Query 009801
Match_columns 525
No_of_seqs 353 out of 3260
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 17:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3E-34 6.6E-39 273.9 28.6 365 85-514 116-500 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 4.4E-34 9.6E-39 272.8 26.3 386 66-516 61-468 (966)
3 KOG1550 Extracellular protein 100.0 6.6E-28 1.4E-32 246.8 31.0 392 109-522 108-524 (552)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-25 4.1E-30 247.6 41.9 404 66-520 444-886 (899)
5 TIGR00990 3a0801s09 mitochondr 100.0 3.9E-25 8.5E-30 232.9 41.8 369 85-502 127-572 (615)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-24 2.4E-29 241.5 42.5 401 65-515 409-848 (899)
7 TIGR00990 3a0801s09 mitochondr 99.9 7.6E-24 1.6E-28 223.1 41.5 338 124-515 127-553 (615)
8 KOG1550 Extracellular protein 99.9 6.3E-25 1.4E-29 224.9 27.8 394 108-523 72-490 (552)
9 PRK11447 cellulose synthase su 99.9 1.2E-23 2.5E-28 235.7 38.3 385 65-500 281-739 (1157)
10 PRK11447 cellulose synthase su 99.9 2E-22 4.3E-27 225.9 43.3 352 105-515 282-722 (1157)
11 KOG2002 TPR-containing nuclear 99.9 4.5E-22 9.7E-27 200.7 34.1 396 68-516 214-728 (1018)
12 PRK15174 Vi polysaccharide exp 99.9 5.8E-21 1.3E-25 200.8 40.7 306 105-453 55-381 (656)
13 KOG2002 TPR-containing nuclear 99.9 1.9E-21 4.2E-26 196.1 31.9 364 63-466 174-574 (1018)
14 PRK15174 Vi polysaccharide exp 99.9 4.3E-21 9.4E-26 201.7 35.3 339 63-451 52-418 (656)
15 PRK10049 pgaA outer membrane p 99.9 3.8E-19 8.2E-24 191.0 37.5 384 67-514 29-470 (765)
16 PRK10049 pgaA outer membrane p 99.9 5.8E-19 1.3E-23 189.6 38.5 358 105-519 28-441 (765)
17 COG0790 FOG: TPR repeat, SEL1 99.8 4.8E-19 1E-23 169.4 26.0 204 222-427 53-272 (292)
18 COG0790 FOG: TPR repeat, SEL1 99.8 1.1E-18 2.4E-23 166.9 26.2 204 258-463 52-276 (292)
19 PRK09782 bacteriophage N4 rece 99.8 2.7E-17 5.8E-22 177.2 39.3 353 106-515 356-755 (987)
20 PRK09782 bacteriophage N4 rece 99.8 4.4E-17 9.4E-22 175.6 40.9 352 105-514 326-721 (987)
21 PRK11788 tetratricopeptide rep 99.8 3.1E-17 6.6E-22 164.1 34.0 288 85-453 35-347 (389)
22 KOG1155 Anaphase-promoting com 99.8 3.3E-16 7.1E-21 146.6 33.2 319 122-501 162-536 (559)
23 PRK11788 tetratricopeptide rep 99.8 1.7E-16 3.8E-21 158.7 34.3 290 160-501 35-347 (389)
24 KOG2003 TPR repeat-containing 99.8 1.2E-16 2.6E-21 148.8 26.2 84 105-192 214-308 (840)
25 KOG0547 Translocase of outer m 99.8 2E-15 4.2E-20 142.3 34.3 356 105-502 128-567 (606)
26 KOG1126 DNA-binding cell divis 99.8 8.1E-17 1.8E-21 157.5 24.3 274 142-502 333-621 (638)
27 KOG1155 Anaphase-promoting com 99.8 1.3E-15 2.8E-20 142.6 30.3 318 159-515 163-518 (559)
28 KOG1126 DNA-binding cell divis 99.7 9E-16 1.9E-20 150.3 26.2 280 105-459 332-626 (638)
29 KOG1173 Anaphase-promoting com 99.7 2.4E-14 5.2E-19 137.6 31.4 206 277-515 310-534 (611)
30 KOG2003 TPR repeat-containing 99.7 1.7E-15 3.6E-20 141.3 22.2 343 125-515 202-671 (840)
31 PLN03218 maturation of RBCL 1; 99.7 5.8E-13 1.3E-17 145.0 44.6 309 141-502 450-784 (1060)
32 KOG0547 Translocase of outer m 99.7 1.9E-14 4.2E-19 135.7 28.5 356 63-453 125-566 (606)
33 PRK14574 hmsH outer membrane p 99.7 1.1E-13 2.5E-18 146.4 37.8 389 64-515 45-495 (822)
34 PRK14574 hmsH outer membrane p 99.7 2.3E-14 5E-19 151.7 32.0 345 65-453 80-513 (822)
35 PLN03218 maturation of RBCL 1; 99.7 3.4E-12 7.4E-17 139.0 46.6 340 105-502 383-749 (1060)
36 PF13429 TPR_15: Tetratricopep 99.7 8.8E-16 1.9E-20 145.8 14.2 224 238-500 40-276 (280)
37 PF13429 TPR_15: Tetratricopep 99.7 7.8E-16 1.7E-20 146.2 13.2 248 128-418 12-274 (280)
38 PLN03081 pentatricopeptide (PP 99.7 2.4E-13 5.2E-18 145.8 33.5 398 66-515 100-539 (697)
39 PLN03081 pentatricopeptide (PP 99.7 2.1E-13 4.5E-18 146.3 32.5 335 105-502 171-558 (697)
40 KOG2076 RNA polymerase III tra 99.7 4.7E-13 1E-17 135.4 32.5 305 105-451 152-510 (895)
41 PRK12370 invasion protein regu 99.7 1.2E-13 2.6E-18 143.3 29.5 256 127-456 261-538 (553)
42 PRK12370 invasion protein regu 99.7 9.5E-14 2.1E-18 144.0 28.7 217 173-452 274-501 (553)
43 KOG4014 Uncharacterized conser 99.6 2.4E-14 5.2E-19 117.7 16.9 180 238-421 30-233 (248)
44 KOG1129 TPR repeat-containing 99.6 1.2E-14 2.7E-19 130.3 14.3 233 214-468 227-475 (478)
45 KOG1173 Anaphase-promoting com 99.6 1.6E-12 3.4E-17 125.3 29.2 339 83-466 139-533 (611)
46 PRK10747 putative protoheme IX 99.6 8.8E-12 1.9E-16 124.0 34.9 210 220-453 163-390 (398)
47 TIGR00540 hemY_coli hemY prote 99.6 4.5E-12 9.9E-17 126.8 32.4 276 141-453 97-399 (409)
48 PRK11189 lipoprotein NlpI; Pro 99.6 7.2E-13 1.6E-17 126.2 25.4 207 262-502 41-266 (296)
49 PRK11189 lipoprotein NlpI; Pro 99.6 9.1E-13 2E-17 125.5 25.9 77 106-186 40-124 (296)
50 KOG1129 TPR repeat-containing 99.6 4E-14 8.7E-19 127.1 14.8 231 128-432 227-471 (478)
51 TIGR02521 type_IV_pilW type IV 99.6 2E-12 4.3E-17 119.1 26.1 188 279-499 31-230 (234)
52 TIGR02521 type_IV_pilW type IV 99.6 2E-12 4.3E-17 119.1 26.0 191 240-452 29-231 (234)
53 PLN03077 Protein ECB2; Provisi 99.6 6.7E-12 1.5E-16 138.0 34.0 381 67-515 267-702 (857)
54 KOG1840 Kinesin light chain [C 99.6 9E-13 1.9E-17 130.7 23.3 237 125-452 200-478 (508)
55 TIGR00540 hemY_coli hemY prote 99.6 2.6E-11 5.7E-16 121.3 33.9 283 164-500 88-398 (409)
56 PRK10747 putative protoheme IX 99.5 6.1E-11 1.3E-15 118.0 34.9 285 127-501 87-390 (398)
57 PLN03077 Protein ECB2; Provisi 99.5 2.7E-11 5.9E-16 133.2 35.4 205 262-501 504-720 (857)
58 KOG2076 RNA polymerase III tra 99.5 6.1E-11 1.3E-15 120.4 34.4 51 141-191 152-204 (895)
59 KOG0548 Molecular co-chaperone 99.5 3.7E-11 8.1E-16 115.5 30.7 396 66-516 15-472 (539)
60 KOG1840 Kinesin light chain [C 99.5 3.2E-12 7E-17 126.8 23.7 227 161-471 200-465 (508)
61 KOG1125 TPR repeat-containing 99.5 1.2E-12 2.7E-17 126.5 19.1 222 215-453 290-527 (579)
62 COG2956 Predicted N-acetylgluc 99.5 7.8E-11 1.7E-15 106.2 27.7 255 88-423 38-313 (389)
63 KOG1125 TPR repeat-containing 99.5 3.9E-12 8.4E-17 123.1 20.6 224 165-422 290-528 (579)
64 KOG1130 Predicted G-alpha GTPa 99.5 1.4E-12 3.1E-17 120.7 16.6 250 218-500 25-343 (639)
65 KOG1130 Predicted G-alpha GTPa 99.5 1.1E-12 2.4E-17 121.4 14.9 270 105-438 30-369 (639)
66 KOG4014 Uncharacterized conser 99.5 8.5E-12 1.8E-16 102.9 18.1 199 82-348 31-232 (248)
67 COG3063 PilF Tfp pilus assembl 99.4 4.2E-11 9.2E-16 103.2 21.8 189 242-452 35-235 (250)
68 COG3063 PilF Tfp pilus assembl 99.4 5.3E-11 1.2E-15 102.6 21.6 160 279-455 35-204 (250)
69 KOG0624 dsRNA-activated protei 99.4 2.4E-10 5.3E-15 103.8 26.4 317 83-454 36-371 (504)
70 COG2956 Predicted N-acetylgluc 99.4 7.7E-10 1.7E-14 99.9 29.3 253 163-453 38-311 (389)
71 KOG1174 Anaphase-promoting com 99.4 1.6E-09 3.4E-14 101.0 31.6 341 121-502 94-501 (564)
72 KOG1127 TPR repeat-containing 99.4 2.6E-10 5.6E-15 116.6 28.1 353 105-502 471-880 (1238)
73 KOG0624 dsRNA-activated protei 99.3 4.6E-09 9.9E-14 95.6 29.1 302 122-502 36-371 (504)
74 KOG4162 Predicted calmodulin-b 99.3 1.5E-08 3.3E-13 101.6 32.9 356 105-502 336-784 (799)
75 KOG0495 HAT repeat protein [RN 99.3 5.6E-08 1.2E-12 95.8 35.8 305 163-522 519-868 (913)
76 cd05804 StaR_like StaR_like; a 99.3 1.5E-08 3.2E-13 100.0 32.6 298 120-501 2-336 (355)
77 KOG4162 Predicted calmodulin-b 99.3 6.3E-09 1.4E-13 104.3 28.6 321 84-453 432-783 (799)
78 KOG0548 Molecular co-chaperone 99.3 1.8E-08 4E-13 97.3 30.3 367 105-515 15-437 (539)
79 KOG1156 N-terminal acetyltrans 99.3 6.5E-08 1.4E-12 95.4 33.5 354 80-502 36-469 (700)
80 KOG1174 Anaphase-promoting com 99.2 2.3E-08 5.1E-13 93.3 28.5 261 157-454 229-501 (564)
81 KOG1127 TPR repeat-containing 99.2 4.4E-09 9.5E-14 107.9 25.8 357 69-466 474-892 (1238)
82 TIGR03302 OM_YfiO outer membra 99.2 1.2E-09 2.6E-14 101.0 20.5 177 83-310 31-230 (235)
83 COG3071 HemY Uncharacterized e 99.2 4.6E-08 9.9E-13 91.3 30.0 287 92-419 84-388 (400)
84 cd05804 StaR_like StaR_like; a 99.2 4.6E-08 9.9E-13 96.5 31.7 298 81-453 2-336 (355)
85 PLN02789 farnesyltranstransfer 99.2 3.2E-08 6.9E-13 94.3 28.3 203 222-437 49-268 (320)
86 PLN02789 farnesyltranstransfer 99.2 4E-08 8.6E-13 93.7 27.1 169 227-402 89-269 (320)
87 KOG0495 HAT repeat protein [RN 99.1 7.1E-07 1.5E-11 88.3 34.3 322 107-470 531-865 (913)
88 TIGR03302 OM_YfiO outer membra 99.1 6.4E-09 1.4E-13 96.1 19.8 180 239-453 30-232 (235)
89 PRK15359 type III secretion sy 99.1 5.9E-09 1.3E-13 87.7 15.5 120 340-468 13-138 (144)
90 PRK15359 type III secretion sy 99.1 5.4E-09 1.2E-13 87.9 14.9 119 375-514 12-136 (144)
91 PRK04841 transcriptional regul 99.1 4.5E-07 9.7E-12 101.1 33.8 349 105-502 354-761 (903)
92 PF12569 NARP1: NMDA receptor- 99.0 9.3E-07 2E-11 89.4 31.4 293 124-500 4-333 (517)
93 PRK14720 transcript cleavage f 99.0 4.6E-08 1E-12 103.2 21.4 216 238-515 27-268 (906)
94 PF14938 SNAP: Soluble NSF att 99.0 5.5E-08 1.2E-12 92.1 18.5 209 142-425 29-270 (282)
95 KOG0550 Molecular chaperone (D 99.0 8.6E-08 1.9E-12 89.7 19.0 173 264-453 149-350 (486)
96 PRK14720 transcript cleavage f 99.0 1.3E-07 2.9E-12 99.9 22.8 213 120-400 27-269 (906)
97 PRK10370 formate-dependent nit 98.9 2.7E-08 5.8E-13 88.4 14.5 114 334-455 53-175 (198)
98 PRK10370 formate-dependent nit 98.9 3.2E-08 7E-13 87.9 14.2 115 369-503 52-175 (198)
99 PRK04841 transcriptional regul 98.9 1.3E-06 2.8E-11 97.5 30.0 289 128-453 413-760 (903)
100 KOG3617 WD40 and TPR repeat-co 98.9 1.2E-06 2.5E-11 88.7 25.8 185 147-383 788-994 (1416)
101 KOG1156 N-terminal acetyltrans 98.9 1.8E-05 3.9E-10 78.7 33.4 354 87-509 9-442 (700)
102 KOG0550 Molecular chaperone (D 98.9 5.1E-07 1.1E-11 84.7 21.5 258 105-385 62-350 (486)
103 COG3071 HemY Uncharacterized e 98.9 1.2E-05 2.5E-10 75.6 29.6 275 141-500 97-389 (400)
104 KOG2376 Signal recognition par 98.9 4.2E-05 9E-10 75.4 34.1 382 67-515 26-503 (652)
105 KOG4340 Uncharacterized conser 98.9 1.4E-06 3E-11 78.3 21.9 180 105-313 23-208 (459)
106 PF14938 SNAP: Soluble NSF att 98.8 7E-07 1.5E-11 84.6 20.8 210 105-388 28-269 (282)
107 PRK15179 Vi polysaccharide bio 98.8 1.6E-06 3.4E-11 91.0 24.5 128 313-453 84-217 (694)
108 KOG2376 Signal recognition par 98.8 0.00014 2.9E-09 71.9 35.5 354 89-468 83-504 (652)
109 KOG3785 Uncharacterized conser 98.8 2.3E-05 5E-10 72.3 28.5 238 105-381 35-310 (557)
110 PRK15179 Vi polysaccharide bio 98.8 2.4E-07 5.3E-12 97.1 18.0 129 350-502 84-218 (694)
111 KOG1128 Uncharacterized conser 98.8 2.1E-07 4.6E-12 93.1 16.4 211 159-422 397-617 (777)
112 KOG1128 Uncharacterized conser 98.8 4.2E-07 9.1E-12 91.1 18.2 209 213-453 401-616 (777)
113 PF12569 NARP1: NMDA receptor- 98.8 1.2E-05 2.5E-10 81.6 28.6 287 85-421 4-334 (517)
114 TIGR02552 LcrH_SycD type III s 98.7 2.8E-07 6E-12 77.0 12.5 105 342-454 5-115 (135)
115 TIGR02552 LcrH_SycD type III s 98.7 3.8E-07 8.2E-12 76.1 13.2 109 304-425 4-118 (135)
116 COG5010 TadD Flp pilus assembl 98.7 3.3E-06 7.1E-11 75.0 18.8 169 277-465 65-241 (257)
117 PRK15363 pathogenicity island 98.6 5.5E-07 1.2E-11 74.6 12.1 99 158-313 33-133 (157)
118 COG5010 TadD Flp pilus assembl 98.6 5.1E-06 1.1E-10 73.9 18.7 156 314-499 66-229 (257)
119 KOG3617 WD40 and TPR repeat-co 98.6 2.5E-05 5.3E-10 79.5 25.1 268 124-450 858-1171(1416)
120 PRK10866 outer membrane biogen 98.6 9.5E-06 2.1E-10 74.5 20.6 174 84-308 31-237 (243)
121 PRK15363 pathogenicity island 98.6 1E-06 2.2E-11 73.0 12.2 94 352-453 35-132 (157)
122 KOG2047 mRNA splicing factor [ 98.5 0.0006 1.3E-08 68.1 31.7 221 261-514 361-628 (835)
123 KOG3060 Uncharacterized conser 98.5 1E-05 2.2E-10 71.3 17.2 150 141-312 65-220 (289)
124 PF12688 TPR_5: Tetratrico pep 98.5 4.4E-06 9.6E-11 66.9 13.8 94 352-453 1-104 (120)
125 KOG1941 Acetylcholine receptor 98.5 6.8E-05 1.5E-09 69.5 22.7 207 280-520 84-346 (518)
126 KOG3060 Uncharacterized conser 98.5 9.7E-05 2.1E-09 65.4 22.5 156 296-465 65-232 (289)
127 KOG1941 Acetylcholine receptor 98.5 5.6E-05 1.2E-09 70.1 21.5 188 243-452 123-359 (518)
128 PLN03088 SGT1, suppressor of 98.5 4.3E-06 9.3E-11 81.7 15.1 105 356-468 6-116 (356)
129 PLN03088 SGT1, suppressor of 98.5 3.8E-06 8.3E-11 82.1 14.4 104 392-515 6-115 (356)
130 CHL00033 ycf3 photosystem I as 98.5 2.7E-06 5.9E-11 73.9 12.0 118 388-511 35-162 (168)
131 KOG3785 Uncharacterized conser 98.4 0.00019 4.1E-09 66.4 23.8 259 141-441 35-333 (557)
132 KOG2047 mRNA splicing factor [ 98.4 0.0014 3.1E-08 65.5 31.3 225 217-455 354-617 (835)
133 KOG4340 Uncharacterized conser 98.4 3.6E-05 7.8E-10 69.5 17.4 205 221-448 21-265 (459)
134 KOG1915 Cell cycle control pro 98.4 0.0028 6E-08 61.3 31.2 208 278-511 321-547 (677)
135 PF13414 TPR_11: TPR repeat; P 98.4 1.5E-06 3.2E-11 62.9 7.2 62 388-453 3-67 (69)
136 PRK02603 photosystem I assembl 98.4 1.3E-05 2.9E-10 69.8 14.1 92 351-450 34-132 (172)
137 COG4783 Putative Zn-dependent 98.4 2.2E-05 4.8E-10 75.8 16.3 133 111-304 293-429 (484)
138 PF12895 Apc3: Anaphase-promot 98.3 3.1E-06 6.8E-11 63.9 8.5 77 405-498 2-84 (84)
139 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.4E-05 3E-10 64.8 13.0 94 352-453 2-105 (119)
140 PF13414 TPR_11: TPR repeat; P 98.3 3.2E-06 6.9E-11 61.1 8.2 65 351-423 2-69 (69)
141 PF04733 Coatomer_E: Coatomer 98.3 5.6E-06 1.2E-10 78.0 11.4 160 242-423 102-267 (290)
142 PF09976 TPR_21: Tetratricopep 98.3 3.4E-05 7.3E-10 65.1 15.2 75 390-468 50-130 (145)
143 CHL00033 ycf3 photosystem I as 98.3 2E-05 4.3E-10 68.5 14.1 109 335-451 14-140 (168)
144 PRK02603 photosystem I assembl 98.3 2.6E-05 5.6E-10 68.0 14.5 110 314-454 34-150 (172)
145 KOG0553 TPR repeat-containing 98.3 1.5E-05 3.2E-10 72.4 12.8 98 333-438 94-197 (304)
146 KOG0553 TPR repeat-containing 98.3 1.4E-05 2.9E-10 72.6 12.3 108 353-468 82-195 (304)
147 PF04733 Coatomer_E: Coatomer 98.3 2.3E-05 4.9E-10 74.0 14.3 210 220-451 45-263 (290)
148 PF09976 TPR_21: Tetratricopep 98.3 2.1E-05 4.5E-10 66.4 12.6 110 334-451 25-145 (145)
149 PF12688 TPR_5: Tetratrico pep 98.3 2.2E-05 4.8E-10 62.9 11.8 94 389-502 2-105 (120)
150 cd00189 TPR Tetratricopeptide 98.2 1.4E-05 3E-10 61.2 10.7 92 354-453 2-97 (100)
151 PRK10866 outer membrane biogen 98.2 0.0002 4.2E-09 65.9 19.1 178 124-381 32-237 (243)
152 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.4E-05 7.3E-10 62.5 12.6 94 317-423 4-107 (119)
153 COG4783 Putative Zn-dependent 98.2 0.00013 2.7E-09 70.7 18.0 132 156-349 302-437 (484)
154 cd00189 TPR Tetratricopeptide 98.2 3E-05 6.4E-10 59.4 11.7 93 390-502 2-98 (100)
155 PF12895 Apc3: Anaphase-promot 98.2 6.6E-06 1.4E-10 62.1 7.4 77 369-450 2-84 (84)
156 PF13525 YfiO: Outer membrane 98.1 0.00027 5.8E-09 63.4 17.8 152 279-443 5-197 (203)
157 PRK10153 DNA-binding transcrip 98.1 0.00018 3.9E-09 73.5 18.3 125 296-428 355-489 (517)
158 PRK11906 transcriptional regul 98.1 0.0002 4.3E-09 69.7 17.3 150 296-453 271-436 (458)
159 PRK10803 tol-pal system protei 98.1 7.6E-05 1.7E-09 69.1 13.8 94 352-453 142-246 (263)
160 PRK11906 transcriptional regul 98.1 0.00024 5.1E-09 69.2 17.5 163 244-422 257-437 (458)
161 PF13525 YfiO: Outer membrane 98.1 0.00023 5.1E-09 63.7 16.2 167 84-301 4-196 (203)
162 KOG1586 Protein required for f 98.1 0.00056 1.2E-08 59.8 17.2 66 261-348 28-101 (288)
163 PRK10803 tol-pal system protei 98.1 0.00011 2.4E-09 68.1 13.9 96 387-502 141-247 (263)
164 KOG1586 Protein required for f 98.1 0.00061 1.3E-08 59.6 17.3 94 319-424 117-227 (288)
165 PF13432 TPR_16: Tetratricopep 98.0 1.3E-05 2.9E-10 57.0 5.9 60 129-192 2-63 (65)
166 PRK15331 chaperone protein Sic 98.0 0.00012 2.6E-09 61.2 12.2 110 159-325 36-147 (165)
167 PF13424 TPR_12: Tetratricopep 98.0 3.4E-05 7.3E-10 57.3 8.3 61 424-500 5-74 (78)
168 PF13432 TPR_16: Tetratricopep 98.0 2.7E-05 5.8E-10 55.4 6.8 56 394-453 3-60 (65)
169 COG4235 Cytochrome c biogenesi 98.0 0.00017 3.8E-09 66.0 13.4 115 335-454 137-257 (287)
170 KOG0543 FKBP-type peptidyl-pro 98.0 0.00026 5.6E-09 67.3 14.9 140 318-500 211-354 (397)
171 PF13424 TPR_12: Tetratricopep 97.9 6.5E-05 1.4E-09 55.7 8.3 61 389-453 6-75 (78)
172 KOG1915 Cell cycle control pro 97.9 0.025 5.4E-07 55.0 33.7 343 105-503 86-502 (677)
173 COG4235 Cytochrome c biogenesi 97.9 0.0001 2.2E-09 67.4 10.5 106 80-193 151-260 (287)
174 PRK10153 DNA-binding transcrip 97.9 0.0005 1.1E-08 70.3 16.5 136 240-386 335-483 (517)
175 KOG4555 TPR repeat-containing 97.9 0.0004 8.8E-09 54.8 11.7 98 357-462 48-153 (175)
176 KOG3081 Vesicle coat complex C 97.9 0.0061 1.3E-07 54.7 20.3 229 220-470 18-255 (299)
177 PRK15331 chaperone protein Sic 97.8 0.00051 1.1E-08 57.4 12.8 93 280-385 38-134 (165)
178 KOG4555 TPR repeat-containing 97.8 0.00053 1.1E-08 54.2 11.2 98 394-511 49-154 (175)
179 COG4785 NlpI Lipoprotein NlpI, 97.8 0.0041 8.8E-08 54.0 17.1 122 129-276 70-195 (297)
180 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00095 2.1E-08 65.3 14.7 108 334-450 183-294 (395)
181 KOG3081 Vesicle coat complex C 97.7 0.032 7E-07 50.2 26.5 161 243-423 109-273 (299)
182 KOG2471 TPR repeat-containing 97.7 0.0065 1.4E-07 59.0 19.3 122 157-291 237-381 (696)
183 COG1729 Uncharacterized protei 97.7 0.00074 1.6E-08 61.2 11.9 91 355-453 144-244 (262)
184 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.0002 4.4E-09 69.6 8.8 64 350-421 73-141 (453)
185 COG1729 Uncharacterized protei 97.7 0.001 2.2E-08 60.3 12.6 99 314-425 140-248 (262)
186 KOG0543 FKBP-type peptidyl-pro 97.6 0.00086 1.9E-08 63.8 12.4 62 354-423 259-322 (397)
187 COG0457 NrfG FOG: TPR repeat [ 97.6 0.045 9.8E-07 49.3 26.2 209 262-503 38-267 (291)
188 COG4785 NlpI Lipoprotein NlpI, 97.6 0.0081 1.8E-07 52.2 16.8 186 216-422 71-267 (297)
189 COG4700 Uncharacterized protei 97.6 0.029 6.3E-07 47.7 19.4 141 262-419 71-220 (251)
190 KOG2471 TPR repeat-containing 97.6 0.017 3.6E-07 56.3 20.3 145 105-253 219-380 (696)
191 smart00671 SEL1 Sel1-like repe 97.6 0.00013 2.8E-09 44.7 4.3 36 124-159 1-36 (36)
192 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0048 1E-07 60.4 17.0 106 262-381 184-293 (395)
193 COG0457 NrfG FOG: TPR repeat [ 97.5 0.065 1.4E-06 48.2 27.1 218 225-466 38-276 (291)
194 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0015 3.2E-08 63.7 11.2 69 311-388 71-144 (453)
195 PF08238 Sel1: Sel1 repeat; I 97.4 0.00016 3.4E-09 45.3 3.1 36 124-159 1-39 (39)
196 PF13512 TPR_18: Tetratricopep 97.3 0.0092 2E-07 48.9 12.9 110 387-501 9-128 (142)
197 PF14559 TPR_19: Tetratricopep 97.3 0.0011 2.3E-08 47.5 6.9 50 405-454 4-55 (68)
198 PF13371 TPR_9: Tetratricopept 97.3 0.0017 3.8E-08 47.2 8.0 56 395-454 2-59 (73)
199 PF14559 TPR_19: Tetratricopep 97.2 0.0013 2.8E-08 47.1 6.6 60 223-287 4-67 (68)
200 COG4700 Uncharacterized protei 97.2 0.058 1.3E-06 45.9 16.9 141 224-382 70-219 (251)
201 KOG3616 Selective LIM binding 97.2 0.04 8.7E-07 56.3 18.7 209 127-383 664-909 (1636)
202 smart00671 SEL1 Sel1-like repe 97.2 0.00093 2E-08 40.8 4.9 32 390-421 3-34 (36)
203 PF13371 TPR_9: Tetratricopept 97.1 0.0031 6.7E-08 45.8 7.8 62 431-508 2-67 (73)
204 PF13512 TPR_18: Tetratricopep 97.0 0.02 4.3E-07 46.9 12.3 95 351-453 9-128 (142)
205 KOG1585 Protein required for f 97.0 0.2 4.3E-06 44.7 18.8 43 406-448 124-174 (308)
206 PF08238 Sel1: Sel1 repeat; I 97.0 0.0012 2.6E-08 41.1 4.1 34 389-422 2-38 (39)
207 COG4105 ComL DNA uptake lipopr 97.0 0.14 2.9E-06 46.4 18.0 182 83-377 32-225 (254)
208 KOG1585 Protein required for f 97.0 0.11 2.3E-06 46.3 16.8 181 244-448 33-251 (308)
209 KOG1070 rRNA processing protei 97.0 0.15 3.2E-06 56.3 21.1 192 238-454 1454-1664(1710)
210 KOG1070 rRNA processing protei 97.0 0.41 8.8E-06 53.1 24.3 197 296-522 1471-1688(1710)
211 COG4105 ComL DNA uptake lipopr 96.9 0.34 7.3E-06 43.9 21.6 182 240-454 32-233 (254)
212 PF10300 DUF3808: Protein of u 96.8 0.061 1.3E-06 54.8 16.8 151 294-452 199-375 (468)
213 PF13428 TPR_14: Tetratricopep 96.8 0.0038 8.3E-08 40.1 5.1 40 425-464 2-43 (44)
214 PF13431 TPR_17: Tetratricopep 96.6 0.0021 4.6E-08 38.6 2.8 31 414-444 1-33 (34)
215 PF10300 DUF3808: Protein of u 96.6 0.16 3.5E-06 51.7 17.6 155 333-500 201-375 (468)
216 PF13428 TPR_14: Tetratricopep 96.5 0.0081 1.8E-07 38.6 5.1 39 353-395 2-42 (44)
217 KOG4234 TPR repeat-containing 96.5 0.092 2E-06 45.3 12.4 93 356-456 99-200 (271)
218 PF00515 TPR_1: Tetratricopept 96.4 0.0052 1.1E-07 36.8 3.6 31 161-191 2-32 (34)
219 KOG3616 Selective LIM binding 96.4 0.31 6.7E-06 50.2 17.6 258 105-386 745-1025(1636)
220 PF04184 ST7: ST7 protein; In 96.3 0.43 9.4E-06 47.3 17.8 139 316-464 260-427 (539)
221 KOG2300 Uncharacterized conser 96.3 1.2 2.7E-05 43.8 35.2 376 99-514 16-487 (629)
222 PF07719 TPR_2: Tetratricopept 96.3 0.01 2.2E-07 35.4 4.6 29 425-453 2-30 (34)
223 PF06552 TOM20_plant: Plant sp 96.3 0.014 3.1E-07 49.5 6.6 90 408-502 7-110 (186)
224 PF07719 TPR_2: Tetratricopept 96.3 0.0066 1.4E-07 36.3 3.6 31 161-191 2-32 (34)
225 PF00515 TPR_1: Tetratricopept 96.2 0.012 2.6E-07 35.2 4.6 28 426-453 3-30 (34)
226 PF06552 TOM20_plant: Plant sp 96.2 0.051 1.1E-06 46.2 9.5 99 336-434 7-122 (186)
227 PF13176 TPR_7: Tetratricopept 96.2 0.012 2.6E-07 35.8 4.4 29 162-190 1-29 (36)
228 PF13176 TPR_7: Tetratricopept 96.0 0.014 3.1E-07 35.5 4.1 28 426-453 1-28 (36)
229 PF13281 DUF4071: Domain of un 96.0 1.7 3.7E-05 42.3 20.1 104 241-350 140-256 (374)
230 PF13281 DUF4071: Domain of un 95.9 1.5 3.4E-05 42.6 19.4 172 279-460 141-340 (374)
231 PF04184 ST7: ST7 protein; In 95.8 0.81 1.8E-05 45.4 16.9 154 105-278 181-377 (539)
232 PF13431 TPR_17: Tetratricopep 95.7 0.011 2.4E-07 35.4 2.7 30 270-303 2-33 (34)
233 KOG4648 Uncharacterized conser 95.6 0.037 7.9E-07 51.6 6.7 93 319-424 101-197 (536)
234 COG2976 Uncharacterized protei 95.6 0.24 5.1E-06 42.8 11.0 93 281-386 91-189 (207)
235 COG2976 Uncharacterized protei 95.5 0.97 2.1E-05 39.1 14.5 97 244-354 91-193 (207)
236 PF13181 TPR_8: Tetratricopept 95.5 0.033 7.1E-07 33.2 4.2 31 161-191 2-32 (34)
237 KOG2796 Uncharacterized conser 95.4 0.92 2E-05 41.1 14.4 139 316-467 178-334 (366)
238 PF13174 TPR_6: Tetratricopept 95.4 0.02 4.4E-07 33.8 3.0 31 161-191 1-31 (33)
239 KOG2796 Uncharacterized conser 95.3 0.53 1.1E-05 42.6 12.6 143 264-427 166-321 (366)
240 KOG4234 TPR repeat-containing 95.3 0.24 5.2E-06 42.8 10.1 88 333-428 108-204 (271)
241 PF09986 DUF2225: Uncharacteri 95.2 0.18 3.8E-06 45.3 9.7 83 404-502 89-195 (214)
242 KOG4648 Uncharacterized conser 95.0 0.12 2.7E-06 48.2 8.2 92 355-454 100-195 (536)
243 PF13181 TPR_8: Tetratricopept 95.0 0.062 1.3E-06 32.0 4.3 29 425-453 2-30 (34)
244 PF09986 DUF2225: Uncharacteri 94.8 0.37 8.1E-06 43.2 10.6 28 426-453 167-194 (214)
245 PF03704 BTAD: Bacterial trans 94.6 1.2 2.6E-05 37.2 12.9 62 388-453 62-125 (146)
246 KOG2300 Uncharacterized conser 94.1 7 0.00015 38.9 18.8 61 173-235 288-348 (629)
247 PF08631 SPO22: Meiosis protei 93.9 5.8 0.00013 37.4 26.5 65 243-312 85-150 (278)
248 PF13174 TPR_6: Tetratricopept 93.9 0.098 2.1E-06 30.7 3.5 29 425-453 1-29 (33)
249 COG3898 Uncharacterized membra 93.6 7.4 0.00016 37.6 27.7 178 105-312 97-292 (531)
250 PF05843 Suf: Suppressor of fo 93.6 2.3 5E-05 40.1 13.9 111 335-453 16-136 (280)
251 PF03704 BTAD: Bacterial trans 93.1 2.2 4.7E-05 35.6 11.7 62 241-311 61-124 (146)
252 KOG4642 Chaperone-dependent E3 93.0 0.39 8.4E-06 42.8 7.0 78 335-420 25-106 (284)
253 PF13374 TPR_10: Tetratricopep 92.9 0.25 5.4E-06 30.8 4.5 29 425-453 3-31 (42)
254 PF05843 Suf: Suppressor of fo 92.8 4.7 0.0001 38.1 14.7 129 281-424 3-139 (280)
255 KOG0985 Vesicle coat protein c 92.4 20 0.00043 39.3 25.3 60 240-311 1102-1161(1666)
256 PF02259 FAT: FAT domain; Int 92.3 12 0.00025 36.6 24.7 149 351-507 145-344 (352)
257 PF13374 TPR_10: Tetratricopep 92.0 0.36 7.7E-06 30.0 4.3 31 161-191 3-33 (42)
258 PF11207 DUF2989: Protein of u 91.9 1.7 3.8E-05 38.0 9.6 73 369-446 119-200 (203)
259 KOG4642 Chaperone-dependent E3 91.9 0.81 1.7E-05 40.9 7.5 83 258-349 21-107 (284)
260 KOG2041 WD40 repeat protein [G 91.5 20 0.00043 37.5 23.0 82 279-381 796-877 (1189)
261 KOG0545 Aryl-hydrocarbon recep 91.3 2.6 5.6E-05 37.9 10.0 86 141-279 191-296 (329)
262 KOG0985 Vesicle coat protein c 90.9 29 0.00062 38.2 29.6 193 216-451 1054-1247(1666)
263 COG3118 Thioredoxin domain-con 90.7 12 0.00027 34.8 14.1 45 141-185 147-193 (304)
264 PF11207 DUF2989: Protein of u 90.5 2.5 5.3E-05 37.1 9.1 71 298-378 121-200 (203)
265 PF12968 DUF3856: Domain of Un 90.4 4.5 9.8E-05 32.0 9.4 81 405-501 22-129 (144)
266 smart00028 TPR Tetratricopepti 90.3 0.47 1E-05 26.8 3.4 29 425-453 2-30 (34)
267 KOG0551 Hsp90 co-chaperone CNS 89.7 3.6 7.8E-05 38.8 9.9 90 356-453 85-182 (390)
268 KOG3824 Huntingtin interacting 89.5 0.81 1.7E-05 42.3 5.6 78 87-168 111-192 (472)
269 KOG4507 Uncharacterized conser 88.7 1.4 3E-05 44.6 6.9 81 369-453 620-705 (886)
270 PF07721 TPR_4: Tetratricopept 88.6 0.73 1.6E-05 25.4 3.1 24 425-448 2-25 (26)
271 COG4649 Uncharacterized protei 88.2 15 0.00033 31.3 14.6 127 261-395 72-207 (221)
272 smart00028 TPR Tetratricopepti 88.0 0.75 1.6E-05 25.9 3.2 27 391-421 4-30 (34)
273 PF04053 Coatomer_WDAD: Coatom 87.9 14 0.00031 37.3 13.8 84 157-272 344-427 (443)
274 KOG4507 Uncharacterized conser 87.7 1.8 3.9E-05 43.8 7.0 83 333-423 620-707 (886)
275 PF04053 Coatomer_WDAD: Coatom 87.7 24 0.00051 35.8 15.1 27 278-308 346-372 (443)
276 COG3898 Uncharacterized membra 87.6 29 0.00063 33.8 29.2 286 141-468 97-407 (531)
277 PF10602 RPN7: 26S proteasome 87.5 7.3 0.00016 33.8 10.2 91 279-382 36-139 (177)
278 COG4649 Uncharacterized protei 87.5 17 0.00037 31.1 13.7 124 335-466 73-210 (221)
279 KOG0545 Aryl-hydrocarbon recep 87.1 9.6 0.00021 34.4 10.4 63 353-423 231-295 (329)
280 PF08631 SPO22: Meiosis protei 86.9 28 0.0006 32.8 23.0 15 485-499 259-273 (278)
281 TIGR03504 FimV_Cterm FimV C-te 86.9 3.6 7.8E-05 26.2 5.8 30 428-457 3-32 (44)
282 PF10602 RPN7: 26S proteasome 86.0 9.8 0.00021 33.0 10.1 93 352-452 36-141 (177)
283 PF14853 Fis1_TPR_C: Fis1 C-te 85.9 5.5 0.00012 26.6 6.5 28 426-453 3-30 (53)
284 KOG2053 Mitochondrial inherita 85.4 60 0.0013 35.2 27.0 83 105-191 22-108 (932)
285 KOG0551 Hsp90 co-chaperone CNS 85.1 4.4 9.5E-05 38.2 7.7 92 318-422 84-183 (390)
286 PF07721 TPR_4: Tetratricopept 84.5 1.5 3.2E-05 24.2 2.9 24 280-307 2-25 (26)
287 PF02259 FAT: FAT domain; Int 84.3 42 0.00091 32.6 26.0 144 277-435 144-303 (352)
288 COG3118 Thioredoxin domain-con 84.0 37 0.00081 31.8 15.7 32 386-421 234-265 (304)
289 KOG2041 WD40 repeat protein [G 83.6 63 0.0014 34.1 16.8 123 239-382 689-822 (1189)
290 KOG0376 Serine-threonine phosp 83.3 3.2 6.8E-05 41.2 6.3 81 369-453 17-101 (476)
291 KOG1308 Hsp70-interacting prot 81.6 1.4 3.1E-05 41.5 3.2 80 335-422 129-212 (377)
292 KOG1308 Hsp70-interacting prot 81.5 1.3 2.8E-05 41.9 2.8 84 369-456 127-214 (377)
293 KOG0376 Serine-threonine phosp 81.3 3.5 7.6E-05 40.9 5.8 92 333-432 17-112 (476)
294 PF12968 DUF3856: Domain of Un 80.7 27 0.00058 27.8 10.0 28 426-453 102-129 (144)
295 PF14853 Fis1_TPR_C: Fis1 C-te 80.6 2.8 6E-05 28.0 3.5 33 161-193 2-34 (53)
296 PRK13184 pknD serine/threonine 80.1 1.1E+02 0.0023 34.4 19.7 85 69-157 491-581 (932)
297 COG2909 MalT ATP-dependent tra 79.4 1E+02 0.0022 33.6 20.7 220 105-350 428-689 (894)
298 PF10373 EST1_DNA_bind: Est1 D 79.2 8.1 0.00018 36.2 7.7 58 411-468 1-62 (278)
299 PF14561 TPR_20: Tetratricopep 78.2 20 0.00043 27.0 8.0 64 118-185 16-83 (90)
300 KOG2053 Mitochondrial inherita 77.5 1.1E+02 0.0025 33.2 23.0 94 262-364 24-122 (932)
301 PF07720 TPR_3: Tetratricopept 77.4 8.2 0.00018 23.3 4.5 28 425-452 2-31 (36)
302 PF04781 DUF627: Protein of un 77.3 27 0.00059 27.4 8.5 22 167-188 3-24 (111)
303 cd02680 MIT_calpain7_2 MIT: do 77.2 5.8 0.00013 28.7 4.5 16 485-500 19-34 (75)
304 KOG3364 Membrane protein invol 77.1 15 0.00032 30.0 7.1 22 430-451 77-98 (149)
305 KOG3824 Huntingtin interacting 76.1 9.1 0.0002 35.7 6.5 56 262-321 131-190 (472)
306 KOG2610 Uncharacterized conser 75.9 76 0.0017 30.4 15.8 152 218-383 111-274 (491)
307 KOG3364 Membrane protein invol 75.4 30 0.00065 28.3 8.4 67 241-313 31-101 (149)
308 PF12862 Apc5: Anaphase-promot 75.4 33 0.00072 26.0 8.8 49 405-453 11-70 (94)
309 PF12862 Apc5: Anaphase-promot 74.8 25 0.00055 26.7 7.9 48 261-312 12-70 (94)
310 PF10516 SHNi-TPR: SHNi-TPR; 74.3 7.4 0.00016 23.9 3.8 29 425-453 2-30 (38)
311 PF04910 Tcf25: Transcriptiona 73.8 95 0.0021 30.5 17.5 59 225-310 9-67 (360)
312 PF07720 TPR_3: Tetratricopept 73.5 7.9 0.00017 23.4 3.8 23 161-183 2-24 (36)
313 TIGR03504 FimV_Cterm FimV C-te 73.1 20 0.00043 22.8 5.7 29 283-315 3-31 (44)
314 KOG1464 COP9 signalosome, subu 72.9 79 0.0017 29.2 13.5 215 141-364 40-284 (440)
315 PF04910 Tcf25: Transcriptiona 72.7 1E+02 0.0022 30.3 18.2 65 105-191 7-71 (360)
316 KOG4814 Uncharacterized conser 72.6 32 0.0007 35.7 9.8 92 353-452 355-456 (872)
317 cd02680 MIT_calpain7_2 MIT: do 71.9 7.4 0.00016 28.1 3.9 34 262-312 2-35 (75)
318 PF09205 DUF1955: Domain of un 71.6 54 0.0012 26.8 9.0 40 423-462 119-158 (161)
319 PF10516 SHNi-TPR: SHNi-TPR; 71.5 8.8 0.00019 23.5 3.7 29 353-385 2-30 (38)
320 PF10373 EST1_DNA_bind: Est1 D 70.5 16 0.00034 34.3 7.2 58 266-327 1-62 (278)
321 cd02681 MIT_calpain7_1 MIT: do 70.0 7.1 0.00015 28.3 3.6 16 485-500 19-34 (76)
322 KOG0687 26S proteasome regulat 69.8 25 0.00054 33.3 7.8 97 241-349 103-210 (393)
323 KOG3783 Uncharacterized conser 69.4 1.4E+02 0.003 30.6 22.4 69 391-463 452-531 (546)
324 KOG1538 Uncharacterized conser 68.8 1.6E+02 0.0034 31.0 17.2 48 405-453 786-833 (1081)
325 cd02681 MIT_calpain7_1 MIT: do 68.1 14 0.0003 26.8 4.7 20 434-453 16-35 (76)
326 PF04212 MIT: MIT (microtubule 67.7 17 0.00036 25.7 5.2 21 433-453 14-34 (69)
327 PF04212 MIT: MIT (microtubule 67.3 8.9 0.00019 27.2 3.6 16 485-500 18-33 (69)
328 PF04781 DUF627: Protein of un 67.2 36 0.00077 26.8 7.0 38 409-451 61-98 (111)
329 PF10345 Cohesin_load: Cohesin 65.3 2E+02 0.0042 30.8 32.2 73 392-468 365-461 (608)
330 PF09205 DUF1955: Domain of un 65.0 76 0.0017 26.0 9.3 41 277-321 118-158 (161)
331 KOG0890 Protein kinase of the 63.8 3.6E+02 0.0078 33.3 25.4 142 351-504 1669-1836(2382)
332 cd02682 MIT_AAA_Arch MIT: doma 63.4 19 0.00042 26.0 4.6 23 431-453 13-35 (75)
333 KOG1839 Uncharacterized protei 63.1 62 0.0014 36.7 10.5 81 105-189 945-1044(1236)
334 PRK10941 hypothetical protein; 62.2 50 0.0011 30.8 8.5 60 390-453 183-244 (269)
335 PF09613 HrpB1_HrpK: Bacterial 61.7 1E+02 0.0022 26.2 10.6 66 406-471 24-93 (160)
336 cd02682 MIT_AAA_Arch MIT: doma 61.6 13 0.00029 26.8 3.5 16 485-500 19-34 (75)
337 KOG3783 Uncharacterized conser 60.8 2.1E+02 0.0044 29.5 19.4 259 219-502 199-521 (546)
338 cd02679 MIT_spastin MIT: domai 60.7 14 0.0003 27.1 3.5 21 433-453 17-37 (79)
339 PF10579 Rapsyn_N: Rapsyn N-te 60.7 64 0.0014 23.6 7.8 37 431-467 13-51 (80)
340 PF04190 DUF410: Protein of un 60.3 1.5E+02 0.0032 27.6 18.2 41 337-382 74-116 (260)
341 cd02683 MIT_1 MIT: domain cont 60.1 17 0.00037 26.5 4.0 11 442-452 5-15 (77)
342 KOG2610 Uncharacterized conser 59.8 1.7E+02 0.0036 28.2 16.4 143 296-451 116-274 (491)
343 KOG0890 Protein kinase of the 59.7 80 0.0017 38.4 10.9 68 122-193 1668-1735(2382)
344 cd02683 MIT_1 MIT: domain cont 59.4 26 0.00056 25.5 4.8 33 408-453 3-35 (77)
345 COG4976 Predicted methyltransf 58.2 20 0.00043 32.2 4.7 49 333-385 8-58 (287)
346 cd02677 MIT_SNX15 MIT: domain 57.6 17 0.00037 26.3 3.6 32 409-453 4-35 (75)
347 KOG1914 mRNA cleavage and poly 57.0 2.4E+02 0.0052 29.1 19.9 147 143-312 308-464 (656)
348 KOG1839 Uncharacterized protei 57.0 1.2E+02 0.0025 34.7 11.2 98 238-349 969-1086(1236)
349 cd02684 MIT_2 MIT: domain cont 56.2 21 0.00046 25.8 3.9 14 440-453 3-16 (75)
350 PF08139 LPAM_1: Prokaryotic m 56.1 7.1 0.00015 21.3 1.1 23 1-23 1-24 (25)
351 PF12854 PPR_1: PPR repeat 55.8 30 0.00065 20.4 3.9 26 424-449 7-32 (34)
352 COG5187 RPN7 26S proteasome re 55.5 1.8E+02 0.004 27.3 14.0 93 241-349 114-221 (412)
353 PRK13184 pknD serine/threonine 55.2 3.5E+02 0.0076 30.5 18.9 102 162-312 477-581 (932)
354 PF10579 Rapsyn_N: Rapsyn N-te 55.1 81 0.0018 23.1 6.8 44 405-448 19-67 (80)
355 PF10345 Cohesin_load: Cohesin 52.8 3.2E+02 0.0068 29.2 32.0 131 85-236 59-205 (608)
356 PF10952 DUF2753: Protein of u 52.6 79 0.0017 25.4 6.7 57 246-311 5-78 (140)
357 KOG2062 26S proteasome regulat 52.1 3.4E+02 0.0073 29.3 22.0 206 281-518 469-693 (929)
358 smart00745 MIT Microtubule Int 51.2 27 0.00059 25.2 4.0 33 408-453 5-37 (77)
359 COG3629 DnrI DNA-binding trans 50.9 1.7E+02 0.0038 27.4 9.9 80 370-453 135-216 (280)
360 cd02656 MIT MIT: domain contai 50.8 27 0.00059 25.1 3.8 19 435-453 17-35 (75)
361 PF07079 DUF1347: Protein of u 50.8 2.8E+02 0.0061 28.0 14.0 48 405-452 475-523 (549)
362 COG5187 RPN7 26S proteasome re 50.7 1.4E+02 0.0031 28.0 9.0 28 352-383 115-142 (412)
363 COG4976 Predicted methyltransf 49.8 34 0.00074 30.8 4.8 53 369-425 8-62 (287)
364 cd02684 MIT_2 MIT: domain cont 49.7 47 0.001 24.0 4.9 33 408-453 3-35 (75)
365 cd02678 MIT_VPS4 MIT: domain c 49.4 28 0.00061 25.1 3.7 13 441-453 4-16 (75)
366 KOG0687 26S proteasome regulat 49.0 2.5E+02 0.0054 26.9 11.8 94 352-452 104-209 (393)
367 KOG2114 Vacuolar assembly/sort 48.7 2.4E+02 0.0052 30.8 11.4 47 333-386 381-427 (933)
368 cd02678 MIT_VPS4 MIT: domain c 48.5 50 0.0011 23.8 4.9 20 434-453 16-35 (75)
369 smart00745 MIT Microtubule Int 47.4 31 0.00067 24.9 3.7 14 440-453 5-18 (77)
370 cd02677 MIT_SNX15 MIT: domain 47.0 41 0.00089 24.3 4.2 14 441-454 4-17 (75)
371 PF12753 Nro1: Nuclear pore co 46.2 61 0.0013 31.8 6.3 30 335-364 333-362 (404)
372 PF10255 Paf67: RNA polymerase 46.0 49 0.0011 32.9 5.8 58 426-499 124-191 (404)
373 PF12753 Nro1: Nuclear pore co 45.2 60 0.0013 31.8 6.1 49 406-454 332-392 (404)
374 PF12739 TRAPPC-Trs85: ER-Golg 44.2 3.5E+02 0.0075 27.2 16.5 153 281-453 210-399 (414)
375 KOG0739 AAA+-type ATPase [Post 43.9 1.2E+02 0.0026 28.7 7.5 32 226-275 7-38 (439)
376 PF01535 PPR: PPR repeat; Int 43.5 46 0.00099 18.3 3.4 26 428-453 4-29 (31)
377 PF14561 TPR_20: Tetratricopep 43.3 1.4E+02 0.0031 22.4 8.5 35 237-276 17-51 (90)
378 PF13041 PPR_2: PPR repeat fam 42.5 42 0.00091 21.6 3.5 31 159-189 2-32 (50)
379 PF04190 DUF410: Protein of un 42.1 2.9E+02 0.0063 25.7 15.8 65 241-309 48-116 (260)
380 PF13041 PPR_2: PPR repeat fam 41.5 73 0.0016 20.4 4.5 30 425-454 4-33 (50)
381 TIGR02561 HrpB1_HrpK type III 41.4 1.9E+02 0.0041 24.2 7.6 67 405-471 23-93 (153)
382 KOG0276 Vesicle coat complex C 41.3 4.3E+02 0.0093 27.8 11.4 53 216-276 643-695 (794)
383 KOG2114 Vacuolar assembly/sort 40.7 5.3E+02 0.011 28.3 14.8 86 280-381 369-456 (933)
384 KOG2062 26S proteasome regulat 39.1 5.3E+02 0.012 27.9 20.0 304 52-402 355-693 (929)
385 PF10952 DUF2753: Protein of u 38.9 1.7E+02 0.0037 23.6 6.6 76 163-276 4-79 (140)
386 COG1747 Uncharacterized N-term 38.8 4.6E+02 0.0099 27.0 16.0 149 298-457 81-238 (711)
387 TIGR00756 PPR pentatricopeptid 38.5 74 0.0016 17.8 4.0 27 428-454 4-30 (35)
388 PF11846 DUF3366: Domain of un 37.3 1.1E+02 0.0024 26.8 6.4 49 405-453 124-173 (193)
389 cd02679 MIT_spastin MIT: domai 34.5 64 0.0014 23.6 3.5 16 141-156 21-36 (79)
390 KOG4279 Serine/threonine prote 34.0 2E+02 0.0044 30.9 8.1 19 260-278 379-397 (1226)
391 PF11817 Foie-gras_1: Foie gra 33.7 2E+02 0.0043 26.4 7.7 75 108-186 161-244 (247)
392 KOG0292 Vesicle coat complex C 33.4 4.3E+02 0.0092 29.2 10.4 95 240-360 644-738 (1202)
393 KOG4279 Serine/threonine prote 33.4 1.6E+02 0.0035 31.5 7.3 28 159-186 200-227 (1226)
394 PF10255 Paf67: RNA polymerase 33.2 66 0.0014 32.0 4.5 68 121-188 111-192 (404)
395 PF08311 Mad3_BUB1_I: Mad3/BUB 33.2 2.6E+02 0.0056 22.6 8.5 42 410-451 81-126 (126)
396 PF07079 DUF1347: Protein of u 29.5 6.2E+02 0.013 25.7 18.4 63 369-435 475-539 (549)
397 KOG1497 COP9 signalosome, subu 29.4 5.2E+02 0.011 24.8 10.4 21 281-305 105-125 (399)
398 PF05053 Menin: Menin; InterP 29.3 1.9E+02 0.0042 29.9 7.0 64 314-384 276-346 (618)
399 KOG0739 AAA+-type ATPase [Post 27.0 3.5E+02 0.0077 25.7 7.7 12 513-524 258-269 (439)
400 PF09613 HrpB1_HrpK: Bacterial 26.7 4E+02 0.0087 22.7 14.2 81 237-327 39-122 (160)
401 COG2909 MalT ATP-dependent tra 26.4 9.2E+02 0.02 26.8 26.4 215 217-452 422-687 (894)
402 COG4259 Uncharacterized protei 26.2 1.9E+02 0.0041 22.3 4.8 30 423-452 71-100 (121)
403 KOG1310 WD40 repeat protein [G 26.2 5.6E+02 0.012 26.5 9.4 51 405-455 424-476 (758)
404 KOG0276 Vesicle coat complex C 26.1 7.6E+02 0.017 26.1 10.4 58 240-312 638-695 (794)
405 KOG1497 COP9 signalosome, subu 26.1 6E+02 0.013 24.5 9.6 57 354-418 105-170 (399)
406 PRK10941 hypothetical protein; 25.3 4.2E+02 0.009 24.8 8.2 61 355-423 184-246 (269)
407 KOG0292 Vesicle coat complex C 25.3 5.1E+02 0.011 28.7 9.3 127 83-250 594-738 (1202)
408 PF05053 Menin: Menin; InterP 25.2 2.9E+02 0.0063 28.7 7.4 65 240-311 275-346 (618)
409 PF11817 Foie-gras_1: Foie gra 25.2 3.5E+02 0.0077 24.8 7.8 22 89-117 14-35 (247)
410 TIGR00823 EIIA-LAC phosphotran 23.6 2.1E+02 0.0045 22.1 4.9 40 414-453 7-46 (99)
411 cd00215 PTS_IIA_lac PTS_IIA, P 22.4 2.3E+02 0.0049 21.8 4.8 39 415-453 6-44 (97)
412 KOG2581 26S proteasome regulat 22.1 8E+02 0.017 24.5 14.3 95 351-453 168-276 (493)
413 COG3014 Uncharacterized protei 21.2 3.9E+02 0.0085 25.9 7.0 28 162-189 127-154 (449)
414 PRK09591 celC cellobiose phosp 20.4 2.5E+02 0.0053 21.9 4.7 40 414-453 10-49 (104)
415 COG4259 Uncharacterized protei 20.2 3.1E+02 0.0067 21.2 4.9 26 279-308 72-97 (121)
416 COG1747 Uncharacterized N-term 20.0 9.9E+02 0.021 24.8 15.9 76 108-189 82-160 (711)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3e-34 Score=273.89 Aligned_cols=365 Identities=19% Similarity=0.120 Sum_probs=321.2
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--CH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG--NI 160 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~ 160 (525)
++++-.+|.++-. .++++.|+.+|+.+. ++.+.+++.++|..+.. .++.+.|...|..|++.+ ..
T Consensus 116 ae~ysn~aN~~ke-------rg~~~~al~~y~~aiel~p~fida~inla~al~~----~~~~~~a~~~~~~alqlnP~l~ 184 (966)
T KOG4626|consen 116 AEAYSNLANILKE-------RGQLQDALALYRAAIELKPKFIDAYINLAAALVT----QGDLELAVQCFFEALQLNPDLY 184 (966)
T ss_pred HHHHHHHHHHHHH-------hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHh----cCCCcccHHHHHHHHhcCcchh
Confidence 4455555655443 788899999998875 66788999999998888 788889999999988764 57
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH--H
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA--Q 238 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~ 238 (525)
.+...+|.++...|+..+|...|.++++..+.. ...+.++|-+...+|+...|+..|++++ +
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f----------------AiawsnLg~~f~~~Gei~~aiq~y~eAvkld 248 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCF----------------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD 248 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCce----------------eeeehhcchHHhhcchHHHHHHHHHHhhcCC
Confidence 788889999999999999999999988764432 2346789999999999999999999985 5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L 314 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~ 314 (525)
|+.++|+++||.+|... +.+++|+..|.+|+.. +++.++-+||.+|.. +|..+.|+..|+++++.. .
T Consensus 249 P~f~dAYiNLGnV~ke~-----~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye----qG~ldlAI~~Ykral~~~P~F 319 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEA-----RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE----QGLLDLAIDTYKRALELQPNF 319 (966)
T ss_pred CcchHHHhhHHHHHHHH-----hcchHHHHHHHHHHhcCCcchhhccceEEEEec----cccHHHHHHHHHHHHhcCCCc
Confidence 68999999999999877 4999999999999976 788999999999999 999999999999999874 8
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 390 (525)
++++.+||..+.. +|+..+|..+|.+++.. ..++++++||.+|.+ ++.+++|...|+++++. +.+.+
T Consensus 320 ~~Ay~NlanALkd-----~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa 390 (966)
T KOG4626|consen 320 PDAYNNLANALKD-----KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAA 390 (966)
T ss_pred hHHHhHHHHHHHh-----ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhh
Confidence 9999999999976 68999999999999987 689999999999999 99999999999999987 67889
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHH
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWIL 466 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~ 466 (525)
+.+||.+|.. ++++++|+..|+.|+.+.| ++++.++|.+|-.+|+...|+.+|.+|+..+ ..+|+.|||.+|
T Consensus 391 ~nNLa~i~kq----qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 391 HNNLASIYKQ----QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhHHHHHHh----cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 9999999998 9999999999999999987 6789999999999999999999999999875 678999999999
Q ss_pred hhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
.. .++..+||.-|+.|++.. .++|.-+|..+.
T Consensus 467 kD----------------sGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 467 KD----------------SGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred hc----------------cCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 76 668899999999999864 688888877654
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-34 Score=272.79 Aligned_cols=386 Identities=16% Similarity=0.121 Sum_probs=337.3
Q ss_pred cCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCcc
Q 009801 66 NLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 66 ~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~ 141 (525)
.+||.+|.++-... -++.+.+.+..++-++.. ..++++....-..+. .+.-++++.++|.++.. .
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q-------~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke----r 129 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQ-------GSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE----R 129 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhc-------ccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH----h
Confidence 35666666555444 455666666677776665 445666655555544 34558899999999999 9
Q ss_pred CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 142 RNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
++.+.|+.+|+.+++. +.++|+.++|.++..+|+.+.|...|.+++.++|..... ...+|.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca----------------~s~lgnL 193 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA----------------RSDLGNL 193 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh----------------hcchhHH
Confidence 9999999999999875 689999999999999999999999999999987765433 4568888
Q ss_pred hhccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGV 295 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~ 295 (525)
....|+..+|...|.++++. ..+-++.+||.++... ++...|+.+|++|++. ..+.++.+||.+|..
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~-----Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke---- 264 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQ-----GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE---- 264 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhc-----chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH----
Confidence 99999999999999999664 7888999999999777 4999999999999986 568999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~ 371 (525)
.+.+++|+..|.+|+... ++.++.+||-+|.. +|..+-|+..|+++++. +.++++.+||..+.. .++
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-----qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd----~G~ 335 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-----QGLLDLAIDTYKRALELQPNFPDAYNNLANALKD----KGS 335 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcchhhccceEEEEec-----cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----ccc
Confidence 999999999999998764 88999999999976 78999999999999987 689999999999999 999
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHH
Q 009801 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 372 ~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
..+|..+|.+++.. .+++++++||.+|.. .+.++.|...|+++++..+ ..++.+||.+|.++|++++|+.+|
T Consensus 336 V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 99999999999988 799999999999998 9999999999999999976 678999999999999999999999
Q ss_pred HHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Q 009801 448 SRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYY 516 (525)
Q Consensus 448 ~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~ 516 (525)
++|+.. ...+++.|+|..|-. +++...|+..|.+|+..+ -.+|+.+||.+|..
T Consensus 412 kealrI~P~fAda~~NmGnt~ke----------------~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 412 KEALRIKPTFADALSNMGNTYKE----------------MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred HHHHhcCchHHHHHHhcchHHHH----------------hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence 999976 578899999999987 778899999999999877 58999999999973
No 3
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=6.6e-28 Score=246.77 Aligned_cols=392 Identities=31% Similarity=0.399 Sum_probs=320.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhhhcCCC-ccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcc-----ccHHHHHH-
Q 009801 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMM-RERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQ-----DMHDKAVK- 181 (525)
Q Consensus 109 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g-~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~-----~~~~~A~~- 181 (525)
..+...++.+.+.++..+...++..+..|.+ ...+..++...|...+..++..+...++..+... ...+.++.
T Consensus 108 ~~~~~~~~~~~~sg~~~a~~~l~~~~~~~~~~~~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~ 187 (552)
T KOG1550|consen 108 EFAVEEYELAAKSGNPKAHRNLGFKYLSGLSGVTSSQAKALVHYELSALGSNSPSSMRLGFSYLHGLGGVRRSEEKALSK 187 (552)
T ss_pred cccchhhhcccccCCHHHHHHHHHhhhhhcCCCCccHhhcchhhhccccCCCCcchhhhhhhhhccCCCccchhhHhhhh
Confidence 6788888888888999999999999999887 7888899999999997778888888888888774 34556666
Q ss_pred HHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 009801 182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRR 261 (525)
Q Consensus 182 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~ 261 (525)
.+..+................... .......+......++..+|+++++.+++.++..++..+|.+|..+..++.+
T Consensus 188 ~~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~ 263 (552)
T KOG1550|consen 188 HYNKAASSTSSDATFSLGPNAQRL----QLSLEGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQ 263 (552)
T ss_pred hhhhccCccccccccCCCcchhhh----hccccccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccc
Confidence 665554432222111111100000 0111112222222334678999999999999999999999999999779999
Q ss_pred CHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCc
Q 009801 262 DRTKALMWFSKAAD-------KGEPQSMEFLGEIYARGAGVER-NYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 262 ~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 333 (525)
|.++|+.||+.+++ .+++.+.+.+|.+|..|.++.. |++.|+.+|.++++.+++.+++.+|.++..|. ..
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~--~~ 341 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT--KE 341 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC--cc
Confidence 99999999999988 7889999999999999988777 99999999999999999999999999999876 23
Q ss_pred cCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 334 KNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATA 413 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~ 413 (525)
.|+.+|.+||..|+..|++.|+++++.+|..|.++..+..+|..||+++++++++.+.+.++.+++.|. +.+..+..
T Consensus 342 ~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~---~~~~~~~~ 418 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV---GRYDTALA 418 (552)
T ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc---ccccHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999875 56666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCC
Q 009801 414 LYKLVAERGPWSSLSRWALESYLK----------GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCT 483 (525)
Q Consensus 414 ~~~~a~~~~~~~a~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~ 483 (525)
.+....+.+...++.+...+.... .+...+...+.++..+|++.+...++.+|+. | ..
T Consensus 419 ~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~-----------g-~g 486 (552)
T KOG1550|consen 419 LYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYY-----------G-LG 486 (552)
T ss_pred HHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeee-----------c-CC
Confidence 666666666655555444443332 2788899999999999999999999999976 3 33
Q ss_pred ChHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHcccccCC
Q 009801 484 DAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRVRHS 522 (525)
Q Consensus 484 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~ 522 (525)
+..+++.|..+|.+|.+++ +.++++||.||++|.|+++
T Consensus 487 ~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~ 524 (552)
T KOG1550|consen 487 TGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV 524 (552)
T ss_pred CCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch
Confidence 3668999999999999999 9999999999999999985
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.9e-25 Score=247.57 Aligned_cols=404 Identities=15% Similarity=0.099 Sum_probs=264.6
Q ss_pred cCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCcc
Q 009801 66 NLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 66 ~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~ 141 (525)
.+++..|...+++. ..++++..++.+|.++.. .+++++|+..|+++. ++++..+++.+|.++.. .
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~ 512 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG-------KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ----E 512 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHh-------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----C
Confidence 34555666655555 344556667777777665 667778888887754 56677777777877777 7
Q ss_pred CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC--------CCCCch-------
Q 009801 142 RNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK--------DSPVIE------- 204 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~--------~~~~~~------- 204 (525)
+++++|+++|+++++. ++..++..++.++...|++++|+.+++++++..+....... ......
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7778888888777653 46777777777777777777777777777665443211000 000000
Q ss_pred ---hhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--C
Q 009801 205 ---PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G 277 (525)
Q Consensus 205 ---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~ 277 (525)
...........++.++...|++++|+..++++.+ +.++.++..+|.++... +++++|+.+|+++++. +
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~ 667 (899)
T TIGR02917 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM-----KNYAKAITSLKRALELKPD 667 (899)
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCC
Confidence 0000011223344444455555555555555432 23445555555555444 2555555555555443 3
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhH
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGG 354 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a 354 (525)
+..++..++.++.. .+++++|+..+++..+.. ++..+..+|.++.. .+++++|+.+|+++++.. +..+
T Consensus 668 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~ 738 (899)
T TIGR02917 668 NTEAQIGLAQLLLA----AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR-----QKDYPAAIQAYRKALKRAPSSQN 738 (899)
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCCCchH
Confidence 34455555555555 555555555555544432 45556666666655 457888888888877652 3466
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW 430 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l 430 (525)
...++.++.. .+++++|+..++++++. ++..+++.+|.+|.. .+++++|+.+|+++++..| +.++..+
T Consensus 739 ~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 739 AIKLHRALLA----SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA----QKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7778888887 78888888888887765 567788888888887 8888888888888888764 5567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHH
Q 009801 431 ALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHA 506 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 506 (525)
++++...|+ .+|+.+++++++. +++..+.++|.++.. .+++++|+.+|+++++.+ ++++
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE----------------KGEADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhhCCCChHH
Confidence 888888888 7788888888775 577778888888877 678999999999999865 6889
Q ss_pred HHHHHHHHHccccc
Q 009801 507 ALLIGDAYYYGRVR 520 (525)
Q Consensus 507 ~~~lg~~y~~g~g~ 520 (525)
++.++.+|. ..|.
T Consensus 874 ~~~l~~~~~-~~g~ 886 (899)
T TIGR02917 874 RYHLALALL-ATGR 886 (899)
T ss_pred HHHHHHHHH-HcCC
Confidence 999999987 4443
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=3.9e-25 Score=232.85 Aligned_cols=369 Identities=17% Similarity=0.048 Sum_probs=292.8
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhc-CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQ 161 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~ 161 (525)
+..+..+|..++. .+++++|+..|+++.+. .++..+.++|.+|.. .+++++|+..++++++. ++..
T Consensus 127 a~~~k~~G~~~~~-------~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~ 195 (615)
T TIGR00990 127 AAKLKEKGNKAYR-------NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNA----LGDWEKVVEDTTAALELDPDYSK 195 (615)
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCCHH
Confidence 3445677777776 88999999999997643 357888999999998 89999999999999875 5889
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhhh----------------------hccCCCCCch---------------
Q 009801 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF----------------------LISKDSPVIE--------------- 204 (525)
Q Consensus 162 a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~----------------------~~~~~~~~~~--------------- 204 (525)
+++.+|.+|...|++++|+..|..+...++... ....+.....
T Consensus 196 a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 999999999999999999988866543211000 0000000000
Q ss_pred -------hhhhcccc---hhhhhHh---hhccCCcHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCccCHHHH
Q 009801 205 -------PIRIHNGA---EENKGAL---RKSRGEDDEAFQILEYQAQK-----GNAGAMYKIGLFYYFGLRGLRRDRTKA 266 (525)
Q Consensus 205 -------~~~~~~~~---~~~~~~~---~~~~~~~~~A~~~~~~~~~~-----~~~~a~~~Lg~~y~~~~~~~~~~~~~A 266 (525)
...+.... ...++.. ....+++++|++.|+++++. ..+.++..+|.++... +++++|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~-----g~~~eA 350 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK-----GKHLEA 350 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-----CCHHHH
Confidence 00000000 0111111 12346899999999999864 4677899999999887 499999
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 009801 267 LMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (525)
Q Consensus 267 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~ 342 (525)
+.+|+++++. +++.++..+|.++.. .+++++|+.+|+++++.. ++.+++.+|.++.. .|++++|+.+
T Consensus 351 ~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~ 421 (615)
T TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLE----LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-----KGEFAQAGKD 421 (615)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHH
Confidence 9999999875 567899999999998 999999999999998874 79999999999987 6799999999
Q ss_pred HHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 343 FEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418 (525)
Q Consensus 343 ~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a 418 (525)
|+++++. ++..++..+|.++.. .+++++|+..|+++++. .++.++..+|.++.. .+++++|+..|+++
T Consensus 422 ~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~A 493 (615)
T TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD----QNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence 9999987 567889999999999 99999999999999876 678999999999998 99999999999999
Q ss_pred HHcCChH--------HHHHHHHHHHh-cCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHh
Q 009801 419 AERGPWS--------SLSRWALESYL-KGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAER 487 (525)
Q Consensus 419 ~~~~~~~--------a~~~l~~~~~~-~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 487 (525)
++..+.. .+...+..++. .|++++|+.+++++++. .+..++..+|.++.. .++
T Consensus 494 l~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~----------------~g~ 557 (615)
T TIGR00990 494 IELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQ----------------QGD 557 (615)
T ss_pred HhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----------------ccC
Confidence 9986421 12233334444 79999999999999877 466688899999988 778
Q ss_pred HHHHHHHHHHHHhCC
Q 009801 488 HQCAHSLWWQASEQG 502 (525)
Q Consensus 488 ~~~A~~~~~~a~~~~ 502 (525)
+++|+.+|+++++..
T Consensus 558 ~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 558 VDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998765
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.1e-24 Score=241.53 Aligned_cols=401 Identities=17% Similarity=0.145 Sum_probs=288.8
Q ss_pred ccCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCc
Q 009801 65 ENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMR 140 (525)
Q Consensus 65 ~~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~ 140 (525)
..+++..|+..|+++ ..+.++.+.+.++..++. .+++++|+..+++.. .++++..+..+|.+|..
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 477 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLR-------SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG---- 477 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh-------cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHh----
Confidence 456778888888887 445566777777777765 788999999999954 56788999999999998
Q ss_pred cCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc--------CCCCCchhh----
Q 009801 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS--------KDSPVIEPI---- 206 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~--------~~~~~~~~~---- 206 (525)
.+++++|+.+|+++++ .++..+++.+|.++...|++++|+..|+++++..+.+.... .........
T Consensus 478 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999999999976 46889999999999999999999999999987654432110 000000000
Q ss_pred ---hh---cccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--
Q 009801 207 ---RI---HNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-- 276 (525)
Q Consensus 207 ---~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-- 276 (525)
.. .......++.++...|++++|+..+++..+ +.++.++..+|.++... +++++|+.+|+++++.
