Query 009801
Match_columns 525
No_of_seqs 353 out of 3260
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:18:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xm6_A Protein corresponding t 100.0 1.2E-47 4.2E-52 394.4 46.8 384 73-523 27-418 (490)
2 2xm6_A Protein corresponding t 100.0 7.1E-44 2.4E-48 366.4 48.4 352 107-523 22-382 (490)
3 3e4b_A ALGK; tetratricopeptide 100.0 5.2E-40 1.8E-44 333.0 31.2 381 89-515 7-401 (452)
4 3e4b_A ALGK; tetratricopeptide 100.0 4.6E-41 1.6E-45 340.7 21.7 390 67-499 17-419 (452)
5 1w3b_A UDP-N-acetylglucosamine 100.0 6.4E-32 2.2E-36 268.7 42.8 361 90-515 4-384 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-31 7.2E-36 264.9 35.2 355 66-469 12-386 (388)
7 1ouv_A Conserved hypothetical 100.0 2E-30 6.7E-35 244.9 34.6 256 120-431 2-261 (273)
8 1ouv_A Conserved hypothetical 100.0 1.9E-30 6.5E-35 245.0 33.4 260 238-515 2-265 (273)
9 2gw1_A Mitochondrial precursor 100.0 7.2E-28 2.5E-32 248.1 33.8 381 84-513 5-492 (514)
10 2xpi_A Anaphase-promoting comp 100.0 5.1E-27 1.7E-31 246.8 39.1 399 67-515 98-595 (597)
11 3rjv_A Putative SEL1 repeat pr 100.0 1.5E-27 5.2E-32 216.0 24.6 199 227-432 3-208 (212)
12 3rjv_A Putative SEL1 repeat pr 100.0 3E-27 1E-31 214.1 24.2 200 145-397 3-209 (212)
13 3fp2_A TPR repeat-containing p 100.0 1.3E-25 4.4E-30 232.8 36.3 368 85-502 25-492 (537)
14 4g1t_A Interferon-induced prot 100.0 2.9E-26 9.8E-31 233.9 30.3 352 122-512 49-472 (472)
15 2y4t_A DNAJ homolog subfamily 100.0 3.6E-25 1.2E-29 224.2 36.6 316 108-513 8-372 (450)
16 2gw1_A Mitochondrial precursor 100.0 2.1E-25 7.3E-30 229.6 34.2 341 123-515 5-460 (514)
17 3ieg_A DNAJ homolog subfamily 99.9 2.4E-24 8.4E-29 210.6 39.8 303 123-515 2-351 (359)
18 2xpi_A Anaphase-promoting comp 99.9 1.3E-25 4.5E-30 236.0 32.6 338 85-467 200-595 (597)
19 2y4t_A DNAJ homolog subfamily 99.9 2.3E-24 7.8E-29 218.3 37.2 366 80-515 21-436 (450)
20 3ieg_A DNAJ homolog subfamily 99.9 9.3E-24 3.2E-28 206.4 35.6 316 84-468 2-352 (359)
21 4g1t_A Interferon-induced prot 99.9 1.3E-24 4.6E-29 221.5 30.0 340 85-463 51-471 (472)
22 3fp2_A TPR repeat-containing p 99.9 9.8E-24 3.3E-28 218.6 34.3 349 63-454 35-492 (537)
23 3hym_B Cell division cycle pro 99.9 7.7E-23 2.6E-27 197.6 31.1 221 262-515 71-315 (330)
24 3hym_B Cell division cycle pro 99.9 2.2E-22 7.6E-27 194.4 31.1 274 121-467 19-315 (330)
25 1fch_A Peroxisomal targeting s 99.9 4.2E-22 1.4E-26 195.9 23.4 222 240-500 96-358 (368)
26 1fch_A Peroxisomal targeting s 99.9 5.3E-21 1.8E-25 188.0 27.1 291 65-421 37-359 (368)
27 4eqf_A PEX5-related protein; a 99.9 2.8E-21 9.6E-26 190.0 24.0 252 160-497 65-352 (365)
28 4eqf_A PEX5-related protein; a 99.9 5.5E-21 1.9E-25 187.9 23.6 190 240-451 131-354 (365)
29 3cv0_A Peroxisome targeting si 99.9 5.6E-20 1.9E-24 177.2 26.8 225 238-500 51-314 (327)
30 3cv0_A Peroxisome targeting si 99.9 4.5E-20 1.5E-24 177.9 24.6 270 84-453 20-315 (327)
31 3sf4_A G-protein-signaling mod 99.9 3.5E-19 1.2E-23 177.1 29.7 282 123-472 8-363 (406)
32 3sf4_A G-protein-signaling mod 99.9 1.8E-19 6.3E-24 179.2 27.0 280 159-521 8-363 (406)
33 4a1s_A PINS, partner of inscut 99.8 2.7E-19 9.1E-24 178.7 26.9 256 161-502 49-373 (411)
34 3u4t_A TPR repeat-containing p 99.8 1.8E-19 6.2E-24 169.1 23.8 236 241-515 2-266 (272)
35 2h6f_A Protein farnesyltransfe 99.8 1.4E-19 4.8E-24 177.7 23.7 253 238-520 93-369 (382)
36 2pl2_A Hypothetical conserved 99.8 1.8E-19 6.1E-24 163.5 22.2 192 239-452 2-213 (217)
37 3u4t_A TPR repeat-containing p 99.8 2.7E-19 9.3E-24 167.9 23.8 237 160-467 3-266 (272)
38 4a1s_A PINS, partner of inscut 99.8 2.9E-19 1E-23 178.4 24.4 262 125-454 49-373 (411)
39 1klx_A Cysteine rich protein B 99.8 3.7E-20 1.3E-24 154.7 14.5 133 292-431 4-136 (138)
40 2pl2_A Hypothetical conserved 99.8 3.7E-19 1.3E-23 161.4 21.9 190 277-499 3-212 (217)
41 1klx_A Cysteine rich protein B 99.8 8E-20 2.7E-24 152.6 15.3 133 257-396 5-137 (138)
42 3uq3_A Heat shock protein STI1 99.8 2.1E-18 7.3E-23 160.0 26.2 216 242-501 5-236 (258)
43 3uq3_A Heat shock protein STI1 99.8 2.2E-18 7.6E-23 159.9 26.2 218 160-454 5-237 (258)
44 2h6f_A Protein farnesyltransfe 99.8 7.3E-19 2.5E-23 172.6 23.7 241 158-468 95-365 (382)
45 3ro2_A PINS homolog, G-protein 99.8 2.2E-18 7.7E-23 166.2 26.2 256 161-502 6-333 (338)
46 3ro2_A PINS homolog, G-protein 99.8 4.7E-18 1.6E-22 163.9 27.1 261 125-453 6-332 (338)
47 3mkr_A Coatomer subunit epsilo 99.8 6.4E-18 2.2E-22 160.3 23.7 267 105-445 12-286 (291)
48 1xi4_A Clathrin heavy chain; a 99.8 4.5E-16 1.6E-20 167.9 37.4 322 83-502 983-1310(1630)
49 3vtx_A MAMA; tetratricopeptide 99.8 1.5E-17 5E-22 146.4 21.4 170 278-464 4-181 (184)
50 3ulq_A Response regulator aspa 99.8 2.5E-17 8.4E-22 163.0 25.3 220 244-501 105-368 (383)
51 3mkr_A Coatomer subunit epsilo 99.8 7.3E-17 2.5E-21 153.0 27.4 238 141-454 12-265 (291)
52 1xnf_A Lipoprotein NLPI; TPR, 99.8 8.8E-18 3E-22 157.6 20.7 235 141-447 18-269 (275)
53 3vtx_A MAMA; tetratricopeptide 99.8 2.5E-17 8.5E-22 144.9 20.8 170 314-512 4-181 (184)
54 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.7E-17 9.1E-22 154.3 20.1 237 219-495 14-269 (275)
55 3ulq_A Response regulator aspa 99.7 1.4E-16 4.8E-21 157.6 23.5 164 126-348 105-292 (383)
56 4abn_A Tetratricopeptide repea 99.7 1.6E-16 5.6E-21 161.5 23.9 203 262-497 83-317 (474)
57 1xi4_A Clathrin heavy chain; a 99.7 2.6E-15 8.9E-20 162.1 33.7 356 65-516 997-1367(1630)
58 4abn_A Tetratricopeptide repea 99.7 9.9E-17 3.4E-21 163.1 21.6 203 226-450 84-318 (474)
59 3q15_A PSP28, response regulat 99.7 6.6E-16 2.3E-20 152.5 26.5 220 244-501 103-365 (378)
60 2q7f_A YRRB protein; TPR, prot 99.7 1.4E-16 4.7E-21 146.4 19.7 205 241-467 22-238 (243)
61 2q7f_A YRRB protein; TPR, prot 99.7 1.3E-16 4.4E-21 146.6 19.3 205 278-515 22-238 (243)
62 2ho1_A Type 4 fimbrial biogene 99.7 2.3E-15 7.7E-20 139.3 26.1 191 242-454 37-239 (252)
63 2ooe_A Cleavage stimulation fa 99.7 2E-14 6.7E-19 148.6 35.6 367 80-501 8-492 (530)
64 2ho1_A Type 4 fimbrial biogene 99.7 2.2E-15 7.5E-20 139.4 24.2 197 279-508 37-247 (252)
65 3q15_A PSP28, response regulat 99.7 7.2E-16 2.4E-20 152.2 22.1 164 126-348 103-289 (378)
66 2vq2_A PILW, putative fimbrial 99.7 9.5E-15 3.2E-19 132.2 26.8 199 239-459 5-219 (225)
67 4i17_A Hypothetical protein; T 99.7 8.5E-15 2.9E-19 133.4 26.0 200 277-514 5-224 (228)
68 2ooe_A Cleavage stimulation fa 99.7 4.9E-14 1.7E-18 145.6 34.8 338 119-502 8-455 (530)
69 4gyw_A UDP-N-acetylglucosamine 99.7 4.4E-16 1.5E-20 164.7 19.4 161 276-453 6-174 (723)
70 4gyw_A UDP-N-acetylglucosamine 99.7 5.6E-16 1.9E-20 163.9 19.4 159 313-500 7-173 (723)
71 4i17_A Hypothetical protein; T 99.7 8.9E-15 3.1E-19 133.3 25.0 202 238-466 3-224 (228)
72 2vq2_A PILW, putative fimbrial 99.7 1.7E-14 5.9E-19 130.4 26.5 201 277-510 6-222 (225)
73 3nf1_A KLC 1, kinesin light ch 99.7 7.7E-16 2.6E-20 146.9 16.3 237 159-453 26-307 (311)
74 3nf1_A KLC 1, kinesin light ch 99.7 3.7E-16 1.3E-20 149.1 13.6 239 123-423 26-309 (311)
75 1hz4_A MALT regulatory protein 99.6 2.2E-13 7.4E-18 134.0 31.3 261 125-453 15-322 (373)
76 1hz4_A MALT regulatory protein 99.6 1.1E-13 3.7E-18 136.1 27.9 260 161-501 15-322 (373)
77 1qqe_A Vesicular transport pro 99.6 5.9E-15 2E-19 140.1 16.5 210 262-514 32-284 (292)
78 1qqe_A Vesicular transport pro 99.6 1.8E-14 6.2E-19 136.7 17.8 197 225-455 32-271 (292)
79 2ond_A Cleavage stimulation fa 99.6 4.6E-13 1.6E-17 128.0 26.4 211 227-454 33-271 (308)
80 3edt_B KLC 2, kinesin light ch 99.6 2.6E-14 8.7E-19 134.1 17.0 215 221-453 12-281 (283)
81 2ond_A Cleavage stimulation fa 99.6 1E-12 3.6E-17 125.5 28.1 194 266-471 35-256 (308)
82 1b89_A Protein (clathrin heavy 99.6 4.6E-15 1.6E-19 144.4 11.3 284 105-450 16-308 (449)
83 3urz_A Uncharacterized protein 99.6 1.3E-13 4.4E-18 123.7 18.8 161 278-453 3-186 (208)
84 3qky_A Outer membrane assembly 99.6 7.6E-14 2.6E-18 130.0 17.6 150 237-399 10-196 (261)
85 3edt_B KLC 2, kinesin light ch 99.6 6.3E-14 2.1E-18 131.4 17.1 211 258-501 12-281 (283)
86 3urz_A Uncharacterized protein 99.6 1.6E-13 5.4E-18 123.1 18.0 162 241-424 3-189 (208)
87 1b89_A Protein (clathrin heavy 99.5 1.2E-14 4.3E-19 141.4 10.1 298 141-515 16-339 (449)
88 3qky_A Outer membrane assembly 99.5 1E-12 3.5E-17 122.3 22.7 187 314-515 14-243 (261)
89 4ga2_A E3 SUMO-protein ligase 99.5 5.8E-14 2E-18 118.8 11.9 137 320-469 2-147 (150)
90 2pzi_A Probable serine/threoni 99.5 1.3E-13 4.4E-18 146.4 16.9 175 120-364 390-580 (681)
91 2pzi_A Probable serine/threoni 99.5 9.5E-14 3.2E-18 147.4 14.5 176 238-439 390-583 (681)
92 3as5_A MAMA; tetratricopeptide 99.5 1.7E-12 5.8E-17 113.2 19.8 156 280-452 9-172 (186)
93 3as5_A MAMA; tetratricopeptide 99.5 1.3E-12 4.4E-17 114.0 19.0 159 242-422 8-174 (186)
94 2ifu_A Gamma-SNAP; membrane fu 99.5 2E-12 7E-17 123.4 21.4 212 172-445 3-253 (307)
95 4ga2_A E3 SUMO-protein ligase 99.5 8.6E-14 2.9E-18 117.8 9.8 139 284-439 2-149 (150)
96 2ifu_A Gamma-SNAP; membrane fu 99.5 7.1E-13 2.4E-17 126.6 16.1 189 223-454 4-224 (307)
97 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.4E-11 4.9E-16 111.8 19.0 178 241-453 3-213 (225)
98 2yhc_A BAMD, UPF0169 lipoprote 99.4 4.8E-11 1.6E-15 108.3 20.9 176 212-423 6-215 (225)
99 4gco_A Protein STI-1; structur 99.4 1.4E-11 4.8E-16 100.5 14.8 105 389-513 14-124 (126)
100 4gco_A Protein STI-1; structur 99.4 1.4E-11 4.9E-16 100.5 14.6 108 351-466 12-125 (126)
101 2r5s_A Uncharacterized protein 99.4 1.1E-11 3.9E-16 107.7 14.5 159 85-311 6-172 (176)
102 2vsy_A XCC0866; transferase, g 99.4 1.1E-11 3.7E-16 129.1 16.8 155 296-463 2-169 (568)
103 2r5s_A Uncharacterized protein 99.3 1.3E-11 4.5E-16 107.3 12.9 157 280-452 7-172 (176)
104 3qou_A Protein YBBN; thioredox 99.3 3.9E-11 1.3E-15 113.2 17.1 160 276-452 114-283 (287)
105 2qfc_A PLCR protein; TPR, HTH, 99.3 1.6E-10 5.4E-15 109.4 20.8 122 355-500 118-265 (293)
106 2vsy_A XCC0866; transferase, g 99.3 3E-11 1E-15 125.8 17.1 155 260-431 2-169 (568)
107 2qfc_A PLCR protein; TPR, HTH, 99.3 1.2E-10 4.1E-15 110.3 19.2 157 280-453 76-266 (293)
108 3qou_A Protein YBBN; thioredox 99.3 7E-11 2.4E-15 111.5 16.2 162 237-420 112-283 (287)
109 3dra_A Protein farnesyltransfe 99.3 2E-09 6.8E-14 101.4 25.0 218 227-460 50-295 (306)
110 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.7E-10 5.8E-15 103.3 16.5 124 317-454 8-151 (213)
111 3gyz_A Chaperone protein IPGC; 99.2 5E-11 1.7E-15 100.3 11.9 97 350-454 34-134 (151)
112 3u3w_A Transcriptional activat 99.2 3.3E-10 1.1E-14 107.2 19.0 152 285-453 81-266 (293)
113 3u3w_A Transcriptional activat 99.2 1.2E-09 4.2E-14 103.2 22.0 144 333-500 88-265 (293)
114 4gcn_A Protein STI-1; structur 99.2 1.8E-10 6.1E-15 94.1 13.7 106 388-513 8-125 (127)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2E-10 6.7E-15 102.9 15.1 125 353-502 7-151 (213)
116 3dra_A Protein farnesyltransfe 99.2 3.5E-09 1.2E-13 99.7 24.0 212 262-503 48-290 (306)
117 2fo7_A Synthetic consensus TPR 99.2 5.5E-10 1.9E-14 91.2 16.4 107 354-468 3-115 (136)
118 3gyz_A Chaperone protein IPGC; 99.2 1.5E-10 5.1E-15 97.5 12.7 99 158-313 34-134 (151)
119 2fo7_A Synthetic consensus TPR 99.2 8.5E-10 2.9E-14 90.1 17.0 112 334-453 15-132 (136)
120 1p5q_A FKBP52, FK506-binding p 99.2 5.1E-11 1.7E-15 115.1 10.5 135 296-443 126-283 (336)
121 4f3v_A ESX-1 secretion system 99.2 5.3E-10 1.8E-14 102.9 16.2 188 244-455 9-239 (282)
122 4gcn_A Protein STI-1; structur 99.2 3.9E-10 1.3E-14 92.0 13.5 94 352-453 8-112 (127)
123 1a17_A Serine/threonine protei 99.2 1.7E-09 5.8E-14 92.2 18.2 124 352-499 13-144 (166)
124 4f3v_A ESX-1 secretion system 99.2 1E-10 3.4E-15 107.7 10.1 194 141-385 19-237 (282)
125 3gw4_A Uncharacterized protein 99.1 1.7E-09 5.7E-14 95.8 16.8 125 352-500 26-175 (203)
126 2c2l_A CHIP, carboxy terminus 99.1 3.9E-10 1.3E-14 105.9 13.3 188 277-501 2-199 (281)
127 2vgx_A Chaperone SYCD; alterna 99.1 3.3E-10 1.1E-14 95.3 10.7 105 341-453 8-118 (148)
128 1p5q_A FKBP52, FK506-binding p 99.1 1.1E-10 3.8E-15 112.8 8.5 143 261-420 127-293 (336)
129 3gw4_A Uncharacterized protein 99.1 1.6E-09 5.4E-14 95.9 15.4 145 296-453 5-176 (203)
130 3upv_A Heat shock protein STI1 99.1 2.6E-09 8.9E-14 86.8 15.1 107 352-466 4-122 (126)
131 1a17_A Serine/threonine protei 99.1 2.7E-09 9.3E-14 90.9 15.9 126 315-453 13-146 (166)
132 2c2l_A CHIP, carboxy terminus 99.1 5.2E-10 1.8E-14 105.1 12.1 189 83-311 2-198 (281)
133 2vgx_A Chaperone SYCD; alterna 99.1 7E-10 2.4E-14 93.2 11.3 107 149-312 8-118 (148)
134 3upv_A Heat shock protein STI1 99.1 3E-09 1E-13 86.4 13.6 108 388-515 4-123 (126)
135 2lni_A Stress-induced-phosphop 99.0 3.5E-09 1.2E-13 86.4 13.9 110 351-468 15-130 (133)
136 3sz7_A HSC70 cochaperone (SGT) 99.0 3.1E-09 1.1E-13 90.8 13.9 108 351-466 10-123 (164)
137 2xcb_A PCRH, regulatory protei 99.0 1.9E-09 6.5E-14 89.8 11.8 104 342-453 6-115 (142)
138 4b4t_Q 26S proteasome regulato 99.0 6.5E-09 2.2E-13 103.9 17.7 190 242-453 4-245 (434)
139 3sz7_A HSC70 cochaperone (SGT) 99.0 3.5E-09 1.2E-13 90.5 12.6 107 387-513 10-122 (164)
140 2lni_A Stress-induced-phosphop 99.0 9E-09 3.1E-13 83.9 14.5 111 315-438 16-132 (133)
141 2xcb_A PCRH, regulatory protei 99.0 1.7E-09 5.9E-14 90.1 10.2 103 80-193 13-119 (142)
142 4b4t_Q 26S proteasome regulato 99.0 6.7E-09 2.3E-13 103.8 16.5 209 160-421 4-245 (434)
143 3ro3_A PINS homolog, G-protein 99.0 6.8E-09 2.3E-13 87.7 14.1 124 353-500 10-157 (164)
144 3dss_A Geranylgeranyl transfer 99.0 4.1E-07 1.4E-11 86.1 27.6 226 222-456 41-307 (331)
145 2vyi_A SGTA protein; chaperone 99.0 1.7E-08 5.9E-13 81.8 15.9 111 351-469 11-127 (131)
146 2e2e_A Formate-dependent nitri 99.0 2.7E-09 9.3E-14 92.4 11.5 114 333-454 23-145 (177)
147 2hr2_A Hypothetical protein; a 99.0 4.3E-09 1.5E-13 87.7 11.7 95 388-502 11-132 (159)
148 2fbn_A 70 kDa peptidylprolyl i 99.0 1.1E-09 3.8E-14 96.9 8.6 136 296-444 17-176 (198)
149 2fbn_A 70 kDa peptidylprolyl i 99.0 1.3E-08 4.3E-13 90.0 15.0 126 335-468 19-168 (198)
150 3ro3_A PINS homolog, G-protein 99.0 1E-08 3.4E-13 86.6 13.8 124 317-453 11-158 (164)
151 2e2e_A Formate-dependent nitri 98.9 5.3E-09 1.8E-13 90.5 11.7 114 369-502 23-145 (177)
152 1elw_A TPR1-domain of HOP; HOP 98.9 2.6E-08 8.9E-13 79.0 14.9 108 351-466 3-116 (118)
153 1na0_A Designed protein CTPR3; 98.9 3.5E-08 1.2E-12 79.1 15.8 109 352-468 9-123 (125)
154 1elw_A TPR1-domain of HOP; HOP 98.9 2.7E-08 9.1E-13 79.0 14.9 109 387-515 3-117 (118)
155 3mv2_B Coatomer subunit epsilo 98.9 6.5E-08 2.2E-12 90.2 19.3 176 230-428 86-289 (310)
156 2hr2_A Hypothetical protein; a 98.9 1.4E-08 4.7E-13 84.7 13.1 95 352-454 11-132 (159)
157 1hxi_A PEX5, peroxisome target 98.9 1.5E-08 5E-13 81.7 13.0 73 392-468 21-97 (121)
