Query 009800
Match_columns 525
No_of_seqs 241 out of 592
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x3z_A Peptide: N-glycanase; h 100.0 2.5E-84 8.6E-89 659.5 26.1 272 21-296 42-319 (335)
2 2f4m_A Peptide N-glycanase; gl 100.0 3.8E-76 1.3E-80 592.5 29.5 277 20-296 2-281 (295)
3 2qsf_A RAD4, DNA repair protei 100.0 6.1E-35 2.1E-39 313.4 17.0 285 27-355 53-387 (533)
4 3isr_A Transglutaminase-like e 99.5 1.5E-13 5.2E-18 137.9 12.4 98 78-220 143-247 (293)
5 2g9g_A Pngase, peptide N-glyca 99.4 1.2E-16 4.3E-21 155.3 -12.3 132 301-441 16-155 (221)
6 2q3z_A Transglutaminase 2; tra 98.9 1.7E-09 5.8E-14 119.6 6.7 54 154-207 273-363 (687)
7 1vjj_A Protein-glutamine gluta 98.6 2.1E-08 7.2E-13 110.9 6.3 59 148-206 257-357 (692)
8 1ex0_A Coagulation factor XIII 98.6 2.1E-08 7.3E-13 111.3 6.1 58 148-205 300-399 (731)
9 1g0d_A Protein-glutamine gamma 98.6 2.9E-08 1E-12 109.7 6.8 58 148-205 257-358 (695)
10 3kd4_A Putative protease; stru 98.4 6.9E-07 2.4E-11 95.2 10.1 88 78-205 245-345 (506)
11 2i74_A Pngase; beta-sandwich, 97.4 6.4E-07 2.2E-11 85.6 -10.0 101 331-440 7-114 (189)
12 4fgq_A Periplasmic protein; DU 94.6 0.079 2.7E-06 50.8 7.8 110 78-232 44-163 (193)
13 3po3_S Transcription elongatio 92.0 0.19 6.5E-06 47.2 5.6 127 3-141 44-177 (178)
14 1pqv_S STP-alpha, transcriptio 82.1 3.4 0.00012 41.7 8.0 126 4-141 176-308 (309)
15 2ija_A Arylamine N-acetyltrans 71.3 8.8 0.0003 38.1 7.4 66 148-215 62-143 (295)
16 2bsz_A Arylamine N-acetyltrans 69.7 11 0.00038 37.2 7.7 67 148-216 62-143 (278)
17 1e2t_A NAT, N-hydroxyarylamine 69.2 9.4 0.00032 37.7 7.1 67 148-216 61-141 (284)
18 1w4t_A Arylamine N-acetyltrans 65.0 4.1 0.00014 40.8 3.6 67 148-216 82-164 (299)
19 3d9w_A Putative acetyltransfer 64.8 5.5 0.00019 39.7 4.4 67 148-215 71-150 (293)
20 2vfb_A Arylamine N-acetyltrans 64.0 14 0.00049 36.4 7.2 67 148-216 59-143 (280)
21 1w5r_A Arylamine N-acetyltrans 62.9 4.4 0.00015 40.0 3.3 67 148-216 62-146 (278)
22 3lnb_A N-acetyltransferase fam 58.6 6.1 0.00021 39.9 3.5 58 148-207 88-158 (309)
23 1tfi_A Transcriptional elongat 52.6 9.4 0.00032 28.9 2.8 41 96-141 8-49 (50)
24 2akl_A PHNA-like protein PA012 49.5 5.7 0.00019 36.2 1.4 29 96-139 26-54 (138)
25 1l1o_C Replication protein A 7 49.4 14 0.00047 34.2 4.0 73 81-203 29-109 (181)
26 2fiy_A Protein FDHE homolog; F 45.6 12 0.0004 38.0 3.1 15 125-139 249-263 (309)
27 1vk6_A NADH pyrophosphatase; 1 45.1 15 0.00051 36.0 3.7 45 80-145 96-140 (269)
28 2fiy_A Protein FDHE homolog; F 43.1 44 0.0015 33.8 6.8 43 94-145 180-224 (309)
29 1qyp_A RNA polymerase II; tran 41.8 12 0.00041 28.4 2.0 37 98-139 16-53 (57)
30 1dvp_A HRS, hepatocyte growth 38.6 48 0.0016 31.2 6.0 14 93-106 157-170 (220)
31 1dxg_A Desulforedoxin; non-hem 35.4 8.8 0.0003 27.0 0.3 16 125-140 2-17 (36)
32 3zyq_A Hepatocyte growth facto 34.9 82 0.0028 29.9 7.0 76 20-106 86-173 (226)
33 2pjk_A 178AA long hypothetical 34.9 21 0.00073 32.8 2.9 116 348-464 35-177 (178)
34 4esj_A Type-2 restriction enzy 33.4 18 0.00061 36.0 2.1 30 98-138 35-65 (257)
35 4e2x_A TCAB9; kijanose, tetron 30.4 55 0.0019 32.7 5.2 110 97-207 12-141 (416)
36 1x0t_A Ribonuclease P protein 29.9 15 0.00051 32.2 0.8 18 127-144 92-109 (120)
37 3j20_Y 30S ribosomal protein S 28.9 18 0.00061 27.3 1.0 26 99-138 21-46 (50)
38 3o9x_A Uncharacterized HTH-typ 28.0 12 0.00043 31.7 -0.0 41 99-140 4-47 (133)
39 3j21_i 50S ribosomal protein L 27.7 32 0.0011 28.9 2.4 27 98-138 36-62 (83)
40 3rfq_A Pterin-4-alpha-carbinol 27.1 25 0.00084 32.9 1.9 71 394-465 98-183 (185)
41 3iz5_m 60S ribosomal protein L 26.2 37 0.0013 29.0 2.6 27 99-139 38-64 (92)
42 2k3r_A Ribonuclease P protein 25.9 18 0.00061 32.0 0.6 20 126-145 86-105 (123)
43 3pzy_A MOG; ssgcid, seattle st 24.8 38 0.0013 30.7 2.6 115 348-465 22-159 (164)
44 3iwt_A 178AA long hypothetical 24.5 30 0.001 31.1 1.9 34 431-464 143-177 (178)
45 3jyw_9 60S ribosomal protein L 24.4 36 0.0012 27.9 2.1 27 98-138 27-53 (72)
46 3izc_m 60S ribosomal protein R 23.4 42 0.0014 28.7 2.4 27 98-138 37-63 (92)
47 3w0f_A Endonuclease 8-like 3; 22.9 39 0.0013 33.9 2.5 33 96-138 250-282 (287)
48 3u50_C Telomerase-associated p 21.1 28 0.00096 32.5 1.0 72 81-201 27-103 (172)
49 1nui_A DNA primase/helicase; z 21.0 39 0.0013 32.1 1.9 35 94-142 11-46 (255)
50 2k4x_A 30S ribosomal protein S 20.7 53 0.0018 25.2 2.3 29 97-139 18-46 (55)
51 4a17_Y RPL37A, 60S ribosomal p 20.5 38 0.0013 29.5 1.6 27 99-139 38-64 (103)
52 2qjx_A Protein BIM1; calponin 20.3 52 0.0018 29.4 2.5 11 82-92 99-109 (127)
53 2aus_D NOP10, ribosome biogene 20.2 56 0.0019 25.9 2.3 27 93-119 13-39 (60)
No 1
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=100.00 E-value=2.5e-84 Score=659.47 Aligned_cols=272 Identities=36% Similarity=0.722 Sum_probs=257.0
Q ss_pred hhHHHHHhhhhhhch-hcCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHhhc-CeeecCC
Q 009800 21 GQFEETVHPYISKVL-MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQT-FRWVNAP 98 (525)
Q Consensus 21 ~~f~~~l~s~~~~v~-~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~WFK~~-F~wv~~P 98 (525)
++|+++|++++++|+ +||||.+|++||++|||++|+++|.+...+.++.++++ .++|.+|++||+|||++ |+|||+|
T Consensus 42 ~~f~~~l~~~s~~~~~~Yed~~~~~~al~~iP~d~l~~~a~~~~~~~~~~~~~~-~~~d~ll~~LL~WFk~~fF~wvn~p 120 (335)
T 1x3z_A 42 NQFAQGVLGQSQHLCTVYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGEN-IYTDYLVKELLRYFKQDFFKWCNKP 120 (335)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHHHHSCHHHHHHHHHHHHHHCCSSSSCT-HHHHHHHHHHHHHHHHTTCEECSSC
T ss_pred HHHHHHHHHHHHhHHHHhCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCCCcc-chhHHHHHHHHHHHHhcCCEeeCCC
Confidence 589999999999999 99999999999999999999999997766666555654 45678999999999997 8999999
Q ss_pred CCCCCCCCc---cc-cCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchhhHHHHHHHHHHcCC
Q 009800 99 PCDGCSNET---VG-QGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGY 174 (525)
Q Consensus 99 ~C~~Cg~~t---~~-~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~GrCgE~A~~F~~l~RAlG~ 174 (525)
||+.||+++ .. +|+.+|+++|..+||++||+|+|++||+.+||||||+|.+||+||+|+|+|||+||+++|||+|+
T Consensus 121 ~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFPRYn~~~~ll~tr~G~C~e~A~lF~~llRalGi 200 (335)
T 1x3z_A 121 DCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLILKSFGL 200 (335)
T ss_dssp CCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHHHHHHHHHHHHHTTTC
T ss_pred CccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccccCCcCCHHHHHHhCCcChHHHHHHHHHHHHHCCC
Confidence 999999985 45 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhcccc
Q 009800 175 ESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIA 254 (525)
Q Consensus 175 ~aR~V~d~~dHvW~EVy~~~~~rWI~VDP~e~~~D~PllYe~gwgKklsYVIAFs~dgv~DVTrRYt~~~~~~~~RR~rv 254 (525)
|||||+|+++|+|+|||++++++|||||||++++|+|++|+.||+|+|+|||||++|||+|||+||+.+ + .+ +|.+|
T Consensus 201 ~aR~V~~~~~H~W~EV~~~~~~rWv~vDp~~~~id~P~~ye~gw~k~msYVIAFs~dgv~DVT~RY~~~-~-~l-rR~rv 277 (335)
T 1x3z_A 201 DVRYVWNREDHVWCEYFSNFLNRWVHVDSCEQSFDQPYIYSINWNKKMSYCIAFGKDGVVDVSKRYILQ-N-EL-PRDQI 277 (335)
T ss_dssp CEEEEEETTTEEEEEEEETTTTEEEEEETTTTEESCTHHHHTTSCCCBCCEEEEETTEEEECHHHHCSS-S-BC-CCCSS
T ss_pred CeEEEecCCCcEEEEEEECCCCCEEEECCCCCccCCCceeecCCCCceEEEEEEcCCCCEECHHHhCcC-C-cc-ccccC
Confidence 999999999999999999998899999999999999999999999999999999999999999999999 4 33 88899
Q ss_pred cHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHhh
Q 009800 255 TEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERD 296 (525)
Q Consensus 255 ~E~wl~~~L~~l~~~~r~~ls~~e~~~Le~Rd~~E~~EL~~~ 296 (525)
+|+||..+|..||.++|.++|++++..|++||+.|..||...