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA-----GDLNKAVSSFKKLLALQP 632 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCC
Confidence 00 011123445555666666677766666643 35666677777777665 3777777777776653
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
.++.++..+|.+|.. .+++++|+.+|+++++.. +..++..++.++.. .+++++|+.++++..+. .++
T Consensus 633 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~ 703 (899)
T TIGR02917 633 DSALALLLLADAYAV----MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA-----AKRTESAKKIAKSLQKQHPKAA 703 (899)
T ss_pred CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCcCCh
Confidence 456666677777766 677777777777776543 56666667766654 45677777777766654 355
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (525)
..+..+|.++.. .+++++|+.+|++++.. .+......++.++.. .+++++|+..++++++..+ ..+++.
T Consensus 704 ~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 704 LGFELEGDLYLR----QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA----SGNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 667778888887 88888888888888776 334667778888876 7888888888888887753 567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC--CCHH
Q 009801 430 WALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEH 505 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 505 (525)
+|.++...|++++|+.+|+++++. .++.++.++++++.. .++ .+|+.+++++++. +++.
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----------------~~~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE----------------LKD-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----------------cCc-HHHHHHHHHHHhhCCCCcH
Confidence 888888888888888888888766 467778888888876 445 6688888888775 3677
Q ss_pred HHHHHHHHHH
Q 009801 506 AALLIGDAYY 515 (525)
Q Consensus 506 a~~~lg~~y~ 515 (525)
.+..+|.+|.
T Consensus 839 ~~~~~~~~~~ 848 (899)
T TIGR02917 839 ILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHH
Confidence 7778888876
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=7.6e-24 Score=223.11 Aligned_cols=338 Identities=15% Similarity=0.055 Sum_probs=273.6
Q ss_pred hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 009801 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV 202 (525)
Q Consensus 124 ~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~ 202 (525)
+..+..+|..|.. .+++++|+++|++++... ++..+.++|.+|...+++++|+..+.++++.++...
T Consensus 127 a~~~k~~G~~~~~----~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~-------- 194 (615)
T TIGR00990 127 AAKLKEKGNKAYR----NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS-------- 194 (615)
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH--------
Confidence 4557788999988 999999999999999863 577899999999999999999999999998765432
Q ss_pred chhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCC--------------------------------HHHHHHHHH
Q 009801 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN--------------------------------AGAMYKIGL 250 (525)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------~~a~~~Lg~ 250 (525)
.....++.++...|++++|+..+..+...+. ..+...+|.
T Consensus 195 --------~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~ 266 (615)
T TIGR00990 195 --------KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN 266 (615)
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 2366788899999999999887765432110 001111222
Q ss_pred HH---------------------------------HhcCCCCccCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHcC
Q 009801 251 FY---------------------------------YFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEIYARG 292 (525)
Q Consensus 251 ~y---------------------------------~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g 292 (525)
.+ ... ...+++++|+.+|+++++.+ .+.++..+|.++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~--~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~- 343 (615)
T TIGR00990 267 YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPES--KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL- 343 (615)
T ss_pred HHHHccCCcchhhhhcccccccccccchHHHHHHHHHh--hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-
Confidence 11 100 11247899999999999753 45789999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCC
Q 009801 293 AGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 293 ~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~ 368 (525)
.+++++|+.+|+++++.. ...++..+|.++.. .+++++|+.+|+++++. +++.+++.+|.++..
T Consensus 344 ---~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~---- 411 (615)
T TIGR00990 344 ---KGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-----LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI---- 411 (615)
T ss_pred ---cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Confidence 999999999999999864 67899999999986 56999999999999876 578999999999999
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHH
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~ 444 (525)
.+++++|+.+|+++++. ++..++..+|.++.. .+++++|+..|++++...| +.++..+|.++...|++++|+
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999987 578899999999998 9999999999999998864 678889999999999999999
Q ss_pred HHHHHHHHcCh--HH------HHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 445 LLYSRMAELGY--EV------AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 445 ~~~~~a~~~~~--~~------a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
..|++|++... .. .+.+.+..++.. .+++++|+.+++++++.+ +..++..||.+|
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~---------------~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQW---------------KQDFIEAENLCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHH---------------hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999998732 11 222333333321 578999999999998875 677888999998
Q ss_pred H
Q 009801 515 Y 515 (525)
Q Consensus 515 ~ 515 (525)
.
T Consensus 553 ~ 553 (615)
T TIGR00990 553 L 553 (615)
T ss_pred H
Confidence 7
No 8
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=6.3e-25 Score=224.88 Aligned_cols=394 Identities=32% Similarity=0.411 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccc-----cHHHHHHH
Q 009801 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQD-----MHDKAVKL 182 (525)
Q Consensus 108 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~-----~~~~A~~~ 182 (525)
...++..+...+..+...+..........+.-... ...+...+..+...++..+...++..+.... ...+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sg~~~a~~~l~~~~~~~~~~~~~~~~~a~~~ 150 (552)
T KOG1550|consen 72 LSLALRSLDKAASESDTNARNDFSSSASEPDYLIF-IEFAVEEYELAAKSGNPKAHRNLGFKYLSGLSGVTSSQAKALVH 150 (552)
T ss_pred cchhHHHhhhhcccchhhhhhhhHHHhhcCCcccc-ccccchhhhcccccCCHHHHHHHHHhhhhhcCCCCccHhhcchh
Confidence 34444555555555555555555555554221111 4688889999999999999999999888754 35567777
Q ss_pred HHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHH-HHHHHHHcCCHHHHHHHH------HHHHhc
Q 009801 183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQ-ILEYQAQKGNAGAMYKIG------LFYYFG 255 (525)
Q Consensus 183 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~~a~~~Lg------~~y~~~ 255 (525)
|........ ........... ...+.......+.++. .+.....+..+.+.+.+| .+...+
T Consensus 151 y~~~~~~~~----------~~~~~~~~~~~---~~~~~~v~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 217 (552)
T KOG1550|consen 151 YELSALGSN----------SPSSMRLGFSY---LHGLGGVRRSEEKALSKHYNKAASSTSSDATFSLGPNAQRLQLSLEG 217 (552)
T ss_pred hhccccCCC----------Ccchhhhhhhh---hccCCCccchhhHhhhhhhhhccCccccccccCCCcchhhhhccccc
Confidence 665411100 00001110000 0011112334566777 777777776666666666 555555
Q ss_pred CCCCccC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHH
Q 009801 256 LRGLRRD----RTKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAAR-------QQLYSAYNGIGY 323 (525)
Q Consensus 256 ~~~~~~~----~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g-~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~ 323 (525)
.+...+ ...|+++++.+++.++..+...+|.+|..| .|+.+|.+.|+.||+.+++ .+++.+++.+|.
T Consensus 218 -~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~ 296 (552)
T KOG1550|consen 218 -EGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGR 296 (552)
T ss_pred -cCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHH
Confidence 344444 688999999999999999999999999999 9999999999999999998 788899999999
Q ss_pred HHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Q 009801 324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 324 ~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g 403 (525)
+|..|.++..-|++.|+.+|.++.+.+++.+.+.||.+|..|. ..+|..+|.+||..|++.|+..|+++++.+|..|.|
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLG 375 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Confidence 9999887655499999999999999999999999999999986 457899999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCC
Q 009801 404 LKKNLHMATALYKLVAERGPWSSLSRWALESYLK-GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFC 482 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~ 482 (525)
+..+.++|..||+++++.+++.+.+.++..+..- +++..+...+....+.++..++.+.+++.+... ..+. ..
T Consensus 376 v~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~---~~~~---~~ 449 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSE---EDLF---SR 449 (552)
T ss_pred cCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcc---cccc---cc
Confidence 9999999999999999999999888887765543 899999999999999999999999999998742 1111 11
Q ss_pred CChHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHcccccCCC
Q 009801 483 TDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRVRHSE 523 (525)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~ 523 (525)
....+...++..|.++..+|+.++...||++|++|+||.+|
T Consensus 450 ~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 450 GVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred ccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCC
Confidence 22457789999999999999999999999999999999886
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.2e-23 Score=235.69 Aligned_cols=385 Identities=13% Similarity=0.064 Sum_probs=288.4
Q ss_pred ccCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh--cCChH--------------H
Q 009801 65 ENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPH--------------A 126 (525)
Q Consensus 65 ~~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~--------------a 126 (525)
..+++.+|+..|+++ .+|+++++++.+|.+++. .+++++|+.+|+++.+ +.+.. .
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~-------~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQ-------QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 346788899999888 667889999999999887 8899999999999764 43332 1
Q ss_pred HHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCC-----
Q 009801 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD----- 199 (525)
Q Consensus 127 ~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~----- 199 (525)
...+|.++.. .+++++|+..|++++.. ++..+++.||.++...|++++|++.|+++++..+.+......
T Consensus 354 ~~~~g~~~~~----~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 354 LIQQGDAALK----ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2345777777 88999999999999874 688999999999999999999999999999876553211000
Q ss_pred --CCCchhh-------------------hhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcC
Q 009801 200 --SPVIEPI-------------------RIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGL 256 (525)
Q Consensus 200 --~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~ 256 (525)
...-... .+........+.++...|++++|++.+++++. |+++.+++.+|.+|...+
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 0000000 00011122345556667777777777777644 467777777777777663
Q ss_pred CCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHH
Q 009801 257 RGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL------------YSAYNGIG 322 (525)
Q Consensus 257 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~------------~~a~~~lg 322 (525)
++++|+..|+++++. +++.+++.++.++.. .++.++|+.+++++..... ......++
T Consensus 510 -----~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 510 -----QRSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred -----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 777777777777653 566777777766666 6777777777776543211 11123445
Q ss_pred HHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 009801 323 YLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHT 400 (525)
Q Consensus 323 ~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~ 400 (525)
..+.. .|++++|+.+++ ....++..+..+|.+|.. .+++++|+..|+++++. +++.++..++.+|..
T Consensus 581 ~~l~~-----~G~~~eA~~~l~--~~p~~~~~~~~La~~~~~----~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 581 NRLRD-----SGKEAEAEALLR--QQPPSTRIDLTLADWAQQ----RGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHH-----CCCHHHHHHHHH--hCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 55544 457888888777 244678889999999999 99999999999999976 789999999999998
Q ss_pred CCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--h------HHHHHHHHHHHhhhC
Q 009801 401 GVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y------EVAQSNAAWILDKYG 470 (525)
Q Consensus 401 g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~------~~a~~~la~~~~~~~ 470 (525)
.+++++|+..++++++.. +..++..+|.++...|++++|+..|++++... + ...+..+|.++..
T Consensus 650 ----~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~-- 723 (1157)
T PRK11447 650 ----QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ-- 723 (1157)
T ss_pred ----CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH--
Confidence 899999999999999875 46778899999999999999999999998752 1 2345567888877
Q ss_pred CCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 471 EGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
.+++++|+.+|++|+.
T Consensus 724 --------------~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 724 --------------TGQPQQALETYKDAMV 739 (1157)
T ss_pred --------------cCCHHHHHHHHHHHHh
Confidence 6789999999999974
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2e-22 Score=225.88 Aligned_cols=352 Identities=14% Similarity=0.091 Sum_probs=260.2
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--CHH--------------HHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG--NIQ--------------SKMAV 166 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~--------------a~~~l 166 (525)
.+++++|+..|+++. +|.++.+++.||.+|.. .+++++|+.+|+++++.+ +.. ....+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQ----QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 678999999999964 67899999999999998 899999999999998742 221 23456
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHH
Q 009801 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGA 244 (525)
Q Consensus 167 a~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a 244 (525)
|..+...+++++|+..|+++++..+.+. .....++.++...|++++|++.|+++.. ++++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~----------------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDS----------------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8888999999999999999998755432 2355688999999999999999999865 578889
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 245 MYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 245 ~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
+..++.+|... ++++|+.++++..... ....+..+|.++.. .+++++|+.+|+++++..
T Consensus 422 ~~~L~~l~~~~------~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~----~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 422 VRGLANLYRQQ------SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN----QGKWAQAAELQRQRLALD 491 (1157)
T ss_pred HHHHHHHHHhc------CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 99999988543 5566666655422110 11234455666665 666666666666666543
Q ss_pred --CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH-------
Q 009801 314 --LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA------- 382 (525)
Q Consensus 314 --~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a------- 382 (525)
++.+++.+|.+|.. .+++++|+..++++++. +++.+++.++.++.. .++.++|+..++++
T Consensus 492 P~~~~~~~~LA~~~~~-----~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQ-----AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcCh
Confidence 55566666666654 44666666666666543 355555555555544 44555554444331
Q ss_pred -----------------------------------HHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 383 -----------------------------------ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 383 -----------------------------------~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
....++..+..+|.++.. .+++++|+..|+++++..| +.
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~----~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ----RGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH
Confidence 123566788899999998 9999999999999999874 77
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG- 502 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 502 (525)
++..++.++...|++++|+..++++++. .++.++..+|.++.. .+++++|+.+|++++...
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~----------------~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA----------------LGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh----------------CCCHHHHHHHHHHHhhhCc
Confidence 8999999999999999999999999876 577888999999987 678999999999998753
Q ss_pred -C------HHHHHHHHHHHH
Q 009801 503 -N------EHAALLIGDAYY 515 (525)
Q Consensus 503 -~------~~a~~~lg~~y~ 515 (525)
+ ...+..+|.+|.
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHH
Confidence 1 134455677776
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.5e-22 Score=200.68 Aligned_cols=396 Identities=18% Similarity=0.186 Sum_probs=223.5
Q ss_pred CCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCC
Q 009801 68 DPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERN 143 (525)
Q Consensus 68 ~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d 143 (525)
+...|...|+++ ++|.+.+++..||.+-+. +.+...+++++..+.++ .++.||.+...|+..|.. .+|
T Consensus 214 ~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~----~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~d 285 (1018)
T KOG2002|consen 214 MSEKALLAFERALQLDPTCVSALVALGEVDLN----FNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKD 285 (1018)
T ss_pred chhhHHHHHHHHHhcChhhHHHHHHHHHHHHH----ccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----ccc
Confidence 344555556666 555556666666655443 22345566666666664 345566666666666665 666
Q ss_pred HHHHHHHHHHHHcCC-----CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhH
Q 009801 144 KGKAFLYHHFAAEGG-----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (525)
Q Consensus 144 ~~~A~~~~~~a~~~~-----~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (525)
+..+..+..-++... -.++++.+|..|..+|++++|..+|.++...++.++.. +...+|.
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l---------------~~~GlgQ 350 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL---------------PLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc---------------cccchhH
Confidence 666666666665432 23456666666666666666666666666555544221 1334555
Q ss_pred hhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHH-----
Q 009801 219 LRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIY----- 289 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y----- 289 (525)
++...|+...|+..|++... |++.+.+.-||.+|.... ......++|..+..++++. .+..+|..++.+|
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~-~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA-KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence 55555555555555555433 245555555555554331 1111234444444444433 2334444444444
Q ss_pred ---------------------------------HcCCCCCCCHHHHHHHHHHHHHc----C--------CHHHHHHHHHH
Q 009801 290 ---------------------------------ARGAGVERNYTKALEWLTHAARQ----Q--------LYSAYNGIGYL 324 (525)
Q Consensus 290 ---------------------------------~~g~~~~~~~~~A~~~~~~a~~~----~--------~~~a~~~lg~~ 324 (525)
+. .|++.+|...|..|... . +....++|+.+
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~----~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQIPPEVLNNVASLHFR----LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH----hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 44 44444444444444322 0 01123444443
Q ss_pred HHhCCCCCccCHHHHHHHHHHHH----------------------------------hC--CChhHHHHHHHHHHcCCCC
Q 009801 325 YVKGYGVEKKNYTKAKEYFEKAA----------------------------------DN--EEAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 325 ~~~g~~~~~~~~~~A~~~~~~a~----------------------------------~~--~~~~a~~~lg~~y~~g~~~ 368 (525)
+.. ..+++.|.+.|+..+ +. .+|.++..+|.+|..
T Consensus 506 ~E~-----l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~---- 576 (1018)
T KOG2002|consen 506 LEE-----LHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK---- 576 (1018)
T ss_pred HHh-----hhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh----
Confidence 332 112333333333222 21 123333333333333
Q ss_pred cCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCC--------CcCCHHHHHHHHHHHHHcCChHHH--HHHHHHH
Q 009801 369 KRDVKLACKYFLVAANA----GHQKAFYQLAKMFHTGVG--------LKKNLHMATALYKLVAERGPWSSL--SRWALES 434 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~----~~~~a~~~l~~~y~~g~g--------~~~~~~~A~~~~~~a~~~~~~~a~--~~l~~~~ 434 (525)
...+..|..-|+..... .++.+...||.++..... ..+.+++|++.|.+++..+|.+.+ ..+|.++
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVL 656 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhh
Confidence 23333333322222211 234555555555543222 234678899999999999976655 4788999
Q ss_pred HhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC----CCHHHHH
Q 009801 435 YLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ----GNEHAAL 508 (525)
Q Consensus 435 ~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~ 508 (525)
...|++.+|+..|.+..+. ..++++.|+|.||.. .++|..|++.|++.+.. ++++.+.
T Consensus 657 A~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e----------------~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE----------------QGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred hhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH----------------HHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 9999999999999999887 468899999999988 88999999999998864 4799999
Q ss_pred HHHHHHHc
Q 009801 509 LIGDAYYY 516 (525)
Q Consensus 509 ~lg~~y~~ 516 (525)
.||.+|+.
T Consensus 721 ~Lara~y~ 728 (1018)
T KOG2002|consen 721 YLARAWYE 728 (1018)
T ss_pred HHHHHHHH
Confidence 99999873
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=5.8e-21 Score=200.77 Aligned_cols=306 Identities=8% Similarity=-0.073 Sum_probs=238.3
Q ss_pred hHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+++++|+..++.. ..+.++++++.+|..... .+++++|+..|++++. +++..++..+|.++...|++++|+
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~----~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA----SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 67788888888773 467888888888887776 7888888888888765 467888888888888888888888
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCC
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRG 258 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~ 258 (525)
..|+++++..+.+. .....++.++...|++++|+..+++... ++++.++..++. +...
T Consensus 131 ~~l~~Al~l~P~~~----------------~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~--- 190 (656)
T PRK15174 131 DLAEQAWLAFSGNS----------------QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNK--- 190 (656)
T ss_pred HHHHHHHHhCCCcH----------------HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHc---
Confidence 88888877654432 1245567778888888888888877643 467777766654 4444
Q ss_pred CccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCc
Q 009801 259 LRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 259 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~ 333 (525)
+++++|+..++++++.. .......++.++.. .+++++|+..|+++++.. ++.++..+|.++.. .
T Consensus 191 --g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~----~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-----~ 259 (656)
T PRK15174 191 --SRLPEDHDLARALLPFFALERQESAGLAVDTLCA----VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-----S 259 (656)
T ss_pred --CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----c
Confidence 38899999998887753 23344556777777 889999999999988764 78888889988876 4
Q ss_pred cCHHH----HHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc
Q 009801 334 KNYTK----AKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 334 ~~~~~----A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~ 405 (525)
|++++ |+.+|+++++. +++.++..+|.++.. .+++++|+.+++++++. +++.++.++|.++.. .
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~----~ 331 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ----V 331 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----C
Confidence 46664 78899988865 577788899999998 89999999999988876 677888888998887 8
Q ss_pred CCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 406 KNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~~--a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++++|+..|+++++.+|.. ....+|.++...|++++|+..|+++++.
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 89999999999988876543 4455688888899999999999988766
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.9e-21 Score=196.10 Aligned_cols=364 Identities=16% Similarity=0.110 Sum_probs=283.6
Q ss_pred ccccCCCCCCCccccCCCC--CC-CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcC
Q 009801 63 TEENLDPGSWSPVFEPSID--PG-AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMG 137 (525)
Q Consensus 63 ~~~~~~~~~a~~~~~~~~~--~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g 137 (525)
....+||..|..+|.+++. |. .++.....|.+.+. .++.+.|+.-++++. +|.+..++..||.+-..-
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k-------l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~ 246 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWK-------LGMSEKALLAFERALQLDPTCVSALVALGEVDLNF 246 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh-------ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc
Confidence 4455889999999999622 22 25555566666665 788999999999975 778899999999876542
Q ss_pred CCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhh
Q 009801 138 MMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN 215 (525)
Q Consensus 138 ~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (525)
. -...+.+++..+.+|-. ..|+.++..|+..+...++|..+.+++..++......... ......
T Consensus 247 ~-d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~-------------aes~Y~ 312 (1018)
T KOG2002|consen 247 N-DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK-------------AESFYQ 312 (1018)
T ss_pred c-chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH-------------HHHHHH
Confidence 2 25678899999999865 4699999999999999999999999999988765332211 123677
Q ss_pred hhHhhhccCCcHHHHHHHHHHHHc--CC-HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009801 216 KGALRKSRGEDDEAFQILEYQAQK--GN-AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYA 290 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~~~~--~~-~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 290 (525)
++..+..+|++++|.++|.++... ++ .-.++.||++|...+ +++.|+.+|++.++. ++...+..||.+|.
T Consensus 313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~-----dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 313 LGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG-----DLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc-----hHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 899999999999999999998665 33 678999999999995 999999999999875 78899999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-------CChhHHHHHHHH
Q 009801 291 RGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EEAGGHYNLGVM 361 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~ 361 (525)
......-..++|..++.++.+.. +.+++..++.+|.. +|+..++.+|.+|++. -.++.++++|..
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~------~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ------TDPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh------cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 72111225688999999998764 78889999999975 3777778888888743 356788899999
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHc----CC--------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 362 YYKGIGVKRDVKLACKYFLVAANA----GH--------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 362 y~~g~~~~~~~~~A~~~~~~a~~~----~~--------~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
++. .+++.+|...|.+|... .+ ....++++.+++. ..+++.|.+.|+.++...| .+++
T Consensus 462 hf~----~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~----l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 462 HFR----LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE----LHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHH----hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHCchhHHHH
Confidence 998 89999999999888754 11 1247888888887 7888888888888887764 6777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
.++|......++..+|..++..++.. .++.++.-+|.++
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 78887777778888888888888654 3555666666444
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=4.3e-21 Score=201.73 Aligned_cols=339 Identities=10% Similarity=-0.090 Sum_probs=276.9
Q ss_pred ccccCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCC
Q 009801 63 TEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGM 138 (525)
Q Consensus 63 ~~~~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~ 138 (525)
....+++.+|..+++.. ..|.++++++.+|...+. .+++++|+..++++ .+|+++.++..+|.++..
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~-------~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~-- 122 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA-------SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK-- 122 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--
Confidence 34457788888888777 778889999999998886 88899999999995 578999999999999998
Q ss_pred CccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhh
Q 009801 139 MRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK 216 (525)
Q Consensus 139 g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (525)
.+++++|+..|++++. .++..++..++.++...|++++|+..+++++...+..... ....
T Consensus 123 --~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a----------------~~~~ 184 (656)
T PRK15174 123 --SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM----------------IATC 184 (656)
T ss_pred --cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH----------------HHHH
Confidence 8999999999999987 5789999999999999999999999999887664432111 1122
Q ss_pred hHhhhccCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHc
Q 009801 217 GALRKSRGEDDEAFQILEYQAQK---GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYAR 291 (525)
Q Consensus 217 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 291 (525)
..+...|++++|+..+++.... ........++.++... +++++|+..|++++.. +++.++..+|.+|..
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-----g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~ 258 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-----GKYQEAIQTGESALARGLDGAALRRSLGLAYYQ 258 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 2467789999999999997665 2344455667788777 4999999999999875 678899999999999
Q ss_pred CCCCCCCHHH----HHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHH
Q 009801 292 GAGVERNYTK----ALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYY 363 (525)
Q Consensus 292 g~~~~~~~~~----A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~ 363 (525)
.+++++ |+..|+++++. +++.++..+|.++.. .+++++|+.+++++++. +++.++..+|.+|.
T Consensus 259 ----~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-----~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 259 ----SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-----TGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred ----cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888875 89999999876 478899999999987 67999999999999876 57888999999999
Q ss_pred cCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh-------HHHHHHHHHH
Q 009801 364 KGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-------SSLSRWALES 434 (525)
Q Consensus 364 ~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-------~a~~~l~~~~ 434 (525)
. .+++++|+..|+++++. .++.....+|.++.. .+++++|+..|+++++..|. ++...+...+
T Consensus 330 ~----~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~----~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~ 401 (656)
T PRK15174 330 Q----VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ----AGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQI 401 (656)
T ss_pred H----CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHH
Confidence 9 99999999999999976 344556667888887 89999999999999988642 3444555555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009801 435 YLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 435 ~~~g~~~~A~~~~~~a~ 451 (525)
...+...+...|....+
T Consensus 402 ~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 402 SAVNLPPERLDWAWEVA 418 (656)
T ss_pred HhcCCccchhhHHHHHh
Confidence 55555555545554443
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=3.8e-19 Score=191.02 Aligned_cols=384 Identities=11% Similarity=0.033 Sum_probs=285.0
Q ss_pred CCCCCCCccccCCC--CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccC
Q 009801 67 LDPGSWSPVFEPSI--DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRER 142 (525)
Q Consensus 67 ~~~~~a~~~~~~~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~ 142 (525)
+++..|+..++++. ++.++.++..+|..+.. .+++++|+..++++ .+|+++.+...+|.++.. .+
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~----~g 97 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRN-------LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD----AG 97 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CC
Confidence 45566666677764 44445557888887776 78889999999995 467888888999988887 88
Q ss_pred CHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 143 NKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 143 d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
++++|+..+++++.. ++.. +..+|.++...+++++|+..|+++++..|.+.. ....++.++
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~----------------~~~~la~~l 160 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ----------------YPTEYVQAL 160 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----------------HHHHHHHHH
Confidence 999999999998763 5777 888999999999999999999999887665432 234466677
Q ss_pred hccCCcHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCccCH---HHHHHHHHHHHhc--CCH-------H
Q 009801 221 KSRGEDDEAFQILEYQAQKGNAG--------AMYKIGLFYYFGLRGLRRDR---TKALMWFSKAADK--GEP-------Q 280 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~~~~~--------a~~~Lg~~y~~~~~~~~~~~---~~A~~~~~~a~~~--~~~-------~ 280 (525)
...+..++|++.++++.. +|. ....+..++........+.+ ++|+..++++++. .++ .
T Consensus 161 ~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 777888888888876443 211 22223333322111111234 7788899888853 222 2
Q ss_pred HHHH-HHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC-----
Q 009801 281 SMEF-LGEIYARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE----- 351 (525)
Q Consensus 281 a~~~-Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~----- 351 (525)
+... ++.++ . .+++++|+..|+++++.+ ...+...+|.+|.. .+++++|+.+|+++++.+.
T Consensus 239 a~~d~l~~Ll-~----~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~-----~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 239 ARIDRLGALL-A----RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK-----LHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred HHHHHHHHHH-H----hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh-----cCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2222 55554 4 679999999999998875 23455667888876 5699999999999887642
Q ss_pred -hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 352 -AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-----------------QKAFYQLAKMFHTGVGLKKNLHMATA 413 (525)
Q Consensus 352 -~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~l~~~y~~g~g~~~~~~~A~~ 413 (525)
......|+.++.. .+++++|+.+++++.+... ..+...++.++.. .+++++|+.
T Consensus 309 ~~~~~~~L~~a~~~----~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~~ 380 (765)
T PRK10049 309 SDEELADLFYSLLE----SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAEM 380 (765)
T ss_pred ChHHHHHHHHHHHh----cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 2456778888888 9999999999999887531 3467788888887 899999999
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHH
Q 009801 414 LYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (525)
Q Consensus 414 ~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (525)
.+++++...| ...+..+|.++...|++++|+..++++++. ++..+.+.+|..+.. .++++
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~----------------~~~~~ 444 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD----------------LQEWR 444 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----------------hCCHH
Confidence 9999998864 678889999999999999999999999886 577788889988877 67899
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHH
Q 009801 490 CAHSLWWQASEQG-NEHAALLIGDAY 514 (525)
Q Consensus 490 ~A~~~~~~a~~~~-~~~a~~~lg~~y 514 (525)
+|...++++++.. +......|...+
T Consensus 445 ~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 445 QMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999998764 222333444444
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=5.8e-19 Score=189.58 Aligned_cols=358 Identities=11% Similarity=-0.002 Sum_probs=282.9
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.++.++|+..+++.. ++..+.++..+|.++.. .++.++|+.+|++++. ++++.+...++.++...+++++|+
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRN----LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 788999999999965 56667789999999999 9999999999999876 468999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCC
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRG 258 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~ 258 (525)
..++++++..+.+. . ...++.++...|++++|+..++++.. |+++.++..++.++...
T Consensus 104 ~~l~~~l~~~P~~~----------------~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~--- 163 (765)
T PRK10049 104 VKAKQLVSGAPDKA----------------N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN--- 163 (765)
T ss_pred HHHHHHHHhCCCCH----------------H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---
Confidence 99999988755432 2 44578889999999999999999855 58999999999999877
Q ss_pred CccCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHc-CCCCCCCH---HHHHHHHHHHHHc--CCHH-------HHH
Q 009801 259 LRRDRTKALMWFSKAADKGE------PQSMEFLGEIYAR-GAGVERNY---TKALEWLTHAARQ--QLYS-------AYN 319 (525)
Q Consensus 259 ~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~-g~~~~~~~---~~A~~~~~~a~~~--~~~~-------a~~ 319 (525)
+..++|+..++++..... ......+..++.. +....+++ ++|+..++++++. .++. +..
T Consensus 164 --~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 164 --RLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred --CChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 488999999987765210 0122222233221 11112334 7899999998864 1221 222
Q ss_pred H-HHHHHHhCCCCCccCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------HH
Q 009801 320 G-IGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH------QK 389 (525)
Q Consensus 320 ~-lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~------~~ 389 (525)
. ++.++. .+++++|+..|+++++.+. ..+...+|.+|.. .+++++|+.+|+++++... ..
T Consensus 242 d~l~~Ll~------~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~----~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 242 DRLGALLA------RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK----LHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred HHHHHHHH------hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 2 555553 3589999999999998752 3456678999999 9999999999999887642 34
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----------------WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
....++.++.. .+++++|+.+++++.+..| ..++..++.++...|++++|+..+++++.
T Consensus 312 ~~~~L~~a~~~----~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 312 ELADLFYSLLE----SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHHHHHHHHHh----cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777777776 8999999999999988753 24667899999999999999999999987
Q ss_pred c--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcccc
Q 009801 453 L--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYGRV 519 (525)
Q Consensus 453 ~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g 519 (525)
. +++.++.++|.++.. .+++++|+..++++++.. ++.+.+.+|.++. +.|
T Consensus 388 ~~P~n~~l~~~lA~l~~~----------------~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al-~~~ 441 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQA----------------RGWPRAAENELKKAEVLEPRNINLEVEQAWTAL-DLQ 441 (765)
T ss_pred hCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-HhC
Confidence 5 789999999999988 678999999999998864 7888888888776 443
No 17
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.85 E-value=4.8e-19 Score=169.38 Aligned_cols=204 Identities=33% Similarity=0.473 Sum_probs=130.7
Q ss_pred ccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHH
Q 009801 222 SRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTK 301 (525)
Q Consensus 222 ~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~ 301 (525)
..+++.++..+++++...+++.+.+.++.+|..+ .+++.|..+|+.||+++.+.+++.+++.||.+|..|.|+..|..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g-~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAG-KGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhc-cCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHH
Confidence 3455666666666666666666666666666666 366666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHhC---CCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 302 ALEWLTHAARQQLYSA---YNGIGYLYVKG---YGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 302 A~~~~~~a~~~~~~~a---~~~lg~~~~~g---~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
|..||++|++.+++++ +..+|.+|..| .++.. +..+|+.+|.++.+.+++.+++.||.+|..|.|+..|..+|
T Consensus 132 A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~-~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 132 ALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY-DDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH-HHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 6666666666666666 66666666665 34433 44566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCcC----------CHHHHHHHHHHHHHcCChHHH
Q 009801 376 CKYFLVAANAGHQKAFYQLAKMFHTGVGLKK----------NLHMATALYKLVAERGPWSSL 427 (525)
Q Consensus 376 ~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~----------~~~~A~~~~~~a~~~~~~~a~ 427 (525)
+.||++|++.++..+++.++.++..|.++.+ +...|..|+.++...++..+.
T Consensus 211 ~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 211 FRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHH
Confidence 6666666666666666666666666555443 556666666665555544433
No 18
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=166.89 Aligned_cols=204 Identities=33% Similarity=0.522 Sum_probs=190.5
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHH
Q 009801 258 GLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYT 337 (525)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~ 337 (525)
....++..|+.+++++...+++.+...++.+|..|.++..|..+|..||+.+.+.+++.+++.||.+|..|.|+.. |..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~-d~~ 130 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPL-DLV 130 (292)
T ss_pred cccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCccc-CHH
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999766 999
Q ss_pred HHHHHHHHHHhCCChhH---HHHHHHHHHcC---CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 338 KAKEYFEKAADNEEAGG---HYNLGVMYYKG---IGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 338 ~A~~~~~~a~~~~~~~a---~~~lg~~y~~g---~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
+|..||++|++.+++.+ .+.+|.+|..| .++..+...|..+|.++...+++.+++.+|.+|..|.|+..|+++|
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 99999999999999999 99999999998 6777788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcChHHHHHHHH
Q 009801 412 TALYKLVAERGPWSSLSRWALESYLKG---------------DVGKAFLLYSRMAELGYEVAQSNAA 463 (525)
Q Consensus 412 ~~~~~~a~~~~~~~a~~~l~~~~~~~g---------------~~~~A~~~~~~a~~~~~~~a~~~la 463 (525)
..||++|++.++..+++.++ +++..| +...|..++.++...+...+...+-
T Consensus 211 ~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 211 FRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred HHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 99999999999988999999 677666 8899999999999998776666555
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=2.7e-17 Score=177.20 Aligned_cols=353 Identities=10% Similarity=-0.037 Sum_probs=238.0
Q ss_pred HhHHHHHHHHHH-H-HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-CCC----HHHHHHHHHHHhcc-----
Q 009801 106 RVMEEATSEVES-A-AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGN----IQSKMAVAYTYLRQ----- 173 (525)
Q Consensus 106 ~~~~~A~~~~~~-a-~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~~----~~a~~~la~~y~~~----- 173 (525)
+.+.+|....+. - ..+++..++..++..... .|+.++|..+|+++.. .++ ......|+.+|...
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ----NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 344444444444 2 237778888888887777 7778888888888776 222 22233666666553
Q ss_pred --------------------ccHHH---HHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHH
Q 009801 174 --------------------DMHDK---AVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAF 230 (525)
Q Consensus 174 --------------------~~~~~---A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 230 (525)
++..+ +...+.+++...+.+ .......+++.++.. ++..+|+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~--------------~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPS--------------YDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCC--------------CCHHHHHHHHHHHHh-CCcHHHH
Confidence 22333 334444433221110 011234566666665 6777788
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 231 QILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 231 ~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
..+.+++.. .+......+|.++... +++++|+..|++++.. .....++.+|.++.. .+++++|+.+|++
T Consensus 497 ~a~~~Al~~~Pd~~~~L~lA~al~~~-----Gr~eeAi~~~rka~~~~p~~~a~~~la~all~----~Gd~~eA~~~l~q 567 (987)
T PRK09782 497 YAWLQAEQRQPDAWQHRAVAYQAYQV-----EDYATALAAWQKISLHDMSNEDLLAAANTAQA----AGNGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHC-----CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 877776543 2222344455555555 4899999999887664 334567788888888 8889999999998
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 309 AARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 309 a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+++.. .......++..... .|++++|+.+|+++++.+ ++.++.++|.++.. .+++++|+.+|++++..
T Consensus 568 AL~l~P~~~~l~~~La~~l~~-----~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYI-----PGQPELALNDLTRSLNIAPSANAYVARATIYRQ----RHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 88764 33333444433332 368899999999988653 47788889999988 89999999999988876
Q ss_pred --CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHH
Q 009801 386 --GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQ 459 (525)
Q Consensus 386 --~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~ 459 (525)
+++.++.++|.++.. .+++++|+..|+++++..| +.+++++|.++...|++++|+.+|+++++. ++....
T Consensus 639 ~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 639 EPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred CCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 678888899988887 8889999999999988864 667888999999999999999999999876 455566
Q ss_pred HHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Q 009801 460 SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDAYY 515 (525)
Q Consensus 460 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~ 515 (525)
...|.+... ..+++.|.+-++++...+ ..-+-...|.++.
T Consensus 715 ~~~g~~~~~----------------~~~~~~a~~~~~r~~~~~~~~~a~~~~g~~~~ 755 (987)
T PRK09782 715 PLTPEQNQQ----------------RFNFRRLHEEVGRRWTFSFDSSIGLRSGAMST 755 (987)
T ss_pred hhhhHHHHH----------------HHHHHHHHHHHHHHhhcCccchhccccchHhh
Confidence 666766665 667788888788776544 1114444555444
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=4.4e-17 Score=175.56 Aligned_cols=352 Identities=10% Similarity=0.059 Sum_probs=255.0
Q ss_pred hHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHhccccHHHHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLY 183 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~~~~a~~~la~~y~~~~~~~~A~~~y 183 (525)
.++++.+..+ ++++++++- ..+...+. ....+..+.+..+...--+ .++..++..++......|+.++|..+|
T Consensus 326 ~~~~~~~~~~--~~~~~~~~~--~~~r~~~~--~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 326 EGQYDAAQKL--LATLPANEM--LEERYAVS--VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred ccHHHHHHHH--hcCCCcchH--HHHHHhhc--cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4445544433 456777763 22222222 2223344444444443334 689999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhc-------------------------cCCc---HHHHHHHHH
Q 009801 184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS-------------------------RGED---DEAFQILEY 235 (525)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~---~~A~~~~~~ 235 (525)
+++....... .....+ ...++.++.. .++. ..+...+..
T Consensus 400 ~~~~~~~~~~-------~~~~~l------~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 400 LQRYPFQGDA-------RLSQTL------MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHhcCCCccc-------ccCHHH------HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 9986521100 000000 0012222222 2222 223333333
Q ss_pred HHH--cC--CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 236 QAQ--KG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-EPQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 236 ~~~--~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
+.. ++ ++.+++.+|.++..+ ++.+|+..|.+++... +......+|.++.. .+++++|+..|++++
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~~------~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~----~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRDT------LPGVALYAWLQAEQRQPDAWQHRAVAYQAYQ----VEDYATALAAWQKIS 536 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHhC------CcHHHHHHHHHHHHhCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHh
Confidence 332 45 899999999999764 8888999999888653 23334556776677 899999999999987
Q ss_pred HcC-CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-C
Q 009801 311 RQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-G 386 (525)
Q Consensus 311 ~~~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~ 386 (525)
... .......+|.++.. .|++++|+.+|+++++.+ +......++..... .+++++|+..|+++++. .
T Consensus 537 ~~~p~~~a~~~la~all~-----~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~----~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 537 LHDMSNEDLLAAANTAQA-----AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI----PGQPELALNDLTRSLNIAP 607 (987)
T ss_pred ccCCCcHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCC
Confidence 653 45667888988876 569999999999999874 33444455555556 69999999999999987 3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNA 462 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~l 462 (525)
++.++.++|.++.. .+++++|+.+|+++++.+| +.++.++|.++...|++++|+..|+++++. +++.+++++
T Consensus 608 ~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 608 SANAYVARATIYRQ----RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 58899999999998 9999999999999999975 678889999999999999999999999976 689999999
Q ss_pred HHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 463 AWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
|.++.. .+++++|+.+|+++++.. +.+..+..|.+.
T Consensus 684 A~al~~----------------lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 684 AYVNQR----------------LDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHH----------------CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 999998 678999999999998765 566666666554
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=3.1e-17 Score=164.12 Aligned_cols=288 Identities=16% Similarity=0.150 Sum_probs=208.0
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCC---
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN--- 159 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~--- 159 (525)
....|.+|..++. .+++++|+..|+++. ++.++.+++.+|.+|.. .+++++|+..+++++....
T Consensus 35 ~~~~y~~g~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~ 103 (389)
T PRK11788 35 LSRDYFKGLNFLL-------NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR----RGEVDRAIRIHQNLLSRPDLTR 103 (389)
T ss_pred ccHHHHHHHHHHh-------cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCcHHHHHHHHHHHhcCCCCCH
Confidence 3444556665554 566777777777754 44566667777777766 6677777777776665431
Q ss_pred ---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH
Q 009801 160 ---IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (525)
Q Consensus 160 ---~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 236 (525)
..++..+|.+|...|++++|+..|+++.+.
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~----------------------------------------------- 136 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDE----------------------------------------------- 136 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----------------------------------------------
Confidence 234566666666666666666666665331
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-------PQSMEFLGEIYARGAGVERNYTKALEWLTHA 309 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a 309 (525)
.+.+..++..++.++... +++++|+..++++++.+. ...+..+|.++.. .+++++|+.+|+++
T Consensus 137 -~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 206 (389)
T PRK11788 137 -GDFAEGALQQLLEIYQQE-----KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAARALLKKA 206 (389)
T ss_pred -CcchHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 234566788888888777 489999999999887532 2245678888888 89999999999999
Q ss_pred HHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 310 ARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (525)
Q Consensus 310 ~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~ 384 (525)
++.. ...++..+|.++.. .+++++|+++++++.+.+. +.++..++.+|.. .++.++|+..++++.+
T Consensus 207 l~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 207 LAADPQCVRASILLGDLALA-----QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALE 277 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 8754 67788899999876 5699999999999987532 3567889999999 9999999999999887
Q ss_pred c-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHh---cCCHHHHHHHHHHHHHc
Q 009801 385 A-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS-RWALESYL---KGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 385 ~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-~l~~~~~~---~g~~~~A~~~~~~a~~~ 453 (525)
. .+......++.++.. .+++++|+.+++++++..|..... .+...... .|+..+|+..+++.++.
T Consensus 278 ~~p~~~~~~~la~~~~~----~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 278 EYPGADLLLALAQLLEE----QEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hCCCchHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 6 233455788888887 899999999999999987654433 23333332 45888999888877754
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.3e-16 Score=146.61 Aligned_cols=319 Identities=17% Similarity=0.137 Sum_probs=233.1
Q ss_pred CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhcc--------------------------
Q 009801 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQ-------------------------- 173 (525)
Q Consensus 122 ~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~-------------------------- 173 (525)
.++.-+|..|.++.. .+..++|+..+..++. +=+..|+..|+.+....
T Consensus 162 ~D~fllYL~Gvv~k~----~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKE----LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHh----hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 346667888888888 7888888888888876 34666666666654432
Q ss_pred ---ccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-----CCHHHH
Q 009801 174 ---DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-----GNAGAM 245 (525)
Q Consensus 174 ---~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~a~ 245 (525)
...++++.-+++....+.. .+.-.....+.+.....++++|+..|+..... ++.+.+
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~---------------~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdly 302 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFP---------------NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLY 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCC---------------ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 2222232222222221111 11112334555666777788888887776544 233333
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHH-HHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHH
Q 009801 246 YKIGLFYYFGLRGLRRDRTKALMWFSK-AAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNG 320 (525)
Q Consensus 246 ~~Lg~~y~~~~~~~~~~~~~A~~~~~~-a~~--~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 320 (525)
.+.- |. . +....+.++-+ +.+ .--++.+.-+|..|.- .++.++|+.+|++|++.+ ...++..
T Consensus 303 SN~L--Yv-~------~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSl----r~eHEKAv~YFkRALkLNp~~~~aWTL 369 (559)
T KOG1155|consen 303 SNVL--YV-K------NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSL----RSEHEKAVMYFKRALKLNPKYLSAWTL 369 (559)
T ss_pred hHHH--HH-H------hhhHHHHHHHHHHHHhccCCccceeeehhHHHH----HHhHHHHHHHHHHHHhcCcchhHHHHH
Confidence 3321 11 1 22223333332 222 2346677778888887 889999999999999876 7889999
Q ss_pred HHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 009801 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAK 396 (525)
Q Consensus 321 lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~ 396 (525)
+|.=|.. .++...|+..|++|++.+ |-.||+.||..|.. .+...-|+-+|++|... .++..+..||.
T Consensus 370 mGHEyvE-----mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 370 MGHEYVE-----MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI----MKMHFYALYYFQKALELKPNDSRLWVALGE 440 (559)
T ss_pred hhHHHHH-----hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH----hcchHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 9999975 669999999999999985 67799999999999 99999999999999976 78999999999
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------C--hHHHHHHHHHH
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAEL-------G--YEVAQSNAAWI 465 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~--~~~a~~~la~~ 465 (525)
+|.. ..+.++|+.+|++|+..++. .++..||.++-+.++..+|..+|++.++. + ...+...||..
T Consensus 441 CY~k----l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 441 CYEK----LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHH----hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 9998 99999999999999999865 89999999999999999999999999873 1 23466678877
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
..+ .+++++|-.|-.+++.-
T Consensus 517 f~k----------------~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 517 FKK----------------MKDFDEASYYATLVLKG 536 (559)
T ss_pred HHh----------------hcchHHHHHHHHHHhcC
Confidence 776 77889998887776644
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=1.7e-16 Score=158.68 Aligned_cols=290 Identities=16% Similarity=0.130 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
....+.+|..+...+++++|+..|+++++.++.+. .....++.++...|++++|+..++++...
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 98 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV----------------ELHLALGNLFRRRGEVDRAIRIHQNLLSR 98 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH----------------HHHHHHHHHHHHcCcHHHHHHHHHHHhcC
Confidence 34556677888888899999999999887654332 23556788889999999999999987765
Q ss_pred CC------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 240 GN------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
.. ..++..||.+|...+ ++++|+.+|+++++. .+..++..++.++.. .+++++|+..++++++
T Consensus 99 ~~~~~~~~~~~~~~La~~~~~~g-----~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 99 PDLTREQRLLALQELGQDYLKAG-----LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ----EKDWQKAIDVAERLEK 169 (389)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----hchHHHHHHHHHHHHH
Confidence 32 357888999998874 999999999999875 456788899999998 9999999999999987
Q ss_pred cCC-------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 312 QQL-------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 312 ~~~-------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
.+. ...+..+|.++.. .+++++|+.+|+++++. ++..+++.+|.+|.. .+++++|+.+++++
T Consensus 170 ~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 240 (389)
T PRK11788 170 LGGDSLRVEIAHFYCELAQQALA-----RGDLDAARALLKKALAADPQCVRASILLGDLALA----QGDYAAAIEALERV 240 (389)
T ss_pred hcCCcchHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence 642 1245567877766 57999999999999875 467788999999999 99999999999999
Q ss_pred HHcCC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHH-
Q 009801 383 ANAGH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEV- 457 (525)
Q Consensus 383 ~~~~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~- 457 (525)
.+.+. ..++..++.+|.. .+++++|+..++++++..| ......++.++...|++++|+..++++++.....
T Consensus 241 ~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 241 EEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 87632 3567788888887 8999999999999998764 3344788999999999999999999998874222
Q ss_pred HHH-HHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 458 AQS-NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 458 a~~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
.+. .++..+... + .++..+|+..+++.++.
T Consensus 317 ~~~~l~~~~~~~~----------~----~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 317 GFHRLLDYHLAEA----------E----EGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHHhhhcc----------C----CccchhHHHHHHHHHHH
Confidence 222 233322110 0 23567788777776653
No 24
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.2e-16 Score=148.77 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=62.6
Q ss_pred hHhHHHHHHHHHHHHhc----CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHhcc
Q 009801 105 VRVMEEATSEVESAAME----GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------GNIQSKMAVAYTYLRQ 173 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~~~a~~~la~~y~~~ 173 (525)
..-+.+|+.-|+-.++. +...-..++|.+|.. ..++.+|+++|+.|+++ -.+..+.++|..+.+.
T Consensus 214 ndm~~ealntyeiivknkmf~nag~lkmnigni~~k----kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 214 NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFK----KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred hHHHHHHhhhhhhhhcccccCCCceeeeeecceeee----hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 34467888888775532 223334678999988 88999999999999875 1456778888888888
Q ss_pred ccHHHHHHHHHHHHHHHHh
Q 009801 174 DMHDKAVKLYAELAEIAVN 192 (525)
Q Consensus 174 ~~~~~A~~~y~~~~~~~~~ 192 (525)
|.|+.|+..|..+++..|+
T Consensus 290 gqy~dainsfdh~m~~~pn 308 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEEAPN 308 (840)
T ss_pred ccchhhHhhHHHHHHhCcc
Confidence 9999999888877766543
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2e-15 Score=142.30 Aligned_cols=356 Identities=18% Similarity=0.102 Sum_probs=266.9
Q ss_pred hHhHHHHHHHHHHHHhc--CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.++|++|+++|.+|++. ..+..+.+++-+|.. .+|+++-++.-.+|++. .+..|++.-+..+...|++++|+
T Consensus 128 ~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~----lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYES----LGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHH----HhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence 67899999999998754 447778899999999 99999999999999886 48899999999999999999887
Q ss_pred HHHH------------------HHHHH----HHhhhhc-cCCCCCchhhhhc------------------c----cchhh
Q 009801 181 KLYA------------------ELAEI----AVNSFLI-SKDSPVIEPIRIH------------------N----GAEEN 215 (525)
Q Consensus 181 ~~y~------------------~~~~~----~~~~~~~-~~~~~~~~~~~~~------------------~----~~~~~ 215 (525)
.-.. +.+.. .-..-.. +....+..+.-+. . .....
T Consensus 204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 6322 11111 0000001 0111111110000 0 00011
Q ss_pred hhHhh-hccCCcHHHHHHHHHHHHc------CC---------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC--
Q 009801 216 KGALR-KSRGEDDEAFQILEYQAQK------GN---------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-- 277 (525)
Q Consensus 216 ~~~~~-~~~~~~~~A~~~~~~~~~~------~~---------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-- 277 (525)
+..++ .....|.+|...+.+.+.. .+ +.++...|..+.-. +|...|...|.++++++
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~-----g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK-----GDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc-----CCchhhhhhHHHHHhcCcc
Confidence 11111 1234677777777775332 12 55666667766544 59999999999999874
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--Chh
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAG 353 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~ 353 (525)
+...+..+|.+|.+ ..+.++-...|.+|.+.+ +++.++.-|.+++- .+++++|+.-|++++..+ ++.
T Consensus 359 ~~~lyI~~a~~y~d----~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-----L~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 359 FNSLYIKRAAAYAD----ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL-----LQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred cchHHHHHHHHHhh----hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH-----HHHHHHHHHHHHHHhhcChhhhH
Confidence 34458889999999 999999999999998875 89999999999986 459999999999999874 667
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh------H
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW------S 425 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------~ 425 (525)
++..++.+.++ +..++++...|+.+.+. ..++.+...|.++.. ++++++|++.|.+|+++.+. .
T Consensus 430 ~~iQl~~a~Yr----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 430 AYIQLCCALYR----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHHHHHHHHhhcccccccccc
Confidence 78899999888 89999999999999987 778999999999997 99999999999999998753 2
Q ss_pred --HHHHHHHHHH-hcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 426 --SLSRWALESY-LKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 426 --a~~~l~~~~~-~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
.+.+-|.+.. =.+++..|+..+.+|++.+ ...|...+|.+..+ +++.++|+.+|++++.
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ----------------~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQ----------------RGKIDEAIELFEKSAQ 565 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH----------------HhhHHHHHHHHHHHHH
Confidence 2223232222 2379999999999999985 45688889998887 8899999999999986
Q ss_pred CC
Q 009801 501 QG 502 (525)
Q Consensus 501 ~~ 502 (525)
.-
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 43
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=8.1e-17 Score=157.49 Aligned_cols=274 Identities=17% Similarity=0.159 Sum_probs=210.0
Q ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 142 RNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
-+..+|+..|.+.-+ .|-...+..+|..|+...+|++|..+|+.+-+..+-
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--------------------------- 385 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--------------------------- 385 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------------
Confidence 356778888877322 245577888888888888888888888876443221
Q ss_pred hhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHcCCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA---DKGEPQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~---~~~~~~a~~~Lg~~y~~g~~~~ 296 (525)
..+.+--...+.++. .-+-++-++-+-+ +...|.+|..+|.+|.- +
T Consensus 386 ---------------------rv~~meiyST~LWHL------q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL----Q 434 (638)
T KOG1126|consen 386 ---------------------RVKGMEIYSTTLWHL------QDEVALSYLAQDLIDTDPNSPESWCALGNCFSL----Q 434 (638)
T ss_pred ---------------------cccchhHHHHHHHHH------HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh----h
Confidence 112222222333333 2233444444432 23678999999999998 9
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCH
Q 009801 297 RNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDV 372 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~ 372 (525)
++.+.|+++|++|+..+ .+-++..+|.=+.. .+++++|..+|+.|+.. .+-.|||.||.+|.+ ++++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-----~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K----qek~ 505 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-----TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK----QEKL 505 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhh-----hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec----cchh
Confidence 99999999999998775 56777888876654 45899999999999876 477899999999999 9999
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHH
Q 009801 373 KLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYS 448 (525)
Q Consensus 373 ~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~ 448 (525)
+.|.-.|++|++.+ +...+..+|.++.. .|+.++|+.+|++|+.+++ +-..+..|.+++..+++++|+..++
T Consensus 506 e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred hHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999884 56677888999987 8999999999999998885 5567788999999999999999999
Q ss_pred HHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 449 RMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 449 ~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+..+. .+..+++.+|.+|.+ .++.+.|+..|-=|.+++
T Consensus 582 eLk~~vP~es~v~~llgki~k~----------------~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 582 ELKELVPQESSVFALLGKIYKR----------------LGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhCcchHHHHHHHHHHHHH----------------HccchHHHHhhHHHhcCC
Confidence 77654 788899999999988 556788999888888765
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.3e-15 Score=142.63 Aligned_cols=318 Identities=14% Similarity=0.081 Sum_probs=232.0
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh-----ccCCCCCchhhhhccc----c----hhhhhHhhhccCC
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL-----ISKDSPVIEPIRIHNG----A----EENKGALRKSRGE 225 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~ 225 (525)
+.--++..|.++...+...+|+..+..++...|-.+. .+...++.....+..+ . ..-+..++.....
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 5667788899999999999999999988875332210 0000000000000000 0 1123334455556
Q ss_pred cHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHcCCCCCCCHH
Q 009801 226 DDEAFQILEYQAQK---GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP--QSMEFLGEIYARGAGVERNYT 300 (525)
Q Consensus 226 ~~~A~~~~~~~~~~---~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~Lg~~y~~g~~~~~~~~ 300 (525)
.+++++-++..... +.+-.....|.+.... .|+++|+..|+...+.+.- .-+.....++.- . +-.
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~-----rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv----~-~~~ 312 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQ-----RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV----K-NDK 312 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH----H-hhh
Confidence 77777777776665 4455556677777666 5999999999999887321 111112222221 2 233
Q ss_pred HHHHHHHHHH-Hc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 301 KALEWLTHAA-RQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 301 ~A~~~~~~a~-~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
..+.++-+-+ .. -.++.+.-+|+.|.. .++.++|+.+|++|++.+ ...+|..+|.-|.. +++...|
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSl-----r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE----mKNt~AA 383 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSL-----RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE----MKNTHAA 383 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHH-----HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH----hcccHHH
Confidence 3444444432 22 378899999999986 559999999999999874 67899999999999 9999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 376 CKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 376 ~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
+..|++|++. .+-.+|+.||.+|.. .+-..=|+-+|++|.+..| ...+..||..|.+.++.++|+.+|++|+
T Consensus 384 i~sYRrAvdi~p~DyRAWYGLGQaYei----m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 384 IESYRRAVDINPRDYRAWYGLGQAYEI----MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHhcCchhHHHHhhhhHHHHH----hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999998 467899999999997 9999999999999999864 6677899999999999999999999999
Q ss_pred HcChH--HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC-------C--CHHHHHHHHHHHH
Q 009801 452 ELGYE--VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ-------G--NEHAALLIGDAYY 515 (525)
Q Consensus 452 ~~~~~--~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~--~~~a~~~lg~~y~ 515 (525)
..++. .+++.||.+|.+ .++.++|..+|++-++. + ...|...|+.-+.
T Consensus 460 ~~~dte~~~l~~LakLye~----------------l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 460 LLGDTEGSALVRLAKLYEE----------------LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred hccccchHHHHHHHHHHHH----------------HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 99765 899999999999 77899999999998862 1 2456666766554
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=9e-16 Score=150.27 Aligned_cols=280 Identities=17% Similarity=0.135 Sum_probs=223.0
Q ss_pred hHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN--IQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~--~~a~~~la~~y~~~~~~~~A~ 180 (525)
.-+..+|+..|++. -..+..+.+..+|..|++ ..++.+|.+.|+.+-+... .+.+-.+...++..++-- ++
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE----l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v-~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFE----LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV-AL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH-HH
Confidence 55789999999993 245678999999999999 9999999999999865321 111111111222211111 11
Q ss_pred HHHHH-HHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009801 181 KLYAE-LAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL 259 (525)
Q Consensus 181 ~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~ 259 (525)
.++.+ ++ ..++..|+++-.+|.+|.-.
T Consensus 407 s~Laq~Li------------------------------------------------~~~~~sPesWca~GNcfSLQ---- 434 (638)
T KOG1126|consen 407 SYLAQDLI------------------------------------------------DTDPNSPESWCALGNCFSLQ---- 434 (638)
T ss_pred HHHHHHHH------------------------------------------------hhCCCCcHHHHHhcchhhhh----
Confidence 11111 00 13557899999999999766
Q ss_pred ccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccC
Q 009801 260 RRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKN 335 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~ 335 (525)
++.+.|+++|++|+.. +.+.++..+|.=+.. ...+++|..+|+.|+..+ +-.|++.||.+|.. +++
T Consensus 435 -kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~----~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-----qek 504 (638)
T KOG1126|consen 435 -KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA----TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-----QEK 504 (638)
T ss_pred -hHHHHHHHHHHHhhccCCccchhhhhcCChhhh----hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-----cch
Confidence 6999999999999986 467888888887776 789999999999999875 88999999999987 679
Q ss_pred HHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 336 YTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 336 ~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
++.|.-+|++|++.+ +......+|.++.+ .++.++|+.+|++|+.. .++...+..+.++.. .+++++|
T Consensus 505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~----~~~~~ea 576 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS----LGRYVEA 576 (638)
T ss_pred hhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh----hcchHHH
Confidence 999999999999885 56677889999999 99999999999999976 688899999999987 9999999
Q ss_pred HHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHH
Q 009801 412 TALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQ 459 (525)
Q Consensus 412 ~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~ 459 (525)
+.-+++..+.-| ...++.+|.+|.+.|+.+.|+..|-=|.+++...+.
T Consensus 577 l~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 577 LQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999988865 557789999999999999999999988888654444
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.4e-14 Score=137.56 Aligned_cols=206 Identities=17% Similarity=0.142 Sum_probs=175.1
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
..+..|+.+|..|.. .+++++|.++|.++...+ ...++...|..+.. .+..++|+..|.+|.+. |..
T Consensus 310 ~~a~sW~aVg~YYl~----i~k~seARry~SKat~lD~~fgpaWl~fghsfa~-----e~EhdQAmaaY~tAarl~~G~h 380 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLM----IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG-----EGEHDQAMAAYFTAARLMPGCH 380 (611)
T ss_pred CCCcchhhHHHHHHH----hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-----cchHHHHHHHHHHHHHhccCCc
Confidence 346788999999988 899999999999997765 78899999998875 56999999999999987 777
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC---
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----GP--- 423 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~~--- 423 (525)
.....+|.-|.. .++.+.|..+|..|..+ .++..+..+|.+... .+.+.+|+.||+.+++. .+
T Consensus 381 lP~LYlgmey~~----t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 381 LPSLYLGMEYMR----TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred chHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhcccccc
Confidence 788899999999 99999999999999887 789999999999887 89999999999999833 22
Q ss_pred -h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 424 -W-SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 424 -~-~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
+ ..+.+||.++.+.+.+++|+.+|++++.. .++.++..+|++|-. .++++.|+.+|.+|+
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l----------------lgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL----------------LGNLDKAIDHFHKAL 516 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH----------------hcChHHHHHHHHHHH
Confidence 2 23679999999999999999999999987 588999999999988 778999999999998
Q ss_pred hCC--CHHHHHHHHHHHH
Q 009801 500 EQG--NEHAALLIGDAYY 515 (525)
Q Consensus 500 ~~~--~~~a~~~lg~~y~ 515 (525)
-.. +.-+---|+.+-+
T Consensus 517 ~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 517 ALKPDNIFISELLKLAIE 534 (611)
T ss_pred hcCCccHHHHHHHHHHHH
Confidence 765 4333334554443
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.7e-15 Score=141.31 Aligned_cols=343 Identities=17% Similarity=0.099 Sum_probs=204.8
Q ss_pred HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCC
Q 009801 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (525)
Q Consensus 125 ~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~ 200 (525)
..+++|+..|.- ..-..+|+.-|+-.++. +.-.-..++|.+|+++.++.+|+++|+-+++.-|.
T Consensus 202 svl~nlaqqy~~----ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps-------- 269 (840)
T KOG2003|consen 202 SVLFNLAQQYEA----NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS-------- 269 (840)
T ss_pred HHHHHHHHHhhh----hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc--------
Confidence 456789988887 67788999999988764 22234578999999999999999999998764221
Q ss_pred CCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---
Q 009801 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--- 276 (525)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--- 276 (525)
+-...++ .+.++.|....+.|.|+.|+..|....+. -+-.+-++|-.+++..+ |-++-.+.|.+.+..
T Consensus 270 -ink~~ri--kil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~-----d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 270 -INKDMRI--KILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIG-----DAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred -cchhhHH--HHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecC-----cHHHHHHHHHHHhcCCCC
Confidence 1111222 33567777888899999999999887665 35556666666665442 444444444444321
Q ss_pred -------------------------------------------------------CCH------------HHH-------
Q 009801 277 -------------------------------------------------------GEP------------QSM------- 282 (525)
Q Consensus 277 -------------------------------------------------------~~~------------~a~------- 282 (525)
+.+ ..+
T Consensus 342 ~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 342 IDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred CCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh
Confidence 000 000
Q ss_pred -HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCC----------------------------
Q 009801 283 -EFLGEIYARGAGVERNYTKALEWLTHAARQQL---YSAYNGIGYLYVKGYG---------------------------- 330 (525)
Q Consensus 283 -~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~---------------------------- 330 (525)
.+-+.-|.. .+|++.|++.++-.-..++ ..+..+|..+++...|
T Consensus 422 ei~ka~~~lk----~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkg 497 (840)
T KOG2003|consen 422 EINKAGELLK----NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKG 497 (840)
T ss_pred hhhHHHHHHh----ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCC
Confidence 111112333 5677777777765433321 2233444444432100
Q ss_pred ---CCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHcCCC
Q 009801 331 ---VEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA--ANAGHQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 331 ---~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a--~~~~~~~a~~~l~~~y~~g~g 403 (525)
...|++++|...|+.|+..+ ..++++++|..+.. +++.++|+.+|-+. +-.++.+.++.++.+|+.
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~----~~~ldeald~f~klh~il~nn~evl~qianiye~--- 570 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA----LGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL--- 570 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH----hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 11246666666666666553 34566666666666 66666666666553 233666666666666665
Q ss_pred CcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCC
Q 009801 404 LKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGES 479 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~ 479 (525)
..+..+|++|+-++...- ++..+..||.+|-+.|+...|+.++-..-.. -+.....+||..|..
T Consensus 571 -led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid----------- 638 (840)
T KOG2003|consen 571 -LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----------- 638 (840)
T ss_pred -hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh-----------
Confidence 666666666666666553 3555566666666666666666665544433 244445555555433
Q ss_pred CCCCChHhHHHHHHHHHHHHhCC-C-HHHHHHHHHHHH
Q 009801 480 GFCTDAERHQCAHSLWWQASEQG-N-EHAALLIGDAYY 515 (525)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~a~~~~-~-~~a~~~lg~~y~ 515 (525)
..-.++|+.||++|.-.. + ..=...++.|+.
T Consensus 639 -----tqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 639 -----TQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred -----hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 445788999999886544 3 222334455544
No 31
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.71 E-value=5.8e-13 Score=144.97 Aligned_cols=309 Identities=14% Similarity=0.076 Sum_probs=234.7
Q ss_pred cCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhh
Q 009801 141 ERNKGKAFLYHHFAAEGG---NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~---~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (525)
.++.+.|...|++..+.| +...+..|-..|.+.|+.++|.++|+++.+.+.. .+...+..+.
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~---------------PdvvTynaLI 514 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE---------------ANVHTFGALI 514 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC---------------CCHHHHHHHH
Confidence 567777777777776654 5667777777777788888888877776543211 1122345566
Q ss_pred HhhhccCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 009801 218 ALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIY 289 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y 289 (525)
..+.+.|+.++|++.|+.....+ +...+..|...|.+. ++.++|.++|++.... .+...+..|-..|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-----G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS-----GAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 67788889999999888876653 567788888888777 4889999998887652 3456777777788
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHH
Q 009801 290 ARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYY 363 (525)
Q Consensus 290 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 363 (525)
.+ .++.++|++.|++..+.+ +...+..+...|.. .|++++|+..|++..+.+ +..++..+...|.
T Consensus 590 ~k----~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 590 AN----AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HH----CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 87 889999999999888775 56677777777765 568999999999888764 4567778888888
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhc
Q 009801 364 KGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---PWSSLSRWALESYLK 437 (525)
Q Consensus 364 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~~ 437 (525)
. .++.++|...++...+.+ +...+..|..+|.. .++.++|++.|++..+.+ +...+..+...|...
T Consensus 661 k----~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k----~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 661 H----AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred h----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 8 899999999999888764 56778888888887 889999999999887654 355677888889999
Q ss_pred CCHHHHHHHHHHHHHcC---hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 438 GDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 438 g~~~~A~~~~~~a~~~~---~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
|++++|++.+++..+.| +...+..+-..+.+ .+++++|..++.+..+.|
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k----------------~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASER----------------KDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHcC
Confidence 99999999999887764 55556666566655 557889999999888876
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.9e-14 Score=135.70 Aligned_cols=356 Identities=13% Similarity=0.051 Sum_probs=254.6
Q ss_pred ccccCCCCCCCccccCCCCCCCCcccH--HHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCC
Q 009801 63 TEENLDPGSWSPVFEPSIDPGAINGSY--YITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGM 138 (525)
Q Consensus 63 ~~~~~~~~~a~~~~~~~~~~~~~~a~~--~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~ 138 (525)
....++|+.|+++|..+++..+.++.| .++-+|.. .+++++-++...++. +|....+++..+..+..
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~-------lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~-- 195 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYES-------LGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ-- 195 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHH-------HhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh--
Confidence 344467899999999996555444444 45555555 788888888888865 56778888888888877
Q ss_pred CccCCHHHHHHHHHHHH------------------------------cCC---CHHHHHHHHH-----------------
Q 009801 139 MRERNKGKAFLYHHFAA------------------------------EGG---NIQSKMAVAY----------------- 168 (525)
Q Consensus 139 g~~~d~~~A~~~~~~a~------------------------------~~~---~~~a~~~la~----------------- 168 (525)
.++..+|+.-..-.. ..+ ..++-..++.
T Consensus 196 --lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 196 --LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred --hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 677777654332111 000 0000000110
Q ss_pred -------------HHhc-cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHH
Q 009801 169 -------------TYLR-QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE 234 (525)
Q Consensus 169 -------------~y~~-~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 234 (525)
++.. ...|.+|...+.+.......+... ..+-.....-.......|..+.-.|+...|.+.+.
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~---n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSV---NEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccc---cccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 1110 124455555444433222111111 00111111112234456667788899999999999
Q ss_pred HHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 235 YQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 235 ~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
+++.. .++.-+..+|.+|... .+.++-.+.|.+|.+. .++.+++..|++++- .+++++|+.-|++++
T Consensus 351 ~~I~l~~~~~~lyI~~a~~y~d~-----~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl----L~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 351 AAIKLDPAFNSLYIKRAAAYADE-----NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL----LQQYEEAIADFQKAI 421 (606)
T ss_pred HHHhcCcccchHHHHHHHHHhhh-----hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH----HHHHHHHHHHHHHHh
Confidence 98765 4556689999999877 4899999999999876 689999999999998 999999999999999
Q ss_pred HcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 311 RQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 311 ~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
... ++-++..++...++ +..++++...|+.+... ..++.+...|.++.. ++++++|++.|.+++++.
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr-----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYR-----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVKQYDKAIELE 492 (606)
T ss_pred hcChhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHHHHHHHHhhc
Confidence 875 66777888887766 45899999999999987 789999999999999 999999999999999874
Q ss_pred CH--------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 387 HQ--------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 387 ~~--------~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.. --+.+-|.+... ..+|+..|+..+.+|++.+| ..|+..||.+..++|+.++|+++|++++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 32 333333444433 46899999999999999997 678899999999999999999999999865
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=1.1e-13 Score=146.43 Aligned_cols=389 Identities=11% Similarity=-0.043 Sum_probs=214.5
Q ss_pred cccCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHH--HHhhhcCCC
Q 009801 64 EENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVL--GFLYGMGMM 139 (525)
Q Consensus 64 ~~~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l--g~~y~~g~g 139 (525)
...+++..|+..|+++ .+|.++.+.+.+..++.. .++.++|+.+++++.++.+..+...+ |.+|..
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~-------~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~--- 114 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW-------AGRDQEVIDVYERYQSSMNISSRGLASAARAYRN--- 114 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH-------cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH---
Confidence 3345666666666666 333332233344443333 45566666666666555444444444 446665
Q ss_pred ccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhh
Q 009801 140 RERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217 (525)
Q Consensus 140 ~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (525)
.+++++|++.|+++++. +++.++..|+.+|...++.++|++.+++++...+... ....+.
T Consensus 115 -~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-----------------~~l~la 176 (822)
T PRK14574 115 -EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-----------------NYMTLS 176 (822)
T ss_pred -cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-----------------HHHHHH
Confidence 56666666666666543 4566666666666666666666666666654432210 011123
Q ss_pred HhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHH--HHH---HHHHHHH
Q 009801 218 ALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQ--SME---FLGEIYA 290 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~--a~~---~Lg~~y~ 290 (525)
.++...++..+|++.++++++ |++++++..+-.+....+ -...|.+..++--+.-.+. .+. ..+..-.
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~-----~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR-----IVEPALRLAKENPNLVSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHh
Confidence 333334555456666666543 355666666665555552 4445554444321110000 000 0011100
Q ss_pred cC----CCCCCC---HHHHHHHHHHHHHc--CCHHH--H------HHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC---
Q 009801 291 RG----AGVERN---YTKALEWLTHAARQ--QLYSA--Y------NGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--- 350 (525)
Q Consensus 291 ~g----~~~~~~---~~~A~~~~~~a~~~--~~~~a--~------~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--- 350 (525)
.+ .....+ .+.|+.-+++.+.. ..++. . -.|+.+.. .+++.++++.|+..-..+
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~------r~r~~~vi~~y~~l~~~~~~~ 325 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV------RHQTADLIKEYEAMEAEGYKM 325 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhhhcCCCC
Confidence 00 000011 22233333333321 11211 1 11222221 347888888888776554
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
.+.+...+|+.|.. .+++++|...|+.++... .......|-..|.. .+++++|..+.++..+..
T Consensus 326 P~y~~~a~adayl~----~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld----~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 326 PDYARRWAASAYID----RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE----SEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred CHHHHHHHHHHHHh----cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh----cccHHHHHHHHHHHHhcC
Confidence 34566778888888 888888888888876532 12223455566665 788888888888887632
Q ss_pred C-----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCC
Q 009801 423 P-----------------WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCT 483 (525)
Q Consensus 423 ~-----------------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~ 483 (525)
| .++...++..+...|++.+|.+.+++.+.. +++.....+|.++..
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~--------------- 462 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLA--------------- 462 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---------------
Confidence 2 235566777788888888888888888765 678888888888876
Q ss_pred ChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 484 DAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 484 ~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.+.+.+|..+++.+...+ +..+.+.+|.++.
T Consensus 463 -Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 463 -RDLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred -cCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 667788888887655443 5566666666654
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=2.3e-14 Score=151.68 Aligned_cols=345 Identities=13% Similarity=0.025 Sum_probs=235.9
Q ss_pred ccCCCCCCCccccCCCCCCCCcccHHH--HHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCc
Q 009801 65 ENLDPGSWSPVFEPSIDPGAINGSYYI--TISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMR 140 (525)
Q Consensus 65 ~~~~~~~a~~~~~~~~~~~~~~a~~~l--~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~ 140 (525)
..++..+|+.+++++.++.+....-.+ |..+.. .+++++|+..|+++. +|+++.++..|+.+|..