158 2vyi_A SGTA protein; chaperone 98.9 2E-08 6.9E-13 81.3 13.9 112 315-439 12-129 (131)
159 1hxi_A PEX5, peroxisome target 98.9 9.1E-09 3.1E-13 83.0 11.1 93 354-454 19-115 (121)
160 2dba_A Smooth muscle cell asso 98.9 3.9E-08 1.3E-12 81.8 15.4 107 351-465 27-142 (148)
161 1na0_A Designed protein CTPR3; 98.9 4.1E-08 1.4E-12 78.7 15.1 108 388-515 9-122 (125)
162 3rkv_A Putative peptidylprolyl 98.9 2.6E-08 8.9E-13 84.8 14.5 109 352-468 11-144 (162)
163 3q49_B STIP1 homology and U bo 98.9 6.3E-08 2.2E-12 79.5 15.8 97 350-454 7-107 (137)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 1.9E-09 6.5E-14 108.7 7.5 87 352-446 317-407 (457)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 3.4E-08 1.1E-12 99.5 16.6 110 351-468 267-397 (457)
166 1elr_A TPR2A-domain of HOP; HO 98.9 3.5E-08 1.2E-12 80.0 13.7 109 352-468 4-124 (131)
167 1elr_A TPR2A-domain of HOP; HO 98.9 4.3E-08 1.5E-12 79.4 14.2 108 388-515 4-123 (131)
168 1ihg_A Cyclophilin 40; ppiase 98.9 4.5E-08 1.5E-12 95.5 15.9 127 315-468 223-353 (370)
169 3q7a_A Farnesyltransferase alp 98.9 6.2E-07 2.1E-11 85.3 23.0 210 237-458 83-337 (349)
170 3rkv_A Putative peptidylprolyl 98.8 3.6E-08 1.2E-12 83.9 13.0 109 387-515 10-143 (162)
171 2dba_A Smooth muscle cell asso 98.8 1E-07 3.5E-12 79.2 15.4 108 313-433 26-142 (148)
172 2xev_A YBGF; tetratricopeptide 98.8 6.2E-08 2.1E-12 78.6 13.7 93 353-453 3-105 (129)
173 3mv2_B Coatomer subunit epsilo 98.8 7.1E-07 2.4E-11 83.2 22.2 233 220-502 23-283 (310)
174 3q49_B STIP1 homology and U bo 98.8 6.6E-08 2.3E-12 79.4 13.5 110 385-514 6-126 (137)
175 1wao_1 Serine/threonine protei 98.8 2.3E-09 7.9E-14 108.5 5.5 93 369-465 19-117 (477)
176 3dss_A Geranylgeranyl transfer 98.8 6.9E-07 2.4E-11 84.6 21.5 219 262-502 45-305 (331)
177 1dce_A Protein (RAB geranylger 98.8 1.8E-07 6E-12 96.5 18.7 173 335-517 44-239 (567)
178 2kck_A TPR repeat; tetratricop 98.8 3.7E-08 1.3E-12 77.4 10.6 97 350-454 4-107 (112)
179 2if4_A ATFKBP42; FKBP-like, al 98.8 1.5E-08 5.2E-13 97.7 9.8 148 314-502 178-329 (338)
180 3q7a_A Farnesyltransferase alp 98.8 1.2E-06 4.2E-11 83.2 22.6 212 262-501 69-331 (349)
181 2kck_A TPR repeat; tetratricop 98.8 3E-08 1E-12 78.0 8.8 98 81-189 2-106 (112)
182 2xev_A YBGF; tetratricopeptide 98.7 1.3E-07 4.5E-12 76.6 12.8 94 317-423 4-107 (129)
183 1ihg_A Cyclophilin 40; ppiase 98.7 1.2E-07 4E-12 92.6 14.6 136 279-445 223-362 (370)
184 3k9i_A BH0479 protein; putativ 98.7 3.1E-08 1.1E-12 79.2 8.1 81 369-453 3-90 (117)
185 2if4_A ATFKBP42; FKBP-like, al 98.7 2.9E-08 9.8E-13 95.8 9.3 144 280-453 180-328 (338)
186 1wao_1 Serine/threonine protei 98.7 4.8E-09 1.6E-13 106.2 3.4 118 282-416 9-134 (477)
187 1dce_A Protein (RAB geranylger 98.6 6.7E-07 2.3E-11 92.1 17.4 128 336-471 89-241 (567)
188 4e6h_A MRNA 3'-END-processing 98.6 0.00014 4.9E-09 76.0 34.5 370 80-502 61-534 (679)
189 1zu2_A Mitochondrial import re 98.6 9.8E-08 3.4E-12 79.3 8.3 84 335-426 17-125 (158)
190 3k9i_A BH0479 protein; putativ 98.6 1.3E-07 4.6E-12 75.4 8.6 84 333-424 3-93 (117)
191 1zu2_A Mitochondrial import re 98.6 4E-07 1.4E-11 75.6 10.7 93 405-502 15-121 (158)
192 2l6j_A TPR repeat-containing p 98.4 1E-07 3.5E-12 74.9 3.8 78 389-470 5-92 (111)
193 2l6j_A TPR repeat-containing p 98.4 2.2E-06 7.6E-11 67.0 10.9 80 424-520 4-93 (111)
194 2kat_A Uncharacterized protein 98.4 4.5E-06 1.5E-10 66.0 12.7 76 374-453 3-82 (115)
195 1na3_A Designed protein CTPR2; 98.4 3.7E-06 1.3E-10 63.0 11.5 77 388-468 9-89 (91)
196 1na3_A Designed protein CTPR2; 98.4 3.9E-06 1.3E-10 62.9 10.9 78 352-437 9-90 (91)
197 3ma5_A Tetratricopeptide repea 98.4 4.2E-06 1.4E-10 64.4 11.2 80 385-468 4-89 (100)
198 3ma5_A Tetratricopeptide repea 98.3 5.8E-06 2E-10 63.7 11.3 80 238-326 3-88 (100)
199 3n71_A Histone lysine methyltr 98.3 2.1E-05 7.2E-10 79.1 17.7 118 359-500 316-463 (490)
200 2kat_A Uncharacterized protein 98.3 8.1E-06 2.8E-10 64.5 11.8 77 338-422 3-83 (115)
201 3n71_A Histone lysine methyltr 98.3 9.8E-06 3.4E-10 81.5 14.6 112 333-452 322-463 (490)
202 4e6h_A MRNA 3'-END-processing 98.2 0.00017 5.8E-09 75.5 23.6 205 228-453 327-570 (679)
203 2v5f_A Prolyl 4-hydroxylase su 98.1 2.3E-05 7.9E-10 60.8 10.3 73 388-464 5-88 (104)
204 2v5f_A Prolyl 4-hydroxylase su 98.0 5.1E-05 1.7E-09 58.8 10.4 72 424-511 5-87 (104)
205 2uy1_A Cleavage stimulation fa 98.0 0.0076 2.6E-07 60.8 28.5 361 83-499 12-411 (493)
206 3u64_A Protein TP_0956; tetrat 97.9 0.00014 4.7E-09 66.2 11.9 106 349-454 149-270 (301)
207 2kc7_A BFR218_protein; tetratr 97.8 3.8E-05 1.3E-09 58.6 7.2 58 357-422 5-65 (99)
208 3qww_A SET and MYND domain-con 97.8 6E-05 2.1E-09 74.5 10.0 80 405-500 311-410 (433)
209 3u64_A Protein TP_0956; tetrat 97.8 0.00019 6.4E-09 65.4 11.7 103 385-502 149-270 (301)
210 2kc7_A BFR218_protein; tetratr 97.8 0.00013 4.3E-09 55.6 9.2 64 392-459 4-72 (99)
211 3ly7_A Transcriptional activat 97.7 0.00077 2.6E-08 64.0 14.8 66 386-455 275-341 (372)
212 3qww_A SET and MYND domain-con 97.7 0.00018 6.3E-09 71.0 10.5 81 223-312 311-411 (433)
213 3ly7_A Transcriptional activat 97.7 0.0033 1.1E-07 59.7 18.5 137 296-441 212-359 (372)
214 4g26_A Pentatricopeptide repea 97.7 0.0055 1.9E-07 61.9 21.5 151 296-454 39-205 (501)
215 1pc2_A Mitochondria fission pr 97.6 0.00062 2.1E-08 55.8 11.3 81 335-423 13-102 (152)
216 3qwp_A SET and MYND domain-con 97.6 0.0009 3.1E-08 66.1 14.2 80 405-500 300-399 (429)
217 1pc2_A Mitochondria fission pr 97.5 0.00039 1.3E-08 57.0 8.9 88 105-193 11-104 (152)
218 3bee_A Putative YFRE protein; 97.5 0.00018 6.1E-09 54.2 5.9 70 120-190 2-73 (93)
219 3bee_A Putative YFRE protein; 97.5 0.00058 2E-08 51.4 8.6 69 239-313 3-73 (93)
220 3qwp_A SET and MYND domain-con 97.4 0.0014 4.7E-08 64.8 13.0 81 369-453 300-400 (429)
221 4g26_A Pentatricopeptide repea 97.4 0.031 1.1E-06 56.3 22.6 150 333-502 39-205 (501)
222 1nzn_A CGI-135 protein, fissio 95.9 0.068 2.3E-06 42.0 9.9 88 105-193 14-107 (126)
223 1nzn_A CGI-135 protein, fissio 95.9 0.28 9.6E-06 38.5 13.1 81 372-453 17-103 (126)
224 3ffl_A Anaphase-promoting comp 95.8 0.062 2.1E-06 44.3 9.5 98 242-363 63-166 (167)
225 2uy1_A Cleavage stimulation fa 95.8 1.8 6.2E-05 43.3 30.3 339 67-452 28-412 (493)
226 3ffl_A Anaphase-promoting comp 95.1 0.1 3.5E-06 43.0 8.7 115 333-466 33-165 (167)
227 3mkq_B Coatomer subunit alpha; 94.9 1.1 3.8E-05 37.4 14.6 43 141-186 18-60 (177)
228 3mkq_A Coatomer beta'-subunit; 94.9 1.9 6.4E-05 46.0 20.7 69 220-309 639-707 (814)
229 1y8m_A FIS1; mitochondria, unk 93.5 0.46 1.6E-05 38.0 8.8 45 409-453 59-106 (144)
230 3mkq_B Coatomer subunit alpha; 93.0 3.5 0.00012 34.4 15.5 109 240-381 6-114 (177)
231 4h7y_A Dual specificity protei 92.8 1.4 4.9E-05 35.5 10.7 102 346-454 7-124 (161)
232 3o48_A Mitochondria fission 1 92.8 0.74 2.5E-05 36.3 8.9 45 409-453 60-107 (134)
233 3o48_A Mitochondria fission 1 92.8 0.86 2.9E-05 35.9 9.3 86 335-425 22-111 (134)
234 3mkq_A Coatomer beta'-subunit; 92.6 12 0.00041 39.6 23.7 149 261-450 613-762 (814)
235 4h7y_A Dual specificity protei 91.8 1.8 6.1E-05 35.0 10.1 102 382-502 7-124 (161)
236 1y8m_A FIS1; mitochondria, unk 91.3 4.3 0.00015 32.4 11.8 74 240-319 37-115 (144)
237 3txn_A 26S proteasome regulato 91.3 11 0.00036 36.2 18.2 89 283-384 103-209 (394)
238 1ya0_A SMG-7 transcript varian 91.0 1.3 4.4E-05 44.1 10.7 57 356-420 156-214 (497)
239 4ady_A RPN2, 26S proteasome re 88.1 31 0.0011 37.0 26.9 348 87-520 337-723 (963)
240 3txn_A 26S proteasome regulato 88.1 19 0.00065 34.5 17.2 156 281-452 21-209 (394)
241 1ya0_A SMG-7 transcript varian 86.4 3.5 0.00012 41.0 10.2 75 244-327 154-232 (497)
242 2wpv_A GET4, UPF0363 protein Y 84.4 25 0.00086 32.3 15.5 27 313-344 132-158 (312)
243 2wpv_A GET4, UPF0363 protein Y 83.7 27 0.00092 32.1 17.9 63 241-307 91-158 (312)
244 4ady_A RPN2, 26S proteasome re 80.7 66 0.0023 34.6 26.9 32 141-172 243-274 (963)
245 1wy6_A Hypothetical protein ST 77.9 22 0.00074 28.2 9.4 57 262-322 106-164 (172)
246 1wy6_A Hypothetical protein ST 77.6 19 0.00064 28.6 8.9 59 405-463 104-164 (172)
247 4gns_B Protein CSD3, chitin bi 76.8 25 0.00084 36.9 12.6 46 405-450 350-397 (754)
248 2ff4_A Probable regulatory pro 75.5 24 0.0008 33.8 11.5 59 390-452 173-233 (388)
249 3kae_A CDC27, possible protein 72.1 40 0.0014 27.8 12.0 89 282-386 36-144 (242)
250 3spa_A Mtrpol, DNA-directed RN 69.0 43 0.0015 36.4 12.2 92 355-454 130-231 (1134)
251 3spa_A Mtrpol, DNA-directed RN 68.4 45 0.0015 36.3 12.2 97 390-506 129-236 (1134)
252 2w2u_A Hypothetical P60 katani 67.0 11 0.00038 26.9 5.2 33 408-453 16-48 (83)
253 3kae_A CDC27, possible protein 65.3 57 0.0019 26.9 12.7 27 427-453 117-143 (242)
254 2v6y_A AAA family ATPase, P60 65.1 13 0.00043 26.6 5.2 33 408-453 8-40 (83)
255 4gns_B Protein CSD3, chitin bi 64.4 57 0.0019 34.2 12.0 46 333-382 350-397 (754)
256 4b4t_R RPN7, 26S proteasome re 64.0 14 0.00047 36.0 7.1 93 352-452 131-236 (429)
257 2w2u_A Hypothetical P60 katani 63.3 7.1 0.00024 27.9 3.6 14 440-453 16-29 (83)
258 2v6y_A AAA family ATPase, P60 61.6 7.9 0.00027 27.6 3.6 13 441-453 9-21 (83)
259 4b4t_R RPN7, 26S proteasome re 58.8 28 0.00097 33.7 8.3 93 279-384 131-236 (429)
260 1wfd_A Hypothetical protein 15 55.7 24 0.00081 25.8 5.4 36 405-453 9-44 (93)
261 3lpz_A GET4 (YOR164C homolog); 53.3 1.4E+02 0.0048 27.6 26.3 245 225-521 11-298 (336)
262 1qsa_A Protein (soluble lytic 51.6 2.1E+02 0.0072 29.1 26.5 117 369-502 227-349 (618)
263 4b4t_P 26S proteasome regulato 50.4 1.4E+02 0.0049 28.8 11.8 59 426-500 179-246 (445)
264 4b4t_P 26S proteasome regulato 49.4 1.3E+02 0.0044 29.2 11.3 91 354-452 139-246 (445)
265 1wfd_A Hypothetical protein 15 48.3 17 0.00058 26.5 3.6 14 440-453 12-25 (93)
266 2v6x_A Vacuolar protein sortin 45.6 40 0.0014 23.9 5.2 34 407-453 9-42 (85)
267 3lpz_A GET4 (YOR164C homolog); 44.5 1.9E+02 0.0067 26.7 24.2 40 264-307 119-160 (336)
268 2cpt_A SKD1 protein, vacuolar 44.1 35 0.0012 26.1 4.9 33 408-453 15-47 (117)
269 4a5x_A MITD1, MIT domain-conta 44.0 34 0.0012 24.5 4.5 34 407-453 12-45 (86)
270 2cpt_A SKD1 protein, vacuolar 43.4 22 0.00076 27.2 3.7 14 440-453 15-28 (117)
271 2v6x_A Vacuolar protein sortin 42.6 24 0.00082 25.2 3.6 14 440-453 10-23 (85)
272 2crb_A Nuclear receptor bindin 41.5 45 0.0015 24.1 4.6 27 426-452 17-43 (97)
273 4a5x_A MITD1, MIT domain-conta 40.8 23 0.0008 25.4 3.2 13 441-453 14-26 (86)
274 2ff4_A Probable regulatory pro 40.5 1E+02 0.0034 29.3 8.8 59 130-192 177-237 (388)
275 2rpa_A Katanin P60 ATPase-cont 38.1 26 0.00088 24.6 3.0 27 427-453 15-41 (78)
276 2dl1_A Spartin; SPG20, MIT, st 36.5 35 0.0012 25.9 3.7 16 438-453 17-32 (116)
277 4fhn_B Nucleoporin NUP120; pro 28.5 80 0.0027 35.1 6.6 64 121-188 839-927 (1139)
278 1zbp_A Hypothetical protein VP 27.6 1.4E+02 0.0049 26.5 6.8 50 405-454 10-61 (273)
279 3re2_A Predicted protein; meni 27.5 2E+02 0.0069 26.8 7.7 65 240-311 253-324 (472)
280 4fhn_B Nucleoporin NUP120; pro 26.6 1.2E+02 0.0041 33.7 7.6 92 350-449 840-963 (1139)
281 3eab_A Spastin; spastin, MIT, 25.9 30 0.001 24.9 1.6 15 439-453 12-26 (89)
282 3re2_A Predicted protein; meni 25.8 1.5E+02 0.0051 27.6 6.6 64 314-384 254-324 (472)
283 2uwj_G Type III export protein 25.1 2.1E+02 0.0072 21.2 9.0 52 333-391 52-103 (115)
284 2dl1_A Spartin; SPG20, MIT, st 25.0 67 0.0023 24.4 3.5 15 438-452 36-50 (116)
285 3ltm_A Alpha-REP4; protein eng 24.7 2.9E+02 0.01 22.7 14.7 149 301-466 50-198 (211)
286 2p58_C Putative type III secre 24.5 2.2E+02 0.0074 21.1 8.7 52 333-391 53-104 (116)
287 4b4t_S RPN3, 26S proteasome re 23.9 68 0.0023 31.8 4.3 57 215-276 236-299 (523)
288 3u84_A Menin; MLL, JUND, ledgf 23.1 2.5E+02 0.0087 26.7 7.6 65 240-311 275-346 (550)
289 3o10_A Sacsin; all-helical dom 22.7 1.6E+02 0.0053 23.2 5.6 47 140-192 2-48 (141)
290 3o10_A Sacsin; all-helical dom 22.1 1.3E+02 0.0044 23.7 5.0 44 368-421 2-45 (141)
291 2crb_A Nuclear receptor bindin 20.1 1.5E+02 0.005 21.4 4.2 28 162-189 17-44 (97)
No 1
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=1.2e-47 Score=394.41 Aligned_cols=384 Identities=25% Similarity=0.355 Sum_probs=249.1
Q ss_pred CccccCCCCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHH
Q 009801 73 SPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHH 152 (525)
Q Consensus 73 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~ 152 (525)
...++++++.+++++++.+|..+.. ..+..+++++|+.+|+++++.+++.+++.||.+|..|.|+++|+++|++||+
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~---g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQ---GNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHc---CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4456667788999999999998876 3455788999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHH
Q 009801 153 FAAEGGNIQSKMAVAYTYLR----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDE 228 (525)
Q Consensus 153 ~a~~~~~~~a~~~la~~y~~----~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (525)
++++.+++.+++.||.+|.. .+++++|+.+|+++++
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------------------------------------- 143 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE---------------------------------------- 143 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----------------------------------------
Confidence 99999999999999999988 6777777777777643
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 229 AFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 229 A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
.+++.+++.||.+|..+ .++++|+++|+.||+++++.+++.+++.||.+|..|.++.+++++|+.+|++
T Consensus 144 ----------~~~~~a~~~Lg~~y~~g-~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 144 ----------QGRDSGQQSMGDAYFEG-DGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp ----------TTCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 44555555555555554 2445555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCH
Q 009801 309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ 388 (525)
Q Consensus 309 a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~ 388 (525)
+++.+++.+++.+|.+|..|.++.. ++++|+.+|+++++.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++
T Consensus 213 a~~~~~~~a~~~lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 213 SATSGDELGQLHLADMYYFGIGVTQ-DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 5555555555555555555544433 555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTG-VGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG---DVGKAFLLYSRMAELGYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g-~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~a~~~la~ 464 (525)
.+++.||.+|..+ .++.+++++|+.||+++++.+++.+++++|.++...| ++++|+.+|+++++.+++.+++++|.
