+++-+..++.++.+..-+...+..||.+|
T Consensus 224 niIv---------------------------hadeL---~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILY 273 (624)
T 3lvg_A 224 HIVV---------------------------HADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHC---------------------------CSSCC---SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHH
T ss_pred hhcc---------------------------cHHHH---HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3332 22111 12344566777778878888888777777777777777777
Q ss_pred HHcCCchHHHHHHHHHHhc--CCC------CHHHHHHHHHHHHHhcCHHHHH
Q 009799 434 TKLGAMPEGLKDADKCIEL--DPT------FSKGYTRKGAIQFFLKEYDKAL 477 (525)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~--~p~------~~~~~~~la~~~~~~g~~~~A~ 477 (525)
.+- ++++-.++++.-... -|. ....|-.+..+|..-.+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 654 355555555432111 122 2345666777777777777665
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.11 E-value=5.8 Score=34.85 Aligned_cols=134 Identities=8% Similarity=0.056 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHH-------H---------HhcCCCCHHHHHHHHHH-HHH
Q 009799 373 KAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTE-------S---------LRRNPKDPRTYSNRAAC-YTK 435 (525)
Q Consensus 373 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------a---------l~~~~~~~~~~~~la~~-~~~ 435 (525)
+|++.-.+.-...-.+++.+..+|..+.+.+++.+|..+|-- . .+..|.....+...|.+ |..
T Consensus 120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~ 199 (336)
T 3lpz_A 120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLL 199 (336)
T ss_dssp HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 344444432223457889999999999999999999877621 0 01123344555555554 778
Q ss_pred cCCchHHHHHHHHHHh----cCC------------------CCHHH-HHHHHHHHHHhcC---HHHHHHHHHHHhccCC-
Q 009799 436 LGAMPEGLKDADKCIE----LDP------------------TFSKG-YTRKGAIQFFLKE---YDKALETYQEGLKHDP- 488 (525)
Q Consensus 436 ~~~~~~A~~~~~~al~----~~p------------------~~~~~-~~~la~~~~~~g~---~~~A~~~~~~a~~~~p- 488 (525)
.++...|...+....+ .+| ..|.. +..+-.+-...+. +..-.+.|+..++.+|
T Consensus 200 l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~ 279 (336)
T 3lpz_A 200 VANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNG 279 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTT
T ss_pred hCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHH
Confidence 8999999886655443 223 23321 1222223333443 4455667777788888
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 009799 489 QNQELLDGVRRCVQQINK 506 (525)
Q Consensus 489 ~~~~~~~~l~~~~~~~~~ 506 (525)
.-...+..++..+..+..
T Consensus 280 ~~~~~L~~IG~~YFgi~~ 297 (336)
T 3lpz_A 280 IWDTALELIAEMYFGIQR 297 (336)
T ss_dssp TTHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 788899999999887754
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.99 E-value=5.8 Score=34.58 Aligned_cols=77 Identities=9% Similarity=0.023 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHH---------------H-h---cCCCCHHHHHHHHH-HH
Q 009799 374 AKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTES---------------L-R---RNPKDPRTYSNRAA-CY 433 (525)
Q Consensus 374 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------l-~---~~~~~~~~~~~la~-~~ 433 (525)
|++.-.+.-...-.++..+..+|..+...|++.+|..+|-.. . + -.|.....+...+. .|
T Consensus 119 ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~y 198 (312)
T 2wpv_A 119 MNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNY 198 (312)
T ss_dssp HHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 444433332234468999999999999999999999877311 0 1 12333445545544 36
Q ss_pred HHcCCchHHHHHHHHHH
Q 009799 434 TKLGAMPEGLKDADKCI 450 (525)
Q Consensus 434 ~~~~~~~~A~~~~~~al 450 (525)
...|+...|...+....
T Consensus 199 L~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 199 LFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTBHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 78899998888877654
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.93 E-value=4.8 Score=42.86 Aligned_cols=61 Identities=8% Similarity=0.024 Sum_probs=42.9
Q ss_pred cHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHcCCchHHHHHHHH
Q 009799 388 IADEEREKGNEFFKQQKYPEAIQHYTESLRRNPK-DP----RTYSNRAACYTKLGAMPEGLKDADK 448 (525)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~----~~~~~la~~~~~~~~~~~A~~~~~~ 448 (525)
.+..|..+..++...+.++.+++..+.|++..+. +. ..|.++=..+...|+|++|...+..
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 3455666677777788888888888888876543 22 2566777778888888888776644
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.67 E-value=31 Score=35.39 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 009799 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVE 312 (525)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 312 (525)
.+-+.+|.++...|+-+-....+..+.+...++..-...+|..+...|+.+.+-...+....
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~ 552 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA 552 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh
Confidence 34456777888888876666666666554333222233344445566777766666665544
No 266
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=86.62 E-value=0.32 Score=30.48 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=48.7
Q ss_pred hhhhhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHhhh
Q 009799 140 EMWAKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLNVK 194 (525)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (525)
+.+.++..+|++...+.+..+......+..+|.....|+.+.++...++.+.++.