T Consensus 80 ~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-------~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~---- 148 (822)
T PRK14574 80 WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-------EKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD---- 148 (822)
T ss_pred HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh----
Confidence 347788999999999988777777777 556665 788999999999964 78899999999999998
Q ss_pred cCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 141 ERNKGKAFLYHHFAAEGG-NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~-~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
.++.++|++.++++.... .......++.++...++..+|++.|+++++..|.+... ......+
T Consensus 149 ~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~----------------~~~~~~~ 212 (822)
T PRK14574 149 AGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEV----------------LKNHLEI 212 (822)
T ss_pred cCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHH----------------HHHHHHH
Confidence 899999999999998753 22223555666666778877999999999987654322 3345555
Q ss_pred hhccCCcHHHHHHHHHHHH------------------------cC--CH----H---HHHHHHHHHHhcC----------
Q 009801 220 RKSRGEDDEAFQILEYQAQ------------------------KG--NA----G---AMYKIGLFYYFGL---------- 256 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~------------------------~~--~~----~---a~~~Lg~~y~~~~---------- 256 (525)
....|-...|++..++.-+ +. .. . ++-.+-.++-...
T Consensus 213 l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~ 292 (822)
T PRK14574 213 LQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQ 292 (822)
T ss_pred HHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHH
Confidence 6667777777766654100 00 00 0 0000000110000
Q ss_pred ---------CCCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--------CHH
Q 009801 257 ---------RGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--------LYS 316 (525)
Q Consensus 257 ---------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~ 316 (525)
-...+++.+++..|+..-..+ .+.+....|..|.. .+.+++|+..|++++... ...
T Consensus 293 ~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~----~~~P~kA~~l~~~~~~~~~~~~~~~~~~~ 368 (822)
T PRK14574 293 RARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID----RRLPEKAAPILSSLYYSDGKTFRNSDDLL 368 (822)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHhhccccccCCCcchH
Confidence 001235666677776665444 34577778888887 888888888888876643 112
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----------------CChhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----------------EEAGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-----------------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
....|-..|.. .+++++|..++++..+. +..++...++.++.- .++..+|.+.+
T Consensus 369 ~~~~L~yA~ld-----~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~----~gdl~~Ae~~l 439 (822)
T PRK14574 369 DADDLYYSLNE-----SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA----LNDLPTAQKKL 439 (822)
T ss_pred HHHHHHHHHHh-----cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 23444444443 56888888888887652 112355667777777 78888888888
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 380 LVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 380 ~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++.+.. ++...+..+|.++.. .+.+.+|..+++.+...+| ..+....+.++..++++++|....+..++.
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~----Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLA----RDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 887765 788888888888887 8888888888877776654 456667788888888888888888777665
No 35
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.69 E-value=3.4e-12 Score=139.05 Aligned_cols=340 Identities=12% Similarity=0.035 Sum_probs=275.3
Q ss_pred hHhHHHHHHHHHHHHhcCCh--H--HHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDP--H--ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~--~--a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+++++|+..|+...+.+.. . .+..+-..+.. .+....|..+++.... -+...+..+-..+...+++++|.
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~----~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK----QRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----CCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHH
Confidence 57799999999997666531 1 12223334444 6789999999987766 56778888889999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCC
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLR 257 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~a~~~Lg~~y~~~~~ 257 (525)
..++++.+.+.. ........+...+...|+.++|.+++++..+.+ +...+..|...|.+.+
T Consensus 458 ~lf~~M~~~Gl~---------------pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G- 521 (1060)
T PLN03218 458 RVLRLVQEAGLK---------------ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG- 521 (1060)
T ss_pred HHHHHHHHcCCC---------------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-
Confidence 999998764321 111234566777889999999999999988753 6788889999998884
Q ss_pred CCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCC
Q 009801 258 GLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-----QLYSAYNGIGYLYVKGY 329 (525)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~ 329 (525)
++++|+..|++..+.+ +...+..|-..|.. .++.++|.+.|++.... .+...+..|-..|..
T Consensus 522 ----~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k----~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k-- 591 (1060)
T PLN03218 522 ----QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ----SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN-- 591 (1060)
T ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH--
Confidence 9999999999988764 56788888888888 89999999999998752 356677777777766
Q ss_pred CCCccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCC
Q 009801 330 GVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 330 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g 403 (525)
.|++++|.+.|++..+.+ ++..+..+...|.+ .++.++|...|++..+.| +...+..+-..|..
T Consensus 592 ---~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k--- 661 (1060)
T PLN03218 592 ---AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH--- 661 (1060)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Confidence 569999999999999875 56788899999999 999999999999988774 55677777777876
Q ss_pred CcCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---hHHHHHHHHHHHhhhCCCccccC
Q 009801 404 LKKNLHMATALYKLVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMCMG 477 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~a~~~la~~~~~~~~~~~~~~ 477 (525)
.+++++|.+.++...+.+ +...+..+...|.+.|+.++|+..|++..+.+ +...++.+-..|.+
T Consensus 662 -~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k--------- 731 (1060)
T PLN03218 662 -AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE--------- 731 (1060)
T ss_pred -CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---------
Confidence 899999999999999886 35677889999999999999999999987653 66677778877777
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 478 ESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 478 ~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.+++++|++.|++..+.|
T Consensus 732 -------~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 732 -------GNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred -------CCCHHHHHHHHHHHHHcC
Confidence 668899999999877665
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=8.8e-16 Score=145.85 Aligned_cols=224 Identities=18% Similarity=0.095 Sum_probs=104.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-C
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-L 314 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~ 314 (525)
.++++..+..+|.+.... ++++.|+..|++.+.. .++..+..++.+ .. .+++++|+.+++++.+.. +
T Consensus 40 ~~~~~~~~~~~a~La~~~-----~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~----~~~~~~A~~~~~~~~~~~~~ 109 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSL-----GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ----DGDPEEALKLAEKAYERDGD 109 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-----cccccccccccccccccccccccccccccc-cc----cccccccccccccccccccc
Confidence 356777888888888766 4999999999998876 345666777777 34 789999999998887654 4
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
+..+..+..++.. .++++++...++++... .++..+..+|.++.. .++.++|+..|+++++. +++
T Consensus 110 ~~~l~~~l~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 110 PRYLLSALQLYYR-----LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp --------H-HHH-----TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHHHHHHHHHHHHHHH-TT-H
T ss_pred cchhhHHHHHHHH-----HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCH
Confidence 5555555566655 45899999998887643 466788899999999 99999999999999987 578
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
.+...++.++.. .++.+++.+.++...... ++..+..+|.++...|++++|+.+|+++.+. +++..+.++|.
T Consensus 181 ~~~~~l~~~li~----~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 181 DARNALAWLLID----MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD 256 (280)
T ss_dssp HHHHHHHHHHCT----TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 888889988876 788888777777766553 4556778899999999999999999999885 68889999999
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
++.. .++.++|..+++++.+
T Consensus 257 ~l~~----------------~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 257 ALEQ----------------AGRKDEALRLRRQALR 276 (280)
T ss_dssp HHT---------------------------------
T ss_pred cccc----------------cccccccccccccccc
Confidence 9988 6788999999888765
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=7.8e-16 Score=146.20 Aligned_cols=248 Identities=18% Similarity=0.132 Sum_probs=55.3
Q ss_pred HHHHHhhhcCCCccCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCc
Q 009801 128 SVLGFLYGMGMMRERNKGKAFLYHHFAAE----GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVI 203 (525)
Q Consensus 128 ~~lg~~y~~g~g~~~d~~~A~~~~~~a~~----~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~ 203 (525)
+.+|.++.. .+++++|++.+++.+. .+++..+..+|.+....+++++|+..|++++..++.+..
T Consensus 12 l~~A~~~~~----~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~-------- 79 (280)
T PF13429_consen 12 LRLARLLYQ----RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ-------- 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------
Confidence 355666665 6677777777754432 245566666777777777777777777776554322110
Q ss_pred hhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CC
Q 009801 204 EPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE 278 (525)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~ 278 (525)
....+..+ ...+++++|++.+++..+. +++..+..+..++... ++++++...++++... .+
T Consensus 80 --------~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 80 --------DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRL-----GDYDEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp -----------------------------------------------H-HHHT-----T-HHHHHHHHHHHHH-T---T-
T ss_pred --------cccccccc-cccccccccccccccccccccccchhhHHHHHHHHH-----hHHHHHHHHHHHHHhccCCCCC
Confidence 01111111 2233333333333332221 2333333344444333 2455555554443321 23
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG 354 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a 354 (525)
+..+..+|.++.. .|+.++|+..|+++++.. ++.+...++.++.. .++++++...++..... .++..
T Consensus 146 ~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-----~~~~~~~~~~l~~~~~~~~~~~~~ 216 (280)
T PF13429_consen 146 ARFWLALAEIYEQ----LGDPDKALRDYRKALELDPDDPDARNALAWLLID-----MGDYDEAREALKRLLKAAPDDPDL 216 (280)
T ss_dssp HHHHHHHHHHHHH----CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHH-HTSCCH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHHHCcCHHHH
Confidence 3444445555554 455555555555554432 34444444444432 23444433333333222 23444
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a 418 (525)
+..+|.+|.. .+++++|+.+|+++... +++..+..+|.++.. .|+.++|...++++
T Consensus 217 ~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~----~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 217 WDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ----AGRKDEALRLRRQA 274 (280)
T ss_dssp CHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred HHHHHHHhcc----cccccccccccccccccccccccccccccccccc----cccccccccccccc
Confidence 4444444444 44444444444444442 344444444444444 44444444444444
No 38
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.66 E-value=2.4e-13 Score=145.78 Aligned_cols=398 Identities=11% Similarity=-0.031 Sum_probs=292.2
Q ss_pred cCCCCCCCccccCCCCCC----CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhc---CChHHHHHHHHhhhcCC
Q 009801 66 NLDPGSWSPVFEPSIDPG----AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME---GDPHARSVLGFLYGMGM 138 (525)
Q Consensus 66 ~~~~~~a~~~~~~~~~~~----~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~g~ 138 (525)
.+++..|..+|+.....+ +..++..+...+.. .++.+.|...+...... .+...+..|..+|..
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~-------~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k-- 170 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIA-------LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK-- 170 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc--
Confidence 345667777776663322 22333333333332 56788888888876543 356777788888888
Q ss_pred CccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCC---------CCCc------
Q 009801 139 MRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD---------SPVI------ 203 (525)
Q Consensus 139 g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~---------~~~~------ 203 (525)
.++.++|.+.|++..+. +..++..+...|.+.|++++|+..|++..+.+......... ....
T Consensus 171 --~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 171 --CGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred --CCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 89999999999988654 56788899999999999999999999987653221000000 0000
Q ss_pred ---h--hhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-
Q 009801 204 ---E--PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG- 277 (525)
Q Consensus 204 ---~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~- 277 (525)
. .........+.+...|.+.|+.++|.+.|+... ..+..++..+...|.+.+ +.++|+..|++..+.+
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~g-----~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHG-----YSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCC
Confidence 0 001122334566778899999999999998764 357788999999998884 9999999999987754
Q ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCCh
Q 009801 278 --EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA 352 (525)
Q Consensus 278 --~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~ 352 (525)
+...+..+...+.. .++.++|.+.+....+.+ +...+..|..+|.. .|+.++|.+.|++..+ .+.
T Consensus 322 ~pd~~t~~~ll~a~~~----~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k-----~G~~~~A~~vf~~m~~-~d~ 391 (697)
T PLN03081 322 SIDQFTFSIMIRIFSR----LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK-----WGRMEDARNVFDRMPR-KNL 391 (697)
T ss_pred CCCHHHHHHHHHHHHh----ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH-----CCCHHHHHHHHHhCCC-CCe
Confidence 56677888888888 899999999999998876 56677888888876 5699999999998765 467
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-C--C-hH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER-G--P-WS 425 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-~--~-~~ 425 (525)
.+|..+...|.. .++.++|+..|++..+.| +...+..+-..+.. .++.++|.++|+...+. + | ..
T Consensus 392 ~t~n~lI~~y~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 392 ISWNALIAGYGN----HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY----SGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred eeHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 789999999999 999999999999988764 44555555555665 88999999999999864 3 2 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--C
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--N 503 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~ 503 (525)
.+..+...+.+.|+.++|.+.+++.--..+...+..+...+.. .++.+.|...+++..+.+ +
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~----------------~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI----------------HKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------------cCCcHHHHHHHHHHhCCCCCC
Confidence 6778888999999999999998876444456667777666666 556778888888776654 3
Q ss_pred HHHHHHHHHHHH
Q 009801 504 EHAALLIGDAYY 515 (525)
Q Consensus 504 ~~a~~~lg~~y~ 515 (525)
...+..|.++|-
T Consensus 528 ~~~y~~L~~~y~ 539 (697)
T PLN03081 528 LNNYVVLLNLYN 539 (697)
T ss_pred CcchHHHHHHHH
Confidence 456666666664
No 39
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.65 E-value=2.1e-13 Score=146.28 Aligned_cols=335 Identities=12% Similarity=0.016 Sum_probs=256.1
Q ss_pred hHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--------------------------
Q 009801 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-------------------------- 158 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-------------------------- 158 (525)
.+++++|.+.|++..++ +..++..+-..|.. .++.++|+..|++..+.|
T Consensus 171 ~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~----~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 171 CGMLIDARRLFDEMPER-NLASWGTIIGGLVD----AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred CCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHH----CcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 45566666666654332 44455555555555 566666666666654322
Q ss_pred ------------CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCc
Q 009801 159 ------------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226 (525)
Q Consensus 159 ------------~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (525)
+...+..|...|.+.|++++|.+.|++..+. +...++.+...+...|+.
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-------------------~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-------------------TTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-------------------ChhHHHHHHHHHHhCCCH
Confidence 3445567778888899999999988765221 223466778889999999
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHH
Q 009801 227 DEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYT 300 (525)
Q Consensus 227 ~~A~~~~~~~~~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~ 300 (525)
++|+++|++....+ +...+..+...+.+. +++++|.+.+....+.+ +..++..|..+|.+ .|+.+
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k----~G~~~ 377 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL-----ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK----WGRME 377 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH----CCCHH
Confidence 99999999987654 667888888888777 49999999999999875 45678889999999 99999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 301 KALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACK 377 (525)
Q Consensus 301 ~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~~~~~A~~ 377 (525)
+|...|++..+ .+..+++.|...|.. .|+.++|++.|++..+.+ +..++..+-..+.. .++.++|..
T Consensus 378 ~A~~vf~~m~~-~d~~t~n~lI~~y~~-----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~~~~a~~ 447 (697)
T PLN03081 378 DARNVFDRMPR-KNLISWNALIAGYGN-----HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY----SGLSEQGWE 447 (697)
T ss_pred HHHHHHHhCCC-CCeeeHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc----CCcHHHHHH
Confidence 99999998654 466778888888876 569999999999988775 55567777778888 899999999
Q ss_pred HHHHHHHc-C---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 378 YFLVAANA-G---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 378 ~~~~a~~~-~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+|+...+. + +...+..+..+|.. .|++++|.+.+++.-...+...+..+...+...|+.+.|...+++..+.
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGR----EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHh----cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 99998764 2 34567777778876 8999999999987543335667778888899999999999999998876
Q ss_pred C--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 454 G--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 454 ~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+ +...+..+..+|.. .+++++|.+.+++..+.|
T Consensus 524 ~p~~~~~y~~L~~~y~~----------------~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNS----------------SGRQAEAAKVVETLKRKG 558 (697)
T ss_pred CCCCCcchHHHHHHHHh----------------CCCHHHHHHHHHHHHHcC
Confidence 4 45577788888877 668999999998766554
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=4.7e-13 Score=135.41 Aligned_cols=305 Identities=15% Similarity=0.138 Sum_probs=238.4
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.|++++|.+.+...+ +|.++.+++.||.+|.+ .||.+++...+-.|++. ++.+-+..++.+..++++++.|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq----rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ----RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 789999999999976 56789999999999999 99999999999999875 58899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCH-------HHHHHHHHHHH
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA-------GAMYKIGLFYY 253 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~a~~~Lg~~y~ 253 (525)
-+|.++++..|.++.. ......++.+.|+...|..-+++......+ +.....+..+.
T Consensus 228 ~cy~rAI~~~p~n~~~----------------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWEL----------------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcCCcchHH----------------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999987766432 456788899999999999999998776431 12222344444
Q ss_pred hcCCCCccCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----------------
Q 009801 254 FGLRGLRRDRTKALMWFSKAADKG----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----------------- 312 (525)
Q Consensus 254 ~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------------- 312 (525)
.. ++-+.|++.++.++... .-.-+..++.++.. ...+++|......-...
T Consensus 292 ~~-----~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~----~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 292 TH-----NERERAAKALEGALSKEKDEASLEDLNILAELFLK----NKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred Hh-----hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH----hHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 44 36699999999998742 22345567777777 67788887776665540
Q ss_pred --------C-----CHHH-HHHHHHHHHhCCCCCccCHHHHHHHHHHHHh---CCChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 313 --------Q-----LYSA-YNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD---NEEAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 313 --------~-----~~~a-~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
+ +..+ ...++.+... ..+..+++..+..--. ..+++.++.++..|.+ .+.+.+|
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~-----~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~----~~~~~~A 433 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLK-----ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN----IGKYKEA 433 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhccc-----ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh----cccHHHH
Confidence 1 1122 3344444433 2355555554433222 2467889999999999 9999999
Q ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 376 CKYFLVAANA---GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 376 ~~~~~~a~~~---~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
+.+|...... ++.-.++.+|.+|.. .+.++.|+++|++++...| .++-..|+.++..+|+.++|.+.+++.
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~----l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYME----LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 9999998866 566789999999998 9999999999999999864 789999999999999999999999874
Q ss_pred H
Q 009801 451 A 451 (525)
Q Consensus 451 ~ 451 (525)
.
T Consensus 510 ~ 510 (895)
T KOG2076|consen 510 I 510 (895)
T ss_pred c
Confidence 3
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=1.2e-13 Score=143.30 Aligned_cols=256 Identities=13% Similarity=-0.021 Sum_probs=185.3
Q ss_pred HHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHHHhhhh
Q 009801 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLR---------QDMHDKAVKLYAELAEIAVNSFL 195 (525)
Q Consensus 127 ~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~---------~~~~~~A~~~y~~~~~~~~~~~~ 195 (525)
.+..|..+... ....+.++|+.+|++|++. ++..++..+|.+|.. .+++++|+..++++++
T Consensus 261 ~~lrg~~~~~~-~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~------- 332 (553)
T PRK12370 261 VYLRGKHELNQ-YTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE------- 332 (553)
T ss_pred HHHHhHHHHHc-cCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh-------
Confidence 45555533321 1256778888888888764 577888888877653 3458889998888865
Q ss_pred ccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh
Q 009801 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (525)
.+|+++.++..+|.++... +++++|+.+|+++++
T Consensus 333 -----------------------------------------ldP~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 333 -----------------------------------------LDHNNPQALGLLGLINTIH-----SEYIVGSLLFKQANL 366 (553)
T ss_pred -----------------------------------------cCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHH
Confidence 4567788888889888776 489999999999877
Q ss_pred c--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--
Q 009801 276 K--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-- 349 (525)
Q Consensus 276 ~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-- 349 (525)
. +++.+++.+|.++.. .|++++|+.+++++++.+ ++.+...++.++.. .+++++|+.+++++++.
T Consensus 367 l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-----~g~~eeA~~~~~~~l~~~~ 437 (553)
T PRK12370 367 LSPISADIKYYYGWNLFM----AGQLEEALQTINECLKLDPTRAAAGITKLWITYY-----HTGIDDAIRLGDELRSQHL 437 (553)
T ss_pred hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-----ccCHHHHHHHHHHHHHhcc
Confidence 5 567888899999888 889999999999998875 44455555544443 35889999999988754
Q ss_pred -CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--h
Q 009801 350 -EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--W 424 (525)
Q Consensus 350 -~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~ 424 (525)
+++.++..+|.+|.. .+++++|...+++.... .+..+...++..|.. .+ ++|...+++..+... +
T Consensus 438 p~~~~~~~~la~~l~~----~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 438 QDNPILLSMQVMFLSL----KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ----NS--ERALPTIREFLESEQRID 507 (553)
T ss_pred ccCHHHHHHHHHHHHh----CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc----cH--HHHHHHHHHHHHHhhHhh
Confidence 467778889999988 89999999999886554 345566677777664 33 466666666544321 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcChH
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAELGYE 456 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 456 (525)
........++...|+-+.+..| +++.+.++.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 1122377778888999999988 777777653
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=9.5e-14 Score=144.04 Aligned_cols=217 Identities=13% Similarity=0.052 Sum_probs=168.9
Q ss_pred cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009801 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFY 252 (525)
Q Consensus 173 ~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y 252 (525)
.+++++|+..|+++++.+|..... +. .-..++..++..-
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a----------------~~-------------------------~La~~~~~~~~~g 312 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAP----------------YC-------------------------ALAECYLSMAQMG 312 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHH----------------HH-------------------------HHHHHHHHHHHcC
Confidence 356789999999999998875311 00 0122233333321
Q ss_pred HhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhC
Q 009801 253 YFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKG 328 (525)
Q Consensus 253 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g 328 (525)
. ....+++.+|+..++++++. +++.++..+|.++.. .+++++|+..|+++++.+ ++.+++.+|.++..
T Consensus 313 ~---~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~- 384 (553)
T PRK12370 313 I---FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI----HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM- 384 (553)
T ss_pred C---cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 1 12235799999999999976 688999999999998 999999999999998875 78899999999987
Q ss_pred CCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCC
Q 009801 329 YGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA---GHQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 329 ~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~l~~~y~~g~g 403 (525)
.|++++|+.+++++++.+ ++.+.+.++.++.. .+++++|+.+++++++. +++.++.++|.++..
T Consensus 385 ----~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~--- 453 (553)
T PRK12370 385 ----AGQLEEALQTINECLKLDPTRAAAGITKLWITYY----HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL--- 453 (553)
T ss_pred ----CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh---
Confidence 579999999999999874 44566667777777 78999999999998864 467889999999987
Q ss_pred CcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 404 LKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.|++++|...+++.....+ ..+...++..+...|+ +|...+++..+
T Consensus 454 -~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 454 -KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred -CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 9999999999999876654 4566677777888884 77777776554
No 43
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.63 E-value=2.4e-14 Score=117.67 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=160.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHcCCH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGA-GVERNYTKALEWLTHAARQQLY 315 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~-~~~~~~~~A~~~~~~a~~~~~~ 315 (525)
+...|+++..||... +++.+|+++|.+.|++-.+. +++.+++.+|..+..|. |..++...|+++|+.+++.+.+
T Consensus 30 ~EK~Pe~C~lLgdYl----Egi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~ 105 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYL----EGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIP 105 (248)
T ss_pred ccCCchHHHHHHHHH----HHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCH
Confidence 346799999999988 47789999999999998765 78999999999999985 4788999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcc--CHHHHHHHHHHHHhCCChhHHHHHHHHHHcCC----------C----------CcCCHH
Q 009801 316 SAYNGIGYLYVKGYGVEKK--NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGI----------G----------VKRDVK 373 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~--~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~----------~----------~~~~~~ 373 (525)
.++.++|.+...|.-.... |..+|+.++.++++.++..+++.|.-+|..|. + +.+|.+
T Consensus 106 ~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMd 185 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMD 185 (248)
T ss_pred HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHH
Confidence 9999999999877532222 58899999999999999999999999999871 1 237899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 374 LACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 374 ~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
+|.++-.+|.+++++.+..++..+|..|.|+.+|.++|..+-.+|.++
T Consensus 186 ka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 186 KALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998765
No 44
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=130.30 Aligned_cols=233 Identities=15% Similarity=0.122 Sum_probs=199.2
Q ss_pred hhhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009801 214 ENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYA 290 (525)
Q Consensus 214 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 290 (525)
...+..|.+.|-+.+|.+.++.+..+ ..++.+..|..+|.+. ..+..|+..+.+.++. .+..-+..++.++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri-----dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI-----DQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh-----ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 46788899999999999999999887 7899999999999888 4899999999999986 56666777888999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCC
Q 009801 291 RGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGI 366 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~ 366 (525)
. .++.++|.++|+.+++.. +.++..-+|.-|+. .++++-|+.+|++.+++| +++.+.++|.+..-
T Consensus 302 a----m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-- 370 (478)
T KOG1129|consen 302 A----MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-- 370 (478)
T ss_pred H----HHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh--
Confidence 8 999999999999999875 66666666666665 359999999999999985 88999999999998
Q ss_pred CCcCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCC
Q 009801 367 GVKRDVKLACKYFLVAANA-----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGD 439 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~-----~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~ 439 (525)
-++++-++..|++|+.. .-++.|++||.+... .||+.-|..+|+.++..+ +.+++.+||.+-.+.|+
T Consensus 371 --aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~----iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 371 --AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT----IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred --hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe----ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 89999999999999865 246789999998876 899999999999999876 58899999999999999
Q ss_pred HHHHHHHHHHHHHcC--hHHHHHHHHHHHhh
Q 009801 440 VGKAFLLYSRMAELG--YEVAQSNAAWILDK 468 (525)
Q Consensus 440 ~~~A~~~~~~a~~~~--~~~a~~~la~~~~~ 468 (525)
.++|..++..|.... -.+..+|++.+-++
T Consensus 445 i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred hHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 999999999887652 34455666654443
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.6e-12 Score=125.28 Aligned_cols=339 Identities=16% Similarity=0.097 Sum_probs=249.3
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhh----------cCCC----ccCCHHH
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYG----------MGMM----RERNKGK 146 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~----------~g~g----~~~d~~~ 146 (525)
..+...|..|..|.. ..+.++|..+|.+|. +..+.++.-.|=.... .+.. ...+.+.
T Consensus 139 ~essic~lRgk~y~a-------l~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~ 211 (611)
T KOG1173|consen 139 LESSICYLRGKVYVA-------LDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVER 211 (611)
T ss_pred chhceeeeeeehhhh-------hccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHH
Confidence 346667777887765 778999999999974 4455555433222111 1100 0112222
Q ss_pred HHHHHHHH----Hc---------------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhh
Q 009801 147 AFLYHHFA----AE---------------GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIR 207 (525)
Q Consensus 147 A~~~~~~a----~~---------------~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 207 (525)
=...|+.- .+ ..+.......+..+....++.+-.++...+.+.+|.....
T Consensus 212 l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~----------- 280 (611)
T KOG1173|consen 212 LEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC----------- 280 (611)
T ss_pred HHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch-----------
Confidence 23333311 00 1356777788888899999999999999988876543211
Q ss_pred hcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHH
Q 009801 208 IHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSME 283 (525)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 283 (525)
....++ .+...|+..+-+-+--+.++ |..+-.++.+|..|... +++.+|.++|-|+... ....+|.
T Consensus 281 ----~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i-----~k~seARry~SKat~lD~~fgpaWl 350 (611)
T KOG1173|consen 281 ----LPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI-----GKYSEARRYFSKATTLDPTFGPAWL 350 (611)
T ss_pred ----HHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh-----cCcHHHHHHHHHHhhcCccccHHHH
Confidence 111223 23344454444444444444 57889999999999877 4999999999999876 4578999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHH
Q 009801 284 FLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG 359 (525)
Q Consensus 284 ~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 359 (525)
..|..|.. ++..++|+..|..|.+. |.......+|.-|.. .++.+-|.++|.+|... .+|-....+|
T Consensus 351 ~fghsfa~----e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-----t~n~kLAe~Ff~~A~ai~P~Dplv~~Elg 421 (611)
T KOG1173|consen 351 AFGHSFAG----EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-----TNNLKLAEKFFKQALAIAPSDPLVLHELG 421 (611)
T ss_pred HHhHHhhh----cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-----hccHHHHHHHHHHHHhcCCCcchhhhhhh
Confidence 99999998 99999999999999875 555566777877765 45999999999999876 7899999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHH
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANA----G-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLS 428 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~----~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~ 428 (525)
.+... .+.+.+|..||+.++.. + ....+.+||.++.. .+.+++|+.+|++++... ++..+.
T Consensus 422 vvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk----l~~~~eAI~~~q~aL~l~~k~~~~~a 493 (611)
T KOG1173|consen 422 VVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK----LNKYEEAIDYYQKALLLSPKDASTHA 493 (611)
T ss_pred heeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH----HhhHHHHHHHHHHHHHcCCCchhHHH
Confidence 99999 99999999999999832 1 34458999999998 999999999999999987 477888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
.+|.++..+|+++.|+..|.+|+.. ++..+---|+.+.
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999876 4444444455554
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=8.8e-12 Score=124.03 Aligned_cols=210 Identities=8% Similarity=0.010 Sum_probs=144.1
Q ss_pred hhccCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC--HH--------HHHHHHH
Q 009801 220 RKSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE--PQ--------SMEFLGE 287 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~--~~--------a~~~Lg~ 287 (525)
+...|++++|+..+++. ..|+++.+...++.+|... +++++|+..+.+..+... +. ++..+..
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~-----gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT-----GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33334444444444433 3457888899999999877 499999988888876532 22 1111111
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHc
Q 009801 288 IYARGAGVERNYTKALEWLTHAA--RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYK 364 (525)
Q Consensus 288 ~y~~g~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~ 364 (525)
.... ..+.+...++++... ...++.+...++..+.. .|+.++|.+.++++++.. ++......+.+ .
T Consensus 238 ~~~~----~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~ 306 (398)
T PRK10747 238 QAMA----DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-----CDDHDTAQQIILDGLKRQYDERLVLLIPRL--K 306 (398)
T ss_pred HHHH----hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--c
Confidence 1111 223344444444332 23578888888888876 569999999999998853 33222222222 3
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhcCCHH
Q 009801 365 GIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS-SLSRWALESYLKGDVG 441 (525)
Q Consensus 365 g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-a~~~l~~~~~~~g~~~ 441 (525)
.++.++++...++.++. +++.....+|.++.. .+++++|.++|+++++..|.. .+..++.++...|+.+
T Consensus 307 ----~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~----~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 307 ----TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK----HGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred ----CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 57888899988888766 678888899999987 899999999999999998654 4578999999999999
Q ss_pred HHHHHHHHHHHc
Q 009801 442 KAFLLYSRMAEL 453 (525)
Q Consensus 442 ~A~~~~~~a~~~ 453 (525)
+|..+|++++..
T Consensus 379 ~A~~~~~~~l~~ 390 (398)
T PRK10747 379 EAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=4.5e-12 Score=126.75 Aligned_cols=276 Identities=13% Similarity=-0.001 Sum_probs=188.2
Q ss_pred cCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhH
Q 009801 141 ERNKGKAFLYHHFAAEGG--NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~--~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (525)
.||++.|.+...++.+.. ...++...|.+....|++++|.++++++.+..+.... ......+.
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l---------------~~~~~~a~ 161 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI---------------LVEIARTR 161 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch---------------HHHHHHHH
Confidence 667777777777766542 3344555566666777777777777776543222100 00112355
Q ss_pred hhhccCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC--CHHHHH----HHHHHHH
Q 009801 219 LRKSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQSME----FLGEIYA 290 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~----~Lg~~y~ 290 (525)
++...+++++|...++... .|+++.++..++.++... +|++.|.+.+.+..+.+ ++.... ....-..
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~-----~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS-----GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 5666677777777776654 458899999999999888 49999999999988763 222221 1111112
Q ss_pred cCCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhH----HHHHHH
Q 009801 291 RGAGVERNYTKALEWLTHAARQ------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG----HYNLGV 360 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a----~~~lg~ 360 (525)
. .+..+++...+.++.+. .++.....++..+.. .|++++|++.++++++...... ......
T Consensus 237 ~----~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~-----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~ 307 (409)
T TIGR00540 237 D----EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID-----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPI 307 (409)
T ss_pred H----HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHhhCCCcccchhHHHHHh
Confidence 2 22333344455555432 377888889888876 5699999999999998632222 122333
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHc--CCH--HHHHHHHHHHHcCCCCcCCHHHHHHHHH--HHHHcCC-hHHHHHHHHH
Q 009801 361 MYYKGIGVKRDVKLACKYFLVAANA--GHQ--KAFYQLAKMFHTGVGLKKNLHMATALYK--LVAERGP-WSSLSRWALE 433 (525)
Q Consensus 361 ~y~~g~~~~~~~~~A~~~~~~a~~~--~~~--~a~~~l~~~y~~g~g~~~~~~~A~~~~~--~a~~~~~-~~a~~~l~~~ 433 (525)
.... .++..++...++++.+. +++ .....+|.++.. .+++++|.++|+ ++.+..| +..+..+|.+
T Consensus 308 ~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~----~~~~~~A~~~le~a~a~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 308 PRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK----HGEFIEAADAFKNVAACKEQLDANDLAMAADA 379 (409)
T ss_pred hhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----cccHHHHHHHHHHhHHhhcCCCHHHHHHHHHH
Confidence 3344 57788899999998877 677 777899999987 999999999999 4666654 4556799999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 009801 434 SYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~ 453 (525)
+...|+.++|..+|++++..
T Consensus 380 l~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.59 E-value=7.2e-13 Score=126.22 Aligned_cols=207 Identities=16% Similarity=0.101 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCc
Q 009801 262 DRTKALMWFSKAADK------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~ 333 (525)
..+.++.-+.+++.. ..+..++.+|.+|.. .|++++|+..|+++++.. ++.+++.+|.++.. .
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-----~ 111 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-----A 111 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----C
Confidence 456677778777752 336779999999998 999999999999998864 78999999999987 6
Q ss_pred cCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHcCCCCcCCHHH
Q 009801 334 KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK-MFHTGVGLKKNLHM 410 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~-~y~~g~g~~~~~~~ 410 (525)
+++++|+..|+++++. +++.++.++|.++.. .+++++|+..++++++.........+.. +... .+++++
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~ 183 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQ 183 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHH
Confidence 7999999999999876 578899999999999 9999999999999998743222222222 2233 678999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHH--HHHHHHHH----Hc--ChHHHHHHHHHHHhhhCCCccccCCCCCC
Q 009801 411 ATALYKLVAERGPWSSLSRWALESYLKGDVGKA--FLLYSRMA----EL--GYEVAQSNAAWILDKYGEGSMCMGESGFC 482 (525)
Q Consensus 411 A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A--~~~~~~a~----~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~ 482 (525)
|+..+++++...++..+. .+.+....|+..++ +..+.++. +. ..+.+++++|.++..
T Consensus 184 A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~-------------- 248 (296)
T PRK11189 184 AKENLKQRYEKLDKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLS-------------- 248 (296)
T ss_pred HHHHHHHHHhhCCccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH--------------
Confidence 999998887665444433 45666667766443 33333222 22 356799999999998
Q ss_pred CChHhHHHHHHHHHHHHhCC
Q 009801 483 TDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~~ 502 (525)
.+++++|+.+|++|++.+
T Consensus 249 --~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 249 --LGDLDEAAALFKLALANN 266 (296)
T ss_pred --CCCHHHHHHHHHHHHHhC
Confidence 778999999999999876
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.59 E-value=9.1e-13 Score=125.50 Aligned_cols=77 Identities=10% Similarity=-0.032 Sum_probs=36.7
Q ss_pred HhHHHHHHHHHHHHhc------CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHH
Q 009801 106 RVMEEATSEVESAAME------GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHD 177 (525)
Q Consensus 106 ~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~ 177 (525)
...+.++..+.+.... ..+..++.+|.+|.. .++.++|+..|+++++. +++.+++.+|.++...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 3455566666664421 113445555555554 44555555555554432 34444444444444444444
Q ss_pred HHHHHHHHH
Q 009801 178 KAVKLYAEL 186 (525)
Q Consensus 178 ~A~~~y~~~ 186 (525)
+|+..|+++
T Consensus 116 ~A~~~~~~A 124 (296)
T PRK11189 116 AAYEAFDSV 124 (296)
T ss_pred HHHHHHHHH
Confidence 444444444
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=4e-14 Score=127.07 Aligned_cols=231 Identities=15% Similarity=0.113 Sum_probs=190.9
Q ss_pred HHHHHhhhcCCCccCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhh
Q 009801 128 SVLGFLYGMGMMRERNKGKAFLYHHFAAEG-GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPI 206 (525)
Q Consensus 128 ~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~ 206 (525)
..+|.+|.. .+-+..|.+.++.++++ .+++....|...|-+.+.+..|+..|.+.++.
T Consensus 227 ~Q~gkCylr----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----------------- 285 (478)
T KOG1129|consen 227 QQMGKCYLR----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----------------- 285 (478)
T ss_pred HHHHHHHHH----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-----------------
Confidence 568888888 77888888888888876 58888888888888888888888888776542
Q ss_pred hhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHH
Q 009801 207 RIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEF 284 (525)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 284 (525)
-|.+.-.....++++... ++++.|+++|+.+++. .+.++.-.
T Consensus 286 -------------------------------fP~~VT~l~g~ARi~eam-----~~~~~a~~lYk~vlk~~~~nvEaiAc 329 (478)
T KOG1129|consen 286 -------------------------------FPFDVTYLLGQARIHEAM-----EQQEDALQLYKLVLKLHPINVEAIAC 329 (478)
T ss_pred -------------------------------CCchhhhhhhhHHHHHHH-----HhHHHHHHHHHHHHhcCCccceeeee
Confidence 235566667778888777 4999999999999987 45667777
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----CChhHHHH
Q 009801 285 LGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYN 357 (525)
Q Consensus 285 Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~ 357 (525)
+|.-|+. .++++-|+.+|++.+.+| +++...++|.+.+. .++++-++..|++|+.. .-++.|++
T Consensus 330 ia~~yfY----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-----aqQ~D~~L~sf~RAlstat~~~~aaDvWYN 400 (478)
T KOG1129|consen 330 IAVGYFY----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-----AQQIDLVLPSFQRALSTATQPGQAADVWYN 400 (478)
T ss_pred eeecccc----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-----hcchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence 7777777 789999999999999997 89999999999987 34899999999999865 24678999
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHH
Q 009801 358 LGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWAL 432 (525)
Q Consensus 358 lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~ 432 (525)
||.+.-. .+|+.-|.+.|+.++.. +|.+++++||.+-.. .|+.+.|..++..|-...| .+..++++.
T Consensus 401 lg~vaV~----iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r----~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 401 LGFVAVT----IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR----SGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred cceeEEe----ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh----cCchHHHHHHHHHhhhhCccccccccceeE
Confidence 9999998 99999999999999865 689999999998887 8999999999998877765 344455543
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=2e-12 Score=119.09 Aligned_cols=188 Identities=17% Similarity=0.102 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG 354 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a 354 (525)
+.++..+|.+|.. .+++++|+.+++++++.. +..++..+|.++.. .+++++|+++++++++. .++.+
T Consensus 31 ~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~ 101 (234)
T TIGR02521 31 AKIRVQLALGYLE----QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQ-----LGELEKAEDSFRRALTLNPNNGDV 101 (234)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCHHH
Confidence 4555666666666 666777777776666542 45666666666655 45667777777766654 34556
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+.++|.++.. .+++++|+.+++++++. .....+..+|.++.. .+++++|..++.++++..+ ..++.
T Consensus 102 ~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 102 LNNYGTFLCQ----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred HHHHHHHHHH----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 6667777766 67777777777776653 234566666777765 6777777777777776653 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
.+|.+++..|++++|..+++++++. .++..+..++.++.. .++.++|..+.+...
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARA----------------LGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------HhhHHHHHHHHHHHH
Confidence 7777777777777777777777654 344555556666655 556666666655443
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=2e-12 Score=119.08 Aligned_cols=191 Identities=20% Similarity=0.149 Sum_probs=166.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LY 315 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~ 315 (525)
..+.+++.+|.++... +++++|+.+++++++. +++.++..+|.+|.. .+++++|+.+++++++.. +.
T Consensus 29 ~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQ-----GDLEVAKENLDKALEHDPDDYLAYLALALYYQQ----LGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred cHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCH
Confidence 3477889999999888 4999999999999875 567899999999999 999999999999999764 67
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
.+...+|.++.. .+++++|+.+++++++. ..+..+..+|.++.. .+++++|..+++++++. +++.
T Consensus 100 ~~~~~~~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 170 (234)
T TIGR02521 100 DVLNNYGTFLCQ-----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPE 170 (234)
T ss_pred HHHHHHHHHHHH-----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChH
Confidence 889999999986 56999999999999875 345688899999999 99999999999999877 5678
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++..++.++.. .+++++|+.+++++++..+ +..+..++.++...|+.++|..+.+....
T Consensus 171 ~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 171 SLLELAELYYL----RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 89999999998 9999999999999988743 56667788889999999999998876654
No 53
>PLN03077 Protein ECB2; Provisional
Probab=99.57 E-value=6.7e-12 Score=137.95 Aligned_cols=381 Identities=13% Similarity=0.008 Sum_probs=242.8
Q ss_pred CCCCCCCccccCCCCCC-CCccc--HHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcC---ChHHHHHHHHhhhcCCCc
Q 009801 67 LDPGSWSPVFEPSIDPG-AINGS--YYITISKMMSAVTNGDVRVMEEATSEVESAAMEG---DPHARSVLGFLYGMGMMR 140 (525)
Q Consensus 67 ~~~~~a~~~~~~~~~~~-~~~a~--~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~ 140 (525)
+++.+|..+|.+....+ .|+.. ..+-..+.. .++.+.|.+.+....+.| +...+..|-..|..
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~-------~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k---- 335 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACEL-------LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS---- 335 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh----
Confidence 45566666666653222 22222 222222222 667888888888876654 56777788888887
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
.++.++|.+.|++... .+..++..+...|.+.|++++|++.|++..+.+.... .......-..+
T Consensus 336 ~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd---------------~~t~~~ll~a~ 399 (857)
T PLN03077 336 LGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD---------------EITIASVLSAC 399 (857)
T ss_pred cCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC---------------ceeHHHHHHHH
Confidence 8899999999988654 4566788888999999999999999998765532110 01122233344
Q ss_pred hccCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 009801 221 KSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVER 297 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~ 297 (525)
...|+.++|.++++...+.+ +...+..|...|.+. ++.++|.+.|++..+ .+..+|..+-..|.. .+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~-----g~~~~A~~vf~~m~~-~d~vs~~~mi~~~~~----~g 469 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC-----KCIDKALEVFHNIPE-KDVISWTSIIAGLRL----NN 469 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc-----CCHHHHHHHHHhCCC-CCeeeHHHHHHHHHH----CC
Confidence 55666666666666665553 344555566666555 366666666665433 233455555555555 55
Q ss_pred CHHHHHHHHHHHHH----------------------------------cC---CHHHHHHHHHHHHhCCCCCccCHHHHH
Q 009801 298 NYTKALEWLTHAAR----------------------------------QQ---LYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (525)
Q Consensus 298 ~~~~A~~~~~~a~~----------------------------------~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~ 340 (525)
+.++|+..|++... .+ +......|-.+|.. .|+.++|.
T Consensus 470 ~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k-----~G~~~~A~ 544 (857)
T PLN03077 470 RCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR-----CGRMNYAW 544 (857)
T ss_pred CHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH-----cCCHHHHH
Confidence 66666666666543 22 11122223344443 45888888
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 341 EYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 341 ~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
..|+.. ..+..+|..+...|.. .++.++|+..|++..+.| +...+..+-..+.. .++.++|.++|+.
T Consensus 545 ~~f~~~--~~d~~s~n~lI~~~~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~v~ea~~~f~~ 614 (857)
T PLN03077 545 NQFNSH--EKDVVSWNILLTGYVA----HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR----SGMVTQGLEYFHS 614 (857)
T ss_pred HHHHhc--CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh----cChHHHHHHHHHH
Confidence 888876 5677788888888888 889999999998877653 33344444444554 7889999999998
Q ss_pred HHH-cC--C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHH
Q 009801 418 VAE-RG--P-WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHS 493 (525)
Q Consensus 418 a~~-~~--~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 493 (525)
..+ .+ | ...+..+...+.+.|+.++|...+++.--..+...+..|-..+.. .++.+.|..
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~----------------~~~~e~~e~ 678 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI----------------HRHVELGEL 678 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------------cCChHHHHH
Confidence 874 33 2 346678888899999999999988875322345555554444443 334566666
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHH
Q 009801 494 LWWQASEQ--GNEHAALLIGDAYY 515 (525)
Q Consensus 494 ~~~~a~~~--~~~~a~~~lg~~y~ 515 (525)
..++.++. +++..+..|+++|-
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHH
Confidence 66666554 36777778888885
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.56 E-value=9e-13 Score=130.70 Aligned_cols=237 Identities=20% Similarity=0.175 Sum_probs=144.5
Q ss_pred HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-------CCH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhh
Q 009801 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------GNI---QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194 (525)
Q Consensus 125 ~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~~---~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~ 194 (525)
.+...||.+|.. .+++++|+.++++|++. .++ ..+..+|.+|...+++++|+.+|++++......+
T Consensus 200 ~~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 200 RTLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 444557777777 77777787777777664 232 2334477777777777777777777765432221
Q ss_pred hccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 009801 195 LISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274 (525)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~ 274 (525)
.. ..+..+.++.+||.+|... +++.+|..++++|+
T Consensus 276 G~----------------------------------------~h~~va~~l~nLa~ly~~~-----GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 276 GE----------------------------------------DHPAVAATLNNLAVLYYKQ-----GKFAEAEEYCERAL 310 (508)
T ss_pred CC----------------------------------------CCHHHHHHHHHHHHHHhcc-----CChHHHHHHHHHHH
Confidence 10 1112356789999999877 49999999999998
Q ss_pred hc-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 009801 275 DK-------GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (525)
Q Consensus 275 ~~-------~~---~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~ 344 (525)
+. .+ +..+.+++.++.. .+++++|..+++++++.- .
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q~al~i~------------~------------------ 356 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQKALKIY------------L------------------ 356 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHH------------H------------------
Confidence 64 11 3456667777777 777777777777765430 0
Q ss_pred HHHhC---CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 345 KAADN---EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----------GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 345 ~a~~~---~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
.+... ..+....+||.+|.. .+++++|..+|++|+.+ +....++++|..|.. .+++.+|
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~----~k~~~~a 428 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE----LKKYEEA 428 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH----hcccchH
Confidence 00000 123344556666666 66666666666666533 123455666666655 4555555
Q ss_pred HHHHHHHHHc------CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 412 TALYKLVAER------GP---WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 412 ~~~~~~a~~~------~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
...|..+... ++ ...+.+|+-+|-.+|++++|+++.++++.
T Consensus 429 ~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 429 EQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5555444322 22 23555777777777777777777777663
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=2.6e-11 Score=121.29 Aligned_cols=283 Identities=13% Similarity=-0.023 Sum_probs=207.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc--CC
Q 009801 164 MAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GN 241 (525)
Q Consensus 164 ~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~ 241 (525)
..-|.+-...|+++.|.+...++.+..+... -...-.+.+....|++++|.++++++.+. ++
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~----------------~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~ 151 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPV----------------LNLIKAAEAAQQRGDEARANQHLEEAAELAGND 151 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence 4556778889999999999988766432211 01233566778899999999999998664 32
Q ss_pred -HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHH
Q 009801 242 -AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYS 316 (525)
Q Consensus 242 -~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 316 (525)
..+....+.++... +++++|...+++..+. +++.++..++.+|.. .+|+++|++.+.+..+.+ ++.
T Consensus 152 ~l~~~~~~a~l~l~~-----~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 152 NILVEIARTRILLAQ-----NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR----SGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred chHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHH
Confidence 23455568888887 4999999999998875 788999999999999 999999999999998764 222
Q ss_pred HHH----HHHHHHHhCCCCCccCHHHHHHHHHHHHhC------CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 317 AYN----GIGYLYVKGYGVEKKNYTKAKEYFEKAADN------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 317 a~~----~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
... ....-... .+..+++...+.++.+. +++.....++..+.. .+++++|...++++++..
T Consensus 223 ~~~~l~~~a~~~~l~-----~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 223 EFADLEQKAEIGLLD-----EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred HHHHHHHHHHHHHHH-----HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhC
Confidence 221 11111111 11333344455555433 478899999999999 999999999999999873
Q ss_pred --CHHHH--HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--h--HHHHHHHHHHHhcCCHHHHHHHHHH--HHHc-Ch
Q 009801 387 --HQKAF--YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--W--SSLSRWALESYLKGDVGKAFLLYSR--MAEL-GY 455 (525)
Q Consensus 387 --~~~a~--~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~--~a~~~l~~~~~~~g~~~~A~~~~~~--a~~~-~~ 455 (525)
+.... ......... .++.+++++.++++++..| + .....+|++++..|++++|.+++++ +.+. .+
T Consensus 294 pd~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred CCcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 22211 122222232 5788999999999998865 4 4456899999999999999999995 5554 34
Q ss_pred HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 456 EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 456 ~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
+..+..+|.++.+ .++.++|.++|++++.
T Consensus 370 ~~~~~~La~ll~~----------------~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 370 ANDLAMAADAFDQ----------------AGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHH
Confidence 4456699999998 5678999999999875
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=6.1e-11 Score=118.02 Aligned_cols=285 Identities=11% Similarity=0.044 Sum_probs=206.9
Q ss_pred HHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC-CHHHHHHH-HHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCch
Q 009801 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-NIQSKMAV-AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIE 204 (525)
Q Consensus 127 ~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-~~~a~~~l-a~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~ 204 (525)
.+.-|.+... .||+++|.+...++.+.. ++...+.+ +......|+++.|..++.++.+..
T Consensus 87 ~~~~gl~a~~----eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-------------- 148 (398)
T PRK10747 87 QTEQALLKLA----EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA-------------- 148 (398)
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 3455555554 789999999988887753 44444445 444477888888888888875532
Q ss_pred hhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHH
Q 009801 205 PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAG-AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQS 281 (525)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a 281 (525)
++... .....+.++... +++++|+..+++..+. +++.+
T Consensus 149 ----------------------------------~~~~~~~~l~~a~l~l~~-----g~~~~Al~~l~~~~~~~P~~~~a 189 (398)
T PRK10747 149 ----------------------------------DNDQLPVEITRVRIQLAR-----NENHAARHGVDKLLEVAPRHPEV 189 (398)
T ss_pred ----------------------------------CcchHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCCCHHH
Confidence 12221 223347888777 4999999999998875 78999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHH------HHHHHHHhCCCCCccCHHHHHHHHHHHHh--CCC
Q 009801 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYN------GIGYLYVKGYGVEKKNYTKAKEYFEKAAD--NEE 351 (525)
Q Consensus 282 ~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~------~lg~~~~~g~~~~~~~~~~A~~~~~~a~~--~~~ 351 (525)
+..++.+|.. .+++++|+..+.+..+.. ++.... .++.+-.. ....+.+...++++...+ .++
T Consensus 190 l~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~---~~~~~~~~l~~~w~~lp~~~~~~ 262 (398)
T PRK10747 190 LRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA---MADQGSEGLKRWWKNQSRKTRHQ 262 (398)
T ss_pred HHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHhCCHHHhCC
Confidence 9999999999 999999999999988764 222111 11111111 001133444444444322 368
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+.+...++..+.. .++.++|...++++++.. ++......+.+ . .++.++++...++.++..| +....
T Consensus 263 ~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~----~~~~~~al~~~e~~lk~~P~~~~l~l 332 (398)
T PRK10747 263 VALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRL--K----TNNPEQLEKVLRQQIKQHGDTPLLWS 332 (398)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--c----CCChHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999999 999999999999999863 44332222322 2 5799999999999998875 55677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAELG-YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
.+|.++...+++++|..+|+++++.. +...+..++.++.. .++.++|..+|++++..
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~----------------~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR----------------LHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhh
Confidence 89999999999999999999999984 44556789999998 66789999999999764
No 57
>PLN03077 Protein ECB2; Provisional
Probab=99.54 E-value=2.7e-11 Score=133.20 Aligned_cols=205 Identities=12% Similarity=0.022 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHH
Q 009801 262 DRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~ 338 (525)
+.+.+.+.+..+++.+ +......|-.+|.+ .|+.++|...|+.. ..+..++..+...|.. .|+.++
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~-----~G~~~~ 572 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH--EKDVVSWNILLTGYVA-----HGKGSM 572 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHH----cCCHHHHHHHHHhc--CCChhhHHHHHHHHHH-----cCCHHH
Confidence 4455555555444432 22233445567777 89999999999987 5678888888888876 569999
Q ss_pred HHHHHHHHHhCC---ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 339 AKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 339 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
|+..|++..+.+ +..++..+-..+.. .++.++|..+|+...+. .+...+..+..++.. .|++++|
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r----~G~~~eA 644 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSR----SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR----AGKLTEA 644 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhh----cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----CCCHHHH
Confidence 999999988764 44566666667777 89999999999998743 355677788888887 8999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHH
Q 009801 412 TALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (525)
Q Consensus 412 ~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (525)
.+++++.--..+...+..|-..+...|+.+.|....++..+. +++..+..++.+|.. .++++
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~----------------~g~~~ 708 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD----------------AGKWD 708 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----------------CCChH
Confidence 999987632224555666666778889999998888888766 567788888999887 66788
Q ss_pred HHHHHHHHHHhC
Q 009801 490 CAHSLWWQASEQ 501 (525)
Q Consensus 490 ~A~~~~~~a~~~ 501 (525)
+|.+..+.--+.
T Consensus 709 ~a~~vr~~M~~~ 720 (857)
T PLN03077 709 EVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHHc
Confidence 888887765543
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=6.1e-11 Score=120.38 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 141 ERNKGKAFLYHHFAAEGG--NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~--~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
.||.+.|++.+..++.++ ++.+++.||.+|.+.|+.++++...-.++.+.+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p 204 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP 204 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 678888888888888764 678888888888888888888887777665433
No 59
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.7e-11 Score=115.48 Aligned_cols=396 Identities=17% Similarity=0.102 Sum_probs=248.7
Q ss_pred cCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCcc
Q 009801 66 NLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 66 ~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~ 141 (525)
.+|+..|+.+|..+ ++|.|.--+-+..-.|.. .++|++|+.--.+.. .|.-+.++..+|..... .
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~-------~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~----l 83 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYAS-------LGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG----L 83 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHH-------HhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh----c
Confidence 47788888888888 666654444455555655 888999999888865 56778889999998887 8
Q ss_pred CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhcc-----------------ccHH----HHHHHHHHHHHHHHhh---hh
Q 009801 142 RNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQ-----------------DMHD----KAVKLYAELAEIAVNS---FL 195 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~-----------------~~~~----~A~~~y~~~~~~~~~~---~~ 195 (525)
+++++|+..|.+.++. +|......|+..+... +++. -.-..|...++..+.+ ..
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 8999999999999875 4666667777666221 0000 0111222222222111 10
Q ss_pred ccCC-CCCchhhhhccc----chhhhhHhhhccCCcH-----HHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 009801 196 ISKD-SPVIEPIRIHNG----AEENKGALRKSRGEDD-----EAF----QILEYQAQKGNAGAMYKIGLFYYFGLRGLRR 261 (525)
Q Consensus 196 ~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~A~----~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~ 261 (525)
.... ..+......-.+ .....+.+........ +.. +..+..-........-.||...+.. +
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk-----k 238 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK-----K 238 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh-----h
Confidence 0000 000000000000 0000000000000000 000 0000001112344566788887655 6
Q ss_pred CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC-H--------HHHHHHHHHHHhCCCC
Q 009801 262 DRTKALMWFSKAADKG-EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL-Y--------SAYNGIGYLYVKGYGV 331 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-~--------~a~~~lg~~~~~g~~~ 331 (525)
++..|++.|.++++.. +..-+.+.+-+|.. .+.+.+.+.....+++.+. . .+...+|..|..
T Consensus 239 ~f~~a~q~y~~a~el~~~it~~~n~aA~~~e----~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k---- 310 (539)
T KOG0548|consen 239 DFETAIQHYAKALELATDITYLNNIAAVYLE----RGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK---- 310 (539)
T ss_pred hHHHHHHHHHHHHhHhhhhHHHHHHHHHHHh----ccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh----
Confidence 9999999999999875 33445678888888 8899999999999888761 1 223334444543
Q ss_pred CccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCCcCCHH
Q 009801 332 EKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH--QKAFYQLAKMFHTGVGLKKNLH 409 (525)
Q Consensus 332 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~y~~g~g~~~~~~ 409 (525)
.++++.++.+|++++..... ..+..+ .+..++++...+..+-.+. ......-|..++. .+|+.
T Consensus 311 -~~~~~~ai~~~~kaLte~Rt------~~~ls~----lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~ 375 (539)
T KOG0548|consen 311 -REDYEGAIKYYQKALTEHRT------PDLLSK----LKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYP 375 (539)
T ss_pred -HHhHHHHHHHHHHHhhhhcC------HHHHHH----HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHH
Confidence 46999999999998755322 344444 5555666655554433322 2233344667776 88999
Q ss_pred HHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCCh
Q 009801 410 MATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDA 485 (525)
Q Consensus 410 ~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~ 485 (525)
+|+..|.+|+..+| +..+.+.|.+|..+|++..|+...+.+++.+ ...++..-|.++.. .
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~----------------m 439 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA----------------M 439 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH----------------H
Confidence 99999999998875 4567788888999999999999988888874 56688888888877 8
Q ss_pred HhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Q 009801 486 ERHQCAHSLWWQASEQG--NEHAALLIGDAYYY 516 (525)
Q Consensus 486 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~ 516 (525)
++|++|+..|+++++.+ +.++.-.+..|+.-
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 88999999999998877 56677777777773
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=3.2e-12 Score=126.78 Aligned_cols=227 Identities=16% Similarity=0.108 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
..+..|+..|..++++++|+..++++++.-...+. . ..+.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-----------------------------~-----------~hl~ 239 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-----------------------------L-----------KHLV 239 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-----------------------------c-----------cCHH
Confidence 45666888888888888888888888765221110 0 0001
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
-...+..+|.+|... +++.+|+..|++|+.. .+ +..+.+||.+|.. .+++++|..++++|+
T Consensus 240 va~~l~~~a~~y~~~-----~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~----~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 240 VASMLNILALVYRSL-----GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK----QGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHH
Confidence 122333689999888 4999999999999864 23 3578899999988 999999999999997
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----
Q 009801 311 RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----- 385 (525)
Q Consensus 311 ~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----- 385 (525)
+.-.. .+.. +..+ .+..+.+++.++.. .+++++|..+|.+++++
T Consensus 311 ~I~~~--------~~~~-------~~~~------------v~~~l~~~~~~~~~----~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 311 EIYEK--------LLGA-------SHPE------------VAAQLSELAAILQS----MNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHH--------hhcc-------ChHH------------HHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhhc
Confidence 64100 0000 0000 11223444455555 55555555555555432
Q ss_pred --CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 386 --GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----------PWSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 386 --~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
.+ +....+||.+|.. .|++++|.++|++|+... ...+..++|..+.+.+++.+|...|.++
T Consensus 360 g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred cccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 22 4567889999998 999999999999998662 1457889999999999999999988888
Q ss_pred HHc---------ChHHHHHHHHHHHhhhCC
Q 009801 451 AEL---------GYEVAQSNAAWILDKYGE 471 (525)
Q Consensus 451 ~~~---------~~~~a~~~la~~~~~~~~ 471 (525)
... +....+.||+.+|...|.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 642 345588899999988666
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.2e-12 Score=126.51 Aligned_cols=222 Identities=15% Similarity=0.118 Sum_probs=180.4
Q ss_pred hhhHhhhccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009801 215 NKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYA 290 (525)
Q Consensus 215 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 290 (525)
..|..+.+.|+..+|.-.|+.++.. ++.+|+..||.+.... .+-..|+.-+++++++ ++-.++..||..|.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-----E~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-----ENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-----cchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 3566677888888898888888765 7999999999999888 4889999999999986 78899999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---C-CCccCHHHHHHHHHHHHhC----CChhHHHHHHHHH
Q 009801 291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGY---G-VEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMY 362 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~---~-~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y 362 (525)
. ++.-.+|+.++.+-+....+..+...+..-.... . ........-.++|..+... .+++.+..||.+|
T Consensus 365 N----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 365 N----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred h----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 9 9999999999999987764433322211111000 0 1111334444556665543 4799999999999
Q ss_pred HcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC
Q 009801 363 YKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG 438 (525)
Q Consensus 363 ~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g 438 (525)
.. .+++++|+..|+.|+.. .+...|+.||..+.+ ..+.++|+..|.+|+++.| ..+.++||..++.+|
T Consensus 441 ~l----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN----~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 441 NL----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN----GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hc----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC----CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 99 99999999999999976 688899999999998 7889999999999999975 789999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 009801 439 DVGKAFLLYSRMAEL 453 (525)
Q Consensus 439 ~~~~A~~~~~~a~~~ 453 (525)
.|++|.++|-.|+.+
T Consensus 513 ~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSM 527 (579)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999875
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=7.8e-11 Score=106.24 Aligned_cols=255 Identities=17% Similarity=0.159 Sum_probs=147.1
Q ss_pred cHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC------C
Q 009801 88 SYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG------N 159 (525)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------~ 159 (525)
-|..|.-++. .++.++|+..|...+ +++..+++..||.+|.+ .|..++|+..-+...+.. .
T Consensus 38 ~Yv~GlNfLL-------s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRs----RGEvDRAIRiHQ~L~~spdlT~~qr 106 (389)
T COG2956 38 DYVKGLNFLL-------SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRS----RGEVDRAIRIHQTLLESPDLTFEQR 106 (389)
T ss_pred HHHhHHHHHh-------hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHh----cchHHHHHHHHHHHhcCCCCchHHH
Confidence 4666776665 667889999888855 55667888999999998 889999999888777642 2
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
..|+..||.=|+..|-+|.|...|..+++.+.-
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef----------------------------------------------- 139 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF----------------------------------------------- 139 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-----------------------------------------------
Confidence 467888888888888888888888887653211
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-------PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
-..|.-.|-.+|... +++++|+..-++..+.+. +.-+..|+..+.. ..+.++|+.++++|++.
T Consensus 140 -a~~AlqqLl~IYQ~t-----reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 140 -AEGALQQLLNIYQAT-----REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSDVDRARELLKKALQA 209 (389)
T ss_pred -hHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhh
Confidence 123334444444333 355555555554444321 2233334444444 44555555555555544
Q ss_pred C--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-C
Q 009801 313 Q--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-G 386 (525)
Q Consensus 313 ~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~ 386 (525)
+ ...+-..+|.+... +|++++|++.++++++++. +.+...|-.+|.. .++.++...++.++.+. .
T Consensus 210 ~~~cvRAsi~lG~v~~~-----~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~----lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 210 DKKCVRASIILGRVELA-----KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ----LGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred CccceehhhhhhHHHHh-----ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHccC
Confidence 3 33344445555543 3455555555555555432 3344445555555 55555555555555544 2
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
.+.+...++...+. ..-.+.|..+..+-+...|
T Consensus 281 g~~~~l~l~~lie~----~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 281 GADAELMLADLIEL----QEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred CccHHHHHHHHHHH----hhChHHHHHHHHHHHhhCC
Confidence 33344444444443 3344445444444444443
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3.9e-12 Score=123.14 Aligned_cols=224 Identities=14% Similarity=0.057 Sum_probs=159.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH--HHcCCH
Q 009801 165 AVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ--AQKGNA 242 (525)
Q Consensus 165 ~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--~~~~~~ 242 (525)
..|..+++.|+..+|.-.|+.++..+|.... .+..+|.+....++-..||..++++ ++|++.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~hae----------------AW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl 353 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAE----------------AWQKLGITQAENENEQNAISALRRCLELDPTNL 353 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHH----------------HHHHhhhHhhhccchHHHHHHHHHHHhcCCccH
Confidence 3445555555555555555555555544431 2444555555555555566666655 456889
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-----CCCCCHHHHHHHHHHHHHc----C
Q 009801 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGA-----GVERNYTKALEWLTHAARQ----Q 313 (525)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~-----~~~~~~~~A~~~~~~a~~~----~ 313 (525)
+++..||..|-.. +.-.+|++.+.+=+....+..+..-+..=..+. ........-.++|..++.. .
T Consensus 354 eaLmaLAVSytNe-----g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 354 EALMALAVSYTNE-----GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred HHHHHHHHHHhhh-----hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999777 378889999988776554443322211111100 0112344455666666544 2
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
+++.+..||.+|.. .+++++|+.+|+.|+.. ++...|+.||-.+.. -.+..+|+..|.+|+++ +..+
T Consensus 429 DpdvQ~~LGVLy~l-----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN----~~~s~EAIsAY~rALqLqP~yVR 499 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNL-----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN----GNRSEEAISAYNRALQLQPGYVR 499 (579)
T ss_pred ChhHHhhhHHHHhc-----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC----CcccHHHHHHHHHHHhcCCCeee
Confidence 79999999999976 56999999999999876 688899999999999 88999999999999988 7899
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
+.++||..+.+ .|.|++|+++|-.|+.+.
T Consensus 500 ~RyNlgIS~mN----lG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 500 VRYNLGISCMN----LGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred eehhhhhhhhh----hhhHHHHHHHHHHHHHhh
Confidence 99999999998 999999999999998763
No 64
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.48 E-value=1.4e-12 Score=120.66 Aligned_cols=250 Identities=20% Similarity=0.202 Sum_probs=192.2
Q ss_pred HhhhccCCcHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--------hcCCHHHHH
Q 009801 218 ALRKSRGEDDEAFQILEYQAQKGN------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA--------DKGEPQSME 283 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~~~~------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~--------~~~~~~a~~ 283 (525)
.-..+.|+....+.+|+.+++.|. ...+..||..|... +||++|+++..--+ +.|.+.+.-
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL-----~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYL-----KDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhH-----hhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 345678999999999999988764 34567788888766 59999999876533 236778889
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHh-CC--CC--C----------ccCHHHHH
Q 009801 284 FLGEIYARGAGVERNYTKALEWLTHAARQ--------QLYSAYNGIGYLYVK-GY--GV--E----------KKNYTKAK 340 (525)
Q Consensus 284 ~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~-g~--~~--~----------~~~~~~A~ 340 (525)
+||..+.. .|++++|+.++.+-+.. ....++++||.+|.. |. |. + ....+.|.
T Consensus 100 NLGNtlKv----~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 100 NLGNTLKV----KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccchhhh----hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 99999987 99999999999887643 357799999999963 32 10 0 01355666
Q ss_pred HHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCC
Q 009801 341 EYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGL 404 (525)
Q Consensus 341 ~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~ 404 (525)
++|+.-++. ++ ..++-+||..|+- .++++.|+.+-+.-+++ |+ -.++.+||.++.-
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif---- 247 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF---- 247 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----
Confidence 666665543 33 3466788888888 99999999887665433 43 4578899999986
Q ss_pred cCCHHHHHHHHHHHH----HcCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cChHHHHHHHHHHHhh
Q 009801 405 KKNLHMATALYKLVA----ERGP----WSSLSRWALESYLKGDVGKAFLLYSRMAE--------LGYEVAQSNAAWILDK 468 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~----~~~~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~--------~~~~~a~~~la~~~~~ 468 (525)
.++++.|+++|++++ ++++ ++..|.||..|....++++|+.|+.+=+. .|...+++.||..+..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 899999999999985 4443 66788999999999999999999987542 2678899999999988
Q ss_pred hCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 469 YGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
.+..++|+.+.++.++
T Consensus 328 ----------------lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 ----------------LGEHRKALYFAELHLR 343 (639)
T ss_pred ----------------hhhHHHHHHHHHHHHH
Confidence 5567889888887664
No 65
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.47 E-value=1.1e-12 Score=121.44 Aligned_cols=270 Identities=17% Similarity=0.176 Sum_probs=184.3
Q ss_pred hHhHHHHHHHHHHHHhcCCh------HHHHHHHHhhhcCCCccCCHHHHHHHHHHHH--------cCCCHHHHHHHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDP------HARSVLGFLYGMGMMRERNKGKAFLYHHFAA--------EGGNIQSKMAVAYTY 170 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~------~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~--------~~~~~~a~~~la~~y 170 (525)
.++....+.+|+.+.+.|.. ..+..||..|.. .+|+++|++|-.--+ +.|...+.-+||..+
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy----L~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY----LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh----HhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 56677888888887766642 233456776666 778888877764322 135566677777777
Q ss_pred hccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH-HcCCHHHHHHHH
Q 009801 171 LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA-QKGNAGAMYKIG 249 (525)
Q Consensus 171 ~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~a~~~Lg 249 (525)
.-.|.+++|+.+..+-+..... .- ......|+|+||
T Consensus 106 Kv~G~fdeA~~cc~rhLd~are-------------------------------------------LgDrv~e~RAlYNlg 142 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARE-------------------------------------------LGDRVLESRALYNLG 142 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHH-------------------------------------------HhHHHhhhHHHhhhh
Confidence 7777777777766554332110 11 114578999999
Q ss_pred HHHHhcC---------------CCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 009801 250 LFYYFGL---------------RGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWL 306 (525)
Q Consensus 250 ~~y~~~~---------------~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~ 306 (525)
.+|...| ..+...++.|+++|..-+++ ++ ..++-+||..|+- .||++.|+...
T Consensus 143 nvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H 218 (639)
T KOG1130|consen 143 NVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFH 218 (639)
T ss_pred hhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHH
Confidence 9996654 01122466777777765543 32 3566778887777 89999999888
Q ss_pred HHHHHc----CC----HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHh----CC----ChhHHHHHHHHHHcCCCCcC
Q 009801 307 THAARQ----QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD----NE----EAGGHYNLGVMYYKGIGVKR 370 (525)
Q Consensus 307 ~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~----~~----~~~a~~~lg~~y~~g~~~~~ 370 (525)
+.-++. |+ -.++.+||.++.. .++++.|+++|++.+. .+ .+.+++.||..|.- .+
T Consensus 219 ~~RL~ia~efGDrAaeRRA~sNlgN~hif-----lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl----l~ 289 (639)
T KOG1130|consen 219 KLRLEIAQEFGDRAAERRAHSNLGNCHIF-----LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL----LK 289 (639)
T ss_pred HHHHHHHHHhhhHHHHHHhhcccchhhhh-----hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH----HH
Confidence 776543 32 3467888988875 6789999999988653 33 45678899999988 88
Q ss_pred CHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----hHHHHHHHHHH
Q 009801 371 DVKLACKYFLVAAN--------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----GP----WSSLSRWALES 434 (525)
Q Consensus 371 ~~~~A~~~~~~a~~--------~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~~ 434 (525)
++++|+.|..+-+. .|...+++.||..|.. .+..++|+.+..+.++. ++ ..+..++....
T Consensus 290 e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a----lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~ 365 (639)
T KOG1130|consen 290 EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA----LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLI 365 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHH
Confidence 99999998877542 2677888889988887 88888888888877654 22 23455666666
Q ss_pred HhcC
Q 009801 435 YLKG 438 (525)
Q Consensus 435 ~~~g 438 (525)
...|
T Consensus 366 ~~lG 369 (639)
T KOG1130|consen 366 LELG 369 (639)
T ss_pred HHhC
Confidence 6666
No 66
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.47 E-value=8.5e-12 Score=102.86 Aligned_cols=199 Identities=18% Similarity=0.218 Sum_probs=145.8
Q ss_pred CCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH-hcCChHHHHHHHHhhhcCC-CccCCHHHHHHHHHHHHcCCC
Q 009801 82 PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-MEGDPHARSVLGFLYGMGM-MRERNKGKAFLYHHFAAEGGN 159 (525)
Q Consensus 82 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~y~~g~-g~~~d~~~A~~~~~~a~~~~~ 159 (525)
...|++.+.||-..- +..+|+++|.+.|++.. +.+.+.+.|.+|..+..|. |..++..+|+..|+.+.+.+.
T Consensus 31 EK~Pe~C~lLgdYlE------gi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~ 104 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLE------GIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI 104 (248)
T ss_pred cCCchHHHHHHHHHH------HHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC
Confidence 355888888887433 34889999999999965 6688999999999999887 478999999999999999999
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
+.+...+|.++.......++ .-+..+|.+++.++.+.