T Consensus 278 ~e~wl~~~L~~l~~~~r~~~s~~e~~~L~~Rd~~E~~EL~~~ 319 (335)
T 1x3z_A 278 KEEDLKFLCQFITKRLRYSLNDDEIYQLACRDEQEQIELIRG 319 (335)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999855
No 2
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=100.00 E-value=3.8e-76 Score=592.54 Aligned_cols=277 Identities=42% Similarity=0.782 Sum_probs=259.5
Q ss_pred hhhHHHHHhhhhhhchhcCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCC-CCchhHHHHHHHHHHHHhhc-CeeecC
Q 009800 20 SGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKP-SKTEQDHAFLLQLLFWFKQT-FRWVNA 97 (525)
Q Consensus 20 ~~~f~~~l~s~~~~v~~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~-~~~~~~~~~l~~LL~WFK~~-F~wv~~ 97 (525)
.++|+++|++++++|++||||.+|++||++|||++|+++|.+++...++.++ ...++++.+|++||+|||++ |+|||+
T Consensus 2 ~~~f~~~l~~~~~~~~~yed~~~~~~al~~ip~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~wFk~~fF~~~~~ 81 (295)
T 2f4m_A 2 DSTILKVLQSNIQHVQLYENPVLQEKALTCIPVSELKRKAQEKLFRARKLDKGTNVSDEDFLLLELLHWFKEEFFRWVNN 81 (295)
T ss_dssp CSHHHHHHHHHHHHHHGGGCHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSTTSCSCCSHHHHHHHHHHHHHHTTCEECSS
T ss_pred chHHHHHHHHHHhhHHhhCCHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHhcCCEEeCC
Confidence 4679999999999999999999999999999999999999887654333221 12234678999999999997 899999
Q ss_pred CCCCCCCCCccccCC-CCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchhhHHHHHHHHHHcCCCe
Q 009800 98 PPCDGCSNETVGQGM-GTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYES 176 (525)
Q Consensus 98 P~C~~Cg~~t~~~g~-~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~GrCgE~A~~F~~l~RAlG~~a 176 (525)
|||+.||++|...|+ ++|+++|..+||++||.|+|..|+..+||||||+|.++|++|+|+|++||++|+++||++||||
T Consensus 82 P~c~~C~~~~~~~g~~~~~~~~e~~~~a~~vE~y~c~~c~~~~~~pr~~~~~~~l~~r~G~C~d~A~lf~al~Ra~GIpA 161 (295)
T 2f4m_A 82 IVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRALGFEA 161 (295)
T ss_dssp CCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHHHCEESHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcccCCcccccCCCCCCChhHhhcccchhheeeccccCceeecCCCCCHHHHHHcCCEeeHHHHHHHHHHHHHCCCCE
Confidence 999999999998888 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhcccccH
Q 009800 177 RLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATE 256 (525)
Q Consensus 177 R~V~d~~dHvW~EVy~~~~~rWI~VDP~e~~~D~PllYe~gwgKklsYVIAFs~dgv~DVTrRYt~~~~~~~~RR~rv~E 256 (525)
|||.++.+|+|+|||+++..+||+||||+++++.|++|+.||+++|+|||||+.||++|||+||+.+|+.+.++|.+|+|
T Consensus 162 R~V~Gy~~HaW~Evy~~g~~gWv~~Dpt~~~~~~p~~~e~gwgr~lsYViAf~~D~a~DVT~RY~~~~~~~~~rR~~v~e 241 (295)
T 2f4m_A 162 RYVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKE 241 (295)
T ss_dssp EEEEETTTEEEEEEEETTTTEEEEEETTTTEESCGGGTTTTSCCCCCCEEEECSSCEEECGGGGCSCHHHHHHHCCSSCH
T ss_pred EEEcCCCCEEEEEEEECCCCeEEEEeCCcCccCCCceEeeccCCCceEEEEECCccCccchhhcccchHHHHhhccCCCH
Confidence 99999999999999999877999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHhh
Q 009800 257 QTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERD 296 (525)
Q Consensus 257 ~wl~~~L~~l~~~~r~~ls~~e~~~Le~Rd~~E~~EL~~~ 296 (525)
+||..+|..||.++|.++|++++.+|++||+.|..||...
T Consensus 242 ~wl~~~l~~l~~~~r~~~s~~e~~~l~~Rd~~E~~el~~~ 281 (295)
T 2f4m_A 242 ELLRETINGLNKQRQLSLSESRRKELLQRIIVELVEFISP 281 (295)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHhHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999744
No 3
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=100.00 E-value=6.1e-35 Score=313.38 Aligned_cols=285 Identities=16% Similarity=0.131 Sum_probs=189.0
Q ss_pred HhhhhhhchhcCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCch-hH---HHHHHHHHHHHhhcCeeecCCCCCC
Q 009800 27 VHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTE-QD---HAFLLQLLFWFKQTFRWVNAPPCDG 102 (525)
Q Consensus 27 l~s~~~~v~~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~-~~---~~~l~~LL~WFK~~F~wv~~P~C~~ 102 (525)
|..+..+..-++|+.+|+.++++||-..+.. +. ...++.... .+ ...|+.|+.||++.|+ ++.| ...
T Consensus 53 L~H~~~RN~W~nD~~lq~~L~sllP~~i~~~-----l~--p~~~~~~~~~~~~~~~~~Lk~L~~ww~~~F~-it~p-~~~ 123 (533)
T 2qsf_A 53 MVHGFIRNEWINSKRLSRKLSNLVPEKVFEL-----LH--PQKDEELPLRSTRKLLDGLKKCMELWQKHWK-ITKK-YDN 123 (533)
T ss_dssp HHHHHHHHHHHTCHHHHHHHGGGSCHHHHHH-----TS--CCCCSSCTHHHHHHHHHHHHHHHHHHHHHCC-EECC-CSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhCCHHHHHh-----hC--cCCCccccccchHHHHHHHHHHHHHHHhhEE-EcCC-ccC
Confidence 4555555666899999999999999554321 11 111111111 11 1368999999999985 3444 244
Q ss_pred CCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchhhHHHHHHHHHHcCCCeEEEEeC
Q 009800 103 CSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDF 182 (525)
Q Consensus 103 Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~GrCgE~A~~F~~l~RAlG~~aR~V~d~ 182 (525)
||.-. +.-.|.... .++.| ..++..++++.++++|++|+|++||+||++||||+|++||+|++.
T Consensus 124 ~g~~~-------~~w~e~~~~-------~~~~~--~f~~~~~~~f~~~~~~~~Gs~d~~AqlF~aLlRalG~~aRlV~SL 187 (533)
T 2qsf_A 124 EGLYM-------RTWKEIEMS-------ANNKR--KFKTLKRSDFLRAVSKGHGDPDISVQGFVAMLRACNVNARLIMSC 187 (533)
T ss_dssp CTTSC-------CCHHHHHHT-------TTTCC--CEECCCHHHHHHHHHHTEECHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCccc-------cCccccchh-------hcccc--ccccccHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCceEEEecc
Confidence 55421 111122110 11111 113344688999999999999999999999999999999999852
Q ss_pred -------------------------CCeeEEEEEeCCCCCeEEeccCCC-cC---CCCeeeec-----CccCccceEEee
Q 009800 183 -------------------------TDHVWTECFSQSLGRWMHLDPCEG-IY---DRPLLYEK-----GWNKKLNYVIAI 228 (525)
Q Consensus 183 -------------------------~dHvW~EVy~~~~~rWI~VDP~e~-~~---D~PllYe~-----gwgKklsYVIAF 228 (525)
.+|+|+|||++.+++|||||||++ ++ +.|.+||. +|+++|+|||||
T Consensus 188 qP~~f~~~k~~~~~~k~~~~~~~~~~P~~W~EV~s~~~~rWi~VDp~~~~~id~~~~~~~~Ep~~~~~~~~~~m~YViAf 267 (533)
T 2qsf_A 188 QPPDFTNMKIDTSLNGNNAYKDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAY 267 (533)
T ss_dssp CCCCTTCCBSCCCCC---CHHHHTTSCSEEEEEEETTTTEEEEEESSSSCEEECCSSCCTTSCCSTTTTSSCCCCEEEEE
T ss_pred ccccccccccccCcccCCccccccCCCeEEEEEEEcCCCeEEEEeccccccccccccccccccccccccccCceeEEEEE
Confidence 379999999999999999999985 44 57788885 499999999999
Q ss_pred cCC-cceechhhhccChHHhhhhcccc-----cHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHhhccCCC-
Q 009800 229 SKD-GVFDVTKRYTRKWHEVLSRRNIA-----TEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTD- 301 (525)
Q Consensus 229 s~d-gv~DVTrRYt~~~~~~~~RR~rv-----~E~wl~~~L~~l~~~~r~~ls~~e~~~Le~Rd~~E~~EL~~~~~~~~- 301 (525)
+.| +++|||+||+.+|+.. .+|.++ .+.||..+|+.++++.+ ..+|..|+.||......+.
T Consensus 268 ~~d~~~kDVT~RY~~~~~~k-~rr~Ri~~~~~~~~W~~~~L~~~~~~~~-----------~~~d~~Ed~el~~~~~~e~~ 335 (533)
T 2qsf_A 268 DRKYGCRDVTRRYAQWMNSK-VRKRRITKDDFGEKWFRKVITALHHRKR-----------TKIDDYEDQYFFQRDESEGI 335 (533)
T ss_dssp CTTCCEEECHHHHCTTCCCC-CGGGSGGGSHHHHHHHHHHHHHHCCSCC-----------CHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCceEecchhhhhchhhh-hheeeecCCcchHHHHHHHHHHHhcCCc-----------cccchhHHHHHHHHHhcCCC
Confidence 987 5999999999999654 456566 48999999999885211 3456677777754432221
Q ss_pred CCC-CCCCCCccccHHHHHhhcCCCCCCCCCcCCCCCCceeecc----cceeeEeeccc
Q 009800 302 DAP-VSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCID----EHVTTIYNAFS 355 (525)
Q Consensus 302 ~~~-~~l~GRqSGS~eWr~aRGE~G~~~~~s~~~s~cp~r~c~d----~hv~~iY~a~~ 355 (525)
+++ +++. .++.+-. |--...+.++.|..-|++.|.. ..+..||....
T Consensus 336 P~s~~~fK----~HP~yvL---er~L~k~E~i~P~a~~~g~~~~~~k~~~~E~VY~R~~ 387 (533)
T 2qsf_A 336 PDSVQDLK----NHPYYVL---EQDIKQTQIVKPGCKECGYLKVHGKVGKVLKVYAKRD 387 (533)
T ss_dssp CSSTGGGT----TCSSEEE---GGGSCTTEEECTTCCCSEEEECCSTTCCEEEEEEGGG
T ss_pred CccHHHHc----CCcHhhh---hhhhccceeeCCCCceeeEEecCcCCCcccceeehhh
Confidence 111 1110 0111111 1112335567777778898864 33458998876
No 4
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.5e-13 Score=137.86 Aligned_cols=98 Identities=14% Similarity=0.279 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCcc
Q 009800 78 HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 157 (525)
Q Consensus 78 ~~~l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~Gr 157 (525)
...+++|.+|..+.|+|.....= .+ .++..+|++|+|.