T Consensus 3 e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~ 57 (62)
T 2lnm_A 3 EVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLF 57 (62)
T ss_dssp HHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHh
Confidence 4567778888899999999999999999999999999999999999998887654
No 267
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=84.19 E-value=2.9 Score=26.98 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 009799 461 TRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRR 499 (525)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 499 (525)
..+|..+...|++++|..+|-+|+...|+-.+....+.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 457777777888888888888888887776665555443
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.24 E-value=17 Score=37.75 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=72.5
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc-C-------------------
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL-D------------------- 453 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~------------------- 453 (525)
.+...+...|.++-| ...+...|.++..-+.+|.++...|++++|..+|++|-.- .
T Consensus 815 ~l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 815 ELVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 355666777777654 3456778888888899999999999999999999986421 1
Q ss_pred -CC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc-CCCCHH
Q 009799 454 -PT--FSKGYTRKGAIQFFLKEYDKALETYQEGLKH-DPQNQE 492 (525)
Q Consensus 454 -p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~~ 492 (525)
+. ....|.....++...+-++-+++.-+.|++. .++++.
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 01 1236778888999999999999999999974 556655
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=78.90 E-value=15 Score=27.30 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=48.4
Q ss_pred HHHHhcccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcc
Q 009799 258 NAAYKKKEFEKAIEHYSSALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERG 314 (525)
Q Consensus 258 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 314 (525)
.....+|+-++-.+.+...+...+-++..+..+|.+|.+.|+..+|-+.+.++.+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 355678888888888888777778889999999999999999999999999998854
No 270
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=78.39 E-value=6.9 Score=25.94 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISL 31 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~ 31 (525)
.+...|..+++.++|.+|...|+++...
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 4556666666667777777776666543
No 271
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=78.34 E-value=0.00037 Score=63.50 Aligned_cols=117 Identities=9% Similarity=0.036 Sum_probs=74.7
Q ss_pred CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009799 387 KIADEEREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI 466 (525)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 466 (525)
+++.+|-.....+...+++.-|..+--..+- .|+. +-.+...|...|-+++-+..++.++.+...+...+..||.+
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4566777777888888888877766555443 3322 12344557788999999999999999888888899999988
Q ss_pred HHHhcCHHHHHHHHHHHhc-cC-C------CCHHHHHHHHHHHHHhhhhc
Q 009799 467 QFFLKEYDKALETYQEGLK-HD-P------QNQELLDGVRRCVQQINKAG 508 (525)
Q Consensus 467 ~~~~g~~~~A~~~~~~a~~-~~-p------~~~~~~~~l~~~~~~~~~~~ 508 (525)
|.+- +.++-.++++.... ++ | +....|..+.-++....+++
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence 8764 34444444443222 11 2 22344555555555554444
No 272
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=78.07 E-value=5.3 Score=25.74 Aligned_cols=28 Identities=36% Similarity=0.635 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCc
Q 009799 7 AKGNAAFSSGDYEAAVRHFTEAISLSPD 34 (525)
Q Consensus 7 ~~g~~~~~~g~~~~A~~~~~~al~~~p~ 34 (525)
.+|..+...|++++|...|-+|+...|+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4455555555555555555555555444
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.67 E-value=39 Score=29.71 Aligned_cols=19 Identities=11% Similarity=-0.071 Sum_probs=13.4
Q ss_pred HHHhcccHHHHHHHHHHHh
Q 009799 259 AAYKKKEFEKAIEHYSSAL 277 (525)
Q Consensus 259 ~~~~~~~~~~A~~~~~~~l 277 (525)
.|...++...|...+....
T Consensus 196 ~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 4677888888887655544
No 274
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.70 E-value=77 Score=32.61 Aligned_cols=243 Identities=11% Similarity=0.004 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcccc---ChhhH
Q 009799 250 ALKEKEAGNAAYKKKEFEKAIEHYSSALELD-DED----ISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE---LRSDF 321 (525)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~ 321 (525)
..+...+|.+ ..|+.++++..+.+.+... .++ ..+.+.+|.++...+ .+++..+...+..... .....
