BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009801
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus
C5321 From Cft073 E.Coli Strain
Length = 490
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 143/314 (45%), Gaps = 40/314 (12%)
Query: 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVE 296
A KG A +G+ Y+ G G++ D+ +++ WF AA++G + +G+ Y G GV
Sbjct: 106 ALKGLPQAQQNLGVMYHEG-NGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164
Query: 297 RNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHY 356
R+Y A EW + AA Q + N +GY+Y +G GVE+ + A+ Y + A +E G
Sbjct: 165 RDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDEL-GQL 223
Query: 357 NLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416
+L MYY GIGV +D + F +A G+ A ++L + G+ K A Y+
Sbjct: 224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYR 283
Query: 417 LVAERGPWSSLSRWALESYLKGDVG------KAFLLYSRMAELGYEVAQSNAAWILDKYG 470
AE+G S + Y KG G +A Y++ AE G AQ+N I + G
Sbjct: 284 KSAEQGN-SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342
Query: 471 E--------------------------GSMCMGESGFCTDAERHQCAHSLWW-QASEQGN 503
G+ + G D ++ ++W +A+EQG
Sbjct: 343 SEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQ----AAIWMRKAAEQGL 398
Query: 504 EHAALLIGDAYYYG 517
A + +G+ YYYG
Sbjct: 399 SAAQVQLGEIYYYG 412
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 129/242 (53%), Gaps = 10/242 (4%)
Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG 292
L+ +A+ G A A ++G + YF +D T+A+ WF +AA++G + LG Y G
Sbjct: 30 LKQKAESGEAKAQLELG-YRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNG 88
Query: 293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA 352
GV ++Y +A+ W AA + L A +G +Y +G GV K + ++ ++F AA+
Sbjct: 89 EGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGV-KVDKAESVKWFRLAAEQGRD 147
Query: 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMAT 412
G ++G Y++G GV RD +A +++ AA G+ + QL M+ G+G+++N ++
Sbjct: 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207
Query: 413 ALYKLVAERGPWSSLSRWAL-ESYLKG-----DVGKAFLLYSRMAELGYEVAQSNAAWIL 466
Y+ A G L + L + Y G D ++ +L+S+ AE G +AQ +IL
Sbjct: 208 QWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265
Query: 467 DK 468
++
Sbjct: 266 EQ 267
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 146/325 (44%), Gaps = 30/325 (9%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHD 177
AA++G P A+ LG +Y G + +K ++ + AAE G + ++ Y D
Sbjct: 105 AALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164
Query: 178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA----LRKSRGEDDEAFQI- 232
+ + E A + + + G E N RKS DE Q+
Sbjct: 165 RDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLH 224
Query: 233 ---------------------LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFS 271
A++GN+ A +++G GL G + + KAL W+
Sbjct: 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAK-EPLKALEWYR 283
Query: 272 KAADKGEPQSMEFLGEIYARGA-GVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYG 330
K+A++G +L +Y +GA GV +N +A+ W T +A Q +A +G +Y + G
Sbjct: 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFR-LG 342
Query: 331 VEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKA 390
E++ + KA E+F KAA E +NLG +G GVK+D + A + AA G A
Sbjct: 343 SEEE-HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAA 401
Query: 391 FYQLAKMFHTGVGLKKNLHMATALY 415
QL ++++ G+G++++ A A +
Sbjct: 402 QVQLGEIYYYGLGVERDYVQAWAWF 426
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 137/275 (49%), Gaps = 28/275 (10%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTY-----LR 172
AA +G+ + + LG++Y G+ ERN + ++ +A G+ ++ +A Y +
Sbjct: 177 AAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVT 236
Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL---RKSRGEDDEA 229
QD V L+++ AE NS + ++E + GA+E AL RKS
Sbjct: 237 QDYTQSRV-LFSQSAEQG-NSIAQFRLGYILE--QGLAGAKEPLKALEWYRKS------- 285
Query: 230 FQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIY 289
A++GN+ Y + Y G G+ ++R +A+ W++K+A++G+ + LG IY
Sbjct: 286 -------AEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIY 338
Query: 290 ARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349
R G E + KA+EW AA + +A +G ++G GV KK+ +A + KAA+
Sbjct: 339 FR-LGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGV-KKDEQQAAIWMRKAAEQ 396
Query: 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384
+ LG +YY G+GV+RD A +F A+
Sbjct: 397 GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 29/226 (12%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHD 177
+A +G+ A+ LG++ G+ + KA ++ +AE GN + +A+ Y D
Sbjct: 249 SAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY------D 302
Query: 178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY-- 235
K + A+ E A++ + S + A+ N GA+ G ++E + +E+
Sbjct: 303 KGAEGVAKNREQAISWYTKSAEQG-------DATAQANLGAIYFRLGSEEEHKKAVEWFR 355
Query: 236 -QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAG 294
A KG A + +G G +G+++D +A +W KAA++G + LGEIY G G