T Consensus 143 ~~~~~ai~~~v~~~~~Y~~~~~~---------~~---------------------------------~~a~~~l~~~~G~ 180 (293)
T 3isr_A 143 YSKVLAITDWIYNNVEYISGSTN---------SQ---------------------------------TSAFDTITERAGV 180 (293)
T ss_dssp HHHHHHHHHHHHHHSEECTTSCC---------TT---------------------------------CCHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHhhcEEeccCCC---------CC---------------------------------CCHHHhhcCCcEe
Confidence 35799999999999998653220 00 1468899999999
Q ss_pred chhhHHHHHHHHHHcCCCeEEEEe-------CCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccC
Q 009800 158 CGEWANCFTLYCRAFGYESRLILD-------FTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNK 220 (525)
Q Consensus 158 CgE~A~~F~~l~RAlG~~aR~V~d-------~~dHvW~EVy~~~~~rWI~VDP~e~~~D~PllYe~gwgK 220 (525)
|.++|++|++|||++|||||||.. ...|+|+|||.++ +|+++||+.+..+. .....++|+
T Consensus 181 C~d~A~l~val~Ra~GIPAR~VsGy~~~~~~~~~HAW~Evyl~g--gWv~~DpT~~~~~~-~~I~vA~GR 247 (293)
T 3isr_A 181 CRDFAHLGIALCRALSIPARYFTGYAFKLNPPDFHACFEAYIGG--NWIIFDATRLVPLN-GLVKIATGR 247 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEETTCSSCCEEEEEEEEETT--EEEEECTTCCSCGG-GEEEEEEES
T ss_pred hHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCeEEEEEEEECC--cEEEEECCCCCCCC-CeEEEEECC
Confidence 999999999999999999999964 3569999999986 79999999876432 234445554
No 5
>2g9g_A Pngase, peptide N-glycanase; beta-sandwich, hydrolase; 2.00A {Mus musculus} SCOP: b.18.1.29
Probab=99.45 E-value=1.2e-16 Score=155.29 Aligned_cols=132 Identities=21% Similarity=0.250 Sum_probs=92.6
Q ss_pred CCCCCCCCCCccccHHHHHhhcCCCCCC-CCCcCCCCCCceeecccceeeEeeccc---hhhhccccCC-CchhhHHHHH
Q 009800 301 DDAPVSLPGRQSGDKEWRISRSEIGSDD-NCSLSCSSCPVRVCIDEHVTTIYNAFS---SVLSHFVENN-VPKSGAIELL 375 (525)
Q Consensus 301 ~~~~~~l~GRqSGS~eWr~aRGE~G~~~-~~s~~~s~cp~r~c~d~hv~~iY~a~~---~~ls~~~~~~-~~~~~a~~~~ 375 (525)
++++.+++||+|||++||.||||+|... ..++.|++. ++.+.+|+..||... .+.++..+.- .|.+++..+.
T Consensus 16 ~~~~~e~~GRtSGSl~WR~aRGE~g~~~~~~v~~p~e~---e~~~~~f~f~Y~~~~D~Ysr~~~n~~~i~gW~s~~~~~~ 92 (221)
T 2g9g_A 16 PRGSHELGGRVSGSLAWRVARGETGLERKEILFIPSEN---EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKME 92 (221)
T ss_dssp --------CEECSSEEEC---------CCCCEECCCHH---HHHHTEEEEEEETTTTEEEEGGGTTEEEESGGGGCSSEE
T ss_pred CCCccccCCcccccHHHHHHhhccccCcCceeeccchh---hhhCCEEEEEEeccCcEEEEecCCCccccchhhcccccc
Confidence 3567899999999999999999998742 348999999 999999999999988 5555443333 6999999999
Q ss_pred HHHHHHHhhccCCCcccccccccCCCCchhHHHHhh-cccHHHHHHhhccc--cccCCCCCeEEEecCC
Q 009800 376 KILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQL-LPSIGHLLRVLSLK--SELNTDGRVDIVLAGD 441 (525)
Q Consensus 376 ~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~~~~~~-lps~~~ll~~lslk--~~~~~~g~~~~~~~~~ 441 (525)
.||||++.||||+ |.+|++.-+... |-|+| |++.+..+.-|.++ .....+|+|.+++-++
T Consensus 93 nIfRkvE~DWkmv-YLaR~Egt~~g~-----IsWkFdl~~~gl~V~ki~I~~~sq~f~~G~v~~~i~~~ 155 (221)
T 2g9g_A 93 SIFRKVEKDWNMV-YLARKEGSSFAY-----ISWKFECGSAGLKVDTVSIRTSSQSFESGSVRWKLRSE 155 (221)
T ss_dssp SEEEEEETTTTEE-EEEECTTCSEEE-----EEEEEECTTTTEEEEEEEEEEEEEECTTCEEEEEEECS
T ss_pred ceEEEEeCCCceE-EEEEeCCCCEEE-----EEEEEecCCCCcEEEEEEEEEeeEEecCCEEEEEEeCC
Confidence 9999999999999 999988665544 33888 89877667765555 4455799998877763
No 6
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=98.86 E-value=1.7e-09 Score=119.56 Aligned_cols=54 Identities=26% Similarity=0.547 Sum_probs=46.5
Q ss_pred cCccchhhHHHHHHHHHHcCCCeEEEEeC-------------------------------CCeeEEEEEeC------CCC
Q 009800 154 KRGRCGEWANCFTLYCRAFGYESRLILDF-------------------------------TDHVWTECFSQ------SLG 196 (525)
Q Consensus 154 R~GrCgE~A~~F~~l~RAlG~~aR~V~d~-------------------------------~dHvW~EVy~~------~~~ 196 (525)
|.|.|.+||++|+++||++|||||+|.++ ..|+|+|||.+ +..
T Consensus 273 k~G~C~dfA~~~~~llRalGIPAR~VsGy~~~~~~~~~l~~d~~~~~~g~~~~~~~d~~~~~HAW~Ev~~~rpDLp~g~~ 352 (687)
T 2q3z_A 273 KYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYE 352 (687)
T ss_dssp EEECHHHHHHHHHHHHHHHTCCEEEEEEEEEECC--CCHHHHHHHC---------CCCCBSEEEEEEEEECCTTSSTTCC
T ss_pred ceeehHHHHHHHHHHHHhCCCCcEEEeecccccccccccccccccCCCCceeeecCCcccceeEEEEEEcccCCCCCCCC
Confidence 37999999999999999999999999321 26999999998 545
Q ss_pred CeEEeccCCCc
Q 009800 197 RWMHLDPCEGI 207 (525)
Q Consensus 197 rWI~VDP~e~~ 207 (525)
+|+.+||+.+.
T Consensus 353 GW~~~DpT~~~ 363 (687)
T 2q3z_A 353 GWQALDPTPQE 363 (687)
T ss_dssp EEEEECCSSCC
T ss_pred CEEEECCCCCc
Confidence 89999999754
No 7
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=98.64 E-value=2.1e-08 Score=110.88 Aligned_cols=59 Identities=31% Similarity=0.532 Sum_probs=48.6
Q ss_pred HHHHHhc-----CccchhhHHHHHHHHHHcCCCeEEEEeC-------------------------------CCeeEEEEE
Q 009800 148 LKLVETK-----RGRCGEWANCFTLYCRAFGYESRLILDF-------------------------------TDHVWTECF 191 (525)
Q Consensus 148 ~~Ll~tR-----~GrCgE~A~~F~~l~RAlG~~aR~V~d~-------------------------------~dHvW~EVy 191 (525)
.+.+.+| .|.|.+||++|+++||++|||||+|-++ ..|+|+|+|
T Consensus 257 ~~~~~~~~~PV~~G~C~~fA~~~~~~lR~lGIPaR~Vtgy~s~~d~~~nL~~d~~~~~~g~~~~~~~dsIW~~HaW~E~w 336 (692)
T 1vjj_A 257 KNWKKSGLSPVRYGQCWVFAGTLNTALRSLGIPSRVITNFNSAHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGW 336 (692)
T ss_dssp HHHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEEEECSSSSSEEEEEECTTSCBCCCCSCEEEEEEEEEEEE
T ss_pred HHHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEcccccccCCCCCcccceeeccCCcccccccccccceeEEEEEe
Confidence 3566776 3999999999999999999999999321 269999999
Q ss_pred eC------CCCCeEEeccCCC
Q 009800 192 SQ------SLGRWMHLDPCEG 206 (525)
Q Consensus 192 ~~------~~~rWI~VDP~e~ 206 (525)
.. +.++|+.+||+..
T Consensus 337 ~~rpDLp~~~~gW~~~DpT~~ 357 (692)
T 1vjj_A 337 FVRSDLGPSYGGWQVLDATPQ 357 (692)
T ss_dssp ECCTTTCGGGCEEEEECCSCS
T ss_pred ccccCCCCCCCCEEEECCCCC
Confidence 95 2358999999963
No 8
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=98.63 E-value=2.1e-08 Score=111.33 Aligned_cols=58 Identities=24% Similarity=0.676 Sum_probs=48.9
Q ss_pred HHHHHhcC----ccchhhHHHHHHHHHHcCCCeEEEEeC--------------------------------CCeeEEEEE
Q 009800 148 LKLVETKR----GRCGEWANCFTLYCRAFGYESRLILDF--------------------------------TDHVWTECF 191 (525)
Q Consensus 148 ~~Ll~tR~----GrCgE~A~~F~~l~RAlG~~aR~V~d~--------------------------------~dHvW~EVy 191 (525)
.+.+.+|+ |.|.+||.+|+.+||++|||||+|-++ ..|+|+|+|
T Consensus 300 ~~~~~~~~PV~~G~C~~fA~v~~~~lR~lGIPaRvVtgy~sa~d~~~~l~v~~~~~~~g~~~~~~~~dsIW~~H~W~E~w 379 (731)
T 1ex0_A 300 LEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAW 379 (731)
T ss_dssp HHHHHHTSCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEECCSCTTBCEEEEEECTTSCBCTTTCCCCCEEEEEEEEEE
T ss_pred HHHHhcCCccceeeehhHHHHHHHHHHhCCCCeeEEcccccCCCCCCcceeeEEecccCccccccccCccceeeEEEEEe
Confidence 45566888 999999999999999999999999321 249999999
Q ss_pred eC------CCCCeEEeccCC
Q 009800 192 SQ------SLGRWMHLDPCE 205 (525)
Q Consensus 192 ~~------~~~rWI~VDP~e 205 (525)
.. +.++|+.+||+.