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 371 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGN 371 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555555554 4444555555555555555555555555555555544 55555555555555555555555555
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHcccccCCC
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRVRHSE 523 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~ 523 (525)
+|.. |.. ..+++++|+.||++|++.++++++++||.+|+.|.||.+|
T Consensus 372 ~y~~-----------g~g-~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 372 ALLQ-----------GKG-VKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp HHHH-----------TSS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHc-----------CCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 5543 000 1335555555555555555555555555555555555443
No 2
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=7.1e-44 Score=366.39 Aligned_cols=352 Identities=27% Similarity=0.425 Sum_probs=329.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc----cccHHHHHHH
Q 009801 107 VMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR----QDMHDKAVKL 182 (525)
Q Consensus 107 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~----~~~~~~A~~~ 182 (525)
....++..++++++.+++++++.||.+|..|.++.+|+++|+.+|+++++.+++.+++.||.+|.. .+++++|+.+
T Consensus 22 ~~~~~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 22 LGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp ---CCHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 345568889999999999999999999999999999999999999999999999999999999988 6777776666
Q ss_pred HHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccC
Q 009801 183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRD 262 (525)
Q Consensus 183 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~ 262 (525)
|+++ ++.+++.+++.||.+|..+ .++++|
T Consensus 102 ~~~a--------------------------------------------------~~~~~~~a~~~Lg~~y~~g-~g~~~~ 130 (490)
T 2xm6_A 102 YKKA--------------------------------------------------ALKGLPQAQQNLGVMYHEG-NGVKVD 130 (490)
T ss_dssp HHHH--------------------------------------------------HHTTCHHHHHHHHHHHHHT-SSSCCC
T ss_pred HHHH--------------------------------------------------HHCCCHHHHHHHHHHHHcC-CCCCCC
Confidence 6654 5668899999999999987 478899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 009801 263 RTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (525)
Q Consensus 263 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~ 342 (525)
+++|+.||+++++.+++.+++.||.+|..|.++.+|+++|+.+|+++++.+++.+++.||.+|..|.++.. ++++|+.+
T Consensus 131 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~ 209 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVER-NDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCc-CHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888766 99999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 343 FEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 343 ~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
|+++++.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++.+++++|.+|..|.++.+++++|+.||+++++.+
T Consensus 210 ~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 210 YRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHH
Q 009801 423 PWSSLSRWALESYLK-----GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQ 497 (525)
Q Consensus 423 ~~~a~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 497 (525)
++.+++.+|.++... +++++|+.+|+++++.+++.+++++|.+|...| ..+++++|+.||++
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g-------------~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG-------------SEEEHKKAVEWFRK 356 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CcccHHHHHHHHHH
Confidence 999999999999988 899999999999999999999999999998721 26799999999999
Q ss_pred HHhCCCHHHHHHHHHHHHcccccCCC
Q 009801 498 ASEQGNEHAALLIGDAYYYGRVRHSE 523 (525)
Q Consensus 498 a~~~~~~~a~~~lg~~y~~g~g~~~~ 523 (525)
|++.+++++++.||.+|+.|.||.+|
T Consensus 357 a~~~~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 357 AAAKGEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999875
No 3
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=100.00 E-value=5.2e-40 Score=332.99 Aligned_cols=381 Identities=14% Similarity=-0.001 Sum_probs=289.5
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009801 89 YYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168 (525)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~ 168 (525)
..+|..++. .+++++|+.+|+++++++++++++.||.+|.. .|...|.++|+.||++|++. ++.+++.||.
T Consensus 7 ~~la~~~~~-------~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~-~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~ 77 (452)
T 3e4b_A 7 QRLANEALK-------RGDTVTAQQNYQQLAELGYSEAQVGLADIQVG-TRDPAQIKQAEATYRAAADT-SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHTCCTGGGTCC------------------------------CHHHHHH
T ss_pred HHHHHHHHh-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHhC-CHHHHHHHHH
Confidence 456777776 88999999999999999999999999999965 55556669999999999988 8999999999
Q ss_pred HHhcc-----ccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCC---cHHHHHHHHHHHHcC
Q 009801 169 TYLRQ-----DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGE---DDEAFQILEYQAQKG 240 (525)
Q Consensus 169 ~y~~~-----~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~ 240 (525)
++... +++++|+.+|+++++.+.. ....+++.++...+. -.+++++++++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~------------------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g 139 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEG------------------NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG 139 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCS------------------SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCH------------------HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC
Confidence 55443 4889999999998874322 234456666554332 256788888888889
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHH--
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAY-- 318 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~-- 318 (525)
++.+++.||.+|..++ +..++.++|..+++.+ ..+++.+++.||.+|.. .|+..++++|+.+|+++++.++..+.
T Consensus 140 ~~~a~~~Lg~~y~~~~-~~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQG-TYDQHLDDVERICKAA-LNTTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHT-CGGGGHHHHHHHHHHH-TTTCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CcccCHHHHHHHHHHH-HcCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999884 6667777766655544 45667799999999998 33333999999999999999876666
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009801 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMF 398 (525)
Q Consensus 319 ~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y 398 (525)
++||.+|..|.++.+ ++++|+.+|++++ .+++.++++||.+|..+.+ .+++++|+.+|+++++.+++.++++||.+|
T Consensus 217 ~~Lg~~y~~g~~~~~-d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 217 DSVARVLGDATLGTP-DEKTAQALLEKIA-PGYPASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAADQPRAELLLGKLY 293 (452)
T ss_dssp HHHHHHHTCGGGSSC-CHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCC-CHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999988777665 9999999999999 8999999999999664444 889999999999999999999999999999
Q ss_pred HcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCcc
Q 009801 399 HTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL----KGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSM 474 (525)
Q Consensus 399 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~ 474 (525)
..|.|+.+|+++|+.||++|+ .+++.++++||.+|.. ..|+++|+.||++|++.|++.++++||.+|..
T Consensus 294 ~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~------ 366 (452)
T 3e4b_A 294 YEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQ------ 366 (452)
T ss_dssp HHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHS------
T ss_pred HcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHh------
Confidence 999999999999999999999 8889999999987766 34999999999999999999999999999875
Q ss_pred ccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009801 475 CMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYY 515 (525)
Q Consensus 475 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 515 (525)
|... ..|+.+|+.||++|++.|++++...|+.+..
T Consensus 367 -----G~g~-~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~ 401 (452)
T 3e4b_A 367 -----GKGT-KPDPLNAYVFSQLAKAQDTPEANDLATQLEA 401 (452)
T ss_dssp -----CTTB-CCCHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred -----CCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2221 4678899999999999999999998888754
No 4
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=100.00 E-value=4.6e-41 Score=340.74 Aligned_cols=390 Identities=15% Similarity=0.087 Sum_probs=307.6
Q ss_pred CCCCCCCccccCCCCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHH-hhhcCCCccCCHH
Q 009801 67 LDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGF-LYGMGMMRERNKG 145 (525)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~-~y~~g~g~~~d~~ 145 (525)
+++..|+.+|+++++++++++++.+|.++.. .+...|+++|+.+|+++++. ++.+++.||. ++..|.++++|++
T Consensus 17 g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~----~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGYSEAQVGLADIQVG----TRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc----cCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 5667888888888888999999999998864 34455669999999998887 9999999999 5666556668999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhccccHH---HHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhc
Q 009801 146 KAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHD---KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS 222 (525)
Q Consensus 146 ~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~---~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (525)
+|+.||++|++.|++.+++.||.+|...+..+ +++.++.++.+.+. ......++.++..
T Consensus 92 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~------------------~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 92 EAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY------------------PEAGLAQVLLYRT 153 (452)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC------------------TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC------------------HHHHHHHHHHHHc
Confidence 99999999999999999999999998876544 44555555543321 1235567778877
Q ss_pred cCCcHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHH--HHHHHHHHcCCCCCC
Q 009801 223 RGEDDEAFQI---LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSM--EFLGEIYARGAGVER 297 (525)
Q Consensus 223 ~~~~~~A~~~---~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~--~~Lg~~y~~g~~~~~ 297 (525)
.+.+++++.. +.+.+..+++.+++.||.+|... ++++++++|+.||+++++.+++.+. ++||.+|..|.++.+
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~--g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKK--QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 7766666555 44556678889999999999986 5666999999999999999887777 999999999988899
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 298 NYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACK 377 (525)
Q Consensus 298 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~ 377 (525)
|+++|+.+|++++ .+++.++++||.+|..|.+ .+++++|+.+|+++++.+++.++++||.+|..|.++.+|+++|+.
T Consensus 232 d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~--~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PGYPASWVSLAQLLYDFPE--LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEA 308 (452)
T ss_dssp CHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGG--GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999999999 9999999999999764443 569999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 009801 378 YFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL----KGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 378 ~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~a~~~ 453 (525)
||++++ .+++.++++||.+|..|.|+.+|+++|+.||+++++.+++.++++||.+|.. ..|+.+|+.||++|++.
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 999999 9999999999999999999999999999999999999999999999998774 45999999999999999
Q ss_pred ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 454 ~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
|++.+...++.+.... +..+..+|....++-.
T Consensus 388 g~~~a~~~l~~l~~~~--------------~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 388 DTPEANDLATQLEAPL--------------TPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCHHHHHHHHHHHTTC--------------CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--------------CHHHHHHHHHHHHHHH
Confidence 9999999999987541 2667778877777543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.4e-32 Score=268.71 Aligned_cols=361 Identities=17% Similarity=0.150 Sum_probs=324.4
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHH
Q 009801 90 YITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMA 165 (525)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~ 165 (525)
.+|..++. .+++++|+..++++ .+|+++.++..+|.++.. .+++++|..++++++. +.+..+++.
T Consensus 4 ~~a~~~~~-------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~a~~~~p~~~~~~~~ 72 (388)
T 1w3b_A 4 ELAHREYQ-------AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQNPLLAEAYSN 72 (388)
T ss_dssp THHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 45666666 88899999999995 478899999999999998 8999999999999876 468899999
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHH
Q 009801 166 VAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAG 243 (525)
Q Consensus 166 la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 243 (525)
+|.+|...|++++|+..|+++++..|... .....++.++...|++++|++.++++.. |+++.
T Consensus 73 lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (388)
T 1w3b_A 73 LGNVYKERGQLQEAIEHYRHALRLKPDFI----------------DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCcchH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999988755432 2356788999999999999999999855 57889
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHH
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYN 319 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 319 (525)
++..+|.++... +++++|+.+|+++++. +++.++..+|.++.. .+++++|+.+|+++++.+ ++.++.
T Consensus 137 ~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T 1w3b_A 137 VRSDLGNLLKAL-----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp HHHHHHHHHHTT-----SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999887 4999999999999875 678999999999999 999999999999998764 789999
Q ss_pred HHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 009801 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLA 395 (525)
Q Consensus 320 ~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~ 395 (525)
.+|.++.. .+++++|+..|+++++. +++.++..+|.+|.. .+++++|+..|+++++. .++.++..+|
T Consensus 208 ~lg~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 278 (388)
T 1w3b_A 208 NLGNVLKE-----ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIELQPHFPDAYCNLA 278 (388)
T ss_dssp HHHHHHHT-----TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHH-----cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 99999986 56999999999999876 578899999999999 99999999999999987 5789999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCC
Q 009801 396 KMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGE 471 (525)
Q Consensus 396 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~ 471 (525)
.++.. .+++++|+.+|+++++..| ..++..+|.++...|++++|+.+++++++. +++.+++++|.++..
T Consensus 279 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--- 351 (388)
T 1w3b_A 279 NALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ--- 351 (388)
T ss_dssp HHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT---
T ss_pred HHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---
Confidence 99998 9999999999999999874 678889999999999999999999999986 578899999999988
Q ss_pred CccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 472 GSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.+++++|+.+|+++++.. ++++++++|.+|.
T Consensus 352 -------------~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 352 -------------QGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp -------------TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred -------------cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 668899999999999865 7999999999986
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.1e-31 Score=264.95 Aligned_cols=355 Identities=17% Similarity=0.123 Sum_probs=317.0
Q ss_pred cCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCcc
Q 009801 66 NLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 66 ~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~ 141 (525)
.++++.|...++++ .+|+++.+...++.++.. .+++++|..+++++. +|.++.+++.+|.+|.. .
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~----~ 80 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ-------CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE----R 80 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----C
Confidence 35666777777766 678888899999998887 788999999999964 67889999999999999 9
Q ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 142 RNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
+++++|+..|++++. +++..++..+|.++...|++++|+..|+++++..|... .....++.+
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~ 144 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY----------------CVRSDLGNL 144 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT----------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHH
Confidence 999999999999975 57899999999999999999999999999988755432 235578889
Q ss_pred hhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGV 295 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~ 295 (525)
+...|++++|++.|+++.. |+++.++..+|.++... +++++|+.+|+++++. +++.++..+|.++..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 215 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-----GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE---- 215 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----
Confidence 9999999999999999865 57899999999999888 4999999999999875 678999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~ 371 (525)
.+++++|+..|++++... ++.++..+|.++.. .+++++|+.+|+++++. +++.++..+|.++.. .++
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~ 286 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-----QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGS 286 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSC
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Confidence 999999999999998764 78999999999987 67999999999999976 578899999999999 999
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHH
Q 009801 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 372 ~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
+++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..| ..++..+|.++...|++++|+.+|
T Consensus 287 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 287 VAEAEDCYNTALRLCPTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999987 678999999999998 9999999999999999865 678899999999999999999999
Q ss_pred HHHHHc--ChHHHHHHHHHHHhhh
Q 009801 448 SRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 448 ~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
+++++. .++.+++++|.++...
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHc
Confidence 999976 5789999999988763
No 7
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=100.00 E-value=2e-30 Score=244.95 Aligned_cols=256 Identities=26% Similarity=0.356 Sum_probs=138.5
Q ss_pred hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHhhhh
Q 009801 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR----QDMHDKAVKLYAELAEIAVNSFL 195 (525)
Q Consensus 120 ~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~----~~~~~~A~~~y~~~~~~~~~~~~ 195 (525)
+++++.+++.+|.+|.. .+++++|+.+|+++++.+++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 2 ~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a--------- 68 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA--------- 68 (273)
T ss_dssp ---CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------
T ss_pred CCCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH---------
Confidence 34555555555555555 45555555555555555555555555555554 44444444444433
Q ss_pred ccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh
Q 009801 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (525)
++.+++.+++.||.+|..+ .++.+++++|+.+|+++++
T Consensus 69 -----------------------------------------~~~~~~~a~~~lg~~~~~g-~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 69 -----------------------------------------CDLNYSNGCHLLGNLYYSG-QGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp -----------------------------------------HHTTCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHH
T ss_pred -----------------------------------------HHCCCHHHHHHHHHHHhCC-CCcccCHHHHHHHHHHHHH
Confidence 2223455555555555553 2334455555555555555
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHH
Q 009801 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355 (525)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~ 355 (525)
.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++.+++.+|.+|..|.+... ++++|+.+|+++++.+++.++
T Consensus 107 ~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~a~ 185 (273)
T 1ouv_A 107 LKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLKDSPGC 185 (273)
T ss_dssp TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 5555555555555555555555555555555555555555555555555555443322 555555555555555555555
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWA 431 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 431 (525)
+.+|.+|..|.++.+++++|+.+|+++++.+++.+++++|.+|..|.++.+++++|+.+|+++++.++..+...+.
T Consensus 186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 186 FNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555554444
No 8
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=100.00 E-value=1.9e-30 Score=245.05 Aligned_cols=260 Identities=25% Similarity=0.289 Sum_probs=235.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSA 317 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a 317 (525)
+++++.+++.+|.+|...+ ++++|+.+|+++++.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~-----~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEK-----DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCChHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHH
Confidence 5688999999999998884 99999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~ 397 (525)
++.+|.+|..|.++.. ++++|+.+|+++++.+++.+++.+|.+|..|.++.+++++|+.+|+++++.+++.+++++|.+
T Consensus 77 ~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 155 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQ-NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccc-CHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999998877655 999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCc
Q 009801 398 FHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL----KGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGS 473 (525)
Q Consensus 398 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~ 473 (525)
|..|.+..+++++|+.+|+++++.+++.+++.+|.++.. .+++++|+.+|+++++.+++.+++++|.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~----- 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN----- 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc-----
Confidence 999888899999999999999999999999999999999 99999999999999999999999999999975
Q ss_pred cccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009801 474 MCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYY 515 (525)
Q Consensus 474 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 515 (525)
+.. ..+++++|+.+|++|++.++.++...|+.+..
T Consensus 231 ------g~~-~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 265 (273)
T 1ouv_A 231 ------GEG-VTRNEKQAIENFKKGCKLGAKGACDILKQLKI 265 (273)
T ss_dssp ------TSS-SSCCSTTHHHHHHHHHHHTCHHHHHHHHTCCC
T ss_pred ------CCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 15578899999999999999999998887654
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.2e-28 Score=248.13 Aligned_cols=381 Identities=17% Similarity=0.045 Sum_probs=316.2
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh-cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCH
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM-EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI 160 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~ 160 (525)
++++++.+|..++. .+++++|+..|+++.+ ..++.+++.+|.+|.. .+++++|+.+|+++++ +++.
T Consensus 5 ~a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 73 (514)
T 2gw1_A 5 YALALKDKGNQFFR-------NKKYDDAIKYYNWALELKEDPVFYSNLSACYVS----VGDLKKVVEMSTKALELKPDYS 73 (514)
T ss_dssp HHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSCCH
T ss_pred hHHHHHHHHHHHHH-------hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHH----HhhHHHHHHHHHHHhccChHHH
Confidence 35678889998887 8899999999999753 2478999999999998 9999999999999976 5789
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc-------------------------------------------
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS------------------------------------------- 197 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~------------------------------------------- 197 (525)
.+++.+|.+|...|++++|+..|++++...+......
T Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
T 2gw1_A 74 KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD 153 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh
Confidence 9999999999999999999999999877643210000
Q ss_pred CCCCCchhh--------------------hhcccchhhhhHhhhc---cCCcHHHHHHHHHHHH----------------
Q 009801 198 KDSPVIEPI--------------------RIHNGAEENKGALRKS---RGEDDEAFQILEYQAQ---------------- 238 (525)
Q Consensus 198 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~---------------- 238 (525)
......... ..........+..... .|++++|+..++++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (514)
T 2gw1_A 154 KQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233 (514)
T ss_dssp ---CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH
T ss_pred hccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC
Confidence 000000000 0001112334443443 8999999999999987
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CH
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LY 315 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~ 315 (525)
+.++.+++.+|.++...+ ++++|+.+|+++++.+. +.++..+|.+|.. .+++++|+.+|+++++.. ++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 304 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKN-----DPLGAHEDIKKAIELFPRVNSYIYMALIMAD----RNDSTEYYNYFDKALKLDSNNS 304 (514)
T ss_dssp HHHHHHHHHHHHHHHHSS-----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SSCCTTGGGHHHHHHTTCTTCT
T ss_pred hHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhhCccHHHHHHHHHHHHH----CCCHHHHHHHHHHHhhcCcCCH
Confidence 567889999999999884 99999999999987522 8899999999999 999999999999999864 78
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~ 391 (525)
.++..+|.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++. +++.++
T Consensus 305 ~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 375 (514)
T 2gw1_A 305 SVYYHRGQMNFI-----LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR----ENKFDDCETLFSEAKRKFPEAPEVP 375 (514)
T ss_dssp HHHHHHHHHHHH-----TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT----TTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred HHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcccCHHHH
Confidence 899999999987 56999999999999876 578899999999999 99999999999999887 578899
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc--ChHHH
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--------WSSLSRWALESYL---KGDVGKAFLLYSRMAEL--GYEVA 458 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------~~a~~~l~~~~~~---~g~~~~A~~~~~~a~~~--~~~~a 458 (525)
..+|.++.. .+++++|+.+++++++..+ ..++..+|.++.. .|++++|+.+++++++. +++.+
T Consensus 376 ~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 376 NFFAEILTD----KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 999999998 9999999999999998753 2289999999999 99999999999999876 57889
Q ss_pred HHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 009801 459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDA 513 (525)
Q Consensus 459 ~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 513 (525)
+..+|.++.. .+++++|+.+|+++++.. +++++..+...