Sbjct: 356 KAAAKGEKAAQFNLGNALLQG-KGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLG 414
Query: 295 VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAK 340
VER+Y +A W A+ + +G E +N T+ K
Sbjct: 415 VERDYVQAWAWFDTASTNDM------------NLFGTENRNITEKK 448
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 50/199 (25%)
Query: 76 FEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYG 135
+ S + G +G YY+ + + G + E+A S +A +GD A++ LG +Y
Sbjct: 282 YRKSAEQGNSDGQYYL--AHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIY- 338
Query: 136 MGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL 195
+ ++ H KAV+ + + A +
Sbjct: 339 --------------------------------FRLGSEEEHKKAVEWFRKAAAKGEKAAQ 366
Query: 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFG 255
+ + +++ + ++ +RK+ A++G + A ++G YY+G
Sbjct: 367 FNLGNALLQGKGVKKDEQQAAIWMRKA--------------AEQGLSAAQVQLGEIYYYG 412
Query: 256 LRGLRRDRTKALMWFSKAA 274
L G+ RD +A WF A+
Sbjct: 413 L-GVERDYVQAWAWFDTAS 430
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 3/182 (1%)
Query: 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERN 298
K N+G + +G+ YY G +G+ ++ KA +++KA D LG +Y G GV +N
Sbjct: 36 KENSGC-FNLGVLYYQG-QGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQN 93
Query: 299 YTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL 358
KAL++ + A + +G +Y G V +++ KA EYF KA D + G L
Sbjct: 94 TNKALQYYSKACDLKYAEGCASLGGIYHDGK-VVTRDFKKAVEYFTKACDLNDGDGCTIL 152
Query: 359 GVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418
G +Y G G +D+K A + A + + M+H G G KN A A Y
Sbjct: 153 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212
Query: 419 AE 420
E
Sbjct: 213 CE 214
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 76/155 (49%), Gaps = 1/155 (0%)
Query: 261 RDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNG 320
+D T+A +F KA D E LG +Y +G GVE+N KA + A + +
Sbjct: 20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79
Query: 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFL 380
+G LY G GV +N KA +Y+ KA D + A G +LG +Y+ G V RD K A +YF
Sbjct: 80 LGNLYYSGQGVS-QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138
Query: 381 VAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY 415
A + L ++ G G K+L A A Y
Sbjct: 139 KACDLNDGDGCTILGSLYDAGRGTPKDLKKALASY 173
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 2/169 (1%)
Query: 248 IGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307
+G YY G +G+ ++ KAL ++SKA D + LG IY G V R++ KA+E+ T
Sbjct: 80 LGNLYYSG-QGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138
Query: 308 HAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIG 367
A +G LY G G K + KA ++KA D +++ G +N G MY+ G G
Sbjct: 139 KACDLNDGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLKDSPGCFNAGNMYHHGEG 197
Query: 368 VKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416
++ K A + A + + L M + G G+ +N A +K
Sbjct: 198 ATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFK 246
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 56/84 (66%)
Query: 332 EKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAF 391
++K++T+AK+YFEKA D +E G +NLGV+YY+G GV++++K A ++ A + +
Sbjct: 18 KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC 77
Query: 392 YQLAKMFHTGVGLKKNLHMATALY 415
+ L ++++G G+ +N + A Y
Sbjct: 78 HLLGNLYYSGQGVSQNTNKALQYY 101
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355
E+++T+A ++ A + S +G LY +G GVE KN KA ++ KA D + G
Sbjct: 19 EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLNYSNGC 77
Query: 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMAT 412
+ LG +YY G GV ++ A +Y+ A + + + L ++H G + ++ A
Sbjct: 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAV 134
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
Length = 138
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 13/135 (9%)
Query: 259 LRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVER---NYTKALEWLTHAARQQLY 315
+++D KA+ ++ KA + L E++ + V N K ++L+ A
Sbjct: 7 VKKDLKKAIQYYVKACE---------LNEMFGCLSLVSNSQINKQKLFQYLSKACELNSG 57
Query: 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLA 375
+ +G Y G V KK+ KA +Y+ KA + G LG Y G GV ++ K A
Sbjct: 58 NGCRFLGDFYENGKYV-KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
Query: 376 CKYFLVAANAGHQKA 390
K F A G + A
Sbjct: 117 VKTFEKACRLGSEDA 131
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 230 FQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIY 289
FQ L + + +G FY G + +++D KA ++SKA + LG
Sbjct: 45 FQYLSKACELNSGNGCRFLGDFYENG-KYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQ 103
Query: 290 ARGAGVERNYTKALEWLTHAAR 311
G GV +N +A++ A R
Sbjct: 104 YAGKGVVKNEKQAVKTFEKACR 125
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%)
Query: 335 NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQL 394
N K +Y KA + G LG Y G VK+D++ A +Y+ A Q L
Sbjct: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
Query: 395 AKMFHTGVGLKKNLHMATALYKLVAERGP 423
+ G G+ KN A ++ G
Sbjct: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLGS 128