T Consensus 380 ~~rpDLp~g~~GWq~~DpTp 399 (731)
T 1ex0_A 380 MTRPDLPVGFGGWQAVDSTP 399 (731)
T ss_dssp ECCTTSCTTCCEEEEEEEEE
T ss_pred ccccCCCCCCCCeEEEcCCC
Confidence 95 346899999995
No 9
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=98.62 E-value=2.9e-08 Score=109.67 Aligned_cols=58 Identities=28% Similarity=0.518 Sum_probs=48.1
Q ss_pred HHHHHhc-C----ccchhhHHHHHHHHHHcCCCeEEEEeC---------------------------------CCeeEEE
Q 009800 148 LKLVETK-R----GRCGEWANCFTLYCRAFGYESRLILDF---------------------------------TDHVWTE 189 (525)
Q Consensus 148 ~~Ll~tR-~----GrCgE~A~~F~~l~RAlG~~aR~V~d~---------------------------------~dHvW~E 189 (525)
.+.+.+| + |.|.+||.+|+++||++|||||+|-++ ..|+|+|
T Consensus 257 ~~~~~~~~~PV~~G~C~~fA~v~~t~lR~lGIPaR~Vtgy~sa~d~~~nL~id~~~~~~g~~~~~~~~~dsiw~~HaW~E 336 (695)
T 1g0d_A 257 QQWSKAGVRPVKYGQCWVFAAVACTVLRCLGIPTRPITNFASAHDVDGNLSVDFLLNERLESLDSRQRSDSSWNFHCWVE 336 (695)
T ss_dssp HHHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEETTTTTTCSEEEEEECTTSCBSCTTCCBCSSEEEEEEEE
T ss_pred HHHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEccccccCCCCCccceeeeecccCceecccccCCcceeeEEEEE
Confidence 3446777 5 999999999999999999999999321 2599999
Q ss_pred EEeC------CCCCeEEeccCC
Q 009800 190 CFSQ------SLGRWMHLDPCE 205 (525)
Q Consensus 190 Vy~~------~~~rWI~VDP~e 205 (525)
+|.. +.++|+.+||+.
T Consensus 337 ~w~~rpDLp~~~~gWq~~DpTp 358 (695)
T 1g0d_A 337 SWMSREDLPEGNDGWQVLDPTP 358 (695)
T ss_dssp EEECCTTSCTTCCEEEEEECSC
T ss_pred eecccCCCCCCCCCeEEEcCCC
Confidence 9985 345899999996
No 10
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=98.40 E-value=6.9e-07 Score=95.20 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCcc
Q 009800 78 HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 157 (525)
Q Consensus 78 ~~~l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~Gr 157 (525)
...++++.+|-+..++|+.... .| .|. .-.++.++|++|.|.
T Consensus 245 ~ek~~~iy~~V~~~i~y~~~~~--~~------~g~------------------------------~~~~a~~vl~~~~G~ 286 (506)
T 3kd4_A 245 QEKVNIIRDHILNNLSTCPIPM--AM------TGY------------------------------TVRDIDTVLRSAYGT 286 (506)
T ss_dssp HHHHHHHHHHHHHHCEECCCCG--GG------GTT------------------------------CCCCHHHHHHHTEEC
T ss_pred HHHHHHHHHHHHhccEecceec--cc------CCC------------------------------CCCCHHHHHHhCCcc
Confidence 4578999999999999973221 01 111 013579999999999
Q ss_pred chhhHHHHHHHHHHcCCCeEEEEe-------------CCCeeEEEEEeCCCCCeEEeccCC
Q 009800 158 CGEWANCFTLYCRAFGYESRLILD-------------FTDHVWTECFSQSLGRWMHLDPCE 205 (525)
Q Consensus 158 CgE~A~~F~~l~RAlG~~aR~V~d-------------~~dHvW~EVy~~~~~rWI~VDP~e 205 (525)
|.+.|++|++||||+|||||+|+- .-+|+|++|+.. ++|.-+||+.
T Consensus 287 C~d~a~Ll~AllRa~GIpA~~v~~~t~~~~~~~~~lp~~nh~i~~v~~~--g~~y~lDat~ 345 (506)
T 3kd4_A 287 PLEIAQLLNVMLNAAGIPSEVLAVYPGHLDTDACGLAAIQTLAVKATVD--GKDQYLSASP 345 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEETTSCGGGCCSTTCCEEEEEEEET--TEEEEESSSC
T ss_pred hHHHHHHHHHHHHHCCCCcEEEEEEcCCCCCccCCCCCCCEEEEEEEEC--CEEEEEecCC
Confidence 999999999999999999999951 138999999987 4799999984
No 11
>2i74_A Pngase; beta-sandwich, hydrolase; HET: MAN; 1.75A {Mus musculus} SCOP: b.18.1.29 PDB: 2g9f_A
Probab=97.45 E-value=6.4e-07 Score=85.56 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=79.6
Q ss_pred CcCCCCCCceeecccceeeEeeccc---hhhhccccCC-CchhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhH
Q 009800 331 SLSCSSCPVRVCIDEHVTTIYNAFS---SVLSHFVENN-VPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQK 406 (525)
Q Consensus 331 s~~~s~cp~r~c~d~hv~~iY~a~~---~~ls~~~~~~-~~~~~a~~~~~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~ 406 (525)
++.|++. ++.+.+++..|+... .+.++..+.- .|.+++..+..||||++.||||+ |.+|++.-+...
T Consensus 7 v~~p~e~---e~~~~~~~f~Y~~~~D~Y~r~~~n~~~i~gW~s~~~~~~nIfRkvE~Dwkmv-YLaR~Egt~~g~----- 77 (189)
T 2i74_A 7 LFIPSEN---EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKMESIFRKVEKDWNMV-YLARKEGSSFAY----- 77 (189)
T ss_dssp CBCCCHH---HHHHTEEEEEEETTTTEEEETTTTTEEEESGGGGCSSEESEEEEEETTTTEE-EEEECTTCSEEE-----
T ss_pred EEecchh---hhhCCEEEEEEEccCcEEEEecCCCccccchhhccccccceEEEEeCCCceE-EEEEcCCCCEEE-----
Confidence 7899999 999999999999988 5555443333 69999999999999999999999 999988665544
Q ss_pred HHHhh-cccHHHHHHhhcc--ccccCCCCCeEEEecC
Q 009800 407 IVHQL-LPSIGHLLRVLSL--KSELNTDGRVDIVLAG 440 (525)
Q Consensus 407 ~~~~~-lps~~~ll~~lsl--k~~~~~~g~~~~~~~~ 440 (525)
|-|+| |++.+..+.-|.+ +.....+|+|.+.+..
T Consensus 78 IsWkFdl~~~gl~v~~i~i~~~sq~f~~G~v~~~~~~ 114 (189)
T 2i74_A 78 ISWKFECGSAGLKVDTVSIRTSSQSFESGSVRWKLRS 114 (189)
T ss_dssp EEEEEECGGGTEEEEEEEEECBEEECTTCEEEEEEEC
T ss_pred EEEEEecCCCCcEEEEEEEEEeEEEecCCEEEEEEec
Confidence 33888 8987766664444 4566789999665555
No 12
>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A
Probab=94.65 E-value=0.079 Score=50.82 Aligned_cols=110 Identities=16% Similarity=0.256 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCcc
Q 009800 78 HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 157 (525)
Q Consensus 78 ~~~l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~Gr 157 (525)
...|..+=++|. .++|++...= -|.. . .+..|.+.|..+.|-
T Consensus 44 ~~~L~~VN~~vN-~i~~~~D~~~---------~G~~--------------------------D--yWatP~E~l~~g~GD 85 (193)
T 4fgq_A 44 KIQLEKVNSFFN-QFNYETDPIT---------GASD--------------------------D--YWKSPVEFIVDGGGD 85 (193)
T ss_dssp HHHHHHHHHHHH-TSEECCCTTT---------SSCC--------------------------S--SCCCHHHHHHHTEEC
T ss_pred HHHHHHHHHHHH-hcccccchhh---------cCCC--------------------------C--cCCCcHhHhCCCCcC
Confidence 346777888887 8888876642 2210 1 234689999999999
Q ss_pred chhhHHHHHHHHHHcCCCe---EEEE--e---CCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccce--EEe
Q 009800 158 CGEWANCFTLYCRAFGYES---RLIL--D---FTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNY--VIA 227 (525)
Q Consensus 158 CgE~A~~F~~l~RAlG~~a---R~V~--d---~~dHvW~EVy~~~~~rWI~VDP~e~~~D~PllYe~gwgKklsY--VIA 227 (525)
|.|||.+=-..++++|+|+ |+++ + ...|++.-||.....+|+-+|-....+ ..|.+.-.| +.+
T Consensus 86 CEDyaI~K~~~L~~~G~p~~~Lri~vVr~~~~~~~HaVL~v~~~~~~~~lVLDNl~~~I-------~p~s~r~dl~p~~S 158 (193)
T 4fgq_A 86 CEDFAIIKYFTLVAVGVPSDQLRITYAASLTLNQAHMVLSFYPTPESEPLILDSLESKI-------LKASARPDLKPVYS 158 (193)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEEEEETTTTEEEEEEEECSSTTSCCEEECSSCSSC-------EEGGGCTTEEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCHHHeEEEEEEecCCCCCCEEEEEEECCCCCceEeeCCchhc-------cCchhcCCcceEEe
Confidence 9999999999999999995 6654 3 357999999987556899998764332 134443333 556
Q ss_pred ecCCc
Q 009800 228 ISKDG 232 (525)
Q Consensus 228 Fs~dg 232 (525)
|+..|
T Consensus 159 fn~~g 163 (193)
T 4fgq_A 159 FNAEG 163 (193)
T ss_dssp ECSSC
T ss_pred eCCCC
Confidence 66666
No 13
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=92.02 E-value=0.19 Score=47.25 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHhhccCchhhHHHHHhhhhhhchhcCCHHHHHHHhcc-CChHHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 009800 3 QAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKT-VPVERLEEKSLVSLAREGNFKPSKTEQDHAFL 81 (525)
Q Consensus 3 q~e~~~~~~qq~~~~~~~~~f~~~l~s~~~~v~~YEd~~lq~~Al~~-IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l 81 (525)
-.++|+.+++.+....+.+.+.+++.+.+..+..=.||.|....+.- |+.+.|-......++ +.+.......+.