T Consensus 376 ~sA~aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~ 451 (963)
T 4ady_A 376 FTATASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVD 451 (963)
T ss_dssp HHHHHHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHH
T ss_pred HHHHHHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccH
Confidence 3444445544 4577778888888776532 222 345666777766555 4688888887764320 10011
Q ss_pred HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHhcCCCh---hHHHHh-------chHHHHHHHHHHHhhcCCCcHHH
Q 009799 322 KMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNP---DTLKKL-------NEAEKAKKELEQQEIFDPKIADE 391 (525)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~ 391 (525)
....-+-..+|.++.-.++ +++...+...+...... .....+ ++.+-....+..+.+...+...-
T Consensus 452 ~ir~gAaLGLGla~~GS~~-----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR 526 (963)
T 4ady_A 452 VLLHGASLGIGLAAMGSAN-----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITR 526 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCC-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHH
Confidence 1112345566766654443 56677777776633210 011111 22222222333333332222222
Q ss_pred HHHhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009799 392 EREKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTY----SNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQ 467 (525)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 467 (525)
...+|..+...|+.+.+....+..... .++.+. ..+|..|...|+...-...+..+.....++..-...+|..+
T Consensus 527 ~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGl 604 (963)
T 4ady_A 527 GLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGF 604 (963)
T ss_dssp HHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHh
Confidence 333444445566666555555544432 233322 34555666777743333355555543222333223333333
Q ss_pred HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009799 468 FFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQIN 505 (525)
Q Consensus 468 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 505 (525)
...|+.+.+...+....+ -.++.++...+.++..++
T Consensus 605 I~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 605 VLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp HTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhc
Confidence 344554333333332222 235667776666666654
No 275
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=74.69 E-value=16 Score=28.05 Aligned_cols=60 Identities=10% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCch---hHHHHH------HHHHHhhcccHHHHHHHHHHhhc
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAISLSPDN---HVLYSN------RSAAHASLHNYADALADAKKTVE 64 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~------la~~~~~~g~~~~A~~~~~~al~ 64 (525)
-+..|..+|..|+|-+|-+.++.+-...+.. ...|.. .|....+.|+...|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567778888888888888888887765432 122222 22234556777777777776654
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=73.58 E-value=4.2 Score=27.14 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAI 29 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al 29 (525)
+..+|...-..|+|++|+.+|.+++
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 277
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=71.27 E-value=5.1 Score=26.77 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAI 29 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al 29 (525)
+..+|...-..|+|++|+.+|..++
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444444555555555444443
No 278
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=70.47 E-value=5.4 Score=27.26 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Q 009799 462 RKGAIQFFLKEYDKALETYQEGLKHDPQNQE 492 (525)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 492 (525)
.+|..+...|+++.|+.+|-+|+...|+-..
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 3455555555555555555555555554333
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.70 E-value=1.1e+02 Score=31.81 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=43.1
Q ss_pred HHHHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 009799 41 NRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGL 97 (525)
Q Consensus 41 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 97 (525)
.+...+...|.++-|. ..+...|.++..-+.+|+++...|++++|..+|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3566677778777543 4567778888888999999999999999999999875
No 280
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=69.29 E-value=15 Score=34.08 Aligned_cols=62 Identities=5% Similarity=-0.014 Sum_probs=37.3
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCC--C--------CHHHHHHHHHHHHHcCCchHHHHHHHHHHhc-CCC
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNP--K--------DPRTYSNRAACYTKLGAMPEGLKDADKCIEL-DPT 455 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~--~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~ 455 (525)
.+-.+|++.++..-+...++..-...+ . -...++.+|.++...++|.+|.+.+..|+.. .|.
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 344667777777777776654432211 1 1245566777777777777777777777666 554
No 281
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=69.29 E-value=32 Score=25.54 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=35.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhc
Q 009799 398 EFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIEL 452 (525)
Q Consensus 398 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 452 (525)
.+..+|+-++-.+.+...+...+-+|..+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3455666666666666655555556777777777777777777777777766553
No 282
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=68.92 E-value=42 Score=29.51 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=37.8
Q ss_pred CcHHHHHHhhhHHHhc--CChhHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHh
Q 009799 387 KIADEEREKGNEFFKQ--QKYPEAIQHYTESLRR-----NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIE 451 (525)
Q Consensus 387 ~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (525)
..|-++.++|.+--.. .....++.+|.+++.. ...+...|..+|-.+.+.+++.+|+..+-.+-.
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 4566666666654322 2223366777776643 223445566667777777777777777766543
No 283
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=66.98 E-value=26 Score=23.51 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (525)
.+..+|...-..|+|++|+.+|..+++
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667777777777777777776654
No 284
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.32 E-value=8.8 Score=25.81 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEA 28 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~a 28 (525)
+-.++..+...|+|++||.+.+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 345566666666666666665554
No 285
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=65.93 E-value=7.5 Score=38.35 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcc
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH 50 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 50 (525)
....+|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555444
No 286
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=65.75 E-value=18 Score=29.19 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCCCH
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELDDEDI 284 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 284 (525)
..+...+.+|.+++..++|.+|...+..|+...|...