T Consensus 105 ~~aC~~~gLl~~~g~~~r~~-------------------------------------------dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 105 PQACRYLGLLHWNGEKDRKA-------------------------------------------DPDSEKAERYMTRACDL 141 (248)
T ss_pred HHHHhhhhhhhccCcCCccC-------------------------------------------CCCcHHHHHHHHHhccC
Confidence 99999999999886544332 12456788888888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA-DKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAY 318 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 318 (525)
++..+++.|..+|..+. ++ +..+. -.+.|.-...++.+ .+|.++|.++--+|++.+++.++
T Consensus 142 ~~~~aCf~LS~m~~~g~-------~k----~~t~ap~~g~p~~~~~~~~~-------~kDMdka~qfa~kACel~~~~aC 203 (248)
T KOG4014|consen 142 EDGEACFLLSTMYMGGK-------EK----FKTNAPGEGKPLDRAELGSL-------SKDMDKALQFAIKACELDIPQAC 203 (248)
T ss_pred CCchHHHHHHHHHhccc-------hh----hcccCCCCCCCcchhhhhhh-------hHhHHHHHHHHHHHHhcCChHHH
Confidence 99999999999998662 11 11111 11223222233322 44677777777777777777777
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHHHh
Q 009801 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAAD 348 (525)
Q Consensus 319 ~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~ 348 (525)
.++..+|..|.|+++ |.++|.++-.+|.+
T Consensus 204 AN~SrMyklGDGv~K-de~~Aekyk~rA~e 232 (248)
T KOG4014|consen 204 ANVSRMYKLGDGVPK-DEDQAEKYKDRAKE 232 (248)
T ss_pred hhHHHHHHccCCCCc-cHHHHHHHHHHHHH
Confidence 777777777777766 77777777666654
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=4.2e-11 Score=103.23 Aligned_cols=189 Identities=19% Similarity=0.114 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSA 317 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 317 (525)
..+...||.-|+..+ |+..|...+++|++. .+..++.-++.+|.. .|+.+.|.+.|++|+... +.+.
T Consensus 35 a~arlqLal~YL~~g-----d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~----~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 35 AKARLQLALGYLQQG-----DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK----LGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCccch
Confidence 467788999999885 999999999999976 567899999999999 999999999999998764 7889
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~ 391 (525)
+++.|..+-. +|.+++|..+|++|+.. ..+.++.|+|.|-.+ .++.+.|..+|+++++. +.+.+.
T Consensus 106 LNNYG~FLC~-----qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 106 LNNYGAFLCA-----QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred hhhhhHHHHh-----CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHH
Confidence 9999988765 56999999999999876 357789999999999 99999999999999987 577888
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHH-HHHHH-HHHhcCCHHHHHHHHHHHHH
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSL-SRWAL-ESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~-~~l~~-~~~~~g~~~~A~~~~~~a~~ 452 (525)
..++..... .+++..|..++++-...+...+- ..||+ +-...||-..|-+|=.+...
T Consensus 177 l~~a~~~~~----~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 177 LELARLHYK----AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHh----cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888887 89999999999988877654432 23443 44556776666665544443
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=5.3e-11 Score=102.63 Aligned_cols=160 Identities=21% Similarity=0.144 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG 354 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a 354 (525)
..+...||.-|+. .+|+..|..-+++|++.+ +..++..++.+|.. .|+.+.|.+.|++|+.. ++.+.
T Consensus 35 a~arlqLal~YL~----~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-----~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 35 AKARLQLALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-----LGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----cCChhhHHHHHHHHHhcCCCccch
Confidence 3567889999999 999999999999999875 78899999999987 67999999999999977 68999
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
++|.|+.+.. ++.+++|..+|++|+.. ..+.++-|+|.|... .++++.|.++|+++++.++ +.+..
T Consensus 106 LNNYG~FLC~----qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 106 LNNYGAFLCA----QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred hhhhhHHHHh----CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHHH
Confidence 9999999999 99999999999999987 357889999999998 9999999999999999975 66778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCh
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~~~ 455 (525)
.++...+..|++..|..++++-...+.
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhccc
Confidence 899999999999999999999887643
No 69
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.43 E-value=2.4e-10 Score=103.76 Aligned_cols=317 Identities=12% Similarity=0.041 Sum_probs=186.7
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--C
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--G 158 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~ 158 (525)
.+.+-.+.+|...+. .+.+..|+..|..|+ +|.+-.+.|..|..|.. .|.-+-|+.-+.+.++. +
T Consensus 36 advekhlElGk~lla-------~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA----mGksk~al~Dl~rVlelKpD 104 (504)
T KOG0624|consen 36 ADVEKHLELGKELLA-------RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA----MGKSKAALQDLSRVLELKPD 104 (504)
T ss_pred HHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh----hcCCccchhhHHHHHhcCcc
Confidence 345556889988886 888999999999987 56788889999999998 77888899999998875 6
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchh--hhhHhhhccCCcHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE--NKGALRKSRGEDDEAFQILEYQ 236 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~~ 236 (525)
...|...-|.+++.+|.++.|..-|+++++..+.+.... .....+.+....+. .....+...|+...++.+..+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 778999999999999999999999999987654321110 00000000011111 1111133455666666666665
Q ss_pred HHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 237 AQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 237 ~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
++. =++..+..-+.+|... +++.+||.-++.+.++ ++...++.+..+++. .+|.+.++.-.+.+++.
T Consensus 182 lEi~~Wda~l~~~Rakc~i~~-----~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~----vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 182 LEIQPWDASLRQARAKCYIAE-----GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT----VGDAENSLKEIRECLKL 252 (504)
T ss_pred HhcCcchhHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhccccchHHHHHHHHHHHh----hhhHHHHHHHHHHHHcc
Confidence 444 3445555555666555 3666666666666554 555666666666666 66666666666666655
Q ss_pred C-CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHH--
Q 009801 313 Q-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK-- 389 (525)
Q Consensus 313 ~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~-- 389 (525)
+ +...++-. |.. .+...+.+.-.++++ . .+++.+++...++.++.....
T Consensus 253 dpdHK~Cf~~---YKk-----lkKv~K~les~e~~i----------------e----~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 253 DPDHKLCFPF---YKK-----LKKVVKSLESAEQAI----------------E----EKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred CcchhhHHHH---HHH-----HHHHHHHHHHHHHHH----------------h----hhhHHHHHHHHHHHHhcCCcccc
Confidence 3 11111100 000 001111111111111 1 345555555555555443221
Q ss_pred ----HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 390 ----AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 390 ----a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
....+..++.. .+++-+|+.-..++++.++ .+++...+.+|.....|+.|+.-|++|.+.+
T Consensus 305 ir~~~~r~~c~C~~~----d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYRE----DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeeeheeeecccc----cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 12223444444 5666666666666666654 3455566666666666666666666666553
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=7.7e-10 Score=99.93 Aligned_cols=253 Identities=19% Similarity=0.179 Sum_probs=187.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC--
Q 009801 163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG-- 240 (525)
Q Consensus 163 ~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 240 (525)
-+--|.-++-.++.++|++.|..+++.++..+ +....+|.++++.|..+.||.+.+...+.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~----------------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl 101 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETF----------------EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL 101 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhh----------------HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC
Confidence 34455566667888999999988887655543 235678888899999999998888876552
Q ss_pred ----CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC
Q 009801 241 ----NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE--PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL 314 (525)
Q Consensus 241 ----~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~ 314 (525)
...|.+.||.-|...| -++.|...|...++.+. ..|.-.|-.+|.. .+++++|++.-++....+.
T Consensus 102 T~~qr~lAl~qL~~Dym~aG-----l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 102 TFEQRLLALQQLGRDYMAAG-----LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGG 172 (389)
T ss_pred chHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCC
Confidence 2457888888888774 88889999888887543 4678888888888 8889999888888777652
Q ss_pred -------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 315 -------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 315 -------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+..++.|+..+.. ..+.++|+.++++|++. ....+-..+|.+... .+++++|++.++++++.
T Consensus 173 q~~~~eIAqfyCELAq~~~~-----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALA-----SSDVDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVLEQ 243 (389)
T ss_pred ccchhHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHHHh
Confidence 3445556665554 45888888888888866 467788888888888 88888888888888887
Q ss_pred CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 386 GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 386 ~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+. +++...|..+|.. .++.++.+.++.++.+..+ ..+..-++.......-.+.|..++.+-+..
T Consensus 244 n~~yl~evl~~L~~~Y~~----lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQ----LGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred ChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 64 4677778888887 8888888888888887764 445555565555555566666665544443
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.6e-09 Score=100.97 Aligned_cols=341 Identities=14% Similarity=0.062 Sum_probs=222.5
Q ss_pred cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhh-----
Q 009801 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF----- 194 (525)
Q Consensus 121 ~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~----- 194 (525)
+++.+-.+..+.+|.. .++.++|+...-.... .-.+.....++.++...++..++.-.|...+..-+--.
T Consensus 94 ~~~~e~~r~~aecy~~----~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ 169 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQ----IGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEA 169 (564)
T ss_pred cccHHHHHHHHHHHHH----HccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHH
Confidence 4556667778888887 7777788777665543 34566777888888888777787777776654321100
Q ss_pred --hccCCCCCchhhh--------hcccchh-hhhHhhhccCCcHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCC
Q 009801 195 --LISKDSPVIEPIR--------IHNGAEE-NKGALRKSRGEDDEAFQILEYQ----AQKGNAGAMYKIGLFYYFGLRGL 259 (525)
Q Consensus 195 --~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~----~~~~~~~a~~~Lg~~y~~~~~~~ 259 (525)
.....+..+.+.+ .....+. .+.....-.++...|...+--+ .-+++..-+..+|.++...|
T Consensus 170 ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G--- 246 (564)
T KOG1174|consen 170 LLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG--- 246 (564)
T ss_pred HHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc---
Confidence 0000000000000 0000000 0111122223333333222221 11267777778888877774
Q ss_pred ccCHHHHHHHHHHHHhc--CCHHH----------------------------------HHHHHHHHHcCCCCCCCHHHHH
Q 009801 260 RRDRTKALMWFSKAADK--GEPQS----------------------------------MEFLGEIYARGAGVERNYTKAL 303 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~--~~~~a----------------------------------~~~Lg~~y~~g~~~~~~~~~A~ 303 (525)
|+.+|+..|+++.-. .+..+ |+--+.+.+. .++++.|+
T Consensus 247 --dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~----~K~~~rAL 320 (564)
T KOG1174|consen 247 --DYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD----EKKFERAL 320 (564)
T ss_pred --CchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh----hhhHHHHH
Confidence 778888888776432 11222 2222333333 56778888
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 304 EWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 304 ~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
.+-+++++.+ +.+++..-|.++.. .++.++|+-.|+.|.... +-+.+-.|-.+|.. .+.+.+|...-
T Consensus 321 ~~~eK~I~~~~r~~~alilKG~lL~~-----~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA----~~~~kEA~~~A 391 (564)
T KOG1174|consen 321 NFVEKCIDSEPRNHEALILKGRLLIA-----LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA----QKRFKEANALA 391 (564)
T ss_pred HHHHHHhccCcccchHHHhccHHHHh-----ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh----hchHHHHHHHH
Confidence 8888887764 67777778887765 457888888888887664 45566677777888 78888887776
Q ss_pred HHHHHc--CCHHHHHHHH-HHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 009801 380 LVAANA--GHQKAFYQLA-KMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL- 453 (525)
Q Consensus 380 ~~a~~~--~~~~a~~~l~-~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~- 453 (525)
..+.+. .++.++.-+| .+... ...--++|..++++++.+.| ..|-..++.+....|.+++++..+++++..
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~---dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFP---DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeecc---CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 666654 5666766665 33332 35667999999999999975 678889999999999999999999999876
Q ss_pred ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 454 ~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.+...+..||.+... .+.+++|+.+|..|+..+
T Consensus 469 ~D~~LH~~Lgd~~~A----------------~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRA----------------QNEPQKAMEYYYKALRQD 501 (564)
T ss_pred cccHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHhcC
Confidence 677788999998876 778999999999999876
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.41 E-value=2.6e-10 Score=116.63 Aligned_cols=353 Identities=14% Similarity=0.014 Sum_probs=235.7
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.++.+.|+..|-++. ++..+.++-.||.+|.. --|...|.+.|.+|-+. ++.++--..+..|....+.+.|.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd----~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRD----SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHH
Confidence 567899999999987 45668999999999998 56999999999999765 57788889999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCC
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRG 258 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~ 258 (525)
...-++.+..+..... ..+...|..+...++.-.|+..++.+ ++|.+..++..||.+|...|
T Consensus 547 ~I~l~~~qka~a~~~k--------------~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG-- 610 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACK--------------ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG-- 610 (1238)
T ss_pred HHHHHHhhhchHHHHH--------------hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC--
Confidence 9966666554432211 22334777788899999999999998 45689999999999998884
Q ss_pred CccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHh
Q 009801 259 LRRDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ---------QLYSAYNGIGYLYVK 327 (525)
Q Consensus 259 ~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~ 327 (525)
.+..|++.|.+|...+ +..+.+..+.+-.. .|.+.+|+..+...+.. |.++++..++..+..
T Consensus 611 ---ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd----~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~ 683 (1238)
T KOG1127|consen 611 ---RYSHALKVFTKASLLRPLSKYGRFKEAVMECD----NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI 683 (1238)
T ss_pred ---ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999998764 45677778888777 88999999998887643 344444444444432
Q ss_pred -CC-CCCccCHHHHHHHHHHHHhCC---ChhHHHHHH-------------------HHHHc---CCCCcCCHH---HHHH
Q 009801 328 -GY-GVEKKNYTKAKEYFEKAADNE---EAGGHYNLG-------------------VMYYK---GIGVKRDVK---LACK 377 (525)
Q Consensus 328 -g~-~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg-------------------~~y~~---g~~~~~~~~---~A~~ 377 (525)
|. +....-.+++++.|.-++... +...+..+| .++.. +.+..++.+ -+.+
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~ 763 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYE 763 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHH
Confidence 11 011112333444443333221 111111111 11111 111122222 2344
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHc-----CCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009801 378 YFLVAANA-GHQKAFYQLAKMFHT-----GVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSR 449 (525)
Q Consensus 378 ~~~~a~~~-~~~~a~~~l~~~y~~-----g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~ 449 (525)
++-..+.. .++..+++||..|.. |. ...+-..|+.++++++... +..-+..||.+ -..|++.-|..+|-+
T Consensus 764 c~~~hlsl~~~~~~WyNLGinylr~f~~l~e-t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIk 841 (1238)
T KOG1127|consen 764 CGIAHLSLAIHMYPWYNLGINYLRYFLLLGE-TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIK 841 (1238)
T ss_pred HhhHHHHHhhccchHHHHhHHHHHHHHHcCC-cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhh
Confidence 44444443 456677777766543 22 2344468888888888764 45566667765 555788888888887
Q ss_pred HHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 450 MAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 450 a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+... -..-++.|+|.++.+ .+|++-|...|.++....
T Consensus 842 s~~sep~~~~~W~NlgvL~l~----------------n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 842 SRFSEPTCHCQWLNLGVLVLE----------------NQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred hhhccccchhheeccceeEEe----------------cccHHHhhHHHHhhhhcC
Confidence 7655 345567777777655 667777777777665554
No 73
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.35 E-value=4.6e-09 Score=95.64 Aligned_cols=302 Identities=17% Similarity=0.107 Sum_probs=183.1
Q ss_pred CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCC
Q 009801 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD 199 (525)
Q Consensus 122 ~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~ 199 (525)
.+.+-++.||.-..- .+.+..|+..|..|++. ++..+++.-|..|+..|+-.-|+.-+.+++++.|...
T Consensus 36 advekhlElGk~lla----~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~----- 106 (504)
T KOG0624|consen 36 ADVEKHLELGKELLA----RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM----- 106 (504)
T ss_pred HHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH-----
Confidence 445567788887666 78999999999999985 4788999999999999999999999999988644432
Q ss_pred CCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 009801 200 SPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG-----NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274 (525)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~ 274 (525)
+.....+.+...+|.++.|+.-|.+.++.+ ..+++..|+.+-...
T Consensus 107 -----------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~------------------- 156 (504)
T KOG0624|consen 107 -----------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW------------------- 156 (504)
T ss_pred -----------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH-------------------
Confidence 224456667777777777777777765542 223333333321111
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--C
Q 009801 275 DKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--E 350 (525)
Q Consensus 275 ~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~ 350 (525)
.+.....-+.. .||...|+.+..+.++.. +++.+..-+.+|.. .+++.+|+.-++.+... +
T Consensus 157 ------~l~~ql~s~~~----~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~-----~~e~k~AI~Dlk~askLs~D 221 (504)
T KOG0624|consen 157 ------VLVQQLKSASG----SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA-----EGEPKKAIHDLKQASKLSQD 221 (504)
T ss_pred ------HHHHHHHHHhc----CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhcccc
Confidence 00000001111 344444444444444443 23333333444432 23444455444444332 3
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHH-------------HHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKA-------------FYQLAKMFHTGVGLKKNLHMATALY 415 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a-------------~~~l~~~y~~g~g~~~~~~~A~~~~ 415 (525)
+.++++.++.+++. .++.+.++.-.+..+..+ +... +-..-..- . .+++.++++-.
T Consensus 222 nTe~~ykis~L~Y~----vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~i-e----~~~~t~cle~g 292 (504)
T KOG0624|consen 222 NTEGHYKISQLLYT----VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAI-E----EKHWTECLEAG 292 (504)
T ss_pred chHHHHHHHHHHHh----hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHH-h----hhhHHHHHHHH
Confidence 44444444444444 444444444444444331 1110 11111111 1 57888888888
Q ss_pred HHHHHcCChHHH------HHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHh
Q 009801 416 KLVAERGPWSSL------SRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAER 487 (525)
Q Consensus 416 ~~a~~~~~~~a~------~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 487 (525)
++.++.+|.... -.+...+-..|++-+|+....++++.. +..++..-|..|.- .+.
T Consensus 293 e~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~----------------dE~ 356 (504)
T KOG0624|consen 293 EKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG----------------DEM 356 (504)
T ss_pred HHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh----------------hHH
Confidence 888888765332 234555667889999999999999884 45677777777644 778
Q ss_pred HHHHHHHHHHHHhCC
Q 009801 488 HQCAHSLWWQASEQG 502 (525)
Q Consensus 488 ~~~A~~~~~~a~~~~ 502 (525)
|+.||.-|++|.+.+
T Consensus 357 YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 357 YDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999876
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=1.5e-08 Score=101.64 Aligned_cols=356 Identities=14% Similarity=0.066 Sum_probs=252.4
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----CCHHHHHHHHH-HHhccccHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GNIQSKMAVAY-TYLRQDMHD 177 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~la~-~y~~~~~~~ 177 (525)
-+++..+.+.|+++. -.+..+-++.++..|.. -+...+|+...+..... .++..+...+. ++.+.+.++
T Consensus 336 ~g~f~~lae~fE~~~~~~~~~~e~w~~~als~sa----ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSA----AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH----hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 577899999999965 34667888888888887 67789999999988653 45666655554 455689999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh-----hccCCcHHHHHHHHHHHH--cCCHHHHHHHHH
Q 009801 178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR-----KSRGEDDEAFQILEYQAQ--KGNAGAMYKIGL 250 (525)
Q Consensus 178 ~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~ 250 (525)
+++++-.+++........ .+.....+..++........ .+.-...++++.++++++ +.||.+.+.++.
T Consensus 412 egldYA~kai~~~~~~~~-----~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal 486 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRS-----HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL 486 (799)
T ss_pred hHHHHHHHHHHHhhhhhh-----hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 999999999984311100 00000111111111100000 112234578888888754 589999999999
Q ss_pred HHHhcCCCCccCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC------------
Q 009801 251 FYYFGLRGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QL------------ 314 (525)
Q Consensus 251 ~y~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~------------ 314 (525)
-|... ++.+.|..+.+++++. +++.+|..|+.++.. .+++..|+....-+++. ++
T Consensus 487 q~A~~-----R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 487 QYAEQ-----RQLTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHH-----HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 99777 5999999999999987 578999999999998 99999999999988753 11
Q ss_pred -----HH-----HHHHHHHHH-----------------HhCCCCCccCHHHHHHHHHHHHhC--------C---------
Q 009801 315 -----YS-----AYNGIGYLY-----------------VKGYGVEKKNYTKAKEYFEKAADN--------E--------- 350 (525)
Q Consensus 315 -----~~-----a~~~lg~~~-----------------~~g~~~~~~~~~~A~~~~~~a~~~--------~--------- 350 (525)
++ +...|+.+- ..|.+....+..+|++..+++... +
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 11 111111111 011222333555555555554311 1
Q ss_pred ----Ch-------hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 351 ----EA-------GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 351 ----~~-------~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
.. ..+...+..+.. .++.++|...+..+... -.+..++..|.++.. .+..++|.+.|..
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~----~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLL----SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEEAKEAFLV 709 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHHHHHHHHH
Confidence 11 123456777777 78888888888887766 356777888999987 9999999999999
Q ss_pred HHHcCC--hHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHH
Q 009801 418 VAERGP--WSSLSRWALESYLKGDVGKAFL--LYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCA 491 (525)
Q Consensus 418 a~~~~~--~~a~~~l~~~~~~~g~~~~A~~--~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A 491 (525)
|+..+| +.+...+|.++.+.|+..-|.. .+..|++.+ ++.+|+.+|.+... .|+.+.|
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~----------------~Gd~~~A 773 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK----------------LGDSKQA 773 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------------ccchHHH
Confidence 999875 7788899999999998777777 899998874 89999999999998 6677899
Q ss_pred HHHHHHHHhCC
Q 009801 492 HSLWWQASEQG 502 (525)
Q Consensus 492 ~~~~~~a~~~~ 502 (525)
..+|.-|++..
T Consensus 774 aecf~aa~qLe 784 (799)
T KOG4162|consen 774 AECFQAALQLE 784 (799)
T ss_pred HHHHHHHHhhc
Confidence 99999998865
No 75
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.30 E-value=5.6e-08 Score=95.81 Aligned_cols=305 Identities=13% Similarity=0.043 Sum_probs=209.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc--C
Q 009801 163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--G 240 (525)
Q Consensus 163 ~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~ 240 (525)
+..-+..+...+-++-|...|..+++..+.. .-.+.....+...-|..++-..++++++.. .
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k----------------~slWlra~~~ek~hgt~Esl~Allqkav~~~pk 582 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCK----------------KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK 582 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccch----------------hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc
Confidence 3334444555555666666666665543221 111223333444556777777888888765 4
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QLYSA 317 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a 317 (525)
.+..+...+..++.. +|...|...+.+|.+. ++...++.--.+-.. ...++.|..+|.++-.. +....
T Consensus 583 ae~lwlM~ake~w~a-----gdv~~ar~il~~af~~~pnseeiwlaavKle~e----n~e~eraR~llakar~~sgTeRv 653 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKA-----GDVPAARVILDQAFEANPNSEEIWLAAVKLEFE----NDELERARDLLAKARSISGTERV 653 (913)
T ss_pred chhHHHHHHHHHHhc-----CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc----cccHHHHHHHHHHHhccCCcchh
Confidence 555566666666666 4888888888888875 334444444444444 66788899998888654 35555
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQ 393 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 393 (525)
+..-+.+... .++.++|+.+++++++. .....+..+|.++.+ .++.+.|...|...++. +...-+..
T Consensus 654 ~mKs~~~er~-----ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 654 WMKSANLERY-----LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----MENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred hHHHhHHHHH-----hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHHHHHhccccCCCCchHHHH
Confidence 5555555443 45888999999888887 567788889999998 88999999888888776 56677777
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHH--HHhcCCHHHHHHHHHHHHH-------------------
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALE--SYLKGDVGKAFLLYSRMAE------------------- 452 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~--~~~~g~~~~A~~~~~~a~~------------------- 452 (525)
|+.+-+. .++..+|...+.++.-.+|.++.+.|..+ -.+.|+.+.|.....+|++
T Consensus 725 LakleEk----~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 725 LAKLEEK----DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHH----hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 7777776 77888888888888888876666666554 4467788888877777742
Q ss_pred -------------cChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcc
Q 009801 453 -------------LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYG 517 (525)
Q Consensus 453 -------------~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g 517 (525)
.+++.++..+|.+... ...+++|..||.+|+..+ ++|++..+=..+. -
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~----------------e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel-~ 863 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWS----------------EKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL-R 863 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHH----------------HHHHHHHHHHHHHHHccCCccchHHHHHHHHHH-H
Confidence 1466777777777766 778999999999999865 6777766554444 5
Q ss_pred cccCC
Q 009801 518 RVRHS 522 (525)
Q Consensus 518 ~g~~~ 522 (525)
.|+++
T Consensus 864 hG~ee 868 (913)
T KOG0495|consen 864 HGTEE 868 (913)
T ss_pred hCCHH
Confidence 55544
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=1.5e-08 Score=100.01 Aligned_cols=298 Identities=12% Similarity=-0.024 Sum_probs=170.6
Q ss_pred hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhh
Q 009801 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-----GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194 (525)
Q Consensus 120 ~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~ 194 (525)
+|+.+.++..+|.+|.. .++.+.|...+.++... +..+.....+.++...+++++|+..++++++..
T Consensus 2 dp~~~~a~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLL----GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY---- 73 (355)
T ss_pred CCccHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 56677777777777766 45666666666665432 234555666777777777777777777765532
Q ss_pred hccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 009801 195 LISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274 (525)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~ 274 (525)
|+++.++.. +..+...+ ...+....+.+.+....
T Consensus 74 --------------------------------------------P~~~~a~~~-~~~~~~~~-~~~~~~~~~~~~l~~~~ 107 (355)
T cd05804 74 --------------------------------------------PRDLLALKL-HLGAFGLG-DFSGMRDHVARVLPLWA 107 (355)
T ss_pred --------------------------------------------CCcHHHHHH-hHHHHHhc-ccccCchhHHHHHhccC
Confidence 233333332 22222221 11123333433333311
Q ss_pred hc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC
Q 009801 275 DK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE 350 (525)
Q Consensus 275 ~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~ 350 (525)
.. +...+...+|.++.. .|++++|+..++++++.. ++.++..+|.++.. .+++++|+.+++++++..
T Consensus 108 ~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-----~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-----QGRFKEGIAFMESWRDTW 178 (355)
T ss_pred cCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-----cCCHHHHHHHHHhhhhcc
Confidence 11 334555667777777 778888888888887654 56677777877765 457888888888877653
Q ss_pred C--h----hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-HHHHH---HHHHHHHcCCCCcCCHHHHHHH--H-HH
Q 009801 351 E--A----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-QKAFY---QLAKMFHTGVGLKKNLHMATAL--Y-KL 417 (525)
Q Consensus 351 ~--~----~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~---~l~~~y~~g~g~~~~~~~A~~~--~-~~ 417 (525)
. + ..+..+|.++.. .+++++|+..|+++..... ..... ..+..+..+. ..+....+..| . ..
T Consensus 179 ~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~w~~~~~~ 253 (355)
T cd05804 179 DCSSMLRGHNWWHLALFYLE----RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE-LAGHVDVGDRWEDLADY 253 (355)
T ss_pred CCCcchhHHHHHHHHHHHHH----CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH-hcCCCChHHHHHHHHHH
Confidence 1 2 234567888888 8888888888888764322 11111 1111111100 02222222222 1 11
Q ss_pred HHHcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------C----hHHHHHHHHHHHhhhCCCccccCCCCCC
Q 009801 418 VAERG----PWSSLSRWALESYLKGDVGKAFLLYSRMAEL-------G----YEVAQSNAAWILDKYGEGSMCMGESGFC 482 (525)
Q Consensus 418 a~~~~----~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~----~~~a~~~la~~~~~~~~~~~~~~~~~~~ 482 (525)
..... ........+.++...|+.++|...++..... + ........|.++..
T Consensus 254 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~-------------- 319 (355)
T cd05804 254 AAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA-------------- 319 (355)
T ss_pred HHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH--------------
Confidence 11110 1122236777888899999999998876542 1 13344556666666
Q ss_pred CChHhHHHHHHHHHHHHhC
Q 009801 483 TDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~ 501 (525)
.+++++|+..+..++..
T Consensus 320 --~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 --EGNYATALELLGPVRDD 336 (355)
T ss_pred --cCCHHHHHHHHHHHHHH
Confidence 77899999999988753
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=6.3e-09 Score=104.33 Aligned_cols=321 Identities=15% Similarity=0.080 Sum_probs=193.4
Q ss_pred CCcccHHHHHHHHHHHhhcCC----hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 84 AINGSYYITISKMMSAVTNGD----VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~----~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
.+.++..+|..|-..+..... .....+++..+++++ ++.|+.+.|.++..|.. .++.+.|+.+.++++..
T Consensus 432 ~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 432 KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAE----QRQLTSALDYAREALAL 507 (799)
T ss_pred hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----HHhHHHHHHHHHHHHHh
Confidence 477888899888766544432 123678888899975 77899999999999998 99999999999999876
Q ss_pred ---CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHH
Q 009801 158 ---GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE 234 (525)
Q Consensus 158 ---~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 234 (525)
.++.++..|+.+....+++..|+..-..+++.-+.+... ...+..+....++..+|+....
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l----------------~~~~~~i~~~~~~~e~~l~t~~ 571 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL----------------MDGKIHIELTFNDREEALDTCI 571 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh----------------chhhhhhhhhcccHHHHHHHHH
Confidence 478999999999999999999999999888775554322 2223344445667777776655
Q ss_pred HHHHc--CCHHHHHHHHHHHHh---c-CCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 235 YQAQK--GNAGAMYKIGLFYYF---G-LRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 235 ~~~~~--~~~~a~~~Lg~~y~~---~-~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
..... ..+.+...++..-.. . +.-...+...|+...+++... +-.++. .-..+.. +.+
T Consensus 572 ~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-----------~a~~~~--~~~se~~---Lp~ 635 (799)
T KOG4162|consen 572 HKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-----------VASQLK--SAGSELK---LPS 635 (799)
T ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-----------HHhhhh--hcccccc---cCc
Confidence 53322 111122222211100 0 001122445555555544321 000000 0000000 000
Q ss_pred HH-HcCC-------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 309 AA-RQQL-------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKY 378 (525)
Q Consensus 309 a~-~~~~-------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~ 378 (525)
.- ..+. ...+...+..+.. .++.++|..++.++.... .+..++..|.++.. .+...+|...
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~-----~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~EA~~a 706 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLL-----SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEEAKEA 706 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHHHHHH
Confidence 00 0000 1222333444433 235666666666665543 45566677777777 7777777777
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHH--HHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 379 FLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATA--LYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 379 ~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~--~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
|..|+.. +++.++..+|.++.. .|+..-|.. .+..+++.++ .++|+.+|.++...|+.+.|..+|+-|++
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle----~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLE----LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHH----hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 7766544 567777777777765 334444444 7777777763 66777777777777777777777777766
Q ss_pred c
Q 009801 453 L 453 (525)
Q Consensus 453 ~ 453 (525)
.
T Consensus 783 L 783 (799)
T KOG4162|consen 783 L 783 (799)
T ss_pred h
Confidence 5
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.8e-08 Score=97.31 Aligned_cols=367 Identities=16% Similarity=0.057 Sum_probs=232.6
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+|+++|+.+|..++ +|+|.--+.+-...|.. .+++.+|++--.+..+. .-+.++..+|..+...|+|++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~----~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYAS----LGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHH----HhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 788999999999976 66666556666667777 88999999988888775 46789999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCch-----hhhhcccch-------hhhhHhhhccCCcHHHHHHHHHH-----HHcCCHH
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIE-----PIRIHNGAE-------ENKGALRKSRGEDDEAFQILEYQ-----AQKGNAG 243 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~A~~~~~~~-----~~~~~~~ 243 (525)
..|.+-++.++.+...-.+..-.. .......+. ..+.........+.+-++.+++. ...+++.
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999999888766532211100000 000000000 00111111222222222222221 1113444
Q ss_pred HHHHHHHHHHhcC-----CCC-----ccCHH----HHHHHH----HHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 009801 244 AMYKIGLFYYFGL-----RGL-----RRDRT----KALMWF----SKAADKGEPQSMEFLGEIYARGAGVERNYTKALEW 305 (525)
Q Consensus 244 a~~~Lg~~y~~~~-----~~~-----~~~~~----~A~~~~----~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~ 305 (525)
.+..+|.+.-... .+. ..++. +..... +..-...-+...-.||..... ..++..|++.
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk----kk~f~~a~q~ 246 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK----KKDFETAIQH 246 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH----hhhHHHHHHH
Confidence 4555554432110 000 00000 000000 000000112345678888887 8899999999
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 306 LTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---------AGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 306 ~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~---------~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
|.++++.. +..-..+.+.+|+. .+.+.+.+.....+++.+- +.+...+|..|.. .++++.|
T Consensus 247 y~~a~el~~~it~~~n~aA~~~e-----~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k----~~~~~~a 317 (539)
T KOG0548|consen 247 YAKALELATDITYLNNIAAVYLE-----RGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK----REDYEGA 317 (539)
T ss_pred HHHHHhHhhhhHHHHHHHHHHHh-----ccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh----HHhHHHH
Confidence 99998876 44556777778865 5678888888888877641 3344456777777 8999999
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 376 CKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 376 ~~~~~~a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
+.+|++++.. ..++ +... .+..++++.-.......++.- ....-|..++..|+|.+|+..|.+|+.
T Consensus 318 i~~~~kaLte~Rt~~-------~ls~----lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPD-------LLSK----LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHhhhhcCHH-------HHHH----HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 9999998765 3322 2222 455666666666666666533 333558899999999999999999998
Q ss_pred c--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 453 L--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 453 ~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
. .++..+.|.|.+|-. .+.+..|+.--+++++.+ ...++++=|.+++
T Consensus 387 r~P~Da~lYsNRAac~~k----------------L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLK----------------LGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred cCCchhHHHHHHHHHHHH----------------HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 7 588899999999988 556788888888888876 3556666555544
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.25 E-value=6.5e-08 Score=95.43 Aligned_cols=354 Identities=14% Similarity=0.073 Sum_probs=222.1
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE- 156 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~- 156 (525)
..+.+++++-..|....- .++.++|..+...+. ++...-+|+.+|.++.. .+++++|+++|+.|+.
T Consensus 36 k~~eHgeslAmkGL~L~~-------lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~----dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNC-------LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS----DKKYDEAIKCYRNALKI 104 (700)
T ss_pred hCCccchhHHhccchhhc-------ccchHHHHHHHHHHhccCcccchhHHHHHHHHhh----hhhHHHHHHHHHHHHhc
Confidence 456778888888886654 788999999998865 66788999999999999 9999999999999976
Q ss_pred -CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHH
Q 009801 157 -GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 157 -~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
.+|...+..|+.+-.++++++-....=.+..+..+..- ..+...+..+.-.|++..|.+.++.
T Consensus 105 ~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r----------------a~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 105 EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR----------------ASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999988887777766554431 1134455556667788888777666
Q ss_pred HHHcCC----------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 009801 236 QAQKGN----------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKAL 303 (525)
Q Consensus 236 ~~~~~~----------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~ 303 (525)
.....+ .++...-..+.... +.+++|++.+.+--.. +.-.....-|.++.. .++.++|.
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~-----g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k----l~~lEeA~ 239 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEA-----GSLQKALEHLLDNEKQIVDKLAFEETKADLLMK----LGQLEEAV 239 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH----HhhHHhHH
Confidence 533321 22223333333333 2456666665543221 222333445667777 77888888
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHH-----------------------------------HHHHHH
Q 009801 304 EWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAK-----------------------------------EYFEKA 346 (525)
Q Consensus 304 ~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~-----------------------------------~~~~~a 346 (525)
..|...+... +..-+..+-.++.. .. +.-+++ +++..-
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk----~~-d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGK----IK-DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHH----Hh-hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 8888877664 22111111111110 01 222222 233333
Q ss_pred HhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH-------Hc------------CCHHH----HHHHHHHHHcCCC
Q 009801 347 ADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA-------NA------------GHQKA----FYQLAKMFHTGVG 403 (525)
Q Consensus 347 ~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~-------~~------------~~~~a----~~~l~~~y~~g~g 403 (525)
++.|.|.....+-.+|.. .. +.- +.++.+ .. ..|.+ .+.++.-+..
T Consensus 315 l~Kg~p~vf~dl~SLyk~----p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~--- 383 (700)
T KOG1156|consen 315 LSKGVPSVFKDLRSLYKD----PE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK--- 383 (700)
T ss_pred hhcCCCchhhhhHHHHhc----hh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH---
Confidence 334445555555555544 22 111 333322 10 12333 3344445554
Q ss_pred CcCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHH--HHHHHhhhCCCccccCCC
Q 009801 404 LKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSN--AAWILDKYGEGSMCMGES 479 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~--la~~~~~~~~~~~~~~~~ 479 (525)
.++++.|..|...|++.-|. +-+..-|.++...|+.++|..|++.|.+.+.++-..| .|....+
T Consensus 384 -~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr----------- 451 (700)
T KOG1156|consen 384 -LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR----------- 451 (700)
T ss_pred -cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH-----------
Confidence 88999999999999988774 4455678889999999999999999999987775555 5544443
Q ss_pred CCCCChHhHHHHHHHHHHHHhCC
Q 009801 480 GFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.++.++|.+...+-.+.|
T Consensus 452 -----An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 -----ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred -----ccccHHHHHHHHHhhhcc
Confidence 445566666555544443
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.3e-08 Score=93.30 Aligned_cols=261 Identities=13% Similarity=0.070 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH
Q 009801 157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (525)
Q Consensus 157 ~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 236 (525)
.+|..-+..+|.++...|++++|+..|+++.-.++..... ..-.+.+....|+++.--.+....
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~----------------MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA----------------MDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh----------------HHHHHHHHHhccCHhhHHHHHHHH
Confidence 3788999999999999999999999999987665543221 223455666777776544443333
Q ss_pred --HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 237 --AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 237 --~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
+......-++.-|...+.. +++..|+.+-+|+++. .+..++..-|.++.. .++.++|+-.|+.|...
T Consensus 293 f~~~~~ta~~wfV~~~~l~~~-----K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYDE-----KKFERALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAVIAFRTAQML 363 (564)
T ss_pred Hhhhhcchhhhhhhhhhhhhh-----hhHHHHHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHHHHHHHHHhc
Confidence 3333444455555555444 5999999999999986 577899999999999 99999999999999776
Q ss_pred C--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHH-HHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 009801 313 Q--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG-VMYYKGIGVKRDVKLACKYFLVAANA-- 385 (525)
Q Consensus 313 ~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg-~~y~~g~~~~~~~~~A~~~~~~a~~~-- 385 (525)
- ..+++..|-.+|.. .+.+.+|.-.-+.+++. .++.++..+| .+.... ..-.++|..++++++..
T Consensus 364 ap~rL~~Y~GL~hsYLA-----~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d---p~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLA-----QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD---PRMREKAKKFAEKSLKINP 435 (564)
T ss_pred chhhHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC---chhHHHHHHHHHhhhccCC
Confidence 4 67888888888876 55899999988888765 6788888886 554431 66788999999999987
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-PWSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 386 ~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+...|-..++.+... .+.++.++..+++.+... +..-+..||.++...+.+++|+.+|..|+..+
T Consensus 436 ~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQV----EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccHHHHHHHHHHHHh----hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 678888889988886 899999999999998876 46677899999999999999999999999885
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.24 E-value=4.4e-09 Score=107.89 Aligned_cols=357 Identities=14% Similarity=0.009 Sum_probs=258.0
Q ss_pred CCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCH
Q 009801 69 PGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNK 144 (525)
Q Consensus 69 ~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~ 144 (525)
-..+...|-++ +++.-+.+.-.+|.+|-. ..|...|...|++|- +++++++.-.++..|.+ ..+.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd-------~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae----~~~w 542 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRD-------SDDMKRAKKCFDKAFELDATDAEAAAASADTYAE----ESTW 542 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc----cccH
Confidence 44566666666 455556677788887775 558999999999975 77888999999999998 8899
Q ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 145 GKAFLYHHFAAEGG----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 145 ~~A~~~~~~a~~~~----~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
+.|......+.+.. -......+|..|...++..+|+..|+.+...+|.+.. .+..+|..|
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n----------------~W~gLGeAY 606 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN----------------LWLGLGEAY 606 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHH----------------HHHHHHHHH
Confidence 99998876666543 2344556999999999999999999999888777643 377899999
Q ss_pred hccCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---------CCHHHHHHHHHHH
Q 009801 221 KSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---------GEPQSMEFLGEIY 289 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y 289 (525)
...|++..|++.|.++. +|.+.-+.|..+.+-... +.|++|+..+...+.. |.+.++.+++..+
T Consensus 607 ~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~-----GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~ 681 (1238)
T KOG1127|consen 607 PESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN-----GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDS 681 (1238)
T ss_pred HhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999998874 456677788888888777 4999999999887643 4566666666665
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHc-------C---CHHHHHH--------------------HHHHHH--hCCCCCccCH-
Q 009801 290 ARGAGVERNYTKALEWLTHAARQ-------Q---LYSAYNG--------------------IGYLYV--KGYGVEKKNY- 336 (525)
Q Consensus 290 ~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~--------------------lg~~~~--~g~~~~~~~~- 336 (525)
.. .+-..+|..+++++++. . +...+.. ++.+.. .+.+..+.+-
T Consensus 682 ~~----~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~ 757 (1238)
T KOG1127|consen 682 AI----TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDL 757 (1238)
T ss_pred HH----HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhH
Confidence 54 55555566666655432 1 1111111 111111 1222222121
Q ss_pred -HHHHHHHHHHHhC-CChhHHHHHHHHHHcCC----CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCH
Q 009801 337 -TKAKEYFEKAADN-EEAGGHYNLGVMYYKGI----GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNL 408 (525)
Q Consensus 337 -~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~----~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~ 408 (525)
--|.+++-..+.. .++..|++||.-|.+-. .++.+...|+..++++++. ++..-++.||.+ . ..+++
T Consensus 758 l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl--s---g~gnv 832 (1238)
T KOG1127|consen 758 LFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL--S---GIGNV 832 (1238)
T ss_pred HHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh--h---ccchh
Confidence 2344444444443 46888999999887731 2356667999999999987 677788888888 3 26899
Q ss_pred HHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Q 009801 409 HMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWIL 466 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~ 466 (525)
.-|..+|-++....| ...+.++|.++....|++-|-..+.++.........-++|..+
T Consensus 833 a~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Al 892 (1238)
T KOG1127|consen 833 ACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEAL 892 (1238)
T ss_pred hhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHH
Confidence 999999999988875 5678899999999999999999999998876666666666555
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.24 E-value=1.2e-09 Score=101.00 Aligned_cols=177 Identities=15% Similarity=0.064 Sum_probs=124.6
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCCh---HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDP---HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~---~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
..++.++.+|..++. .+++++|+..+++.. .|.++ .+++.+|.+|.. .+++++|+..|+++++.
T Consensus 31 ~~~~~~~~~g~~~~~-------~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 31 WPAEELYEEAKEALD-------SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRL 99 (235)
T ss_pred CCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Confidence 447788999999887 888999999999965 44554 678999999999 99999999999999864
Q ss_pred --CCH---HHHHHHHHHHhcc--------ccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccC
Q 009801 158 --GNI---QSKMAVAYTYLRQ--------DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG 224 (525)
Q Consensus 158 --~~~---~a~~~la~~y~~~--------~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (525)
+++ .+++.+|.++... +++++|++.|++++...+.+...
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---------------------------- 151 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA---------------------------- 151 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH----------------------------
Confidence 333 4789999999875 78999999999988764443100
Q ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHcCCCCCCCH
Q 009801 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
.+++..+.. ...........+|.+|...+ ++.+|+..|+++++.. .+.+++.+|.++.. .+++
T Consensus 152 --~~a~~~~~~-~~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~----lg~~ 219 (235)
T TIGR03302 152 --PDAKKRMDY-LRNRLAGKELYVARFYLKRG-----AYVAAINRFETVVENYPDTPATEEALARLVEAYLK----LGLK 219 (235)
T ss_pred --HHHHHHHHH-HHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH----cCCH
Confidence 111111111 01111223456777776663 7777888777777641 24677777777777 7777
Q ss_pred HHHHHHHHHHH
Q 009801 300 TKALEWLTHAA 310 (525)
Q Consensus 300 ~~A~~~~~~a~ 310 (525)
++|+.+++...
T Consensus 220 ~~A~~~~~~l~ 230 (235)
T TIGR03302 220 DLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 83
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=4.6e-08 Score=91.35 Aligned_cols=287 Identities=14% Similarity=0.032 Sum_probs=189.3
Q ss_pred HHHHHHHHhhcCChHhHHHHHHHHHHHHhcC-ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-C--CHHHHHHHH
Q 009801 92 TISKMMSAVTNGDVRVMEEATSEVESAAMEG-DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-G--NIQSKMAVA 167 (525)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~--~~~a~~~la 167 (525)
+..++..+..+-..||+.+|.+...++++-+ .+...+.+|---... .+|.+.|-.|+.++++. + ........+
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~q---rgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQ---RGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHh---cccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 3344444444445899999999999977554 465556666533321 78999999999999987 3 457778889
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc---CCHHH
Q 009801 168 YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK---GNAGA 244 (525)
Q Consensus 168 ~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~a 244 (525)
.+....+|++.|..-..++.+..+.... ...-...+|...|++++...++.+..+. +++++
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~----------------vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPE----------------VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChH----------------HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 9999999999999999888876554321 1233556677888888888888776655 23332
Q ss_pred HHHHHHHH-----HhcCCCCccCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHH
Q 009801 245 MYKIGLFY-----YFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYS 316 (525)
Q Consensus 245 ~~~Lg~~y-----~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~ 316 (525)
.-.=-..+ ... ..++.+.=..|.+..-. ..++.....++.-+.. .++.++|.++.+++++.+ ++.
T Consensus 225 ~~le~~a~~glL~q~~---~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 225 ARLEQQAWEGLLQQAR---DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHHHHHHHHHHh---ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChh
Confidence 21111111 111 00111112234443222 1456666667777777 788888888888888775 555
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQKAFYQ 393 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~ 393 (525)
.+..++.+- .+++.+=++..++.+.. ++|..+..||.++.. .+.+.+|..+++.|+.. .+...+..
T Consensus 298 L~~~~~~l~-------~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k----~~~w~kA~~~leaAl~~~~s~~~~~~ 366 (400)
T COG3071 298 LCRLIPRLR-------PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK----NKLWGKASEALEAALKLRPSASDYAE 366 (400)
T ss_pred HHHHHhhcC-------CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH----hhHHHHHHHHHHHHHhcCCChhhHHH
Confidence 333333322 33666666666666654 567777888888888 88888888888888776 56677778
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
+|..+.. .++..+|...++.++
T Consensus 367 la~~~~~----~g~~~~A~~~r~e~L 388 (400)
T COG3071 367 LADALDQ----LGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHH----cCChHHHHHHHHHHH
Confidence 8888887 788888888887776
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=4.6e-08 Score=96.55 Aligned_cols=298 Identities=9% Similarity=0.042 Sum_probs=179.8
Q ss_pred CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hc---CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHH
Q 009801 81 DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--ME---GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA 155 (525)
Q Consensus 81 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~---~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~ 155 (525)
+|+.+.++..+|..+.. .++.+.|...+.++. .+ +..+..+..|.++.. .+++++|...+++++
T Consensus 2 dp~~~~a~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~----~g~~~~A~~~~~~~l 70 (355)
T cd05804 2 DPDFALGHAAAALLLLL-------GGERPAAAAKAAAAAQALAARATERERAHVEALSAWI----AGDLPKALALLEQLL 70 (355)
T ss_pred CCccHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 67778888899987776 445666666665532 22 335667777888877 899999999999998
Q ss_pred cC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHH
Q 009801 156 EG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQIL 233 (525)
Q Consensus 156 ~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 233 (525)
+. ++..+... +..+...+++..+.....+++...
T Consensus 71 ~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~------------------------------------------- 106 (355)
T cd05804 71 DDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW------------------------------------------- 106 (355)
T ss_pred HHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-------------------------------------------
Confidence 64 45555553 444444444433333333322110
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 234 EYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 234 ~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
....+....+...+|.++...| ++++|+..++++++. +++.++..+|.++.. .+++++|+.+++++++
T Consensus 107 -~~~~~~~~~~~~~~a~~~~~~G-----~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 107 -APENPDYWYLLGMLAFGLEEAG-----QYDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRD 176 (355)
T ss_pred -CcCCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhh
Confidence 0012344556667777777663 888888888888765 556777788888887 8888888888888876
Q ss_pred cC----C--HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC-hhHHH---HHHHHHHcCCCCcCCHHHHHHH--H
Q 009801 312 QQ----L--YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE-AGGHY---NLGVMYYKGIGVKRDVKLACKY--F 379 (525)
Q Consensus 312 ~~----~--~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~-~~a~~---~lg~~y~~g~~~~~~~~~A~~~--~ 379 (525)
.. . ...+..++.++.. .|++++|+.+|++++.... +.... ..+..+..+.- .+....+..| .
T Consensus 177 ~~~~~~~~~~~~~~~la~~~~~-----~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~~~~w~~~ 250 (355)
T cd05804 177 TWDCSSMLRGHNWWHLALFYLE-----RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL-AGHVDVGDRWEDL 250 (355)
T ss_pred ccCCCcchhHHHHHHHHHHHHH-----CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh-cCCCChHHHHHHH
Confidence 52 1 1234567777765 5688888888888764422 11111 11111111100 2222222222 1
Q ss_pred -HHHHH--cCC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCHHHH
Q 009801 380 -LVAAN--AGH--QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----------PWSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 380 -~~a~~--~~~--~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~l~~~~~~~g~~~~A 443 (525)
..... .+. .......+.++.. .++.++|...++...... ........+++++..|++++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAG----AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 11111 111 1111234444444 678888888887765421 133445678889999999999
Q ss_pred HHHHHHHHHc
Q 009801 444 FLLYSRMAEL 453 (525)
Q Consensus 444 ~~~~~~a~~~ 453 (525)
+..+..++..
T Consensus 327 ~~~L~~al~~ 336 (355)
T cd05804 327 LELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 85
>PLN02789 farnesyltranstransferase
Probab=99.20 E-value=3.2e-08 Score=94.33 Aligned_cols=203 Identities=13% Similarity=0.032 Sum_probs=159.1
Q ss_pred ccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC
Q 009801 222 SRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER 297 (525)
Q Consensus 222 ~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~ 297 (525)
..++.++|+..+.+++. |.+..++...|.++...+ .++++++.++.+++.. .+..++.+.+.++.. .+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~----~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~----l~ 120 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD----ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK----LG 120 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc----hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH----cC
Confidence 45678899999999865 478889999999987663 3689999999999875 677899999988876 55
Q ss_pred C--HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcC---CCC
Q 009801 298 N--YTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKG---IGV 368 (525)
Q Consensus 298 ~--~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g---~~~ 368 (525)
+ .++++.+++++++.+ +..++...+.++.. .+++++++.++.++++. .+..+++..+.+.... .+.
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-----l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-----LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 4 377899999998875 88999999999986 45899999999999876 5888999999888662 111
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLK 437 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~ 437 (525)
....++++.+..+++.. .+..++++++.++........+..+|+..+.+++..+ ...++..|+.++...
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 22346788888898876 6888999999998762222345667889998888765 356777888888753
No 86
>PLN02789 farnesyltranstransferase
Probab=99.17 E-value=4e-08 Score=93.67 Aligned_cols=169 Identities=12% Similarity=0.025 Sum_probs=120.7
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHH
Q 009801 227 DEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKA 302 (525)
Q Consensus 227 ~~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A 302 (525)
++++.++.+++ ++.+..+++..+.+....+ ....++++.+++++++. .+..++...+.++.. .++++++
T Consensus 89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~---~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~ee 161 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG---PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDE 161 (320)
T ss_pred HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC---chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHH
Confidence 44444444443 3466777888887776552 01236788888888875 678899999999988 8889999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhCC--CCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 303 LEWLTHAARQQ--LYSAYNGIGYLYVKGY--GVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLAC 376 (525)
Q Consensus 303 ~~~~~~a~~~~--~~~a~~~lg~~~~~g~--~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~ 376 (525)
+.++.++++.+ +..+++..+.+..... +......++++.+..+++.. ++..+++.++.++........+..+|+
T Consensus 162 L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 162 LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 99999998864 7889999888875420 10111346788888888865 688899999999877322235566788
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 009801 377 KYFLVAANA--GHQKAFYQLAKMFHTGV 402 (525)
Q Consensus 377 ~~~~~a~~~--~~~~a~~~l~~~y~~g~ 402 (525)
..+.++.+. .++.++..|+.+|..+.
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhhh
Confidence 888887765 57788888999988643
No 87
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.14 E-value=7.1e-07 Score=88.26 Aligned_cols=322 Identities=12% Similarity=-0.019 Sum_probs=233.9
Q ss_pred hHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHH
Q 009801 107 VMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKL 182 (525)
Q Consensus 107 ~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~ 182 (525)
-++-|+..|..+. .+.....+...+..-.. -+..+.-..++++|+.. ....-++..+..+...||...|..+
T Consensus 531 ~~~carAVya~alqvfp~k~slWlra~~~ek~----hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 531 AIECARAVYAHALQVFPCKKSLWLRAAMFEKS----HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 3455555565544 33344444444444333 45677777888888875 3445566777888888999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCcc
Q 009801 183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRR 261 (525)
Q Consensus 183 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~ 261 (525)
+.++.+..+.+. .++.-...+......++.|..+|.++-.. +....++.-+.+-+.. +
T Consensus 607 l~~af~~~pnse----------------eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~l-----d 665 (913)
T KOG0495|consen 607 LDQAFEANPNSE----------------EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYL-----D 665 (913)
T ss_pred HHHHHHhCCCcH----------------HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHh-----h
Confidence 999987655542 23444555667788899999999998554 7778888877777666 4
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHH
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYT 337 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~ 337 (525)
+.++|+.+++.+++. .....++.+|+++.+ +++.+.|...|.+..+. +.+..+..|+.+-.. .++..
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-----~~~~~ 736 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-----DGQLV 736 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-----hcchh
Confidence 999999999999986 678899999999999 99999999999998876 367778888888776 45888
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHH--HHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 338 KAKEYFEKAADNEEAGGHYNLGVM--YYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY 415 (525)
Q Consensus 338 ~A~~~~~~a~~~~~~~a~~~lg~~--y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~ 415 (525)
+|...+.++.-.+...+.+.|..+ -.+ .++.+.|.....+|++.=......+...+...+.+ ++-.+++..+
T Consensus 737 rAR~ildrarlkNPk~~~lwle~Ir~ElR----~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~--~rkTks~DAL 810 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNALLWLESIRMELR----AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP--QRKTKSIDAL 810 (913)
T ss_pred hHHHHHHHHHhcCCCcchhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc--ccchHHHHHH
Confidence 999999999877655555555544 455 78999999999999988555556666666655332 3334444444
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhC
Q 009801 416 KLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYG 470 (525)
Q Consensus 416 ~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~ 470 (525)
++. .+++..+...|..++...++++|+.||++|+.. ++.+++.++-..+..+|
T Consensus 811 kkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 811 KKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 332 246677788899999999999999999999976 46667766656655544
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.14 E-value=6.4e-09 Score=96.08 Aligned_cols=180 Identities=16% Similarity=0.075 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP---QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
...++.++.+|..+ ...+++++|+..|+++++. +++ .+++.+|.+|.. .+++++|+..|+++++..
T Consensus 30 ~~~~~~~~~~g~~~-----~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 30 EWPAEELYEEAKEA-----LDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRLH 100 (235)
T ss_pred cCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHC
Confidence 45677888888877 3457888888888888765 232 577888888888 888888888888887653
Q ss_pred --C---HHHHHHHHHHHHhCCC---CCccCHHHHHHHHHHHHhCC--ChhHH---HHHHHHHHcCCCCcCCHHHHHHHHH
Q 009801 314 --L---YSAYNGIGYLYVKGYG---VEKKNYTKAKEYFEKAADNE--EAGGH---YNLGVMYYKGIGVKRDVKLACKYFL 380 (525)
Q Consensus 314 --~---~~a~~~lg~~~~~g~~---~~~~~~~~A~~~~~~a~~~~--~~~a~---~~lg~~y~~g~~~~~~~~~A~~~~~ 380 (525)
+ ..+++.+|.++..... ...+++++|++.|+++++.. +..+. ..++..+..
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---------------- 164 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---------------- 164 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH----------------
Confidence 2 2367888888765211 01246778888888877652 22222 111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 381 VAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 381 ~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.......+|.+|.. .+++.+|+..|+++++..+ +.+++.+|.++...|++++|..+++.....
T Consensus 165 ------~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 ------LAGKELYVARFYLK----RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ------HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01223467888887 8999999999999998743 478999999999999999999988776543
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.08 E-value=5.9e-09 Score=87.71 Aligned_cols=120 Identities=13% Similarity=0.027 Sum_probs=98.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 340 KEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 340 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
..+++++++.+ |..++.+|..+.. .+++++|+.+|++++.. .+..++..+|.++.. .+++++|+.+|++
T Consensus 13 ~~~~~~al~~~-p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSVD-PETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----LKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHcC-HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----HhhHHHHHHHHHH
Confidence 45777777764 4447778888888 89999999999998877 678888999999887 8999999999999
Q ss_pred HHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 418 VAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 418 a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
+++.+| +.+++++|.++...|++++|+..|+++++. +++..+.+.+.+...
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 998864 778889999999999999999999999876 567777777766543
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.07 E-value=5.4e-09 Score=87.93 Aligned_cols=119 Identities=10% Similarity=0.036 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 375 A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
-..+++++++.+.. ..+.+|..+.. .+++++|+.+|++++..+| ..++..+|.++...|++++|+..|+++++
T Consensus 12 ~~~~~~~al~~~p~-~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPE-TVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHH-HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34678888887544 46778999987 9999999999999999975 77889999999999999999999999998
Q ss_pred c--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 453 L--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 453 ~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
. +++.+++++|.++.. .+++++|+..|++|++.. ++..+...|.+-
T Consensus 87 l~p~~~~a~~~lg~~l~~----------------~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKM----------------MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 6 689999999999998 678999999999999864 677777777654
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.06 E-value=4.5e-07 Score=101.12 Aligned_cols=349 Identities=12% Similarity=-0.017 Sum_probs=233.7
Q ss_pred hHhHHHHHHHHHHHHhcCC-hHHHHHHHHhhhcCCCccCCHHHHHHHHHHH---HcCCCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGD-PHARSVLGFLYGMGMMRERNKGKAFLYHHFA---AEGGNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a---~~~~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+++.+|+.++..+.+... .......|..... .++...+..++... ...+++......+.++...+++++|.
T Consensus 354 ~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~----~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 354 QGFPSEAIHHALAAGDAQLLRDILLQHGWSLFN----QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHh----cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 4456666665554322211 1222333443333 55677777776553 22355666677888888999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc---CC----HHHHHHHHHHHH
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK---GN----AGAMYKIGLFYY 253 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~----~~a~~~Lg~~y~ 253 (525)
.++.++.+...... . ...+ ..........+.++...|++++|...++++... ++ ..+...+|.++.
T Consensus 430 ~~l~~a~~~~~~~~-~-~~~~-----~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 430 TLLARAEQELKDRN-I-ELDG-----TLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred HHHHHHHHhccccC-c-ccch-----hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 99988765421100 0 0000 000111223566778899999999999998652 22 235677888887
Q ss_pred hcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC----------CH
Q 009801 254 FGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----------LY 315 (525)
Q Consensus 254 ~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----------~~ 315 (525)
.. +++++|..++++++.. +. ..+...+|.++.. .|++++|..+++++++.. ..
T Consensus 503 ~~-----G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 503 CK-----GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA----QGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred Hc-----CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 66 4999999999998854 22 2466788999998 999999999999987641 12
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----C---ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----E---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--- 385 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 385 (525)
.....+|.++.. .|++++|...+++++.. + ...++..+|.++.. .+++++|...+.++...
T Consensus 574 ~~~~~la~~~~~-----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 574 FLLRIRAQLLWE-----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred HHHHHHHHHHHH-----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhc
Confidence 234566777765 57999999999998764 1 23456678899998 99999999999988654
Q ss_pred -CC-HHHHH---HHH-HHHHcCCCCcCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 386 -GH-QKAFY---QLA-KMFHTGVGLKKNLHMATALYKLVAERGPW------SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 386 -~~-~~a~~---~l~-~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+. ..... .+. ..+.. .++.+.|..++......... .....++.++...|++++|...+++++..
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQM----TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHH----CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 11111 111 22222 67899999998776543211 12357888999999999999999999864
Q ss_pred ----C----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 454 ----G----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 454 ----~----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+ ...++..+|.++.. .++.++|..++++|++..
T Consensus 721 ~~~~g~~~~~a~~~~~la~a~~~----------------~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQ----------------QGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHhCchHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHh
Confidence 2 23477788888887 667899999999998754
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=9.3e-07 Score=89.37 Aligned_cols=293 Identities=14% Similarity=0.055 Sum_probs=187.1
Q ss_pred hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCC
Q 009801 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP 201 (525)
Q Consensus 124 ~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~ 201 (525)
.+.+.....++.. .|++++|++++++.... +....+-..|.++...|++++|...|+.+++++|.+
T Consensus 4 SE~lLY~~~il~e----~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-------- 71 (517)
T PF12569_consen 4 SELLLYKNSILEE----AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-------- 71 (517)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--------
Confidence 4556666667776 78888888888776553 566777788888888888888888888888765543
Q ss_pred CchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-CHH
Q 009801 202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-EPQ 280 (525)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 280 (525)
...+..|..+..-.......+.+.-...|++....- .+.
T Consensus 72 ----------------------------------------~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~ 111 (517)
T PF12569_consen 72 ----------------------------------------YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD 111 (517)
T ss_pred ----------------------------------------HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc
Confidence 233333333321110011124555566666544331 112
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----------
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----------- 349 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----------- 349 (525)
+...+...+..| ..=...+..|+...+..|.|....+|-.+|.. ..+..-....+......
T Consensus 112 ~~~rl~L~~~~g---~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d-----~~K~~~i~~l~~~~~~~l~~~~~~~~~~ 183 (517)
T PF12569_consen 112 APRRLPLDFLEG---DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD-----PEKAAIIESLVEEYVNSLESNGSFSNGD 183 (517)
T ss_pred chhHhhcccCCH---HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC-----hhHHHHHHHHHHHHHHhhcccCCCCCcc
Confidence 222333333322 11233456667777777777777777777743 11211112222221111
Q ss_pred ----CCh----hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 350 ----EEA----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 350 ----~~~----~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
..| .+++.|+..|.. .+++++|+.+.++|++. ..++.+..-|.++.+ .|++++|.+++..|-
T Consensus 184 ~~~~~~p~~~lw~~~~lAqhyd~----~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh----~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 184 DEEKEPPSTLLWTLYFLAQHYDY----LGDYEKALEYIDKAIEHTPTLVELYMTKARILKH----AGDLKEAAEAMDEAR 255 (517)
T ss_pred ccccCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHH
Confidence 112 255788999999 99999999999999988 457888888999998 999999999999999
Q ss_pred HcCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCh-HH--------HH--HHHHHHHhhhCCCccccCCCCCCCChH
Q 009801 420 ERGPWSSLS--RWALESYLKGDVGKAFLLYSRMAELGY-EV--------AQ--SNAAWILDKYGEGSMCMGESGFCTDAE 486 (525)
Q Consensus 420 ~~~~~~a~~--~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~--------a~--~~la~~~~~~~~~~~~~~~~~~~~~~~ 486 (525)
.++..+=+. ..+..+.+.|+.++|..........+. +. .| ...|..|.+ .+
T Consensus 256 ~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r----------------~~ 319 (517)
T PF12569_consen 256 ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR----------------QG 319 (517)
T ss_pred hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH----------------Hh
Confidence 998655443 456667889999999999988876541 11 22 234555555 66
Q ss_pred hHHHHHHHHHHHHh
Q 009801 487 RHQCAHSLWWQASE 500 (525)
Q Consensus 487 ~~~~A~~~~~~a~~ 500 (525)
++..|++.|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 77788887776554
No 93
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.00 E-value=4.6e-08 Score=103.23 Aligned_cols=216 Identities=11% Similarity=0.006 Sum_probs=145.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLY 315 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~ 315 (525)
++.+..++..|...| ...+++++|+...+.+++. +....++.+|.++.. .+++.++.-.
T Consensus 27 ~p~n~~a~~~Li~~~-----~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q----~~~~~~~~lv---------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAY-----KSENLTDEAKDICEEHLKEHKKSISALYISGILSLS----RRPLNDSNLL---------- 87 (906)
T ss_pred CcchHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh----hcchhhhhhh----------
Confidence 445667777777666 3456777777777766654 455677777777666 5553333221
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFY 392 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 392 (525)
.++..... ..++.-...++.+..+. ++..|++.||.+|.. .++.++|...|+++++. .++.+++
T Consensus 88 ----~~l~~~~~-----~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk----~g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 88 ----NLIDSFSQ-----NLKWAIVEHICDKILLYGENKLALRTLAEAYAK----LNENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ----hhhhhccc-----ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCcccHHHHH
Confidence 22222211 22443333333344444 355699999999999 99999999999999987 6899999
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh-----------------
Q 009801 393 QLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGY----------------- 455 (525)
Q Consensus 393 ~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------- 455 (525)
++|..|.. . |+++|+.++.+|+.. ++..+++.++..+.++.++...
T Consensus 155 n~AY~~ae----~-dL~KA~~m~~KAV~~------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 155 KLATSYEE----E-DKEKAITYLKKAIYR------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHH----h-hHHHHHHHHHHHHHH------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 99999997 6 999999999999986 5555566666666666655421
Q ss_pred --HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 456 --EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 456 --~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
..+.--+=-++..| ...+++++++.+++++++.. |..+.+.|..||.
T Consensus 218 ~~~~~~~~~~~l~~~y-------------~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPY-------------KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHH-------------hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11111111111221 22778999999999999865 7889999999998
No 94
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.96 E-value=5.5e-08 Score=92.06 Aligned_cols=209 Identities=22% Similarity=0.236 Sum_probs=130.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhh
Q 009801 142 RNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRK 221 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (525)
.|++.|...|++| |..|...+++++|.+.|.++++....
T Consensus 29 ~~~e~Aa~~y~~A------------a~~fk~~~~~~~A~~ay~kAa~~~~~----------------------------- 67 (282)
T PF14938_consen 29 PDYEEAADLYEKA------------ANCFKLAKDWEKAAEAYEKAADCYEK----------------------------- 67 (282)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHTT-CHHHHHHHHHHHHHHHH-----------------------------
T ss_pred CCHHHHHHHHHHH------------HHHHHHHhccchhHHHHHHHHHHHHH-----------------------------
Confidence 4778888888877 45677778888888888877654221
Q ss_pred ccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCC
Q 009801 222 SRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGA 293 (525)
Q Consensus 222 ~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~ 293 (525)
.++...| ..++...+.+|... ++++|+.+|++|++. |. +.++..+|.+|..
T Consensus 68 -~~~~~~A------------a~~~~~Aa~~~k~~------~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~-- 126 (282)
T PF14938_consen 68 -LGDKFEA------------AKAYEEAANCYKKG------DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE-- 126 (282)
T ss_dssp -TT-HHHH------------HHHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC--
T ss_pred -cCCHHHH------------HHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--
Confidence 1222222 34556667777655 888999999998864 44 4577888888887
Q ss_pred CCC-CCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--C-------hhHH
Q 009801 294 GVE-RNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E-------AGGH 355 (525)
Q Consensus 294 ~~~-~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~-------~~a~ 355 (525)
. +++++|+++|++|++. + ...+...++.++.. .+++++|++.|++.+... + ...+
T Consensus 127 --~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 127 --QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp --TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred --HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 6 7899999999998764 2 23456677777765 458888888888876541 1 1234
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CH--HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQ--KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS 425 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~--~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 425 (525)
+..+.+++. .+|...|...+++..... .. .....|-..+..| ....+++|+.-|.....++++.
T Consensus 200 l~a~l~~L~----~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~--D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 200 LKAILCHLA----MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG--DVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHHHH----TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT---CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC--CHHHHHHHHHHHcccCccHHHH
Confidence 566777777 778888877777766442 22 2333334444432 3556777777776665555543
No 95
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.6e-08 Score=89.73 Aligned_cols=173 Identities=18% Similarity=0.068 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCC--H---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCH
Q 009801 264 TKALMWFSKAADKGE--P---QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNY 336 (525)
Q Consensus 264 ~~A~~~~~~a~~~~~--~---~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~ 336 (525)
.+|+..+++.+.... | .+...=+.++.. .+++++|...--..++.+ +.++++.-|.++.. ..+.
T Consensus 149 anal~~~~~~~~s~s~~pac~~a~~lka~cl~~----~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-----~~~~ 219 (486)
T KOG0550|consen 149 ANALPTLEKLAPSHSREPACFKAKLLKAECLAF----LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY-----NDNA 219 (486)
T ss_pred hhhhhhhhcccccccCCchhhHHHHhhhhhhhh----cccchhHHHHHHHHHhcccchhHHHHhccccccc-----ccch
Confidence 344555555544322 2 233444556665 889999988777776665 77888888888765 4589
Q ss_pred HHHHHHHHHHHhCCCh----h----------HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHH
Q 009801 337 TKAKEYFEKAADNEEA----G----------GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG------HQKAFYQLAK 396 (525)
Q Consensus 337 ~~A~~~~~~a~~~~~~----~----------a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~ 396 (525)
++|+..|++++..+.. . .+-.-|.-... .+++.+|.+.|..++..+ ++..+.+.+.
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 9999999999877421 1 11223444455 777888888888887663 3344555555
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+... .++..+|+.-...|+.+++ ..++...|..+..++++++|++.|++|.+.
T Consensus 296 v~~r----Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 296 VNIR----LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhcc----cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5554 7778888888888887774 567777777888888888888888888766
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.96 E-value=1.3e-07 Score=99.85 Aligned_cols=213 Identities=15% Similarity=0.074 Sum_probs=158.1
Q ss_pred hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc
Q 009801 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (525)
Q Consensus 120 ~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~ 197 (525)
++++..++..|...|.. .+++++|+...+.+++ ++....++.+|.++.+.++++++.-. .++..
T Consensus 27 ~p~n~~a~~~Li~~~~~----~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-------- 92 (906)
T PRK14720 27 SLSKFKELDDLIDAYKS----ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-------- 92 (906)
T ss_pred CcchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--------
Confidence 67788999999999977 7899999999997776 46788999999999998888777655 33332
Q ss_pred CCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH-HHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh
Q 009801 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ-AQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (525)
.....++ .+++++-.. .+. .+..|++.||.+|.+. ++.++|+..|+++++
T Consensus 93 ----------------------~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~-----g~~~ka~~~yer~L~ 144 (906)
T PRK14720 93 ----------------------FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKL-----NENKKLKGVWERLVK 144 (906)
T ss_pred ----------------------cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHc-----CChHHHHHHHHHHHh
Confidence 1122233 444444433 232 5667999999999887 499999999999998
Q ss_pred c--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC---
Q 009801 276 K--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--- 350 (525)
Q Consensus 276 ~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--- 350 (525)
. .++.++.++|..|.. . |.++|+.++.+|+.. +.. .+++.++..+.++.+..+
T Consensus 145 ~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~~------------~i~-----~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 145 ADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIYR------------FIK-----KKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred cCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHH------------HHh-----hhcchHHHHHHHHHHhcCccc
Confidence 6 688999999999998 7 999999999999876 111 125555555555555432
Q ss_pred -------------------ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 009801 351 -------------------EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHT 400 (525)
Q Consensus 351 -------------------~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~ 400 (525)
-...+.-|=..|.. .+++++++.+++++++. .+..+...++.+|..
T Consensus 203 ~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~----~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 203 FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA----LEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred chHHHHHHHHHHhhhccchhHHHHHHHHHHHhh----hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 12333444567777 88999999999999987 577788888888864
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.94 E-value=2.7e-08 Score=88.44 Aligned_cols=114 Identities=12% Similarity=0.150 Sum_probs=96.3
Q ss_pred cCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH-HcCCCCcCC-
Q 009801 334 KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMF-HTGVGLKKN- 407 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y-~~g~g~~~~- 407 (525)
++.++++..++++++. ++++++..||.+|.. .+++++|+..|+++++. +++..+..+|.++ .. .++
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~----~g~~ 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQ----AGQH 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCC
Confidence 3778888888888866 688899999999999 99999999999999887 6788888888864 43 344
Q ss_pred -HHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh
Q 009801 408 -LHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 408 -~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 455 (525)
.++|...++++++.++ ..+++.+|..++..|++++|+.+++++++..+
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5899999999998874 67888999999999999999999999988743
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.91 E-value=3.2e-08 Score=87.92 Aligned_cols=115 Identities=11% Similarity=0.031 Sum_probs=102.8
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHH-HhcCC--HH
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALES-YLKGD--VG 441 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~-~~~g~--~~ 441 (525)
.++.++++..++++++. ++.+++..||.+|.. .+++++|+..|++++...+ +..+..+|.++ ...|+ ++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 67789999999999877 799999999999998 9999999999999999974 77888899875 67777 59
Q ss_pred HHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCC
Q 009801 442 KAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503 (525)
Q Consensus 442 ~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 503 (525)
+|...++++++. +++.+++++|..+.. .+++++|+.+|+++++...