T Consensus 44 A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~isp~~lv~Ms~eEla-----s~elk~~~e~~~ 118 (178)
T 3po3_S 44 AKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLA-----PAPLKQKIEEIA 118 (178)
T ss_dssp HHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHSSSCSHHHHHHHHCCCTTHHHHCCTTTTSS-----CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCCCCCHHHHHHHhcCCCCHHHHHhcCchhhC-----CHHHHHHHHHHH
Confidence 35778888887765445557889999888877766889998877665 777776332111111 000001111122
Q ss_pred HHHHHHHhhcCee-----ecCCCCCCCCCCcc-ccCCCCCChhhhccCCceEEEeeeCCCCccccc
Q 009800 82 LQLLFWFKQTFRW-----VNAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 141 (525)
Q Consensus 82 ~~LL~WFK~~F~w-----v~~P~C~~Cg~~t~-~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RF 141 (525)
++-| ++..-.. ++.-+|+.||+... ..-...=++|| ...=-|.|..||+.-||
T Consensus 119 ~e~l--~~~~~~~~~~~~t~~~~Cp~C~~~~a~~~q~Q~rsaDE-----~mt~f~~C~~C~~~w~f 177 (178)
T 3po3_S 119 KQNL--YNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSAAA-----PLTTFCTCEACGNRWKF 177 (178)
T ss_dssp HHHH--HHTBCCCCCCCCBSSSCCSSSCCSCEECCCCCCSCTTS-----CCCCCEEETTTCCEECC
T ss_pred HHHH--HHhhhccccCCCcCCcCCCCCCCCceEEEEeecccCCC-----CCcEEEEcCCCCCeecc
Confidence 2222 4433222 34458999998643 22111122333 22346999999998887
No 14
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=82.12 E-value=3.4 Score=41.69 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhccCchhhHHHHHhhhhhhchhcCCHHHHHHHhcc-CChHHHHHHHHHHHHHcCCCCCCCchhHHHHHH
Q 009800 4 AEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKT-VPVERLEEKSLVSLAREGNFKPSKTEQDHAFLL 82 (525)
Q Consensus 4 ~e~~~~~~qq~~~~~~~~~f~~~l~s~~~~v~~YEd~~lq~~Al~~-IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~ 82 (525)
.++|+.++..+...+.++.+.+++.+.+..+-.=.||.|....+.- |+.+.|-......++.+ +...+...+.+
T Consensus 176 ~~IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasd-----e~k~~~~~~~~ 250 (309)
T 1pqv_S 176 KAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPA-----PLKQKIEEIAK 250 (309)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCcCCChHHHHHHHcCCCCHHHHhcCCHHHhCCH-----HHHHHHHHHHH
Confidence 4677777777654433334888888877776655799998877765 77666633221112100 00001111222
Q ss_pred HHHHHHhhcC---ee--ecCCCCCCCCCCcc-ccCCCCCChhhhccCCceEEEeeeCCCCccccc
Q 009800 83 QLLFWFKQTF---RW--VNAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 141 (525)
Q Consensus 83 ~LL~WFK~~F---~w--v~~P~C~~Cg~~t~-~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RF 141 (525)
+-|+ .... .. ++.-.|+.||.... +.-...=++|| ...=-|.|..||+.-+|
T Consensus 251 e~l~--~~~~~~~~~~~~~~~~C~~C~~~~~~~~q~Q~rsaDe-----~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 251 QNLY--NAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADE-----PLTTFCTCEACGNRWKF 308 (309)
T ss_pred HHHH--HhhhccccccCcccccCCCCCCCeeEEEEeecccCCC-----CCcEEEEeCCCCCceec
Confidence 2211 1111 12 44567999998633 22111112332 22336999999998777
No 15
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=71.32 E-value=8.8 Score=38.06 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=45.4
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEE----EeC--------CCeeEEEEEeCCCCCeEEeccCCCcCC---CC
Q 009800 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLI----LDF--------TDHVWTECFSQSLGRWMHLDPCEGIYD---RP 211 (525)
Q Consensus 148 ~~Ll-~tR~GrCgE~A~~F~~l~RAlG~~aR~V----~d~--------~dHvW~EVy~~~~~rWI~VDP~e~~~D---~P 211 (525)
.|++ ..|-|.|-|.-.+|..+|+++|++++.+ +.. .+|.=.=|-.++ ++| -||.--|..- .|
T Consensus 62 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~~P 139 (295)
T 2ija_A 62 DQVVRRNRGGWCLQVNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDG-RNY-IVDAGSGRSYQMWQP 139 (295)
T ss_dssp HHHHTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEECSSCCEEEEEEEETT-EEE-EECSCCCGGGCCSSC
T ss_pred HHHhcCCCcEEhHHHHHHHHHHHHHcCCcEEEEEEEEeeCCCCCCCCCCCcEEEEEEECC-ceE-EEeCCCCCccCCCce
Confidence 4555 4678899999999999999999999886 332 346555565554 356 5677655432 56
Q ss_pred eeee
Q 009800 212 LLYE 215 (525)
Q Consensus 212 llYe 215 (525)
+...
T Consensus 140 l~L~ 143 (295)
T 2ija_A 140 LELI 143 (295)
T ss_dssp EECC
T ss_pred EEcc
Confidence 6554
No 16
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=69.66 E-value=11 Score=37.17 Aligned_cols=67 Identities=24% Similarity=0.218 Sum_probs=48.7
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----e--------CCCeeEEEEEeCCCCCeEEeccCCCc--CCCCe
Q 009800 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D--------FTDHVWTECFSQSLGRWMHLDPCEGI--YDRPL 212 (525)
Q Consensus 148 ~~Ll-~tR~GrCgE~A~~F~~l~RAlG~~aR~V~----d--------~~dHvW~EVy~~~~~rWI~VDP~e~~--~D~Pl 212 (525)
.|++ ..|-|.|-|...+|..+|+++||+++.+. . ..+|.=.=|-.++ +.| -||.--|. .-.|+
T Consensus 62 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~Pl 139 (278)
T 2bsz_A 62 DKIVLGGRGGYCFEHNLLFMHALKALGFEVGGLAARVLWGQSEDAITARSHMLLRVELDG-RTY-IADVGFGGLTLTAPL 139 (278)
T ss_dssp HHHTTSCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECSSCCSSSSCCCCEEEEEEEETT-EEE-EECSCCSSSCCCSCE
T ss_pred HHHHhCCCCeehHHHHHHHHHHHHHCCCeEEEEEEEEeeCCCCCCCCCCccEEEEEEECC-ceE-EEeCCCCccCcCceE
Confidence 4454 46788999999999999999999998873 1 2347767677765 367 57887654 35787
Q ss_pred eeec
Q 009800 213 LYEK 216 (525)
Q Consensus 213 lYe~ 216 (525)
....
T Consensus 140 ~L~~ 143 (278)
T 2bsz_A 140 LLEP 143 (278)
T ss_dssp ECCB
T ss_pred EccC
Confidence 7654
No 17
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=69.16 E-value=9.4 Score=37.75 Aligned_cols=67 Identities=24% Similarity=0.282 Sum_probs=49.1
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----e-------CCCeeEEEEEeCCCCCeEEeccCCCc--CCCCee
Q 009800 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D-------FTDHVWTECFSQSLGRWMHLDPCEGI--YDRPLL 213 (525)
Q Consensus 148 ~~Ll-~tR~GrCgE~A~~F~~l~RAlG~~aR~V~----d-------~~dHvW~EVy~~~~~rWI~VDP~e~~--~D~Pll 213 (525)
.|++ ..|-|.|-|...+|..+|+++||+++.+. . ..+|.=.=|-.++ ++| =||.--|. .-.|+.
T Consensus 61 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~Pl~ 138 (284)
T 1e2t_A 61 EKLLYARRGGYCFELNGLFERALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDVED-EQW-IADVGFGGQTLTAPLR 138 (284)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEETT-EEE-EECSCSCTTCCSSCEE
T ss_pred HHHhcCCCcEEhHHHHHHHHHHHHHCCCeEEEEEEEEecCCCCCCCCCccEEEEEEECC-ceE-EEecCCCccCcCceEE
Confidence 5555 56778999999999999999999999873 1 2357767777765 367 57877654 357776
Q ss_pred eec
Q 009800 214 YEK 216 (525)
Q Consensus 214 Ye~ 216 (525)
...
T Consensus 139 L~~ 141 (284)
T 1e2t_A 139 LQA 141 (284)
T ss_dssp SCB
T ss_pred ccC
Confidence 653
No 18
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=65.04 E-value=4.1 Score=40.76 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=47.5
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----e-C--------CCeeEEEEEeCCCCCeEEeccCCCc--CCCC
Q 009800 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D-F--------TDHVWTECFSQSLGRWMHLDPCEGI--YDRP 211 (525)
Q Consensus 148 ~~Ll-~tR~GrCgE~A~~F~~l~RAlG~~aR~V~----d-~--------~dHvW~EVy~~~~~rWI~VDP~e~~--~D~P 211 (525)
.|++ +.|-|.|-|...+|..+|+++||+++.+. . . .+|.=.=|-.++ ++| =||.--|. .-.|
T Consensus 82 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~l~arV~~~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~P 159 (299)
T 1w4t_A 82 AKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAE-GEF-LVDVGFGSANPPRA 159 (299)
T ss_dssp HHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETT-EEE-EECSCSGGGCCSSC
T ss_pred HHHHhcCCCcchHhHHHHHHHHHHHcCCeEEEEEEEEEeCCCCcCCCCCCccEEEEEEECC-ceE-EEeCCCCCcCcCee
Confidence 5666 56788999999999999999999999862 1 1 135556666665 367 57876553 3577
Q ss_pred eeeec
Q 009800 212 LLYEK 216 (525)
Q Consensus 212 llYe~ 216 (525)
+....
T Consensus 160 l~L~~ 164 (299)
T 1w4t_A 160 LPLPG 164 (299)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 76653
No 19
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=64.75 E-value=5.5 Score=39.70 Aligned_cols=67 Identities=22% Similarity=0.182 Sum_probs=43.9
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEEe----------CCCeeEEEE-EeCCCCCeEEeccCCC-cCCCCeee
Q 009800 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLILD----------FTDHVWTEC-FSQSLGRWMHLDPCEG-IYDRPLLY 214 (525)
Q Consensus 148 ~~Ll-~tR~GrCgE~A~~F~~l~RAlG~~aR~V~d----------~~dHvW~EV-y~~~~~rWI~VDP~e~-~~D~PllY 214 (525)
.|++ ..|-|.|-|...+|..+|+++||+++.+.. ..+|.=.=| -.++.++| -||.--| ..-.|+..
T Consensus 71 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~H~~l~V~~l~dg~~y-lvDVGFG~~~~~Pl~L 149 (293)
T 3d9w_A 71 DKLVHSRRGGYCYENAGLFAAALERLGFGVTGHTGRVTMGAGGLRPATHALLRVTTADDDRVW-MCDVGFGRGPLRPYEL 149 (293)
T ss_dssp HHHTSSSCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCSCCCEEEEEEEEECSSCSCEE-EECCSSSSCCSSCEES
T ss_pred HHHHHcCCCcChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCccEEEEEEEcCCCCeE-EEecCCCcCcCccEEe
Confidence 3444 368899999999999999999999888732 123655555 44412356 5677654 22345544
Q ss_pred e
Q 009800 215 E 215 (525)
Q Consensus 215 e 215 (525)
.
T Consensus 150 ~ 150 (293)
T 3d9w_A 150 R 150 (293)
T ss_dssp S
T ss_pred c
Confidence 3
No 20
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=64.02 E-value=14 Score=36.37 Aligned_cols=67 Identities=22% Similarity=0.204 Sum_probs=47.8
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----e---------CCCeeEEEEEeCCCCC--eEEeccCCCc--CC
Q 009800 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D---------FTDHVWTECFSQSLGR--WMHLDPCEGI--YD 209 (525)
Q Consensus 148 ~~Ll-~tR~GrCgE~A~~F~~l~RAlG~~aR~V~----d---------~~dHvW~EVy~~~~~r--WI~VDP~e~~--~D 209 (525)
.|++ ..|-|.|-|...+|..+|+++|++++.+. . ..+|.=.=|-.++ ++ | -||.--|. .-
T Consensus 59 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg-~~~~y-lvDVGFG~~~~~ 136 (280)
T 2vfb_A 59 DKLVDRRRGGYCYEHNGLIGYVLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTFPG-CQGPY-LVDVGFGGMTPT 136 (280)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECTTCCTTSCCCCSCEEEEEEECTT-CSSCE-EECSCSGGGCCS
T ss_pred HHHhcCCCceEhHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCCCcEEEEEEECC-eEEEE-EEecCCCccCcC
Confidence 4554 57789999999999999999999999862 1 1346656666665 36 8 57876554 35
Q ss_pred CCeeeec
Q 009800 210 RPLLYEK 216 (525)
Q Consensus 210 ~PllYe~ 216 (525)
.|+....