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 5667788889999999999999999999998888654
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.78 E-value=47 Score=26.60 Aligned_cols=69 Identities=13% Similarity=0.021 Sum_probs=48.7
Q ss_pred CCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCC
Q 009799 385 DPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR--NPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDP 454 (525)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 454 (525)
+|....+|...+..+ ..+...++..+|.-.... ....+..|...|..+...|++.+|...|+..++..-
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 445556666666655 233466777777776643 445677788888888888888888888888887653
No 288
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=60.94 E-value=10 Score=25.36 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAI 29 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al 29 (525)
+..+|...-..|+|++|+.+|..++
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444455555544444443
No 289
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=60.71 E-value=69 Score=28.88 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=37.4
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcc------CCCCHHHHHHHHHH
Q 009799 442 GLKDADKCIEL-----DPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKH------DPQNQELLDGVRRC 500 (525)
Q Consensus 442 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~ 500 (525)
++..|.+++.. ...+...|..+|..+++.+++.+|+.++-.+-.. ..++.+++..+-.+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 55555555543 3345666777888888888888888887766432 34556666554444
No 290
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=59.34 E-value=1e+02 Score=27.86 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009799 457 SKGYTRKGAIQFFLKEYDKALETYQEG 483 (525)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (525)
...|..+|-.+.+.+++.+|+.++-.+
T Consensus 303 vYPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 303 IYPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccceeecchHHHHhhhHHHHHHHhhhh
Confidence 444555555555555555555555554
No 291
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=59.32 E-value=11 Score=25.84 Aligned_cols=26 Identities=4% Similarity=0.091 Sum_probs=13.3
Q ss_pred HHHHHhhcccHHHHHHHHHHhhccCC
Q 009799 42 RSAAHASLHNYADALADAKKTVELKP 67 (525)
Q Consensus 42 la~~~~~~g~~~~A~~~~~~al~~~p 67 (525)
+|..+...|+++.|+..|-+|+...|
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 45555555555555555555555444
No 292
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=58.04 E-value=9.1 Score=25.07 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009799 5 AKAKGNAAFSSGDYEAAVRHFTEAIS 30 (525)
Q Consensus 5 ~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (525)
...+|+.+-..|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34667777777777777777777765
No 293
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=57.69 E-value=22 Score=28.68 Aligned_cols=52 Identities=6% Similarity=-0.204 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHhcCHH
Q 009799 423 PRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSK-----GYTRKGAIQFFLKEYD 474 (525)
Q Consensus 423 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~ 474 (525)
....+.+|.+++..++|.+|.+.+..|+...|.... ++..+--+-..+|+..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 356678888888888888898888888888776543 2233333334566643
No 294
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=56.57 E-value=44 Score=22.76 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAIS 30 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 30 (525)
.+..+|...-..|+|++|+.+|..+++
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555556666666655555443
No 295
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=56.08 E-value=26 Score=34.49 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 009799 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINK 506 (525)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 506 (525)
....|...+..|+|.-|.+....++..+|+|.++...++.++.++|.
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555555554
No 296
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=53.67 E-value=1.1e+02 Score=26.56 Aligned_cols=64 Identities=11% Similarity=-0.015 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHH----------------h---cCCCCHHHHHHHHH-HHHHhcCHHHHHHHH
Q 009799 421 KDPRTYSNRAACYTKLGAMPEGLKDADKCI----------------E---LDPTFSKGYTRKGA-IQFFLKEYDKALETY 480 (525)
Q Consensus 421 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al----------------~---~~p~~~~~~~~la~-~~~~~g~~~~A~~~~ 480 (525)
.+|..+..+|..+...|++.+|..+|-..- + -.|...+.+...+. .|...|+...|...|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESK 211 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 578999999999999999999999874210 1 12333455555554 456789999999888
Q ss_pred HHHh
Q 009799 481 QEGL 484 (525)
Q Consensus 481 ~~a~ 484 (525)
....
T Consensus 212 ~~f~ 215 (312)
T 2wpv_A 212 DIFL 215 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 297
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=53.09 E-value=13 Score=26.72 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHh
Q 009799 18 YEAAVRHFTEAI 29 (525)
Q Consensus 18 ~~~A~~~~~~al 29 (525)
.+.|+.++.+|+
T Consensus 15 l~kAi~lv~~Av 26 (117)
T 2cpt_A 15 LQKAIDLASKAA 26 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345566666654
No 298
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=52.57 E-value=76 Score=24.31 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCCC---HHHH---HH---HHHHHHHhcCHHHHHHHHHHHHHcc
Q 009799 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDED---ISYL---TN---RAAVYLEMGKYEECIKDCDKAVERG 314 (525)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~---~~---la~~~~~~~~~~~A~~~~~~~l~~~ 314 (525)
.-+..|..++..|+|=+|-+.++.+-...+.. ...+ .. .|..+.+.|+..-|...+.+++..-
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34667888899999999999999999887654 2222 22 3445667899999999999998743
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=51.37 E-value=21 Score=23.41 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 009799 427 SNRAACYTKLGAMPEGLKDADKCIE 451 (525)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~ 451 (525)
..+|+-|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566777777777777777776664
No 300
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=49.88 E-value=36 Score=31.56 Aligned_cols=59 Identities=5% Similarity=0.055 Sum_probs=45.1
Q ss_pred HHHHhchHHHHHHHHHHHhhcCC----------CcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc-CCCC
Q 009799 364 TLKKLNEAEKAKKELEQQEIFDP----------KIADEEREKGNEFFKQQKYPEAIQHYTESLRR-NPKD 422 (525)