T Consensus 452 ~~~la~~~~~----------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 452 KIGLAQMKLQ----------------QEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------hcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999998 778999999999999865 56666555443
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=5.1e-27 Score=246.78 Aligned_cols=399 Identities=10% Similarity=-0.015 Sum_probs=320.7
Q ss_pred CCCCCCCccccCCC--CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH-hcCChHHHHHHHHhhhcCCCccCC
Q 009801 67 LDPGSWSPVFEPSI--DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-MEGDPHARSVLGFLYGMGMMRERN 143 (525)
Q Consensus 67 ~~~~~a~~~~~~~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~y~~g~g~~~d 143 (525)
+++..|..+|++.. .| ++.+.+.++..+.. .+++++|+..++++. .+.++.+++.+|.+|.. .++
T Consensus 98 g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 165 (597)
T 2xpi_A 98 QQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCC-------TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK----LYD 165 (597)
T ss_dssp TCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHH-------TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH----TTC
T ss_pred cCchHHHHHHHHHHhhCC-CchHHHHHHHHHHH-------cCcHHHHHHHHHHHhccccchhHHHHHHHHHHH----Hhh
Confidence 55666777776662 33 33566777777776 778899999998863 46788899999999988 889
Q ss_pred HHHHHHHHHHHHcCC------------------CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC-------
Q 009801 144 KGKAFLYHHFAAEGG------------------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK------- 198 (525)
Q Consensus 144 ~~~A~~~~~~a~~~~------------------~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~------- 198 (525)
+++|++.|++..... +..+++.+|.+|...|++++|+..|+++++.++.......
T Consensus 166 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhc
Confidence 999999998643322 4788999999999999999999999999887654321100
Q ss_pred ---------------------------------CCCCch------h---------hhhcccchhhhhHhhhccCCcHHHH
Q 009801 199 ---------------------------------DSPVIE------P---------IRIHNGAEENKGALRKSRGEDDEAF 230 (525)
Q Consensus 199 ---------------------------------~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~~A~ 230 (525)
...... . ..........++.++...|++++|+
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 000000 0 0011223445666677778888888
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 009801 231 QILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWL 306 (525)
Q Consensus 231 ~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~ 306 (525)
+.|+++.. +.+..++..++.++...+ ++++|+..++++++. +++.++..+|.+|.. .+++++|+.+|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 396 (597)
T 2xpi_A 326 AITTKILEIDPYNLDVYPLHLASLHESG-----EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC----VNKISEARRYF 396 (597)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHHT-----CHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----hccHHHHHHHH
Confidence 88887754 356677777777777663 788888888877654 567899999999999 99999999999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 307 THAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 307 ~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
+++++.. +..++..++.+|.. .|++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAI-----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 9998753 78899999999987 67999999999999876 578899999999999 99999999999999
Q ss_pred HHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc------CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 383 ANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER------GP---WSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 383 ~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~------~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
++. .++.++..++.+|.. .+++++|+.+|+++++. .+ ..++..+|.++...|++++|+.++++++
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFN----KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 876 678999999999998 99999999999999887 33 4688899999999999999999999998
Q ss_pred Hc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 452 EL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 452 ~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
+. .++.++..++.+|.. .+++++|+.+|+++++.. ++.++..|+.+|.
T Consensus 544 ~~~p~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLH----------------KKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HhCCCChHHHHHHHHHHHH----------------hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 76 478999999999998 778999999999998865 8999999999885
No 11
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.96 E-value=1.5e-27 Score=215.96 Aligned_cols=199 Identities=21% Similarity=0.238 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 009801 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWL 306 (525)
Q Consensus 227 ~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~ 306 (525)
.+|+++|+++++.+++.+++.||.+|... +|+++|+.||+++++.+++.++++||.+|.. .++..|+++|+.+|
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~-----~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSS-----GDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 35788899999999999999999999876 4999999999999999999999999999988 47777999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 307 THAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 307 ~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
+++++.+++.++++||.+|..|.++.. |+++|+.+|+++++.++ +.++++||.+|..|.++.+++++|+.||+++
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGAT-DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSC-CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999988877766 99999999999999988 8899999999999988899999999999999
Q ss_pred HHc-CCHHHHHHHHHHHHcCCC--CcCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009801 383 ANA-GHQKAFYQLAKMFHTGVG--LKKNLHMATALYKLVAERGPWSSLSRWAL 432 (525)
Q Consensus 383 ~~~-~~~~a~~~l~~~y~~g~g--~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 432 (525)
++. +++.++++||.+|..|.+ +.+|+++|+.||++|++.++..+...++.
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~ 208 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDR 208 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 988 888899999999998877 88899999999999999998888887765
No 12
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.96 E-value=3e-27 Score=214.05 Aligned_cols=200 Identities=19% Similarity=0.223 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccC
Q 009801 145 GKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG 224 (525)
Q Consensus 145 ~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (525)
++|+.+|+++++.|++.+++.||.+|...+++++|+.+|+++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a-------------------------------------- 44 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKA-------------------------------------- 44 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------------------------
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH--------------------------------------
Confidence 356777777777777888888887777777776666666654
Q ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 009801 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALE 304 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~ 304 (525)
++.+++.+++.||.+|..+ ++++|+++|+.||+++++.+++.++++||.+|..|.++.+|+++|+.
T Consensus 45 ------------~~~g~~~a~~~lg~~y~~~--g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 110 (212)
T 3rjv_A 45 ------------AAQGDGDALALLAQLKIRN--PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAIT 110 (212)
T ss_dssp ------------HHTTCHHHHHHHHHHTTSS--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred ------------HHcCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence 4557778888888888763 66778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCC----HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-CChhHHHHHHHHHHcCCC--CcCCHHHHHH
Q 009801 305 WLTHAARQQL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIG--VKRDVKLACK 377 (525)
Q Consensus 305 ~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~--~~~~~~~A~~ 377 (525)
+|+++++.++ +.++++||.+|..|.++.+ |+++|+.+|+++++. +++.++++||.+|..|.+ +.+++++|+.
T Consensus 111 ~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~ 189 (212)
T 3rjv_A 111 LLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALH 189 (212)
T ss_dssp HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHH
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence 8888888887 8888888888888887765 888888888888887 788888888888888776 7888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 009801 378 YFLVAANAGHQKAFYQLAKM 397 (525)
Q Consensus 378 ~~~~a~~~~~~~a~~~l~~~ 397 (525)
||++|++.|+..+...++.+
T Consensus 190 ~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 190 WLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 88888888888888887754
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.3e-25 Score=232.80 Aligned_cols=368 Identities=14% Similarity=0.090 Sum_probs=295.4
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI 160 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~ 160 (525)
+++++.+|..++. .+++++|+..|+++. +|.++.+++.+|.+|.. .+++++|+..|++++. ++++
T Consensus 25 a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 93 (537)
T 3fp2_A 25 AVQLKNRGNHFFT-------AKNFNEAIKYYQYAIELDPNEPVFYSNISACYIS----TGDLEKVIEFTTKALEIKPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHH-------TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchH
Confidence 6778888998887 888999999999964 67899999999999998 8999999999999976 5689
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCC---------------------------CCCchh--hh----
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD---------------------------SPVIEP--IR---- 207 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~---------------------------~~~~~~--~~---- 207 (525)
.+++.+|.++...|++++|+..|+ ++...+........ ...... +.
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 999999999999999999999995 54333221110000 000000 00
Q ss_pred ----------------hccc---chhhh--------hHhhhccCCcHHHHHHHHHHHHc--CCH-------HHHHHHHHH
Q 009801 208 ----------------IHNG---AEENK--------GALRKSRGEDDEAFQILEYQAQK--GNA-------GAMYKIGLF 251 (525)
Q Consensus 208 ----------------~~~~---~~~~~--------~~~~~~~~~~~~A~~~~~~~~~~--~~~-------~a~~~Lg~~ 251 (525)
.... ....+ +......+++++|+..++++... +++ .++..+|.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 0000 01111 22222335789999999998554 554 367888888
Q ss_pred HHhcCCCCccCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhC
Q 009801 252 YYFGLRGLRRDRTKALMWFSKAADKG-EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKG 328 (525)
Q Consensus 252 y~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g 328 (525)
+... +++++|+.+|+++++.. .+.++..+|.++.. .+++++|+.+|+++++.. ++.++..+|.++..
T Consensus 253 ~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 322 (537)
T 3fp2_A 253 HFLK-----NNLLDAQVLLQESINLHPTPNSYIFLALTLAD----KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI- 322 (537)
T ss_dssp HHHT-----TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHhc-----ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-
Confidence 8877 49999999999999862 37899999999998 999999999999998864 78999999999987
Q ss_pred CCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Q 009801 329 YGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGL 404 (525)
Q Consensus 329 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~ 404 (525)
.+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++. +++.++..+|.++..
T Consensus 323 ----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 390 (537)
T 3fp2_A 323 ----LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD---- 390 (537)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----
T ss_pred ----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----
Confidence 56999999999999876 578899999999999 99999999999999987 678899999999998
Q ss_pred cCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERGP--------WSSLSRWALESYLK----------GDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--------~~a~~~l~~~~~~~----------g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
.+++++|+.+|+++++..+ ...++.+|.++... |++++|+.+|+++++. +++.++.++|.
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 470 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ 470 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999997752 23466778889998 9999999999999976 57889999999
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
++.. .+++++|+.+|+++++..
T Consensus 471 ~~~~----------------~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 471 LKLQ----------------MEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHH----------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHH----------------hccHHHHHHHHHHHHHhC
Confidence 9998 778999999999999865
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-26 Score=233.93 Aligned_cols=352 Identities=13% Similarity=0.051 Sum_probs=253.5
Q ss_pred CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 009801 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-----------GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (525)
Q Consensus 122 ~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~-----------~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~ 190 (525)
..+..+..||.+|.. .|++++|+++|++|++ .....++.++|.+|...|++++|+.+|++++++.
T Consensus 49 ~~a~~yn~Lg~~~~~----~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHL----KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 346677889999998 8999999999999974 2346788999999999999999999999999876
Q ss_pred HhhhhccCCCCCchhhhhcccchhhhhH--hhhccCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCccCHHHH
Q 009801 191 VNSFLISKDSPVIEPIRIHNGAEENKGA--LRKSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKA 266 (525)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A 266 (525)
+....... ... .....+.+. +....+++++|+++|+++. +|++++++..+|.++... +..++.++|
T Consensus 125 ~~~~~~~~--~~~------~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l--~~~~~~~~a 194 (472)
T 4g1t_A 125 EKFSSPYR--IES------PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL--DNWPPSQNA 194 (472)
T ss_dssp HHSCCSSC--CCC------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHSCCCCCT
T ss_pred Hhcccccc--hhh------HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCchHHHHH
Confidence 65321100 000 011223333 3445678999999999985 468999999999987654 233577889
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 009801 267 LMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (525)
Q Consensus 267 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~ 342 (525)
+..|+++++. +++.++..+|..+..-....+++++|+.+|++++... .+.++..+|.+|.. .+++++|+..
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-----~~~~~~A~~~ 269 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-----KDEPDKAIEL 269 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-----TTCHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH-----cCchHHHHHH
Confidence 9999999875 6788888888776653333678999999999998764 88999999999987 6799999999
Q ss_pred HHHHHhC--CChhHHHHHHHHHHcCC---------------CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC
Q 009801 343 FEKAADN--EEAGGHYNLGVMYYKGI---------------GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 343 ~~~a~~~--~~~~a~~~lg~~y~~g~---------------~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g 403 (525)
|+++++. +++.+++.+|.+|.... .....+++|+..|+++.+. .+..++..+|.+|..
T Consensus 270 ~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~--- 346 (472)
T 4g1t_A 270 LKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL--- 346 (472)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH---
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH---
Confidence 9999876 67889999999986410 0123467888999998876 567789999999998
Q ss_pred CcCCHHHHHHHHHHHHHcCChH-----HHHHHHH-HHHhcCCHHHHHHHHHHHHHc------------------------
Q 009801 404 LKKNLHMATALYKLVAERGPWS-----SLSRWAL-ESYLKGDVGKAFLLYSRMAEL------------------------ 453 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~~~-----a~~~l~~-~~~~~g~~~~A~~~~~~a~~~------------------------ 453 (525)
.+++++|+.+|+++++..+.. .++.+|. ..+..|++++|+.+|++|++.
T Consensus 347 -~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 347 -ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425 (472)
T ss_dssp -TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999987422 3456664 356889999999999999754
Q ss_pred --ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 009801 454 --GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGD 512 (525)
Q Consensus 454 --~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 512 (525)
.++.+++++|.+|.. .+++++|+.+|++|++.+ +|.+...+|+
T Consensus 426 ~p~~~~~~~~LG~~~~~----------------~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 426 NGADSEALHVLAFLQEL----------------NEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp CC-CTTHHHHHHHHHHH----------------HHHCC-------------------------
T ss_pred CCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 245689999999988 889999999999999987 6788877774
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=3.6e-25 Score=224.16 Aligned_cols=316 Identities=15% Similarity=0.069 Sum_probs=245.1
Q ss_pred HHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHH
Q 009801 108 MEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLY 183 (525)
Q Consensus 108 ~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y 183 (525)
...+...+.++ .+|.++.+++.+|..|.. .+++++|+.+|+++++ .++..+++.+|.++...|++++|+..|
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLA----AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444445553 366778888888888888 8889999999988875 467888888999998888898888888
Q ss_pred HHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCH
Q 009801 184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR 263 (525)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~ 263 (525)
+++++. .+.++.++..+|.+|...+ ++
T Consensus 84 ~~al~~------------------------------------------------~p~~~~~~~~l~~~~~~~g-----~~ 110 (450)
T 2y4t_A 84 TKVIQL------------------------------------------------KMDFTAARLQRGHLLLKQG-----KL 110 (450)
T ss_dssp HHHHHH------------------------------------------------CTTCHHHHHHHHHHHHHTT-----CH
T ss_pred HHHHhc------------------------------------------------CCCcHHHHHHHHHHHHHcC-----CH
Confidence 887653 3455677777888887773 78
Q ss_pred HHHHHHHHHHHhcCC--H---HHHH------------HHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 009801 264 TKALMWFSKAADKGE--P---QSME------------FLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYL 324 (525)
Q Consensus 264 ~~A~~~~~~a~~~~~--~---~a~~------------~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 324 (525)
++|+.+|+++++.+. + .++. .+|.++.. .+++++|+.+|+++++.. ++.++..+|.+
T Consensus 111 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 186 (450)
T 2y4t_A 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG----SGDYTAAIAFLDKILEVCVWDAELRELRAEC 186 (450)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 888888888776532 3 3433 34666887 889999999999988763 78888999999
Q ss_pred HHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH------
Q 009801 325 YVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQL------ 394 (525)
Q Consensus 325 ~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l------ 394 (525)
|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|++++.. ++...+..+
T Consensus 187 ~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 187 FIK-----EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHH-----TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHH-----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 886 56899999999998765 678889999999999 89999999999998876 455555444
Q ss_pred ------HHHHHcCCCCcCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHH
Q 009801 395 ------AKMFHTGVGLKKNLHMATALYKLVAERGPW------SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQS 460 (525)
Q Consensus 395 ------~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~ 460 (525)
|.++.. .+++++|+.+|+++++..+. ..+..+|.++...|++++|+.+++++++. +++.++.
T Consensus 258 ~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 258 NKLIESAEELIR----DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 778877 88999999999999988653 36778899999999999999999999865 5788999
Q ss_pred HHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDA 513 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 513 (525)
++|.++.. .+++++|+.+|+++++.. +++++..|+.+
T Consensus 334 ~l~~~~~~----------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 334 DRAEAYLI----------------EEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHH----------------TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHH----------------hcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999988 678899999999998764 78888888844
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-25 Score=229.61 Aligned_cols=341 Identities=18% Similarity=0.115 Sum_probs=293.6
Q ss_pred ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCC
Q 009801 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP 201 (525)
Q Consensus 123 ~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~ 201 (525)
++++++.+|..+.. .+++++|+.+|++++.. .++.++..+|.++...|++++|+..++++++..|.+.
T Consensus 5 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------- 73 (514)
T 2gw1_A 5 YALALKDKGNQFFR----NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS------- 73 (514)
T ss_dssp HHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH-------
T ss_pred hHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH-------
Confidence 46788999999998 99999999999999874 3789999999999999999999999999998755432
Q ss_pred CchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCC----------------------------------------
Q 009801 202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN---------------------------------------- 241 (525)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------------------------- 241 (525)
.....++.++...|++++|+..|+++.....
T Consensus 74 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 74 ---------KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp ---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred ---------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 2356789999999999999999998755432
Q ss_pred -----------------------------------------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh-----
Q 009801 242 -----------------------------------------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----- 275 (525)
Q Consensus 242 -----------------------------------------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----- 275 (525)
+.+++.+|.++... ...+++++|+.+|+++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK--RSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS--CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh--hhhccHHHHHHHHHHHHHHhhhh
Confidence 67778888877651 112599999999999998
Q ss_pred -----------cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 009801 276 -----------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYF 343 (525)
Q Consensus 276 -----------~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~ 343 (525)
..++.+++.+|.++.. .+++++|+.+|+++++.. .+.++..+|.++.. .+++++|+.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~ 293 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFL----KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-----RNDSTEYYNYF 293 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT-----SSCCTTGGGHH
T ss_pred hccCccccccChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-----CCCHHHHHHHH
Confidence 3456789999999999 999999999999998764 38889999999987 56999999999
Q ss_pred HHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 344 EKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 344 ~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
+++++. .++.++..+|.+|.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.++++++
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 294 DKALKLDSNNSSVYYHRGQMNFI----LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR----ENKFDDCETLFSEAK 365 (514)
T ss_dssp HHHHTTCTTCTHHHHHHHHHHHH----TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT----TTCHHHHHHHHHHHH
T ss_pred HHHhhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 999976 578899999999999 99999999999999987 577899999999987 999999999999999
Q ss_pred HcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--h------HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHH
Q 009801 420 ERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (525)
Q Consensus 420 ~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~------~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (525)
+.. .+.++..+|.++...|++++|+.+++++++.. + ..++.++|.++...+ ..++++
T Consensus 366 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~ 432 (514)
T 2gw1_A 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP-------------TVENFI 432 (514)
T ss_dssp HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC-------------CTTHHH
T ss_pred HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-------------hcCCHH
Confidence 886 47788999999999999999999999998763 3 238999999987510 035789
Q ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 490 CAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 490 ~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
+|+.+|+++++.. ++.+++.+|.+|.
T Consensus 433 ~A~~~~~~a~~~~~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 433 EATNLLEKASKLDPRSEQAKIGLAQMKL 460 (514)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 9999999998754 7899999999997
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=2.4e-24 Score=210.58 Aligned_cols=303 Identities=16% Similarity=0.075 Sum_probs=240.9
Q ss_pred ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCC
Q 009801 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (525)
Q Consensus 123 ~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~ 200 (525)
++++++.+|..+.. .+++++|+..|+++++ ++++.+++.+|.++...|++++|+..|+++++.
T Consensus 2 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLA----AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------- 66 (359)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------
Confidence 35666777777776 7777777777777754 356777777777777777777777777776542
Q ss_pred CCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC--
Q 009801 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-- 278 (525)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-- 278 (525)
.++++.++..+|.++...+ ++++|+.+|+++++...
T Consensus 67 -------------------------------------~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~ 104 (359)
T 3ieg_A 67 -------------------------------------KMDFTAARLQRGHLLLKQG-----KLDEAEDDFKKVLKSNPSE 104 (359)
T ss_dssp -------------------------------------CTTCHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHTSCCCH
T ss_pred -------------------------------------CCCcchHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCcc
Confidence 3445666777777776663 77777777777776533
Q ss_pred ---HHHHHHH------------HHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 009801 279 ---PQSMEFL------------GEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKE 341 (525)
Q Consensus 279 ---~~a~~~L------------g~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~ 341 (525)
+.++..+ |.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~ 175 (359)
T 3ieg_A 105 QEEKEAESQLVKADEMQRLRSQALDAFD----GADYTAAITFLDKILEVCVWDAELRELRAECFIK-----EGEPRKAIS 175 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-----CCCHHHHHH
Confidence 3344444 788888 999999999999998764 78999999999987 569999999
Q ss_pred HHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH------------HHHHHHHcCCCCc
Q 009801 342 YFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFY------------QLAKMFHTGVGLK 405 (525)
Q Consensus 342 ~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~------------~l~~~y~~g~g~~ 405 (525)
+++++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..++. .+|.++.. .
T Consensus 176 ~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~ 247 (359)
T 3ieg_A 176 DLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----D 247 (359)
T ss_dssp HHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH----c
Confidence 99999876 578899999999999 99999999999999876 4444433 34777887 8
Q ss_pred CCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccC
Q 009801 406 KNLHMATALYKLVAERGPW------SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMG 477 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~ 477 (525)
+++++|+..++++++..+. .++..+|.++...|++++|+.+++++++. +++.++.++|.++..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 318 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI--------- 318 (359)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---------
Confidence 9999999999999988753 34667899999999999999999999886 578899999999988
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 478 ESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 478 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.+++++|+.+|+++++.. ++++...|+.++.