>pdb|3UW3|A Chain A, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
pdb|3UW3|B Chain B, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
Length = 377
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFL---YGMGMM 139
G +NG+ ++ SA+ + D RV+ + + G P A S++ ++ G GM
Sbjct: 183 GTLNGAVAAQLADPASAILDIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNGMS 242
Query: 140 RERNKGKA----FLYHHFAAEGGNIQ-SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194
RE KG A L E G++ + V +R +KL ++ +N
Sbjct: 243 REEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGAMRCHSQALTIKLKKDVPLDEINGI 302
Query: 195 LISKD 199
L S +
Sbjct: 303 LASAN 307
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 335 NYTKAKEYFEKAA--DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA--ANAGHQKA 390
+Y +A EY++KA D A YNLG YYK + D A +Y+ A + +A
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEA 71
Query: 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALES--YLKGDVGKAFLLYS 448
+Y L ++ + + A Y+ E P S+ + + L + Y +GD +A Y
Sbjct: 72 WYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Query: 449 RMAEL 453
+ EL
Sbjct: 128 KALEL 132
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Query: 262 DRTKALMWFSKAADKGEPQSMEFL--GEIYARGAGVERN---YTKALEWLTHAARQQLYS 316
D KA F+KA ++ + ++ ++ + + +ER Y KALE + AA +
Sbjct: 38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA-----T 92
Query: 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKA--ADNEEAGGHYNLGVMYYK 364
AY G G +YV K+ Y +AK+ FEKA A E Y LG + K
Sbjct: 93 AYYGAGNVYVV-----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK 137
>pdb|1U7N|A Chain A, Crystal Structure Of The Fatty AcidPHOSPHOLIPID SYNTHESIS
Protein Plsx From Enterococcus Faecalis V583
pdb|1U7N|B Chain B, Crystal Structure Of The Fatty AcidPHOSPHOLIPID SYNTHESIS
Protein Plsx From Enterococcus Faecalis V583
Length = 336
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 47/137 (34%), Gaps = 21/137 (15%)
Query: 154 AAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA-------------VNSFLISKDS 200
A G N + +QD D +LY + AEI + + S D
Sbjct: 10 AXGGDNAPQAIVEGVXLAKQDFPDIEFQLYGKEAEIKKYITDEKNITIIHTDEKIASDDE 69
Query: 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260
PV + IR A A GE D F GN GA+ GLF ++ +
Sbjct: 70 PV-KAIRRKKTASXVLAAQAVKNGEADAIFS-------AGNTGALLAAGLFIVGRIKNVE 121
Query: 261 RDRTKALMWFSKAADKG 277
R + + DKG
Sbjct: 122 RPGLXSTLPVXGEPDKG 138
>pdb|2JGJ|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 535
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 246 YKIGLFYYFGLRGLRR--------DRTKALMWFSK--AADKGEPQSMEFLGEIYARGAGV 295
Y++G F + L G R D+ AL W + AA G+P S+ GE A A V
Sbjct: 148 YRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGEXXAGAASV 207
>pdb|3DL7|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 534
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 246 YKIGLFYYFGLRGLRR--------DRTKALMWFSK--AADKGEPQSMEFLGEIYARGAGV 295
Y++G F + L G R D+ AL W + AA G+P S+ GE A A V
Sbjct: 148 YRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGEXXAGAASV 207
>pdb|3DL7|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 538
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 246 YKIGLFYYFGLRGLRR--------DRTKALMWFSK--AADKGEPQSMEFLGEIYARGAGV 295
Y++G F + L G R D+ AL W + AA G+P S+ GE A A V
Sbjct: 151 YRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGEXXAGAASV 210
>pdb|2JGE|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
pdb|2JGJ|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 536
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 246 YKIGLFYYFGLRGLRR--------DRTKALMWFSK--AADKGEPQSMEFLGEIYARGAGV 295
Y++G F + L G R D+ AL W + AA G+P S+ GE A A V
Sbjct: 151 YRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGEXXAGAASV 210
>pdb|2JGE|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
Length = 533
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 246 YKIGLFYYFGLRGLRR--------DRTKALMWFSK--AADKGEPQSMEFLGEIYARGAGV 295
Y++G F + L G R D+ AL W + AA G+P S+ GE A A V
Sbjct: 148 YRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGEXXAGAASV 207
>pdb|3E4B|A Chain A, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|B Chain B, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|C Chain C, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|D Chain D, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
Length = 452
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 248 IGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307
+G YY G + + D A F KA + E + +LG+IY RG + KAL+ L
Sbjct: 289 LGKLYYEG-KWVPADAKAAEAHFEKAVGR-EVAADYYLGQIYRRGYLGKVYPQKALDHLL 346
Query: 308 HAARQQLYSAYNGIGYLYVKGYGVE 332
AAR SA I L+ +G G +
Sbjct: 347 TAARNGQNSADFAIAQLFSQGKGTK 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,633,936
Number of Sequences: 62578
Number of extensions: 644901
Number of successful extensions: 1262
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 44
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)