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~----------------~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFM----------------QADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhhCC
Confidence 999999999987 589999999999998 7789999999999998663
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=1.3e-06 Score=97.50 Aligned_cols=289 Identities=9% Similarity=0.011 Sum_probs=198.0
Q ss_pred HHHHHhhhcCCCccCCHHHHHHHHHHHHcC----C-------CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhc
Q 009801 128 SVLGFLYGMGMMRERNKGKAFLYHHFAAEG----G-------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196 (525)
Q Consensus 128 ~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~-------~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~ 196 (525)
...+.++.. .+++.+|..++..+.+. + .......++.++...+++++|..+++++.+..+....
T Consensus 413 ~~~a~~~~~----~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~- 487 (903)
T PRK04841 413 LLQAWLAQS----QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY- 487 (903)
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH-
Confidence 445555555 66888888888876431 1 1345556788888889999999998888764221100
Q ss_pred cCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhcCCCCccCHHHHHH
Q 009801 197 SKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK----GN----AGAMYKIGLFYYFGLRGLRRDRTKALM 268 (525)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~----~~a~~~Lg~~y~~~~~~~~~~~~~A~~ 268 (525)
... .......+.++...|++++|...++++... +. ..+...+|.++...| +++.|..
T Consensus 488 -----~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G-----~~~~A~~ 552 (903)
T PRK04841 488 -----YSR-----IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG-----FLQAAYE 552 (903)
T ss_pred -----HHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC-----CHHHHHH
Confidence 000 001235667777889999998888887532 22 346677888888774 9999999
Q ss_pred HHHHHHhc----CC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCC
Q 009801 269 WFSKAADK----GE------PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGV 331 (525)
Q Consensus 269 ~~~~a~~~----~~------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~ 331 (525)
++++++.. +. ......+|.++.. .|++++|...+++++... ...++..+|.++..
T Consensus 553 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~---- 624 (903)
T PRK04841 553 TQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA---- 624 (903)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----
Confidence 99998764 11 2234567888888 899999999999987641 24455667777765
Q ss_pred CccCHHHHHHHHHHHHhC----CCh-hHHH---H-HHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CH----HHHHHHHH
Q 009801 332 EKKNYTKAKEYFEKAADN----EEA-GGHY---N-LGVMYYKGIGVKRDVKLACKYFLVAANAG--HQ----KAFYQLAK 396 (525)
Q Consensus 332 ~~~~~~~A~~~~~~a~~~----~~~-~a~~---~-lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~----~a~~~l~~ 396 (525)
.|++++|...+.++... +.. .... . ....+.. .++.+.|..++....... .. .....++.
T Consensus 625 -~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 625 -RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM----TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred -cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH----CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 56999999999988653 111 1111 1 1233444 678888888876654321 11 12346777
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++.. .+++++|+..+++++... . ..++..+|.++...|+.++|...+.+|++.
T Consensus 700 ~~~~----~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQIL----LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7776 889999999999998652 1 346778899999999999999999999875
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.2e-06 Score=88.73 Aligned_cols=185 Identities=22% Similarity=0.254 Sum_probs=130.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCc
Q 009801 147 AFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226 (525)
Q Consensus 147 A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (525)
....+++|.+.++ +--...|.+-...|..++|+.+|++....+ -+..+|+..|.+
T Consensus 788 gaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D------------------------LlNKlyQs~g~w 842 (1416)
T KOG3617|consen 788 GARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD------------------------LLNKLYQSQGMW 842 (1416)
T ss_pred hHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH------------------------HHHHHHHhcccH
Confidence 3445667766553 344456777778899999999999885532 355678899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh----------------------cCCHHHHHH
Q 009801 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----------------------KGEPQSMEF 284 (525)
Q Consensus 227 ~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~ 284 (525)
++|+++-+.--...--..+++.+..+... +|.+.|+++|+|+-. ..++..+..
T Consensus 843 ~eA~eiAE~~DRiHLr~Tyy~yA~~Lear-----~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W 917 (1416)
T KOG3617|consen 843 SEAFEIAETKDRIHLRNTYYNYAKYLEAR-----RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW 917 (1416)
T ss_pred HHHHHHHhhccceehhhhHHHHHHHHHhh-----ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH
Confidence 99998866543334456788888877666 489999999999621 134566667
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHc
Q 009801 285 LGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYK 364 (525)
Q Consensus 285 Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 364 (525)
.|..... .|+.+.|+.+|..|-+. +.+-.+.=. +|+.++|-.. |-+.++-.|++.||..|.+
T Consensus 918 WgqYlES----~GemdaAl~~Y~~A~D~------fs~VrI~C~-----qGk~~kAa~i---A~esgd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 918 WGQYLES----VGEMDAALSFYSSAKDY------FSMVRIKCI-----QGKTDKAARI---AEESGDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHhc----ccchHHHHHHHHHhhhh------hhheeeEee-----ccCchHHHHH---HHhcccHHHHHHHHHHhhh
Confidence 7777776 88888888888876432 222222211 3577777644 3346888899999999999
Q ss_pred CCCCcCCHHHHHHHHHHHH
Q 009801 365 GIGVKRDVKLACKYFLVAA 383 (525)
Q Consensus 365 g~~~~~~~~~A~~~~~~a~ 383 (525)
.++..+|+.+|.+|-
T Consensus 980 ----~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 980 ----DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hHHHHHHHHHHHHHH
Confidence 999999999998764
No 101
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.90 E-value=1.8e-05 Score=78.66 Aligned_cols=354 Identities=12% Similarity=0.076 Sum_probs=222.6
Q ss_pred ccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--CHHH
Q 009801 87 GSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG--NIQS 162 (525)
Q Consensus 87 a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~a 162 (525)
++|..+.-.+. .+.|.+.++..++.. .+.+++++...|..... .++.++|..+-+.++..+ ..-.
T Consensus 9 ~lF~~~lk~yE-------~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~----lg~~~ea~~~vr~glr~d~~S~vC 77 (700)
T KOG1156|consen 9 ALFRRALKCYE-------TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNC----LGKKEEAYELVRLGLRNDLKSHVC 77 (700)
T ss_pred HHHHHHHHHHH-------HHHHHhHHHHHHHHHHhCCccchhHHhccchhhc----ccchHHHHHHHHHHhccCcccchh
Confidence 45555555554 778999999888854 56788999999988776 889999999999998753 5567
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH--HHcC
Q 009801 163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ--AQKG 240 (525)
Q Consensus 163 ~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--~~~~ 240 (525)
+..+|.++...++|++|+++|+.++..++++... ...+..+..+.++++-....-.+. ..++
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qi----------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQI----------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHH----------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 8899999999999999999999999887766432 444555666667776665554444 3446
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE----------PQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~----------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
.-..+..++..+.-. +++..|....+...+..+ ..+...-..+... .+..++|++.+..--
T Consensus 142 ~ra~w~~~Avs~~L~-----g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E----~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLL-----GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE----AGSLQKALEHLLDNE 212 (700)
T ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHhhh
Confidence 666777777777555 489999888777654421 2333333444444 556677766665431
Q ss_pred Hc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChh--HHHHHHHHHHcCCCCcCCHHHHH-HHHHHH---
Q 009801 311 RQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAG--GHYNLGVMYYKGIGVKRDVKLAC-KYFLVA--- 382 (525)
Q Consensus 311 ~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~y~~g~~~~~~~~~A~-~~~~~a--- 382 (525)
.. +.......-+.++.. .+++++|+..|...+..+... -+..+=.++.. ..+..+++ ..|...
T Consensus 213 ~~i~Dkla~~e~ka~l~~k-----l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk----~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 213 KQIVDKLAFEETKADLLMK-----LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGK----IKDMLEALKALYAILSEK 283 (700)
T ss_pred hHHHHHHHHhhhHHHHHHH-----HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHH----HhhhHHHHHHHHHHHhhc
Confidence 11 112222334445554 458999999999998774222 22222222211 22333333 333322
Q ss_pred -------------------------------HHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH-------c---
Q 009801 383 -------------------------------ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE-------R--- 421 (525)
Q Consensus 383 -------------------------------~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~-------~--- 421 (525)
++.|-+.....+-..|. +..+.- ..++-+. -
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk-------~p~k~~-~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK-------DPEKVA-FLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh-------chhHhH-HHHHHHHHHHhhcccccC
Confidence 22222333333333332 222111 3333321 1
Q ss_pred ---------CChH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCChH
Q 009801 422 ---------GPWS----SLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAE 486 (525)
Q Consensus 422 ---------~~~~----a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~ 486 (525)
.++. .++.++..+...|+++.|..|++.|+..- ..+-+.-=|.++.+ .|
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH----------------~G 419 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKH----------------AG 419 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHh----------------cC
Confidence 1222 23456777889999999999999999873 33344455788877 66
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHH
Q 009801 487 RHQCAHSLWWQASEQGNEHAALL 509 (525)
Q Consensus 487 ~~~~A~~~~~~a~~~~~~~a~~~ 509 (525)
++++|..|+..|.+.+++|-..+
T Consensus 420 ~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 420 LLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred ChHHHHHHHHHHHhccchhHHHH
Confidence 78999999999999887665444
No 102
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.1e-07 Score=84.67 Aligned_cols=258 Identities=16% Similarity=0.017 Sum_probs=186.1
Q ss_pred hHhHHHHHHHHHHHHh--cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
..+|..|+..+..|++ |.++..+..-+..+.. .++++.|.-..++.++. +...++...+.++...++..+|.
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~----~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMM----LGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHH----HHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 7789999999999864 5677777777777777 77888998888888764 67788888899998888888888
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchh-hh--hcccchhhhhHhhhccCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhc
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEP-IR--IHNGAEENKGALRKSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFG 255 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~ 255 (525)
+.++..-.--..+... ....++.. .+ -.......+...+...+++++|++.--... ++.+.++.+.-|.+++..
T Consensus 138 ~~~~~~~~~~~anal~-~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALP-TLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHhhhhhhhHHhhhhh-hhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 7766211000000000 00000000 00 001112345556677888888887766554 447899999999999888
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCH--------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------CH
Q 009801 256 LRGLRRDRTKALMWFSKAADKGEP--------------QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------LY 315 (525)
Q Consensus 256 ~~~~~~~~~~A~~~~~~a~~~~~~--------------~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~ 315 (525)
+ +.++|+.+|++++..+.. ..+..-|...+. .|++.+|.+.|..++..+ ++
T Consensus 217 ~-----~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 217 D-----NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred c-----chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCccccchhH
Confidence 4 999999999999987532 344455666666 889999999999999764 34
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
..+.+.+.+... .|+..+|+.-...|++.+ ...++..-|.++.. .+++++|++.|+++++.
T Consensus 288 klY~nra~v~~r-----Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~----le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 288 KLYGNRALVNIR-----LGRLREAISDCNEALKIDSSYIKALLRRANCHLA----LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHhHhhhcc-----cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 556666666654 569999999999998885 56788899999999 99999999999999876
No 103
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.87 E-value=1.2e-05 Score=75.61 Aligned_cols=275 Identities=15% Similarity=0.019 Sum_probs=181.4
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHH--HHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhH
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSK--MAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~--~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (525)
.||+.+|.+...++++.+..+.. ..-+..--..||.+.|-.+..++.+..++
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-------------------------- 150 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-------------------------- 150 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC--------------------------
Confidence 78999999999998887644333 22334555567777777777666543110
Q ss_pred hhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC
Q 009801 219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~ 296 (525)
.........+.+.... +|+..|..-..++.+. .++.+....-.+|.. .
T Consensus 151 ---------------------~~l~v~ltrarlll~~-----~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~ 200 (400)
T COG3071 151 ---------------------DTLAVELTRARLLLNR-----RDYPAARENVDQLLEMTPRHPEVLRLALRAYIR----L 200 (400)
T ss_pred ---------------------chHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH----h
Confidence 1223344455555555 3777777777777765 567777777788887 8
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHH-----HHHHHHHHhCCCCCccCHHHHHHHHHHHHh--CCChhHHHHHHHHHHcCC
Q 009801 297 RNYTKALEWLTHAARQQ---LYSAY-----NGIGYLYVKGYGVEKKNYTKAKEYFEKAAD--NEEAGGHYNLGVMYYKGI 366 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~---~~~a~-----~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~ 366 (525)
|++.....++.+..+.+ +.+.. ...|.+-... ..+..+.-..|++..-. ..++.....++.-+..
T Consensus 201 g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~---~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~-- 275 (400)
T COG3071 201 GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR---DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR-- 275 (400)
T ss_pred ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH--
Confidence 88888877777766654 22221 1222222211 01112222234444322 2568888888888888
Q ss_pred CCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHH
Q 009801 367 GVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A 443 (525)
.++.++|.++.+.+++.. +++ +..+--. -..++..+=++..++.+... ++..+..||..+++.+.+.+|
T Consensus 276 --l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~-----l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 276 --LGDHDEAQEIIEDALKRQWDPR-LCRLIPR-----LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred --cCChHHHHHHHHHHHHhccChh-HHHHHhh-----cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 999999999999999884 444 2222111 13667777777777777775 356778999999999999999
Q ss_pred HHHHHHHHHcC-hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 444 FLLYSRMAELG-YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 444 ~~~~~~a~~~~-~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
..+++.|++.. +...+..+|..++. .++..+|...+++++.
T Consensus 348 ~~~leaAl~~~~s~~~~~~la~~~~~----------------~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 348 SEALEAALKLRPSASDYAELADALDQ----------------LGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHH----------------cCChHHHHHHHHHHHH
Confidence 99999999874 66677889999998 4456778888887763
No 104
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4.2e-05 Score=75.36 Aligned_cols=382 Identities=12% Similarity=-0.004 Sum_probs=213.9
Q ss_pred CCCCCCCccccCCC--CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHH-HH-hcCChHHHHHHHHhhhcCCCccC
Q 009801 67 LDPGSWSPVFEPSI--DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVES-AA-MEGDPHARSVLGFLYGMGMMRER 142 (525)
Q Consensus 67 ~~~~~a~~~~~~~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~-a~-~~~~~~a~~~lg~~y~~g~g~~~ 142 (525)
+++++|...-.+.+ -|+++.+..-.-.+.+. ...|++|+...++ .+ ..++. ..+.-+++.+. .+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-------~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr----ln 93 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-------LDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR----LN 93 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-------hhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH----cc
Confidence 44555555555552 24556665554444444 7779999977666 22 33333 22778888777 88
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhc
Q 009801 143 NKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS 222 (525)
Q Consensus 143 d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (525)
..++|++.++ .++..+...+..-|..+.+.++|++|++.|+.+++........ ..+. +....
T Consensus 94 k~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~--------~~r~-----nl~a~---- 155 (652)
T KOG2376|consen 94 KLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE--------ERRA-----NLLAV---- 155 (652)
T ss_pred cHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH--------HHHH-----HHHHH----
Confidence 9999999998 6666667788888999999999999999999987653322111 0000 00000
Q ss_pred cCCcHHHHHH-HHHHH---HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------C----------CHHH
Q 009801 223 RGEDDEAFQI-LEYQA---QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------G----------EPQS 281 (525)
Q Consensus 223 ~~~~~~A~~~-~~~~~---~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~----------~~~a 281 (525)
..+... +.+.. ..+.-+-+|+.+.++...+ +|.+|++.+++|.+. + -...
T Consensus 156 ----~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g-----ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 156 ----AAALQVQLLQSVPEVPEDSYELLYNTACILIENG-----KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred ----HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 001111 11111 1246678899999998774 999999999999432 1 1246
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhCCCCCcc------------CHHHHHHHH
Q 009801 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQLY------SAYNGIGYLYVKGYGVEKK------------NYTKAKEYF 343 (525)
Q Consensus 282 ~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~------~a~~~lg~~~~~g~~~~~~------------~~~~A~~~~ 343 (525)
...|+.++.. .|+.++|...|...+....+ .+.++|-.+-.. ..+..+ ..+..+.-+
T Consensus 227 rvQlayVlQ~----~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d-~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 227 RVQLAYVLQL----QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD-QNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHH----hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc-cccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 6778888988 99999999999988876421 222333222111 000000 001111100
Q ss_pred HH----HH----------------------hC--CChhHHH--HHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHH
Q 009801 344 EK----AA----------------------DN--EEAGGHY--NLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKA 390 (525)
Q Consensus 344 ~~----a~----------------------~~--~~~~a~~--~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 390 (525)
.. ++ .. ..|...+ .+-.++... ...+.+|..++....+.. ....
T Consensus 302 s~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~---~~~~~ka~e~L~~~~~~~p~~s~~v 378 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVR---EKKHKKAIELLLQFADGHPEKSKVV 378 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHH---HHHHhhhHHHHHHHhccCCchhHHH
Confidence 00 00 00 1111111 111111110 123566666666665542 2345
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHH--------HHHHcCChHHHHH-HHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYK--------LVAERGPWSSLSR-WALESYLKGDVGKAFLLYSRMAEL------G- 454 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~--------~a~~~~~~~a~~~-l~~~~~~~g~~~~A~~~~~~a~~~------~- 454 (525)
...++.+... .++++.|++.+. ...+..+..+... +-..++..++.+-|...+.+|+.. +
T Consensus 379 ~L~~aQl~is----~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 379 LLLRAQLKIS----QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 5566666665 899999999998 4555554444433 333455556555555555555532 1
Q ss_pred --hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 455 --YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 455 --~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
....+..++.+-.+ .++-++|...+++-++.+ +.+++..|-..|-
T Consensus 455 ~~l~~~~~~aa~f~lr----------------~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLR----------------HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred hHHHhHHHHHhHHHHh----------------cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 11122333333333 346788999999988844 5667776666553
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.4e-06 Score=78.34 Aligned_cols=180 Identities=15% Similarity=0.108 Sum_probs=140.2
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHH--HHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSK--MAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~--~~la~~y~~~~~~~~A~ 180 (525)
..++..|++.+.--- .+.+-.++..||.+|.. ..++..|...|++....--..+. +.-+....+.+.+..|+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 678999999988743 44467888999999998 88999999999998775444444 44567777788899998
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~ 260 (525)
.....+.+...- ......-...+..+.+++..+..+.++....++++...+.|-+.++.
T Consensus 99 rV~~~~~D~~~L----------------~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke----- 157 (459)
T KOG4340|consen 99 RVAFLLLDNPAL----------------HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE----- 157 (459)
T ss_pred HHHHHhcCCHHH----------------HHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc-----
Confidence 887765432100 00111224556678889999999999888789999999999998777
Q ss_pred cCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 261 RDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
++++.|++-|+.|++-+ ++-.-++++.++++ .+++..|+++....++.|
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy~----~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS----SRQYASALKHISEIIERG 208 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhh
Confidence 49999999999999863 56778899999998 999999999999998864
No 106
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.83 E-value=7e-07 Score=84.56 Aligned_cols=210 Identities=20% Similarity=0.209 Sum_probs=136.4
Q ss_pred hHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHhccccH
Q 009801 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GN----IQSKMAVAYTYLRQDMH 176 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~la~~y~~~~~~ 176 (525)
..++++|...|+++ |..|.. .+++++|.+.|.+|++. ++ ..++...+.+|... ++
T Consensus 28 ~~~~e~Aa~~y~~A------------a~~fk~----~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~ 90 (282)
T PF14938_consen 28 KPDYEEAADLYEKA------------ANCFKL----AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DP 90 (282)
T ss_dssp CHHHHHHHHHHHHH------------HHHHHH----TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-TH
T ss_pred CCCHHHHHHHHHHH------------HHHHHH----HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CH
Confidence 35788888888775 445555 67888898888888652 22 23444555555444 77
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009801 177 DKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGL 256 (525)
Q Consensus 177 ~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~ 256 (525)
++|+++|+++++. +...|++..| +..+..+|.+|....
T Consensus 91 ~~Ai~~~~~A~~~------------------------------y~~~G~~~~a------------A~~~~~lA~~ye~~~ 128 (282)
T PF14938_consen 91 DEAIECYEKAIEI------------------------------YREAGRFSQA------------AKCLKELAEIYEEQL 128 (282)
T ss_dssp HHHHHHHHHHHHH------------------------------HHHCT-HHHH------------HHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHH------------------------------HHhcCcHHHH------------HHHHHHHHHHHHHHc
Confidence 7777777777553 3334444444 456778999996551
Q ss_pred CCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------C---HHHHH
Q 009801 257 RGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------L---YSAYN 319 (525)
Q Consensus 257 ~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~---~~a~~ 319 (525)
+++++|+++|++|++. +. ...+..+|.++.. .+++++|+..|++.+... . ...++
T Consensus 129 ----~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 129 ----GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp ------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 4999999999999875 32 3567789999999 999999999999998642 1 12345
Q ss_pred HHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-----Ch--hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCH
Q 009801 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EA--GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ 388 (525)
Q Consensus 320 ~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-----~~--~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~ 388 (525)
..+.+++. .+|+..|...+++..+.. .. .....|-..+.. +....+++++.-|.+..++++.
T Consensus 201 ~a~l~~L~-----~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~--~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 201 KAILCHLA-----MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE--GDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHH-----TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT--T-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh--CCHHHHHHHHHHHcccCccHHH
Confidence 66667765 569999999999988663 22 233445555554 2356788888888776555443
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.81 E-value=1.6e-06 Score=91.04 Aligned_cols=128 Identities=6% Similarity=-0.026 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 313 ~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
.+++++.+||.+... .+.+++|+.+++.+++. ++..+..+++.++.+ .+.+++|..+++++++. +++
T Consensus 84 ~~~~~~~~La~i~~~-----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~----~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 84 HTELFQVLVARALEA-----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR----QQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred ccHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHhhcCCCCH
Confidence 468899999999876 67999999999999876 788899999999999 99999999999999877 789
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++.+|.++.. .+++++|+..|++++..+ ++.++..+|..+...|+.++|...|++|++.
T Consensus 155 ~~~~~~a~~l~~----~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 155 REILLEAKSWDE----IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHH----hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999998 999999999999999765 4688899999999999999999999999876
No 108
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.00014 Score=71.87 Aligned_cols=354 Identities=10% Similarity=-0.037 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc------------
Q 009801 89 YYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE------------ 156 (525)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~------------ 156 (525)
|..+.+.+. .+..++|+..++ .+++.+...+..-|.+.+. .+++++|+..|+..+.
T Consensus 83 fEKAYc~Yr-------lnk~Dealk~~~-~~~~~~~~ll~L~AQvlYr----l~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 83 FEKAYCEYR-------LNKLDEALKTLK-GLDRLDDKLLELRAQVLYR----LERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred HHHHHHHHH-------cccHHHHHHHHh-cccccchHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 455555554 666777777776 5555556566666665554 6677777777765531
Q ss_pred ---------------------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhh
Q 009801 157 ---------------------GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN 215 (525)
Q Consensus 157 ---------------------~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (525)
.+..+-+++.|.++...|+|++|++.++++.......+..++...--....+ .-+...
T Consensus 151 nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el-~~IrvQ 229 (652)
T KOG2376|consen 151 NLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL-NPIRVQ 229 (652)
T ss_pred HHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH-HHHHHH
Confidence 1355778999999999999999999999997776655444333200000111 112346
Q ss_pred hhHhhhccCCcHHHHHHHHHHHHcCCHHH------HHHHHHHHHhcCCCCcc---------CHHHHHHHHHHHHhcCCHH
Q 009801 216 KGALRKSRGEDDEAFQILEYQAQKGNAGA------MYKIGLFYYFGLRGLRR---------DRTKALMWFSKAADKGEPQ 280 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~a------~~~Lg~~y~~~~~~~~~---------~~~~A~~~~~~a~~~~~~~ 280 (525)
+..++...|+.++|.++|...+..+.++. ..+|--+--... ...+ ....+..+..+.....-..
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~-~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQN-YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccc-cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77788999999999999988766643322 222222111110 0000 0111112222211111223
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC---hhHHH
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---AGGHY 356 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 356 (525)
.+.+.+.+.+. .+..+.+.+...+.-... ....-..+-..... ....+.++..++.+..+... .....
T Consensus 309 i~~N~~lL~l~----tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~----~~~~~~ka~e~L~~~~~~~p~~s~~v~L 380 (652)
T KOG2376|consen 309 IYRNNALLALF----TNKMDQVRELSASLPGMSPESLFPILLQEATKV----REKKHKKAIELLLQFADGHPEKSKVVLL 380 (652)
T ss_pred HHHHHHHHHHH----hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHH----HHHHHhhhHHHHHHHhccCCchhHHHHH
Confidence 44445544443 333333333222211111 11111222222221 01147788888888877643 34677
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHcCCC----CcCCHHHHHHHHHHHHHcCC-
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFL--------VAANAGHQKAFYQLAKMFHTGVG----LKKNLHMATALYKLVAERGP- 423 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~--------~a~~~~~~~a~~~l~~~y~~g~g----~~~~~~~A~~~~~~a~~~~~- 423 (525)
.++.+... +++++.|+..+. ...+.++..+..........+.+ ...-+++|+.||+.......
T Consensus 381 ~~aQl~is----~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 381 LRAQLKIS----QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHh----cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 78888888 999999999998 55555655555444433322211 12235677777776543332
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 424 -WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 424 -~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
...+..++..-.+.|+-++|...+++.++. ++.+++..+-..|..
T Consensus 457 l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 457 LLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 122234444555669999999999999986 567777777777754
No 109
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=2.3e-05 Score=72.29 Aligned_cols=238 Identities=13% Similarity=0.045 Sum_probs=143.2
Q ss_pred hHhHHHHHHHHHHHHhcCC---hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCH--HHHHHHHHHHhccccHHHH
Q 009801 105 VRVMEEATSEVESAAMEGD---PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTYLRQDMHDKA 179 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~--~a~~~la~~y~~~~~~~~A 179 (525)
.+|++-|+.+++-..+.+. ......+|.+|.. .+|+++|...|+-+.+.++. +...+||.++...|.|.+|
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 6789999999888654433 4567789999998 99999999999999887644 5567899999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009801 180 VKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL 259 (525)
Q Consensus 180 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~ 259 (525)
...-.++.+.... .|+ +-.+..+.++-++-..+.+..- +..+-...|+.+++..
T Consensus 111 ~~~~~ka~k~pL~-------------~RL-------lfhlahklndEk~~~~fh~~Lq--D~~EdqLSLAsvhYmR---- 164 (557)
T KOG3785|consen 111 KSIAEKAPKTPLC-------------IRL-------LFHLAHKLNDEKRILTFHSSLQ--DTLEDQLSLASVHYMR---- 164 (557)
T ss_pred HHHHhhCCCChHH-------------HHH-------HHHHHHHhCcHHHHHHHHHHHh--hhHHHHHhHHHHHHHH----
Confidence 7776655321100 111 1222233444444433332221 2235566676666544
Q ss_pred ccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC-HHHHHHHHHHHHhCC-CCCc-
Q 009801 260 RRDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QL-YSAYNGIGYLYVKGY-GVEK- 333 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~-~~a~~~lg~~~~~g~-~~~~- 333 (525)
-.|++|+..|++.+..+ ....-..++.+|.. ..-++-+.+.+.--+.. ++ +.+.+..+-..++-. |...
T Consensus 165 -~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK----lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 165 -MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK----LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred -HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh----cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 38999999999987642 22344568888887 66666666666655554 33 333332222222210 0000
Q ss_pred -----------cCHHHHHHHHHHHH----------h------CCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 334 -----------KNYTKAKEYFEKAA----------D------NEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 334 -----------~~~~~A~~~~~~a~----------~------~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
..+..+....+.-+ + .--|+|-.+|...|.+ ++|.++|+...+.
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~----q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN----QNDVQEAISLCKD 310 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc----cccHHHHHHHHhh
Confidence 01112222211110 0 0247788899999999 9999999876553
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.80 E-value=2.4e-07 Score=97.05 Aligned_cols=129 Identities=10% Similarity=-0.030 Sum_probs=119.1
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
.+++++.+||.+..+ .+.+++|..+++.+++. ++..+..+++.++.. .+.+++|+.++++++..+| ..
T Consensus 84 ~~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~----~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 84 HTELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR----QQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred ccHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHhhcCCCCHH
Confidence 468999999999999 99999999999999987 899999999999998 9999999999999999874 77
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+++.+|.++...|++++|+..|++++.. +++.++.++|.++.. .++.++|...|++|++..
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----------------~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR----------------RGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999976 468999999999988 667899999999998753
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=2.1e-07 Score=93.13 Aligned_cols=211 Identities=13% Similarity=0.104 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 238 (525)
.......++.++.+.|=..+|+..|++..- +......|...|+-.+|..+..+..+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erlem------------------------w~~vi~CY~~lg~~~kaeei~~q~le 452 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLEM------------------------WDPVILCYLLLGQHGKAEEINRQELE 452 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHHH------------------------HHHHHHHHHHhcccchHHHHHHHHhc
Confidence 346677889999999999999999998743 34455667788888999999888887
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 239 -KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 239 -~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
+.++..+-.||++..+. .+|++|.+. -++.|.+.+|..... .++++++.+.++.+++.+
T Consensus 453 k~~d~~lyc~LGDv~~d~------------s~yEkawElsn~~sarA~r~~~~~~~~----~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDP------------SLYEKAWELSNYISARAQRSLALLILS----NKDFSEADKHLERSLEINP 516 (777)
T ss_pred CCCcchhHHHhhhhccCh------------HHHHHHHHHhhhhhHHHHHhhcccccc----chhHHHHHHHHHHHhhcCc
Confidence 57888888888887322 455555554 245577777877776 789999999999998875
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
....++.+|.+... -++++.|.+.|.+.+.. ++.+++.+++..|.. .++..+|...++.|++- ++.
T Consensus 517 lq~~~wf~~G~~ALq-----lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQ-----LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred cchhHHHhccHHHHH-----HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCC
Confidence 68899999999886 45999999999998755 789999999999999 99999999999999876 566
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
..+-|.-.+... .+.+++|+..|.+.+...
T Consensus 588 ~iWENymlvsvd----vge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 588 QIWENYMLVSVD----VGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred eeeechhhhhhh----cccHHHHHHHHHHHHHhh
Confidence 666666666665 789999999999998663
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=4.2e-07 Score=91.11 Aligned_cols=209 Identities=20% Similarity=0.223 Sum_probs=172.5
Q ss_pred hhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHc
Q 009801 213 EENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD-KGEPQSMEFLGEIYAR 291 (525)
Q Consensus 213 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~ 291 (525)
...++.++.+.|-..+|+.++++ +..+-....+|...| +..+|.....+-++ ..++..+..||++..+
T Consensus 401 q~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg-----~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLG-----QHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhc-----ccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 34577788899999999999987 455666677777663 88889999888888 4677888889998877
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCc
Q 009801 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVK 369 (525)
Q Consensus 292 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~ 369 (525)
..-+++|.++.+.- +..|...+|..... .++++++.+.++.+++. .....++.+|.+..+ .
T Consensus 470 ----~s~yEkawElsn~~----sarA~r~~~~~~~~-----~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----l 532 (777)
T KOG1128|consen 470 ----PSLYEKAWELSNYI----SARAQRSLALLILS-----NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----L 532 (777)
T ss_pred ----hHHHHHHHHHhhhh----hHHHHHhhcccccc-----chhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----H
Confidence 55566666555543 33466666665544 45999999999999887 468899999999999 9
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHH
Q 009801 370 RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 370 ~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~ 445 (525)
++++.|..+|.+.+.. ++.+++++++..|.. .++-.+|...+++|++.+ ++..+.+.-.+....|.+++|++
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 9999999999998865 899999999999997 899999999999999875 67788888888999999999999
Q ss_pred HHHHHHHc
Q 009801 446 LYSRMAEL 453 (525)
Q Consensus 446 ~~~~a~~~ 453 (525)
.|.+-+++
T Consensus 609 A~~rll~~ 616 (777)
T KOG1128|consen 609 AYHRLLDL 616 (777)
T ss_pred HHHHHHHh
Confidence 99998765
No 113
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=1.2e-05 Score=81.57 Aligned_cols=287 Identities=15% Similarity=0.072 Sum_probs=200.8
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhc--CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNI 160 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~ 160 (525)
++.+.+...++.. .|++++|+.++++.... +....+-..|.++.. .|+.++|...|+..++. +|.
T Consensus 4 SE~lLY~~~il~e-------~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~k----Lg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 4 SELLLYKNSILEE-------AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLK----LGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcH
Confidence 4445555555554 78899999999985432 445667789999998 89999999999999875 577
Q ss_pred HHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCc-HHHHHHHH
Q 009801 161 QSKMAVAYTYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED-DEAFQILE 234 (525)
Q Consensus 161 ~a~~~la~~y~~-----~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~ 234 (525)
..+..|..+... ..+.+.-..+|++.....|.+. .+..+.+.. ..-..+ ..+..++.
T Consensus 73 ~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~-------~~~rl~L~~----------~~g~~F~~~~~~yl~ 135 (517)
T PF12569_consen 73 DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD-------APRRLPLDF----------LEGDEFKERLDEYLR 135 (517)
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc-------chhHhhccc----------CCHHHHHHHHHHHHH
Confidence 777777777632 2357777888888876644432 111111110 001122 34556667
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---------------CCH----HHHHHHHHHHHcCCCC
Q 009801 235 YQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---------------GEP----QSMEFLGEIYARGAGV 295 (525)
Q Consensus 235 ~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---------------~~~----~a~~~Lg~~y~~g~~~ 295 (525)
.....|.|....+|-.+|... .+..-....+...... ..| .+++.|++.|..
T Consensus 136 ~~l~KgvPslF~~lk~Ly~d~-----~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~---- 206 (517)
T PF12569_consen 136 PQLRKGVPSLFSNLKPLYKDP-----EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY---- 206 (517)
T ss_pred HHHhcCCchHHHHHHHHHcCh-----hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH----
Confidence 778889999999999988422 1111111222221111 112 366889999988
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~ 371 (525)
.|++++|+++.++|++.. .++.+...|.++.+ .|++.+|..+++.|-..+ |-......+..+.+ .++
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-----~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR----a~~ 277 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-----AGDLKEAAEAMDEARELDLADRYINSKCAKYLLR----AGR 277 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH----CCC
Confidence 999999999999999885 68899999999987 679999999999998776 44455667888888 899
Q ss_pred HHHHHHHHHHHHHcC-CH----------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 372 VKLACKYFLVAANAG-HQ----------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 372 ~~~A~~~~~~a~~~~-~~----------~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
.++|......-.+.+ ++ .-....|.+|.. .+++..|+..|..+.+.
T Consensus 278 ~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r----~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 278 IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR----QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 999999887776554 11 122334777876 89999999999888654
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.71 E-value=2.8e-07 Score=76.95 Aligned_cols=105 Identities=19% Similarity=0.118 Sum_probs=67.9
Q ss_pred HHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 342 YFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 342 ~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
.|++++.. ++..+.+.+|..+.. .+++++|...+++++.. .++.++..+|.++.. .+++++|+.++++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 45555554 245566666777776 67777777777666654 456666666766665 6667777777776
Q ss_pred HHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 418 VAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 418 a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+++.++ +..++.+|.++...|++++|+.+++++++..
T Consensus 77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 666653 4566666777777777777777776666653
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=3.8e-07 Score=76.13 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=96.6
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 304 EWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 304 ~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
..|++++..+ +..+...+|..+.. .+++++|+.+++++++. .++.++..+|.++.. .+++++|..++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~ 74 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ-----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAY 74 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4677888765 67888999999987 77999999999999875 578899999999999 99999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH
Q 009801 380 LVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS 425 (525)
Q Consensus 380 ~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 425 (525)
+++++. .++..++++|.++.. .+++++|+.+++++++.++..
T Consensus 75 ~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 75 ALAAALDPDDPRPYFHAAECLLA----LGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcccc
Confidence 999877 568899999999998 999999999999999998644
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=3.3e-06 Score=75.04 Aligned_cols=169 Identities=17% Similarity=0.039 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
++..+ .+++..+.. .|+-+.+..+..+++... +......+|..... .|++.+|+..++++... .+.
T Consensus 65 ~d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-----~g~~~~A~~~~rkA~~l~p~d~ 134 (257)
T COG5010 65 EDLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-----NGNFGEAVSVLRKAARLAPTDW 134 (257)
T ss_pred chHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHH-----hcchHHHHHHHHHHhccCCCCh
Confidence 55566 777777776 778888888888866544 44556557887776 57999999999999876 688
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+++..+|.+|.+ .+++++|..-|.++++. +.+....|+|+.|.- .+|++.|..++..+....+ ...--
T Consensus 135 ~~~~~lgaaldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 135 EAWNLLGAALDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hhhhHHHHHHHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 999999999999 99999999999999987 789999999999997 9999999999999988764 55667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWI 465 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~ 465 (525)
+++.+.-..|++++|.....+-+.. +.+.+++.++
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~~~--~~~~~~~~~l 241 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQELLS--EQAANNVAAL 241 (257)
T ss_pred HHHHHHhhcCChHHHHhhccccccc--hhHhhHHHHH
Confidence 9999999999999998776544433 3333444443
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.65 E-value=5.5e-07 Score=74.56 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH
Q 009801 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (525)
Q Consensus 158 ~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 237 (525)
...+..+.+|..+...|++++|.+.|+.+.. .
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------------------------------------~ 64 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------------------------------------Y 64 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------------------h
Confidence 3457788888888888999998888887754 4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
++.+++.+++||.++... +++++|+..|.+|+.. ++|.+++++|.++.. .|+.+.|++.|+.++...
T Consensus 65 Dp~~~~y~~gLG~~~Q~~-----g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~----lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 65 DAWSFDYWFRLGECCQAQ-----KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA----CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CcccHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence 667788999999999777 4999999999998764 788999999999998 899999999999987764
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=5.1e-06 Score=73.87 Aligned_cols=156 Identities=14% Similarity=0.032 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
+.++ .++...+.. .|+-+.+..+..++.... +......+|..... .+++..|+..+.+++.. .+++
T Consensus 66 d~~i-~~~a~a~~~-----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~----~g~~~~A~~~~rkA~~l~p~d~~ 135 (257)
T COG5010 66 DLSI-AKLATALYL-----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR----NGNFGEAVSVLRKAARLAPTDWE 135 (257)
T ss_pred hHHH-HHHHHHHHh-----cccccchHHHHhhhhccCcccHHHHHHHHHHHHH----hcchHHHHHHHHHHhccCCCChh
Confidence 4555 666666654 346677777777766553 44466669999999 99999999999999987 7899
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
++.-+|.+|.. .|+++.|..-|.++++.. .+.+..++|..++..||++.|..++..+... .+..+-.|++.+
T Consensus 136 ~~~~lgaaldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~ 211 (257)
T COG5010 136 AWNLLGAALDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALV 211 (257)
T ss_pred hhhHHHHHHHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999998 999999999999999885 5788999999999999999999999999877 478888899998
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
... ++++.+|.+.-.+-+
T Consensus 212 ~~~----------------~g~~~~A~~i~~~e~ 229 (257)
T COG5010 212 VGL----------------QGDFREAEDIAVQEL 229 (257)
T ss_pred Hhh----------------cCChHHHHhhccccc
Confidence 877 556677766555433
No 119
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=2.5e-05 Score=79.51 Aligned_cols=268 Identities=14% Similarity=0.107 Sum_probs=158.0
Q ss_pred hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc----------------------CCCHHHHHHHHHHHhccccHHHHHH
Q 009801 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----------------------GGNIQSKMAVAYTYLRQDMHDKAVK 181 (525)
Q Consensus 124 ~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~----------------------~~~~~a~~~la~~y~~~~~~~~A~~ 181 (525)
...+|..+.-... .+|.+.|+++|+|+-. ..+..-+.-.|......|+.+-|+.
T Consensus 858 r~Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred hhhHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHH
Confidence 3445666665555 7899999999999732 1233445556777788899999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 009801 182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRR 261 (525)
Q Consensus 182 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~ 261 (525)
+|..+.+ +.+...+...+|+.++|-++ +-+.++..|+|.||+.|...+
T Consensus 934 ~Y~~A~D------------------------~fs~VrI~C~qGk~~kAa~i---A~esgd~AAcYhlaR~YEn~g----- 981 (1416)
T KOG3617|consen 934 FYSSAKD------------------------YFSMVRIKCIQGKTDKAARI---AEESGDKAACYHLARMYENDG----- 981 (1416)
T ss_pred HHHHhhh------------------------hhhheeeEeeccCchHHHHH---HHhcccHHHHHHHHHHhhhhH-----
Confidence 9998854 34555667788999998766 345689999999999998884
Q ss_pred CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HcCCHHHHHH----HHHHHH
Q 009801 262 DRTKALMWFSKAADK----------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAA-RQQLYSAYNG----IGYLYV 326 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~----lg~~~~ 326 (525)
+..+|+.+|.+|-.. +-.+-+.+|+.+-. ..|.-.|-.||+..- ....+.-++. ++..+.
T Consensus 982 ~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~-----~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSG-----GSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC-----chhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHH
Confidence 999999999987432 22223333333211 345555555555421 0001100000 111111
Q ss_pred hCCCCCccCHHHHHHHHHHHHhC-CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 009801 327 KGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 327 ~g~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~ 405 (525)
..+. . +--.|++..-+-++. .+|..+..-++.+.. ..+|++|++.+-.+-+.. -.|+.+...+..+.
T Consensus 1057 lAF~--t-qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~----~~qyekAV~lL~~ar~~~-----~AlqlC~~~nv~vt 1124 (1416)
T KOG3617|consen 1057 LAFR--T-QQFSALDLIAKDLDAGSDPKLLRRCADFFEN----NQQYEKAVNLLCLAREFS-----GALQLCKNRNVRVT 1124 (1416)
T ss_pred HHHh--h-cccHHHHHHHHhcCCCCCHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHH-----HHHHHHhcCCCchh
Confidence 0000 0 112334433333333 477778888888888 888999988776554321 12344443322211
Q ss_pred CCHHHHHHHHHHH-HHc-C-C-----hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 406 KNLHMATALYKLV-AER-G-P-----WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 406 ~~~~~A~~~~~~a-~~~-~-~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
. ++-+.. ... + + ...+..+|....++|.|-.|-+-|.+|
T Consensus 1125 e------e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1125 E------EFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred H------HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1 111111 011 1 1 234567888899999998888888766
No 120
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.61 E-value=9.5e-06 Score=74.53 Aligned_cols=174 Identities=11% Similarity=0.006 Sum_probs=117.6
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHH---HHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHA---RSVLGFLYGMGMMRERNKGKAFLYHHFAAEG- 157 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a---~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~- 157 (525)
.++..|..|...+. .+++++|+..|++.. .|+.+.+ .+.+|.+|.. .+++++|+.+|++.++.
T Consensus 31 ~~~~~Y~~A~~~~~-------~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQ-------DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Confidence 36667888888876 789999999999954 5555444 4899999999 99999999999999874
Q ss_pred ----CCHHHHHHHHHHHhccc------------------cHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhh
Q 009801 158 ----GNIQSKMAVAYTYLRQD------------------MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN 215 (525)
Q Consensus 158 ----~~~~a~~~la~~y~~~~------------------~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (525)
..+.+++.+|.++...+ ...+|+..|+++++.-|++.-
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------------- 159 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------------- 159 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh--------------------
Confidence 34678899998753322 134677888888776554311
Q ss_pred hhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 009801 216 KGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYA 290 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~ 290 (525)
..+|...+.. +...-+.--+.+|..|.+.+ ++.-|+.-++..++. ...++++.+...|.
T Consensus 160 ----------a~~A~~rl~~-l~~~la~~e~~ia~~Y~~~~-----~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~ 223 (243)
T PRK10866 160 ----------TTDATKRLVF-LKDRLAKYELSVAEYYTKRG-----AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYR 223 (243)
T ss_pred ----------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC-----chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 1122222111 11122333456777777763 777788888887764 23567777777777
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 009801 291 RGAGVERNYTKALEWLTH 308 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~ 308 (525)
. .|..++|..+...
T Consensus 224 ~----lg~~~~a~~~~~~ 237 (243)
T PRK10866 224 Q----LQLNAQADKVAKI 237 (243)
T ss_pred H----cCChHHHHHHHHH
Confidence 7 7777777665543
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.59 E-value=1e-06 Score=73.03 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~ 427 (525)
-+..+.+|..+.. .+++++|...|+..+.. .+...+++||.++.. .+++++|+..|.+|+.++ ++.++
T Consensus 35 l~~lY~~A~~ly~----~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 35 LNTLYRYAMQLME----VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456777777777 88888888888887766 467778888888887 888888888888887775 57788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++|.++...|+.+.|+..|+.|+..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888888765
No 122
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.54 E-value=0.0006 Score=68.07 Aligned_cols=221 Identities=10% Similarity=0.068 Sum_probs=153.6
Q ss_pred cCHHHHHHHHHHHHhc-------CC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHH
Q 009801 261 RDRTKALMWFSKAADK-------GE-PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL------YSAYNGIGYLYV 326 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~-------~~-~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~~~ 326 (525)
++..+-+..|..|+.. |. ...+..+|.+|.. .++.+.|...|++|...+. +..+..-|.+-.
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~----~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN----NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh----cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 4788888888888865 22 3577889999998 8999999999999987652 445566665554
Q ss_pred hCCCCCccCHHHHHHHHHHHHhCC--------------------ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-
Q 009801 327 KGYGVEKKNYTKAKEYFEKAADNE--------------------EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA- 385 (525)
Q Consensus 327 ~g~~~~~~~~~~A~~~~~~a~~~~--------------------~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~- 385 (525)
. ..+++.|+++.++|...- ....|..++++-.. .+-++.-...|.+.+++
T Consensus 437 r-----h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs----~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 437 R-----HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES----LGTFESTKAVYDRIIDLR 507 (835)
T ss_pred h-----hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHh
Confidence 4 348999999999887431 23345566777777 78888888889988877
Q ss_pred -CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH-------HHHHHHHhcCCHHHHHHHHHHHHHcChHH
Q 009801 386 -GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS-------RWALESYLKGDVGKAFLLYSRMAELGYEV 457 (525)
Q Consensus 386 -~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 457 (525)
-.|....|.|+.++. ..-+++|.+.|++.+.+-++...+ .....-+.--..+.|...|++|++.-++.
T Consensus 508 iaTPqii~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE 583 (835)
T ss_pred cCCHHHHHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Confidence 577888888998887 788899999999998886432222 22222233348899999999999863333
Q ss_pred HH----HHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009801 458 AQ----SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAY 514 (525)
Q Consensus 458 a~----~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 514 (525)
.. ..+|.+-.. .|--..|+..|++|...-+.+-.+.+=++|
T Consensus 584 ~aKtiyLlYA~lEEe----------------~GLar~amsiyerat~~v~~a~~l~myni~ 628 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEE----------------HGLARHAMSIYERATSAVKEAQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 223333333 223467888899888766666555555555
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1e-05 Score=71.33 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=77.8
Q ss_pred cCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhH
Q 009801 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (525)
.+...-|...+++.-+ +|.....-.-|+++...+.+++|+++|+.+++.+|.+... ...+-.
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~----------------~KRKlA 128 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI----------------RKRKLA 128 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH----------------HHHHHH
Confidence 3466677777776544 3666777777788888888888888888777654433211 122333
Q ss_pred hhhccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCC
Q 009801 219 LRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA--DKGEPQSMEFLGEIYARGAG 294 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~~ 294 (525)
+...+|+..+||+.+..-.+. +|++++..|+.+|... +++++|.-+|++.+ .+-++..+..+|.+++.-.|
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-----~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE-----GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 344444444555444444443 4455555555555444 25555555555433 22333444444444433111
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 009801 295 VERNYTKALEWLTHAARQ 312 (525)
Q Consensus 295 ~~~~~~~A~~~~~~a~~~ 312 (525)
..+..-|.++|.++++.
T Consensus 204 -~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 204 -AENLELARKYYERALKL 220 (289)
T ss_pred -HHHHHHHHHHHHHHHHh
Confidence 22444444444444444
No 124
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.52 E-value=4.4e-06 Score=66.90 Aligned_cols=94 Identities=21% Similarity=0.104 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC---
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--- 423 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--- 423 (525)
|.+.|.+|+++.. .|+.++|+.+|++++..+ ...++..+|..+.. .|++++|+.++++++...|
T Consensus 1 ~~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcc
Confidence 4678999999999 999999999999999874 24578889999998 9999999999999987743
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 --WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 --~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
......++.+++..|+.++|+.++-.++..
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345567888999999999999999877753
No 125
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.51 E-value=6.8e-05 Score=69.52 Aligned_cols=207 Identities=18% Similarity=0.138 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC---
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--- 349 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--- 349 (525)
.++.+|+.-+.. .-++.+++.+-+..+... -..+...+|..+.. .+-+++++++|+.|.+.
T Consensus 84 ea~lnlar~~e~----l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg-----ls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 84 EAYLNLARSNEK----LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG-----LSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHHHH----HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh-----HHHHHHHHHHHHHHHHHhhc
Confidence 466677777776 667777777777766542 11233445555543 34788999999998754
Q ss_pred -CCh----hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc------CC------HHHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 350 -EEA----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA------GH------QKAFYQLAKMFHTGVGLKKNLHMAT 412 (525)
Q Consensus 350 -~~~----~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~~------~~a~~~l~~~y~~g~g~~~~~~~A~ 412 (525)
+|+ ..+..||.++.. .+|+++|.-+..+|.++ ++ .-++++++..+.. .|..-.|.
T Consensus 155 ~~D~~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~----~G~LgdA~ 226 (518)
T KOG1941|consen 155 NDDAMLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL----LGRLGDAM 226 (518)
T ss_pred cCCceeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH----hcccccHH
Confidence 333 467889999999 99999999999998865 22 3467788888886 78888888
Q ss_pred HHHHHHHHc----CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cChHHHHHHHHHHHhhhCCCcccc
Q 009801 413 ALYKLVAER----GP----WSSLSRWALESYLKGDVGKAFLLYSRMAE--------LGYEVAQSNAAWILDKYGEGSMCM 476 (525)
Q Consensus 413 ~~~~~a~~~----~~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~--------~~~~~a~~~la~~~~~~~~~~~~~ 476 (525)
++.+.|.++ ++ .....-+|.+|...|+.+.|+.-|++|.. +|...++.-.|.++..
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~-------- 298 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET-------- 298 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH--------
Confidence 888887544 43 44566889999999999999999999963 3456677777777765
Q ss_pred CCCCCCCChHhHH-----HHHHHHHHHHhC----CC----HHHHHHHHHHHHccccc
Q 009801 477 GESGFCTDAERHQ-----CAHSLWWQASEQ----GN----EHAALLIGDAYYYGRVR 520 (525)
Q Consensus 477 ~~~~~~~~~~~~~-----~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~g~ 520 (525)
..-.. .|+++-++.++. |. -..+-+|+.+|. ..|.
T Consensus 299 --------~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYr-s~gl 346 (518)
T KOG1941|consen 299 --------LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYR-SKGL 346 (518)
T ss_pred --------HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-hccc
Confidence 22222 377776666653 32 345567888885 4443
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=9.7e-05 Score=65.36 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=113.2
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhH--H-HHHHHHHHcCCCCcC
Q 009801 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG--H-YNLGVMYYKGIGVKR 370 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a--~-~~lg~~y~~g~~~~~ 370 (525)
.++..-|..++++.-.. ++......-|..+.. .+++++|+++|...++.+..+. + -.++.+-. ++
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa-----~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka-----~G 134 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEA-----TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA-----QG 134 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-----hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH-----cC
Confidence 56777888888775443 344555555555654 5699999999999987753322 2 23555444 45
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcC---CHHHH
Q 009801 371 DVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSRWALESYLKG---DVGKA 443 (525)
Q Consensus 371 ~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~l~~~~~~~g---~~~~A 443 (525)
...+|++-+..-++. ++.++|..++.+|.. .+++++|.-+|++.+-..|.+ .+-++|.++|-+| ++.-|
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 556888888887776 899999999999998 999999999999999888744 3448899888877 78889
Q ss_pred HHHHHHHHHcChHHHHHHHHHH
Q 009801 444 FLLYSRMAELGYEVAQSNAAWI 465 (525)
Q Consensus 444 ~~~~~~a~~~~~~~a~~~la~~ 465 (525)
.++|.+|++.......-.+|.+
T Consensus 211 rkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHHH
Confidence 9999999988543333333333
No 127
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.48 E-value=5.6e-05 Score=70.06 Aligned_cols=188 Identities=20% Similarity=0.106 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--
Q 009801 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GEP----QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-- 312 (525)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-- 312 (525)
.+...+|..+... .-++++++.|++|.+. +++ .++..||.+|-. .+|+++|+-+..+|++.
T Consensus 123 q~~l~~~~Ahlgl-----s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~ 193 (518)
T KOG1941|consen 123 QVSLSMGNAHLGL-----SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVN 193 (518)
T ss_pred hhhhhHHHHhhhH-----HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHH
Confidence 3445566666555 4789999999998864 333 578889999988 89999999999998764
Q ss_pred ----CC------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH----hCCCh----hHHHHHHHHHHcCCCCcCCHHH
Q 009801 313 ----QL------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA----DNEEA----GGHYNLGVMYYKGIGVKRDVKL 374 (525)
Q Consensus 313 ----~~------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~----~~~~~----~a~~~lg~~y~~g~~~~~~~~~ 374 (525)
++ ..+++.++..+.. +|..-.|.++.++|. ..|+- ....-+|++|.. .++.+.
T Consensus 194 s~~l~d~~~kyr~~~lyhmaValR~-----~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~----~gd~e~ 264 (518)
T KOG1941|consen 194 SYGLKDWSLKYRAMSLYHMAVALRL-----LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS----RGDLER 264 (518)
T ss_pred hcCcCchhHHHHHHHHHHHHHHHHH-----hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh----cccHhH
Confidence 22 3456677777765 456666777776664 44553 455679999999 999999
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCCcCCH-----HHHHHHHHHHHHcCC--------hHHHHHHHHH
Q 009801 375 ACKYFLVAANA--------GHQKAFYQLAKMFHTGVGLKKNL-----HMATALYKLVAERGP--------WSSLSRWALE 433 (525)
Q Consensus 375 A~~~~~~a~~~--------~~~~a~~~l~~~y~~g~g~~~~~-----~~A~~~~~~a~~~~~--------~~a~~~l~~~ 433 (525)
|..-|+.|... +..+++...+.+... .+-. -.|++.-++.++... -..+.+++.+
T Consensus 265 af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~----~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~i 340 (518)
T KOG1941|consen 265 AFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET----LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASI 340 (518)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999998632 455666666666654 3323 348888777776532 3456789999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009801 434 SYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~ 452 (525)
|..+|.-++=...+.+|-+
T Consensus 341 Yrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 341 YRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHhccchhHHHHHHHHHHH
Confidence 9899877777666666544
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.47 E-value=4.3e-06 Score=81.73 Aligned_cols=105 Identities=15% Similarity=0.019 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWA 431 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~ 431 (525)
...|..... .+++.+|+..|+++++. +++.++.++|.++.. .+++++|+..++++++.++ ..+++++|
T Consensus 6 ~~~a~~a~~----~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 6 EDKAKEAFV----DDDFALAVDLYTQAIDLDPNNAELYADRAQANIK----LGNFTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 344566666 78888888888888876 567788888888887 7888888888888888764 66778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 432 LESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
.+++.+|++++|+..|+++++. +++.+...++.+...
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888876 467777777777655
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.45 E-value=3.8e-06 Score=82.08 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
...|..... .+++++|+..|+++++.++ ..+++.+|.++...|++++|+..++++++. .++.+++++|.++.
T Consensus 6 ~~~a~~a~~----~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 6 EDKAKEAFV----DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 344555555 8999999999999999975 778899999999999999999999999987 57889999999999
Q ss_pred hhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 468 KYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
. .+++++|+.+|+++++.+ ++.+...++.|..
T Consensus 82 ~----------------lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 82 K----------------LEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred H----------------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8 778999999999999875 7888888888744
No 130
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.45 E-value=2.7e-06 Score=73.87 Aligned_cols=118 Identities=19% Similarity=0.070 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQS 460 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~ 460 (525)
..+++.+|.++.. .+++++|+.+|++++...+ +.++.++|.++...|++++|+.++++++.. .+..++.
T Consensus 35 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 35 AFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 4455666666665 6777777777777765531 236667777777777777777777777655 3556677
Q ss_pred HHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCC---HHHHHHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN---EHAALLIG 511 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg 511 (525)
++|.++...|.....+|. .......+++|+.+|++++.... .++...++
T Consensus 111 ~la~i~~~~~~~~~~~g~--~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGD--SEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHHHHHhhHHHHHccc--HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 777777654433222221 01112345677777777776654 44444444
No 131
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.00019 Score=66.44 Aligned_cols=259 Identities=12% Similarity=0.083 Sum_probs=155.1
Q ss_pred cCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhh
Q 009801 141 ERNKGKAFLYHHFAAEGGN---IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~---~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (525)
..|+.-|+.+++-..+.+. ......+|.++...|+|++|+..|.-+.+.+... .....+++
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~----------------~el~vnLA 98 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAP----------------AELGVNLA 98 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCC----------------cccchhHH
Confidence 5688999999988876553 3567889999999999999999999876532211 23355677
Q ss_pred HhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 009801 218 ALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~ 296 (525)
..+...|.+.+|.+.-.++.+. -...-++.|+.-. +.++-+..|...+.- ..+-...|+.+... .
T Consensus 99 cc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl---------ndEk~~~~fh~~LqD-~~EdqLSLAsvhYm----R 164 (557)
T KOG3785|consen 99 CCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL---------NDEKRILTFHSSLQD-TLEDQLSLASVHYM----R 164 (557)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh---------CcHHHHHHHHHHHhh-hHHHHHhHHHHHHH----H
Confidence 7778888888888776664332 1233444444433 334444444444432 23445666777665 5
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCC-----
Q 009801 297 RNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIG----- 367 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~----- 367 (525)
-.|.+|+..|++.+..+ .......++.+|.. .+-++-+-+.+.--+.+ +.+-|....+....+-..
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-----lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-----LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-----cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 68999999999998654 34445677888765 32445555554444433 233344433333333100
Q ss_pred ---------CcCCHHHHHHHHHH----------HHH------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 368 ---------VKRDVKLACKYFLV----------AAN------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 368 ---------~~~~~~~A~~~~~~----------a~~------~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
....++.+....+- |++ .--|+|..+|...|.+ ++|.++|+...+ +.+
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~----q~dVqeA~~L~K---dl~ 312 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN----QNDVQEAISLCK---DLD 312 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc----cccHHHHHHHHh---hcC
Confidence 01111111111110 111 1247888999988987 999999998877 555
Q ss_pred C--hHHHHHHHHHHHhcCCHH
Q 009801 423 P--WSSLSRWALESYLKGDVG 441 (525)
Q Consensus 423 ~--~~a~~~l~~~~~~~g~~~ 441 (525)
| +.-+..-|.+....|+-.
T Consensus 313 PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 313 PTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred CCChHHHHHHHHHHHHhhhhc
Confidence 4 333445566666666433
No 132
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.44 E-value=0.0014 Score=65.54 Aligned_cols=225 Identities=13% Similarity=0.106 Sum_probs=153.7
Q ss_pred hHhhhccCCcHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC------HHHH
Q 009801 217 GALRKSRGEDDEAFQILEYQAQKGN--------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE------PQSM 282 (525)
Q Consensus 217 ~~~~~~~~~~~~A~~~~~~~~~~~~--------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~ 282 (525)
..+....++..+-+..|..++..-+ ...+..+|..|...+ +.+.|...|++|.+... +.+|
T Consensus 354 kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~-----~l~~aRvifeka~~V~y~~v~dLa~vw 428 (835)
T KOG2047|consen 354 KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG-----DLDDARVIFEKATKVPYKTVEDLAEVW 428 (835)
T ss_pred hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC-----cHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 3445567788888888888865533 246778999999884 99999999999998643 5678
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHH----HHHHh-CCCCCccCHHHHHHHHHHHH
Q 009801 283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLY----------SAYNGIG----YLYVK-GYGVEKKNYTKAKEYFEKAA 347 (525)
Q Consensus 283 ~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~----------~a~~~lg----~~~~~-g~~~~~~~~~~A~~~~~~a~ 347 (525)
...|.+=.. ..+++.|+.+.++|...+.. .++..|- .+-.. ...-.-|-++.-...|.+.+
T Consensus 429 ~~waemElr----h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 429 CAWAEMELR----HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHh----hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888777 78999999999999765311 1121111 11111 00000224455556677777
Q ss_pred hC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----cCCCCcCCHHHHHHHHHHHHHc
Q 009801 348 DN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFH----TGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 348 ~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~----~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
+. -.|....|.|+.+.. ..-++++.+.|++.+.+-..+..+.+-..|. ...| ....+.|...|++|++.
T Consensus 505 dLriaTPqii~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg-g~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG-GTKLERARDLFEQALDG 579 (835)
T ss_pred HHhcCCHHHHHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc
Confidence 66 688899999999999 8999999999999988722222222222221 1111 56799999999999997
Q ss_pred CChHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCh
Q 009801 422 GPWSS----LSRWALESYLKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 422 ~~~~a----~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 455 (525)
-|+.. +...+..--.-|--..|+..|++|...-.
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 66543 23445555566888999999999987643
No 133
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=3.6e-05 Score=69.46 Aligned_cols=205 Identities=17% Similarity=0.171 Sum_probs=147.3
Q ss_pred hccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHH--HHHHHcCCCCC
Q 009801 221 KSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFL--GEIYARGAGVE 296 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L--g~~y~~g~~~~ 296 (525)
....++..||+++..-.+. .+-.++..||.+|+.. +++.+|..+|++....-...+.+.+ ++.+.+ .
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~-----Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~----A 91 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRL-----QEFALAAECYEQLGQLHPELEQYRLYQAQSLYK----A 91 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH----h
Confidence 4566889999998876544 4677899999999988 6999999999998876554444433 333444 5
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHH
Q 009801 297 RNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVK 373 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~ 373 (525)
+.+..|+.......+.. +......-+..|. .+|..-+..+.++....++++...+.|.+..+ .++++
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs------e~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyE 161 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYS------EGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYE 161 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc------cccCcchHHHHHhccCCCccchhccchheeec----cccHH
Confidence 67777877766654432 1112233333343 34777777777777777888889999998888 89999
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C------------------------
Q 009801 374 LACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P------------------------ 423 (525)
Q Consensus 374 ~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~------------------------ 423 (525)
.|++-|..|++.+ .+...++++.+... .++++.|+++....++.| |
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy~----~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHYS----SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999999888873 56677888888887 889999999888887653 1
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHH
Q 009801 424 ---WSSLSRWALESYLKGDVGKAFLLYS 448 (525)
Q Consensus 424 ---~~a~~~l~~~~~~~g~~~~A~~~~~ 448 (525)
.++...-+-++++.|+++.|.+.+.
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 1233344567888889888887764
No 134
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=0.0028 Score=61.30 Aligned_cols=208 Identities=12% Similarity=0.041 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHH---------HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHh
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS---------AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD 348 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~---------a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~ 348 (525)
|-++++..-.+-.. .|+.+.-.+.|++|+..-.+. .+.-+-.+++.- ...+|.+.+.+.|+.+++
T Consensus 321 nYDsWfdylrL~e~----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE--le~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 321 NYDSWFDYLRLEES----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE--LEAEDVERTRQVYQACLD 394 (677)
T ss_pred CchHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHh
Confidence 34566666666666 678888888888887653221 111122222210 123488888888888887
Q ss_pred C------CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 349 N------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQ-LAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 349 ~------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~-l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
. ..+..+...+..-.+ +.+...|.+.+-.|+-+-...-.+. .-.+-. ..++++.....|++-++-
T Consensus 395 lIPHkkFtFaKiWlmyA~feIR----q~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl----qL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIR----QLNLTGARKILGNAIGKCPKDKLFKGYIELEL----QLREFDRCRKLYEKFLEF 466 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHH----HcccHHHHHHHHHHhccCCchhHHHHHHHHHH----HHhhHHHHHHHHHHHHhc
Confidence 5 234556666666667 7788888888877775522111111 011111 257899999999999999
Q ss_pred CChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 422 GPWS--SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 422 ~~~~--a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
+|.+ ++...|.+-..+|+.+.|...|+-|+.+...+...-|=..| ..+.+..+.+++|...|++-+
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY------------IdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY------------IDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh------------hhhhhhcchHHHHHHHHHHHH
Confidence 9865 45566777778999999999999999885322222222222 123344778999999999999
Q ss_pred hCC-CHHHHHHHH
Q 009801 500 EQG-NEHAALLIG 511 (525)
Q Consensus 500 ~~~-~~~a~~~lg 511 (525)
+.. |...+...+
T Consensus 535 ~rt~h~kvWisFA 547 (677)
T KOG1915|consen 535 DRTQHVKVWISFA 547 (677)
T ss_pred HhcccchHHHhHH
Confidence 865 544444443
No 135
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.38 E-value=1.5e-06 Score=62.89 Aligned_cols=62 Identities=18% Similarity=0.305 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG-DVGKAFLLYSRMAEL 453 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 453 (525)
+..+..+|.++.. .+++++|+.+|+++++.+| +.+++++|.++..+| ++++|+..++++++.
T Consensus 3 a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4445555555554 5555555555555555543 344555555555555 455555555555543
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.36 E-value=1.3e-05 Score=69.84 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-- 423 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-- 423 (525)
.+.+++.+|..+.. .+++++|+.+|+++++.. ...++.++|.++.. .+++++|+.++++++...+
T Consensus 34 ~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccc
Confidence 34455666666666 666666666666665431 13455566666655 5666666666666665542
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
..++..+|.++...|+...+...+++|
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHH
Confidence 444555566666666555555444443
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=2.2e-05 Score=75.81 Aligned_cols=133 Identities=12% Similarity=0.058 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 009801 111 ATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188 (525)
Q Consensus 111 A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~ 188 (525)
+..++-+..+++...++|..+..+.. .++++.|.+.+...+. ++|+..+...+.++...++.++|++.+++++.
T Consensus 293 ~~~~~~~~~~~~~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 293 AADLLAKRSKRGGLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred hHHHHHHHhCccchHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 33444444457888899999988887 8889999999987654 58888889999999999999999999999876
Q ss_pred HHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHH
Q 009801 189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALM 268 (525)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~ 268 (525)
.. |+.+....++|..+..++ ++++|+.
T Consensus 369 l~------------------------------------------------P~~~~l~~~~a~all~~g-----~~~eai~ 395 (484)
T COG4783 369 LD------------------------------------------------PNSPLLQLNLAQALLKGG-----KPQEAIR 395 (484)
T ss_pred cC------------------------------------------------CCccHHHHHHHHHHHhcC-----ChHHHHH
Confidence 43 333445566666666663 6666666
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 009801 269 WFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALE 304 (525)
Q Consensus 269 ~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~ 304 (525)
.++..+.. .++..|..|+..|.. .|+..+|..
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~----~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAE----LGNRAEALL 429 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHH----hCchHHHHH
Confidence 66665543 556666666666666 665555543
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=3.1e-06 Score=63.87 Aligned_cols=77 Identities=21% Similarity=0.109 Sum_probs=45.6
Q ss_pred cCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCC
Q 009801 405 KKNLHMATALYKLVAERGPW----SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGE 478 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~~----~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~ 478 (525)
.+++++|+.+++++++..+. ..++.+|.+++..|++++|+.++++ .+. .+...++.+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~---------- 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK---------- 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH----------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH----------
Confidence 35666666666666666541 2344556667777777777766666 322 345566666666666
Q ss_pred CCCCCChHhHHHHHHHHHHH
Q 009801 479 SGFCTDAERHQCAHSLWWQA 498 (525)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~a 498 (525)
.+++++|+..|++|
T Consensus 71 ------l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 ------LGKYEEAIKALEKA 84 (84)
T ss_dssp ------TT-HHHHHHHHHHH
T ss_pred ------hCCHHHHHHHHhcC
Confidence 55666676666654
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=1.4e-05 Score=64.80 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC---
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--- 423 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--- 423 (525)
++.++.+|..+.. .+++++|+..|+++++.. + +.+++.+|.++.. .+++++|+.+|++++...|
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLK----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCC
Confidence 4566777777777 788888888887777652 2 4577778888776 7788888888888776542
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 --WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 --~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+.+++.+|.++...|++++|+.+++++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 356777788888888888888888877766
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.34 E-value=3.2e-06 Score=61.12 Aligned_cols=65 Identities=25% Similarity=0.440 Sum_probs=60.4
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcC-CHHHHHHHHHHHHHcCC
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKK-NLHMATALYKLVAERGP 423 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~-~~~~A~~~~~~a~~~~~ 423 (525)
++.++..+|.++.. .+++++|+.+|+++++. +++.+++++|.++.. .+ ++++|++.++++++.+|
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHcCc
Confidence 67899999999999 99999999999999988 678999999999998 77 79999999999998875
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.31 E-value=5.6e-06 Score=78.02 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGI 321 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 321 (525)
+-.....|.++... +++++|++.+.+. ++.++....-.+|.. .++++.|.+.++..-+.+.-....+|
T Consensus 102 ~~~~~~~A~i~~~~-----~~~~~AL~~l~~~---~~lE~~al~Vqi~L~----~~R~dlA~k~l~~~~~~~eD~~l~qL 169 (290)
T PF04733_consen 102 EIVQLLAATILFHE-----GDYEEALKLLHKG---GSLELLALAVQILLK----MNRPDLAEKELKNMQQIDEDSILTQL 169 (290)
T ss_dssp HHHHHHHHHHHCCC-----CHHHHHHCCCTTT---TCHHHHHHHHHHHHH----TT-HHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHcc---CcccHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33445555666444 4777777776654 556666666667776 77777777777776655544555555
Q ss_pred HHHHHhC-CCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 009801 322 GYLYVKG-YGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAK 396 (525)
Q Consensus 322 g~~~~~g-~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~ 396 (525)
+..|..- .| .+++.+|...|+...+. .++..++.++.+... ++++++|...++.+++. +++..+.++..
T Consensus 170 a~awv~l~~g--~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 170 AEAWVNLATG--GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHhC--chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 5544320 01 13566777777776655 345556667777777 77777777777776654 56667777766
Q ss_pred HHHcCCCCcCCH-HHHHHHHHHHHHcCC
Q 009801 397 MFHTGVGLKKNL-HMATALYKLVAERGP 423 (525)
Q Consensus 397 ~y~~g~g~~~~~-~~A~~~~~~a~~~~~ 423 (525)
+... .|+. +.+.+++.+.....|
T Consensus 244 ~~~~----~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 244 CSLH----LGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHH----TT-TCHHHHHHHHHCHHHTT
T ss_pred HHHH----hCCChhHHHHHHHHHHHhCC
Confidence 6555 3443 445555555444443
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=3.4e-05 Score=65.10 Aligned_cols=75 Identities=19% Similarity=0.042 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-ChHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL-GYEVAQSNAA 463 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~a~~~la 463 (525)
+...++.++.. .+++++|+..|+.+++..+ +.+.++++.++...|++++|+..++..... -.+.+....|
T Consensus 50 A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~G 125 (145)
T PF09976_consen 50 AALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHH
Confidence 44444555554 5555555555555555432 224445555555555555555555443221 1333444455
Q ss_pred HHHhh
Q 009801 464 WILDK 468 (525)
Q Consensus 464 ~~~~~ 468 (525)
.++..
T Consensus 126 di~~~ 130 (145)
T PF09976_consen 126 DIYLA 130 (145)
T ss_pred HHHHH
Confidence 55544
No 143
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.31 E-value=2e-05 Score=68.47 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHcCCCCc
Q 009801 335 NYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G---HQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~l~~~y~~g~g~~ 405 (525)
++..+...+...++. ..+.+++.+|.++.. .+++++|+.+|++++.. + .+.++.++|.++.. .
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~----~ 85 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS----N 85 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH----c
Confidence 455555555444333 134566778888887 78888888888888765 2 23477888888887 7
Q ss_pred CCHHHHHHHHHHHHHcCC--hHHHHHHHHHHH-------hcCCHHHHHHHHHHHH
Q 009801 406 KNLHMATALYKLVAERGP--WSSLSRWALESY-------LKGDVGKAFLLYSRMA 451 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~-------~~g~~~~A~~~~~~a~ 451 (525)
+++++|+.+|++++...+ ..++..+|.++. ..|++++|+.++++++
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888888888888887753 455666677666 7777776666666554
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.30 E-value=2.6e-05 Score=67.97 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G 386 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~ 386 (525)
.+.+++.+|..+.. .+++++|+.+|+++++.. .+.++..+|.++.. .+++++|+.+|+++++. .