T Consensus 319 -------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 319 -------EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp -------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 678999999999999865 6888888888775
No 18
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.3e-25 Score=236.01 Aligned_cols=338 Identities=16% Similarity=0.040 Sum_probs=292.8
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhh---------------------------
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYG--------------------------- 135 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~--------------------------- 135 (525)
+.+++.+|..+.. .+++++|+..|+++. ++.+..++..++.++.
T Consensus 200 ~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 200 ASMCYLRGQVYTN-------LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 6678888888887 888999999999965 5678888887766442
Q ss_pred -------cCCCccCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhh
Q 009801 136 -------MGMMRERNKGKAFLYHHFAAEG-GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIR 207 (525)
Q Consensus 136 -------~g~g~~~d~~~A~~~~~~a~~~-~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 207 (525)
......+++++|+.+|+++.+. .+..++..++.+|...|++++|+.+|+++++..+.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------- 338 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN-------------- 338 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc--------------
Confidence 1111367899999999998774 689999999999999999999999999998764432
Q ss_pred hcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHH
Q 009801 208 IHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSME 283 (525)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 283 (525)
......++.++...|++++|++.+++... +.++.++..+|.+|...+ ++++|+.+|+++++. .+..++.
T Consensus 339 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~ 411 (597)
T 2xpi_A 339 --LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN-----KISEARRYFSKSSTMDPQFGPAWI 411 (597)
T ss_dssp --CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHhCCCCHHHHH
Confidence 13356678888999999999999999865 478999999999999884 999999999999874 6788999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHH
Q 009801 284 FLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG 359 (525)
Q Consensus 284 ~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 359 (525)
.+|.+|.. .+++++|+.+|+++++.. +..++..+|.+|.. .|++++|+.+|+++++. .++.++..+|
T Consensus 412 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 412 GFAHSFAI----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-----LGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp HHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 99999999 999999999999998764 78899999999987 67999999999999875 5788999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc------C-C--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANA------G-H--QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~------~-~--~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
.+|.. .+++++|+.+|+++++. . + ..++..++.++.. .+++++|+.+++++++.++ +.++.
T Consensus 483 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 483 VVAFN----KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK----LKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHH----hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999 99999999999999875 2 1 6789999999998 9999999999999998874 67889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
.+|.++...|++++|+.+|+++++. +++.++..++.+|.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999987 57889999988763
No 19
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.3e-24 Score=218.29 Aligned_cols=366 Identities=12% Similarity=0.037 Sum_probs=280.3
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE- 156 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~- 156 (525)
.+|.++.+++.+|..++. .+++++|+..|+++. .+.++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 21 ~~p~~~~~~~~~~~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLA-------AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA----MGKSKAALPDLTKVIQL 89 (450)
T ss_dssp --CHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 466778889999999887 889999999999965 67889999999999998 8999999999999986
Q ss_pred -CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHH
Q 009801 157 -GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 157 -~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
.++..++..+|.+|...|++++|+..|+++++..+... .+...+..
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------------------------~~~~~~~~ 136 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN---------------------------------EEKEAQSQ 136 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH---------------------------------HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------------------------------hhHHHHHH
Confidence 46899999999999999999999999999876432210 00001111
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-
Q 009801 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ- 312 (525)
Q Consensus 236 ~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~- 312 (525)
..........+.+|.++... +++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++.
T Consensus 137 l~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGS-----GDYTAAIAFLDKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 11111233456667777766 3888888888888764 567888888888888 88888888888888764
Q ss_pred -CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHH------------HHHHHcCCCCcCCHHHHHH
Q 009801 313 -QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNL------------GVMYYKGIGVKRDVKLACK 377 (525)
Q Consensus 313 -~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l------------g~~y~~g~~~~~~~~~A~~ 377 (525)
.++.++..+|.++.. .+++++|+.+|+++++. +++.++..+ |.++.. .+++++|+.
T Consensus 208 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~ 278 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQ-----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATS 278 (450)
T ss_dssp CSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 478888888888876 56888888888888765 344554444 999999 999999999
Q ss_pred HHHHHHHc--CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009801 378 YFLVAANA--GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSR 449 (525)
Q Consensus 378 ~~~~a~~~--~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~ 449 (525)
+|+++++. ++ ...+..+|.++.. .+++++|+.+++++++..+ +.++..+|.++...|++++|+.+|++
T Consensus 279 ~~~~~l~~~p~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 279 KYESVMKTEPSIAEYTVRSKERICHCFSK----DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999887 33 3478889999997 9999999999999998864 68899999999999999999999999
Q ss_pred HHHc--ChHHHHHHHHHHHhhhC-----CCccccCCCCCCCChHhHHHHHHHHHH-HHhCC-----CH-------HHHHH
Q 009801 450 MAEL--GYEVAQSNAAWILDKYG-----EGSMCMGESGFCTDAERHQCAHSLWWQ-ASEQG-----NE-------HAALL 509 (525)
Q Consensus 450 a~~~--~~~~a~~~la~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~-----~~-------~a~~~ 509 (525)
+++. +++.++..++.+....+ +.+..+|... ..+.+++.+.|++ +++.. .. .....
T Consensus 355 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~----~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~ 430 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR----NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFID 430 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST----TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc----cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Confidence 9876 57888889987654422 3333344211 2244678888887 55432 12 24556
Q ss_pred HHHHHH
Q 009801 510 IGDAYY 515 (525)
Q Consensus 510 lg~~y~ 515 (525)
++..|+
T Consensus 431 i~~ay~ 436 (450)
T 2y4t_A 431 IAAAKE 436 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888877
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=9.3e-24 Score=206.43 Aligned_cols=316 Identities=12% Similarity=0.045 Sum_probs=253.6
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCC
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN 159 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~ 159 (525)
++++++.+|..++. .+++++|+..|+++. +|.++.+++.+|.+|.. .+++++|+.+|+++++ +++
T Consensus 2 ~~~~~~~~~~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~ 70 (359)
T 3ieg_A 2 DVEKHLELGKKLLA-------AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA----MGKSKAALPDLTKVIALKMDF 70 (359)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCc
Confidence 45678899998887 889999999999964 67889999999999998 9999999999999976 468
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH---hhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV---NSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 236 (525)
..++..+|.++...|++++|+..|+++++..+ ..... ...++
T Consensus 71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~~l~------------------- 115 (359)
T 3ieg_A 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA----------------ESQLV------------------- 115 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHH----------------HHHHH-------------------
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHH----------------HHHHH-------------------
Confidence 89999999999999999999999999976433 21100 00010
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
..........+|.++... +++++|+.+++++++. +++.++..+|.++.. .+++++|+.+++++++..
T Consensus 116 -~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~ 185 (359)
T 3ieg_A 116 -KADEMQRLRSQALDAFDG-----ADYTAAITFLDKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLKS 185 (359)
T ss_dssp -HHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCS
T ss_pred -HHHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence 001123455567777777 4888888888888764 567888888888888 888888888888888753
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHH------------HHHHHHHHcCCCCcCCHHHHHHH
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGH------------YNLGVMYYKGIGVKRDVKLACKY 378 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~------------~~lg~~y~~g~~~~~~~~~A~~~ 378 (525)
++.++..+|.++.. .+++++|+.+++++++. +++.++ ..+|.++.. .+++++|+..
T Consensus 186 ~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~ 256 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQ-----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSK 256 (359)
T ss_dssp CCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 78888888888876 56888888888888765 334433 345888999 9999999999
Q ss_pred HHHHHHc--CCH----HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 379 FLVAANA--GHQ----KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 379 ~~~a~~~--~~~----~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
|+++++. .++ .++..+|.++.. .+++++|+.+++++++..| +.++..+|.++...|++++|+.+|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 257 YESVMKTEPSVAEYTVRSKERICHCFSK----DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999986 333 446678999998 9999999999999999864 778899999999999999999999999
Q ss_pred HHc--ChHHHHHHHHHHHhh
Q 009801 451 AEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 451 ~~~--~~~~a~~~la~~~~~ 468 (525)
++. +++.+...++.+...
T Consensus 333 ~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 333 QEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HTTCTTCHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHH
Confidence 987 467777777776644
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-24 Score=221.53 Aligned_cols=340 Identities=13% Similarity=-0.013 Sum_probs=248.7
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh-----------cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM-----------EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHF 153 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----------~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~ 153 (525)
+..+..+|.++.. .|++++|+.+|+++.+ +....++.++|.+|.. .+++++|+.+|++
T Consensus 51 a~~yn~Lg~~~~~-------~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~----~g~~~~A~~~~~k 119 (472)
T 4g1t_A 51 ATMCNLLAYLKHL-------KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH----MGRLSDVQIYVDK 119 (472)
T ss_dssp CHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH----cCChHHHHHHHHH
Confidence 4556678998887 8889999999999742 3446678899999999 9999999999999
Q ss_pred HHcC----------CCHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh--
Q 009801 154 AAEG----------GNIQSKMAVAYTYL--RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL-- 219 (525)
Q Consensus 154 a~~~----------~~~~a~~~la~~y~--~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 219 (525)
+... ..+.++..+|..+. ..+++++|+.+|+++++.+|.+... ...++.+
T Consensus 120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~----------------~~~~~~~~~ 183 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF----------------TSGLAIASY 183 (472)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH----------------HHHHHHHHH
T ss_pred HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH----------------HHHHHHHHH
Confidence 8742 35677888776655 4578999999999999986654321 2333433
Q ss_pred -hhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCC
Q 009801 220 -RKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAG 294 (525)
Q Consensus 220 -~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~ 294 (525)
+...++.++|++.++++++ +.++.++..+|..+...+ ...+++++|+.+|++++.. .++.++..+|.+|..
T Consensus 184 ~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~-~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~--- 259 (472)
T 4g1t_A 184 RLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR-EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR--- 259 (472)
T ss_dssp HHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH---
T ss_pred HhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH---
Confidence 3456888999999999865 578999999998887663 4556899999999999875 678999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCC-----------C---CCccCHHHHHHHHHHHHhC--CChhHHH
Q 009801 295 VERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGY-----------G---VEKKNYTKAKEYFEKAADN--EEAGGHY 356 (525)
Q Consensus 295 ~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~-----------~---~~~~~~~~A~~~~~~a~~~--~~~~a~~ 356 (525)
.+++++|+..|+++++.. ++.++..+|.+|.... + .....+++|+..++++++. .++.++.
T Consensus 260 -~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 338 (472)
T 4g1t_A 260 -KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338 (472)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH
T ss_pred -cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh
Confidence 999999999999999864 7899999999875310 0 0012467889999998765 5778999
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--H---HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---------
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANAGH--Q---KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--------- 422 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~--~---~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--------- 422 (525)
.+|.+|.. .+++++|+.+|+++++... . ..+..+|.+... ..+++++|+.+|+++++..
T Consensus 339 ~lg~~~~~----~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ai~~y~kal~i~~~~~~~~~~ 411 (472)
T 4g1t_A 339 ILASLHAL----ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY---QMKCEDKAIHHFIEGVKINQKSREKEKM 411 (472)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH---TSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred hHHHHHHH----hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999 9999999999999998732 1 234566655443 2789999999999998764
Q ss_pred -----------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHH
Q 009801 423 -----------------PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAA 463 (525)
Q Consensus 423 -----------------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la 463 (525)
++.++..+|.++..+|++++|+.+|++|++.+ +|.+...+|
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 24678899999999999999999999999875 566666655
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=9.8e-24 Score=218.61 Aligned_cols=349 Identities=14% Similarity=0.066 Sum_probs=284.3
Q ss_pred ccccCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCC
Q 009801 63 TEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGM 138 (525)
Q Consensus 63 ~~~~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~ 138 (525)
....+++..|+..|+++ .+|+++.+++.+|.+++. .+++++|+..++++. +|+++.+++.+|.+|..
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 105 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIS-------TGDLEKVIEFTTKALEIKPDHSKALLRRASANES-- 105 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--
Confidence 44457899999999998 778889999999999987 889999999999964 68899999999999998
Q ss_pred CccCCHHHHHHHHHHHHcCC--CHH-------------------------------------------------------
Q 009801 139 MRERNKGKAFLYHHFAAEGG--NIQ------------------------------------------------------- 161 (525)
Q Consensus 139 g~~~d~~~A~~~~~~a~~~~--~~~------------------------------------------------------- 161 (525)
.+++++|+..|+ ++... ...
T Consensus 106 --~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 106 --LGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp --HTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred --cCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 899999999996 54321 110
Q ss_pred -------------HHHHHHHHHhc--------cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 162 -------------SKMAVAYTYLR--------QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 162 -------------a~~~la~~y~~--------~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
....++.++.. .+++++|+..|+++++..+.+... ..........++.++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~---------~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL---------RENAALALCYTGIFH 253 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH---------HHHHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh---------hHHHHHHHHHHHHHH
Confidence 22233333332 247888888888887665442110 111112355678889
Q ss_pred hccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC
Q 009801 221 KSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER 297 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~ 297 (525)
...|++++|++.++++... .++.++..+|.++... +++++|+.+|+++++. +++.++..+|.+|.. .+
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 324 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADK-----ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI----LQ 324 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCS-----SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred HhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-----cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cC
Confidence 9999999999999998665 2389999999999777 5999999999999875 678999999999999 99
Q ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHH
Q 009801 298 NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVK 373 (525)
Q Consensus 298 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~ 373 (525)
++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+++++++. +++.++..+|.++.. .++++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 395 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-----QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD----RGDFD 395 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHH
Confidence 9999999999998864 68899999999987 57999999999999876 678899999999999 99999
Q ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCCCc----------CCHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 009801 374 LACKYFLVAANAG--------HQKAFYQLAKMFHTGVGLK----------KNLHMATALYKLVAERGP--WSSLSRWALE 433 (525)
Q Consensus 374 ~A~~~~~~a~~~~--------~~~a~~~l~~~y~~g~g~~----------~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 433 (525)
+|+.+|+++++.. ....+..+|.++.. . +++++|+.+|+++++..| ..++..+|.+
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR----QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH----HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH----HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999998752 12335667777776 6 999999999999999874 6788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 009801 434 SYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+...|++++|+.+|+++++..
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999874
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=7.7e-23 Score=197.64 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCH
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER-NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNY 336 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~ 336 (525)
++++|+.+++++++. .++.+++.+|.++.. .+ ++++|+.+|+++++.. ++.++..+|.++.. .+++
T Consensus 71 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-----~~~~ 141 (330)
T 3hym_B 71 KANELFYLSHKLVDLYPSNPVSWFAVGCYYLM----VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV-----ESEH 141 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH----SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH-----HTCH
T ss_pred hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----ccCH
Confidence 444444444444432 234444444444444 44 4444444444444332 34444444444443 3344
Q ss_pred HHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 337 TKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMAT 412 (525)
Q Consensus 337 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~ 412 (525)
++|+.+|+++++. ++..++..+|.+|.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 213 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAE 213 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHH
Confidence 4444444444432 233444445555544 44555555555544443 334444455555444 44555555
Q ss_pred HHHHHHHHcC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCC
Q 009801 413 ALYKLVAERG-----------PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGES 479 (525)
Q Consensus 413 ~~~~~a~~~~-----------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~ 479 (525)
.+++++++.. ...++..+|.++...|++++|+.+++++++. .++.++.++|.++..
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----------- 282 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL----------- 282 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH-----------
Confidence 5555554421 1334455555555555555555555555443 244455555555554
Q ss_pred CCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 480 GFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.+++++|+.+|+++++.. ++.++..||.++.
T Consensus 283 -----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 283 -----MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp -----HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred -----hccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 444555555555554432 4555555555553
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.2e-22 Score=194.38 Aligned_cols=274 Identities=16% Similarity=0.093 Sum_probs=198.8
Q ss_pred cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC
Q 009801 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (525)
Q Consensus 121 ~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~ 198 (525)
+.++..+..+|..+.. .+++++|+.+|++++.. .+..++..++.++...+++++|+..++++++
T Consensus 19 ~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---------- 84 (330)
T 3hym_B 19 QENLDVVVSLAERHYY----NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD---------- 84 (330)
T ss_dssp -CCCTTHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH----------
T ss_pred hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH----------
Confidence 3455555666665555 55666666666665442 3455555566666666666666666665543
Q ss_pred CCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--
Q 009801 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-- 276 (525)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-- 276 (525)
..+.++.+++.+|.++...+ .++++|+.+|+++++.
T Consensus 85 --------------------------------------~~~~~~~~~~~l~~~~~~~~----~~~~~A~~~~~~a~~~~~ 122 (330)
T 3hym_B 85 --------------------------------------LYPSNPVSWFAVGCYYLMVG----HKNEHARRYLSKATTLEK 122 (330)
T ss_dssp --------------------------------------HCTTSTHHHHHHHHHHHHSC----SCHHHHHHHHHHHHTTCT
T ss_pred --------------------------------------hCcCCHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhCC
Confidence 23455677777787776662 2777888888887765
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
.++.++..+|.++.. .+++++|+.+|+++++.. +..++..+|.++.. .+++++|+.+++++++. .++
T Consensus 123 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 123 TYGPAWIAYGHSFAV----ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-----TNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp TCTHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCTTCH
T ss_pred ccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHhCCCCh
Confidence 456777888888877 778888888888887653 56777778888776 45888888888888765 466
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-----------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
.++..+|.+|.. .+++++|+.+++++++. ..+.++..+|.++.. .+++++|+.+++++++.
T Consensus 194 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 194 FVMHEVGVVAFQ----NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhh
Confidence 778888888888 88888888888888763 345688888888887 88888888888888877
Q ss_pred C--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 422 G--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 422 ~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
. +..++..+|.++...|++++|+.+++++++. +++.++..++.++.
T Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 6 3678888888888899999999999888776 57888888888874
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=4.2e-22 Score=195.88 Aligned_cols=222 Identities=15% Similarity=0.089 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LY 315 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~ 315 (525)
.++.+++.+|.+|...+ ++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +.
T Consensus 96 ~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENE-----QELLAISALRRCLELKPDNQTALMALAVSFTN----ESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp TCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSTTTG
T ss_pred CCHHHHHHHHHHHHHCc-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcH
Confidence 34555555555555552 555555555555543 345555555555555 555555555555555432 11
Q ss_pred ----------------HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--C--ChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 316 ----------------SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--E--EAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 316 ----------------~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
.....++.++. .+++++|+.+|+++++. . ++.++..+|.+|.. .+++++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A 236 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLLS------DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGEYDKA 236 (368)
T ss_dssp GGCC---------------CTTHHHHH------HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHhh------cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH----cCCHHHH
Confidence 11225666663 45999999999999876 3 56889999999999 9999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 376 CKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 376 ~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..+ ..++..+|.++...|++++|+.+|++++
T Consensus 237 ~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 237 VDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999986 578899999999998 9999999999999998864 6788999999999999999999999998
Q ss_pred Hc--Ch-----------HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 452 EL--GY-----------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 452 ~~--~~-----------~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
+. .+ ..++.++|.++.. .+++++|..+++++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 313 NMQRKSRGPRGEGGAMSENIWSTLRLALSM----------------LGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHTC------CCCCCHHHHHHHHHHHHH----------------HTCGGGHHHHHTTCHH
T ss_pred HhCCCCCCccccccchhhHHHHHHHHHHHH----------------hCChHhHHHhHHHHHH
Confidence 76 33 7899999999998 5677888888876654
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=5.3e-21 Score=187.97 Aligned_cols=291 Identities=15% Similarity=0.109 Sum_probs=195.5
Q ss_pred ccCCCCCCCc-cccCC--CCCCC----CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhh
Q 009801 65 ENLDPGSWSP-VFEPS--IDPGA----INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYG 135 (525)
Q Consensus 65 ~~~~~~~a~~-~~~~~--~~~~~----~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~ 135 (525)
..+++.+|+. .|+++ ..+.+ ..+++.+|..++. .+++++|+.+++++. ++.++.+++.+|.+|.
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-------EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-------TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3467778887 77766 33333 5678999999887 889999999999976 5688999999999999
Q ss_pred cCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccch
Q 009801 136 MGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAE 213 (525)
Q Consensus 136 ~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (525)
. .+++++|+.+|+++++ +++..++..+|.+|...|++++|+..|++++...+........
T Consensus 110 ~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------------- 171 (368)
T 1fch_A 110 E----NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP-------------- 171 (368)
T ss_dssp H----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred H----CcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH--------------
Confidence 8 9999999999999976 4689999999999999999999999999998865443211000
Q ss_pred hhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--C--CHHHHHHHHHHH
Q 009801 214 ENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G--EPQSMEFLGEIY 289 (525)
Q Consensus 214 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~Lg~~y 289 (525)
.+ .. ............+|.++ .. +++++|+.+|+++++. . ++.++..+|.+|
T Consensus 172 --~~-------~~---------~~~~~~~~~~~~~~~~~-~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 172 --AE-------EG---------AGGAGLGPSKRILGSLL-SD-----SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 227 (368)
T ss_dssp --------------------------------CTTHHHH-HH-----HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred --HH-------HH---------hhhhcccHHHHHHHHHh-hc-----ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence 00 00 00001112223445554 22 2677777777776654 2 456667777777
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcC
Q 009801 290 ARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKG 365 (525)
Q Consensus 290 ~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g 365 (525)
.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|..