Q Consensus 364 ~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~ 422 (525)
++.++++...+...++..-...+ ......+.+|.++...++|.+|.+.+..|+.. .|.+
T Consensus 185 iYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 185 IYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 67777877777777765543322 22456788999999999999999999999998 7754
No 301
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=48.19 E-value=41 Score=23.00 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCc
Q 009799 6 KAKGNAAFSSGDYEAAVRHFTEAISLSPD 34 (525)
Q Consensus 6 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 34 (525)
+..|..++..|+|=+|-+.++.+-...|.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 45677788888888888888877766654
No 302
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=47.90 E-value=17 Score=24.40 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHF 25 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~ 25 (525)
|..|+.-|..++..|++..|+.++
T Consensus 39 A~~Y~~Da~~fl~kGD~v~Ala~i 62 (87)
T 2pmr_A 39 ALNYRDDSVYYLEKGDHITSFGCI 62 (87)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444444455555554444443
No 303
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=46.99 E-value=18 Score=24.18 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=19.2
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHH
Q 009799 1 MADEAKAKGNAAFSSGDYEAAVRHFTE 27 (525)
Q Consensus 1 ~a~~~~~~g~~~~~~g~~~~A~~~~~~ 27 (525)
||..|+.-|..++..|++..|+.++.=
T Consensus 34 mA~~Y~~Da~~fl~kGD~v~Ala~isY 60 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFECVVW 60 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466777777777777777777776543
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.50 E-value=62 Score=26.39 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChhHHHHhchHHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHH--hcCCCCHHHH
Q 009799 349 IETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEIFDPKIADEEREKGNEFFKQQKYPEAIQHYTESL--RRNPKDPRTY 426 (525)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~ 426 (525)
..++++++....+...+. .+|....+|...+... +.+..+|.-.. .+....+..|
T Consensus 97 ~~lLErc~~~F~~~~rYk-----------------nD~RyLklWl~Ya~~~------~~p~~if~~L~~~~IG~~~AlfY 153 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYK-----------------DDVRYLRIWMQYVNYI------DEPVELFSFLAHHHIGQESSIFY 153 (223)
T ss_dssp HHHHHHHHHHTTTCGGGT-----------------TCHHHHHHHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHHH
T ss_pred HHHHHHHHHHhccccccc-----------------CCHHHHHHHHHHHHcc------CCHHHHHHHHHHCCcchhHHHHH
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 009799 427 SNRAACYTKLGAMPEGLKDADKCIE 451 (525)
Q Consensus 427 ~~la~~~~~~~~~~~A~~~~~~al~ 451 (525)
...|..+...|++.+|...|+..++
T Consensus 154 e~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 154 EEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
No 305
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=44.52 E-value=71 Score=21.60 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 320 DFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
...+.+..+.+.+..+...++ |++|+++..++..
T Consensus 10 spLn~AH~~~RrAe~ll~~gk----ydeAIech~kAa~ 43 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGK----YEEAISCHRKATT 43 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCC----HHHHHHHHHHHHH
Confidence 444557888888888888888 9999998888765
No 306
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.15 E-value=48 Score=21.98 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=6.9
Q ss_pred hcCHHHHHHHHHHHHH
Q 009799 297 MGKYEECIKDCDKAVE 312 (525)
Q Consensus 297 ~~~~~~A~~~~~~~l~ 312 (525)
.|++++|+.+|..+++
T Consensus 24 ~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 24 EGKVEDAITYYKKAIE 39 (83)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 3444444444444433
No 307
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=49.15 E-value=5 Score=39.47 Aligned_cols=47 Identities=23% Similarity=0.199 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCchhHHHHHHHHHHhhcc
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLH 50 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 50 (525)
....+|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~ 509 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLG 509 (668)
Confidence 34444555555555555555555555555555555555555554444
No 308
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=42.58 E-value=58 Score=23.68 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCchHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHH
Q 009799 428 NRAACYTKLGAMPEGLKDADKC---IELDPTFSKGYTRKGAIQFFLKEYDKALETYQEGLKHDPQ--NQELLDGVRRCVQ 502 (525)
Q Consensus 428 ~la~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~ 502 (525)
..+.+++..++.+..+..+... ++..|.. ....+....--.+..+|.+++++.....-. -..+|..+..++.
T Consensus 45 eASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT---~~E~sF~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~Vf~ 121 (126)
T 2npu_A 45 EASRLYFGERNVKGMFEVLEPLHAMMERGPQT---LKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFR 121 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHccCCCC---HHHHHHHHHHhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Confidence 3455566677777777776555 3334443 223333333334566777777766533221 1356666666666
Q ss_pred Hhh
Q 009799 503 QIN 505 (525)
Q Consensus 503 ~~~ 505 (525)
++.
T Consensus 122 rI~ 124 (126)
T 2npu_A 122 RIS 124 (126)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=38.70 E-value=1.5e+02 Score=23.94 Aligned_cols=45 Identities=7% Similarity=0.106 Sum_probs=31.6
Q ss_pred hhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Q 009799 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAM 439 (525)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 439 (525)
...++++.|.|++|.+.+++.+..+|.+......|..+-.+.+-+
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~ 164 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLA 164 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcc
Confidence 345678889999999999998887666555666666655544433
No 310
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.77 E-value=2.3e+02 Score=25.59 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=62.1
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcC-----------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccccCh-
Q 009799 257 GNAAYKKKEFEKAIEHYSSALELD-----------------DEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELR- 318 (525)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~~l~~~-----------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~- 318 (525)
..+.....+.++|+.+++++.... .....+...++..|...|+.++|...++++-..-....