T Consensus 34 ~a~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 34 EAFVYYRDGMSAQA-----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELNPK 104 (172)
T ss_pred hHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcc
Confidence 56788999999987 789999999999999652 24689999999999 99999999999999987 6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+..++..+|.++.. .++...+...+.+++. .+++|+..+++++..+
T Consensus 105 ~~~~~~~lg~~~~~----~g~~~~a~~~~~~A~~------------------~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 105 QPSALNNIAVIYHK----RGEKAEEAGDQDEAEA------------------LFDKAAEYWKQAIRLA 150 (172)
T ss_pred cHHHHHHHHHHHHH----cCChHhHhhCHHHHHH------------------HHHHHHHHHHHHHhhC
Confidence 78888999999987 6776666655555442 2566777777777664
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.5e-05 Score=72.37 Aligned_cols=98 Identities=20% Similarity=0.151 Sum_probs=68.5
Q ss_pred ccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCH
Q 009801 333 KKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNL 408 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~ 408 (525)
.++|++|+..|.+|++.+ ++.-+.+-+-+|.+ .+.++.|++-.+.|+..+ +..++-+||.+|.. .+++
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~----~gk~ 165 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA----LGKY 165 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc----cCcH
Confidence 457888888888887774 55566677778887 788888888888777774 56677778888876 7788
Q ss_pred HHHHHHHHHHHHcCChHH--HHHHHHHHHhcC
Q 009801 409 HMATALYKLVAERGPWSS--LSRWALESYLKG 438 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~~~a--~~~l~~~~~~~g 438 (525)
++|++.|++|++++|.+. ..+|.++-...+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 888888888887775333 234444443333
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=1.4e-05 Score=72.62 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+.+-.=|.-... .++|.+|+..|.+|+++ .++.-+.+-+.+|.. .+.++.|++-.+.|+..++ ..+|.
T Consensus 82 E~LK~eGN~~m~----~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AVkDce~Al~iDp~yskay~ 153 (304)
T KOG0553|consen 82 ESLKNEGNKLMK----NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAVKDCESALSIDPHYSKAYG 153 (304)
T ss_pred HHHHHHHHHHHH----hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHHHHHHHHHhcChHHHHHHH
Confidence 334455666666 88999999999999988 467777788888887 8999999999999999985 67889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
+||.+|+.+|++++|++.|++|++. .+.....+|.+.-..
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999887 456555666655544
No 147
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.27 E-value=2.3e-05 Score=73.97 Aligned_cols=210 Identities=14% Similarity=0.070 Sum_probs=108.5
Q ss_pred hhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHcCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GEPQSMEFLGEIYARGAGV 295 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~~~ 295 (525)
+...|+++..+....... .....+...++..+... .+.+.++.-++..+.. .++......|.++..
T Consensus 45 ~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~-----~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~---- 114 (290)
T PF04733_consen 45 YIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSP-----SDKESALEELKELLADQAGESNEIVQLLAATILFH---- 114 (290)
T ss_dssp HHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTS-----TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC----
T ss_pred HHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH----
Confidence 344555554444433322 22233444455444221 2445555554443322 123344455566665
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
.+++++|++.+.+. ++.++....-.++.. .++++.|.+.++..-+.++......|+..+..-......+++|
T Consensus 115 ~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~-----~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 115 EGDYEEALKLLHKG---GSLELLALAVQILLK-----MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CCHHHHHHCCCTTT---TCHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred cCCHHHHHHHHHcc---CcccHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 67777777666654 455555555555554 3467777777777666655555555544332210002456677
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 009801 376 CKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDV-GKAFLLYSRM 450 (525)
Q Consensus 376 ~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~-~~A~~~~~~a 450 (525)
...|+...+. ..+..++.++.+... .+++++|...++++++.++ ++...++..+....|+. +.+.+++.+.
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7777765554 345555666666665 6777777777777765543 55556666666666665 3344444443
Q ss_pred H
Q 009801 451 A 451 (525)
Q Consensus 451 ~ 451 (525)
.
T Consensus 263 ~ 263 (290)
T PF04733_consen 263 K 263 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=2.1e-05 Score=66.38 Aligned_cols=110 Identities=17% Similarity=0.097 Sum_probs=82.4
Q ss_pred cCHHHHHHHHHHHHhCC--C---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCC
Q 009801 334 KNYTKAKEYFEKAADNE--E---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-H----QKAFYQLAKMFHTGVG 403 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~l~~~y~~g~g 403 (525)
++..++...+++.++.. . ..+.+.+|.++.. .+++++|...|+.+++.. + +.+..+|+.++..
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~--- 97 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ--- 97 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---
Confidence 36667766666666542 2 3456778888888 899999999998888763 2 3477788888887
Q ss_pred CcCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 404 LKKNLHMATALYKLVAERG-PWSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
.+++++|+..++...... .+.+...+|.++..+|++++|+..|++|+
T Consensus 98 -~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 -QGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -cCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 889999999987643322 35566788999999999999999998874
No 149
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.25 E-value=2.2e-05 Score=62.90 Aligned_cols=94 Identities=20% Similarity=0.126 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--C---hHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--G---YEVA 458 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~---~~~a 458 (525)
.+.++++.++.. .|+.++|+.+|+++++.+. ..++..+|..+...|++++|+..+++++.. + +...
T Consensus 2 ~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 578899999998 9999999999999999863 457889999999999999999999999876 3 4567
Q ss_pred HHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 459 ~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
...++.++.+ .+++++|+.++-.++-..
T Consensus 78 ~~f~Al~L~~----------------~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 78 RVFLALALYN----------------LGRPKEALEWLLEALAET 105 (120)
T ss_pred HHHHHHHHHH----------------CCCHHHHHHHHHHHHHHH
Confidence 7778888887 678899999999887544
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=1.4e-05 Score=61.23 Aligned_cols=92 Identities=27% Similarity=0.366 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (525)
+++.+|.++.. .+++++|+.+++++++. .+..++..+|.++.. .+++++|+.++++++...+ ...+..
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEALEDYEKALELDPDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 46677777777 77888888888877765 344677777877776 6788888888888877653 346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 430 WALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+|.++...|++++|..+++++.+.
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 788888888888888888777654
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.22 E-value=0.0002 Score=65.91 Aligned_cols=178 Identities=14% Similarity=0.028 Sum_probs=117.1
Q ss_pred hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC
Q 009801 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNI---QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (525)
Q Consensus 124 ~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~---~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~ 198 (525)
+...|..|..+.. .+++++|++.|++.... +.. .+.+.+|.+|.+.+++++|+..|++.++..|.+
T Consensus 32 ~~~~Y~~A~~~~~----~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~----- 102 (243)
T PRK10866 32 PSEIYATAQQKLQ----DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH----- 102 (243)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC-----
Confidence 3444555555555 78999999999998764 333 556999999999999999999999998875543
Q ss_pred CCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------CCCccC---HHH
Q 009801 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGL----------RGLRRD---RTK 265 (525)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~----------~~~~~~---~~~ 265 (525)
+..+.+++.+|.++...+ .....| ..+
T Consensus 103 ----------------------------------------~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~ 142 (243)
T PRK10866 103 ----------------------------------------PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARA 142 (243)
T ss_pred ----------------------------------------CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHH
Confidence 234678888887753331 011122 245
Q ss_pred HHHHHHHHHhc--CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHH
Q 009801 266 ALMWFSKAADK--GEP---QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (525)
Q Consensus 266 A~~~~~~a~~~--~~~---~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~ 340 (525)
|+..|++.++. +.. .+...|..+.. .-+.--..+|..|.. .+++..|+
T Consensus 143 A~~~~~~li~~yP~S~ya~~A~~rl~~l~~----------------------~la~~e~~ia~~Y~~-----~~~y~AA~ 195 (243)
T PRK10866 143 AFRDFSKLVRGYPNSQYTTDATKRLVFLKD----------------------RLAKYELSVAEYYTK-----RGAYVAVV 195 (243)
T ss_pred HHHHHHHHHHHCcCChhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH-----cCchHHHH
Confidence 66777777765 211 12222211111 112223567777776 45888888
Q ss_pred HHHHHHHhC-----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 341 EYFEKAADN-----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 341 ~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
.-++..++. ..+++++.+...|.. .+..++|..+...
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~----lg~~~~a~~~~~~ 237 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQ----LQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHH----cCChHHHHHHHHH
Confidence 888888865 356788888888888 8888888776543
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=3.4e-05 Score=62.49 Aligned_cols=94 Identities=26% Similarity=0.341 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--C---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C---
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G--- 386 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~--- 386 (525)
.++.+|..+.. .+++++|+..|+++++.. + +.+++.+|.++.. .+++++|+.+|++++.. +
T Consensus 4 ~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 4 AYYDAALLVLK-----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCCc
Confidence 34444444443 335555555555554431 1 2345555555555 55555555555555543 1
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
.+.++..+|.++.. .+++++|+.+++++++..|
T Consensus 75 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 75 APDALLKLGMSLQE----LGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred ccHHHHHHHHHHHH----hCChHHHHHHHHHHHHHCc
Confidence 13455555555554 5555555555555555544
No 153
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=0.00013 Score=70.75 Aligned_cols=132 Identities=16% Similarity=0.077 Sum_probs=94.8
Q ss_pred cCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHH
Q 009801 156 EGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 156 ~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
+.+...+++..+..+...+++++|+..+..++.
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~----------------------------------------------- 334 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIA----------------------------------------------- 334 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHH-----------------------------------------------
Confidence 346677888888888888888888888777643
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 236 ~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
..|+++-.+...+.++...+ +.++|.+.+++++.. +.+....++|..|.. .+++.+|+..++......
T Consensus 335 -~~P~N~~~~~~~~~i~~~~n-----k~~~A~e~~~kal~l~P~~~~l~~~~a~all~----~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 335 -AQPDNPYYLELAGDILLEAN-----KAKEAIERLKKALALDPNSPLLQLNLAQALLK----GGKPQEAIRILNRYLFND 404 (484)
T ss_pred -hCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh----cCChHHHHHHHHHHhhcC
Confidence 35577777777888887773 888888888887765 446677778888888 777888888888877653
Q ss_pred --CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC
Q 009801 314 --LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (525)
Q Consensus 314 --~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~ 349 (525)
++..+..|+..|.. .|+..++...+-.....
T Consensus 405 p~dp~~w~~LAqay~~-----~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 405 PEDPNGWDLLAQAYAE-----LGNRAEALLARAEGYAL 437 (484)
T ss_pred CCCchHHHHHHHHHHH-----hCchHHHHHHHHHHHHh
Confidence 77778888887765 44555555555444443
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.20 E-value=3e-05 Score=59.36 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
+++.+|.++.. .+++++|+.+++++++..+ ..++..+|.++...|++++|+.++++++.. .+..++..+|.+
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 46788888887 8999999999999998865 467889999999999999999999999876 455688899999
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+.. .+++++|..+++++++..
T Consensus 78 ~~~----------------~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 78 YYK----------------LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHH----------------HHhHHHHHHHHHHHHccC
Confidence 987 778999999999887643
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.19 E-value=6.6e-06 Score=62.08 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHH
Q 009801 369 KRDVKLACKYFLVAANAG----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGK 442 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~ 442 (525)
++++++|+.+++++++.. +...++++|.+|.. .+++++|+.++++ .+.+ +....+.+|.+++.+|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 466777777777777652 23455566777776 7777777777777 3332 34566666777777777777
Q ss_pred HHHHHHHH
Q 009801 443 AFLLYSRM 450 (525)
Q Consensus 443 A~~~~~~a 450 (525)
|+..|++|
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 77777764
No 156
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.14 E-value=0.00027 Score=63.35 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---- 349 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---- 349 (525)
+..++..|..+.. .|++.+|+..|++..... -+.+.+.+|..++. .+++++|+..+++-++.
T Consensus 5 ~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-----~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 5 AEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-----QGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCCCC
Confidence 3444555555555 555555555555555431 24455555555554 33555555555555443
Q ss_pred -CChhHHHHHHHHHHcC-------CCCcCCHHHHHHHHHHHHHc--C-----------------CHHHHHHHHHHHHcCC
Q 009801 350 -EEAGGHYNLGVMYYKG-------IGVKRDVKLACKYFLVAANA--G-----------------HQKAFYQLAKMFHTGV 402 (525)
Q Consensus 350 -~~~~a~~~lg~~y~~g-------~~~~~~~~~A~~~~~~a~~~--~-----------------~~~a~~~l~~~y~~g~ 402 (525)
..+.+++.+|.++... ...+....+|+..|+..++. + -..--+.+|..|..
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-- 153 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK-- 153 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 1233555555554331 00022334555555555433 1 12233445666776
Q ss_pred CCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHH
Q 009801 403 GLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 403 g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A 443 (525)
.+.+..|+..++.+++.-| ..++..++..+..+|..+.|
T Consensus 154 --~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 --RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp --TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred --cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777888888887777643 45667777777777776644
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.12 E-value=0.00018 Score=73.48 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCC---ccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVE---KKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGI 366 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~---~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~ 366 (525)
..+..+|+.+|++|++.+ ++.++..++.++....... ..+..++....+++... .++.++..+|.....
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-- 432 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-- 432 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh--
Confidence 445778888888888764 6677777666664322111 12345566666665442 345677778888777
Q ss_pred CCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH
Q 009801 367 GVKRDVKLACKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 428 (525)
.+++++|...+++|+++ .+..++..+|.++.. .|++++|++.|++|+.++|....+
T Consensus 433 --~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 433 --KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred --cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchH
Confidence 78888888888888877 356677778888886 888888888888888887644333
No 158
>PRK11906 transcriptional regulator; Provisional
Probab=98.12 E-value=0.0002 Score=69.74 Aligned_cols=150 Identities=12% Similarity=0.067 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHH---Hc--CCHHHHHHHHHHHHhC----CCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHc
Q 009801 296 ERNYTKALEWLTHAA---RQ--QLYSAYNGIGYLYVKG----YGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYK 364 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~---~~--~~~~a~~~lg~~~~~g----~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~ 364 (525)
..+.+.|+.+|.+|+ +. +.+.++..++.++..+ +.....+..+|....++|++. +|+.++..+|.+...
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 446788999999998 43 3688888888887643 322344788899999999877 588889999998887
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCC
Q 009801 365 GIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS---SLSRWALESYLKGD 439 (525)
Q Consensus 365 g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~---a~~~l~~~~~~~g~ 439 (525)
.++++.|..+|++|... +.+.+++..|.+... .|+.++|.+..+++++++|.. ....+-...|....
T Consensus 351 ----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 351 ----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred ----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc
Confidence 88899999999999877 678888999988876 899999999999999998844 23333332556677
Q ss_pred HHHHHHHHHHHHHc
Q 009801 440 VGKAFLLYSRMAEL 453 (525)
Q Consensus 440 ~~~A~~~~~~a~~~ 453 (525)
.++|+..|-+-.+.
T Consensus 423 ~~~~~~~~~~~~~~ 436 (458)
T PRK11906 423 LKNNIKLYYKETES 436 (458)
T ss_pred hhhhHHHHhhcccc
Confidence 88888887665554
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.10 E-value=7.6e-05 Score=69.13 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=62.0
Q ss_pred hhHHHHHHHHH-HcCCCCcCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--
Q 009801 352 AGGHYNLGVMY-YKGIGVKRDVKLACKYFLVAANA--GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-- 423 (525)
Q Consensus 352 ~~a~~~lg~~y-~~g~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-- 423 (525)
....+..+..+ .. .+++++|+..|++.++. ++ +.+++++|.+|.. .+++++|+..|+++++..|
T Consensus 142 e~~~Y~~A~~l~~~----~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 142 ANTDYNAAIALVQD----KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCC
Confidence 34445555443 44 46777777777777665 22 4677777777776 7777777777777776532
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 ---WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 ---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++++.+|.++..+|++++|+..|++.++.
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566777777777777777777777777665
No 160
>PRK11906 transcriptional regulator; Provisional
Probab=98.10 E-value=0.00024 Score=69.24 Aligned_cols=163 Identities=15% Similarity=0.066 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHH---hc--CCHHHHHHHHHHHHcC----C-CCCCCHHHHHHHHHHHHHcC
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAA---DK--GEPQSMEFLGEIYARG----A-GVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~---~~--~~~~a~~~Lg~~y~~g----~-~~~~~~~~A~~~~~~a~~~~ 313 (525)
..+..|...... +.+.+.+.|+.+|.+|+ +. +.+.++..++.++... . ....+..+|...-++|++.+
T Consensus 257 d~ylrg~~~~~~--~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld 334 (458)
T PRK11906 257 DEMLAGKKELYD--FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT 334 (458)
T ss_pred HHHHHHHHHhhc--cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence 346667766655 56678899999999999 43 5678888888887664 2 24667888999999999875
Q ss_pred --CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHH
Q 009801 314 --LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK 389 (525)
Q Consensus 314 --~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~ 389 (525)
++.++..+|.+... .++++.|..+|++|... +.+.+++..|++..- .++.++|....++++++....
T Consensus 335 ~~Da~a~~~~g~~~~~-----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 335 TVDGKILAIMGLITGL-----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred CCCHHHHHHHHHHHHh-----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchh
Confidence 89999999998765 45799999999999876 688999999999999 999999999999999986433
Q ss_pred ---HHHHHHH-HHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 390 ---AFYQLAK-MFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 390 ---a~~~l~~-~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
+...+-. +|. ....+.|+..|-+-.+..
T Consensus 406 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 406 RKAVVIKECVDMYV-----PNPLKNNIKLYYKETESE 437 (458)
T ss_pred hHHHHHHHHHHHHc-----CCchhhhHHHHhhccccc
Confidence 3333333 454 467888999887665543
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.08 E-value=0.00023 Score=63.71 Aligned_cols=167 Identities=19% Similarity=0.168 Sum_probs=113.4
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh--cC---ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EG---DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG- 157 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~- 157 (525)
.++++|..|...+. .+++.+|+..|++..+ |+ -+.+++.+|..|.. .+++.+|+..|++-++.
T Consensus 4 ~~~~lY~~a~~~~~-------~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQ-------QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHH-------CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence 46788999999887 8999999999999653 33 37889999999998 89999999999998763
Q ss_pred -C---CHHHHHHHHHHHhcc-----------ccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhc
Q 009801 158 -G---NIQSKMAVAYTYLRQ-----------DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS 222 (525)
Q Consensus 158 -~---~~~a~~~la~~y~~~-----------~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (525)
+ -+.+++.+|..+... ....+|+..|+.++..-|++..
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y--------------------------- 125 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY--------------------------- 125 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT---------------------------
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH---------------------------
Confidence 2 347889999886653 3345788888888876555421
Q ss_pred cCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHcCCCCCC
Q 009801 223 RGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE---PQSMEFLGEIYARGAGVER 297 (525)
Q Consensus 223 ~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~g~~~~~ 297 (525)
..+|...+.. +...-..--+.+|..|.+. +.+.-|+.-++.+++. +. ..++..|+..|.. .+
T Consensus 126 ---~~~A~~~l~~-l~~~la~~e~~ia~~Y~~~-----~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~----l~ 192 (203)
T PF13525_consen 126 ---AEEAKKRLAE-LRNRLAEHELYIARFYYKR-----GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK----LG 192 (203)
T ss_dssp ---HHHHHHHHHH-HHHHHHHHHHHHHHHHHCT-----T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH----TT
T ss_pred ---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH----hC
Confidence 1223222222 1222234456678888777 4888888888888875 22 3567777777777 66
Q ss_pred CHHH
Q 009801 298 NYTK 301 (525)
Q Consensus 298 ~~~~ 301 (525)
..+.
T Consensus 193 ~~~~ 196 (203)
T PF13525_consen 193 LKQA 196 (203)
T ss_dssp -HHH
T ss_pred ChHH
Confidence 6553
No 162
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00056 Score=59.82 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=41.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHhCCCCC
Q 009801 261 RDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVE 332 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~ 332 (525)
..+++|..+|.+|.. +|.. .+++..|-..|.++++. + -+..+...+.+|..
T Consensus 28 ~k~eeAadl~~~Aan------------~ykl----aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk----- 86 (288)
T KOG1586|consen 28 NKYEEAAELYERAAN------------MYKL----AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK----- 86 (288)
T ss_pred cchHHHHHHHHHHHH------------HHHH----HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-----
Confidence 478888888877743 4444 45566666666666542 1 24455666666654
Q ss_pred ccCHHHHHHHHHHHHh
Q 009801 333 KKNYTKAKEYFEKAAD 348 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~ 348 (525)
.++++|+.+++++++
T Consensus 87 -~~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 87 -VDPEEAVNCLEKAIE 101 (288)
T ss_pred -cChHHHHHHHHHHHH
Confidence 378888888888775
No 163
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.05 E-value=0.00011 Score=68.08 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHH-HcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----Ch
Q 009801 387 HQKAFYQLAKMF-HTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL-----GY 455 (525)
Q Consensus 387 ~~~a~~~l~~~y-~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~ 455 (525)
+....+..+..+ .. .+++++|+..|++.++..| +++++++|.+++..|++++|+..|+++++. ..
T Consensus 141 ~e~~~Y~~A~~l~~~----~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~ 216 (263)
T PRK10803 141 DANTDYNAAIALVQD----KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA 216 (263)
T ss_pred CHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 445566666654 33 6899999999999999865 579999999999999999999999999964 26
Q ss_pred HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 456 EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 456 ~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+++++.+|.++.. .+++++|+..|++.++..
T Consensus 217 ~dAl~klg~~~~~----------------~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 217 ADAMFKVGVIMQD----------------KGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred hHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHC
Confidence 8899999999987 678999999999998754
No 164
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00061 Score=59.60 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHHHhC---C--C---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---E--E---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 319 ~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---~--~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
..||.+|.. ...++++|+.+|++|.+- . + ...+...+..-.. .+++.+|+..|++.+.. +++
T Consensus 117 ~~iaEiyEs----dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~----leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 117 IEIAEIYES----DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ----LEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hhHHHHHhh----hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccch
Confidence 345566654 123666666666666543 1 1 1123344555555 67788888888877654 333
Q ss_pred H-------HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh
Q 009801 389 K-------AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (525)
Q Consensus 389 ~-------a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (525)
. -.+.-|.++.. ..|.-.+...+++-.+.+|.
T Consensus 189 LLKys~KdyflkAgLChl~----~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 189 LLKYSAKDYFLKAGLCHLC----KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHhHHHHHHHHHHHHhHh----cccHHHHHHHHHHHHhcCCc
Confidence 2 22333555553 45666666666666666663
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.03 E-value=1.3e-05 Score=57.02 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=43.3
Q ss_pred HHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Q 009801 129 VLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (525)
Q Consensus 129 ~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~ 192 (525)
.+|..+.. .+++++|+..|+++++. ++..+++.+|.++...|++++|+.+|+++++..|.
T Consensus 2 ~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45666666 77778888888877764 46777788888888888888888888877766443
No 166
>PRK15331 chaperone protein SicA; Provisional
Probab=98.03 E-value=0.00012 Score=61.16 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 238 (525)
..+..+..|.-+...|++++|...|+-+.- .+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------------------------------------------------~d 67 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------------------------------------------------YD 67 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------------------hC
Confidence 346778888888888888888888876532 45
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS 316 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~ 316 (525)
+.+++.+..||.++... +++++|+..|-.|.. .++|...+..|.+|.. .++.++|+..|+.+++...-.
T Consensus 68 ~~n~~Y~~GLaa~~Q~~-----k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~----l~~~~~A~~~f~~a~~~~~~~ 138 (165)
T PRK15331 68 FYNPDYTMGLAAVCQLK-----KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL----MRKAAKARQCFELVNERTEDE 138 (165)
T ss_pred cCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccCCCCccchHHHHHHH----hCCHHHHHHHHHHHHhCcchH
Confidence 67788889999999766 599999999998765 4788899999999999 999999999999998865433
Q ss_pred HHHHHHHHH
Q 009801 317 AYNGIGYLY 325 (525)
Q Consensus 317 a~~~lg~~~ 325 (525)
.....+..+
T Consensus 139 ~l~~~A~~~ 147 (165)
T PRK15331 139 SLRAKALVY 147 (165)
T ss_pred HHHHHHHHH
Confidence 333333333
No 167
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.03 E-value=3.4e-05 Score=57.25 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHH
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRMAEL----G-----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~-----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 494 (525)
..++.++|.++..+|++++|+.+|+++++. | ...+++++|.++.. .+++++|+.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----------------~g~~~~A~~~ 68 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----------------LGDYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----------------TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----------------cCCHHHHHHH
Confidence 346788999999999999999999999854 2 24578889999988 7799999999
Q ss_pred HHHHHh
Q 009801 495 WWQASE 500 (525)
Q Consensus 495 ~~~a~~ 500 (525)
+++|++
T Consensus 69 ~~~al~ 74 (78)
T PF13424_consen 69 YQKALD 74 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999985
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.99 E-value=2.7e-05 Score=55.43 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=33.6
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+|..+.. .+++++|+..|+++++..| +.+++.+|.++..+|++++|+.+|+++++.
T Consensus 3 ~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555554 5666666666666666653 455566666666666666666666666554
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00017 Score=65.99 Aligned_cols=115 Identities=18% Similarity=0.149 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHH
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM 410 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~ 410 (525)
+.++-+.-++.-+.. +|++.|..||.+|.. .+++..|...|.+|.++ ++++.+.-+|.++.... ......+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a-~~~~ta~ 211 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA-GQQMTAK 211 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCcccHH
Confidence 456666666665544 799999999999999 99999999999999988 67888888887765433 3667899
Q ss_pred HHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 411 ATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 411 A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+...+++++..++ ..+.+.||..++..|+|++|+..++..++..
T Consensus 212 a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 212 ARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999999985 6788999999999999999999999998874
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00026 Score=67.26 Aligned_cols=140 Identities=18% Similarity=0.136 Sum_probs=96.4
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~ 397 (525)
.-.-|..|+. .+++..|...|++|+.. .-|.. .-+.++... +..--..++.||+.+
T Consensus 211 ~ke~Gn~~fK-----~gk~~~A~~~Yerav~~----------l~~~~----~~~~ee~~~-----~~~~k~~~~lNlA~c 266 (397)
T KOG0543|consen 211 KKERGNVLFK-----EGKFKLAKKRYERAVSF----------LEYRR----SFDEEEQKK-----AEALKLACHLNLAAC 266 (397)
T ss_pred HHHhhhHHHh-----hchHHHHHHHHHHHHHH----------hhccc----cCCHHHHHH-----HHHHHHHHhhHHHHH
Confidence 3556777766 67888888888887753 11111 111111111 111123467888999
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCc
Q 009801 398 FHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGS 473 (525)
Q Consensus 398 y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~ 473 (525)
+.. .+++.+|+.+..++++.+ +..|+|+.|.++..+|+++.|+..|+++++. .|-.+...|..+-.+.
T Consensus 267 ~lK----l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~---- 338 (397)
T KOG0543|consen 267 YLK----LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI---- 338 (397)
T ss_pred HHh----hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----
Confidence 988 889999999999998886 4678999999999999999999999999876 5777888888877663
Q ss_pred cccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 474 MCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 474 ~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
....++..+.|.+...
T Consensus 339 -----------~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 -----------REYEEKEKKMYANMFA 354 (397)
T ss_pred -----------HHHHHHHHHHHHHHhh
Confidence 3344555667776553
No 171
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.93 E-value=6.5e-05 Score=55.67 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----GP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.++..+|++++|+.++++|++.
T Consensus 6 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455666777766 67777777777777644 11 335567777777788888888887777653
No 172
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.025 Score=54.99 Aligned_cols=343 Identities=15% Similarity=0.047 Sum_probs=179.8
Q ss_pred hHhHHHHHHHHHHHHhc--CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG--NIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+++..|...+++|.+. .+..-+...+.+-.. .+...-|...+.+|+..= -..-.+..-.+-...|+...|.
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emk----nk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMK----NKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh----hhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 56777777777776543 445555556655555 566667777777776531 1122233333333356666666
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGL 259 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~ 259 (525)
..|++=++-.|. .+.+.+....-.+.+..+.|..+|++-+-- -+...+...+..-...
T Consensus 162 qiferW~~w~P~-----------------eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~---- 220 (677)
T KOG1915|consen 162 QIFERWMEWEPD-----------------EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKH---- 220 (677)
T ss_pred HHHHHHHcCCCc-----------------HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhc----
Confidence 666655443222 122233333334445555566666554322 2344444445444444
Q ss_pred ccCHHHHHHHHHHHHhc-CCH--HHHHHH--HHHHHcCCCCCCCHHHHHHHHHHHHHc----------------------
Q 009801 260 RRDRTKALMWFSKAADK-GEP--QSMEFL--GEIYARGAGVERNYTKALEWLTHAARQ---------------------- 312 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~-~~~--~a~~~L--g~~y~~g~~~~~~~~~A~~~~~~a~~~---------------------- 312 (525)
++...|...|++|++. ++. ...... |..=.. ++.++.|.-.|+-|++.
T Consensus 221 -g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~----qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 221 -GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER----QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred -CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 3666666666666653 221 111111 111111 34455555555555442
Q ss_pred ----------------------C--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChh---------HHHHHH
Q 009801 313 ----------------------Q--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAG---------GHYNLG 359 (525)
Q Consensus 313 ----------------------~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~---------a~~~lg 359 (525)
+ +-++++..-.+-.. .|+.+...+.|++|+....|. .+..+-
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~-----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES-----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh-----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 1 23333333333332 246666666666666543221 111222
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc-CC-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH-HHHH
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANA-GH-----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS-RWAL 432 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~-~~-----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-~l~~ 432 (525)
.++..-. ..+|.+.+.+.|+.++++ .| +..+...+..-.. +.+...|...+-.|+..-|-.-.+ ..-.
T Consensus 371 YalyeEl-e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR----q~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 371 YALYEEL-EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR----QLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHH-HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH----HcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 2221100 145666666667666665 11 2222222222222 567777777777777665533332 3334
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCC
Q 009801 433 ESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503 (525)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 503 (525)
+-..+++++.....|++.++.+ +..++...|-+-.. .++.+.|...|+-|+.+..
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~----------------LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS----------------LGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH----------------hhhHHHHHHHHHHHhcCcc
Confidence 4556779999999999999875 55567777776665 5567899999999998763
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0001 Score=67.45 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=93.9
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
.+|+|++-+..||.+|+. .+++..|..-|.++. .+.|++.+..+|.++....| ..+..++...+++++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~-------~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMA-------LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQMTAKARALLRQALAL 222 (287)
T ss_pred hCCCCchhHHHHHHHHHH-------hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHhc
Confidence 689999999999999998 899999999999986 67899999999997665444 67889999999999875
Q ss_pred --CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Q 009801 158 --GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (525)
Q Consensus 158 --~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~ 193 (525)
+|+.+++.||..++.+++|.+|+..++..++..+.+
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 589999999999999999999999999998865543
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.0005 Score=70.30 Aligned_cols=136 Identities=17% Similarity=0.063 Sum_probs=101.6
Q ss_pred CCHHH--HHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC----CCHHHHHHHHHHHHH
Q 009801 240 GNAGA--MYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVE----RNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~~~a--~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~----~~~~~A~~~~~~a~~ 311 (525)
.++.| ++..|.-|... ....+..+|+.+|++|++. +++.++-.++.+|....+.. .+..++....+++..
T Consensus 335 ~~~~Ay~~~lrg~~~~~~--~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNS--GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44444 45556666554 3456789999999999875 67788888777765532211 234566666666555
Q ss_pred c----CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 312 Q----QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 312 ~----~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
. ..+.++..+|.+... .+++++|...+++|++.+ +..++..+|.++.. .|+.++|+..|++|.+++
T Consensus 413 l~~~~~~~~~~~ala~~~~~-----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALV-----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 3 256778888888765 569999999999999885 56788999999999 999999999999999884
No 175
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.87 E-value=0.0004 Score=54.84 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=82.2
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------hHHHH
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------WSSLS 428 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~ 428 (525)
.-|..... .++.+.|++.|.+++.. ..+.++++-+..+.- +++.++|+.-+.+|+++.. -.++.
T Consensus 48 l~~valaE----~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 48 LKAIALAE----AGDLDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHh----ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 34566666 78999999999999876 688899999999987 8999999999999998842 35778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNA 462 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~l 462 (525)
..|.+|...|+.+.|..-|+.|++.|++.+-..|
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QL 153 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSKFAREQL 153 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHH
Confidence 8999999999999999999999999987765544
No 176
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0061 Score=54.74 Aligned_cols=229 Identities=14% Similarity=0.024 Sum_probs=138.8
Q ss_pred hhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERN 298 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~ 298 (525)
+...|.|..++..-++.-.. +++.-...+.+.|...| .+..-+.--+.+. .....+...++.+... .++
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg-----~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~----e~~ 87 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALG-----QYQIVISEIKEGK-ATPLQAVRLLAEYLEL----ESN 87 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcc-----ccccccccccccc-CChHHHHHHHHHHhhC----cch
Confidence 34567788888776665444 66777777777777664 2211111111111 1223444555555555 555
Q ss_pred HHHHHHHHHHH-HHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHH
Q 009801 299 YTKALEWLTHA-ARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL 374 (525)
Q Consensus 299 ~~~A~~~~~~a-~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~ 374 (525)
.+.-+.-+.+- +... +...+..-+.++.. .+++++|++...+ .++-++.-.=-.++.+ ..+.+-
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~-----~~~~deAl~~~~~---~~~lE~~Al~VqI~lk----~~r~d~ 155 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMH-----DGDFDEALKALHL---GENLEAAALNVQILLK----MHRFDL 155 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc-----CCChHHHHHHHhc---cchHHHHHHHHHHHHH----HHHHHH
Confidence 44444333333 2221 22334444455544 4588888888776 2333443333455666 677888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 375 A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
|.+..++..+.++......|+..+..-.........|..+|+...+.-+ +.-....+.+...+|++++|...++.|+.
T Consensus 156 A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 156 AEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888777766666666766664433234458888999988887543 34445667778888999999999999987
Q ss_pred c--ChHHHHHHHHHHHhhhC
Q 009801 453 L--GYEVAQSNAAWILDKYG 470 (525)
Q Consensus 453 ~--~~~~a~~~la~~~~~~~ 470 (525)
. ++++++.|+-.+-...|
T Consensus 236 kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLG 255 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhC
Confidence 6 67888888777766643
No 177
>PRK15331 chaperone protein SicA; Provisional
Probab=97.85 E-value=0.00051 Score=57.43 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGH 355 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 355 (525)
...+..|.-++. .|++++|...|+-.+..+ ++.-+..||.++.. ++++++|+..|..|... ++|...
T Consensus 38 e~iY~~Ay~~y~----~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-----~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 38 DGLYAHAYEFYN----QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-----KKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcccCCCCcc
Confidence 345556666666 788888888888877654 66677777777765 56888888888877544 678888
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+..|.+|.. .++..+|...|+.+++.
T Consensus 109 f~agqC~l~----l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 109 FFTGQCQLL----MRKAAKARQCFELVNER 134 (165)
T ss_pred chHHHHHHH----hCCHHHHHHHHHHHHhC
Confidence 888888888 88888888888888775
No 178
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.79 E-value=0.00053 Score=54.19 Aligned_cols=98 Identities=19% Similarity=0.115 Sum_probs=82.9
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-----hHHHHHHHHHH
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL-G-----YEVAQSNAAWI 465 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-~-----~~~a~~~la~~ 465 (525)
-|.+... .++.+.|++.|.+++..-| +.++++.+..+..+|+.++|+.-+++|++. | -..++..-|.+
T Consensus 49 ~~valaE----~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 49 KAIALAE----AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHh----ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3555555 7899999999999999864 788999999999999999999999999987 3 23478888988
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHH
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIG 511 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 511 (525)
|.. .++-+.|..-|+.|++.|++-+-..|.
T Consensus 125 yRl----------------~g~dd~AR~DFe~AA~LGS~FAr~QLV 154 (175)
T KOG4555|consen 125 YRL----------------LGNDDAARADFEAAAQLGSKFAREQLV 154 (175)
T ss_pred HHH----------------hCchHHHHHhHHHHHHhCCHHHHHHHH
Confidence 877 667899999999999999877766554
No 179
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.76 E-value=0.0041 Score=53.99 Aligned_cols=122 Identities=16% Similarity=-0.022 Sum_probs=73.6
Q ss_pred HHHHhhhcCCCccCCHHHHHHHHHHH--HcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhh
Q 009801 129 VLGFLYGMGMMRERNKGKAFLYHHFA--AEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPI 206 (525)
Q Consensus 129 ~lg~~y~~g~g~~~d~~~A~~~~~~a--~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~ 206 (525)
..|..|-+ .|=...|.--|.++ +.+..+++.+.||..+...++++.|.+.|..+.+++|...
T Consensus 70 ERGvlYDS----lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~------------ 133 (297)
T COG4785 70 ERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN------------ 133 (297)
T ss_pred Hhcchhhh----hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch------------
Confidence 33444444 33444444445554 4567888999999999999999999999998888765431
Q ss_pred hhcccchhhhhHhhhccCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc
Q 009801 207 RIHNGAEENKGALRKSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (525)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (525)
....+.+.....-|++.-|.+-+.+- .++++|---..|=..- .+-|+++|..-+.+-.+.
T Consensus 134 ----Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E------~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 134 ----YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE------QKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred ----HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH------hhCCHHHHHHHHHHHHHh
Confidence 22344555555667777777666664 3445553322221111 123777777666554443
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.73 E-value=0.00095 Score=65.28 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=88.6
Q ss_pred cCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 334 KNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
+++++|+.++++..+.+ |++...|+.++.. .++..+|++.+.+++.. .+...+...+..+.. .++++.|
T Consensus 183 ~~~~~ai~lle~L~~~~-pev~~~LA~v~l~----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~~~lA 253 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERD-PEVAVLLARVYLL----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKKYELA 253 (395)
T ss_pred ccHHHHHHHHHHHHhcC-CcHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHH
Confidence 37888998888877654 7788888888888 78888999999998875 366677777777776 8889999
Q ss_pred HHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 412 TALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 412 ~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
+...+++++..| ...++.|+.+|...|++++|+..+..+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999876 568889999999999999999777644
No 181
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.032 Score=50.23 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009801 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIG 322 (525)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 322 (525)
-....-|.+|.+++ ++++|++...+. ++-++...=-.|..+ ..+.+-|.+.+++..+.++-..+..|+
T Consensus 109 i~~l~aa~i~~~~~-----~~deAl~~~~~~---~~lE~~Al~VqI~lk----~~r~d~A~~~lk~mq~ided~tLtQLA 176 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDG-----DFDEALKALHLG---ENLEAAALNVQILLK----MHRFDLAEKELKKMQQIDEDATLTQLA 176 (299)
T ss_pred HHHHHhhHHhhcCC-----ChHHHHHHHhcc---chHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 44555567777774 888888887762 222333333345555 667788888888877777777777788
Q ss_pred HHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 009801 323 YLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMF 398 (525)
Q Consensus 323 ~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y 398 (525)
..|..-... .+.+..|..+|+...+. ..+......+.+... ++++++|...++.+++. ++++.+.|+-.+-
T Consensus 177 ~awv~la~g-gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 177 QAWVKLATG-GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHhcc-chhhhhHHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 777531111 23678888888888774 345566677778888 88888888888888876 6778877776665
Q ss_pred HcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 399 HTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 399 ~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
.. ..++.+--.++..+.....|
T Consensus 252 ~~---~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 252 LH---LGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HH---hCCChHHHHHHHHHHHhcCC
Confidence 54 13333333444444444443
No 182
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0065 Score=59.02 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccc-hhhhhHhhhccCCcHHHHHHHHH
Q 009801 157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGA-EENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 157 ~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
.+.++++..-...+...|++.+|.+.+...-- .........-+....+ ++++|-+..+.+.++-+..+|++
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni--------~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~k 308 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI--------HKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLK 308 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhccc--------ccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHH
Confidence 36778888889999999999999988754311 0111111111223344 48999999999999999999999
Q ss_pred HHHc--------------------CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHc
Q 009801 236 QAQK--------------------GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYAR 291 (525)
Q Consensus 236 ~~~~--------------------~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 291 (525)
+... ..-+..|++|..|...+ ++..|.++|.+++.. .+|..|.+|+.++..
T Consensus 309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g-----rPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG-----RPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcC-----CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8641 13468899999999995 999999999999986 789999999998764
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.00074 Score=61.16 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----h
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----W 424 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~ 424 (525)
.|+.+.-+.. .+++..|...|..-++.- -++|+||||.++.. +++++.|...|..++...| +
T Consensus 144 ~Y~~A~~~~k----sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYK----SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCCh
Confidence 6778887777 888888888888877762 36788888888887 8888888888888877643 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++++.+|.+...+|+.++|...|++.++.
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 78888888888888888888888888776
No 184
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.66 E-value=0.0002 Score=69.57 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH---HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK---AFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~---a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
+++.+++++|..|.. .+++++|+..|+++++. ++.+ +++++|.+|.. .++.++|+.++++|++.
T Consensus 73 ~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 455666666666666 66666666666666665 3332 36666666665 66666666666666665
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.001 Score=60.30 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--- 385 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 385 (525)
+..-.++.+.-+.. .+++..|..-|+.-++. -.+.|+|+||.+++. +++++.|...|..+++.
T Consensus 140 ~~~~~Y~~A~~~~k-----sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 140 PATKLYNAALDLYK-----SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred chhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCC
Confidence 34447888887766 67999999999999976 257899999999999 99999999999999875
Q ss_pred --CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH
Q 009801 386 --GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS 425 (525)
Q Consensus 386 --~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 425 (525)
.-+++++.||.+... .++.++|...|++.++.-|..
T Consensus 211 s~KApdallKlg~~~~~----l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 211 SPKAPDALLKLGVSLGR----LGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred CCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCC
Confidence 357999999999998 999999999999999987643
No 186
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00086 Score=63.82 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
++.||+.+|.. .+++.+|+.+..+++.. +|..++|+-|.++.. .++++.|+..|+++++..|
T Consensus 259 ~~lNlA~c~lK----l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 259 CHLNLAACYLK----LKEYKEAIESCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HhhHHHHHHHh----hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhCC
Confidence 45566666666 66666666666666654 456666666666665 6666666666666666654
No 187
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.63 E-value=0.045 Score=49.33 Aligned_cols=209 Identities=21% Similarity=0.157 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHhcCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCc
Q 009801 262 DRTKALMWFSKAADKGE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR----QQLYSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~ 333 (525)
....+...+........ .......+..+.. .+++..+...+..... ......+..++..+.. .
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 108 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLK----LGRLEEALELLEKALELELLPNLAEALLNLGLLLEA-----L 108 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH----cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH-----H
Confidence 45555566666555432 4566667777776 7777777777777764 2355566667776654 3
Q ss_pred cCHHHHHHHHHHHHhCC--ChhHHHHHHH-HHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCc
Q 009801 334 KNYTKAKEYFEKAADNE--EAGGHYNLGV-MYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~-~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~y~~g~g~~ 405 (525)
+++.+++..+..+.... +.......+. ++.. .+++++|...|++++... ........+..+.. .
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 180 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYE----LGDYEEALELYEKALELDPELNELAEALLALGALLEA----L 180 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----h
Confidence 46777888888777642 3334444444 6777 788888888888776632 22333333443443 6
Q ss_pred CCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh--HHHHHHHHHHHhhhCCCccccCCCC
Q 009801 406 KNLHMATALYKLVAERGPW---SSLSRWALESYLKGDVGKAFLLYSRMAELGY--EVAQSNAAWILDKYGEGSMCMGESG 480 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~---~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~a~~~la~~~~~~~~~~~~~~~~~ 480 (525)
++++.|+..+.+++...+. .....++..+...+++++|+..+.++..... ......++..+..
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 248 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE------------ 248 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH------------
Confidence 6788888888888776543 5666777778888888888888888877643 3555666666653
Q ss_pred CCCChHhHHHHHHHHHHHHhCCC
Q 009801 481 FCTDAERHQCAHSLWWQASEQGN 503 (525)
Q Consensus 481 ~~~~~~~~~~A~~~~~~a~~~~~ 503 (525)
.+.++++...++++.+...
T Consensus 249 ----~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 249 ----LGRYEEALEALEKALELDP 267 (291)
T ss_pred ----cCCHHHHHHHHHHHHHhCc
Confidence 3356777777777766543
No 188
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.61 E-value=0.0081 Score=52.21 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=113.0
Q ss_pred hhHhhhccCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHc
Q 009801 216 KGALRKSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQSMEFLGEIYAR 291 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~ 291 (525)
.|.+|.+.|-..-|.--|.++ +.|..|++...||..+... +|++-|.+.|....+.+ +..+..+.|..+..
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a-----~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA-----GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhc-----ccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 455566666666666666664 5668899999999888766 49999999999988764 45677777776666
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHH-HHHHHHHHcCCCCcC
Q 009801 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH-YNLGVMYYKGIGVKR 370 (525)
Q Consensus 292 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~-~~lg~~y~~g~~~~~ 370 (525)
-|++.-|.+-+.+--..+..+....| ++|..- .+-|+.+|..-+.+=.+..+.+-| .++-..|.. .-
T Consensus 146 ----~gR~~LAq~d~~~fYQ~D~~DPfR~L-WLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg----ki 213 (297)
T COG4785 146 ----GGRYKLAQDDLLAFYQDDPNDPFRSL-WLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG----KI 213 (297)
T ss_pred ----cCchHhhHHHHHHHHhcCCCChHHHH-HHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh----hc
Confidence 67888888887777655432222222 333321 123777777665544443332222 122223332 11
Q ss_pred CHHHHHHHHHHHHH------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 371 DVKLACKYFLVAAN------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 371 ~~~~A~~~~~~a~~------~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
..+.+.+-...-++ .--.+.+++||..|.+ .|+.++|...|+.|+..+
T Consensus 214 S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~----~G~~~~A~~LfKLaiann 267 (297)
T COG4785 214 SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS----LGDLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHh
Confidence 11122111111111 1124678888888887 889999999999888775
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.60 E-value=0.029 Score=47.67 Aligned_cols=141 Identities=18% Similarity=0.121 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCccCHH
Q 009801 262 DRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ---QLYSAYNGIGYLYVKGYGVEKKNYT 337 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~ 337 (525)
|++..+.-..+.++. ....-.+.||..... .|++.+|...|++++.. +++..+..++...+. .+++.
T Consensus 71 dP~R~~Rea~~~~~~ApTvqnr~rLa~al~e----lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-----~~~~A 141 (251)
T COG4700 71 DPERHLREATEELAIAPTVQNRYRLANALAE----LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-----IQEFA 141 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHHHHHHHHHHHH----hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-----hccHH
Confidence 554444443333332 223445678888887 88888888888888764 466667777777665 45888
Q ss_pred HHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 338 KAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMAT 412 (525)
Q Consensus 338 ~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~ 412 (525)
.|...+++..+. ..|+....+|..|.. .+.+.+|...|+.++.. ..+.+....+.++.. +++..+|.
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa----~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~----qgr~~ea~ 213 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAA----QGKYADAESAFEVAISYYPGPQARIYYAEMLAK----QGRLREAN 213 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHh----cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH----hcchhHHH
Confidence 888888888766 367778888888888 88888888888888876 667777777777776 66666666
Q ss_pred HHHHHHH
Q 009801 413 ALYKLVA 419 (525)
Q Consensus 413 ~~~~~a~ 419 (525)
.-+....
T Consensus 214 aq~~~v~ 220 (251)
T COG4700 214 AQYVAVV 220 (251)
T ss_pred HHHHHHH
Confidence 5555443
No 190
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.017 Score=56.29 Aligned_cols=145 Identities=14% Similarity=0.037 Sum_probs=101.9
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHH---cCC-C-------HHHHHHHHHHHh
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA---EGG-N-------IQSKMAVAYTYL 171 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~---~~~-~-------~~a~~~la~~y~ 171 (525)
..+...+....+-+. ..+.+.+.+.-+..++- .||+.+|++.+-..- +.| . --..++||.+++
T Consensus 219 ~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~----~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~ 294 (696)
T KOG2471|consen 219 TRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYA----HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY 294 (696)
T ss_pred HHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH----hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence 444555555444432 44678888888888776 889999999987652 222 1 124578999999
Q ss_pred ccccHHHHHHHHHHHHHHHHhhhhcc--CCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc--CCHHHHHH
Q 009801 172 RQDMHDKAVKLYAELAEIAVNSFLIS--KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYK 247 (525)
Q Consensus 172 ~~~~~~~A~~~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~a~~~ 247 (525)
+.+.|.-+..+|.+++.......-.. +..-..-..-....+.++.|..+...|++..|++.|.+++.. .+|..|..
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLR 374 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLR 374 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHH
Confidence 99999999999999987332222111 111111111122345788999999999999999999999876 78999999
Q ss_pred HHHHHH
Q 009801 248 IGLFYY 253 (525)
Q Consensus 248 Lg~~y~ 253 (525)
|+.+..
T Consensus 375 lAEcCi 380 (696)
T KOG2471|consen 375 LAECCI 380 (696)
T ss_pred HHHHHH
Confidence 999874
No 191
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=97.58 E-value=0.00013 Score=44.70 Aligned_cols=36 Identities=36% Similarity=0.439 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCC
Q 009801 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN 159 (525)
Q Consensus 124 ~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~ 159 (525)
+.+++.||.+|..|.|++.|..+|+.||++|++.|+
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 468899999999999999999999999999998764
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.57 E-value=0.0048 Score=60.44 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHH
Q 009801 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKA 339 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A 339 (525)
+++.|+.++++..+.+ +.+...|+.++.. .++..+|++.+.+++... +.+.+..-+..+.. +++++.|
T Consensus 184 ~~~~ai~lle~L~~~~-pev~~~LA~v~l~----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-----k~~~~lA 253 (395)
T PF09295_consen 184 RYDEAIELLEKLRERD-PEVAVLLARVYLL----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-----KKKYELA 253 (395)
T ss_pred cHHHHHHHHHHHHhcC-CcHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----cCCHHHH
Confidence 5566666666654443 4455556666655 555566666666666543 44555555555544 4466666
Q ss_pred HHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 340 KEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 340 ~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
++..+++++. ++-.+|+.|+.+|.. .+++++|+..+..
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaLNs 293 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQ----LGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHh----cCCHHHHHHHHhc
Confidence 6666666655 345566666666666 6666666655554
No 193
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.52 E-value=0.065 Score=48.24 Aligned_cols=218 Identities=22% Similarity=0.166 Sum_probs=162.3
Q ss_pred CcHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCC
Q 009801 225 EDDEAFQILEYQAQKG----NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----KGEPQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~----~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~~~~ 296 (525)
....+...+....... ........+..+... +++..++..+..... ......+..++..+.. .
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 108 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKL-----GRLEEALELLEKALELELLPNLAEALLNLGLLLEA----L 108 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHc-----ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH----H
Confidence 4445555555555543 256777788888766 489999999998874 3556788888998888 8
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHH-HHHhCCCCCccCHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHcCCCC
Q 009801 297 RNYTKALEWLTHAARQQ--LYSAYNGIGY-LYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~-~~~~g~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~ 368 (525)
+++..++..+.++.... ........+. ++.. .+++++|...+++++... ........+..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 179 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYE-----LGDYEEALELYEKALELDPELNELAEALLALGALLEA---- 179 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----
Confidence 88999999999998753 3233344443 4544 469999999999997732 23344556666667
Q ss_pred cCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCHHHH
Q 009801 369 KRDVKLACKYFLVAANA--G-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~~~~~g~~~~A 443 (525)
.+++++++..+.++... . .......++..+.. .+++++|+..+.+++...+. .....++..+...++++++
T Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK----LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH----cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 88999999999999887 3 35788888989887 77899999999999998764 6677778878877789999
Q ss_pred HHHHHHHHHcChHHHHHHHHHHH
Q 009801 444 FLLYSRMAELGYEVAQSNAAWIL 466 (525)
Q Consensus 444 ~~~~~~a~~~~~~~a~~~la~~~ 466 (525)
...+.++...... ...++..+
T Consensus 256 ~~~~~~~~~~~~~--~~~~~~~~ 276 (291)
T COG0457 256 LEALEKALELDPD--LYNLGLAL 276 (291)
T ss_pred HHHHHHHHHhCcc--hhhhhHHH
Confidence 9999999887543 44444444
No 194
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.42 E-value=0.0015 Score=63.75 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=60.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--Chh---HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 311 RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAG---GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 311 ~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~---a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+.+++.+++++|..|.. .+++++|+..|+++++.+ +++ +++++|.+|.. +++.++|+..+++|++.
T Consensus 71 dP~~a~a~~NLG~AL~~-----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFS-----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 44589999999999987 789999999999999874 443 49999999999 99999999999999997
Q ss_pred CCH
Q 009801 386 GHQ 388 (525)
Q Consensus 386 ~~~ 388 (525)
.+.
T Consensus 142 sn~ 144 (453)
T PLN03098 142 YNL 144 (453)
T ss_pred cch
Confidence 433
No 195
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=97.42 E-value=0.00016 Score=45.30 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=31.0
Q ss_pred hHHHHHHH--HhhhcCC-CccCCHHHHHHHHHHHHcCCC
Q 009801 124 PHARSVLG--FLYGMGM-MRERNKGKAFLYHHFAAEGGN 159 (525)
Q Consensus 124 ~~a~~~lg--~~y~~g~-g~~~d~~~A~~~~~~a~~~~~ 159 (525)
++|++.|| .+|..|. |++.|.++|++||++|++.||
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 57889999 8889998 788899999999999998775
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.31 E-value=0.0092 Score=48.87 Aligned_cols=110 Identities=21% Similarity=0.121 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----hH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAELG-----YE 456 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~ 456 (525)
.+..++.-|.-... .+++++|++.++.....-| ..+.+.++.+++..+++++|+..+++.+++. -+
T Consensus 9 ~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 9 SPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 45566777777666 8899999999998877754 6788899999999999999999999999873 34
Q ss_pred HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 457 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
.|++..|.++....+..+...- +...++....+|+..|++.++.
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~-~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFF-RSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhc-ccccCcHHHHHHHHHHHHHHHH
Confidence 5788888777664321111111 4555677788999999988864
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.30 E-value=0.0011 Score=47.49 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
.+++++|+..|+++++..| ..+.+.++.++...|++++|...++++....
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5788888888888887764 6677788888888888888888888887763
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.29 E-value=0.0017 Score=47.15 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=41.8
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
..+|.. .+++++|++++++++..+| +..+...|.+++.+|++.+|+..++++++..
T Consensus 2 ~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQ----QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHh----CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 345555 7788888888888887765 4566677888888888888888888887763
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.0013 Score=47.09 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=42.0
Q ss_pred cCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 009801 223 RGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGE 287 (525)
Q Consensus 223 ~~~~~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 287 (525)
.|++++|++.|+++ ..|+++++.+.+|.+|...+ ++++|..++++++.. +++..+..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-----QYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT------HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 34445555555554 35688999999999999984 999999999998876 33555555544
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.23 E-value=0.058 Score=45.90 Aligned_cols=141 Identities=10% Similarity=0.019 Sum_probs=109.7
Q ss_pred CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCCH
Q 009801 224 GEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 224 ~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
=+++.......+..+. -...-.+.||....+.| ++.+|..+|++++.- +++..+..++...+. .+++
T Consensus 70 ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elG-----r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa----~~~~ 140 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQNRYRLANALAELG-----RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA----IQEF 140 (251)
T ss_pred cChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhh-----hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh----hccH
Confidence 3444444444333322 33445677888888774 999999999999875 788899999999998 9999
Q ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-CChhHHHHHHHHHHcCCCCcCCHHH
Q 009801 300 TKALEWLTHAARQQ----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKL 374 (525)
Q Consensus 300 ~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~~~~~ 374 (525)
..|...++...+.+ .++....+|..+.. .|.+..|...|+.+++. ..+.+-...+.++.. +++..+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-----~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~----qgr~~e 211 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-----QGKYADAESAFEVAISYYPGPQARIYYAEMLAK----QGRLRE 211 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-----cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH----hcchhH
Confidence 99999999998764 67788889999976 56899999999999987 677888888888888 887777
Q ss_pred HHHHHHHH
Q 009801 375 ACKYFLVA 382 (525)
Q Consensus 375 A~~~~~~a 382 (525)
|..-+...
T Consensus 212 a~aq~~~v 219 (251)
T COG4700 212 ANAQYVAV 219 (251)
T ss_pred HHHHHHHH
Confidence 76655443
No 201
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.21 E-value=0.04 Score=56.32 Aligned_cols=209 Identities=16% Similarity=0.076 Sum_probs=111.7
Q ss_pred HHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC---------C----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Q 009801 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG---------N----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (525)
Q Consensus 127 ~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---------~----~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~ 193 (525)
+-.-|.+|.. ..|+++|+++|++.-.-+ . ..---..|..+.+.|+++.|+..|-++-.....
T Consensus 664 ydkagdlfek----i~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka- 738 (1636)
T KOG3616|consen 664 YDKAGDLFEK----IHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA- 738 (1636)
T ss_pred HHhhhhHHHH----hhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH-
Confidence 3345566666 778899999987642211 1 122234566677788999999888765322111
Q ss_pred hhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 009801 194 FLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGA-MYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (525)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a-~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (525)
...-.....+.+|+.++...-+...... +-.++.-|... ++++.|.++|.+
T Consensus 739 -----------------------ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~-----~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 739 -----------------------IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANK-----GDFEIAEELFTE 790 (1636)
T ss_pred -----------------------HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccc-----hhHHHHHHHHHh
Confidence 1112234566778887776666544333 33455555444 588888888877
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhC-------CCCCccCHHHHHHH
Q 009801 273 AADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLY---VKG-------YGVEKKNYTKAKEY 342 (525)
Q Consensus 273 a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~---~~g-------~~~~~~~~~~A~~~ 342 (525)
+---.++ -.+|-. .+++..|.++-++.-..... .-..++..- ..| ..++.+.+++|++.
T Consensus 791 ~~~~~da------i~my~k----~~kw~da~kla~e~~~~e~t-~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqm 859 (1636)
T KOG3616|consen 791 ADLFKDA------IDMYGK----AGKWEDAFKLAEECHGPEAT-ISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQM 859 (1636)
T ss_pred cchhHHH------HHHHhc----cccHHHHHHHHHHhcCchhH-HHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHH
Confidence 5332221 123333 55565555444443222111 111111110 011 11234567777777
Q ss_pred HHHHHh---------CC----ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 343 FEKAAD---------NE----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383 (525)
Q Consensus 343 ~~~a~~---------~~----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~ 383 (525)
|.+--. .. -.+..-.+|.-|.. .++.+.|...|.+|-
T Consensus 860 ydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~----~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEA----EGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHh----ccChhHHHHHHHhhh
Confidence 766421 11 23455667777777 778777777665543
No 202
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=97.21 E-value=0.00093 Score=40.79 Aligned_cols=32 Identities=44% Similarity=0.672 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
+++.||.+|..|.|+.+|.++|+.||++|++.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 34444444444444444444444444444443
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.12 E-value=0.0031 Score=45.81 Aligned_cols=62 Identities=19% Similarity=-0.008 Sum_probs=53.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHH
Q 009801 431 ALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHA 506 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 506 (525)
..++...+++++|+.++++++.. +++.++...|.++.. .+++++|+..++++++.+ ++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----------------~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ----------------LGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH----------------hccHHHHHHHHHHHHHHCCCcHHH
Confidence 46789999999999999999987 578899999999998 789999999999999865 4444
Q ss_pred HH
Q 009801 507 AL 508 (525)
Q Consensus 507 ~~ 508 (525)
..
T Consensus 66 ~~ 67 (73)
T PF13371_consen 66 RA 67 (73)
T ss_pred HH
Confidence 33
No 204
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.03 E-value=0.02 Score=46.92 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=74.8
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---C--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA---G--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-- 423 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-- 423 (525)
.+..++.-|.-..+ .+++.+|++.|+..-.. | -..+...|+.+|.. .+++++|+..+++-+++.|
T Consensus 9 ~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC
Confidence 45667777777778 88999999988886654 1 35788889999987 8899999999999998875
Q ss_pred ---hHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHc
Q 009801 424 ---WSSLSRWALESYLKGD---------------VGKAFLLYSRMAEL 453 (525)
Q Consensus 424 ---~~a~~~l~~~~~~~g~---------------~~~A~~~~~~a~~~ 453 (525)
+-+++..|.+++.+.. ..+|+..|++.+..
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 4578888888887765 77777777777765
No 205
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.2 Score=44.72 Aligned_cols=43 Identities=9% Similarity=-0.026 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHc---CC-----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 009801 406 KNLHMATALYKLVAER---GP-----WSSLSRWALESYLKGDVGKAFLLYS 448 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~---~~-----~~a~~~l~~~~~~~g~~~~A~~~~~ 448 (525)
.++++|+..|++++.. +. .+-+-..+.++.+...+++|-..+.
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 4555555555555432 11 1122234445555555555544443
No 206
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=97.01 E-value=0.0012 Score=41.13 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=19.7
Q ss_pred HHHHHHH--HHHHcCC-CCcCCHHHHHHHHHHHHHcC
Q 009801 389 KAFYQLA--KMFHTGV-GLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 389 ~a~~~l~--~~y~~g~-g~~~~~~~A~~~~~~a~~~~ 422 (525)
.++++|| .+|..|. |+.+|.++|+.||++|++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4555666 5555555 45556666666666665544
No 207
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.97 E-value=0.14 Score=46.38 Aligned_cols=182 Identities=20% Similarity=0.241 Sum_probs=104.7
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh--cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCH
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI 160 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~ 160 (525)
..++-+|..|...+. .+|+++|...|++... |..+. ..
T Consensus 32 ~p~~~LY~~g~~~L~-------~gn~~~A~~~fe~l~~~~p~s~~---------------------------------~~ 71 (254)
T COG4105 32 LPASELYNEGLTELQ-------KGNYEEAIKYFEALDSRHPFSPY---------------------------------SE 71 (254)
T ss_pred CCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHcCCCCcc---------------------------------cH
Confidence 447778888887776 7777777777776431 22211 23
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
.++..++..+...++++.|+...++.+.+.|.+ ++
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~---------------------------------------------~n 106 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH---------------------------------------------PN 106 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC---------------------------------------------CC
Confidence 567777888888888888888888776653332 23
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHH---HHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKA---LMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLY 315 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A---~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~ 315 (525)
..-+++..|.++........+|..-+ +.-|+..+.. ++.-+ .|-+.=+..++..+ +
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya---------------~dA~~~i~~~~d~L----A 167 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA---------------PDAKARIVKLNDAL----A 167 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch---------------hhHHHHHHHHHHHH----H
Confidence 35567777887777765555665444 4444444442 11100 01111111111111 1
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYNLGVMYYKGIGVKRDVKLACK 377 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~~~~~A~~ 377 (525)
.--..+|..|.. .+.+..|+..++..++. ...+++..+...|.. .+-.++|..
T Consensus 168 ~~Em~IaryY~k-----r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~----lgl~~~a~~ 225 (254)
T COG4105 168 GHEMAIARYYLK-----RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA----LGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHHHH-----hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH----hCChHHHHH
Confidence 112446666765 45777777777777765 234566777777777 666666654
No 208
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.11 Score=46.34 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GE-------PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--- 312 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~-------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 312 (525)
.+..-+..|... +++++|...+.+|++- .+ +.++-..+.+... ...+.++..+|++|+..
T Consensus 33 ~yekAAvafRnA-----k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake----~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNA-----KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE----LSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHH
Confidence 333444555544 5899999999999853 11 3455666667776 78899999999999754
Q ss_pred -CC----HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC---CC-----hhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 313 -QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EE-----AGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 313 -~~----~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---~~-----~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
|. +.++-.-|.+... .++++|+++|++++.. ++ .+-+...+.++.+ .+.+.+|...+
T Consensus 104 ~GspdtAAmaleKAak~len------v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~a~ 173 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALEN------VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAATAF 173 (308)
T ss_pred hCCcchHHHHHHHHHHHhhc------CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHHHH
Confidence 43 3355666677755 3999999999999754 22 2234456777777 78888887777
Q ss_pred HHHHHc----C--CHHHHHHHH--HHHHcCCCCcCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCHHHHHH
Q 009801 380 LVAANA----G--HQKAFYQLA--KMFHTGVGLKKNLHMATALYKLVAERGP------WSSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 380 ~~a~~~----~--~~~a~~~l~--~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~l~~~~~~~g~~~~A~~ 445 (525)
.+-... . +...-..++ .+|.. ..|+..|...|+...+.+. ..+..+|- ..|..||.++.-.
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~----~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL-~ayd~gD~E~~~k 248 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLY----AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL-TAYDEGDIEEIKK 248 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhh----HHHHHHHHHHhcchhcCccccChHHHHHHHHHH-HHhccCCHHHHHH
Confidence 653211 1 111122333 33343 5699999999999876642 23333443 3678888887765
Q ss_pred HHH
Q 009801 446 LYS 448 (525)
Q Consensus 446 ~~~ 448 (525)
...
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 553
No 209
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.96 E-value=0.15 Score=56.33 Aligned_cols=192 Identities=13% Similarity=0.031 Sum_probs=146.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE----------PQSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~----------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
.|+..-.+...-..+.+. .+.++|.+..++|+..=| --|+.+|-.. -|.-+.-.+.|+
T Consensus 1454 sPNSSi~WI~YMaf~Lel-----sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~-------yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLEL-----SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA-------YGTEESLKKVFE 1521 (1710)
T ss_pred CCCcchHHHHHHHHHhhh-----hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh-------hCcHHHHHHHHH
Confidence 345554444443344444 489999999999986421 1233333333 346777889999
Q ss_pred HHHHcCC-HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 308 HAARQQL-YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (525)
Q Consensus 308 ~a~~~~~-~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~ 384 (525)
+|++..+ ...+..|..+|.. .+.+++|.++|++.++. .....|..+|..+.+ ..+-+.|...+.+|+.
T Consensus 1522 RAcqycd~~~V~~~L~~iy~k-----~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1522 RACQYCDAYTVHLKLLGIYEK-----SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHhcchHHHHHHHHHHHHH-----hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHHHHHHh
Confidence 9998865 5678888999986 34899999999999876 478899999999999 8888888999999986
Q ss_pred c----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 385 A----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 385 ~----~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
. .|.+...-.+.+-+. .+|.+.+...|+-.+...| .+-|.-+...-...|+.+.++..|++++..+
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk----~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFK----YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhh----cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 5 477777777777776 8999999999998888875 5566666777778899999999999999875
No 210
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.96 E-value=0.41 Score=53.08 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChh-HHHHHHHHHHc
Q 009801 296 ERNYTKALEWLTHAARQQ----------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAG-GHYNLGVMYYK 364 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~y~~ 364 (525)
..+.++|.+..++|+..= .-.|+.||-..| |.-+.-.+.|++|++..++. .+..|..+|..
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y--------G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k 1542 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY--------GTEESLKKVFERACQYCDAYTVHLKLLGIYEK 1542 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh--------CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 679999999999998641 234555555555 35567788999999987764 67789999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHhcC
Q 009801 365 GIGVKRDVKLACKYFLVAANA-G-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WSSLSRWALESYLKG 438 (525)
Q Consensus 365 g~~~~~~~~~A~~~~~~a~~~-~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~~g 438 (525)
...+++|.++|+..++. + ....|..++..+.. ..+-+.|...+++|+..-| .+....-+.+-+..|
T Consensus 1543 ----~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1543 ----SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred ----hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 89999999999998877 4 67788888888886 6667889999999997754 455566788899999
Q ss_pred CHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC----CHHHHHHHHHHH
Q 009801 439 DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG----NEHAALLIGDAY 514 (525)
Q Consensus 439 ~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y 514 (525)
|-+.++..|+-.+...+-..-.+..++-.. ++ .++.+.+...|++++..+ ...-.|..=.-|
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~e-------ik-------~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDME-------IK-------HGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHH-------Hc-------cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 999999999988876432222233333322 11 345678999999999876 233444444455
Q ss_pred HcccccCC
Q 009801 515 YYGRVRHS 522 (525)
Q Consensus 515 ~~g~g~~~ 522 (525)
+.-.|.++
T Consensus 1681 Ek~~Gde~ 1688 (1710)
T KOG1070|consen 1681 EKSHGDEK 1688 (1710)
T ss_pred HHhcCchh
Confidence 55555543
No 211
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.86 E-value=0.34 Score=43.89 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
..+.-+++-|..-++. +|+++|+..|+...... ...++..++..+.. .+++++|+...++-+...
T Consensus 32 ~p~~~LY~~g~~~L~~-----gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 32 LPASELYNEGLTELQK-----GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCC
Confidence 3466677777777777 49999999999887652 25788889998888 889999999988888752
Q ss_pred ----CHHHHHHHHHHHHhCCCCCccCHHHHH---HHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 314 ----LYSAYNGIGYLYVKGYGVEKKNYTKAK---EYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 314 ----~~~a~~~lg~~~~~g~~~~~~~~~~A~---~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
-.-+++..|..++.+......|...+. .-|+..++. .|.+ +=+...-.+.....
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS------------------~Ya~dA~~~i~~~~ 163 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNS------------------RYAPDAKARIVKLN 163 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCC------------------cchhhHHHHHHHHH
Confidence 344677777777766544333444333 333333332 1110 00000000111111
Q ss_pred CHHH--HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 387 HQKA--FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 387 ~~~a--~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+..+ -..+|..|.. .+.+..|+..++..++.-+ .+++..+..+|+.+|-.++|... .+.+..+
T Consensus 164 d~LA~~Em~IaryY~k----r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N 233 (254)
T COG4105 164 DALAGHEMAIARYYLK----RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHHHHHH----hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhc
Confidence 1111 2345777877 8889999999999988742 56788888888888888887643 3344443
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.83 E-value=0.061 Score=54.75 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHH---H-H----HHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHH
Q 009801 294 GVERNYTKALEWLTHAARQQLYS---A-Y----NGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYY 363 (525)
Q Consensus 294 ~~~~~~~~A~~~~~~a~~~~~~~---a-~----~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~ 363 (525)
|..+|.+.+++.+.++.+.++.. + + +........+......+.+.|.+.++..... +.+--.+.-|.++.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34778888888888887765321 1 1 1122222222200244777888888877764 44455567788888
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh---HHHHHHHHHH
Q 009801 364 KGIGVKRDVKLACKYFLVAANAG------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW---SSLSRWALES 434 (525)
Q Consensus 364 ~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~~l~~~~ 434 (525)
. .++.++|+..|++++... +.-..+.++.++.. ..++++|..++.+..+.+.+ .-.|..|..+
T Consensus 279 ~----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 279 L----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred H----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 8 888888888888877431 34467777888876 88899998888888877642 2344667778
Q ss_pred HhcCCH-------HHHHHHHHHHHH
Q 009801 435 YLKGDV-------GKAFLLYSRMAE 452 (525)
Q Consensus 435 ~~~g~~-------~~A~~~~~~a~~ 452 (525)
...|+. ++|..++.++-.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 888877 777777776643
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.78 E-value=0.0038 Score=40.11 Aligned_cols=40 Identities=20% Similarity=-0.024 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
.++..+|.++...|++++|+.+|+++++. +++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45677788888888888888888888766 56777776663
No 214
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.62 E-value=0.0021 Score=38.58 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=24.4
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHH
Q 009801 414 LYKLVAERGP--WSSLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 414 ~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~ 444 (525)
+|++|++.+| +.+++++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3678888864 678888888888888888875
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.56 E-value=0.16 Score=51.67 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=109.3
Q ss_pred ccCHHHHHHHHHHHHhCCChhHH--------HHHHHHHHcCC-CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC
Q 009801 333 KKNYTKAKEYFEKAADNEEAGGH--------YNLGVMYYKGI-GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTG 401 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~~~~a~--------~~lg~~y~~g~-~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g 401 (525)
.||-+.++..+.++.+.++..+- +.+.....-+. +...+.+.|...+...... +..--.+.-|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~- 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL- 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 35999999999999987543321 22333333332 1367788888888888775 556666777888887
Q ss_pred CCCcCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-hHHH--HHHHHHHHhhhCCC
Q 009801 402 VGLKKNLHMATALYKLVAERG------PWSSLSRWALESYLKGDVGKAFLLYSRMAELG-YEVA--QSNAAWILDKYGEG 472 (525)
Q Consensus 402 ~g~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~a--~~~la~~~~~~~~~ 472 (525)
.++.++|+++|++++... +.-.++.+++.+..+.++++|..++.+..+.. ...+ .+..|.++...|+.