T Consensus 228 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~- 297 (368)
T 1fch_A 228 NL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN- 297 (368)
T ss_dssp HH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 76 677777777777776543 56677777777765 45777777777776654 456677777777777
Q ss_pred CCCcCCHHHHHHHHHHHHHc--CC-----------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 366 IGVKRDVKLACKYFLVAANA--GH-----------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 366 ~~~~~~~~~A~~~~~~a~~~--~~-----------~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
.+++++|+.+|+++++. ++ ..++..+|.++.. .+++++|..+++++++.
T Consensus 298 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 298 ---LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM----LGQSDAYGAADARDLST 359 (368)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH----HTCGGGHHHHHTTCHHH
T ss_pred ---CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH----hCChHhHHHhHHHHHHH
Confidence 77777777777777654 33 5677777777776 77777777777666543
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=2.8e-21 Score=190.01 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
..+++.+|..+...|++++|+..|+++++ ..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------------------------------------~~p 96 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL------------------------------------------------QDP 96 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH------------------------------------------------HCT
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------------------hCc
Confidence 35588889999999999999999988865 345
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C-
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L- 314 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~- 314 (525)
+++.+++.+|.+|...+ ++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +
T Consensus 97 ~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~ 167 (365)
T 4eqf_A 97 GDAEAWQFLGITQAENE-----NEQAAIVALQRCLELQPNNLKALMALAVSYTN----TSHQQDACEALKNWIKQNPKYK 167 (365)
T ss_dssp TCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc----cccHHHHHHHHHHHHHhCccch
Confidence 67889999999999884 999999999999875 678999999999999 999999999999998764 1
Q ss_pred ---------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--C--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 315 ---------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--E--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 315 ---------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
+.....+|.++.. .+++++|+.+|+++++. . ++.+++.+|.+|.. .+++++|+.+|++
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 238 (365)
T 4eqf_A 168 YLVKNKKGSPGLTRRMSKSPVD-----SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL----SGEFNRAIDAFNA 238 (365)
T ss_dssp CC-------------------C-----CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH----HTCHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 2233445777765 67999999999999876 3 67899999999999 9999999999999
Q ss_pred HHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---
Q 009801 382 AANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--- 454 (525)
Q Consensus 382 a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--- 454 (525)
+++. +++.++..+|.++.. .+++++|+.+|+++++..| ..++..+|.++...|++++|+.+|+++++..
T Consensus 239 al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 239 ALTVRPEDYSLWNRLGATLAN----GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9987 678999999999998 9999999999999999874 7788999999999999999999999998763
Q ss_pred -----------hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHH
Q 009801 455 -----------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQ 497 (525)
Q Consensus 455 -----------~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 497 (525)
+..++.+++.++.. .++.+.|....++
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 315 RNQQQVPHPAISGNIWAALRIALSL----------------MDQPELFQAANLG 352 (365)
T ss_dssp ------------CHHHHHHHHHHHH----------------HTCHHHHHHHHTT
T ss_pred CCCcccchhhhHHHHHHHHHHHHHH----------------cCcHHHHHHHHHh
Confidence 25678889999887 5566777666554
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=5.5e-21 Score=187.93 Aligned_cols=190 Identities=13% Similarity=0.049 Sum_probs=137.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG------------EPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~------------~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
.++.++..+|.+|...+ ++++|+.+|+++++.. .+.....+|.++.. .+++++|+.+|+
T Consensus 131 ~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 201 (365)
T 4eqf_A 131 NNLKALMALAVSYTNTS-----HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYL 201 (365)
T ss_dssp TCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccc-----cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHH
Confidence 33445555555555442 5555555555555431 23344556888887 888999999999
Q ss_pred HHHHcC----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 308 HAARQQ----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 308 ~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
++++.. ++.++..+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|++
T Consensus 202 ~al~~~p~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQTGLGVLFHL-----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN----GDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHhCcCccCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 988763 57888899988876 56899999999998865 577888999999999 8999999999999
Q ss_pred HHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCHHHHHH
Q 009801 382 AANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--------------WSSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 382 a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------------~~a~~~l~~~~~~~g~~~~A~~ 445 (525)
+++. +++.++.++|.+|.. .+++++|+.+|+++++..+ ...+..++.++..+|+.+.|..
T Consensus 273 al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 273 ALEIQPGFIRSRYNLGISCIN----LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8876 578889999999987 8899999999999987641 4677889999999999998888
Q ss_pred HHHHHH
Q 009801 446 LYSRMA 451 (525)
Q Consensus 446 ~~~~a~ 451 (525)
..++.+
T Consensus 349 ~~~~~l 354 (365)
T 4eqf_A 349 ANLGDL 354 (365)
T ss_dssp HHTTCC
T ss_pred HHHhhH
Confidence 776644
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=5.6e-20 Score=177.20 Aligned_cols=225 Identities=15% Similarity=0.080 Sum_probs=191.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-- 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-- 313 (525)
.++++.++..+|.++...+ ++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++..
T Consensus 51 ~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 51 APEREEAWRSLGLTQAENE-----KDGLAIIALNHARMLDPKDIAVHAALAVSHTN----EHNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSTT
T ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCc
Confidence 3467888999999998884 999999999999875 578899999999999 999999999999998764
Q ss_pred CHHHHHHH--------------HH-HHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 314 LYSAYNGI--------------GY-LYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLAC 376 (525)
Q Consensus 314 ~~~a~~~l--------------g~-~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~ 376 (525)
+......+ +. ++. ..+++++|+.+++++++. .++.++..+|.+|.. .+++++|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~ 192 (327)
T 3cv0_A 122 YEQLGSVNLQADVDIDDLNVQSEDFFFA-----APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL----SNNYDSAA 192 (327)
T ss_dssp TTTC--------------------CCTT-----SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHhHHHH-----HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hccHHHHH
Confidence 33333333 33 233 356999999999999876 478899999999999 99999999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 377 KYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 377 ~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.+++++++. +++.++..+|.++.. .+++++|+.+++++++..+ ..++..+|.++...|++++|+.+++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 193 ANLRRAVELRPDDAQLWNKLGATLAN----GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999977 578999999999998 9999999999999999864 67889999999999999999999999987
Q ss_pred c--C------------hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 453 L--G------------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 453 ~--~------------~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
. . ++.++.+++.++.. .+++++|...++++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 269 MQVGGTTPTGEASREATRSMWDFFRMLLNV----------------MNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHTTSCC-----CCTHHHHHHHHHHHHHHH----------------TTCHHHHHHHTTCCSH
T ss_pred hCCccccccccchhhcCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHH
Confidence 5 4 57899999999998 6688999999887654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=4.5e-20 Score=177.87 Aligned_cols=270 Identities=14% Similarity=0.091 Sum_probs=183.1
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CC
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GN 159 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~ 159 (525)
++..++.+|..++. .+++++|+..++++. .+.++.+++.+|.+|.. .+++++|+.+|+++++. ++
T Consensus 20 ~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~ 88 (327)
T 3cv0_A 20 YHENPMEEGLSMLK-------LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKD 88 (327)
T ss_dssp GSSCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCC
Confidence 45566777776665 667777777777753 45566666666666666 66666666666666542 35
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
..++..+|.++...|++++|+..|+++++. .+
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------------------------------------~~ 120 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLS------------------------------------------------QP 120 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------------------------------------------ST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------------------------CC
Confidence 566666666666666666666666555431 11
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHH-HH-HHHcCCCCCCCHHHHHHHHHHHHHcC--CH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFL-GE-IYARGAGVERNYTKALEWLTHAARQQ--LY 315 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L-g~-~y~~g~~~~~~~~~A~~~~~~a~~~~--~~ 315 (525)
.+...+..+..... .......+ +. ++.. .+++++|+.+++++++.. ++
T Consensus 121 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 121 QYEQLGSVNLQADV------------------------DIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp TTTTC--------------------------------------------CCTTS----HHHHHHHHHHHHHHHHHSTTCH
T ss_pred ccHHHHHHHhHHHH------------------------HHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCCH
Confidence 11222211110000 00011122 33 3555 678888888888887654 67
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~ 391 (525)
.++..+|.++.. .+++++|+.+++++++. +++.++..+|.+|.. .+++++|+.+|+++++. +++.++
T Consensus 173 ~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 173 QLHASLGVLYNL-----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp HHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHH-----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 788888888876 56888888888888765 467788889999988 88999999999988876 568888
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--------------WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+|.++.. .+++++|+.+++++++..+ ..++..+|.++...|++++|...++++++.
T Consensus 244 ~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 244 YNMAVSYSN----MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHH----hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 899999987 8899999999999987653 357778999999999999999999877654
No 31
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.85 E-value=3.5e-19 Score=177.12 Aligned_cols=282 Identities=13% Similarity=0.066 Sum_probs=226.6
Q ss_pred ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CC----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhc
Q 009801 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196 (525)
Q Consensus 123 ~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~----~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~ 196 (525)
...+++.+|..+.. .+++++|+.+|+++++. ++ ..++..+|.++...|++++|+.+|+++++......
T Consensus 8 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-- 81 (406)
T 3sf4_A 8 SCLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-- 81 (406)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence 45567788888887 88999999999988764 34 36788899999999999999999998876532210
Q ss_pred cCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc
Q 009801 197 SKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (525)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (525)
..+..+.++..+|.+|...+ ++++|+.+++++++.
T Consensus 82 ----------------------------------------~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~ 116 (406)
T 3sf4_A 82 ----------------------------------------DQLGEAKASGNLGNTLKVLG-----NFDEAIVCCQRHLDI 116 (406)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHH
T ss_pred ----------------------------------------ccHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Confidence 01223567888999998874 999999999998865
Q ss_pred ----CC----HHHHHHHHHHHHcCCCCCCC--------------------HHHHHHHHHHHHHc----C----CHHHHHH
Q 009801 277 ----GE----PQSMEFLGEIYARGAGVERN--------------------YTKALEWLTHAARQ----Q----LYSAYNG 320 (525)
Q Consensus 277 ----~~----~~a~~~Lg~~y~~g~~~~~~--------------------~~~A~~~~~~a~~~----~----~~~a~~~ 320 (525)
++ +.++..+|.+|.. .++ +++|+.+++++++. + ...++..
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 192 (406)
T 3sf4_A 117 SRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGN 192 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 23 4588899999998 888 99999999998764 1 3567889
Q ss_pred HHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC-
Q 009801 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH- 387 (525)
Q Consensus 321 lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~- 387 (525)
+|.++.. .+++++|+.+++++++. ++ +.++..+|.+|.. .+++++|+.+++++++. ++
T Consensus 193 la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 193 LGNTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHH-----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCcCc
Confidence 9999986 66999999999999865 22 3388999999999 99999999999999865 22
Q ss_pred ---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 009801 388 ---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--- 453 (525)
Q Consensus 388 ---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--- 453 (525)
..++..+|.+|.. .+++++|+.+++++++.. + ..++..+|.++...|++++|+.+++++++.
T Consensus 264 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 6688899999998 999999999999998763 2 557889999999999999999999999865
Q ss_pred -C----hHHHHHHHHHHHhhhCCC
Q 009801 454 -G----YEVAQSNAAWILDKYGEG 472 (525)
Q Consensus 454 -~----~~~a~~~la~~~~~~~~~ 472 (525)
+ ...++..+|.++...|+.
T Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 340 VGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCcchhHHHHHHHHHHHHhhHh
Confidence 2 356888999999886654
No 32
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.8e-19 Score=179.17 Aligned_cols=280 Identities=16% Similarity=0.103 Sum_probs=228.5
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 238 (525)
...++..+|..+...|++++|+.+|+++++..+.+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------------- 43 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-------------------------------------------- 43 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH--------------------------------------------
Confidence 456778888888888999999988888866421100
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
...+.++..+|.+|...+ ++++|+.+++++++. + .+.++..+|.+|.. .+++++|+.++++++
T Consensus 44 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 44 KTLSAIYSQLGNAYFYLH-----DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV----LGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 001467889999998884 999999999998764 2 35688999999999 999999999999998
Q ss_pred HcC----C----HHHHHHHHHHHHhCCCCCccC--------------------HHHHHHHHHHHHhC----C----ChhH
Q 009801 311 RQQ----L----YSAYNGIGYLYVKGYGVEKKN--------------------YTKAKEYFEKAADN----E----EAGG 354 (525)
Q Consensus 311 ~~~----~----~~a~~~lg~~~~~g~~~~~~~--------------------~~~A~~~~~~a~~~----~----~~~a 354 (525)
+.. + +.++..+|.+|.. .++ +++|+.+++++++. + .+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 189 (406)
T 3sf4_A 115 DISRELNDKVGEARALYNLGNVYHA-----KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH-----HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHH-----cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 752 2 5588999999986 568 99999999998764 2 2457
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---- 422 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 422 (525)
+..+|.+|.. .+++++|+.+++++++. ++ ..++.++|.+|.. .+++++|+.+++++++..
T Consensus 190 ~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 190 FGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp HHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCc
Confidence 8899999999 99999999999999865 22 3488999999998 999999999999998663
Q ss_pred C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHH
Q 009801 423 P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----G----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQC 490 (525)
Q Consensus 423 ~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (525)
+ ..++..+|.++...|++++|+.+++++++. + ...++.++|.++.. .+++++
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~ 325 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA----------------LGNHDQ 325 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------HTCHHH
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----------------cCCHHH
Confidence 2 557789999999999999999999999865 2 26688899999988 778999
Q ss_pred HHHHHHHHHhC----C----CHHHHHHHHHHHHcccccC
Q 009801 491 AHSLWWQASEQ----G----NEHAALLIGDAYYYGRVRH 521 (525)
Q Consensus 491 A~~~~~~a~~~----~----~~~a~~~lg~~y~~g~g~~ 521 (525)
|+.+|+++++. + ...++..||.+|. ..|..
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQM-VLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH-HhhHh
Confidence 99999999864 2 2678889999987 55543
No 33
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=2.7e-19 Score=178.73 Aligned_cols=256 Identities=16% Similarity=0.104 Sum_probs=200.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
..+..+|..+...|++++|+.+|+++++.. ++
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------~~ 80 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG------------------------------------------------TE 80 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------CS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc------------------------------------------------cc
Confidence 456678888888888999988888887642 22
Q ss_pred C----HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 241 N----AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--------GEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 241 ~----~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
+ ..++..+|.+|...+ ++++|+.+|+++++. ..+.++..+|.+|.. .+++++|+.+|++
T Consensus 81 ~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 151 (411)
T 4a1s_A 81 DLRTLSAIYSQLGNAYFYLG-----DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV----MGRFDEAAICCER 151 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 2 256788888887774 888888888888764 234678888888888 8889999998888
Q ss_pred HHHc--------CCHHHHHHHHHHHHhCCCCCccC-----------------HHHHHHHHHHHHhC----C----ChhHH
Q 009801 309 AARQ--------QLYSAYNGIGYLYVKGYGVEKKN-----------------YTKAKEYFEKAADN----E----EAGGH 355 (525)
Q Consensus 309 a~~~--------~~~~a~~~lg~~~~~g~~~~~~~-----------------~~~A~~~~~~a~~~----~----~~~a~ 355 (525)
+++. ....++..+|.+|.. .++ +++|+.+++++++. + .+.++
T Consensus 152 al~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 226 (411)
T 4a1s_A 152 HLTLARQLGDRLSEGRALYNLGNVYHA-----KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRAC 226 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHH-----HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHH-----cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8765 135578888888876 557 88888888888754 2 34577
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---- 423 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---- 423 (525)
..+|.+|.. .+++++|+.+++++++. ++ ..++.++|.+|.. .+++++|+.+++++++..+
T Consensus 227 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 227 GNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCC
Confidence 889999998 89999999999988865 22 2378888999887 8899999999999886642
Q ss_pred ----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHH
Q 009801 424 ----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----G----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCA 491 (525)
Q Consensus 424 ----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A 491 (525)
..++..+|.++...|++++|+.+++++++. + ...++.++|.++.. .+++++|
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A 362 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA----------------IGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH----------------hccHHHH
Confidence 457778899999999999999999988765 1 24578888888887 6678999
Q ss_pred HHHHHHHHhCC
Q 009801 492 HSLWWQASEQG 502 (525)
Q Consensus 492 ~~~~~~a~~~~ 502 (525)
+.+|+++++..
T Consensus 363 ~~~~~~al~~~ 373 (411)
T 4a1s_A 363 LKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.85 E-value=1.8e-19 Score=169.12 Aligned_cols=236 Identities=18% Similarity=0.189 Sum_probs=201.6
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-----
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----- 313 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----- 313 (525)
+++.++.+|.++... +++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++.+
T Consensus 2 n~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~ 72 (272)
T 3u4t_A 2 NDDVEFRYADFLFKN-----NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE----LAKYDLAQKDIETYFSKVNATKA 72 (272)
T ss_dssp ---CHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH----TTCHHHHHHHHHHHHTTSCTTTC
T ss_pred cHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhccCchhH
Confidence 456788899999888 4999999999999876 567799999999999 999999999999999843
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
...++..+|.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++. .++.
T Consensus 73 ~~~~~~~lg~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~ 143 (272)
T 3u4t_A 73 KSADFEYYGKILMK-----KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRPTTTDPK 143 (272)
T ss_dssp CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCSSCCCHH
T ss_pred HHHHHHHHHHHHHH-----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhcCCCcHH
Confidence 35668999999987 56999999999999875 678899999999999 99999999999999876 6889
Q ss_pred HHHHHH-HHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC----h----
Q 009801 390 AFYQLA-KMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGD---VGKAFLLYSRMAELG----Y---- 455 (525)
Q Consensus 390 a~~~l~-~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~---~~~A~~~~~~a~~~~----~---- 455 (525)
+++++| .+|.. +++++|+..|+++++..| ..+++.+|.++...|+ +++|+..|+++++.. +
T Consensus 144 ~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 144 VFYELGQAYYYN-----KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 999999 77774 499999999999999875 5788899999999998 999999999998762 2
Q ss_pred --HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 456 --EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 456 --~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
..++..+|.++.. .+++++|+.+|+++++.+ ++.+.-.++.+.-
T Consensus 219 ~~~~~~~~l~~~~~~----------------~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 219 ELIEANEYIAYYYTI----------------NRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 2688889999988 778999999999998754 8889888887765
No 35
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.85 E-value=1.4e-19 Score=177.72 Aligned_cols=253 Identities=9% Similarity=-0.029 Sum_probs=212.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHcC-
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERN-YTKALEWLTHAARQQ- 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~-~~~A~~~~~~a~~~~- 313 (525)
+++++.++..+|.++... +++++|+..|+++++. ++..+++.+|.++.. .++ +++|+.+|+++++..
T Consensus 93 ~p~~~~a~~~lg~~~~~~-----g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~----~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRD-----ERSERAFKLTRDAIELNAANYTVWHFRRVLLKS----LQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp CHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCT
T ss_pred ChhhHHHHHHHHHHHHHC-----CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cccCHHHHHHHHHHHHHHCC
Confidence 445688999999999888 4999999999999876 788999999999999 886 999999999999874
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
+..+++++|.++.. .+++++|+.+|+++++. +++.+++++|.++.. .+++++|+.+|+++++. ++.
T Consensus 164 ~~~~a~~~~g~~~~~-----~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEW-----LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp TCHHHHHHHHHHHHH-----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCH
Confidence 89999999999987 57999999999999876 688999999999999 99999999999999987 689
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHH-----HHHHHHHHHcCC--hHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc--ChHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMA-----TALYKLVAERGP--WSSLSRWALESYLKG--DVGKAFLLYSRMAEL--GYEV 457 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A-----~~~~~~a~~~~~--~~a~~~l~~~~~~~g--~~~~A~~~~~~a~~~--~~~~ 457 (525)
.+++++|.++.. ..+..++| +.+|+++++.+| ..+++.+|.++...| ++++|+..++++ +. +++.
T Consensus 235 ~a~~~lg~~l~~---l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~ 310 (382)
T 2h6f_A 235 SVWNQRYFVISN---TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHH---TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH
T ss_pred HHHHHHHHHHHH---hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH
Confidence 999999999987 12333566 699999999975 778999999999988 799999999887 44 5788
Q ss_pred HHHHHHHHHhhhCCCccccCCCCCCCChHh-HHHHHHHHHHH-HhCC--CHHHHHHHHHHHHccccc
Q 009801 458 AQSNAAWILDKYGEGSMCMGESGFCTDAER-HQCAHSLWWQA-SEQG--NEHAALLIGDAYYYGRVR 520 (525)
Q Consensus 458 a~~~la~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a-~~~~--~~~a~~~lg~~y~~g~g~ 520 (525)
++..+|.+|...|+.. . ...++ +++|+.+|+++ ++.+ +...+..++..+..-++.