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 334556788999999998874321 01134566788899999999999999998865321110
Q ss_pred hhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 319 SDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
......+..|...+..+...++ +..+....-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~----~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKND----FNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHh
Confidence 1112225666666776666666 7766665555554
No 311
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.64 E-value=3.4e+02 Score=26.65 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=13.1
Q ss_pred HHHHHHHhcccHHHHHHHHHH
Q 009799 255 EAGNAAYKKKEFEKAIEHYSS 275 (525)
Q Consensus 255 ~~~~~~~~~~~~~~A~~~~~~ 275 (525)
..|......|++++|+..|.-
T Consensus 448 ~aA~~ae~~G~~~dAi~LY~L 468 (661)
T 2qx5_A 448 QAARRADEDGRIYDSILLYQL 468 (661)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 345566667777777766554
No 312
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=33.94 E-value=73 Score=21.11 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHh
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSAL 277 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l 277 (525)
+...|.-.-..|++++|+.+|..++
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444555555555554443
No 313
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=33.20 E-value=1.6e+02 Score=22.42 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCc--hhHHHHHHHHHHhhcccHH-HHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPD--NHVLYSNRSAAHASLHNYA-DALADAKKTVELKPDWSKGYSRLGAAH 80 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (525)
.-+..+...|-..+|...+..++.. +|. .....+.+|..|....++. +-.+..-.-+.+.. +-.+.+=+++
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkS---de~yL~YWIy 83 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKT---DEQYMLYWIY 83 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccC---CHHHHHHHHH
Confidence 3456788899999999999887764 443 3478889999998877654 33334433333322 2233344566
Q ss_pred hhhhhHHHHHHHHHHh
Q 009799 81 LGLQDYIEAVNSYKKG 96 (525)
Q Consensus 81 ~~~g~~~~A~~~~~~a 96 (525)
.-.|++++|+..-...
T Consensus 84 iGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 84 IGRSQSEEALELARTI 99 (161)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HcCCchHHHHHHHHhc
Confidence 6689999999887665
No 314
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=33.12 E-value=1.2e+02 Score=21.02 Aligned_cols=82 Identities=10% Similarity=-0.065 Sum_probs=51.2
Q ss_pred hhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q 009799 395 KGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYD 474 (525)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 474 (525)
++.+-.-....++|..+-+ .+...++...+-......+...|+|++|....+.. + .|+.--.++.+-.+.|-.+
T Consensus 13 ~AL~gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s 86 (116)
T 2p58_C 13 IALIGTGNHYHEEANCIAE-WLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKL----A-YPDLEPWLALCEYRLGLGS 86 (116)
T ss_dssp HHHHHHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTS----C-CGGGHHHHHHHHHHHTCHH
T ss_pred HHHHHccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHH
Confidence 3333334455677765544 34445543334445566678889998888776542 2 4566666777888888888
Q ss_pred HHHHHHHH
Q 009799 475 KALETYQE 482 (525)
Q Consensus 475 ~A~~~~~~ 482 (525)
++...+.+
T Consensus 87 ~le~rL~~ 94 (116)
T 2p58_C 87 ALESRLNR 94 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877733
No 315
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=33.02 E-value=1.1e+02 Score=21.04 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009799 2 ADEAKAKGNAAFSSGDYEAAVRHFTEA 28 (525)
Q Consensus 2 a~~~~~~g~~~~~~g~~~~A~~~~~~a 28 (525)
|+..+..+...+..++|..|..+.+++
T Consensus 34 A~dKl~~A~~Am~~~~y~~Ar~lAEqA 60 (98)
T 4fm3_A 34 AQDKYAAAQIAMTAESYKKARLLAEQA 60 (98)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 345566677777777777777777766
No 316
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=32.13 E-value=2.7e+02 Score=25.83 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHh------hcCCCcHHHHHHhhhHHHhcCChhHHHHHHHHHHhc
Q 009799 369 NEAEKAKKELEQQE------IFDPKIADEEREKGNEFFKQQKYPEAIQHYTESLRR 418 (525)
Q Consensus 369 ~~~~~a~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 418 (525)
.++++|+..+.... .-.+....++..+|.+|+..++|++|....++++..
T Consensus 165 ~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 165 DDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 45566665552110 113445678889999999999999999999999853
No 317
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=31.80 E-value=1.2e+02 Score=20.55 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q 009799 346 EPAIETFQKALT 357 (525)
Q Consensus 346 ~~A~~~~~~~~~ 357 (525)
+.|+.++.++++
T Consensus 13 ~~Ai~lv~~Ave 24 (93)
T 1wfd_A 13 TAAVAVLKRAVE 24 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 318
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.60 E-value=2.5e+02 Score=25.34 Aligned_cols=89 Identities=11% Similarity=0.026 Sum_probs=59.4
Q ss_pred hHHHhcCChhHHHHHHHHHHhcC-------C--------CC--HHHHHHHHHHHHHcCCchHHHHHHHHHHhc-------
Q 009799 397 NEFFKQQKYPEAIQHYTESLRRN-------P--------KD--PRTYSNRAACYTKLGAMPEGLKDADKCIEL------- 452 (525)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~al~~~-------~--------~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 452 (525)
.+.....+.++|++.++...... + .. ..+...++..|...|+.+.|...++++-..
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34456678888888887764221 0 01 245567888899999999999999887643
Q ss_pred CCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 009799 453 DPT-FSKGYTRKGAIQFFLKEYDKALETYQEGLK 485 (525)
Q Consensus 453 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (525)
+|. +...+...+..+...+++..+....-..+.
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 121 234555667777788888887776666654
No 319
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=31.40 E-value=1.3e+02 Score=20.84 Aligned_cols=75 Identities=17% Similarity=0.029 Sum_probs=46.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 009799 401 KQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFLKEYDKALETY 480 (525)
Q Consensus 401 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (525)
-....++|..+-+ .+...++...+-......+...|+|++|....+.. + .|+.--.++.+-.+.|-.+++...+
T Consensus 18 G~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 18 GQHCHEEALCIAE-WLERLGQDEAARLIRISSLANQGRYQEALAFAHGN----P-WPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHHHHH
Confidence 3445666655443 34444443334444556677888888887665432 2 4566666777888888888888777
Q ss_pred H
Q 009799 481 Q 481 (525)
Q Consensus 481 ~ 481 (525)
.