T Consensus 137 ~Pl~L~~ 143 (280)
T 2vfb_A 137 APLRLET 143 (280)
T ss_dssp SCEESCB
T ss_pred ceEEccC
Confidence 6776643
No 21
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=62.87 E-value=4.4 Score=40.01 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=46.9
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----e-C--------CCeeEEEEEeCCCCC--eEEeccCCCc--CC
Q 009800 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D-F--------TDHVWTECFSQSLGR--WMHLDPCEGI--YD 209 (525)
Q Consensus 148 ~~Ll-~tR~GrCgE~A~~F~~l~RAlG~~aR~V~----d-~--------~dHvW~EVy~~~~~r--WI~VDP~e~~--~D 209 (525)
.|++ ..|-|.|-|...+|..+|+++||+++.+. . . .+|.=.=|-.++ ++ | -||.--|. .-
T Consensus 62 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg-~~~~y-lvDVGFG~~~~~ 139 (278)
T 1w5r_A 62 AKLVDRRRGGYQYEHNGLLGYVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPG-ADGRY-LVDVGFGGQTLT 139 (278)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECTTCCTTCCCCCEEEEEEEEECSS-CSCCE-EECSCSCTTCCS
T ss_pred HHHhcCCCceehHHHHHHHHHHHHHcCCeEEEEEEEEeeCCCCCCCCCCCccEEEEEEECC-eEEEE-EEecCCCccCcC
Confidence 4554 57789999999999999999999999862 1 1 135545566655 35 7 57876554 35
Q ss_pred CCeeeec
Q 009800 210 RPLLYEK 216 (525)
Q Consensus 210 ~PllYe~ 216 (525)
.|+....
T Consensus 140 ~Pl~L~~ 146 (278)
T 1w5r_A 140 SPIRLEA 146 (278)
T ss_dssp SCEESCS
T ss_pred ceEEccC
Confidence 7776643
No 22
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=58.55 E-value=6.1 Score=39.95 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=40.8
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----eC--------CCeeEEEEEeCCCCCeEEeccCCCc
Q 009800 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----DF--------TDHVWTECFSQSLGRWMHLDPCEGI 207 (525)
Q Consensus 148 ~~Ll-~tR~GrCgE~A~~F~~l~RAlG~~aR~V~----d~--------~dHvW~EVy~~~~~rWI~VDP~e~~ 207 (525)
.|++ +.|-|.|-|...+|..+|+++||+++.+. .. .+|.=.=|-.++ ++| =||.--+.
T Consensus 88 ~KiV~~~RGGyC~ElN~lf~~~L~~lGf~v~~~~arV~~~~~~~~~~~~~H~~l~V~~~g-~~y-lvDVGFG~ 158 (309)
T 3lnb_A 88 EKLLIQKRGGLCYELNSLLYYFLMDCGFQVYKVAGTVYDLYDNKWKPDDGHVIIILHHNK-KDY-VIDAGFAS 158 (309)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECSTTCEEEEEEEETT-EEE-EECSCSTT
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHHcCCeEEEEeEEEecCCCCCCCCCCccEEEEEEECC-eEE-EEecCCCC
Confidence 4444 46788999999999999999999998883 21 246555555554 356 46766543
No 23
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=52.64 E-value=9.4 Score=28.88 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=25.0
Q ss_pred cCCCCCCCCCCcc-ccCCCCCChhhhccCCceEEEeeeCCCCccccc
Q 009800 96 NAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 141 (525)
Q Consensus 96 ~~P~C~~Cg~~t~-~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RF 141 (525)
..-+|+.||+... ..-...=++|| ...=-|.|..||..-||
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE-----~mT~Fy~C~~Cg~~w~~ 49 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADE-----PMTTFVVCNECGNRWKF 49 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSS-----CCEEEEEESSSCCEEEC
T ss_pred CccCCCCCCCCEEEEEEecCcCCCC-----CceEEEEcCCCCCeEEe
Confidence 4567999998643 21111112333 33447999999997766
No 24
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=49.52 E-value=5.7 Score=36.19 Aligned_cols=29 Identities=28% Similarity=0.616 Sum_probs=21.7
Q ss_pred cCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCccc
Q 009800 96 NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (525)
Q Consensus 96 ~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (525)
+-|+||.|+++-.+... ++|-|+.|+..-
T Consensus 26 ~lP~CP~C~seytYeDg---------------~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDG---------------ALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECS---------------SSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecC---------------CeEECCcccccc
Confidence 46999999998665421 268999999753
No 25
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=49.40 E-value=14 Score=34.18 Aligned_cols=73 Identities=22% Similarity=0.581 Sum_probs=44.8
Q ss_pred HHHHHHHHhhc-CeeecCCCCCC--CCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCcc
Q 009800 81 LLQLLFWFKQT-FRWVNAPPCDG--CSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 157 (525)
Q Consensus 81 l~~LL~WFK~~-F~wv~~P~C~~--Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~Gr 157 (525)
+++-+..+|.+ |-| |-|+. |+.+....+. ..|+|.+|+...-=|.
T Consensus 29 v~atI~~i~~d~~~Y---~aC~~~~CnKKv~~~~~---------------g~~~CekC~~~~~~~~-------------- 76 (181)
T 1l1o_C 29 SVATVVYLRKENCMY---QACPTQDCNKKVIDQQN---------------GLYRCEKCDTEFPNFK-------------- 76 (181)
T ss_dssp EEEEEEEECCSTTEE---EBCCSTTCCCBCEEETT---------------TEEEETTTTEEESSCC--------------
T ss_pred EEEEEEEEeCCCEEE---CCCCchhcCCccccCCC---------------CeEECCCCCCcCCCce--------------
Confidence 33444445554 433 67988 9987553321 1599999986532222
Q ss_pred chhhHHHHHHHHHHcCCCeEEEE-----eCCCeeEEEEEeCCCCCeEEecc
Q 009800 158 CGEWANCFTLYCRAFGYESRLIL-----DFTDHVWTECFSQSLGRWMHLDP 203 (525)
Q Consensus 158 CgE~A~~F~~l~RAlG~~aR~V~-----d~~dHvW~EVy~~~~~rWI~VDP 203 (525)
.||++ |.+.+.|+-+|.+.-..=++...
T Consensus 77 ------------------~ry~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA 109 (181)
T 1l1o_C 77 ------------------YRMILSVNIADFQENQWVTCFQESAEAILGQNA 109 (181)
T ss_dssp ------------------EEEEEEEEEECSSCEEEEEEEHHHHHHHHSSCH
T ss_pred ------------------EEEEEEEEEEeCCCCEEEEEEhHHHHHHhCCCH
Confidence 36774 68899999999875444444433
No 26
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.64 E-value=12 Score=37.96 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=11.1
Q ss_pred ceEEEeeeCCCCccc
Q 009800 125 ARVELFRCKVCSKIT 139 (525)
Q Consensus 125 ~rVE~y~C~~C~~~~ 139 (525)
..+.++.|..|++..
T Consensus 249 ~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 249 AVLRAETCPSCQGYL 263 (309)
T ss_dssp CSEEEEEETTTTEEE
T ss_pred cceEEEEcccccchH
Confidence 567777888888653
No 27
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=45.07 E-value=15 Score=36.00 Aligned_cols=45 Identities=18% Similarity=0.451 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCC
Q 009800 80 FLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYN 145 (525)
Q Consensus 80 ~l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn 145 (525)
...+|++|.++ +++ |+.||+++..... . ....|+.|+. +.|||..
T Consensus 96 ~a~~l~~w~~~-~~f-----C~~CG~~~~~~~~------------~--~~~~C~~C~~-~~yp~~~ 140 (269)
T 1vk6_A 96 RGVQLAEFYRS-HKY-----CGYCGHEMYPSKT------------E--WAMLCSHCRE-RYYPQIA 140 (269)
T ss_dssp HHHHHHHHHHT-TSB-----CTTTCCBEEECSS------------S--SCEEESSSSC-EECCCCE
T ss_pred HHHHHHhhhhc-CCc-----cccCCCcCccCCC------------c--eeeeCCCCCC-EecCCCC
Confidence 56788888865 332 9999998764311 0 1347999986 5678865
No 28
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=43.11 E-value=44 Score=33.81 Aligned_cols=43 Identities=14% Similarity=0.362 Sum_probs=28.7
Q ss_pred eecCCCCCCCCCCccc--cCCCCCChhhhccCCceEEEeeeCCCCcccccCCCC
Q 009800 94 WVNAPPCDGCSNETVG--QGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYN 145 (525)
Q Consensus 94 wv~~P~C~~Cg~~t~~--~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn 145 (525)
| +..-|+.||+.-.. +..+ ++.++--...|..|++.-+|+|..
T Consensus 180 ~-~~~~CPvCGs~P~~s~l~~~--------g~~~G~R~l~Cs~C~t~W~~~R~~ 224 (309)
T 2fiy_A 180 E-SRTLCPACGSPPMAGMIRQG--------GKETGLRYLSCSLCACEWHYVRIK 224 (309)
T ss_dssp T-TCSSCTTTCCCEEEEEEEC------------CCEEEEEETTTCCEEECCTTS
T ss_pred c-cCCCCCCCCCcCceeEEeec--------CCCCCcEEEEeCCCCCEEeecCcC
Confidence 5 56789999996432 2110 112444478999999999999964
No 29
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=41.77 E-value=12 Score=28.37 Aligned_cols=37 Identities=24% Similarity=0.473 Sum_probs=20.6
Q ss_pred CCCCCCCCCcccc-CCCCCChhhhccCCceEEEeeeCCCCccc
Q 009800 98 PPCDGCSNETVGQ-GMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (525)
Q Consensus 98 P~C~~Cg~~t~~~-g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (525)
-+|+.||...... -...-.+|| ...=-|.|.+||..-
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsade-----p~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDE-----PSTIFYKCTKCGHTW 53 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSC-----SSEEEEEESSSCCEE
T ss_pred eECCCCCCCEEEEEEeecccCCC-----CCcEEEEcCCCCCEe
Confidence 4699999864321 111112222 122469999999853
No 30
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.58 E-value=48 Score=31.18 Aligned_cols=14 Identities=29% Similarity=0.909 Sum_probs=12.1
Q ss_pred eeecCCCCCCCCCC
Q 009800 93 RWVNAPPCDGCSNE 106 (525)
Q Consensus 93 ~wv~~P~C~~Cg~~ 106 (525)
.|++...|..|+.+
T Consensus 157 ~W~~~~~C~~C~~~ 170 (220)
T 1dvp_A 157 NWADGRVCHRCRVE 170 (220)
T ss_dssp CCCCCSBCTTTCCB
T ss_pred cCCCCCccCCCCCc
Confidence 79988899999875
No 31
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=35.43 E-value=8.8 Score=26.99 Aligned_cols=16 Identities=13% Similarity=0.891 Sum_probs=12.1
Q ss_pred ceEEEeeeCCCCcccc
Q 009800 125 ARVELFRCKVCSKITR 140 (525)
Q Consensus 125 ~rVE~y~C~~C~~~~R 140 (525)
.+.+.|+|+.||..+.