T Consensus 280 ---~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 280 ---KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred ---hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 999999999999988543 23467799999999999999999999999873 3333 34466666664331
Q ss_pred ccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 473 SMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
.......++|..+++++-.
T Consensus 357 ---------~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 357 ---------EEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ---------hhhhhhHHHHHHHHHHHHH
Confidence 1112344888888887653
No 216
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.48 E-value=0.0081 Score=38.57 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLA 395 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~ 395 (525)
.++..+|..|.. .+++++|+..|+++++. +++.++..+|
T Consensus 2 ~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRR----LGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 345555555555 55555555555555544 4455554444
No 217
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.46 E-value=0.092 Score=45.26 Aligned_cols=93 Identities=16% Similarity=0.057 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
-.=|.-++. .+++.+|..-|..|++.=. .-.+.+.|.+... .+..+.|+.-..+|++++| ..|
T Consensus 99 K~EGN~~F~----ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 99 KKEGNELFK----NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHhhh----cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHHHHHHhhHhcCchhHHH
Confidence 345666677 8999999999999987622 2234455666665 7888999999999999986 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcChH
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAELGYE 456 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 456 (525)
+.+.+.+|-.+..+++|+.-|++.++.+..
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 788899999999999999999999887543
No 218
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.40 E-value=0.0052 Score=36.82 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
.+++.+|.+|...+++++|+..|+++++++|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5677888888888888888888888877654
No 219
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.39 E-value=0.31 Score=50.23 Aligned_cols=258 Identities=15% Similarity=0.077 Sum_probs=135.3
Q ss_pred hHhHHHHHHHHHHHHhcCChH-HHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDPH-ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLY 183 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y 183 (525)
.+.+.+|+..+...-++.... .+-.++.-|.+ .+|++.|.++|.++-..++ --++|.+.|++..|.++-
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan----~~dfe~ae~lf~e~~~~~d------ai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYAN----KGDFEIAEELFTEADLFKD------AIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhcc----chhHHHHHHHHHhcchhHH------HHHHHhccccHHHHHHHH
Confidence 566899999888765554433 34467888888 8999999999988743222 234566666666666554
Q ss_pred HHHHHHHHhhhhccCCCCCchhhhhc-ccchhhhhHhhhccCCcHHHHHHHHHH---------HHcC----CHHHHHHHH
Q 009801 184 AELAEIAVNSFLISKDSPVIEPIRIH-NGAEENKGALRKSRGEDDEAFQILEYQ---------AQKG----NAGAMYKIG 249 (525)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~---------~~~~----~~~a~~~Lg 249 (525)
.+........... +...-.+. .+.......+|..-|.+++|++.|.+. +... -.+....+|
T Consensus 815 ~e~~~~e~t~~~y-----iakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~ 889 (1636)
T KOG3616|consen 815 EECHGPEATISLY-----IAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFA 889 (1636)
T ss_pred HHhcCchhHHHHH-----HHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHH
Confidence 4331110000000 00000000 011122334455566667777776663 1221 234566677
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc----C--CCCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 009801 250 LFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYAR----G--AGVERNYTKALEWLTHAARQQ-LYSAYNGIG 322 (525)
Q Consensus 250 ~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~----g--~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg 322 (525)
.-|... ++.+.|...|-+|-+-..+.-++.-..++.. . .|..+-.+...-.+-+++-.. -...++..|
T Consensus 890 ~e~e~~-----g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~g 964 (1636)
T KOG3616|consen 890 KELEAE-----GDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHG 964 (1636)
T ss_pred HHHHhc-----cChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhh
Confidence 777655 4999999888776442211111111111111 0 000111111111111111110 111223333
Q ss_pred HHHHh-CCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 323 YLYVK-GYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 323 ~~~~~-g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
.+... ......+.++-|..+-+.+++...+..+..++..+.. .+++++|-+.|-.+++++
T Consensus 965 ll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~led----egk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 965 LLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLED----EGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhh----ccchhhhhHhhHHHhhcc
Confidence 33211 1111234667777777777777788888999999998 999999999998888774
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.33 E-value=0.43 Score=47.28 Aligned_cols=139 Identities=13% Similarity=-0.015 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---CCH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA---GHQ 388 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~ 388 (525)
-+...|+.+... .|+.++|++.++..++. ++-....+|-.++.. .+.+.++...+.+--+. +.+
T Consensus 260 y~KrRLAmCark-----lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 260 YAKRRLAMCARK-----LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hhHHHHHHHHHH-----hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHHHHHhccccCCchH
Confidence 345678888776 56899999999998864 234577888899999 99999998888875443 233
Q ss_pred HHHHHHHHHHHcCCCC------------cCCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHhcCCHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGL------------KKNLHMATALYKLVAERGPWSSLSRWAL--------ESYLKGDVGKAFLLYS 448 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~------------~~~~~~A~~~~~~a~~~~~~~a~~~l~~--------~~~~~g~~~~A~~~~~ 448 (525)
...+.-+.+-....+. .-....|++...+|++.+|-..-+.|+. .....|| .||+.|--
T Consensus 331 ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf 409 (539)
T PF04184_consen 331 TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAF 409 (539)
T ss_pred HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHH
Confidence 4344434333222211 1123457899999999987555554443 1333443 67766654
Q ss_pred HHHHc--ChHHHHHHHHH
Q 009801 449 RMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 449 ~a~~~--~~~~a~~~la~ 464 (525)
-.+.. ..+.|++.|--
T Consensus 410 ~hL~hWk~veGAL~lL~~ 427 (539)
T PF04184_consen 410 FHLQHWKRVEGALNLLHC 427 (539)
T ss_pred HHHHHHhcCHhHHHHHHH
Confidence 44433 23334444433
No 221
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=1.2 Score=43.83 Aligned_cols=376 Identities=12% Similarity=0.010 Sum_probs=214.0
Q ss_pred HhhcCChHhHHHHHHHHHHHHh--cC---ChHHHHHHHHh-hhcCCCccCCHHHHHHHHHHHHcC----C-----CHHHH
Q 009801 99 AVTNGDVRVMEEATSEVESAAM--EG---DPHARSVLGFL-YGMGMMRERNKGKAFLYHHFAAEG----G-----NIQSK 163 (525)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~-y~~g~g~~~d~~~A~~~~~~a~~~----~-----~~~a~ 163 (525)
+.+...+.+..++++.++.... +. .+.....||.+ +.. ..|.+.|...+++|... + .-++.
T Consensus 16 ~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~y----T~N~elAksHLekA~~i~~~ip~fydvKf~a~ 91 (629)
T KOG2300|consen 16 HFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRY----TKNVELAKSHLEKAWLISKSIPSFYDVKFQAA 91 (629)
T ss_pred HHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHcccccHHhhhhHHH
Confidence 3456668899999999988542 22 25566788885 334 78999999999999642 1 23677
Q ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCH
Q 009801 164 MAVAYTYLRQD-MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA 242 (525)
Q Consensus 164 ~~la~~y~~~~-~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 242 (525)
..|+.+|.... .++.+...++++++........ .......+..+.....++..|++.+.--++.-++
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w------------sckllfQLaql~~idkD~~sA~elLavga~sAd~ 159 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW------------SCKLLFQLAQLHIIDKDFPSALELLAVGAESADH 159 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh------------hHHHHHHHHHHHhhhccchhHHHHHhccccccch
Confidence 88999998876 8889999999998875432211 1122345667777888999998886554333221
Q ss_pred ------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCH------H-HHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 243 ------GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP------Q-SMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 243 ------~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~------~-a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
...+.+.......-+....+..++..--.+..+. +++ . -+..+-..|+.-.|..+--..+++.++
T Consensus 160 ~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ 239 (629)
T KOG2300|consen 160 ICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQ 239 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHH
Confidence 2233333222211001111233333333333332 222 1 112233333332222333444555555
Q ss_pred HHHHcCCH-----------------------HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-------C-ChhHHH
Q 009801 308 HAARQQLY-----------------------SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------E-EAGGHY 356 (525)
Q Consensus 308 ~a~~~~~~-----------------------~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-------~-~~~a~~ 356 (525)
+.+....+ +....|-..-..-.+...|-+++|.++-.+++.. + ......
T Consensus 240 ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srils 319 (629)
T KOG2300|consen 240 DSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILS 319 (629)
T ss_pred HHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 55542111 0111111111111123455778888887777643 1 333333
Q ss_pred --------HHHHHHHcCCCCcCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 009801 357 --------NLGVMYYKGIGVKRDVKLACKYFLVAANA------------GHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416 (525)
Q Consensus 357 --------~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~ 416 (525)
++..+-.- .+++.+|++......+- -.+....-+|..... .+.++.|..-|.
T Consensus 320 m~km~~LE~iv~c~lv----~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s----v~~~enAe~hf~ 391 (629)
T KOG2300|consen 320 MFKMILLEHIVMCRLV----RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS----VNCYENAEFHFI 391 (629)
T ss_pred HHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh----cchHHHHHHHHH
Confidence 34444444 78888888766554431 123445556666655 789999999999
Q ss_pred HHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------hHHHHHHHHHHHhhhCCCccccCCCCCC
Q 009801 417 LVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAELG---------YEVAQSNAAWILDKYGEGSMCMGESGFC 482 (525)
Q Consensus 417 ~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------~~~a~~~la~~~~~~~~~~~~~~~~~~~ 482 (525)
.|...-+ .....+++.+|...|+-+.-.+.++..-..+ ...+.+-.|...+.
T Consensus 392 ~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~-------------- 457 (629)
T KOG2300|consen 392 EATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK-------------- 457 (629)
T ss_pred HHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH--------------
Confidence 9987753 3345688999999887665555444432221 12234444444444
Q ss_pred CChHhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009801 483 TDAERHQCAHSLWWQASEQGNEHAALLIGDAY 514 (525)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 514 (525)
++++.||..+.++.++..|.+-.++|--++
T Consensus 458 --qn~lnEaK~~l~e~Lkmanaed~~rL~a~~ 487 (629)
T KOG2300|consen 458 --QNDLNEAKRFLRETLKMANAEDLNRLTACS 487 (629)
T ss_pred --hccHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 789999999999999877655555544443
No 222
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.31 E-value=0.01 Score=35.44 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++.+|.+++.+|++++|+.+|+++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666777777777777777777777665
No 223
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.28 E-value=0.014 Score=49.49 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCc
Q 009801 408 LHMATALYKLVAERGP--WSSLSRWALESYLKG----------DVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGS 473 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g----------~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~ 473 (525)
++.|.+.++.....+| ++++++.|.++..+- -+++|+.-|++|+.. +..+|++++|..|..+|..-
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3555566665555553 344555555555432 233444444444443 45567777777776543210
Q ss_pred cccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 474 MCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 474 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
... ......+++|..+|++|++.+
T Consensus 87 ~d~-----~~A~~~F~kA~~~FqkAv~~~ 110 (186)
T PF06552_consen 87 PDT-----AEAEEYFEKATEYFQKAVDED 110 (186)
T ss_dssp --H-----HHHHHHHHHHHHHHHHHHHH-
T ss_pred CCh-----HHHHHHHHHHHHHHHHHHhcC
Confidence 000 001245677777777776654
No 224
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.27 E-value=0.0066 Score=36.28 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
.+++.+|.++...|++++|++.|++++++.|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4667777777777777777777777776543
No 225
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.23 E-value=0.012 Score=35.18 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++++|.++..+|++++|+.+|++|++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 226
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.20 E-value=0.051 Score=46.21 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHh--CCChhHHHHHHHHHHcCC------CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC--
Q 009801 336 YTKAKEYFEKAAD--NEEAGGHYNLGVMYYKGI------GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVG-- 403 (525)
Q Consensus 336 ~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~------~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g-- 403 (525)
++.|.+.++.... ..+++++++.|..+..-. ....-+++|+.=|+.|+.+ +...+++++|.+|..--.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3456666665443 357788888888776610 0012345566666666655 577899999988754110
Q ss_pred -----CcCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009801 404 -----LKKNLHMATALYKLVAERGPWSSLSRWALES 434 (525)
Q Consensus 404 -----~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~ 434 (525)
....+++|..+|++|++.+|.+..++.+.-.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 1134788899999999999988877666533
No 227
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.18 E-value=0.012 Score=35.83 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=23.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 009801 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (525)
Q Consensus 162 a~~~la~~y~~~~~~~~A~~~y~~~~~~~ 190 (525)
++.+||.+|...|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56788999999999999999999976543
No 228
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.00 E-value=0.014 Score=35.47 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++.+||.++...|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678899999999999999999997643
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.99 E-value=1.7 Score=42.29 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-- 312 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-- 312 (525)
+++...+|=..|... +||+.-+++.+..-.. ..+...+..|..+.+- ...||.++|+..+..++..
T Consensus 140 s~div~~lllSyRdi-----qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr-n~~gdre~Al~il~~~l~~~~ 213 (374)
T PF13281_consen 140 SPDIVINLLLSYRDI-----QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR-NKPGDREKALQILLPVLESDE 213 (374)
T ss_pred ChhHHHHHHHHhhhh-----hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHHhccC
Confidence 455666666677655 6888888888776544 2445566666665552 2378999999999886654
Q ss_pred -CCHHHHHHHHHHHHhC----CCCCccCHHHHHHHHHHHHhCC
Q 009801 313 -QLYSAYNGIGYLYVKG----YGVEKKNYTKAKEYFEKAADNE 350 (525)
Q Consensus 313 -~~~~a~~~lg~~~~~g----~~~~~~~~~~A~~~~~~a~~~~ 350 (525)
.+++.+..+|.+|..- ........++|+.+|.++-+..
T Consensus 214 ~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 214 NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 3788899999988531 1112235677777777776654
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.92 E-value=1.5 Score=42.56 Aligned_cols=172 Identities=13% Similarity=0.104 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC---
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--- 349 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--- 349 (525)
+....+|=..|.. .+||+.-+++.+..-... .+...+..|..+.+.. ..|+.++|+..+..++..
T Consensus 141 ~div~~lllSyRd----iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn--~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 141 PDIVINLLLSYRD----IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN--KPGDREKALQILLPVLESDEN 214 (374)
T ss_pred hhHHHHHHHHhhh----hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc--cCCCHHHHHHHHHHHHhccCC
Confidence 4455566667887 889998888887765442 4556677777775432 256999999999996644
Q ss_pred CChhHHHHHHHHHHcCC-----CCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH-----
Q 009801 350 EEAGGHYNLGVMYYKGI-----GVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLV----- 418 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~-----~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a----- 418 (525)
.+++.+..+|.+|..-. ......++|+.||.++-+.. +...-.|++.++... ..+++...+.-+..
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~---g~~~~~~~el~~i~~~l~~ 291 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA---GHDFETSEELRKIGVKLSS 291 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc---CCcccchHHHHHHHHHHHH
Confidence 57889999999987631 12445899999999998874 334445556555431 11222221211111
Q ss_pred --HHcC---ChH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHH
Q 009801 419 --AERG---PWS---SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQS 460 (525)
Q Consensus 419 --~~~~---~~~---a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~ 460 (525)
.+.+ +.. ....+..+....||+++|+.+++++.... +.+|+
T Consensus 292 llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W~ 340 (374)
T PF13281_consen 292 LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAWE 340 (374)
T ss_pred HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccchh
Confidence 1222 111 23356667888999999999999999884 44454
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.79 E-value=0.81 Score=45.45 Aligned_cols=154 Identities=15% Similarity=0.034 Sum_probs=102.1
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--------------CC---------
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--------------GN--------- 159 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--------------~~--------- 159 (525)
..|.++-++.-++|. .++.++|+..|+.-... ...+|.++|++|++. |.
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd 254 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEEAS------TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD 254 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc------CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence 445666667667754 66789999999975443 678999999998641 11
Q ss_pred ----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHH
Q 009801 160 ----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 160 ----~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
.-+...||++..+.|+.++|++.++.+++..+... .-++..++...+...+.+.++...+.+
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~--------------~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD--------------NLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc--------------hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 24567899999999999999999999987543211 113456777778888999999888887
Q ss_pred HHHc---CCHHHHHHHHHHHHhcCC-----------CCccCHHHHHHHHHHHHhcCC
Q 009801 236 QAQK---GNAGAMYKIGLFYYFGLR-----------GLRRDRTKALMWFSKAADKGE 278 (525)
Q Consensus 236 ~~~~---~~~~a~~~Lg~~y~~~~~-----------~~~~~~~~A~~~~~~a~~~~~ 278 (525)
-.+. ..+..+|.-+.+-.+... |.......|++...+|++.+.
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 5432 345555555554433310 111123457777888877543
No 232
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.71 E-value=0.011 Score=35.38 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=20.8
Q ss_pred HHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 009801 270 FSKAADK--GEPQSMEFLGEIYARGAGVERNYTKAL 303 (525)
Q Consensus 270 ~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~ 303 (525)
|++|++. +++.++++||.+|.. .|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~----~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN----QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence 5566553 677777777777777 77777765
No 233
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.60 E-value=0.037 Score=51.58 Aligned_cols=93 Identities=19% Similarity=0.142 Sum_probs=63.9
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHH
Q 009801 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQL 394 (525)
Q Consensus 319 ~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 394 (525)
-.-|.-|+. +|.|++|+.+|.+++.. .++..+.+.+..|+. .+.+..|..-...|+.++ ...++.+.
T Consensus 101 KE~GN~yFK-----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 101 KERGNTYFK-----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred HHhhhhhhh-----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 344555554 66788888888777765 366677777777777 777777777777776653 44566666
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCCh
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (525)
+..-.. .++..+|.+-++.++++.|.
T Consensus 172 ~~AR~~----Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 172 MQARES----LGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHH----HhhHHHHHHhHHHHHhhCcc
Confidence 666655 67777777777777777654
No 234
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.58 E-value=0.24 Score=42.78 Aligned_cols=93 Identities=17% Similarity=0.044 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChh-H
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAG-G 354 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~-a 354 (525)
+...++..+.. .+++++|+..++.++... .+-+-.+|+.+... .+.+++|++.+....+.+... .
T Consensus 91 aaL~lAk~~ve----~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-----~~k~D~AL~~L~t~~~~~w~~~~ 161 (207)
T COG2976 91 AALELAKAEVE----ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-----QKKADAALKTLDTIKEESWAAIV 161 (207)
T ss_pred HHHHHHHHHHh----hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHhccccccHHHHH
Confidence 34556666666 778888888888777543 23345667777665 557888887776655554333 3
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
....|+++.. .++.++|...|+++++.+
T Consensus 162 ~elrGDill~----kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 162 AELRGDILLA----KGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHhhhHHHH----cCchHHHHHHHHHHHHcc
Confidence 4456888888 888888888888888774
No 235
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.97 Score=39.12 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC-HHH
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL-YSA 317 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-~~a 317 (525)
+...++..+... +++++|+..++.++.. .+ +-+-.+|+.+... ++.+++|+..+....+.+. +..
T Consensus 91 aaL~lAk~~ve~-----~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~ 161 (207)
T COG2976 91 AALELAKAEVEA-----NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIV 161 (207)
T ss_pred HHHHHHHHHHhh-----ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHH
Confidence 445566666655 5999999999999865 22 3466789999999 9999999999888766653 344
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG 354 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a 354 (525)
.-..|.++.. +|+.++|+.-|+++++.+...+
T Consensus 162 ~elrGDill~-----kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 162 AELRGDILLA-----KGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHhhhHHHH-----cCchHHHHHHHHHHHHccCChH
Confidence 5667888876 7799999999999998854443
No 236
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.47 E-value=0.033 Score=33.19 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
.+++.+|.+|...|++++|++.|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567777788888888888888887777654
No 237
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.92 Score=41.10 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA------- 385 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------- 385 (525)
...+.+..++.. .+.+.-.+..+.+.++.+ +|.....||.+-.+ -+|.+-|..++++.-+.
T Consensus 178 ~Vmy~~~~~llG-----~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 178 RVMYSMANCLLG-----MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHhc-----chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhhcc
Confidence 445555555543 458999999999999875 45677889999999 99999999999865422
Q ss_pred -CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----hHH
Q 009801 386 -GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG-----YEV 457 (525)
Q Consensus 386 -~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~~ 457 (525)
+......+.+.+|.. .+|+..|...|.+.+..++ +.+.++-+.++...|+..+|++..+.+++.. +..
T Consensus 249 q~~~~V~~n~a~i~lg----~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es 324 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLG----QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHES 324 (366)
T ss_pred chhHHHHhhhhhheec----ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhh
Confidence 234455666777765 8999999999999998885 5566688889999999999999999998874 334
Q ss_pred HHHHHHHHHh
Q 009801 458 AQSNAAWILD 467 (525)
Q Consensus 458 a~~~la~~~~ 467 (525)
..+||-.+|.
T Consensus 325 ~~~nL~tmyE 334 (366)
T KOG2796|consen 325 VLFNLTTMYE 334 (366)
T ss_pred HHHHHHHHHH
Confidence 5555666664
No 238
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.36 E-value=0.02 Score=33.77 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
+|++.+|.++...|++++|+..|+++++.-|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 4788899999999999999999999887543
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.53 Score=42.61 Aligned_cols=143 Identities=12% Similarity=0.122 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHH
Q 009801 264 TKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (525)
Q Consensus 264 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~ 340 (525)
+..++.++|-+ ..+++.+..++.- .+.|.-.+..+.+.++.. .+.-...||.+-.. -||.+.|.
T Consensus 166 ESsv~lW~KRl----~~Vmy~~~~~llG----~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-----~GD~k~a~ 232 (366)
T KOG2796|consen 166 ESSIRLWRKRL----GRVMYSMANCLLG----MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-----IGDIKTAE 232 (366)
T ss_pred hhHHHHHHHHH----HHHHHHHHHHHhc----chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-----cccHHHHH
Confidence 33444444433 3567777777776 899999999999999875 56677888888866 57999999
Q ss_pred HHHHHHHhC--------CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHH
Q 009801 341 EYFEKAADN--------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHM 410 (525)
Q Consensus 341 ~~~~~a~~~--------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~ 410 (525)
.+|++.-+. +.--...+.+.+|.- .+++..|...|.+.+..+ ++.+.++-+.+... .++...
T Consensus 233 ~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg----~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY----lg~l~D 304 (366)
T KOG2796|consen 233 KYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG----QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY----LGKLKD 304 (366)
T ss_pred HHHHHHHHHHhhhhccchhHHHHhhhhhheec----ccchHHHHHHHhhccccCCCchhhhchHHHHHHH----HHHHHH
Confidence 999965432 234456678888888 999999999999988774 56677777877776 889999
Q ss_pred HHHHHHHHHHcCChHHH
Q 009801 411 ATALYKLVAERGPWSSL 427 (525)
Q Consensus 411 A~~~~~~a~~~~~~~a~ 427 (525)
|++-.+.+++..|..+.
T Consensus 305 AiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 305 ALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHHhccCCccch
Confidence 99999999999874443
No 240
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.30 E-value=0.24 Score=42.83 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=66.2
Q ss_pred ccCHHHHHHHHHHHHhCCC-------hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCC
Q 009801 333 KKNYTKAKEYFEKAADNEE-------AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g 403 (525)
.|++++|..-|..|++.-. +-.+.+-|-+... ++..+.|+.-..+|++++ +..|+.+.+.+|..
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek--- 180 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAIEDCSKAIELNPTYEKALERRAEAYEK--- 180 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh---
Confidence 4577777777777776521 2234456666777 788889999999999885 56788888999988
Q ss_pred CcCCHHHHHHHHHHHHHcCChHHHH
Q 009801 404 LKKNLHMATALYKLVAERGPWSSLS 428 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~~~a~~ 428 (525)
...++.|++-|++..+.+|..-..
T Consensus 181 -~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 181 -MEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred -hhhHHHHHHHHHHHHHhCcchHHH
Confidence 789999999999999998755443
No 241
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.18 E-value=0.18 Score=45.32 Aligned_cols=83 Identities=13% Similarity=-0.072 Sum_probs=59.5
Q ss_pred CcCCHHHHHHHHHHHHHc----C-C----hHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHc--------ChHHHH
Q 009801 404 LKKNLHMATALYKLVAER----G-P----WSSLSRWALESYLKGDVGKAFLLYSRM-------AEL--------GYEVAQ 459 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~----~-~----~~a~~~l~~~~~~~g~~~~A~~~~~~a-------~~~--------~~~~a~ 459 (525)
...++++|++.|+.|+-. + + +..+.++||+|-.+|+.+....++++| .+. +....+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 367888888888888633 1 1 335568899999888855555555444 432 235688
Q ss_pred HHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 460 SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 460 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+.+|.+..+ .+++++|++||.+.+...
T Consensus 169 YLigeL~rr----------------lg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRR----------------LGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHH----------------hCCHHHHHHHHHHHHcCC
Confidence 889999988 557899999999999866
No 242
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.01 E-value=0.12 Score=48.23 Aligned_cols=92 Identities=14% Similarity=0.029 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRW 430 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l 430 (525)
.-.-|.-|+. ++.|++|+.+|.+++.. -++..+.+.+..|.. .+.+..|..-+..|+.++ ...|+.+.
T Consensus 100 iKE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 100 IKERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred HHHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 3456888999 99999999999999887 367778899999998 899999999999999887 47899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 431 ALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+.+-..+|+..+|.+-++.++++.
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhC
Confidence 999999999999999999999874
No 243
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.97 E-value=0.062 Score=31.97 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++.+|.++..+|++++|+.+|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778888888888888888888888875
No 244
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.77 E-value=0.37 Score=43.23 Aligned_cols=28 Identities=18% Similarity=0.012 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+.+|.+..+.|++++|..||.+.+..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4455566666666666666666666544
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.58 E-value=1.2 Score=37.24 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+...++..+.. .+++++|+.++++++..+| ..++..+-.++...|+..+|+..|++....
T Consensus 62 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3456667777776 8999999999999999986 557888899999999999999999988643
No 246
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=7 Score=38.88 Aligned_cols=61 Identities=18% Similarity=0.047 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHH
Q 009801 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 173 ~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
.|-+++|.++-++++.............+++..+.+ ....+......-.|++.+|++....
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km--~~LE~iv~c~lv~~~~~~al~~i~d 348 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM--ILLEHIVMCRLVRGDYVEALEEIVD 348 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH--HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 467788888888887664433222222222222221 1122333334455666666655544
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.91 E-value=5.8 Score=37.40 Aligned_cols=65 Identities=14% Similarity=-0.014 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
..+..|+.+|... +.....++|....+.+-+. ++....+.|..-...+ ..+.+.+.+.+.+.+..
T Consensus 85 ~iL~~La~~~l~~--~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEW--DTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHh
Confidence 4566788888777 3445666777777766443 4544445444444432 56777777777777654
No 248
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.89 E-value=0.098 Score=30.71 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++++++|.++...|++++|+..|++.++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46788899999999999999999888765
No 249
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.59 E-value=7.4 Score=37.62 Aligned_cols=178 Identities=15% Similarity=0.029 Sum_probs=87.8
Q ss_pred hHhHHHHHHHHHHHHh--cCChHHHH--HHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHh---ccccH
Q 009801 105 VRVMEEATSEVESAAM--EGDPHARS--VLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQS-KMAVAYTYL---RQDMH 176 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~~~a~~--~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a-~~~la~~y~---~~~~~ 176 (525)
.||-..|.+.-+++.+ ..+.+.+. .-+..-.- .|+++.|.+-|+-.++ +++. +..|--+|+ ..|+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~----eG~~~~Ar~kfeAMl~--dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALL----EGDYEDARKKFEAMLD--DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHh----cCchHHHHHHHHHHhc--ChHHHHHhHHHHHHHHHhcccH
Confidence 4556666666666432 12322222 22222222 6777888777776664 2222 122222333 25778
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-----CC---HHHHHHH
Q 009801 177 DKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-----GN---AGAMYKI 248 (525)
Q Consensus 177 ~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~---~~a~~~L 248 (525)
+-|..+-+++.+..+...+. ....-.-.+..|+++.|+++.+..... +. ..+...-
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA----------------~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWA----------------ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHHHHHHHhhccCCchH----------------HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 88888877776654443211 112222345667777777777664221 11 1111111
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 249 GLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 249 g~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
+..-.. ..-|...|...-.++.++ +...+-..-+..++. .++..++-..++.+-+.
T Consensus 235 AkA~s~----ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 235 AKAMSL----LDADPASARDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHHH----hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhhhHHHHHHhc
Confidence 111111 112555666666565554 334444555555555 66666666666665544
No 250
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.59 E-value=2.3 Score=40.14 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhCC--ChhHHHHHHHH-HHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHH
Q 009801 335 NYTKAKEYFEKAADNE--EAGGHYNLGVM-YYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLH 409 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~-y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~ 409 (525)
..+.|...|++|.+.. ....+...|.+ |.. .++.+.|...|+++++. .+...+......+.. .++.+
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~----~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~ 87 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYC----NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDIN 87 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT----CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHH
Confidence 4666666666666443 34455555555 333 45555566666666655 333333333333333 55666
Q ss_pred HHHHHHHHHHHcCChH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 410 MATALYKLVAERGPWS-----SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 410 ~A~~~~~~a~~~~~~~-----a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.|...|++++..-+.. .+......-...|+.+.....++++.+.
T Consensus 88 ~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 88 NARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666543211 2223333344456666666666665554
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.07 E-value=2.2 Score=35.64 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
...+...++..+... +++++|+.++++++.. -+..++..+-.+|.. .|+..+|+..|++...
T Consensus 61 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 YLDALERLAEALLEA-----GDYEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 345666777777666 4899999999988765 456788888888888 8899999998888753
No 252
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.39 Score=42.80 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHH
Q 009801 335 NYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM 410 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~ 410 (525)
.+..|+..|.+|+-.+ .+.-+.+-+.+|++ .++++....--++|++. +...+++.+|..... .+.++.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~----s~~~~e 96 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ----SKGYDE 96 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh----hccccH
Confidence 5555666666555443 22233455555555 55555555555555555 234455555555554 555555
Q ss_pred HHHHHHHHHH
Q 009801 411 ATALYKLVAE 420 (525)
Q Consensus 411 A~~~~~~a~~ 420 (525)
|+..+++|..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 253
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.95 E-value=0.25 Score=30.79 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++.++|.++...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999998764
No 254
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.79 E-value=4.7 Score=38.07 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHH
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHY 356 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 356 (525)
+|..+.....+ .+..+.|...|++|.+.+ ....+...|.+-.. ..+|.+.|.+.|+++++. .+...+.
T Consensus 3 v~i~~m~~~~r----~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~----~~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRR----TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY----CNKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH----TCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH----hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 45566666777 778999999999998664 46777777777443 134788899999999987 5677777
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHH---HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQK---AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~---a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (525)
.....+.. .++.+.|...|++++.. .... ..+..=.-|+. ..|+.+.....++++.+.-+.
T Consensus 75 ~Y~~~l~~----~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~---~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 75 EYLDFLIK----LNDINNARALFERAISSLPKEKQSKKIWKKFIEFES---KYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHH----TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH---HHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHH----hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhh
Confidence 77788888 89999999999999876 2222 22222222333 257888888888888887554
No 255
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=20 Score=39.35 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
+.|..+..||..-.+++ ...+|++-|-+| ++|..+...-.+..+ .+.+++=++++..|-+
T Consensus 1102 n~p~vWsqlakAQL~~~-----~v~dAieSyika---dDps~y~eVi~~a~~----~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGG-----LVKDAIESYIKA---DDPSNYLEVIDVASR----TGKYEDLVKYLLMARK 1161 (1666)
T ss_pred CChHHHHHHHHHHHhcC-----chHHHHHHHHhc---CCcHHHHHHHHHHHh----cCcHHHHHHHHHHHHH
Confidence 45666666666666663 566666666433 455555555555555 6666666666666543
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.35 E-value=12 Score=36.55 Aligned_cols=149 Identities=15% Similarity=0.036 Sum_probs=91.8
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER--- 421 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~--- 421 (525)
....+..++.+... .+.++.|...+.++...+ .+.....-+.+... .++..+|+..++..++.
T Consensus 145 ~~~~~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 145 LAETWLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhh
Confidence 34556666666666 677777777777666544 45555555555555 56666666666666551
Q ss_pred C---------------------------------ChHHHHHHHHHHHhc------CCHHHHHHHHHHHHHc--ChHHHHH
Q 009801 422 G---------------------------------PWSSLSRWALESYLK------GDVGKAFLLYSRMAEL--GYEVAQS 460 (525)
Q Consensus 422 ~---------------------------------~~~a~~~l~~~~~~~------g~~~~A~~~~~~a~~~--~~~~a~~ 460 (525)
. ...++..+|...... ++.++++..|.+|++. ....++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 0 023455566655566 7899999999999987 4667899
Q ss_pred HHHHHHhhhCCCccccCCCCC-CCChHhHHHHHHHHHHHHhCCCHHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGF-CTDAERHQCAHSLWWQASEQGNEHAA 507 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~~~~a~ 507 (525)
.+|..+++.-+.........- ....+-...|+..|-+|+..|+..+.
T Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~ 344 (352)
T PF02259_consen 297 SWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVR 344 (352)
T ss_pred HHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchH
Confidence 999999774221110000000 01133446699999999998865333
No 257
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.96 E-value=0.36 Score=30.05 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
.++.+||.+|...|++++|+.+++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 5788999999999999999999999987643
No 258
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.93 E-value=1.7 Score=37.96 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhcCC
Q 009801 369 KRDVKLACKYFLVAAN---AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG------PWSSLSRWALESYLKGD 439 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~---~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~~~~~~g~ 439 (525)
...-+.|..-|.++.. ...++.++.||..|. ..|.++|+..+-++++.. +++....|+.+++.+|+
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-----krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-----KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455677777766543 368899999999987 589999999999999774 36678899999999999
Q ss_pred HHHHHHH
Q 009801 440 VGKAFLL 446 (525)
Q Consensus 440 ~~~A~~~ 446 (525)
++.|.-|
T Consensus 194 ~e~AYiw 200 (203)
T PF11207_consen 194 YEQAYIW 200 (203)
T ss_pred hhhhhhh
Confidence 9998765
No 259
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.81 Score=40.87 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=67.3
Q ss_pred CCccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCc
Q 009801 258 GLRRDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~ 333 (525)
.+++.+..|+..|-+|+..+ .+.-+.+-+.+|++ .++++.+..-.++|++.. ...+.+.+|.+... .
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-----s 91 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-----S 91 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-----h
Confidence 34568899999999998764 44556778888988 889999999999998874 67788999998876 4
Q ss_pred cCHHHHHHHHHHHHhC
Q 009801 334 KNYTKAKEYFEKAADN 349 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~ 349 (525)
..+++|++.+++|.+.
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 5889999999999654
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.50 E-value=20 Score=37.50 Aligned_cols=82 Identities=10% Similarity=0.095 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL 358 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 358 (525)
..++.++|..+.. ...+++|.++|.+.-... +...++.+ ..++++-..+-++. ..+.+.+-.+
T Consensus 796 e~A~r~ig~~fa~----~~~We~A~~yY~~~~~~e------~~~ecly~-----le~f~~LE~la~~L--pe~s~llp~~ 858 (1189)
T KOG2041|consen 796 EDAFRNIGETFAE----MMEWEEAAKYYSYCGDTE------NQIECLYR-----LELFGELEVLARTL--PEDSELLPVM 858 (1189)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHhccchH------hHHHHHHH-----HHhhhhHHHHHHhc--CcccchHHHH
Confidence 4677888888877 778888888888764332 12222222 11222222111111 1466677778
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHH
Q 009801 359 GVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 359 g~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
|.++.+ .+..++|++.|-+
T Consensus 859 a~mf~s----vGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 859 ADMFTS----VGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHh----hchHHHHHHHHHh
Confidence 888888 8888888877654
No 261
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=2.6 Score=37.90 Aligned_cols=86 Identities=12% Similarity=-0.003 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHHHc----------CC----------CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCC
Q 009801 141 ERNKGKAFLYHHFAAE----------GG----------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~----------~~----------~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~ 200 (525)
.+++++|...|+.|+. ++ ..+-+.+.+.+++..++|-++++....++.
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~------------ 258 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR------------ 258 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh------------
Confidence 6778888887777752 12 335567777778777887777777666644
Q ss_pred CCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCH
Q 009801 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP 279 (525)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~ 279 (525)
..+++..|++.-|..+..-. |..+|..-|.++++.+.+
T Consensus 259 ------------------------------------~~~~nvKA~frRakAhaa~W-----n~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 ------------------------------------HHPGNVKAYFRRAKAHAAVW-----NEAEAKADLQKVLELDPS 296 (329)
T ss_pred ------------------------------------cCCchHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHhcChh
Confidence 35577888999888887765 889999999999887643
No 262
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=29 Score=38.18 Aligned_cols=193 Identities=17% Similarity=0.095 Sum_probs=117.0
Q ss_pred hhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 009801 216 KGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGV 295 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~ 295 (525)
.+.+-...+-+++|+..|++--- +..|...|-. .. ++.+.|.++-++ .+.+..|..+|..-.+
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~--n~~A~~VLie---~i-----~~ldRA~efAe~---~n~p~vWsqlakAQL~---- 1116 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM--NVSAIQVLIE---NI-----GSLDRAYEFAER---CNEPAVWSQLAKAQLQ---- 1116 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc--cHHHHHHHHH---Hh-----hhHHHHHHHHHh---hCChHHHHHHHHHHHh----
Confidence 34444556677888888876321 2222222211 11 366666665444 3668899999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-CChhHHHHHHHHHHcCCCCcCCHHH
Q 009801 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKL 374 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~~~~~ 374 (525)
.+...+|++.|-+| +++..+..+-..-.. .+++++-++++..|-+. ..+..-..|-..|.. .++..+
T Consensus 1117 ~~~v~dAieSyika---dDps~y~eVi~~a~~-----~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk----t~rl~e 1184 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA---DDPSNYLEVIDVASR-----TGKYEDLVKYLLMARKKVREPYIDSELIFAYAK----TNRLTE 1184 (1666)
T ss_pred cCchHHHHHHHHhc---CCcHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH----hchHHH
Confidence 78889999888764 677777777777665 46999999999988765 233334444445555 444444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 375 A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
-..+ +...+.--.-..|.-... .+.|+.|.-+|.-. .-+..|+..+..+|+|..|...-++|-
T Consensus 1185 lE~f----i~gpN~A~i~~vGdrcf~----~~~y~aAkl~y~~v------SN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1185 LEEF----IAGPNVANIQQVGDRCFE----EKMYEAAKLLYSNV------SNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHH----hcCCCchhHHHHhHHHhh----hhhhHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3332 222122222334443333 56777776666432 335567778888888888877766663
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=12 Score=34.82 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHH
Q 009801 141 ERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAE 185 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~ 185 (525)
.++...|...|+.+... ++..+...|+.+|...|+.+.|...+..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 44556666666655543 3455666666666666666666555544
No 264
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.54 E-value=2.5 Score=37.06 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC------ChhHHHHHHHHHHcCCCC
Q 009801 298 NYTKALEWLTHAARQ---QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE------EAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 298 ~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~~~ 368 (525)
+-+.|..-|.++-.. ..++.++.||..|.. .|.++++.++.++++.. +++.+..|+.+|..
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k------rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~---- 190 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTK------RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK---- 190 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----
Confidence 445577666666443 367888888888854 38888888888887652 56677788888888
Q ss_pred cCCHHHHHHH
Q 009801 369 KRDVKLACKY 378 (525)
Q Consensus 369 ~~~~~~A~~~ 378 (525)
.+++++|.-|
T Consensus 191 ~~~~e~AYiw 200 (203)
T PF11207_consen 191 LKNYEQAYIW 200 (203)
T ss_pred hcchhhhhhh
Confidence 8888877654
No 265
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.40 E-value=4.5 Score=31.96 Aligned_cols=81 Identities=16% Similarity=0.015 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHHHHHcC---C-----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------C------hHH
Q 009801 405 KKNLHMATALYKLVAERG---P-----------WSSLSRWALESYLKGDVGKAFLLYSRMAEL-------G------YEV 457 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~---~-----------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~------~~~ 457 (525)
.+-+++|..-+++|.+.. | .-.+..|+..+..+|+|++++..-++++.. . -..
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 567888888888887652 1 224557788899999999988888888742 1 234
Q ss_pred HHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 458 AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 458 a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
+.++-|..+.. .++.++|+..|+++.++
T Consensus 102 aVfsra~Al~~----------------~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEG----------------LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHH----------------TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----------------cCChHHHHHHHHHHHHH
Confidence 55666777766 56889999999998763
No 266
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.25 E-value=0.47 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++.+|.++...|++++|+.+++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45678888888888899998888888765
No 267
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=3.6 Score=38.77 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
-.=|.-|.. .++|..|+..|.+.+.. ++ +..+.|.+.+-.. .+|+..|+.-..+|+..+| ..++
T Consensus 85 KeeGN~~fK----~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l~Dcs~al~~~P~h~Ka~ 156 (390)
T KOG0551|consen 85 KEEGNEYFK----EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSALNDCSAALKLKPTHLKAY 156 (390)
T ss_pred HHHhHHHHH----hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhcCcchhhhh
Confidence 345777777 78888888888888765 22 3344555555554 6788888888888887764 5677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++-+.+++.+.++++|..|.+..+..
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 77788888888888888888777655
No 268
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=89.50 E-value=0.81 Score=42.34 Aligned_cols=78 Identities=18% Similarity=0.057 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHH
Q 009801 87 GSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQS 162 (525)
Q Consensus 87 a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a 162 (525)
+-..-++..+..+.+....|+.++|..+|+-+ ..|.+++++..+|.+-.. .++.-+|-.+|-+|+. .+|.+|
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCchHH
Confidence 33444444454444555578899999999985 478899999999998887 7889999999999865 578877
Q ss_pred HHHHHH
Q 009801 163 KMAVAY 168 (525)
Q Consensus 163 ~~~la~ 168 (525)
+.+-+.
T Consensus 187 LvnR~R 192 (472)
T KOG3824|consen 187 LVNRAR 192 (472)
T ss_pred Hhhhhc
Confidence 766543
No 269
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.72 E-value=1.4 Score=44.59 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHH
Q 009801 369 KRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A 443 (525)
.++...|+..+..|.... ......+|+.+... .+-...|-..+.+++.+.. +-.++.+|..+..+.+...|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 444445555544444331 11223344444433 2233344444444444432 22333444444445555555
Q ss_pred HHHHHHHHHc
Q 009801 444 FLLYSRMAEL 453 (525)
Q Consensus 444 ~~~~~~a~~~ 453 (525)
++.+++|++.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 5555555443
No 270
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.63 E-value=0.73 Score=25.43 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYS 448 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~ 448 (525)
.+.+.+|.++...|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888887765
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.23 E-value=15 Score=31.33 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=76.9
Q ss_pred cCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCccC
Q 009801 261 RDRTKALMWFSKAADKGE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKN 335 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~ 335 (525)
+..++|+.-|...-+-|. .-+.+..|.+..+ +++...|+..|..+.... .|.....++++-.-=.-+..+.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 367778888877766532 3467778888887 888888888888876543 3333333333211000022456
Q ss_pred HHHHHHHHHHHHhCCCh---hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHH
Q 009801 336 YTKAKEYFEKAADNEEA---GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQKAFYQLA 395 (525)
Q Consensus 336 ~~~A~~~~~~a~~~~~~---~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~ 395 (525)
|+....-.+.....+++ .+--.||..-.+ .+++.+|..||.+.++- +-+....+.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~~~F~qia~Da~aprnirqRA 207 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAKSWFVQIANDAQAPRNIRQRA 207 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHHHHHHHHHccccCcHHHHHHH
Confidence 76666665555444433 355667777777 78888888888877654 3343333333
No 272
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.00 E-value=0.75 Score=25.89 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
++.+|.++.. .+++++|+.+++++++.
T Consensus 4 ~~~~a~~~~~----~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLK----LGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHH----HhhHHHHHHHHHHHHcc
Confidence 4445555554 45555555555555443
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.88 E-value=14 Score=37.27 Aligned_cols=84 Identities=13% Similarity=0.157 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH
Q 009801 157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (525)
Q Consensus 157 ~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 236 (525)
.+++.-+..||...+.+|+++-|.+.|+++-+ ...+..+|...|+.++-.+..+.+
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------------------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD------------------------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------------------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------------------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 35667777888888888888888888877633 233444556666655544444444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (525)
...++....+.-+.+. +|.++.++.+.+
T Consensus 400 ~~~~~~n~af~~~~~l--------gd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGDINIAFQAALLL--------GDVEECVDLLIE 427 (443)
T ss_dssp HHTT-HHHHHHHHHHH--------T-HHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHc--------CCHHHHHHHHHH
Confidence 4455544444433332 366666655544
No 274
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.65 E-value=1.8 Score=43.81 Aligned_cols=83 Identities=18% Similarity=0.096 Sum_probs=48.8
Q ss_pred ccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCC
Q 009801 333 KKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKN 407 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~ 407 (525)
.||...|+++++.|.... ......+|+.+... .+-...|-.++.+++.+. .+.-.+-+|.+|.. .+|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~----l~~ 691 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA----LKN 691 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHHHHHHHHHhhcccCchHHHhcchhHHH----Hhh
Confidence 446666666666665442 22344566666665 555556666666666553 34445555666665 666
Q ss_pred HHHHHHHHHHHHHcCC
Q 009801 408 LHMATALYKLVAERGP 423 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~ 423 (525)
.++|++.++.|++..+
T Consensus 692 i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTT 707 (886)
T ss_pred hHHHHHHHHHHHhcCC
Confidence 6666666666666653
No 275
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.65 E-value=24 Score=35.77 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
++.-|..||..... +++.+-|..+|++
T Consensus 346 ~~~~W~~Lg~~AL~----~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALR----QGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHH----TTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHh
Confidence 34444445555444 4455555444444
No 276
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.65 E-value=29 Score=33.81 Aligned_cols=286 Identities=14% Similarity=0.066 Sum_probs=184.1
Q ss_pred cCCHHHHHHHHHHHHcC--CCHHHHHHH--HHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhh
Q 009801 141 ERNKGKAFLYHHFAAEG--GNIQSKMAV--AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK 216 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~--~~~~a~~~l--a~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (525)
-||-..|.+.-.++... .+.+.+..| +..-+-.|+++.|.+-|+-.+.-.... ..+ ...+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtR-----------llG-----LRgL 160 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETR-----------LLG-----LRGL 160 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHH-----------HHh-----HHHH
Confidence 77888998888887642 344444333 556666899999999998775421110 000 1122
Q ss_pred hHhhhccCCcHHHHHHHHHHHHc--CCHHHHH-HHHHHHHhcCCCCccCHHHHHHHHHHHHhc-----CCH---HHHHHH
Q 009801 217 GALRKSRGEDDEAFQILEYQAQK--GNAGAMY-KIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEP---QSMEFL 285 (525)
Q Consensus 217 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~a~~-~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~---~a~~~L 285 (525)
..--...|..+.|+.+-+.+... .-+-+.. .|...+..+ |++.|+++....... +.+ .+-..-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g------dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG------DWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 22235789999999998887665 3343333 344444333 999999998875432 211 122221
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHHHHHHHH
Q 009801 286 GEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMY 362 (525)
Q Consensus 286 g~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y 362 (525)
+..-.. +.-|...|...-.++.+.. ...+...-+..++. .++..++-+.++.+-+.. +|+ ++.+|
T Consensus 235 AkA~s~---ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-----d~~~rKg~~ilE~aWK~ePHP~----ia~lY 302 (531)
T COG3898 235 AKAMSL---LDADPASARDDALEANKLAPDLVPAAVVAARALFR-----DGNLRKGSKILETAWKAEPHPD----IALLY 302 (531)
T ss_pred HHHHHH---hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-----ccchhhhhhHHHHHHhcCCChH----HHHHH
Confidence 221111 2457888888888887763 56666666777766 568999999999988763 333 34445
Q ss_pred HcCCCCcCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHh
Q 009801 363 YKGIGVKRDVKLACKYFLVA-----ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-SSLSRWALESYL 436 (525)
Q Consensus 363 ~~g~~~~~~~~~A~~~~~~a-----~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-~a~~~l~~~~~~ 436 (525)
.. .+.-+.++.-++++ ++.++.++...++..-.. .+++..|..--+.+....+- .++..++.+-..
T Consensus 303 ~~----ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld----a~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeA 374 (531)
T COG3898 303 VR----ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD----AGEFSAARAKAEAAAREAPRESAYLLLADIEEA 374 (531)
T ss_pred HH----hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh----ccchHHHHHHHHHHhhhCchhhHHHHHHHHHhh
Confidence 44 22223333333333 344788888888888776 78999999999999888874 455677877665
Q ss_pred c-CCHHHHHHHHHHHHHcChHHHHHHHHHHHhh
Q 009801 437 K-GDVGKAFLLYSRMAELGYEVAQSNAAWILDK 468 (525)
Q Consensus 437 ~-g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~ 468 (525)
. ||-.+...|+.+++...-..++...|.....
T Consensus 375 etGDqg~vR~wlAqav~APrdPaW~adg~vse~ 407 (531)
T COG3898 375 ETGDQGKVRQWLAQAVKAPRDPAWTADGVVSEA 407 (531)
T ss_pred ccCchHHHHHHHHHHhcCCCCCcccccCccccc
Confidence 4 9999999999999987555566666655444
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.54 E-value=7.3 Score=33.80 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---- 349 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---- 349 (525)
-.++..+|..|.. .||.++|++.|.++.+.. ..+.++.+-.+... .+|+.....+..++-..
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-----~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-----FGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHhcc
Confidence 3567778888888 888888888888876543 23333444443332 34777777776666432
Q ss_pred CChhHH----HHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 350 EEAGGH----YNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 350 ~~~~a~----~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
++.+.. ..-|..+.. .+++.+|...|-.+
T Consensus 107 ~d~~~~nrlk~~~gL~~l~----~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLA----QRDFKEAAELFLDS 139 (177)
T ss_pred chHHHHHHHHHHHHHHHHH----hchHHHHHHHHHcc
Confidence 222211 223444444 55666655555443
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.53 E-value=17 Score=31.07 Aligned_cols=124 Identities=18% Similarity=0.132 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhCC----ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCH-----HHHHHHHHHHHcCCCC
Q 009801 335 NYTKAKEYFEKAADNE----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQ-----KAFYQLAKMFHTGVGL 404 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~-----~a~~~l~~~y~~g~g~ 404 (525)
..++|+.-|....+.+ ..-+.+..|.+..+ .++...|+.+|..+..- ..| .+...-+.++..
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD---- 144 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD---- 144 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc----
Confidence 5667777776666553 23356777888888 88888888888876654 222 233334445554
Q ss_pred cCCHHHHHHHHHHHHHcC-C--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-ChHHHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERG-P--WSSLSRWALESYLKGDVGKAFLLYSRMAEL-GYEVAQSNAAWIL 466 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~-~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~a~~~la~~~ 466 (525)
.+.|+.-..-.+....-+ + ..+--.||..-++.|++.+|..||.+.+.- +.|...-+-+.+.
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~m 210 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIM 210 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHH
Confidence 666666555444333222 2 335557888899999999999999888764 3444444444433
No 279
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.09 E-value=9.6 Score=34.43 Aligned_cols=63 Identities=22% Similarity=0.086 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
..+.+...+++. .+++-+++..-...+.. ++..|++..|.+... .=+.++|..-++++++++|
T Consensus 231 pLllNy~QC~L~----~~e~yevleh~seiL~~~~~nvKA~frRakAhaa----~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 231 PLLLNYCQCLLK----KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA----VWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHhHHHHHhh----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcCh
Confidence 344555556655 55665666555555544 555666666665554 4456666666666666655
No 280
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.87 E-value=28 Score=32.80 Aligned_cols=15 Identities=20% Similarity=-0.046 Sum_probs=13.4
Q ss_pred hHhHHHHHHHHHHHH
Q 009801 485 AERHQCAHSLWWQAS 499 (525)
Q Consensus 485 ~~~~~~A~~~~~~a~ 499 (525)
.++|.+|+.||+-|+
T Consensus 259 ~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 259 AKNYDEAIEWYELAL 273 (278)
T ss_pred hcCHHHHHHHHHHHH
Confidence 779999999999766
No 281
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.87 E-value=3.6 Score=26.20 Aligned_cols=30 Identities=27% Similarity=0.131 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcChHH
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAELGYEV 457 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 457 (525)
+.++.+|..+|+.+.|+..+++.++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 568888899999999999998888766543
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.96 E-value=9.8 Score=33.01 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-H----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----G 422 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~ 422 (525)
..++..+|..|.+ .||.++|++.|.++-+.. . .+.+.++-.+... .+|+.....+..++-.. +
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhccc
Confidence 4577888899988 889999999998876652 1 2233333333333 67888888888887533 2
Q ss_pred ChHHHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 423 PWSSLS----RWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 423 ~~~a~~----~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++.... .-|......++|.+|-..|-.+..
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 333322 336667778899999888876653
No 283
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.92 E-value=5.5 Score=26.57 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+.++..+++.|+|++|..+.+.+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4567788888888888888888888766
No 284
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=85.36 E-value=60 Score=35.23 Aligned_cols=83 Identities=12% Similarity=0.017 Sum_probs=56.7
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+++.+|+....+.. .|+...|...-|....+ .+..++|...++.... ..+...+-.+-.+|...+.+++|.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 667888888888843 33445555555666666 6677778766665433 246677777778888888888888
Q ss_pred HHHHHHHHHHH
Q 009801 181 KLYAELAEIAV 191 (525)
Q Consensus 181 ~~y~~~~~~~~ 191 (525)
..|+++....|
T Consensus 98 ~~Ye~~~~~~P 108 (932)
T KOG2053|consen 98 HLYERANQKYP 108 (932)
T ss_pred HHHHHHHhhCC
Confidence 88888766543
No 285
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.15 E-value=4.4 Score=38.24 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
+-.=|+-|+. .++|..|+..|.+.+.. ++ +..+.+-+-+-.. .+++..|+.-..+++.. .+..
T Consensus 84 ~KeeGN~~fK-----~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 84 YKEEGNEYFK-----EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHhHHHHH-----hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhcCcchhh
Confidence 3446777776 55999999999999976 33 3456778888877 89999999999999877 6888
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
++++-+.++.. .+.++.|+.|.+..++.+
T Consensus 155 a~~R~Akc~~e----Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 155 AYIRGAKCLLE----LERFAEAVNWCEEGLQID 183 (390)
T ss_pred hhhhhhHHHHH----HHHHHHHHHHHhhhhhhh
Confidence 99999999987 899999999999887765
No 286
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.52 E-value=1.5 Score=24.18 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
.+...||.++.. .|++++|...++
T Consensus 2 ~a~~~la~~~~~----~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLA----QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHh
Confidence 456677777777 777777776664
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.29 E-value=42 Score=32.57 Aligned_cols=144 Identities=14% Similarity=0.035 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN- 349 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~- 349 (525)
.....+..++.+... .|.++.|...+.++.... .+.....-+.+... .|+..+|+..++..++.
T Consensus 144 ~~~~~~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-----~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-----QGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-----cCCHHHHHHHHHHHHHHH
Confidence 345678888999988 999999999999988765 56777777777765 56889999999888772
Q ss_pred --CC--hhHHHHHHHHH-HcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCcCCHHHHHHHHHHHHHcC
Q 009801 350 --EE--AGGHYNLGVMY-YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHT--GVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 350 --~~--~~a~~~lg~~y-~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~--g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
.. +.....+.... ..... ... ........ ...+.++..+|..... ..-...+.+.++..|+.+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~---~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~ 288 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEV-ISS--TNLDKESK---ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD 288 (352)
T ss_pred hhhccccccHHHHhhcccccccc-ccc--cchhhhhH---HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC
Confidence 11 11111111111 00000 000 00000000 0012333334443333 0012478899999999999887
Q ss_pred C--hHHHHHHHHHHH
Q 009801 423 P--WSSLSRWALESY 435 (525)
Q Consensus 423 ~--~~a~~~l~~~~~ 435 (525)
+ ..+++.+|..+.
T Consensus 289 ~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 289 PSWEKAWHSWALFND 303 (352)
T ss_pred hhHHHHHHHHHHHHH
Confidence 5 446666666544
No 288
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.02 E-value=37 Score=31.78 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 386 ~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
++.++.+.++..+.. .++.+.|.+.+-..+..
T Consensus 234 dd~~aa~~lA~~~~~----~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 234 DDVEAALALADQLHL----VGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 556666666666665 66666666665555544
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.61 E-value=63 Score=34.08 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC------CCCCCHHHHHHHHHHHHHc
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGA------GVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~------~~~~~~~~A~~~~~~a~~~ 312 (525)
.-+|.-+..|+..-.... ++.-|...|.+..+-.-...--+|+.++.... +.-|.+++|.+.|..+-+.
T Consensus 689 nPHprLWrllAe~Al~Kl-----~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKL-----ALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHH-----hhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence 356788888887765442 66777777766544322223334444443321 1246788888887766444
Q ss_pred CC-HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH----hCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 313 QL-YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA----DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 313 ~~-~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~----~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
+- .+....|| |+-...++++..- +.+...|+.++|..+.. ....++|.++|.+.
T Consensus 764 DLAielr~klg------------DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~----~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 764 DLAIELRKKLG------------DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE----MMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhHHHHHhhh------------hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 31 12222222 3333333333311 11234566777777777 77777777777654
No 290
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=83.25 E-value=3.2 Score=41.18 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHH
Q 009801 369 KRDVKLACKYFLVAANAGHQ--KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~ 444 (525)
.++++.|+..|.+|++++.. ....+-+..+.. .+++..|+.-..+|++.+| ..++++.|.+....+.+.+|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 56777888888888877442 223334455554 6777888888888887775 446667777777777777777
Q ss_pred HHHHHHHHc
Q 009801 445 LLYSRMAEL 453 (525)
Q Consensus 445 ~~~~~a~~~ 453 (525)
..|++.+..
T Consensus 93 ~~l~~~~~l 101 (476)
T KOG0376|consen 93 LDLEKVKKL 101 (476)
T ss_pred HHHHHhhhc
Confidence 777776654
No 291
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.56 E-value=1.4 Score=41.53 Aligned_cols=80 Identities=14% Similarity=0.026 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhCCChh--HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHH
Q 009801 335 NYTKAKEYFEKAADNEEAG--GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHM 410 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~~~~~--a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~ 410 (525)
++++|+..|..+++.+.+. .+..-+.++.. .+....|++-+..|+.++ ....+-.-+..... .+++++
T Consensus 129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl----lg~~e~ 200 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL----LGNWEE 200 (377)
T ss_pred chhhhhcccccccccCCchhhhcccccceeee----ccCCchhhhhhhhhhccCcccccccchhhHHHHH----hhchHH
Confidence 4444555555554443222 22334444444 555555555555555442 22222233333333 455555
Q ss_pred HHHHHHHHHHcC
Q 009801 411 ATALYKLVAERG 422 (525)
Q Consensus 411 A~~~~~~a~~~~ 422 (525)
|...+..+++++
T Consensus 201 aa~dl~~a~kld 212 (377)
T KOG1308|consen 201 AAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHhcc
Confidence 555555555554
No 292
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.51 E-value=1.3 Score=41.86 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=52.0
Q ss_pred cCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCHHHHH
Q 009801 369 KRDVKLACKYFLVAANAGHQ--KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~l~~~~~~~g~~~~A~ 444 (525)
.+.+++|+..|.+++.++.. ..+.+-+.++.. .+....|++-+..|+++++.. .+-..|.....+|++++|.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeee----ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 66677777777777666433 333344555555 666677777777777766433 3335566666677777777
Q ss_pred HHHHHHHHcChH
Q 009801 445 LLYSRMAELGYE 456 (525)
Q Consensus 445 ~~~~~a~~~~~~ 456 (525)
..+..+++.+..
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 777777766543
No 293
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.30 E-value=3.5 Score=40.87 Aligned_cols=92 Identities=16% Similarity=0.050 Sum_probs=70.8
Q ss_pred ccCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCH
Q 009801 333 KKNYTKAKEYFEKAADNEE--AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNL 408 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~ 408 (525)
..+++.|+..|.+|++.+. +.-+-+-+..+.. ..++..|+.-..+|++.+ ...+++.-|.+... .+.+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~----l~~~ 88 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMA----LGEF 88 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHh----HHHH
Confidence 4589999999999999854 4444567788888 999999999999999885 34555555666665 6788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 009801 409 HMATALYKLVAERGPWSSLSRWAL 432 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~~~a~~~l~~ 432 (525)
.+|+.-|++.....|.+.....+.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHH
Confidence 888888888888877666554443
No 294
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=80.73 E-value=27 Score=27.82 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+.++.+..+...|+.++|+..|+.+.++
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4566777888899999999999998775
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.57 E-value=2.8 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~ 193 (525)
+.++.+|..+.+.++|++|..+.+.+++..|.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 357888999999999999999999998886655
No 296
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=80.10 E-value=1.1e+02 Score=34.35 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=67.8
Q ss_pred CCCCCccccCCC-----CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH-hcCChHHHHHHHHhhhcCCCccC
Q 009801 69 PGSWSPVFEPSI-----DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-MEGDPHARSVLGFLYGMGMMRER 142 (525)
Q Consensus 69 ~~~a~~~~~~~~-----~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~y~~g~g~~~ 142 (525)
|++|...|++.. +..--+|+|..|...+..+-..+++..+++|+..|++.- .++-|--+..-|.+|.. .+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 566 (932)
T PRK13184 491 YDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQR----LG 566 (932)
T ss_pred HHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHH----hh
Confidence 556666666662 223367899999999999888899999999999999954 55777777778888998 89
Q ss_pred CHHHHHHHHHHHHcC
Q 009801 143 NKGKAFLYHHFAAEG 157 (525)
Q Consensus 143 d~~~A~~~~~~a~~~ 157 (525)
++++-++.|..|.+.
T Consensus 567 ~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 567 EYNEEIKSLLLALKR 581 (932)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999873
No 297
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.38 E-value=1e+02 Score=33.64 Aligned_cols=220 Identities=11% Similarity=0.038 Sum_probs=121.4
Q ss_pred hHhHHHHHHHHHHHHh---c------CC--hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-------CCHHHHHHH
Q 009801 105 VRVMEEATSEVESAAM---E------GD--PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------GNIQSKMAV 166 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~---~------~~--~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~~~a~~~l 166 (525)
...+.+|...+.++.. . +. ++..-.-|.+-.. .+|+++|+++-+.+..+ -.+.+...+
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~----~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN----RGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 5668888888877532 1 11 2334445555555 77999999999999864 245677889
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHH--HHHHHHHH----HcC
Q 009801 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEA--FQILEYQA----QKG 240 (525)
Q Consensus 167 a~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A--~~~~~~~~----~~~ 240 (525)
|.+..-.|++++|..+.+++.+....-.. .-...........+...+|...-+ ...+...- ...
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~----------~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDV----------YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999888766332100 000001122233444555522222 22222111 111
Q ss_pred C---H--HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-C---H-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 241 N---A--GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-E---P-QSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 241 ~---~--~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~---~-~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
- . .....+...+.+. .....+|..+++-..... + + -+...|+.++.. .||.++|...+....
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~----~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~----~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRL----DLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL----RGDLDKALAQLDELE 645 (894)
T ss_pred ccchhHHHHHHHHHHHHHHH----hhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Confidence 0 1 1222222333221 123444444444433221 1 1 233578888888 999999999988875
Q ss_pred Hc---C--CH--HH-HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC
Q 009801 311 RQ---Q--LY--SA-YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE 350 (525)
Q Consensus 311 ~~---~--~~--~a-~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~ 350 (525)
.. + ++ .+ ...+..+|.. .+||..++..+..+....+
T Consensus 646 ~l~~~~~~~~~~~a~~~~v~~~lwl----~qg~~~~a~~~l~~s~~~~ 689 (894)
T COG2909 646 RLLLNGQYHVDYLAAAYKVKLILWL----AQGDKELAAEWLLKSGDPD 689 (894)
T ss_pred HHhcCCCCCchHHHHHHHhhHHHhc----ccCCHHHHHHHHHhccCch
Confidence 43 2 22 12 2223333332 3679999999999866543
No 298
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=79.18 E-value=8.1 Score=36.23 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 411 ATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 411 A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
|..||.+|+...| ...++++|.+....|+.-.|+-+|-+++-. ..+.|..||..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5667777777654 556677777777777777777777777633 455566677766655
No 299
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.16 E-value=20 Score=27.04 Aligned_cols=64 Identities=16% Similarity=-0.022 Sum_probs=44.3
Q ss_pred HHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHhccccHHHHHHHHHH
Q 009801 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GNIQSKMAVAYTYLRQDMHDKAVKLYAE 185 (525)
Q Consensus 118 a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~la~~y~~~~~~~~A~~~y~~ 185 (525)
+.+|++.++.+.+|..+.. .++++.|++.+-..+.. ++..+.-.|-.++...|.-+....-|++
T Consensus 16 a~~P~D~~ar~~lA~~~~~----~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 16 AANPDDLDARYALADALLA----AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4688999999999999988 89999999999998875 3456666666666665554444444443
No 300
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=77.51 E-value=1.1e+02 Score=33.24 Aligned_cols=94 Identities=17% Similarity=0.073 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHH
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYT 337 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~ 337 (525)
++++|+.-..+.++. +.+.+...=|....+ .|+.++|..+++..... .+...+-.+-.+|.. .+..+
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-----~~~~d 94 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-----LGKLD 94 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-----Hhhhh
Confidence 555555555555443 222333333444555 55666666444433222 244455555555554 34566
Q ss_pred HHHHHHHHHHhCC-ChhHHHHHHHHHHc
Q 009801 338 KAKEYFEKAADNE-EAGGHYNLGVMYYK 364 (525)
Q Consensus 338 ~A~~~~~~a~~~~-~~~a~~~lg~~y~~ 364 (525)
+|..+|++++... .-+-.+.+=++|.+
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 6666666666542 23333444444444
No 301
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.42 E-value=8.2 Score=23.32 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHH
Q 009801 425 SSLSRWALESYLKGDVGKAFLL--YSRMAE 452 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~--~~~a~~ 452 (525)
+.++.+|..++.+|++++|+.. |.-++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4566778888888888888888 435544
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.29 E-value=27 Score=27.38 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=12.5
Q ss_pred HHHHhccccHHHHHHHHHHHHH
Q 009801 167 AYTYLRQDMHDKAVKLYAELAE 188 (525)
Q Consensus 167 a~~y~~~~~~~~A~~~y~~~~~ 188 (525)
|.-++..|++-+|+++.+.++.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~ 24 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLIS 24 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3445556666666666665543
No 303
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.15 E-value=5.8 Score=28.68 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=11.2
Q ss_pred hHhHHHHHHHHHHHHh
Q 009801 485 AERHQCAHSLWWQASE 500 (525)
Q Consensus 485 ~~~~~~A~~~~~~a~~ 500 (525)
.++|++|+.+|.+|++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5567777777777765
No 304
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.10 E-value=15 Score=29.99 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=8.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 009801 430 WALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
|+..+++.|+|++|+.+....+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333333333333333
No 305
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=76.07 E-value=9.1 Score=35.74 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGI 321 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l 321 (525)
+.++|..+|+.|+.. .+++++..+|..... .++.-+|-++|-+|+.. ++.+++.+-
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 777777777777654 677777777777776 66777777777777654 355555443
No 306
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.85 E-value=76 Score=30.37 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=88.2
Q ss_pred HhhhccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHcCC
Q 009801 218 ALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP--QSMEFLGEIYARGA 293 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~Lg~~y~~g~ 293 (525)
.+....|+.-+|-..+.+..+. .+.-+.----..+...| +...-...+++.+..-++ ..+..+--+|..|.
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G-----~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNG-----NQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhcc-----chhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3445566676766666666543 34333333334444442 555566677777765221 22223333333333
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC---CCh---hHHHHHHHHHHcC
Q 009801 294 GVERNYTKALEWLTHAARQQLYS--AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EEA---GGHYNLGVMYYKG 365 (525)
Q Consensus 294 ~~~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---~~~---~a~~~lg~~y~~g 365 (525)
-..|-+++|.+.-+++++.+..+ +...++.++.. .++.+++.++..+.-+. +.- --+-..+.++..
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-----~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE- 259 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-----NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE- 259 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-----cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc-
Confidence 33778888888888888876444 44556666655 45888888887775443 111 122346777777
Q ss_pred CCCcCCHHHHHHHHHHHH
Q 009801 366 IGVKRDVKLACKYFLVAA 383 (525)
Q Consensus 366 ~~~~~~~~~A~~~~~~a~ 383 (525)
...++.|+..|.+-+
T Consensus 260 ---~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 ---GAEYEKALEIYDREI 274 (491)
T ss_pred ---ccchhHHHHHHHHHH
Confidence 678888888886543
No 307
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.43 E-value=30 Score=28.26 Aligned_cols=67 Identities=9% Similarity=0.171 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
.....++++...... ....|.++.+..++..++..+ -...+.|+.-+.+ .++|+++++|....++..
T Consensus 31 s~~s~f~lAwaLV~S--~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR----lkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRS--RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR----LKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcc--cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH----HhhHHHHHHHHHHHHhhC
Confidence 456778888887766 344678889999999887433 3567778888887 889999999988877653
No 308
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.36 E-value=33 Score=25.98 Aligned_cols=49 Identities=12% Similarity=-0.053 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHHHc----CC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 405 KKNLHMATALYKLVAER----GP-------WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~----~~-------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+|+..|++.+.+..+. +. ..+..+++.+....|++++|+..+++|++.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46777776666665433 11 245677888888999999999999988764
No 309
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.85 E-value=25 Score=26.65 Aligned_cols=48 Identities=27% Similarity=0.229 Sum_probs=33.8
Q ss_pred cCHHHHHHHHHHHHhc----C-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 261 RDRTKALMWFSKAADK----G-------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~----~-------~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
+|+..|++.+.+..+. + ...+..++|.++.. .|++++|+..+++|++.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIRL 70 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 4777777777766542 1 13566778888877 78888888888888754
No 310
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=74.30 E-value=7.4 Score=23.86 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+.+..||.+....++|++|+.-|+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45678899999999999999999998865
No 311
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.82 E-value=95 Score=30.52 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 009801 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALE 304 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~ 304 (525)
.++++...|..++...||+.+..+-.- .+-+..++..++.++.. +||.+.|.+
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~-----------------------~PyHidtLlqls~v~~~----~gd~~~A~~ 61 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQK-----------------------NPYHIDTLLQLSEVYRQ----QGDHAQAND 61 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHH-----------------------CCCcHHHHHHHHHHHHH----cCCHHHHHH
Confidence 455566666666665666555433211 13567788888888888 888888888
Q ss_pred HHHHHH
Q 009801 305 WLTHAA 310 (525)
Q Consensus 305 ~~~~a~ 310 (525)
.+++|+
T Consensus 62 lleRAL 67 (360)
T PF04910_consen 62 LLERAL 67 (360)
T ss_pred HHHHHH
Confidence 888875
No 312
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=73.48 E-value=7.9 Score=23.38 Aligned_cols=23 Identities=17% Similarity=0.496 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhccccHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLY 183 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y 183 (525)
+..+.+|..+..+|++++|++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHH
Confidence 34566777777777777777773
No 313
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.11 E-value=20 Score=22.85 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH
Q 009801 283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLY 315 (525)
Q Consensus 283 ~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~ 315 (525)
+.|+..|.. .||.+.|...++..+..++.
T Consensus 3 LdLA~ayie----~Gd~e~Ar~lL~evl~~~~~ 31 (44)
T TIGR03504 3 LDLARAYIE----MGDLEGARELLEEVIEEGDE 31 (44)
T ss_pred hHHHHHHHH----cCChHHHHHHHHHHHHcCCH
Confidence 567888888 88888888888888766554
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.93 E-value=79 Score=29.22 Aligned_cols=215 Identities=14% Similarity=0.073 Sum_probs=99.0
Q ss_pred cCCHHHHHHHHHHHHcC----CC--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchh
Q 009801 141 ERNKGKAFLYHHFAAEG----GN--IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE 214 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~----~~--~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (525)
..+++.|+.-|++.++. |. ..|+-.+-.++...+++++-.+.|++++.-.............+.++.-+.-...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 44666666667666653 21 2556666677777777777777777765433222211111111111111000011
Q ss_pred hhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCH-----------HHH
Q 009801 215 NKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP-----------QSM 282 (525)
Q Consensus 215 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~-----------~a~ 282 (525)
+.+. -+.-|+..+..++.+-.. ---..-..||.+|...+ .-...++-++-+.+.++..+. ..+
T Consensus 120 ~m~L---LQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~--e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiY 194 (440)
T KOG1464|consen 120 NMDL---LQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRG--EYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIY 194 (440)
T ss_pred hhHH---HHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHH--HHHHHHHHHHHHHHHhccccCchhhhccchhhhhH
Confidence 1110 011122233333322111 01223356788886652 111333344444445543211 122
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCCC--CCccCHHHHHHHHHHHHhC----CChh--
Q 009801 283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLYSA-YNGIGYLYVKGYG--VEKKNYTKAKEYFEKAADN----EEAG-- 353 (525)
Q Consensus 283 ~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a-~~~lg~~~~~g~~--~~~~~~~~A~~~~~~a~~~----~~~~-- 353 (525)
..=-++|.. +++-.+-...|++++....+-. -.-+|.+..-|.. ...|.+++|-.-|-.|... |+|.