T Consensus 92 ~ 92 (115)
T 2uwj_G 92 A 92 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 320
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=30.93 E-value=1.2e+02 Score=20.24 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALELD 280 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 280 (525)
..+.....-|.-++..++|.+|...|+++....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 556666677777778888888888888776543
No 321
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.95 E-value=2.2e+02 Score=23.02 Aligned_cols=62 Identities=16% Similarity=-0.023 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHhcCCCCHHH--------HHHHHHHHHHcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009799 405 YPEAIQHYTESLRRNPKDPRT--------YSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAI 466 (525)
Q Consensus 405 ~~~A~~~~~~al~~~~~~~~~--------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 466 (525)
.+.|+..++..-+-.+-.... -...-.++++.|.|++|.+.+++.+..+|.+......|..+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 466777776665554422211 11223345667777777777777776655544444444433
No 322
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.93 E-value=89 Score=22.38 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=8.0
Q ss_pred HHHHHhcccHHHHHHHHHH
Q 009799 257 GNAAYKKKEFEKAIEHYSS 275 (525)
Q Consensus 257 ~~~~~~~~~~~~A~~~~~~ 275 (525)
|.-.-..|+|++|+.+|..
T Consensus 25 Ave~D~ag~y~eAl~lY~~ 43 (117)
T 2cpt_A 25 AAQEDKAGNYEEALQLYQH 43 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHH
Confidence 3333344444444444443
No 323
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.06 E-value=1.5e+02 Score=20.15 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=32.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHccccChhhHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHh
Q 009799 290 RAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALT 357 (525)
Q Consensus 290 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 357 (525)
.|..++..|+|-+|-+.++......|+ +......+-+....|......|+ . |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn----~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGR----P--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTC----C--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCc----H--HHHHHHHHHH
Confidence 445556667777777777777766643 22222223333333333333333 5 6666666655
No 324
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.47 E-value=62 Score=25.68 Aligned_cols=43 Identities=12% Similarity=-0.120 Sum_probs=23.5
Q ss_pred HHHHhhcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhhhh
Q 009799 43 SAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQD 85 (525)
Q Consensus 43 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 85 (525)
-.++++.|.+++|.+.+++....+|.+......|..+-.+.+-
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 3456777777777777777777766655555555444444433
No 325
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=25.13 E-value=1.5e+02 Score=19.55 Aligned_cols=31 Identities=35% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhh
Q 009799 248 EKALKEKEAGNAAYKKKEFEKAIEHYSSALE 278 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 278 (525)
..+..+...|...-..|++++|+.+|..+++
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555566666677777777777666654
No 326
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=24.99 E-value=1.9e+02 Score=20.97 Aligned_cols=19 Identities=5% Similarity=-0.158 Sum_probs=9.5
Q ss_pred HHHhhcccHHHHHHHHHHh
Q 009799 44 AAHASLHNYADALADAKKT 62 (525)
Q Consensus 44 ~~~~~~g~~~~A~~~~~~a 62 (525)
..++..++.+..+..++..
T Consensus 48 rlyf~~~n~~~m~~~L~pL 66 (126)
T 2npu_A 48 RLYFGERNVKGMFEVLEPL 66 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcccCHHHHHHHHHHH
Confidence 3444555555555555443
No 327
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.87 E-value=3.1e+02 Score=22.76 Aligned_cols=58 Identities=9% Similarity=0.094 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Q 009799 253 EKEAGNAAYKKKEFEKAIEHYSSALELDDE-DISYLTNRAAVYLE-MGKYEECIKDCDKA 310 (525)
Q Consensus 253 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~~~~~~A~~~~~~~ 310 (525)
+..++.+.-+.++|++...+.+++...++. +.+-...++.+|-. .|....+...+...
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissi 66 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSI 66 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 456677788888888888888888887665 33445555555533 34444455554433
No 328
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.65 E-value=70 Score=25.40 Aligned_cols=44 Identities=7% Similarity=-0.012 Sum_probs=27.6
Q ss_pred HhhhHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009799 394 EKGNEFFKQQKYPEAIQHYTESLRRNPKDPRTYSNRAACYTKLG 437 (525)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 437 (525)
....++++.|.+++|.+.+++....++.+......|..+-.+.+
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 34567889999999999999988887766665555555544433
No 329
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=23.50 E-value=73 Score=29.69 Aligned_cols=33 Identities=15% Similarity=0.005 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhcc
Q 009799 67 PDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (525)
Q Consensus 67 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 99 (525)
++...++..+|++|+..|+|++|....++++..
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 444567888888888888888888888888764
No 330
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=23.39 E-value=17 Score=23.28 Aligned_cols=50 Identities=18% Similarity=0.412 Sum_probs=40.9
Q ss_pred hhcccCCCcccccchHHHHHHHHHHhhCCCchhHHhhHHHHHHHHHHHHh
Q 009799 143 AKLTADPTTRSYLDQDDFRNMMKDIQRNPNNLNLYLKDQRVMQALGVLLN 192 (525)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (525)
..+..+|.+...+.++.+..+...+..+|.....|+.++.+...+..+..