T Consensus 311 al~~La~~~~~~~~~~-------~-~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~~~~ 369 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQ-------C-DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHST 369 (382)
T ss_dssp HHHHHHHHHHHHHHTT-------C-SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccc-------c-cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhcc
Confidence 9999999998732100 0 01133 69999999999 7766 577888888887754443
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=1.8e-19 Score=163.45 Aligned_cols=192 Identities=19% Similarity=0.152 Sum_probs=158.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L 314 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~ 314 (525)
|.++.+++.+|.++...+ ++++|+..|+++++. +++.+++.+|.++.. .+++++|+.+|+++++.. +
T Consensus 2 p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALG-----RYDAALTLFERALKENPQDPEALYWLARTQLK----LGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCc
Confidence 467788999999998884 999999999999875 688999999999999 999999999999998764 7
Q ss_pred HHHHHHHHHHHHhCCCCCc-----------cCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEK-----------KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~-----------~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
+.++..+|.++.. . |++++|+..|+++++. +++.+++.+|.+|.. .+++++|+..|++
T Consensus 73 ~~a~~~lg~~~~~-----~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 73 LGGYMVLSEAYVA-----LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQ 143 (217)
T ss_dssp HHHHHHHHHHHHH-----HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHH
Confidence 8999999999987 5 7999999999999875 678999999999999 9999999999999
Q ss_pred HHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 382 AANA-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 382 a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
+++. +++.+++++|.++.. .+++++|+.+|+++++.+| +.++..+|.++...|++++|+.+++++-.
T Consensus 144 al~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 144 ALALEDTPEIRSALAELYLS----MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHhcccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9877 688999999999998 9999999999999999875 67888999999999999999999987643
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.84 E-value=2.7e-19 Score=167.90 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
+++++.+|.++...|++++|+..|+++++. .+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------------------------------------~p 34 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK------------------------------------------------KY 34 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT------------------------------------------------TC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------------------------------------CC
Confidence 456677777777788888887777777542 34
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
.++.+++.+|.+|...+ ++++|+.+++++++.. .+.++..+|.+|.. .+++++|+.+|+++++..
T Consensus 35 ~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~ 105 (272)
T 3u4t_A 35 NSPYIYNRRAVCYYELA-----KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK----KGQDSLAIQQYQAAVDRDT 105 (272)
T ss_dssp CCSTTHHHHHHHHHHTT-----CHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHST
T ss_pred CcHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCc
Confidence 56778889999998884 9999999999998842 24568999999999 999999999999998864
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHH-HHHHcCCCCcCCHHHHHHHHHHHHHc--CC
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG-VMYYKGIGVKRDVKLACKYFLVAANA--GH 387 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg-~~y~~g~~~~~~~~~A~~~~~~a~~~--~~ 387 (525)
++.++..+|.++.. .+++++|+.+|+++++. .++.+++.+| .+|.. +++++|+..|+++++. .+
T Consensus 106 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 106 TRLDMYGQIGSYFYN-----KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-----KEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp TCTHHHHHHHHHHHH-----TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSTTC
T ss_pred ccHHHHHHHHHHHHH-----ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCccc
Confidence 78899999999987 56999999999999876 5788999999 77766 4999999999999887 56
Q ss_pred HHHHHHHHHHHHcCCCCcCC---HHHHHHHHHHHHHcC---Ch-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 009801 388 QKAFYQLAKMFHTGVGLKKN---LHMATALYKLVAERG---PW-------SSLSRWALESYLKGDVGKAFLLYSRMAEL- 453 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~---~~~A~~~~~~a~~~~---~~-------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~- 453 (525)
..++..+|.++.. .++ +++|+..|+++++.. +. .++..+|.++...|++++|+.+|+++++.
T Consensus 176 ~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 176 YIGYLWRARANAA----QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHH----HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHH----cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7899999999886 555 888999999998763 22 57788999999999999999999999876
Q ss_pred -ChHHHHHHHHHHHh
Q 009801 454 -GYEVAQSNAAWILD 467 (525)
Q Consensus 454 -~~~~a~~~la~~~~ 467 (525)
+++.+.-.++.+..
T Consensus 252 p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 252 PTNKKAIDGLKMKLE 266 (272)
T ss_dssp TTCHHHHHHHC----
T ss_pred ccHHHHHHHhhhhhc
Confidence 56777777766554
No 38
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=2.9e-19 Score=178.42 Aligned_cols=262 Identities=12% Similarity=0.077 Sum_probs=212.8
Q ss_pred HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC
Q 009801 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (525)
Q Consensus 125 ~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~----~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~ 198 (525)
..++.+|..+.. .+++++|+.+|+++++. ++. .++..+|.+|...|++++|+.+|+++++......
T Consensus 49 ~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---- 120 (411)
T 4a1s_A 49 LELALEGERLCN----AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN---- 120 (411)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc----
Confidence 445667777777 78888888888888764 344 5788999999999999999999998876522110
Q ss_pred CCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--
Q 009801 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-- 276 (525)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-- 276 (525)
..+..+.++..+|.+|...+ ++++|+.+|+++++.
T Consensus 121 --------------------------------------~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~ 157 (411)
T 4a1s_A 121 --------------------------------------DRLGEAKSSGNLGNTLKVMG-----RFDEAAICCERHLTLAR 157 (411)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------CchHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHH
Confidence 01234678889999998884 999999999998865
Q ss_pred ------CCHHHHHHHHHHHHcCCCCCCC-----------------HHHHHHHHHHHHHc----C----CHHHHHHHHHHH
Q 009801 277 ------GEPQSMEFLGEIYARGAGVERN-----------------YTKALEWLTHAARQ----Q----LYSAYNGIGYLY 325 (525)
Q Consensus 277 ------~~~~a~~~Lg~~y~~g~~~~~~-----------------~~~A~~~~~~a~~~----~----~~~a~~~lg~~~ 325 (525)
....++..+|.+|.. .++ +++|+.+++++++. + ...++..+|.++
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 233 (411)
T 4a1s_A 158 QLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTY 233 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234688899999998 889 99999999998764 1 345889999999
Q ss_pred HhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--------CHH
Q 009801 326 VKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--------HQK 389 (525)
Q Consensus 326 ~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~ 389 (525)
.. .+++++|+.+++++++. ++ ..++..+|.+|.. .+++++|+.+|+++++.. ...
T Consensus 234 ~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 234 YL-----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HH-----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87 56999999999999865 22 3388999999999 999999999999998752 167
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
++..+|.++.. .+++++|+.+++++++.. . ..++..+|.++...|++++|+.+++++++..
T Consensus 305 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 305 SCYSLGNTYTL----LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 88999999998 999999999999998763 1 4578899999999999999999999999874
No 39
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=3.7e-20 Score=154.67 Aligned_cols=133 Identities=22% Similarity=0.278 Sum_probs=78.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCC
Q 009801 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 292 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~ 371 (525)
|.|+.+|+++|+.+|+++++.+++.++ ||.+|..| ...++|+++|+++++.+++.++++||.+|..|.++.+|
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g-----~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ-----INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTT-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCC
T ss_pred CcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCcc
Confidence 445555566666666666665555555 66555542 23444666666666666666666666666666555666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009801 372 VKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWA 431 (525)
Q Consensus 372 ~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 431 (525)
+++|+.||++|++.+++.++++||.+|..|.|+.+|+++|+.||++|++.+++.++.+|+
T Consensus 77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~ 136 (138)
T 1klx_A 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 666666666666666666666666666666666666666666666666666655555544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=3.7e-19 Score=161.35 Aligned_cols=190 Identities=16% Similarity=-0.029 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
.++.+++.+|.++.. .+++++|+..|+++++.. ++.+++.+|.++.. .|++++|+.+|+++++. +++
T Consensus 3 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYA----LGRYDAALTLFERALKENPQDPEALYWLARTQLK-----LGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcH
Confidence 467889999999999 999999999999999864 89999999999987 67999999999999876 678
Q ss_pred hHHHHHHHHHHcCCCCc-----------CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 353 GGHYNLGVMYYKGIGVK-----------RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~-----------~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
.+++.+|.++.. . +++++|+..|+++++. +++.++..+|.++.. .+++++|+.+|++++
T Consensus 74 ~a~~~lg~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 74 GGYMVLSEAYVA----LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQAL 145 (217)
T ss_dssp HHHHHHHHHHHH----HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Confidence 899999999999 9 9999999999999987 689999999999998 999999999999998
Q ss_pred HcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHH
Q 009801 420 ERG-PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW 496 (525)
Q Consensus 420 ~~~-~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 496 (525)
+.+ ++.+++.+|.++...|++++|+.+|+++++. +++.++.++|.++.. .+++++|+.+|+
T Consensus 146 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----------------~g~~~~A~~~~~ 209 (217)
T 2pl2_A 146 ALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL----------------KGKAEEAARAAA 209 (217)
T ss_dssp HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------------------
T ss_pred hcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----------------ccCHHHHHHHHH
Confidence 775 6788999999999999999999999999886 688999999999987 778999999998
Q ss_pred HHH
Q 009801 497 QAS 499 (525)
Q Consensus 497 ~a~ 499 (525)
++-
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 764
No 41
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=8e-20 Score=152.64 Aligned_cols=133 Identities=27% Similarity=0.360 Sum_probs=119.9
Q ss_pred CCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCH
Q 009801 257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNY 336 (525)
Q Consensus 257 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~ 336 (525)
.++++|+++|+.||+++++.+++.++ ||.+|.. ....++|+.||+++++.+++.++++||.+|..|.++.+ |+
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~----g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~-d~ 77 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNS----QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK-DL 77 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCT----TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC-CH
T ss_pred cCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHc----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCc-cH
Confidence 57788999999999999999999888 9999998 45667799999999999999999999999999988766 99
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009801 337 TKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK 396 (525)
Q Consensus 337 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 396 (525)
++|+.||++|++.+++.++++||.+|..|.++.+|+++|+.||++|++.+++.++.+|+.
T Consensus 78 ~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 78 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999888765
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.1e-18 Score=160.04 Aligned_cols=216 Identities=18% Similarity=0.115 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C----
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L---- 314 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---- 314 (525)
+.++..+|.++...+ ++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+++++++.. +
T Consensus 5 a~~~~~~g~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKAR-----QFDEAIEHYNKAWELHKDITYLNNRAAAEYE----KGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSCCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccccch
Confidence 456777777777663 777777777777654 456677777777777 777777777777777642 2
Q ss_pred ---HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 315 ---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 315 ---~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
+.++..+|.++.. .+++++|+.+|+++++.... +.++.. .+++++|+..+++++.. .++.
T Consensus 76 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~~~------~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 140 (258)
T 3uq3_A 76 KVISKSFARIGNAYHK-----LGDLKKTIEYYQKSLTEHRT------ADILTK----LRNAEKELKKAEAEAYVNPEKAE 140 (258)
T ss_dssp HHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCCC------HHHHHH----HHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHhcCch------hHHHHH----HhHHHHHHHHHHHHHHcCcchHH
Confidence 5677777777765 45777777777777765432 345666 66777777777777765 3456
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
++..+|.++.. .+++++|+.+|+++++..+ +.++..+|.++...|++++|+.+++++++. .++.++.++|.+
T Consensus 141 ~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 141 EARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 77777777776 7777777777777777653 556677777777777777777777777765 456777777777
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
+.. .+++++|+.+|+++++.
T Consensus 217 ~~~----------------~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 217 QIA----------------VKEYASALETLDAARTK 236 (258)
T ss_dssp HHH----------------TTCHHHHHHHHHHHHHH
T ss_pred HHH----------------HhhHHHHHHHHHHHHHh
Confidence 776 55677777777777654
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.2e-18 Score=159.92 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
..++..+|..+...+++++|+.+|+++++. .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------------------------------------~- 35 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL------------------------------------------------H- 35 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------S-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------------------------------------h-
Confidence 467788888888888888888888887653 2
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE-------PQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~-------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
.++.+++.+|.+|...+ ++++|+.+++++++. .+ +.++..+|.+|.. .+++++|+.+|++++
T Consensus 36 ~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKG-----EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK----LGDLKKTIEYYQKSL 106 (258)
T ss_dssp CCTHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHH
Confidence 56788999999998884 999999999999875 22 6899999999999 999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C
Q 009801 311 RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G 386 (525)
Q Consensus 311 ~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~ 386 (525)
+.... +.++.. .+++++|+..+++++... ++.++..+|.++.. .+++++|+.+|+++++. .
T Consensus 107 ~~~~~------~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~ 171 (258)
T 3uq3_A 107 TEHRT------ADILTK-----LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPE 171 (258)
T ss_dssp HHCCC------HHHHHH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred hcCch------hHHHHH-----HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcc
Confidence 87532 233433 348899999999998874 67789999999999 99999999999999987 5
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
++.++..+|.++.. .+++++|+.+++++++..+ +.++..+|.++...|++++|+.+++++++..
T Consensus 172 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 172 DARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 78999999999998 9999999999999999864 6788999999999999999999999998764
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.83 E-value=7.3e-19 Score=172.60 Aligned_cols=241 Identities=11% Similarity=0.034 Sum_probs=199.3
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH
Q 009801 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (525)
Q Consensus 158 ~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 237 (525)
++..++..+|.++...+++++|+..|+++++ .
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~------------------------------------------------l 126 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------------------------------------L 126 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------------------------------------H
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------------------------------------h
Confidence 3567778888888888889999988888865 4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-- 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-- 313 (525)
+++++.+++.+|.++...+ .++++|+.+|++++.. +++.+++++|.++.. .+++++|+..|+++++.+
T Consensus 127 ~P~~~~a~~~~g~~l~~~g----~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~----~g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLKSLQ----KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW----LRDPSQELEFIADILNQDAK 198 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTT
T ss_pred CccCHHHHHHHHHHHHHcc----cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcc
Confidence 6678899999999998874 2399999999999875 688999999999999 999999999999999874
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCH-HHH-----HHHHHHHHHc
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDV-KLA-----CKYFLVAANA 385 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~-~~A-----~~~~~~a~~~ 385 (525)
+..+++++|.++.. .+++++|+.+|+++++. +++.+++++|.++.. .+.. ++| +.+|+++++.
T Consensus 199 ~~~a~~~lg~~~~~-----~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~----l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 199 NYHAWQHRQWVIQE-----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN----TTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp CHHHHHHHHHHHHH-----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCSCSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCcchHHHHHHHHHHHHHHHHH
Confidence 89999999999987 56899999999999876 588999999999988 4443 566 6899999877
Q ss_pred --CCHHHHHHHHHHHHcCCCCcC--CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcC--------C-HHHHHHHHHHH
Q 009801 386 --GHQKAFYQLAKMFHTGVGLKK--NLHMATALYKLVAERG--PWSSLSRWALESYLKG--------D-VGKAFLLYSRM 450 (525)
Q Consensus 386 --~~~~a~~~l~~~y~~g~g~~~--~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g--------~-~~~A~~~~~~a 450 (525)
++..++++++.++.. .+ ++++|++.++++ +.+ ...++..+|.++..+| + +++|+.+|+++
T Consensus 270 ~P~~~~a~~~l~~ll~~----~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 270 VPHNESAWNYLKGILQD----RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp STTCHHHHHHHHHHHTT----TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc----cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 688999999999986 44 789999999887 555 3667889999998874 3 58999999999
Q ss_pred -HHcC--hHHHHHHHHHHHhh
Q 009801 451 -AELG--YEVAQSNAAWILDK 468 (525)
Q Consensus 451 -~~~~--~~~a~~~la~~~~~ 468 (525)
++.+ ....+..++..+..
T Consensus 345 ~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 345 AKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHH
Confidence 6664 45566677766644
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.82 E-value=2.2e-18 Score=166.16 Aligned_cols=256 Identities=15% Similarity=0.103 Sum_probs=206.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
..++..|..+...|++++|+.+|+++++.. ++
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------~~ 37 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG------------------------------------------------TE 37 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------CS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC------------------------------------------------cc
Confidence 345667788888888888888888776531 22
Q ss_pred C----HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 241 N----AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--------GEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 241 ~----~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
+ +.++..+|.+|...+ ++++|+.+++++++. ..+.++..+|.+|.. .+++++|+.++++
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 108 (338)
T 3ro2_A 38 DLKTLSAIYSQLGNAYFYLH-----DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV----LGNFDEAIVCCQR 108 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH----ccCHHHHHHHHHH
Confidence 2 467788999998884 999999999998764 225688889999998 9999999999999
Q ss_pred HHHc----CC----HHHHHHHHHHHHhCCCCCccC--------------------HHHHHHHHHHHHhC----C----Ch
Q 009801 309 AARQ----QL----YSAYNGIGYLYVKGYGVEKKN--------------------YTKAKEYFEKAADN----E----EA 352 (525)
Q Consensus 309 a~~~----~~----~~a~~~lg~~~~~g~~~~~~~--------------------~~~A~~~~~~a~~~----~----~~ 352 (525)
+++. ++ ..++..+|.++.. .++ +++|+.+++++++. + .+
T Consensus 109 al~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 183 (338)
T 3ro2_A 109 HLDISRELNDKVGEARALYNLGNVYHA-----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-----HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHH-----cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 8764 22 4588899999876 557 89999999988754 2 24
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-- 422 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 422 (525)
.++..+|.+|.. .+++++|+.+++++++. ++ ..++..+|.++.. .+++++|+.+++++++..
T Consensus 184 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 184 RAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHh
Confidence 578899999999 99999999999999865 22 3488899999997 899999999999998663
Q ss_pred --C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----Ch----HHHHHHHHHHHhhhCCCccccCCCCCCCChHhH
Q 009801 423 --P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GY----EVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488 (525)
Q Consensus 423 --~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~----~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (525)
+ ..++..+|.++...|++++|+.+++++++. ++ ..++..+|.++.. .+++
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~ 319 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----------------LGNH 319 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------HTCH
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----------------cCCh
Confidence 2 457789999999999999999999999865 22 4578889999988 7789
Q ss_pred HHHHHHHHHHHhCC
Q 009801 489 QCAHSLWWQASEQG 502 (525)
Q Consensus 489 ~~A~~~~~~a~~~~ 502 (525)
++|+.+|+++++..
T Consensus 320 ~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 320 DQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.82 E-value=4.7e-18 Score=163.89 Aligned_cols=261 Identities=13% Similarity=0.066 Sum_probs=211.3
Q ss_pred HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CC----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC
Q 009801 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (525)
Q Consensus 125 ~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~----~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~ 198 (525)
..++..|..+.. .+++++|+.+|+++++. ++ ..++..+|.++...|++++|+.+++++++......
T Consensus 6 ~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---- 77 (338)
T 3ro2_A 6 LELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG---- 77 (338)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc----
Confidence 456777888887 88999999999998764 44 46788999999999999999999998876532210
Q ss_pred CCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--
Q 009801 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-- 276 (525)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-- 276 (525)
..+..+.++..+|.+|...+ ++++|+.+++++++.
T Consensus 78 --------------------------------------~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 78 --------------------------------------DQLGEAKASGNLGNTLKVLG-----NFDEAIVCCQRHLDISR 114 (338)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------ccHHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHHHH
Confidence 01123567888999998874 999999999998764
Q ss_pred --CC----HHHHHHHHHHHHcCCCCCCC--------------------HHHHHHHHHHHHHc----C----CHHHHHHHH
Q 009801 277 --GE----PQSMEFLGEIYARGAGVERN--------------------YTKALEWLTHAARQ----Q----LYSAYNGIG 322 (525)
Q Consensus 277 --~~----~~a~~~Lg~~y~~g~~~~~~--------------------~~~A~~~~~~a~~~----~----~~~a~~~lg 322 (525)
++ ..++..+|.+|.. .++ +++|+.+++++++. + ...++..+|
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 115 ELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLG 190 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33 3488889999988 888 99999999988754 2 345788899
Q ss_pred HHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC---
Q 009801 323 YLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH--- 387 (525)
Q Consensus 323 ~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~--- 387 (525)
.++.. .+++++|+.+++++++. ++ +.++..+|.+|.. .+++++|+.+++++++. ++
T Consensus 191 ~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (338)
T 3ro2_A 191 NTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDRAV 261 (338)
T ss_dssp HHHHH-----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHH-----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhcchhH
Confidence 99886 66999999999999865 22 3488999999999 99999999999999865 22
Q ss_pred -HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 388 -QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 388 -~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..++..+|.++.. .+++++|+.+++++++.. + ..++..+|.++...|++++|+.+++++++.