T Consensus 2 k~~~fY~C~~CGnive 17 (36)
T 1dxg_A 2 NEGDVYKCELCGQVVK 17 (36)
T ss_dssp CTTCEEECTTTCCEEE
T ss_pred CcccEEEcCCCCcEEE
Confidence 3467899999987653
No 32
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.94 E-value=82 Score=29.92 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=39.9
Q ss_pred hhhHHHHHhhhhhhchhcCCHHHHHHHhccCCh--------HHH--HHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHh
Q 009800 20 SGQFEETVHPYISKVLMYEDPIRQEAAKKTVPV--------ERL--EEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFK 89 (525)
Q Consensus 20 ~~~f~~~l~s~~~~v~~YEd~~lq~~Al~~IPl--------~~L--~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~WFK 89 (525)
...|++.|..... .--++..+++++++|-- ..| ...+-..|...|-..|...+. + ..|.
T Consensus 86 s~~fl~~l~~l~~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~~-d-------amf~ 154 (226)
T 3zyq_A 86 NKQTMEELKDLLK---RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKES-D-------AMFA 154 (226)
T ss_dssp SHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHTCCCCCCCGG-G-------GCCC
T ss_pred cHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCCcccchhH-H-------Hhhh
Confidence 3667777766553 23466777777664421 000 111112344456544543322 1 1233
Q ss_pred hc-C-eeecCCCCCCCCCC
Q 009800 90 QT-F-RWVNAPPCDGCSNE 106 (525)
Q Consensus 90 ~~-F-~wv~~P~C~~Cg~~ 106 (525)
.. - .|++...|..|+.+
T Consensus 155 ~~~~p~W~~~~~C~~C~~~ 173 (226)
T 3zyq_A 155 AERAPDWVDAEECHRCRVQ 173 (226)
T ss_dssp CCCCCCCCCCSBCTTTCCB
T ss_pred cccccccccCCCCcCcCCC
Confidence 33 2 89999999999875
No 33
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=34.94 E-value=21 Score=32.78 Aligned_cols=116 Identities=13% Similarity=0.245 Sum_probs=68.3
Q ss_pred eeEeeccchhhhccccCCC--------chhhHHHHHHHHHHHHhhc-cCCCcccccccccCCCCchhHHHHhh----ccc
Q 009800 348 TTIYNAFSSVLSHFVENNV--------PKSGAIELLKILKGILGDL-KKSPYKTRRVSLNSVPNNGQKIVHQL----LPS 414 (525)
Q Consensus 348 ~~iY~a~~~~ls~~~~~~~--------~~~~a~~~~~~~r~~~~dl-k~~~f~~R~~~~~~~~~~~~~~~~~~----lps 414 (525)
++||++.++.|...+.... =.-....+.+.++....+- -+.=.-|=-++....+-+ .+.+.++ ||-
T Consensus 35 G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t-~eal~~~~~~~l~G 113 (178)
T 2pjk_A 35 EPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDIT-VETIRKLFDREIEG 113 (178)
T ss_dssp CCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCH-HHHHGGGCSEECHH
T ss_pred CeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcch-HHHHHHHhcccCcc
Confidence 4778877765555444331 1112233444454443220 111133333444444433 2344554 456
Q ss_pred HHHHHHhhcccc---cc---------C-CCCCeEEEecCCCccccchhh-HhHHHHHHHHHhcc
Q 009800 415 IGHLLRVLSLKS---EL---------N-TDGRVDIVLAGDPVKTSLSLP-VVFKALDDMIHDLN 464 (525)
Q Consensus 415 ~~~ll~~lslk~---~~---------~-~~g~~~~~~~~~p~~tsl~l~-~~~~~~~~~~~~~~ 464 (525)
++.++..+++|. -- + -+|...++|-|||+.+-+++- ++++.|..++..++
T Consensus 114 ~~~~~~~v~~~p~~~G~pa~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~~~~~~ 177 (178)
T 2pjk_A 114 FSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEVGHLVYLVR 177 (178)
T ss_dssp HHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hHHHhheeeccCCCCCCcchhheeEEEEECCEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788899999986 21 1 257799999999999999987 78888888877664
No 34
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=33.40 E-value=18 Score=36.02 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=19.5
Q ss_pred CCCCCCCCC-ccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009800 98 PPCDGCSNE-TVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (525)
Q Consensus 98 P~C~~Cg~~-t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (525)
--|+.||+. -...+...|-+| |.|..|+..
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaD-----------F~C~~C~Ee 65 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVAD-----------FYCNHCSEE 65 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCE-----------EECTTTCCE
T ss_pred CcCCCCCChhhhhccCCCcccc-----------cccCCcchh
Confidence 349999995 446666556555 999999864
No 35
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=30.37 E-value=55 Score=32.65 Aligned_cols=110 Identities=13% Similarity=0.186 Sum_probs=54.0
Q ss_pred CCCCCCCCCCccc---cCCC-----CCChhhh-ccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcC----ccchhhHH
Q 009800 97 APPCDGCSNETVG---QGMG-----TPLPSEI-QYGAARVELFRCKVCSKITRFPRYNDPLKLVETKR----GRCGEWAN 163 (525)
Q Consensus 97 ~P~C~~Cg~~t~~---~g~~-----~P~~~E~-~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~----GrCgE~A~ 163 (525)
...|+.||++... .|.. -..+++. .......++++|..|+....-+.. ++..++...- +.-..|..
T Consensus 12 ~~~C~~Cg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~~~-~~~~~y~~~y~~~~~~~~~~~~ 90 (416)
T 4e2x_A 12 PTACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEV-PRDLMFHEVYPYHSSGSSVMRE 90 (416)
T ss_dssp CEECTTTSCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESSCC-CHHHHSSTTCCCCGGGCHHHHH
T ss_pred CCcCCCCCCeeeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeecCcC-CHHHhccCCccCcCcCCHHHHH
Confidence 3469999998211 1211 1112222 234457899999999976554443 5665554211 22122222
Q ss_pred ----HHHHHHHHcCCC-eEEEEeC--CCeeEEEEEeCCCCCeEEeccCCCc
Q 009800 164 ----CFTLYCRAFGYE-SRLILDF--TDHVWTECFSQSLGRWMHLDPCEGI 207 (525)
Q Consensus 164 ----~F~~l~RAlG~~-aR~V~d~--~dHvW~EVy~~~~~rWI~VDP~e~~ 207 (525)
..-.+++.+++. ..-|+|. .+=.++........+.+++|+....
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~ 141 (416)
T 4e2x_A 91 HFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGV 141 (416)
T ss_dssp HHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHH
Confidence 223344556653 3355552 1111222222222367888987543
No 36
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=29.93 E-value=15 Score=32.24 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=15.5
Q ss_pred EEEeeeCCCCcccccCCC
Q 009800 127 VELFRCKVCSKITRFPRY 144 (525)
Q Consensus 127 VE~y~C~~C~~~~RFPRY 144 (525)
.=+|.|..||...|||--
T Consensus 92 ~vv~tCl~Cg~~kR~p~~ 109 (120)
T 1x0t_A 92 HVVITCLECGYIMRYPYL 109 (120)
T ss_dssp EEEEEETTTCCEEEEECC
T ss_pred EEEEECCCCCCEEEEccC
Confidence 467999999999999943
No 37
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.95 E-value=18 Score=27.35 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=17.1
Q ss_pred CCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009800 99 PCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (525)
Q Consensus 99 ~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (525)
-||.||+....... -+.+.|..||-.
T Consensus 21 ~CP~CG~~~fm~~~--------------~~R~~C~kCG~t 46 (50)
T 3j20_Y 21 FCPRCGPGVFMADH--------------GDRWACGKCGYT 46 (50)
T ss_dssp ECSSSCSSCEEEEC--------------SSEEECSSSCCE
T ss_pred cCCCCCCceEEecC--------------CCeEECCCCCCE
Confidence 48999986443311 146899999853
No 38
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=27.99 E-value=12 Score=31.73 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=22.4
Q ss_pred CCCCCCCCccccCCCCCChhhhccCC---ceEEEeeeCCCCcccc
Q 009800 99 PCDGCSNETVGQGMGTPLPSEIQYGA---ARVELFRCKVCSKITR 140 (525)
Q Consensus 99 ~C~~Cg~~t~~~g~~~P~~~E~~~ga---~rVE~y~C~~C~~~~R 140 (525)
.|+.||+.+...+.. +..-+..+.. ..|..+.|+.||...-
T Consensus 4 ~Cp~Cg~~~~~~~~~-~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIK-DIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEE-EEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceE-EEEEEECCEEEEECCCceeECCCCCCEee
Confidence 699999874322211 1111111111 2356899999998653
No 39
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.71 E-value=32 Score=28.89 Aligned_cols=27 Identities=19% Similarity=0.650 Sum_probs=17.9
Q ss_pred CCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009800 98 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (525)
Q Consensus 98 P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (525)
-.|+.||.....- ..|=+++|.+|+..
T Consensus 36 y~CpfCGk~~vkR--------------~a~GIW~C~kCg~~ 62 (83)
T 3j21_i 36 HTCPVCGRKAVKR--------------ISTGIWQCQKCGAT 62 (83)
T ss_dssp BCCSSSCSSCEEE--------------EETTEEEETTTCCE
T ss_pred cCCCCCCCceeEe--------------cCcCeEEcCCCCCE
Confidence 3599999864311 11237999999865
No 40
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=27.14 E-value=25 Score=32.92 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=49.3
Q ss_pred cccccCCCCchhHHHHhh----cccHHHHHHhhcccc-c---------cC-CCCCeEEEecCCCccccchhhHhHHHHHH
Q 009800 394 RVSLNSVPNNGQKIVHQL----LPSIGHLLRVLSLKS-E---------LN-TDGRVDIVLAGDPVKTSLSLPVVFKALDD 458 (525)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~----lps~~~ll~~lslk~-~---------~~-~~g~~~~~~~~~p~~tsl~l~~~~~~~~~ 458 (525)
=++....+-+ .+.+.++ +|-++.++..+++|. . .+ .+|...++|-|+|+..-.++-++++.|..
T Consensus 98 Gts~g~~D~t-~eal~~l~~~~l~G~~~~f~~v~~kpG~p~a~lsR~~~G~~~~~~V~~LPGnP~aa~~~~~~l~P~L~~ 176 (185)
T 3rfq_A 98 GTGVTPRDVT-PESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAH 176 (185)
T ss_dssp CCSSSTTCCH-HHHHHTTCSEECHHHHHHHHHHHHHTTCHHHHTCCCCEEEETTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccH-HHHHHHHhcccCccHHHHHHHHhcCCCCCceeeeehhhcccCCeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 3344444444 2344554 577888898888876 1 12 25678999999999999888888888888
Q ss_pred HHHhccc
Q 009800 459 MIHDLNN 465 (525)
Q Consensus 459 ~~~~~~~ 465 (525)
++..++.
T Consensus 177 ~~~~l~g 183 (185)
T 3rfq_A 177 IIGQLSS 183 (185)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 8776653
No 41
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.17 E-value=37 Score=29.04 Aligned_cols=27 Identities=30% Similarity=0.685 Sum_probs=18.0
Q ss_pred CCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCccc
Q 009800 99 PCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (525)
Q Consensus 99 ~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (525)
.|+.||.....- ..|=+++|.+|+...