T Consensus 14 ~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~ 63 (71)
T 2llw_A 14 QRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIA 63 (71)
T ss_dssp HHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHH
Confidence 34455666666778889999999999999999999999999888887754
No 331
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.25 E-value=3.1e+02 Score=22.53 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHH-hcCHHHHHHHHH
Q 009799 252 KEKEAGNAAYKKKEFEKAIEHYSSALELDDE-DISYLTNRAAVYLE-MGKYEECIKDCD 308 (525)
Q Consensus 252 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~~~~~~A~~~~~ 308 (525)
-+..++.+..+.++|++.+.+.+++...++. +.+-...++.+|-. .|....+...+.
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiis 65 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIIS 65 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3456677788889999999999998887664 34445555555543 233344444443
No 332
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.11 E-value=1.1e+02 Score=21.46 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEA 28 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~a 28 (525)
.+.-.|....+.|+|++|...++++
T Consensus 22 S~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 22 SKLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444555566666666666666655
No 333
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.93 E-value=2.9e+02 Score=22.07 Aligned_cols=71 Identities=6% Similarity=-0.101 Sum_probs=55.1
Q ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcccc
Q 009799 245 ERKEKALKEKEAGNAAYKKKEFEKAIEHYSSALEL--DDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRE 316 (525)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 316 (525)
.++.....|...+..+ ..++..++..+|.-+... ....+..|...|..+...|++.+|..+|+..++....
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4566777777777765 344466788888777654 4556788889999999999999999999999996544
No 334
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.76 E-value=1.1e+02 Score=21.30 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEA 28 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~a 28 (525)
.+.-.|....+.|+|++|...++++
T Consensus 20 s~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 20 SLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555666666666666666655
No 335
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.91 E-value=1.1e+02 Score=28.33 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=34.8
Q ss_pred cccHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHhhcc
Q 009799 49 LHNYADALADAKKTV-ELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (525)
Q Consensus 49 ~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 99 (525)
..+.++|+..+...- .-.++...++..+|++|+..|+|++|+...++++..
T Consensus 168 ~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 168 IETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 345566665442110 112334568889999999999999999999998853
No 336
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=21.43 E-value=1.4e+02 Score=27.91 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHhhhhhHHHHHHHHHHhhcc
Q 009799 68 DWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDI 99 (525)
Q Consensus 68 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 99 (525)
+...++..+|++|+..|+|++|....++++..
T Consensus 200 tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 200 NYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 34567888999999999999999999998864
No 337
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=21.32 E-value=3.7e+02 Score=22.58 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcC--CC-CHHHHHHHHHHHHH-hcCHHHHHHHHHH
Q 009799 251 LKEKEAGNAAYKKKEFEKAIEHYSSALELD--DE-DISYLTNRAAVYLE-MGKYEECIKDCDK 309 (525)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~-~~~~~~A~~~~~~ 309 (525)
.-+..++.+..+.++|++.+.+.+++...+ +. +.+-...+..+|-. .|....+.+.+..
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiiss 71 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 345567888888899999999999998876 43 44455555555533 2444444444444
No 338
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=21.03 E-value=1.9e+02 Score=19.21 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q 009799 249 KALKEKEAGNAAYKKKEFEKAIEHYSSALEL 279 (525)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 279 (525)
.+..+...|.-.-..|+|++|+.+|..+++.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566677777888888888888887753
No 339
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=26.41 E-value=21 Score=35.23 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhc
Q 009799 460 YTRKGAIQFFLKEYDKALETYQEGLKHDPQNQELLDGVRRCVQQINKAG 508 (525)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 508 (525)
....|.-.+..|+|.-|.+....++..+|+|.++...++.++.++|-..
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 3444555556666666666666666666666666666666666666443
No 340
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=20.63 E-value=3e+02 Score=21.75 Aligned_cols=61 Identities=21% Similarity=0.129 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCc-hhHHHHHHHHHHhhcccHHHHHHHHHHhhc
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEAIS-------LSPD-NHVLYSNRSAAHASLHNYADALADAKKTVE 64 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~al~-------~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 64 (525)
..+..++..++.|+...|.+.++-+=. .-|- ...-....+..++..|++.+|-..+..+..
T Consensus 110 aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 110 SAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 456788888999999999888887622 1221 235567788888888888888888777653
No 341
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.51 E-value=1.3e+02 Score=21.23 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009799 4 EAKAKGNAAFSSGDYEAAVRHFTEA 28 (525)
Q Consensus 4 ~~~~~g~~~~~~g~~~~A~~~~~~a 28 (525)
.+.-.|....+.|+|++|...++++
T Consensus 24 s~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 24 SFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555556666666666666555
No 342
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=20.46 E-value=2e+02 Score=26.61 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHh
Q 009799 424 RTYSNRAACYTKLGAMPEGLKDADKCIE 451 (525)
Q Consensus 424 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 451 (525)
.++..+|++|+..|+|++|....++++.
T Consensus 191 aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 191 AARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3455566666666666666666665553
Done!