T Consensus 195 AlEIQmYT~----qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt 270 (440)
T KOG1464|consen 195 ALEIQMYTE----QKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT 270 (440)
T ss_pred hhHhhhhhh----hcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh
Confidence 222235555 6777777778888876431111 1345665554432 2245788887766666543 3332
Q ss_pred ---HHHHHHHHHHc
Q 009801 354 ---GHYNLGVMYYK 364 (525)
Q Consensus 354 ---a~~~lg~~y~~ 364 (525)
-+..|+.++..
T Consensus 271 tCLKYLVLANMLmk 284 (440)
T KOG1464|consen 271 TCLKYLVLANMLMK 284 (440)
T ss_pred HHHHHHHHHHHHHH
Confidence 23456666655
No 315
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.74 E-value=1e+02 Score=30.34 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=47.9
Q ss_pred hHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYA 184 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~ 184 (525)
...|.++...|..+....++..+..+=.. .+=|++++..++.++..+|+...|-+..+
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~----------------------~PyHidtLlqls~v~~~~gd~~~A~~lle 64 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNALINLLQK----------------------NPYHIDTLLQLSEVYRQQGDHAQANDLLE 64 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHHHHHHHH----------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45677777777777777777665543211 23478999999999999999999999999
Q ss_pred HHHHHHH
Q 009801 185 ELAEIAV 191 (525)
Q Consensus 185 ~~~~~~~ 191 (525)
+++-.-.
T Consensus 65 RALf~~e 71 (360)
T PF04910_consen 65 RALFAFE 71 (360)
T ss_pred HHHHHHH
Confidence 8875543
No 316
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.61 E-value=32 Score=35.69 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAA--------NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-- 422 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~--------~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 422 (525)
..+.+-|.-..+ .++|..+++||+.++ +...+.....++.+|.. ..+.++|+++++.|-+.+
T Consensus 355 ~iLWn~A~~~F~----~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 355 TLLWNTAKKLFK----MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHHHHhhHHHHH----HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhhccc
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 423 PWSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 423 ~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.+-.+...-.+....|+-++|+........
T Consensus 427 ~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 427 SPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHh
No 317
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.86 E-value=7.4 Score=28.12 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
+.++|+.+.++|++.+. .+++++|+.+|.+|++.
T Consensus 2 ~l~kai~Lv~~A~~eD~-----------------~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDEDE-----------------KGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhhH-----------------hhhHHHHHHHHHHHHHH
Confidence 34566666666655432 45666666666666553
No 318
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.61 E-value=54 Score=26.78 Aligned_cols=40 Identities=23% Similarity=0.057 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHH
Q 009801 423 PWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNA 462 (525)
Q Consensus 423 ~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~l 462 (525)
+++....+|.+|-+.|+.++|-+.+.+|++.|-.+|..++
T Consensus 119 ~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 119 NPEFLVKIANAYKKLGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHHHHHHh
Confidence 5777788888888888888888888888888887777664
No 319
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=71.53 E-value=8.8 Score=23.53 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+.+..||.+-.. ..++++|+.-|+++++.
T Consensus 2 dv~~~Lgeisle----~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE----NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH----hccHHHHHHHHHHHHHH
Confidence 345556666666 56666666666665543
No 320
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=70.52 E-value=16 Score=34.30 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHh
Q 009801 266 ALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVK 327 (525)
Q Consensus 266 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 327 (525)
|..||.+|+.. ++...++.||.++.. .++.=.|+.+|-+++-. +.+.|..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889998875 778889999999998 88999999999999743 467788888888755
No 321
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.03 E-value=7.1 Score=28.34 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=9.2
Q ss_pred hHhHHHHHHHHHHHHh
Q 009801 485 AERHQCAHSLWWQASE 500 (525)
Q Consensus 485 ~~~~~~A~~~~~~a~~ 500 (525)
.++|++|+.+|+.|++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (76)
T cd02681 19 EGRYSEAVFYYKEAAQ 34 (76)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4456666666665553
No 322
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.82 E-value=25 Score=33.29 Aligned_cols=97 Identities=20% Similarity=0.204 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
..+++...+..|.+.+ |.+.|++++++..+. +-.-....||..|....-+....++|-..+++..+-
T Consensus 103 v~ea~~~kaeYycqig-----Dkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDW 177 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIG-----DKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCh
Confidence 4678999999999985 999999999886543 334567788888887444455666676666654321
Q ss_pred C---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC
Q 009801 313 Q---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (525)
Q Consensus 313 ~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~ 349 (525)
. .-.++..+-.+- ..|+.+|-.+|..++..
T Consensus 178 eRrNRlKvY~Gly~ms-------vR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 178 ERRNRLKVYQGLYCMS-------VRNFKEAADLFLDSVST 210 (393)
T ss_pred hhhhhHHHHHHHHHHH-------HHhHHHHHHHHHHHccc
Confidence 1 122222222222 33889999988887754
No 323
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.44 E-value=1.4e+02 Score=30.62 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcC-hHHHH
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERG---------PWSSLSRWALESYLKGD-VGKAFLLYSRMAELG-YEVAQ 459 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~l~~~~~~~g~-~~~A~~~~~~a~~~~-~~~a~ 459 (525)
..-+|.+..+ .++...|..+|+..++.. .|.|+|.+|..+..+|. ..++..++.+|-+-. +-+--
T Consensus 452 ~lL~g~~lR~----Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~le 527 (546)
T KOG3783|consen 452 YLLKGVILRN----LGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELE 527 (546)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchh
Confidence 3455888887 889999999999998441 48899999999999998 999999999998874 43333
Q ss_pred HHHH
Q 009801 460 SNAA 463 (525)
Q Consensus 460 ~~la 463 (525)
+.|.
T Consensus 528 nRLh 531 (546)
T KOG3783|consen 528 NRLH 531 (546)
T ss_pred hHHH
Confidence 3443
No 324
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=68.79 E-value=1.6e+02 Score=31.01 Aligned_cols=48 Identities=13% Similarity=-0.063 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 405 KKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++.+|...-++--+. .+..++..|.-+.+..++++|-+.|.+|-+.
T Consensus 786 ~~~W~eAFalAe~hPe~-~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEF-KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred cccchHhHhhhhhCccc-cccccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 56777776554322221 2456677777788888999999999887654
No 325
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.06 E-value=14 Score=26.82 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=15.2
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 009801 434 SYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~ 453 (525)
.-..|+|++|+.+|..+++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 45677888888888888764
No 326
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.69 E-value=17 Score=25.70 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=15.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 009801 433 ESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~ 453 (525)
-.-..|++++|+.+|.++++.
T Consensus 14 ~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 14 EADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 355577888888888888764
No 327
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.26 E-value=8.9 Score=27.16 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=9.8
Q ss_pred hHhHHHHHHHHHHHHh
Q 009801 485 AERHQCAHSLWWQASE 500 (525)
Q Consensus 485 ~~~~~~A~~~~~~a~~ 500 (525)
.+++++|+.+|.+|++
T Consensus 18 ~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 18 AGNYEEALELYKEAIE 33 (69)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4456666666666653
No 328
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=67.16 E-value=36 Score=26.76 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 409 HMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
-.|++.|.+++...|.. +..++..++.-....+|++++
T Consensus 61 l~sve~~s~a~~Lsp~~-----A~~L~~la~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDS-----AHSLFELASQLGSVKYYKKAV 98 (111)
T ss_pred HHhHHHHHHHhccChhH-----HHHHHHHHHHhhhHHHHHHHH
Confidence 44677777777776644 223333333333444444443
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.25 E-value=2e+02 Score=30.76 Aligned_cols=73 Identities=18% Similarity=0.057 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCHHHHHHHHH--------HHHH
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERG-----------PWSSLSRWALESYLKGDVGKAFLLYS--------RMAE 452 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~l~~~~~~~g~~~~A~~~~~--------~a~~ 452 (525)
++.+.+... .+++.+|....+.+.+.. .+..++..|..+...|+.+.|...|. .+..
T Consensus 365 ~y~~~~~~~----~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~ 440 (608)
T PF10345_consen 365 FYQIWCNFI----RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANR 440 (608)
T ss_pred HHHHHHHHH----CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhcc
Confidence 344444554 788988988888776542 25567788999999999999999998 3333
Q ss_pred cC-----hHHHHHHHHHHHhh
Q 009801 453 LG-----YEVAQSNAAWILDK 468 (525)
Q Consensus 453 ~~-----~~~a~~~la~~~~~ 468 (525)
.+ ...|..|+..++..
T Consensus 441 ~~~~~El~ila~LNl~~I~~~ 461 (608)
T PF10345_consen 441 KSKFRELYILAALNLAIILQY 461 (608)
T ss_pred CCcchHHHHHHHHHHHHHhHh
Confidence 32 23466777777764
No 330
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.00 E-value=76 Score=25.96 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGI 321 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 321 (525)
-+|..+..+|..|.. .|+..++.+.+++|++.|..+|+.++
T Consensus 118 ~~p~~L~kia~Ay~k----lg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 118 INPEFLVKIANAYKK----LGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp S-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHH----hcchhhHHHHHHHHHHhchHHHHHHh
Confidence 456667777777777 77777777777777777777776654
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.82 E-value=3.6e+02 Score=33.34 Aligned_cols=142 Identities=12% Similarity=0.018 Sum_probs=98.5
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh------
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW------ 424 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------ 424 (525)
..+.|...|.+-+. .+.++.|..+.-.|.+.+-+++....|..... .++...|+..+++.++..-+
T Consensus 1669 ~ge~wLqsAriaR~----aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~----~gd~~~Al~~Lq~~l~~~~~~~~~~~ 1740 (2382)
T KOG0890|consen 1669 LGECWLQSARIARL----AGHLQRAQNALLNAKESRLPEIVLERAKLLWQ----TGDELNALSVLQEILSKNFPDLHTPY 1740 (2382)
T ss_pred hHHHHHHHHHHHHh----cccHHHHHHHHHhhhhcccchHHHHHHHHHHh----hccHHHHHHHHHHHHHhhcccccCCc
Confidence 45678888888888 89999999999999999999999999999987 99999999999999966311
Q ss_pred ----H---------HHHHHHHHHHhcCC--HHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHh
Q 009801 425 ----S---------SLSRWALESYLKGD--VGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAER 487 (525)
Q Consensus 425 ----~---------a~~~l~~~~~~~g~--~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 487 (525)
. +....+.-....++ -+.-+.+|..+.+- .....++.+|..|+++ +.....+..-..++
T Consensus 1741 ~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl----l~~~~~~~~E~~g~ 1816 (2382)
T KOG0890|consen 1741 TDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL----LEDYKSNKMEKSGR 1816 (2382)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH----hhhhhccccccccc
Confidence 1 23333333334444 33455667777654 2455678888777662 22222333333444
Q ss_pred HHH---HHHHHHHHHhCCCH
Q 009801 488 HQC---AHSLWWQASEQGNE 504 (525)
Q Consensus 488 ~~~---A~~~~~~a~~~~~~ 504 (525)
+.. |+.+|.+|+.-|+.
T Consensus 1817 ~~~~l~~~~~~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1817 VLSLLKAIYFFGRALYYGNQ 1836 (2382)
T ss_pred HHHHHHHHHHHHHHHHhcch
Confidence 444 78888899988763
No 332
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=63.39 E-value=19 Score=25.98 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=16.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 009801 431 ALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+.-+-..|++.+|+.+|+++++.
T Consensus 13 AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 33456678888888888888764
No 333
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=63.05 E-value=62 Score=36.72 Aligned_cols=81 Identities=11% Similarity=-0.070 Sum_probs=61.2
Q ss_pred hHhHHHHHH------HHHH---HHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----------CCHHHHHH
Q 009801 105 VRVMEEATS------EVES---AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----------GNIQSKMA 165 (525)
Q Consensus 105 ~~~~~~A~~------~~~~---a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----------~~~~a~~~ 165 (525)
.+.+.+|.+ ++.+ ..++..+..+..|+.++.. .+|.+.|+.+-.+|.-. +...++.+
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 444555555 6654 2466778888999999998 99999999999988632 24567788
Q ss_pred HHHHHhccccHHHHHHHHHHHHHH
Q 009801 166 VAYTYLRQDMHDKAVKLYAELAEI 189 (525)
Q Consensus 166 la~~y~~~~~~~~A~~~y~~~~~~ 189 (525)
++......+....|+..+.++...
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHh
Confidence 888888888888888888888665
No 334
>PRK10941 hypothetical protein; Provisional
Probab=62.22 E-value=50 Score=30.85 Aligned_cols=60 Identities=13% Similarity=-0.002 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHH--HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSL--SRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~--~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
-..+|-.+|.. .+++++|+.+.+..+...|.+.+ .-.|.+|.++|.+..|..-++..+++
T Consensus 183 ml~nLK~~~~~----~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALME----EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHH----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44566677776 89999999999999999875554 35799999999999999999999876
No 335
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.72 E-value=1e+02 Score=26.19 Aligned_cols=66 Identities=21% Similarity=0.147 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCC
Q 009801 406 KNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGE 471 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~ 471 (525)
++.+.+...+...--+.| +....--|+++...|++.+|+..++...+. +.+.+.-.++.++...||
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 355555555544333333 334444566666666666666666665544 345455556666655444
No 336
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.56 E-value=13 Score=26.84 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=10.5
Q ss_pred hHhHHHHHHHHHHHHh
Q 009801 485 AERHQCAHSLWWQASE 500 (525)
Q Consensus 485 ~~~~~~A~~~~~~a~~ 500 (525)
.+++++|+.+|+++++
T Consensus 19 ~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 19 EGNAEDAITNYKKAIE 34 (75)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5566677777776664
No 337
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.76 E-value=2.1e+02 Score=29.48 Aligned_cols=259 Identities=19% Similarity=0.156 Sum_probs=137.9
Q ss_pred hhhccCCcHHHHHHHHHHHHcCC-HHHHHH-HHHHHHhcC---CC-CccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009801 219 LRKSRGEDDEAFQILEYQAQKGN-AGAMYK-IGLFYYFGL---RG-LRRDRTKALMWFSKAADK--GEPQSMEFLGEIYA 290 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~~~~~-~~a~~~-Lg~~y~~~~---~~-~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 290 (525)
+....|+-+++...+...+...+ -.+.-. +...|.... .+ ...|-+...+.+.+.-+. .++.-.+.-+.++.
T Consensus 199 vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~ 278 (546)
T KOG3783|consen 199 VVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARILS 278 (546)
T ss_pred HHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHHH
Confidence 34456777777777777655532 122111 111111100 00 112333333333333222 33444444566666
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC-hhHH--HHHHHHHH
Q 009801 291 RGAGVERNYTKALEWLTHAARQQ----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE-AGGH--YNLGVMYY 363 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~-~~a~--~~lg~~y~ 363 (525)
. .|+.+.|+..++.+++.. ..-..+.+|.++.. ..++..|...+....+.++ +.+. +..|-++.
T Consensus 279 ~----~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~-----~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 279 I----KGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVG-----QHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred H----cccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 5 677888999999887721 33455667776654 3489999999988887743 3333 33445555
Q ss_pred cCC----CCcCCHHHHHHHHHHHHHc------------------------C-----CHHH--HHHHHHHHHcCCC-CcCC
Q 009801 364 KGI----GVKRDVKLACKYFLVAANA------------------------G-----HQKA--FYQLAKMFHTGVG-LKKN 407 (525)
Q Consensus 364 ~g~----~~~~~~~~A~~~~~~a~~~------------------------~-----~~~a--~~~l~~~y~~g~g-~~~~ 407 (525)
... +..++-++|..+.+..-+. + ...+ ++.+...+. |.. ..++
T Consensus 350 ~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wn-gf~~~s~~ 428 (546)
T KOG3783|consen 350 QNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWN-GFSRMSKN 428 (546)
T ss_pred ccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHh-hcccCChh
Confidence 432 1233444444444332110 1 0111 233333332 221 1222
Q ss_pred HHHHHHHHHHHHHcCC--hH--HHHHHHHHHHhcCCHHHHHHHHHHHHHc---------ChHHHHHHHHHHHhhhCCCcc
Q 009801 408 LHMATALYKLVAERGP--WS--SLSRWALESYLKGDVGKAFLLYSRMAEL---------GYEVAQSNAAWILDKYGEGSM 474 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~--~~--a~~~l~~~~~~~g~~~~A~~~~~~a~~~---------~~~~a~~~la~~~~~~~~~~~ 474 (525)
.......-...-+.++ .. -++.+|.++..+|+...|..+|...++. -.|.|++-+|.++...+
T Consensus 429 ~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~---- 504 (546)
T KOG3783|consen 429 ELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLG---- 504 (546)
T ss_pred hHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcc----
Confidence 2211111111111211 12 2347799999999999999999988843 26889999999997731
Q ss_pred ccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 475 CMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 475 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+-..++..|+.+|-+-.
T Consensus 505 -----------g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 505 -----------GGLKEARALLLKAREYA 521 (546)
T ss_pred -----------cChHHHHHHHHHHHhhc
Confidence 13678999999998754
No 338
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=60.73 E-value=14 Score=27.10 Aligned_cols=21 Identities=19% Similarity=0.117 Sum_probs=16.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 009801 433 ESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~ 453 (525)
-+-..|+.++|+.+|++++..
T Consensus 17 ~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 17 RADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hhhhcCCHHHHHHHHHHHHHH
Confidence 366788888888888888764
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.68 E-value=64 Score=23.61 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=17.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 431 ALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
|.-+|...+.++|+..++++++. ..+.-+.-||++..
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~q 51 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQ 51 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 44445555555555555555543 23333444444443
No 340
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.33 E-value=1.5e+02 Score=27.65 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=26.9
Q ss_pred HHHHHHHHHH--HhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 337 TKAKEYFEKA--ADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 337 ~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
++|++|- +. -..|+|+.+..+|..|.+ .+++.+|...|-.+
T Consensus 74 ~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 74 KAAIKWS-KFGSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHH-HTSS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHTS
T ss_pred HHHHHHH-ccCCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHhc
Confidence 4566666 21 233788999999999998 88888888776543
No 341
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=60.08 E-value=17 Score=26.46 Aligned_cols=11 Identities=27% Similarity=0.169 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 009801 442 KAFLLYSRMAE 452 (525)
Q Consensus 442 ~A~~~~~~a~~ 452 (525)
.|+.+..+|++
T Consensus 5 ~a~~l~~~Ave 15 (77)
T cd02683 5 AAKEVLKRAVE 15 (77)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 342
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.84 E-value=1.7e+02 Score=28.19 Aligned_cols=143 Identities=13% Similarity=-0.142 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCCh--hHH----HHHHHHHHcCCC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA--GGH----YNLGVMYYKGIG 367 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~--~a~----~~lg~~y~~g~~ 367 (525)
.|+..+|-...++.++.- +.-+....-..++. .|+.+.-...+++.+..=++ ..+ -.++..+..
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy-----~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E--- 187 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY-----NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE--- 187 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHh-----ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH---
Confidence 345555555555555432 22222222223332 23445555666666655221 112 233444444
Q ss_pred CcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCC
Q 009801 368 VKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------WSSLSRWALESYLKGD 439 (525)
Q Consensus 368 ~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~l~~~~~~~g~ 439 (525)
.+-+.+|.+.-+++++++ +..+....+.+++. .+++++++++..+.-..-. ..-+...+..+.+.+.
T Consensus 188 -~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem----~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae 262 (491)
T KOG2610|consen 188 -CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM----NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE 262 (491)
T ss_pred -hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh----cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc
Confidence 677777777777777764 45555666666665 7777777777776543321 1122344555666677
Q ss_pred HHHHHHHHHHHH
Q 009801 440 VGKAFLLYSRMA 451 (525)
Q Consensus 440 ~~~A~~~~~~a~ 451 (525)
|+.|++.|.+-+
T Consensus 263 ye~aleIyD~ei 274 (491)
T KOG2610|consen 263 YEKALEIYDREI 274 (491)
T ss_pred hhHHHHHHHHHH
Confidence 777777776543
No 343
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.74 E-value=80 Score=38.39 Aligned_cols=68 Identities=9% Similarity=-0.118 Sum_probs=60.4
Q ss_pred CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Q 009801 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (525)
Q Consensus 122 ~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~ 193 (525)
.-.+.+..+|++-+. .|..+.|..+.-.|.+..-+.+....|...+.+|+-..|+..+++.++....+
T Consensus 1668 ~~ge~wLqsAriaR~----aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARL----AGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hhHHHHHHHHHHHHh----cccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 346788888888887 88999999999999998889999999999999999999999999999776554
No 344
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=59.40 E-value=26 Score=25.55 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+|+.+.++|++ .-..|++++|+.+|.++++.
T Consensus 3 ~~~a~~l~~~Ave-------------~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 3 ELAAKEVLKRAVE-------------LDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred hHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHH
Confidence 3455666665554 44567777777777777654
No 345
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.23 E-value=20 Score=32.20 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=28.6
Q ss_pred ccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
.+|.+.|.+.|.++++. .....|+.+|..-.. .++.+.|...|++.++.
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek----ag~~daAa~a~~~~L~l 58 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK----AGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh----cccHHHHHHHHHHHHcC
Confidence 34555666666666555 345555666666655 56666666666665555
No 346
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=57.64 E-value=17 Score=26.31 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 409 HMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+|+..+++|++.+. .|+|++|+.+|..+++.
T Consensus 4 ~~A~~l~~~Ave~d~-------------~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEE-------------EGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHHH
Confidence 456666666655433 26777777777777764
No 347
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=57.03 E-value=2.4e+02 Score=29.11 Aligned_cols=147 Identities=15% Similarity=0.100 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHcCC---CHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhh
Q 009801 143 NKGKAFLYHHFAAEGG---NIQSKMAVAYTYLRQ---DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK 216 (525)
Q Consensus 143 d~~~A~~~~~~a~~~~---~~~a~~~la~~y~~~---~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (525)
-..++.+.|+++++.- +..-++.++..-... +.+++.-..|+++..+....... ...+.
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL---------------v~~~~ 372 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL---------------VYCQY 372 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce---------------ehhHH
Confidence 3567888888887642 223333333332222 23666667777776543222111 01111
Q ss_pred hHhhhccCCcHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CC-HHHHHHHHHHHHcC
Q 009801 217 GALRKSRGEDDEAFQILEYQAQKGNAG--AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GE-PQSMEFLGEIYARG 292 (525)
Q Consensus 217 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~-~~a~~~Lg~~y~~g 292 (525)
-..-++..-.+.|...|.++-+..... .+..-|.+=+ ...+|.+-|.+.|+-.++. ++ +.--......+..
T Consensus 373 mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy----~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~- 447 (656)
T KOG1914|consen 373 MNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY----YCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH- 447 (656)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH----HhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH-
Confidence 112223334456667777765543222 2222222211 1224888888888887775 33 3322223333333
Q ss_pred CCCCCCHHHHHHHHHHHHHc
Q 009801 293 AGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 293 ~~~~~~~~~A~~~~~~a~~~ 312 (525)
.++-..+..+|++++..
T Consensus 448 ---lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 448 ---LNDDNNARALFERVLTS 464 (656)
T ss_pred ---hCcchhHHHHHHHHHhc
Confidence 66777788888887765
No 348
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=56.98 E-value=1.2e+02 Score=34.71 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=67.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GE---PQSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
.+..+..+..|+.++... +++++|+.+-.+++-. ++ ...+.+++...+. .++...|+..+.
T Consensus 969 h~~~~~~~~~La~l~~~~-----~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~----~~~~~~al~~~~ 1039 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRL-----GDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA----VKNLSGALKSLN 1039 (1236)
T ss_pred chhHHHHHHHHHHHHhhh-----cchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh----ccCccchhhhHH
Confidence 345677888899999777 4999999999988643 22 3466667766665 557777888877
Q ss_pred HHHHcC----------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC
Q 009801 308 HAARQQ----------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (525)
Q Consensus 308 ~a~~~~----------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~ 349 (525)
++...- -+..-.+++.++.. .++++.|+.+++.|...
T Consensus 1040 ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~-----v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1040 RALKLKLLSSGEDHPPTALSFINLELLLLG-----VEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHHhhccccCCCCCchhhhhhHHHHHHhh-----HHHHHHHHHHHHHHHHH
Confidence 776531 12234566666543 34788888888888753
No 349
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=56.21 E-value=21 Score=25.81 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHc
Q 009801 440 VGKAFLLYSRMAEL 453 (525)
Q Consensus 440 ~~~A~~~~~~a~~~ 453 (525)
..+|+....+|++.
T Consensus 3 l~~Ai~lv~~Av~~ 16 (75)
T cd02684 3 LEKAIALVVQAVKK 16 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666777776655
No 350
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=56.06 E-value=7.1 Score=21.34 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=14.0
Q ss_pred CCCCCCchhHHHHHH-HHhhcccc
Q 009801 1 MPELTSTPKLIICLL-ILSLYPIS 23 (525)
Q Consensus 1 ~~~~~~~~~~~~~l~-~~~~~~~~ 23 (525)
||.+..-.+++++++ ++.|.+|+
T Consensus 1 M~~~~mmKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 1 MPSLSMMKKILFPLLALFMLAGCS 24 (25)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcc
Confidence 455566667777654 44466775
No 351
>PF12854 PPR_1: PPR repeat
Probab=55.81 E-value=30 Score=20.35 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSR 449 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~ 449 (525)
...+..+-..+.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34566777889999999999988864
No 352
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.47 E-value=1.8e+02 Score=27.28 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
..+++.++|..|.+.+ |.+.+.+|..+.... +.--....||.+|-. ..-.++.++...-.++.
T Consensus 114 ~~ea~~n~aeyY~qi~-----D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d----~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 114 GSEADRNIAEYYCQIM-----DIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD----RKVVEESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHh
Confidence 4678999999998884 999999998886543 233455678888876 44344444444444544
Q ss_pred C-CHH------HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC
Q 009801 313 Q-LYS------AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (525)
Q Consensus 313 ~-~~~------a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~ 349 (525)
| +.+ ++..+-.+. ..++.+|-.++...+..
T Consensus 185 GgDWeRrNRyK~Y~Gi~~m~-------~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 185 GGDWERRNRYKVYKGIFKMM-------RRNFKEAAILLSDILPT 221 (412)
T ss_pred CCCHHhhhhHHHHHHHHHHH-------HHhhHHHHHHHHHHhcc
Confidence 3 333 222222222 23788888887776643
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=55.21 E-value=3.5e+02 Score=30.47 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=62.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCC
Q 009801 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN 241 (525)
Q Consensus 162 a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 241 (525)
.+....+.++..+.|+.|+..|+++...-|.. ..-
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~ 511 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGR---------------------------------------------KEG 511 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCc---------------------------------------------ccc
Confidence 34555667777788888888888876532111 011
Q ss_pred HHHHHHHHHHHHhcC--CCCccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 242 AGAMYKIGLFYYFGL--RGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~--~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
-+|++.+|......- .+.+.++.+|+.-|++.-.. +-|--+..-|.+|.. .+++++-++.|..|++.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQR----LGEYNEEIKSLLLALKR 581 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHH----hhhHHHHHHHHHHHHHh
Confidence 345555555543321 11123567777777775432 444555556677888 88999999999999875
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.13 E-value=81 Score=23.08 Aligned_cols=44 Identities=7% Similarity=-0.026 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHHHcC--ChHHH---HHHHHHHHhcCCHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERG--PWSSL---SRWALESYLKGDVGKAFLLYS 448 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~--~~~a~---~~l~~~~~~~g~~~~A~~~~~ 448 (525)
..+.++|+..++++++.. ++.-+ -.+..++...|+|++.+.+-.
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999998774 33333 345556888899888877643
No 355
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=52.81 E-value=3.2e+02 Score=29.20 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=79.5
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH---hcCC-----hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA---MEGD-----PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE 156 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~---~~~~-----~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~ 156 (525)
+.+.+.+|.+++.. -.|++.|..+++|+. +..+ -.+.+.++.+|.. .+..-|..+.+++++
T Consensus 59 a~~~l~la~iL~~e------T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-----~~~~~a~~~l~~~I~ 127 (608)
T PF10345_consen 59 ARVRLRLASILLEE------TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-----TNPKAALKNLDKAIE 127 (608)
T ss_pred HHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHH
Confidence 56678888888864 667999999999974 2221 3455678888885 344449999999876
Q ss_pred C----C--CHHHHHHH--HHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHH
Q 009801 157 G----G--NIQSKMAV--AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDE 228 (525)
Q Consensus 157 ~----~--~~~a~~~l--a~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (525)
. + ...-.+.+ ..++...+|+..|++.++.+.......... .+.+ -.....+.+....+..++
T Consensus 128 ~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~--------~~~v--~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 128 DSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP--------AVFV--LASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH--------HHHH--HHHHHHHHHHhcCCCchh
Confidence 3 1 22222333 223333479999999999887764321000 0000 012233444556666777
Q ss_pred HHHHHHHH
Q 009801 229 AFQILEYQ 236 (525)
Q Consensus 229 A~~~~~~~ 236 (525)
+++.++.+
T Consensus 198 ~~~~l~~~ 205 (608)
T PF10345_consen 198 VLELLQRA 205 (608)
T ss_pred HHHHHHHH
Confidence 77777665
No 356
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=52.55 E-value=79 Score=25.37 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-----------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 246 YKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----------------EPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 246 ~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
..+|...... +++-.++-+|++|+... ..-++.+||..+.. .+|.+-.++|++-
T Consensus 5 tllAd~a~~~-----~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~----~gd~~yELkYLql 75 (140)
T PF10952_consen 5 TLLADQAFKE-----ADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRS----QGDSDYELKYLQL 75 (140)
T ss_pred HHHHHHHhhc-----ccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHH----cCChHHHHHHHHH
Confidence 4456665555 37777888888876431 12345666666666 6666666666666
Q ss_pred HHH
Q 009801 309 AAR 311 (525)
Q Consensus 309 a~~ 311 (525)
|-+
T Consensus 76 ASE 78 (140)
T PF10952_consen 76 ASE 78 (140)
T ss_pred HHH
Confidence 654
No 357
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=52.06 E-value=3.4e+02 Score=29.29 Aligned_cols=206 Identities=16% Similarity=0.112 Sum_probs=116.9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHH--HHHHhCCCCCccCHHHHHHHHHHHHhCCCh----h
Q 009801 281 SMEFLGEIYARGAGVERNYTKALE-WLTHAARQQLYSAYNGIG--YLYVKGYGVEKKNYTKAKEYFEKAADNEEA----G 353 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~-~~~~a~~~~~~~a~~~lg--~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~----~ 353 (525)
+-..||.+... ..+ .+|++ .+.-+-+-.+......|| ..+.. -++-+.|-.+.++.+...+| .
T Consensus 469 Agi~MGl~mlG----t~~-~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~-----ygrqe~Ad~lI~el~~dkdpilR~~ 538 (929)
T KOG2062|consen 469 AGIAMGLLMLG----TAN-QEAIEDMLTYAQETQHEKIIRGLAVGIALVV-----YGRQEDADPLIKELLRDKDPILRYG 538 (929)
T ss_pred HHHhhhhHhhC----cCc-HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHH-----hhhhhhhHHHHHHHhcCCchhhhhh
Confidence 34556666554 333 33444 444443333433333333 22221 23556777787777765554 3
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHH----HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH----
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK----AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS---- 425 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~----a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~---- 425 (525)
..+.++..|.. .++..--...+--|+.-.+.+ |-..+|.++ -+|++.-....+-..+..++.
T Consensus 539 Gm~t~alAy~G----Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl------~~dp~~~~s~V~lLses~N~HVRyG 608 (929)
T KOG2062|consen 539 GMYTLALAYVG----TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVL------FRDPEQLPSTVSLLSESYNPHVRYG 608 (929)
T ss_pred hHHHHHHHHhc----cCchhhHHHhhcccccccchHHHHHHHHHheeeE------ecChhhchHHHHHHhhhcChhhhhh
Confidence 45677888876 555443333333333332221 223334433 457888777777766665433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--C--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL--G--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
+-..||..+.-.|+ .+|+..++....- + -..|+..+|++..+.-+. .-.++..=++.|.+.+-.
T Consensus 609 aA~ALGIaCAGtG~-~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~-----------~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 609 AAMALGIACAGTGL-KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ-----------LCPKVNGFRKQLEKVIND 676 (929)
T ss_pred HHHHHhhhhcCCCc-HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc-----------cCchHHHHHHHHHHHhhh
Confidence 33456665555664 6788887766552 1 233788888888764221 122456677778888877
Q ss_pred CCHHHHHHHHHHHHccc
Q 009801 502 GNEHAALLIGDAYYYGR 518 (525)
Q Consensus 502 ~~~~a~~~lg~~y~~g~ 518 (525)
.|.|.+..+|-+.--|+
T Consensus 677 KhEd~~aK~GAilAqGi 693 (929)
T KOG2062|consen 677 KHEDGMAKFGAILAQGI 693 (929)
T ss_pred hhhHHHHHHHHHHHhhh
Confidence 88999999998876554
No 358
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=51.18 E-value=27 Score=25.21 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++|+.+..+|++ .-..|++++|+.+|.++++.
T Consensus 5 ~~~A~~li~~Av~-------------~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 5 LSKAKELISKALK-------------ADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHH
Confidence 4555555555544 33367777888888777764
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=50.90 E-value=1.7e+02 Score=27.44 Aligned_cols=80 Identities=14% Similarity=0.029 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHH
Q 009801 370 RDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 370 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
..+..=+.-..++.+.....++..++..+.. .++++.+++.+++-++.+| ..++..+-..|+..|+...|+..|
T Consensus 135 ~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~----~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 135 DRFDEWVLEQRRALEELFIKALTKLAEALIA----CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 3355555555666666667777788888886 8889999999999999885 567778888899999999999999
Q ss_pred HHHHHc
Q 009801 448 SRMAEL 453 (525)
Q Consensus 448 ~~a~~~ 453 (525)
++....
T Consensus 211 ~~l~~~ 216 (280)
T COG3629 211 RQLKKT 216 (280)
T ss_pred HHHHHH
Confidence 887653
No 360
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=50.82 E-value=27 Score=25.13 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=13.1
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 009801 435 YLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 435 ~~~g~~~~A~~~~~~a~~~ 453 (525)
-..|++++|+.+|..|++.
T Consensus 17 D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 17 DEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 3447777777777777654
No 361
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=50.79 E-value=2.8e+02 Score=28.00 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.|++.++.-+-.=..+..| +.++..+|.+++...+|++|..++...-.
T Consensus 475 qgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred cccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 7899998877666666665 67888899999999999999999876543
No 362
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.71 E-value=1.4e+02 Score=27.98 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~ 383 (525)
.+++.++|..|.+ ..|.+.+.+|..+..
T Consensus 115 ~ea~~n~aeyY~q----i~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQ----IMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHH----HhhhhhHHHHHHHHH
Confidence 3445555555555 555555555554443
No 363
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.79 E-value=34 Score=30.79 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS 425 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 425 (525)
.+|.+-|.+.|.+++.. .....++.+|.+-+. .++++.|...|++.++.++.+
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek----ag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK----AGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh----cccHHHHHHHHHHHHcCCccc
Confidence 67777788888888777 566677788877776 788888888888888887543
No 364
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=49.73 E-value=47 Score=24.02 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++|+...++|++ .-..|++++|+.+|..+++.
T Consensus 3 l~~Ai~lv~~Av~-------------~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVK-------------KDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHH
Confidence 4566666666644 34556778888888777764
No 365
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=49.35 E-value=28 Score=25.12 Aligned_cols=13 Identities=31% Similarity=0.202 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHc
Q 009801 441 GKAFLLYSRMAEL 453 (525)
Q Consensus 441 ~~A~~~~~~a~~~ 453 (525)
++|+.++.+|++.
T Consensus 4 ~~A~~l~~~Av~~ 16 (75)
T cd02678 4 QKAIELVKKAIEE 16 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666554
No 366
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.97 E-value=2.5e+02 Score=26.94 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
.+++.+.|..|.+ .+|.+.|.+++.+..+. | -.-....+|..|..-.-+.+..++|...+++. ++
T Consensus 104 ~ea~~~kaeYycq----igDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G---gD 176 (393)
T KOG0687|consen 104 REAMLRKAEYYCQ----IGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG---GD 176 (393)
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC---CC
Confidence 4566677777777 77777777766655432 2 23345566666654222334445554444422 23
Q ss_pred hHHHHH----HHHHHHhcCCHHHHHHHHHHHHH
Q 009801 424 WSSLSR----WALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 424 ~~a~~~----l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++--++ -|.-...-.++++|-..+-.++.
T Consensus 177 WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 177 WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 332222 23333444566666666655553
No 367
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.71 E-value=2.4e+02 Score=30.77 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=24.0
Q ss_pred ccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 333 KKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
+||+++|..+|-+.+..-++.--. .-|.. .+...+-..|++...+.+
T Consensus 381 Kgdf~~A~~qYI~tI~~le~s~Vi---~kfLd----aq~IknLt~YLe~L~~~g 427 (933)
T KOG2114|consen 381 KGDFDEATDQYIETIGFLEPSEVI---KKFLD----AQRIKNLTSYLEALHKKG 427 (933)
T ss_pred cCCHHHHHHHHHHHcccCChHHHH---HHhcC----HHHHHHHHHHHHHHHHcc
Confidence 567777777777776553332211 11233 444445555555555443
No 368
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=48.54 E-value=50 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=14.3
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 009801 434 SYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~ 453 (525)
.-..|++++|+.+|.+|++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 16 EDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 44567788888888777764
No 369
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=47.38 E-value=31 Score=24.94 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHc
Q 009801 440 VGKAFLLYSRMAEL 453 (525)
Q Consensus 440 ~~~A~~~~~~a~~~ 453 (525)
+++|+.+..+|++.
T Consensus 5 ~~~A~~li~~Av~~ 18 (77)
T smart00745 5 LSKAKELISKALKA 18 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777655
No 370
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=47.02 E-value=41 Score=24.33 Aligned_cols=14 Identities=21% Similarity=-0.052 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHcC
Q 009801 441 GKAFLLYSRMAELG 454 (525)
Q Consensus 441 ~~A~~~~~~a~~~~ 454 (525)
.+|+..+.+|++.+
T Consensus 4 ~~A~~l~~~Ave~d 17 (75)
T cd02677 4 EQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777776654
No 371
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=46.18 E-value=61 Score=31.76 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHc
Q 009801 335 NYTKAKEYFEKAADNEEAGGHYNLGVMYYK 364 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 364 (525)
-..+|++|+++|....+|+.|..+|.++..
T Consensus 333 l~~~Al~yL~kA~d~ddPetWv~vAEa~I~ 362 (404)
T PF12753_consen 333 LIKKALEYLKKAQDEDDPETWVDVAEAMID 362 (404)
T ss_dssp HHHHHHHHHHHHHHS--TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHhh
Confidence 466788888888887777777766666554
No 372
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.03 E-value=49 Score=32.87 Aligned_cols=58 Identities=16% Similarity=-0.044 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH------Hc----ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHH
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMA------EL----GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLW 495 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~------~~----~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 495 (525)
+...|..++..+|||..|++.++..- -. -+...++.+|.+|.. .+||.+|++.|
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylM----------------lrRY~DAir~f 187 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLM----------------LRRYADAIRTF 187 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHH----------------HHHHHHHHHHH
Confidence 34456777888999999998876431 11 255678889999988 88999999999
Q ss_pred HHHH
Q 009801 496 WQAS 499 (525)
Q Consensus 496 ~~a~ 499 (525)
...+
T Consensus 188 ~~iL 191 (404)
T PF10255_consen 188 SQIL 191 (404)
T ss_pred HHHH
Confidence 9765
No 373
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=45.15 E-value=60 Score=31.84 Aligned_cols=49 Identities=10% Similarity=-0.041 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHcC
Q 009801 406 KNLHMATALYKLVAERGPWSSLSRWALESYLKG------------DVGKAFLLYSRMAELG 454 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g------------~~~~A~~~~~~a~~~~ 454 (525)
.-..+|+.|+++|.....|+.|..+|.++..+| -|++|...+.+|-..+
T Consensus 332 ~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 332 ELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 456789999999988888888888888877776 3566666666666553
No 374
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=44.19 E-value=3.5e+02 Score=27.21 Aligned_cols=153 Identities=12% Similarity=-0.036 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCC-C----c----cCHHHHHHHH
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--------LYSAYNGIGYLYVKGYGV-E----K----KNYTKAKEYF 343 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~-~----~----~~~~~A~~~~ 343 (525)
....||++++. .+||+.|...|+.+.+.= .+.++...|.....+... . + .-++.|...|
T Consensus 210 q~R~LAD~aFm----l~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 210 QMRRLADLAFM----LRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred HHHHHHHHHHH----HccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 34568888887 888888888888875421 233444444444432211 1 1 1234455555
Q ss_pred HHHHh----C--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc------C---CHHHHHHHHHHH--HcCCCC-c
Q 009801 344 EKAAD----N--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA------G---HQKAFYQLAKMF--HTGVGL-K 405 (525)
Q Consensus 344 ~~a~~----~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~---~~~a~~~l~~~y--~~g~g~-~ 405 (525)
.++.. . .-..+....+.++.. .+.+.+|..++-+.... + .+..+-.++.+| ...... .
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~----~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~ 361 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKS----RGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSP 361 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHh----cCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCc
Confidence 55321 1 122344556666666 67776766655544432 2 333444455555 221110 0
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 406 K--NLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 406 ~--~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+ +..|+--++ ..-|.-|...|+...|+.+|.+|...
T Consensus 362 ~~~r~RK~af~~------------vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 362 GLTRFRKYAFHM------------VLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred cchhhHHHHHHH------------HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0 122222111 22356688999999999999998764
No 375
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.85 E-value=1.2e+02 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh
Q 009801 226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (525)
Q Consensus 226 ~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (525)
.++||.+.+++++.+++ ++|++|+.+|..+++
T Consensus 7 l~kaI~lv~kA~~eD~a------------------~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNA------------------KNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHHHHHHhhhcch------------------hchHHHHHHHHHHHH
Confidence 46788888888776543 467777777766665
No 376
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=43.49 E-value=46 Score=18.32 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+-..+.+.|+.++|...+++-.+.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhHC
Confidence 34445566777777777777665543
No 377
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.25 E-value=1.4e+02 Score=22.42 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=25.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (525)
.+|++.++.+.++..+...+ +++.|+..+-..+..
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g-----~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAG-----DYEEALDQLLELVRR 51 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT------HHHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHh
Confidence 45578888888888887774 888888888888765
No 378
>PF13041 PPR_2: PPR repeat family
Probab=42.46 E-value=42 Score=21.61 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~ 189 (525)
+...+..+-..|.+.+++++|.++|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3456677778888899999999999988764
No 379
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.06 E-value=2.9e+02 Score=25.68 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCCCc---cCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLR---RDRTKALMWFSK-AADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHA 309 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~---~~~~~A~~~~~~-a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a 309 (525)
+.+..-.|..+........+ .=..+|++|-+. .-+.|++..+..+|..|.. .+++.+|..+|-.+
T Consensus 48 ~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 48 DEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLLG 116 (260)
T ss_dssp SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHhc
Confidence 34444556665544421111 114567777711 1234889999999999999 89999998887654
No 380
>PF13041 PPR_2: PPR repeat family
Probab=41.53 E-value=73 Score=20.42 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
..+..+-..+.+.|++++|.+.|++-.+.|
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 345566677888889999999998888775
No 381
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=41.42 E-value=1.9e+02 Score=24.23 Aligned_cols=67 Identities=12% Similarity=-0.000 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCC
Q 009801 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGE 471 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~ 471 (525)
..+.+++...+...--+.| +....--|+++...|++.+|+..+....+.+ .+.+.-.+++++.-.||
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 4556666666554444433 4455566777778888888888887777663 35566667777776555
No 382
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.28 E-value=4.3e+02 Score=27.82 Aligned_cols=53 Identities=19% Similarity=0.086 Sum_probs=40.4
Q ss_pred hhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc
Q 009801 216 KGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (525)
.-.+..+.|+++.|.++. .+.++..-+-.||......+ ++..|.++|.++-+.
T Consensus 643 rFelal~lgrl~iA~~la---~e~~s~~Kw~~Lg~~al~~~-----~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 643 RFELALKLGRLDIAFDLA---VEANSEVKWRQLGDAALSAG-----ELPLASECFLRARDL 695 (794)
T ss_pred hhhhhhhcCcHHHHHHHH---HhhcchHHHHHHHHHHhhcc-----cchhHHHHHHhhcch
Confidence 444556777888887664 45567778889999988774 999999999998654
No 383
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.71 E-value=5.3e+02 Score=28.32 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHH--HH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH--YN 357 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~--~~ 357 (525)
..+...|..++. +||+++|+.+|-+++..-.+.- -+-..+ . .....+-..|++...+.+-+... ..
T Consensus 369 ~i~~kYgd~Ly~----Kgdf~~A~~qYI~tI~~le~s~--Vi~kfL-d-----aq~IknLt~YLe~L~~~gla~~dhttl 436 (933)
T KOG2114|consen 369 EIHRKYGDYLYG----KGDFDEATDQYIETIGFLEPSE--VIKKFL-D-----AQRIKNLTSYLEALHKKGLANSDHTTL 436 (933)
T ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHcccCChHH--HHHHhc-C-----HHHHHHHHHHHHHHHHcccccchhHHH
Confidence 445556776666 8899999999999876543221 111111 1 22555556667776666544332 34
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 358 LGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 358 lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
|=.+|.. .++.++-.++..+
T Consensus 437 LLncYiK----lkd~~kL~efI~~ 456 (933)
T KOG2114|consen 437 LLNCYIK----LKDVEKLTEFISK 456 (933)
T ss_pred HHHHHHH----hcchHHHHHHHhc
Confidence 5567777 6776665555443
No 384
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.06 E-value=5.3e+02 Score=27.89 Aligned_cols=304 Identities=13% Similarity=0.131 Sum_probs=167.8
Q ss_pred cccccCCCCCc-ccccCCCCCCCccccCCCC--------CCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH-hc
Q 009801 52 DWDDFGDSESM-TEENLDPGSWSPVFEPSID--------PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-ME 121 (525)
Q Consensus 52 ~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~--------~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~ 121 (525)
+|..|..-... ....++..++.++.+..+- ..+..|+|.+|.++... + .....++.+-. +.
T Consensus 355 NWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~h-------G--~~~~~yL~~~Lk~~ 425 (929)
T KOG2062|consen 355 NWAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANH-------G--RGITDYLLQQLKTA 425 (929)
T ss_pred hHhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCc-------C--ccHHHHHHHHHHhc
Confidence 45555544333 5555666666655555422 23467889999987741 1 12455555533 22
Q ss_pred CChHHH----HHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Q 009801 122 GDPHAR----SVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (525)
Q Consensus 122 ~~~~a~----~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~----~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~ 193 (525)
.+.... ..+|.. |+| ..+ .+-.+-.+..+..++. .|-+.+|.+.+...+. +|++-....+....-.
T Consensus 426 ~~e~v~hG~cLGlGLa---~mG-Sa~-~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-eaiedm~~Ya~ETQHe 499 (929)
T KOG2062|consen 426 ENEVVRHGACLGLGLA---GMG-SAN-EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-EAIEDMLTYAQETQHE 499 (929)
T ss_pred cchhhhhhhhhhccch---hcc-ccc-HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-HHHHHHHHHhhhhhHH
Confidence 333332 333333 222 111 1122222333333332 4556777777665543 4444333222110000
Q ss_pred hhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCH----HHHHHHHHHHHhcCCCCccCHHHHHHH
Q 009801 194 FLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA----GAMYKIGLFYYFGLRGLRRDRTKALMW 269 (525)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~a~~~Lg~~y~~~~~~~~~~~~~A~~~ 269 (525)
.+++ ....+......|+.++|-.+.++.....+| ..++.++..|.-.+ +..--..+
T Consensus 500 -------ki~R--------Gl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-----nnkair~l 559 (929)
T KOG2062|consen 500 -------KIIR--------GLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG-----NNKAIRRL 559 (929)
T ss_pred -------HHHH--------HHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-----chhhHHHh
Confidence 0000 112333444556666777777777665554 45778888887663 44333333
Q ss_pred HHHHHhcCCHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhCCCCCccCHHHHHH
Q 009801 270 FSKAADKGEPQ----SMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYN----GIGYLYVKGYGVEKKNYTKAKE 341 (525)
Q Consensus 270 ~~~a~~~~~~~----a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~----~lg~~~~~g~~~~~~~~~~A~~ 341 (525)
+--|+.-.+-+ |-..||.+++ +|++.-....+-..+.-++...+ .||..... . =..+|+.
T Consensus 560 Lh~aVsD~nDDVrRaAVialGFVl~------~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAG-----t-G~~eAi~ 627 (929)
T KOG2062|consen 560 LHVAVSDVNDDVRRAAVIALGFVLF------RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAG-----T-GLKEAIN 627 (929)
T ss_pred hcccccccchHHHHHHHHHheeeEe------cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcC-----C-CcHHHHH
Confidence 33344433322 3344565554 48888888877777776665544 45555532 2 2458899
Q ss_pred HHHHHHhCC----ChhHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 009801 342 YFEKAADNE----EAGGHYNLGVMYYKGI-GVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGV 402 (525)
Q Consensus 342 ~~~~a~~~~----~~~a~~~lg~~y~~g~-~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~ 402 (525)
.++....-- .-.|+..+|++..+.. ....+...-.+.|.+.+...+.+.+..+|.+...|+
T Consensus 628 lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqGi 693 (929)
T KOG2062|consen 628 LLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQGI 693 (929)
T ss_pred HHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence 888877521 2347778888887743 334567777888888888889999999999998876
No 385
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=38.92 E-value=1.7e+02 Score=23.56 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=46.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCH
Q 009801 163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA 242 (525)
Q Consensus 163 ~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 242 (525)
+..+|...++.+++-.++-.|++++......... .....+ +.+ .-..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~-------------------------~~~el~---dll-----~i~V 50 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDES-------------------------NEIELE---DLL-----TISV 50 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccc-------------------------ccccHH---HHH-----HHHH
Confidence 3456777777888888888888887653332100 000000 000 0124
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc
Q 009801 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (525)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (525)
..+.+|+..+...+ |.+-.++|++-|.+.
T Consensus 51 isCHNLA~FWR~~g-----d~~yELkYLqlASE~ 79 (140)
T PF10952_consen 51 ISCHNLADFWRSQG-----DSDYELKYLQLASEK 79 (140)
T ss_pred HHHhhHHHHHHHcC-----ChHHHHHHHHHHHHH
Confidence 56788999998774 888888999887664
No 386
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=38.85 E-value=4.6e+02 Score=27.04 Aligned_cols=149 Identities=11% Similarity=0.008 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHH
Q 009801 298 NYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKL 374 (525)
Q Consensus 298 ~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~ 374 (525)
...-..+.+.+.++.+ +..++..++.+|.. . ..++-....++.++.. +..---.|+..|.+ .+.++
T Consensus 81 k~~~veh~c~~~l~~~e~kmal~el~q~y~e-----n-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-----ik~sk 149 (711)
T COG1747 81 KNQIVEHLCTRVLEYGESKMALLELLQCYKE-----N-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-----IKKSK 149 (711)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-----c-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-----hchhh
Confidence 4555667788888776 77888999999965 3 5567777888887764 44445568888875 67788
Q ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHcCCC-CcCCHHHHHHHHHHHHHc-CC--hHHHHHHH-HHHHhcCCHHHHHHHHH
Q 009801 375 ACKYFLVAANAGHQ-KAFYQLAKMFHTGVG-LKKNLHMATALYKLVAER-GP--WSSLSRWA-LESYLKGDVGKAFLLYS 448 (525)
Q Consensus 375 A~~~~~~a~~~~~~-~a~~~l~~~y~~g~g-~~~~~~~A~~~~~~a~~~-~~--~~a~~~l~-~~~~~~g~~~~A~~~~~ 448 (525)
+..+|.+++..--+ .-+..+-.+...-.. +..|.+.-+...++.-+. +. ....+.-- .-|-...|+++|++.+.
T Consensus 150 ~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk 229 (711)
T COG1747 150 AAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILK 229 (711)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 88899988854111 101111111111000 244556555555554332 22 22222222 23445668888888888
Q ss_pred HHHHcChHH
Q 009801 449 RMAELGYEV 457 (525)
Q Consensus 449 ~a~~~~~~~ 457 (525)
-.++.++.+
T Consensus 230 ~il~~d~k~ 238 (711)
T COG1747 230 HILEHDEKD 238 (711)
T ss_pred HHhhhcchh
Confidence 888776444
No 387
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=38.47 E-value=74 Score=17.84 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
..+-..+.+.|++++|...|.+..+.|
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 344556788888888888888776554
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.32 E-value=1.1e+02 Score=26.80 Aligned_cols=49 Identities=24% Similarity=0.215 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 405 KKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
....+..+++.++.+...| +..+.+++.++...|+.++|..+.+++...
T Consensus 124 ~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 124 PEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445556666676666654 566677888888888888888888877765
No 389
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.47 E-value=64 Score=23.64 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=11.2
Q ss_pred cCCHHHHHHHHHHHHc
Q 009801 141 ERNKGKAFLYHHFAAE 156 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~ 156 (525)
.++.++|+.+|+++++
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4577777777777764
No 390
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.98 E-value=2e+02 Score=30.87 Aligned_cols=19 Identities=16% Similarity=-0.055 Sum_probs=13.9
Q ss_pred ccCHHHHHHHHHHHHhcCC
Q 009801 260 RRDRTKALMWFSKAADKGE 278 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~~~ 278 (525)
.+|+.+|+..-++..++..
T Consensus 379 And~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred ccCHHHHHHHHHHHhccCC
Confidence 3588888888877777653
No 391
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.74 E-value=2e+02 Score=26.44 Aligned_cols=75 Identities=15% Similarity=-0.017 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHhccccHHH
Q 009801 108 MEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----G----NIQSKMAVAYTYLRQDMHDK 178 (525)
Q Consensus 108 ~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~----~~~a~~~la~~y~~~~~~~~ 178 (525)
+.+|...|++.... --......+|..|.. .+|+++|.++|+.+... | ....+..|..++...++.+.
T Consensus 161 L~~A~~~f~~~~~~R~~~~l~~~~A~ey~~----~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~ 236 (247)
T PF11817_consen 161 LEKAYEQFKKYGQNRMASYLSLEMAEEYFR----LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVED 236 (247)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 44555555542221 223445678998998 89999999999998642 3 23556677788888888888
Q ss_pred HHHHHHHH
Q 009801 179 AVKLYAEL 186 (525)
Q Consensus 179 A~~~y~~~ 186 (525)
.+.+--++
T Consensus 237 ~l~~~leL 244 (247)
T PF11817_consen 237 YLTTSLEL 244 (247)
T ss_pred HHHHHHHH
Confidence 77765443
No 392
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.40 E-value=4.3e+02 Score=29.24 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYN 319 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 319 (525)
.++...+.|+.-+ +|.+.|++. |-+.+++..|..||.-... +++.+-|.-+|++.-. ..
T Consensus 644 kD~~tRF~LaLe~--------gnle~ale~---akkldd~d~w~rLge~Al~----qgn~~IaEm~yQ~~kn------fe 702 (1202)
T KOG0292|consen 644 KDERTRFELALEC--------GNLEVALEA---AKKLDDKDVWERLGEEALR----QGNHQIAEMCYQRTKN------FE 702 (1202)
T ss_pred cCcchheeeehhc--------CCHHHHHHH---HHhcCcHHHHHHHHHHHHH----hcchHHHHHHHHHhhh------hh
Confidence 4566667776655 488877654 4456889999999999998 9999999999988532 24
Q ss_pred HHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHH
Q 009801 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGV 360 (525)
Q Consensus 320 ~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 360 (525)
.|..+|.- .|+.++-.+..+.|-..++..+++.-+.
T Consensus 703 kLsfLYli-----Tgn~eKL~Km~~iae~r~D~~~~~qnal 738 (1202)
T KOG0292|consen 703 KLSFLYLI-----TGNLEKLSKMMKIAEIRNDATGQFQNAL 738 (1202)
T ss_pred heeEEEEE-----eCCHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 55666654 4588888888777766677776665443
No 393
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.38 E-value=1.6e+02 Score=31.52 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAEL 186 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~ 186 (525)
+++.-.++-..|...+||+.-+++-+.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~L 227 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDL 227 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHH
Confidence 4466677777787788888776665544
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.17 E-value=66 Score=31.99 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=50.9
Q ss_pred cCChHHHHHHHHhhhcCCC----ccCCHHHHHHHHHHHH----------cCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 009801 121 EGDPHARSVLGFLYGMGMM----RERNKGKAFLYHHFAA----------EGGNIQSKMAVAYTYLRQDMHDKAVKLYAEL 186 (525)
Q Consensus 121 ~~~~~a~~~lg~~y~~g~g----~~~d~~~A~~~~~~a~----------~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~ 186 (525)
.|....+..||..-.-|+- ..||+..|++.++-.- ..-++...+.+|..|+-.++|.+|++.|..+
T Consensus 111 ~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 111 YGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred cccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777765554432 4789999999876431 1126678899999999999999999999988
Q ss_pred HH
Q 009801 187 AE 188 (525)
Q Consensus 187 ~~ 188 (525)
+-
T Consensus 191 L~ 192 (404)
T PF10255_consen 191 LL 192 (404)
T ss_pred HH
Confidence 64
No 395
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.16 E-value=2.6e+02 Score=22.55 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 410 MATALYKLVAERG----PWSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 410 ~A~~~~~~a~~~~----~~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
.+.+.|+.....+ .+..+...|..+...|++++|...|++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 6666666665543 24455567777788888888888887764
No 396
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=29.47 E-value=6.2e+02 Score=25.73 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 009801 369 KRDVKLACKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-WSSLSRWALESY 435 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~ 435 (525)
.|++.++..+-.=.++. .++.++.-+|.+... .++|++|..++...-.... .++...-|.+++
T Consensus 475 qgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e----~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLME----NKRYQEAWEYLQKLPPNERMRDSKVQKALALC 539 (549)
T ss_pred cccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH----HhhHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 78899988665544444 478899999999987 8999999999986543221 334444444444
No 397
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.44 E-value=5.2e+02 Score=24.84 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHH
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEW 305 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~ 305 (525)
....||.+|.. .++++.|-..
T Consensus 105 irl~LAsiYE~----Eq~~~~aaq~ 125 (399)
T KOG1497|consen 105 IRLHLASIYEK----EQNWRDAAQV 125 (399)
T ss_pred HHHHHHHHHHH----hhhHHHHHHH
Confidence 34455555555 5555554433
No 398
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=29.31 E-value=1.9e+02 Score=29.90 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-------CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~ 384 (525)
.|.|+.+||.+-... ...+-..++.+|.+|+.. .+..-+..+|-.|.+ .+++.+|+..+-.|++
T Consensus 276 YPmALg~LadLeEi~---pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR----~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 276 YPMALGNLADLEEID---PTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR----HKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHS-----TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhc---cCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH----HHHHHHHHHHHHHHHH
Confidence 455566666665431 111334556666666643 345566777777777 7888888877776654
No 399
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.99 E-value=3.5e+02 Score=25.72 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=8.3
Q ss_pred HHHcccccCCCC
Q 009801 513 AYYYGRVRHSEG 524 (525)
Q Consensus 513 ~y~~g~g~~~~~ 524 (525)
+.+.|.|++.||
T Consensus 258 VQMqGVG~d~~g 269 (439)
T KOG0739|consen 258 VQMQGVGNDNDG 269 (439)
T ss_pred HhhhccccCCCc
Confidence 445688887777
No 400
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=26.72 E-value=4e+02 Score=22.66 Aligned_cols=81 Identities=11% Similarity=0.006 Sum_probs=52.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
..|+.++.-..-|.++... +++.+|+..|+..... +.+.+.-.++.++.. .+|.+-= .+=.++++.+
T Consensus 39 LRP~~~e~~~~~~~l~i~r-----~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~----~~D~~Wr-~~A~evle~~~ 108 (160)
T PF09613_consen 39 LRPEFPELDLFDGWLHIVR-----GDWDDALRLLRELEERAPGFPYAKALLALCLYA----LGDPSWR-RYADEVLESGA 108 (160)
T ss_pred hCCCchHHHHHHHHHHHHh-----CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH----cCChHHH-HHHHHHHhcCC
Confidence 5667777778888888777 4888888888887654 456666677777776 6665421 1222344444
Q ss_pred CHHHHHHHHHHHHh
Q 009801 314 LYSAYNGIGYLYVK 327 (525)
Q Consensus 314 ~~~a~~~lg~~~~~ 327 (525)
++.+...+..+...
T Consensus 109 d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 109 DPDARALVRALLAR 122 (160)
T ss_pred ChHHHHHHHHHHHh
Confidence 66666666665543
No 401
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=26.44 E-value=9.2e+02 Score=26.77 Aligned_cols=215 Identities=13% Similarity=-0.018 Sum_probs=116.9
Q ss_pred hHhhhccCCcHHHHHHHHHHHHc---------CC--HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-------C
Q 009801 217 GALRKSRGEDDEAFQILEYQAQK---------GN--AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-------E 278 (525)
Q Consensus 217 ~~~~~~~~~~~~A~~~~~~~~~~---------~~--~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-------~ 278 (525)
+-......++.+|..+..+.... ++ +...-.-|.+-... +++++|+++-+.++..- .
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~-----~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNR-----GDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcccccchhh
Confidence 33445677888888887776432 11 12333334444444 49999999999998761 2
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----C--C--HHHHHHHHHHHHhCCCCCcc--CHHHHHHHHHHHHh
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----Q--L--YSAYNGIGYLYVKGYGVEKK--NYTKAKEYFEKAAD 348 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~--~--~~a~~~lg~~~~~g~~~~~~--~~~~A~~~~~~a~~ 348 (525)
..+...+|.+..- .|++++|..+.+++-+. + + .-+...-+.+... +| .+.+...-+...-.
T Consensus 497 ~~~~sv~~~a~~~----~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~-----qGq~~~a~~~~~~~~~~~ 567 (894)
T COG2909 497 IVALSVLGEAAHI----RGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA-----QGQVARAEQEKAFNLIRE 567 (894)
T ss_pred hhhhhhhhHHHHH----hchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHH
Confidence 3456667777776 99999999999988765 2 1 1122333444432 22 23333333332211
Q ss_pred C----C--ChhHH---HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 349 N----E--EAGGH---YNLGVMYYKGIGVKRDVKLACKYFLVAANAG-H----QKAFYQLAKMFHTGVGLKKNLHMATAL 414 (525)
Q Consensus 349 ~----~--~~~a~---~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~l~~~y~~g~g~~~~~~~A~~~ 414 (525)
. . ..... ..+.+.+.+ ......++..+++-..... + .-+...|+.++.. .||.++|...
T Consensus 568 q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~----~Gdl~~A~~~ 640 (894)
T COG2909 568 QHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL----RGDLDKALAQ 640 (894)
T ss_pred HHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh----cCCHHHHHHH
Confidence 1 1 11111 222222222 1233334444444333221 1 1223466777776 8999999998
Q ss_pred HHHHHHcC-----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 415 YKLVAERG-----P----WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 415 ~~~a~~~~-----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
........ + ..++.-.......+||..+|..+..+...
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 88876542 1 11222223335568899999999888543
No 402
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.17 E-value=1.9e+02 Score=22.26 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 423 PWSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 423 ~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++-.+.+||.+|...|+.+.|++-|+.--.
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 567788899999999999988888864433
No 403
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=26.16 E-value=5.6e+02 Score=26.53 Aligned_cols=51 Identities=10% Similarity=-0.163 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh
Q 009801 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 455 (525)
.++.-.|+.-...|++.++ ..++++|+..+...+++.+|+.....+.....
T Consensus 424 ~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 424 RGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred cccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 4566777777777777775 56888888888888888888887765554433
No 404
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.14 E-value=7.6e+02 Score=26.11 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
.+++-.+.|+.-+ ++++.|..+. .+.++..=|..||.+... .+++..|.++|.++-+.
T Consensus 638 ~D~d~rFelal~l--------grl~iA~~la---~e~~s~~Kw~~Lg~~al~----~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 638 TDPDQRFELALKL--------GRLDIAFDLA---VEANSEVKWRQLGDAALS----AGELPLASECFLRARDL 695 (794)
T ss_pred CChhhhhhhhhhc--------CcHHHHHHHH---HhhcchHHHHHHHHHHhh----cccchhHHHHHHhhcch
Confidence 5666666666544 4677665543 445667778888888888 88899999988887543
No 405
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.14 E-value=6e+02 Score=24.46 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CC--------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GH--------QKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~--------~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a 418 (525)
....|+.+|.. .+++..|...+.-.-.. |. ..-+..+|.+|.. .++..+|..+..++
T Consensus 105 irl~LAsiYE~----Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe----~~d~veae~~inRa 170 (399)
T KOG1497|consen 105 IRLHLASIYEK----EQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLE----DDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHH----hhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHH
Confidence 44567777777 66666666655421111 11 1234455556655 55566666665555
No 406
>PRK10941 hypothetical protein; Provisional
Probab=25.29 E-value=4.2e+02 Score=24.83 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
..+|=.+|.+ .+++++|+...++.+.. +++.-+...|.+|.. .+.+..|..-++.-++.-|
T Consensus 184 l~nLK~~~~~----~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q----L~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALME----EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ----LDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHH----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCC
Confidence 3456667777 77888888777777665 566666667777776 7777788777777776653
No 407
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.27 E-value=5.1e+02 Score=28.70 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=77.3
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC------------------ccCCH
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMM------------------RERNK 144 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g------------------~~~d~ 144 (525)
++.+-.|.++.+ .++|++-+...+.+.-.| +..++++-..|.. --++.
T Consensus 594 DptEy~FKlALi----------~k~ydeVl~lI~ns~LvG----qaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnl 659 (1202)
T KOG0292|consen 594 DPTEYRFKLALL----------NKKYDEVLHLIKNSNLVG----QAIIAYLQKKGYPEIALHFVKDERTRFELALECGNL 659 (1202)
T ss_pred chHHHHHHHHHH----------hhhhHHHHHHHHhcCccc----HHHHHHHHhcCCcceeeeeecCcchheeeehhcCCH
Confidence 345666777763 555777766665532222 2333333333321 02455
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccC
Q 009801 145 GKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG 224 (525)
Q Consensus 145 ~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (525)
+.|++ .|...++++....||..-+.+|+.+-|...|++.-.- ..+..+|.-.|
T Consensus 660 e~ale---~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf------------------------ekLsfLYliTg 712 (1202)
T KOG0292|consen 660 EVALE---AAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNF------------------------EKLSFLYLITG 712 (1202)
T ss_pred HHHHH---HHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh------------------------hheeEEEEEeC
Confidence 55544 3444578899999999999999999999999886432 23445566677
Q ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHH
Q 009801 225 EDDEAFQILEYQAQKGNAGAMYKIGL 250 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~a~~~Lg~ 250 (525)
+.++--+....+-..++...++.-+.
T Consensus 713 n~eKL~Km~~iae~r~D~~~~~qnal 738 (1202)
T KOG0292|consen 713 NLEKLSKMMKIAEIRNDATGQFQNAL 738 (1202)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 77776666665545566666655443
No 408
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=25.19 E-value=2.9e+02 Score=28.67 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
..|.|+-+||.+-.-. ...+-..++.+|.+|+.. .+..-+..+|..|.+ .+++.+|+..+-.|..
T Consensus 275 ~YPmALg~LadLeEi~---pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR----~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 275 RYPMALGNLADLEEID---PTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR----HKRYREALRSWAEAAD 346 (618)
T ss_dssp T-HHHHHHHHHHHHHS-----TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhc---cCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH----HHHHHHHHHHHHHHHH
Confidence 4699999999987533 223456678999998864 344567778888888 8999999999988854
No 409
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.16 E-value=3.5e+02 Score=24.81 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHHHHHH
Q 009801 89 YYITISKMMSAVTNGDVRVMEEATSEVES 117 (525)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~ 117 (525)
|.+.+.++. .++...|+..+++
T Consensus 14 ~ki~rl~l~-------~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 14 FKICRLYLW-------LNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHHHHh-------CCCHHHHHHHHHH
Confidence 455555665 5567777777776
No 410
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=23.62 E-value=2.1e+02 Score=22.08 Aligned_cols=40 Identities=28% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 414 LYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 414 ~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++..+..|+..+.+.-+.-..+.||+++|.+.+++|-+.
T Consensus 7 ~~~iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~ 46 (99)
T TIGR00823 7 GFELIAYAGDARSKALEALKAAKAGDFAKARALVEQAGMC 46 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444556677777777777788899999998888887654
No 411
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=22.35 E-value=2.3e+02 Score=21.77 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=28.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 415 YKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 415 ~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++..+..|+..+.+.-+.-..+.|++++|...+++|-+.
T Consensus 6 ~~iI~~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~ 44 (97)
T cd00215 6 FQIILHAGNARSKALEALKAAKEGDFAEAEELLEEANDS 44 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455567777777777788889999999888888654
No 412
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.10 E-value=8e+02 Score=24.53 Aligned_cols=95 Identities=12% Similarity=-0.014 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHH---HHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFL---VAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER- 421 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~---~a~~~~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~- 421 (525)
.+..++.+..+|.. .++...-...+. +.+.++ .+...+.|=.+|.+ .+-++.|-....++.--
T Consensus 168 ~ak~~fy~~l~~E~----~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~----n~lydqa~~lvsK~~~pe 239 (493)
T KOG2581|consen 168 AAKLYFYLYLSYEL----EGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLH----NKLYDQADKLVSKSVYPE 239 (493)
T ss_pred HHHHHHHHHHHHHh----hcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhh----hHHHHHHHHHhhcccCcc
Confidence 34566777777777 665444333332 233332 23344555556665 67788888877777511
Q ss_pred ---CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 422 ---GP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 422 ---~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++ +.-.+.+|.+...+++|..|.+++-+|+..
T Consensus 240 ~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 240 AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 11 334557788888888888888888888754
No 413
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.23 E-value=3.9e+02 Score=25.86 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=21.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Q 009801 162 SKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (525)
Q Consensus 162 a~~~la~~y~~~~~~~~A~~~y~~~~~~ 189 (525)
..+.+|.-|+..+|++.|.--|+++.+.
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 3455677788889999999999888654
No 414
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=20.43 E-value=2.5e+02 Score=21.89 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=29.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 414 LYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 414 ~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++..+..|+....+.-+.-..+.||+++|...+++|-+.
T Consensus 10 ~~~II~~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~ 49 (104)
T PRK09591 10 AFEIILHSGNARTEVHEAFAAMREGNFDLAEQKLNQSNEE 49 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555677777777777788888998888888887654
No 415
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.19 E-value=3.1e+02 Score=21.19 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
|-.+-.||.+|.+ .++.+.|.+-|+.
T Consensus 72 PG~HAhLGlLys~----~G~~e~a~~eFet 97 (121)
T COG4259 72 PGYHAHLGLLYSN----SGKDEQAVREFET 97 (121)
T ss_pred CcHHHHHHHHHhh----cCChHHHHHHHHH
Confidence 4567778888888 8888888777765
No 416
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=20.00 E-value=9.9e+02 Score=24.79 Aligned_cols=76 Identities=11% Similarity=-0.022 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHH
Q 009801 108 MEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYA 184 (525)
Q Consensus 108 ~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~ 184 (525)
..--.+...+...- .+.-+++.++.+|.+ . ..++-...+++.++. ++..--..|+..|.. .+-.++..+|.
T Consensus 82 ~~~veh~c~~~l~~~e~kmal~el~q~y~e----n-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~ 155 (711)
T COG1747 82 NQIVEHLCTRVLEYGESKMALLELLQCYKE----N-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFG 155 (711)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHh----c-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHH
Confidence 34444455554443 567889999999997 4 556677788887765 455666788888877 88899999999
Q ss_pred HHHHH
Q 009801 185 ELAEI 189 (525)
Q Consensus 185 ~~~~~ 189 (525)
+++..
T Consensus 156 Ka~yr 160 (711)
T COG1747 156 KALYR 160 (711)
T ss_pred HHHHH
Confidence 99875
Done!