T Consensus 38 ~CpfCgk~~vkR--------------~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 38 FCEFCGKFAVKR--------------KAVGIWGCKDCGKVK 64 (92)
T ss_dssp CCTTTCSSCBEE--------------EETTEEECSSSCCEE
T ss_pred cCcccCCCeeEe--------------cCcceEEcCCCCCEE
Confidence 599999864311 113379999998643
No 42
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=25.91 E-value=18 Score=31.95 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=16.6
Q ss_pred eEEEeeeCCCCcccccCCCC
Q 009800 126 RVELFRCKVCSKITRFPRYN 145 (525)
Q Consensus 126 rVE~y~C~~C~~~~RFPRYn 145 (525)
..=+|.|..||...|||--.
T Consensus 86 ~~vv~tCl~Cg~~kR~p~~~ 105 (123)
T 2k3r_A 86 PHIVVKCLECGHIMRYPYIK 105 (123)
T ss_dssp CEEEEEETTTTEEEEEECCC
T ss_pred cEEEEECCCCCCEEEEecCc
Confidence 35679999999999999743
No 43
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=24.82 E-value=38 Score=30.68 Aligned_cols=115 Identities=12% Similarity=0.187 Sum_probs=66.9
Q ss_pred eeEeeccchhhhccccCC---------CchhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhHHHHhh----ccc
Q 009800 348 TTIYNAFSSVLSHFVENN---------VPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQL----LPS 414 (525)
Q Consensus 348 ~~iY~a~~~~ls~~~~~~---------~~~~~a~~~~~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~~~~~~----lps 414 (525)
++||++.++.|...+... +.-. ..+.+.+++.+.+--+.=.-|==++....+-+ .+.+.++ +|-
T Consensus 22 G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd--~~i~~al~~a~~~~~DlVittGG~s~g~~D~t-~eal~~~~~~~lpG 98 (164)
T 3pzy_A 22 GEYEDRCGPIITEWLAQQGFSSAQPEVVADG--SPVGEALRKAIDDDVDVILTSGGTGIAPTDST-PDQTVAVVDYLIPG 98 (164)
T ss_dssp ----CCHHHHHHHHHHHTTCEECCCEEECSS--HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCH-HHHHHTTCSEECHH
T ss_pred CceeeHHHHHHHHHHHHCCCEEEEEEEeCCH--HHHHHHHHHHHhCCCCEEEECCCCCCCCCccH-HHHHHHHhcccCcc
Confidence 478888886665544332 1222 44555555544211121123333344444434 2344555 567
Q ss_pred HHHHHHhhcccccc---------C-CCCCeEEEecCCCccccchhhHhHHHHHHHHHhccc
Q 009800 415 IGHLLRVLSLKSEL---------N-TDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNN 465 (525)
Q Consensus 415 ~~~ll~~lslk~~~---------~-~~g~~~~~~~~~p~~tsl~l~~~~~~~~~~~~~~~~ 465 (525)
++.++...++|..= + .+|+..++|=|||+..-.++-++++.|..++..++.
T Consensus 99 ~~~~~~~~~~~~~p~a~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~v~P~l~~~~~~~~g 159 (164)
T 3pzy_A 99 LAEAIRRSGLPKVPTSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLGVLAGVLDHALDQLAG 159 (164)
T ss_dssp HHHHHHHTTTTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHhhccCCCCccccchhhhcccCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888887521 1 246799999999999888888888888888877754
No 44
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=24.52 E-value=30 Score=31.14 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=26.3
Q ss_pred CCCeEEEecCCCccccchhh-HhHHHHHHHHHhcc
Q 009800 431 DGRVDIVLAGDPVKTSLSLP-VVFKALDDMIHDLN 464 (525)
Q Consensus 431 ~g~~~~~~~~~p~~tsl~l~-~~~~~~~~~~~~~~ 464 (525)
+|...++|-|+|+..-..+- .+++.|..++..++
T Consensus 143 ~~~~i~~LPG~P~~~~~~~~~~v~P~L~h~~~~ir 177 (178)
T 3iwt_A 143 GKKIVYLLPGSPDAVKLALKELILPEVGHLVYLVR 177 (178)
T ss_dssp TTEEEEEECSCHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67789999999998877775 56677777776554
No 45
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.45 E-value=36 Score=27.91 Aligned_cols=27 Identities=26% Similarity=0.672 Sum_probs=17.5
Q ss_pred CCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009800 98 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (525)
Q Consensus 98 P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (525)
-.|+.||.....- ..|=+++|.+|+..
T Consensus 27 y~C~fCgk~~vkR--------------~a~GIW~C~~C~~~ 53 (72)
T 3jyw_9 27 YDCSFCGKKTVKR--------------GAAGIWTCSCCKKT 53 (72)
T ss_dssp BCCSSCCSSCBSB--------------CSSSCBCCSSSCCC
T ss_pred ccCCCCCCceeEe--------------cCCCeEECCCCCCE
Confidence 3599999864311 11337899999864
No 46
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=23.40 E-value=42 Score=28.68 Aligned_cols=27 Identities=26% Similarity=0.672 Sum_probs=17.6
Q ss_pred CCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009800 98 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (525)
Q Consensus 98 P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (525)
-.|+.||.....- ..|=+++|.+|+..
T Consensus 37 y~CpfCgk~~vkR--------------~a~GIW~C~~C~~~ 63 (92)
T 3izc_m 37 YDCSFCGKKTVKR--------------GAAGIWTCSCCKKT 63 (92)
T ss_dssp CCCSSSCSSCCEE--------------EETTEEECTTTCCE
T ss_pred CcCCCCCCceeee--------------cccceEEcCCCCCE
Confidence 3599999864311 11337999999864
No 47
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=22.90 E-value=39 Score=33.94 Aligned_cols=33 Identities=27% Similarity=0.656 Sum_probs=19.9
Q ss_pred cCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009800 96 NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (525)
Q Consensus 96 ~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (525)
...||+.||......-.+ ..+|. .|.|+.|++.
T Consensus 250 gR~pC~~CGt~I~~~~~g---------~~gRs-TyfCp~~~~~ 282 (287)
T 3w0f_A 250 KRPNCDQCHSKITVCRFG---------ENSRM-TYFCPHCQKH 282 (287)
T ss_dssp TCSBCTTTCCBCEEECSS---------TTCCC-EEECTTTSCC
T ss_pred CCCCCCCCCCEEEEEEec---------CCCCC-EEECCCcccc
Confidence 455899999864422111 01232 4999999863
No 48
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=21.09 E-value=28 Score=32.47 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchh
Q 009800 81 LLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGE 160 (525)
Q Consensus 81 l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~GrCgE 160 (525)
+++-+...|.+-.|+- |-|+.|..+....+. ..|+|.+|+.. .=|
T Consensus 27 v~atI~~Ik~d~~~~Y-~ACp~CnKKV~~~~~---------------g~~~CekC~~~-~~~------------------ 71 (172)
T 3u50_C 27 VYGNLVSIQMKNKLYY-YRCTCQGKSVLKYHG---------------DSFFCESCQQF-INP------------------ 71 (172)
T ss_dssp EEEEEECCCCSSCCEE-EECTTSCCCEEEETT---------------TEEEETTTTEE-CCC------------------
T ss_pred EEEEEEEEcCCCcEEe-hhchhhCCEeeeCCC---------------CeEECCCCCCC-CCc------------------
Confidence 4444444454423333 669999887653321 16999999986 322
Q ss_pred hHHHHHHHHHHcCCCeEEEE-----eCCCeeEEEEEeCCCCCeEEe
Q 009800 161 WANCFTLYCRAFGYESRLIL-----DFTDHVWTECFSQSLGRWMHL 201 (525)
Q Consensus 161 ~A~~F~~l~RAlG~~aR~V~-----d~~dHvW~EVy~~~~~rWI~V 201 (525)
..||++ |.+++.|+-+|.+....-++.
T Consensus 72 --------------~~RYil~~~i~D~TG~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 72 --------------QVHLMLRAFVQDSTGTIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp --------------EEEECEEEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred --------------eEEEEEEEEEEeCCCCEEEEEEhHHHHHHhCC
Confidence 245653 688999999997654444444
No 49
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.97 E-value=39 Score=32.14 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=20.9
Q ss_pred eecCCCCCCCCCCcc-ccCCCCCChhhhccCCceEEEeeeCCCCcccccC
Q 009800 94 WVNAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRFP 142 (525)
Q Consensus 94 wv~~P~C~~Cg~~t~-~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFP 142 (525)
|...-+||.||+... .+- + .| -+.|.+||....++
T Consensus 11 ~~~~~~CP~Cg~~d~~~~~------~---dg-----~~~C~~Cg~~~~~~ 46 (255)
T 1nui_A 11 FLYHIPCDNCGSSDGNSLF------S---DG-----HTFCYVCEKWTAGN 46 (255)
T ss_dssp EEEEECCSSSCCSSCEEEE------T---TS-----CEEETTTCCEEC--
T ss_pred eecCCcCCCCCCCCCceEe------C---CC-----CeecccCCCcCCCc
Confidence 344568999998532 111 0 12 28999999865443
No 50
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.72 E-value=53 Score=25.19 Aligned_cols=29 Identities=14% Similarity=0.378 Sum_probs=19.4
Q ss_pred CCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCccc
Q 009800 97 APPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (525)
Q Consensus 97 ~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (525)
..-||.||+...... .-+.|.|.+|+-..
T Consensus 18 ~~fCPkCG~~~~ma~--------------~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAE--------------HADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEE--------------CSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEec--------------cCCEEECCCCCCEE
Confidence 466999998553221 11378999998753
No 51
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=20.53 E-value=38 Score=29.54 Aligned_cols=27 Identities=37% Similarity=0.787 Sum_probs=17.3
Q ss_pred CCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCccc
Q 009800 99 PCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (525)
Q Consensus 99 ~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (525)
.|+.||.....- ..|=+++|.+|+...
T Consensus 38 ~CpfCgk~~vKR--------------~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 38 GCPFCGKVAVKR--------------AAVGIWKCKPCKKII 64 (103)
T ss_dssp ECTTTCCEEEEE--------------EETTEEEETTTTEEE
T ss_pred CCCCCCCceeee--------------cCcceEEcCCCCCEE
Confidence 399999854311 112379999998643
No 52
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=20.33 E-value=52 Score=29.40 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=9.7
Q ss_pred HHHHHHHhhcC
Q 009800 82 LQLLFWFKQTF 92 (525)
Q Consensus 82 ~~LL~WFK~~F 92 (525)
.|+|+|||.+|
T Consensus 99 lEFlQWfkkf~ 109 (127)
T 2qjx_A 99 LEFLQWLKKHW 109 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 49999999986
No 53
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=20.19 E-value=56 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=17.5
Q ss_pred eeecCCCCCCCCCCccccCCCCCChhh
Q 009800 93 RWVNAPPCDGCSNETVGQGMGTPLPSE 119 (525)
Q Consensus 93 ~wv~~P~C~~Cg~~t~~~g~~~P~~~E 119 (525)
.|+.+..|+.||++|...-...=+|||
T Consensus 13 ~YTLk~~CP~CG~~t~~ahParfSP~D 39 (60)
T 2aus_D 13 RYTLKETCPVCGEKTKVAHPPRFSPED 39 (60)
T ss_dssp CEESSSBCTTTCSBCEESSCCCCCSCC
T ss_pred CEEccccCcCCCCccCCCCCCCCCCCC
Confidence 567778888888887755433334444
Done!