T Consensus 262 ~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 262 EAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6688899999998 999999999999998763 2 447789999999999999999999999876
No 47
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=6.4e-18 Score=160.29 Aligned_cols=267 Identities=11% Similarity=0.045 Sum_probs=182.3
Q ss_pred hHhHHHHHHHHHHHHh--cCC-hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHH
Q 009801 105 VRVMEEATSEVESAAM--EGD-PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVK 181 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~-~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~ 181 (525)
.|++++|+.++++... |.+ .++...++..|.. .++++.|+.-++.. ...+..++..++..+...++.++|++
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~----~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA----QRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH----TTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH----CCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 4556666666655321 222 2444555666665 55666666555442 22234455555555555555555555
Q ss_pred HHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 009801 182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRR 261 (525)
Q Consensus 182 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~ 261 (525)
.+++++.. ...|+++.+++.+|.++...|
T Consensus 87 ~l~~ll~~----------------------------------------------~~~P~~~~~~~~la~~~~~~g----- 115 (291)
T 3mkr_A 87 ELDREMSR----------------------------------------------SVDVTNTTFLLMAASIYFYDQ----- 115 (291)
T ss_dssp HHHHHHHS----------------------------------------------CCCCSCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHhc----------------------------------------------ccCCCCHHHHHHHHHHHHHCC-----
Confidence 55544220 013678899999999998884
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 009801 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKE 341 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~ 341 (525)
++++|+.+|++ .+++.++..+|.+|.. .|++++|+..|+++++.........++..+..- ....+++++|+.
T Consensus 116 ~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-~~~~~~~~eA~~ 187 (291)
T 3mkr_A 116 NPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLARKELKKMQDQDEDATLTQLATAWVSL-AAGGEKLQDAYY 187 (291)
T ss_dssp CHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHCTTHHHHHHH
T ss_pred CHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhCchHHHHHHH
Confidence 99999999998 7888999999999998 999999999999998875333344444322110 001358999999
Q ss_pred HHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHH-HHHHHH
Q 009801 342 YFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM-ATALYK 416 (525)
Q Consensus 342 ~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~-A~~~~~ 416 (525)
.|+++++. +++.+++.+|.++.. .+++++|...|+++++. +++.+++++|.++.. .|+.++ +..+++
T Consensus 188 ~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~----~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 188 IFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH----LGKPPEVTNRYLS 259 (291)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHH
Confidence 99999875 578889999999999 99999999999999876 688999999998887 666654 678999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCHHHHHH
Q 009801 417 LVAERGPWSSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 417 ~a~~~~~~~a~~~l~~~~~~~g~~~~A~~ 445 (525)
++++.+|..+... ......+.++++..
T Consensus 260 ~~~~~~P~~~~~~--d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 260 QLKDAHRSHPFIK--EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHCTTCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHH--HHHHHHHHHHHHHH
Confidence 9999987655432 22333344444443
No 48
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=4.5e-16 Score=167.86 Aligned_cols=322 Identities=10% Similarity=0.021 Sum_probs=219.6
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH-hc----CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-ME----GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~----~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
.+|+-.-.....++. .+++.+|+..|+++. ++ .+...+..|...... -|..+..++..+.-..
T Consensus 983 ~~PeeVs~~vKaf~~-------aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk-----aD~~Rv~eyI~kLd~~ 1050 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMT-------ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK-----ADRTRVMEYINRLDNY 1050 (1630)
T ss_pred cCHHHhHHHHHHHHh-------CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH-----hChhhHHHHHHHhhhc
Confidence 344444555566664 677889999999876 22 234455555544332 2555555555554322
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH
Q 009801 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (525)
Q Consensus 158 ~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 237 (525)
. .-.+|.++...+.+++|..+|+++... ......++...+++++|+++.++.
T Consensus 1051 d----~~eIA~Iai~lglyEEAf~IYkKa~~~-----------------------~~A~~VLie~i~nldrAiE~Aerv- 1102 (1630)
T 1xi4_A 1051 D----APDIANIAISNELFEEAFAIFRKFDVN-----------------------TSAVQVLIEHIGNLDRAYEFAERC- 1102 (1630)
T ss_pred c----HHHHHHHHHhCCCHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHhhHHHHHHHHHhc-
Confidence 2 234889999999999999999987321 111333445777888888887754
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYS 316 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~ 316 (525)
..+.+++.+|..+...| ++++|+..|.+| +++.++.++|.++.. .+++++|+++|..|.+.. .+.
T Consensus 1103 --n~p~vWsqLAKAql~~G-----~~kEAIdsYiKA---dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~~e~~ 1168 (1630)
T 1xi4_A 1103 --NEPAVWSQLAKAQLQKG-----MVKEAIDSYIKA---DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESY 1168 (1630)
T ss_pred --CCHHHHHHHHHHHHhCC-----CHHHHHHHHHhc---CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccccc
Confidence 67899999999998884 999999999876 888999999999998 899999999999987664 333
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK 396 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 396 (525)
+...+|..|.. .+++++ ++.| ++..+...+..+|..+.. .+++++|..+|.++ ..+..++.
T Consensus 1169 Idt~LafaYAK-----l~rlee-le~f---I~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~ 1229 (1630)
T 1xi4_A 1169 VETELIFALAK-----TNRLAE-LEEF---INGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLAS 1229 (1630)
T ss_pred ccHHHHHHHHh-----hcCHHH-HHHH---HhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHH
Confidence 45568888876 346654 3333 344566677789999988 89999999999885 46778888
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCcccc
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCM 476 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~ 476 (525)
++.. .+++++|++.+++| ++..+|...+.++...|+++.|..+... +. .+++-...++..|..
T Consensus 1230 tLvk----Lge~q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii-v~~deLeeli~yYe~-------- 1292 (1630)
T 1xi4_A 1230 TLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-VHADELEELINYYQD-------- 1292 (1630)
T ss_pred HHHH----hCCHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh-cCHHHHHHHHHHHHH--------
Confidence 8887 78899999988887 4456666666666666666666655542 11 133344455555555
Q ss_pred CCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 477 GESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 477 ~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.+.+++|+.++++++..+
T Consensus 1293 --------~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1293 --------RGYFEELITMLEAALGLE 1310 (1630)
T ss_pred --------cCCHHHHHHHHHHHhccC
Confidence 445666666666665544
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.79 E-value=1.5e-17 Score=146.40 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChh
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG 353 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~ 353 (525)
++.++++||.+|.. .|++++|+.+|+++++.. ++.++..+|.+|.. .+++++|+..+++++.. .++.
T Consensus 4 ~~~iy~~lG~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-----IGLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCchhHH
Confidence 56788999999999 999999999999998764 88999999999987 56999999999998765 5788
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (525)
++..+|.++.. .+++++|...++++... .+..++..+|.+|.. .+++++|+..|+++++.+| +.++++
T Consensus 75 ~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 75 AYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 88999999999 99999999999999876 678899999999998 8999999999999998874 678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHH
Q 009801 430 WALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAW 464 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~ 464 (525)
+|.++..+|++++|+.+|++|++.++..+.+++|.
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~lal 181 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELAL 181 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHHHh
Confidence 99999999999999999999999987777766653
No 50
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=2.5e-17 Score=163.05 Aligned_cols=220 Identities=15% Similarity=0.142 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--- 312 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 312 (525)
.++.+|.++... +++++|+.+|+++++. + .+.+++.+|.+|.. .+++++|+.++++|++.
T Consensus 105 ~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 105 FNFFRGMYELDQ-----REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHh
Confidence 445589999888 4999999999999875 3 35789999999999 99999999999999864
Q ss_pred -C-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 313 -Q-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKY 378 (525)
Q Consensus 313 -~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~ 378 (525)
+ .+.++..+|.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|.. .+++++|+.+
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~ 246 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLD-----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPY 246 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 1 35688999999987 67999999999999865 22 3488999999999 9999999999
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----Ch---HHHHHHHHHHHhcCC---H
Q 009801 379 FLVAANA--------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----PW---SSLSRWALESYLKGD---V 440 (525)
Q Consensus 379 ~~~a~~~--------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~---~a~~~l~~~~~~~g~---~ 440 (525)
|+++++. ..+.++.++|.+|.. .+++++|+.+++++++.. ++ ..+..+|.++...|+ +
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999982 346789999999998 999999999999998763 22 234678999999999 8
Q ss_pred HHHHHHHHHHHHc-ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 441 GKAFLLYSRMAEL-GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 441 ~~A~~~~~~a~~~-~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
++|+.++++.-.. ....++.++|.+|.. .+++++|+.+|+++++.
T Consensus 323 ~~al~~~~~~~~~~~~~~~~~~la~~y~~----------------~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 323 QGFFDFLESKMLYADLEDFAIDVAKYYHE----------------RKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHH
Confidence 8888888877322 345578899999998 77899999999999863
No 51
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=7.3e-17 Score=152.99 Aligned_cols=238 Identities=11% Similarity=0.044 Sum_probs=196.1
Q ss_pred cCCHHHHHHHHHHHHcCC--C-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhh
Q 009801 141 ERNKGKAFLYHHFAAEGG--N-IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~--~-~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (525)
.|++.+|+.+.++..... + .++...++..|...|++++|+..++..
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------------------------------- 60 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------------------------------- 60 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-------------------------------
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-------------------------------
Confidence 578999999988765543 2 356678888888888888887654320
Q ss_pred HhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCC
Q 009801 218 ALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----KGEPQSMEFLGEIYARGA 293 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~ 293 (525)
.+....++..++..+... ++.++|++.+++.+. ++++.+++.+|.+|..
T Consensus 61 --------------------~~~~~~a~~~la~~~~~~-----~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~-- 113 (291)
T 3mkr_A 61 --------------------SAPELQAVRMFAEYLASH-----SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY-- 113 (291)
T ss_dssp --------------------SCHHHHHHHHHHHHHHCS-----TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH--
T ss_pred --------------------CChhHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH--
Confidence 122356777888888766 489999999999875 4578999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHH----HHHcCCCCc
Q 009801 294 GVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGV----MYYKGIGVK 369 (525)
Q Consensus 294 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~----~y~~g~~~~ 369 (525)
.|++++|+.+|++ .++++++..+|.++.. .|++++|++.|+++++.+.......++. ++.. .
T Consensus 114 --~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~-----~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~----~ 179 (291)
T 3mkr_A 114 --DQNPDAALRTLHQ---GDSLECMAMTVQILLK-----LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG----G 179 (291)
T ss_dssp --TTCHHHHHHHHTT---CCSHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC----T
T ss_pred --CCCHHHHHHHHhC---CCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC----c
Confidence 9999999999999 6789999999999987 6799999999999998754444444443 3334 5
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHH-HH
Q 009801 370 RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGK-AF 444 (525)
Q Consensus 370 ~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~-A~ 444 (525)
+++++|+..|+++++. +++.+++.+|.++.. .+++++|+..|+++++.+| +.++.++|.++...|+..+ +.
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~ 255 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 8999999999999986 688999999999998 9999999999999999874 7789999999999999976 56
Q ss_pred HHHHHHHHcC
Q 009801 445 LLYSRMAELG 454 (525)
Q Consensus 445 ~~~~~a~~~~ 454 (525)
.+++++++..
T Consensus 256 ~~~~~~~~~~ 265 (291)
T 3mkr_A 256 RYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 8999998774
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=8.8e-18 Score=157.64 Aligned_cols=235 Identities=11% Similarity=-0.003 Sum_probs=178.2
Q ss_pred cCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchh
Q 009801 141 ERNKGKAFLYHHFAAEG------GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE 214 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~------~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (525)
.+++++|+.+|+++++. ++..+++.+|.++...|++++|+..|+++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------------------------- 71 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA-------------------------- 71 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--------------------------
Confidence 67888888888888774 2467788888888888888888888887755
Q ss_pred hhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcC
Q 009801 215 NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARG 292 (525)
Q Consensus 215 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g 292 (525)
..+.++.++..+|.+|...+ ++++|+.+|+++++. +++.++..+|.+|..
T Consensus 72 ----------------------~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~- 123 (275)
T 1xnf_A 72 ----------------------IRPDMPEVFNYLGIYLTQAG-----NFDAAYEAFDSVLELDPTYNYAHLNRGIALYY- 123 (275)
T ss_dssp ----------------------HCCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-
T ss_pred ----------------------cCCCcHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-
Confidence 24566788888888888774 889999999988874 567888899999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHcCCCCc
Q 009801 293 AGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVK 369 (525)
Q Consensus 293 ~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~~~~ 369 (525)
.+++++|+.+|+++++.. +......++..+. .+++++|+.++++++... +......++.++.. .
T Consensus 124 ---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 190 (275)
T 1xnf_A 124 ---GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ------KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG----N 190 (275)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT----S
T ss_pred ---hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH------hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH----h
Confidence 889999999999988764 4545555554433 358999999998887652 22233457777777 7
Q ss_pred CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHH
Q 009801 370 RDVKLACKYFLVAANAGH------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 370 ~~~~~A~~~~~~a~~~~~------~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A 443 (525)
++.++|+..++++++... +.++..+|.+|.. .+++++|+.+|+++++.+|.. ....+.++...|++++|
T Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS----LGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQD 265 (275)
T ss_dssp SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhh
Confidence 788899999988876532 6788999999998 899999999999999887643 23447778888999999
Q ss_pred HHHH
Q 009801 444 FLLY 447 (525)
Q Consensus 444 ~~~~ 447 (525)
+..+
T Consensus 266 ~~~~ 269 (275)
T 1xnf_A 266 QDDL 269 (275)
T ss_dssp ----
T ss_pred HHHH
Confidence 8877
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.78 E-value=2.5e-17 Score=144.92 Aligned_cols=170 Identities=15% Similarity=0.103 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
++..+++||.+|.. .|++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+..++++... .++.
T Consensus 4 ~~~iy~~lG~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT-----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD----IGLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp CHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCchhHH
Confidence 67889999999987 77999999999999876 688999999999999 99999999999999876 6889
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
++..+|.++.. .++++.|+..+.++++..+ ..++..+|.++..+|++++|+..|+++++. .++.+++++|.+
T Consensus 75 ~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 75 AYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 99999999998 8999999999999998874 778899999999999999999999999986 588999999999
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGD 512 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 512 (525)
|.. .+++++|+.+|++|++.+...+.++||.
T Consensus 151 ~~~----------------~g~~~~A~~~~~~al~~~p~~a~~~lal 181 (184)
T 3vtx_A 151 YEG----------------KGLRDEAVKYFKKALEKEEKKAKYELAL 181 (184)
T ss_dssp HHH----------------TTCHHHHHHHHHHHHHTTHHHHHHCSCC
T ss_pred HHH----------------CCCHHHHHHHHHHHHhCCccCHHHHHHh
Confidence 998 7789999999999999987777776664
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.76 E-value=2.7e-17 Score=154.32 Aligned_cols=237 Identities=13% Similarity=0.021 Sum_probs=191.0
Q ss_pred hhhccCCcHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009801 219 LRKSRGEDDEAFQILEYQAQK------GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYA 290 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~~~------~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 290 (525)
+....+++++|++.++++++. .++.+++.+|.++...+ ++++|+.+|+++++. .++.++..+|.+|.
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG-----LRALARNDFSQALAIRPDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 445668899999999999863 56889999999999884 999999999999875 57899999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCC
Q 009801 291 RGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGI 366 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~ 366 (525)
. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++.. ++.....++.. ..
T Consensus 89 ~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~-- 156 (275)
T 1xnf_A 89 Q----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ-- 156 (275)
T ss_dssp H----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH--
T ss_pred H----ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH--
Confidence 9 999999999999999864 78999999999987 679999999999998763 44444555444 55
Q ss_pred CCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCC
Q 009801 367 GVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------WSSLSRWALESYLKGD 439 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~l~~~~~~~g~ 439 (525)
.+++++|+..+++++... +......++.++.. .++.++|+..++++++..+ ..++..+|.++...|+
T Consensus 157 --~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 157 --KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG----NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp --HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT----SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH----hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 789999999999988762 22233446666665 7788999999999987764 5788899999999999
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHH
Q 009801 440 VGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLW 495 (525)
Q Consensus 440 ~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 495 (525)
+++|+.+|+++++..+.. ....+.++.. .+++++|+..|
T Consensus 231 ~~~A~~~~~~al~~~p~~-~~~~~~~~~~----------------l~~~~~a~~~~ 269 (275)
T 1xnf_A 231 LDSATALFKLAVANNVHN-FVEHRYALLE----------------LSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCCTT-CHHHHHHHHH----------------HHHHHHC----
T ss_pred HHHHHHHHHHHHhCCchh-HHHHHHHHHH----------------HHHHHhhHHHH
Confidence 999999999999874321 3344666666 77888888876
No 55
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.75 E-value=1.4e-16 Score=157.59 Aligned_cols=164 Identities=15% Similarity=0.061 Sum_probs=119.7
Q ss_pred HHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc
Q 009801 126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----G----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (525)
Q Consensus 126 a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~----~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~ 197 (525)
.++.+|.++.. .+++++|+.+|++|++. + ...+++.+|.+|...|++++|+.+++++++..+...
T Consensus 105 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--- 177 (383)
T 3ulq_A 105 FNFFRGMYELD----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE--- 177 (383)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS---
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc---
Confidence 34558999988 89999999999999874 3 347899999999999999999999999987643321
Q ss_pred CCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-
Q 009801 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK- 276 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~- 276 (525)
+ ..+..+.++..+|.+|...+ ++++|+.+|+++++.
T Consensus 178 ---------------------------~-----------~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 178 ---------------------------A-----------YNIRLLQCHSLFATNFLDLK-----QYEDAISHFQKAYSMA 214 (383)
T ss_dssp ---------------------------T-----------THHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHH
T ss_pred ---------------------------c-----------chHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHH
Confidence 0 01123567888999998874 899999999998864
Q ss_pred ---CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 009801 277 ---GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--------QLYSAYNGIGYLYVKGYGVEKKNYTKAKE 341 (525)
Q Consensus 277 ---~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~g~~~~~~~~~~A~~ 341 (525)
++ +.++.++|.+|.. .+++++|+.+|+++++. ..+.++.++|.+|.. .|++++|+.
T Consensus 215 ~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~ 285 (383)
T 3ulq_A 215 EAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK-----LGKIDKAHE 285 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH-----CCCHHHHHH
Confidence 22 2477778888887 78888888888887762 234455666666654 346666666
Q ss_pred HHHHHHh
Q 009801 342 YFEKAAD 348 (525)
Q Consensus 342 ~~~~a~~ 348 (525)
+++++++
T Consensus 286 ~~~~al~ 292 (383)
T 3ulq_A 286 YHSKGMA 292 (383)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.75 E-value=1.6e-16 Score=161.46 Aligned_cols=203 Identities=19% Similarity=0.181 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCH
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNY-TKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNY 336 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~-~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~ 336 (525)
..++++..+++.... .++.+++.+|.+|.. .+++ ++|+.+|+++++.. ++.++..+|.+|.. .+++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-----~g~~ 153 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNV----TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK-----KGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTS----SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHh----ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----cCCH
Confidence 456666677665543 567888888888888 8888 88888888887764 68888888888876 5688
Q ss_pred HHHHHHHHHHHhCC-ChhHHHHHHHHHHcCCCCc---------CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Q 009801 337 TKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVK---------RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGL 404 (525)
Q Consensus 337 ~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~~~~---------~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~ 404 (525)
++|+.+|+++++.+ ++.++..+|.+|.. . +++++|+.+|+++++. +++.+++++|.+|..
T Consensus 154 ~~A~~~~~~al~~~p~~~~~~~lg~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 225 (474)
T 4abn_A 154 TSAHTCFSGALTHCKNKVSLQNLSMVLRQ----LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS---- 225 (474)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTT----CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHH----hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Confidence 88888888888763 46778888888888 7 8888899888888876 578888888888876
Q ss_pred c--------CCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhh
Q 009801 405 K--------KNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 405 ~--------~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
. +++++|+.+|+++++.++ +.+++++|.++...|++++|+.+|+++++. +++.++.+++.++..
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~- 304 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF- 304 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 5 889999999999988754 567888999999999999999999998876 577888889988887
Q ss_pred CCCccccCCCCCCCChHhHHHHHHHHHH
Q 009801 470 GEGSMCMGESGFCTDAERHQCAHSLWWQ 497 (525)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 497 (525)
.+++++|+..+.+
T Consensus 305 ---------------lg~~~eAi~~~~~ 317 (474)
T 4abn_A 305 ---------------LSRLTSLLESKGK 317 (474)
T ss_dssp ---------------HHHHHHHHHHTTT
T ss_pred ---------------HHHHHHHHHHhcc
Confidence 7788888876653
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=2.6e-15 Score=162.07 Aligned_cols=356 Identities=11% Similarity=0.019 Sum_probs=268.6
Q ss_pred ccCCCCCCCccccCCC-CCC----CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC
Q 009801 65 ENLDPGSWSPVFEPSI-DPG----AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMM 139 (525)
Q Consensus 65 ~~~~~~~a~~~~~~~~-~~~----~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g 139 (525)
..+.|..++.+++++. ++. |......+.+..+. -|..+...+..+.-+.. .-.+|.++..
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk--------aD~~Rv~eyI~kLd~~d----~~eIA~Iai~--- 1061 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK--------ADRTRVMEYINRLDNYD----APDIANIAIS--- 1061 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH--------hChhhHHHHHHHhhhcc----HHHHHHHHHh---
Confidence 4466778888888873 222 23344444443332 13344444444432111 2338898888
Q ss_pred ccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 140 RERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 140 ~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
.+.+++|...|+++-. +..| +..++...+++++|+++++++.. ...+.+++..
T Consensus 1062 -lglyEEAf~IYkKa~~--~~~A---~~VLie~i~nldrAiE~Aervn~---------------------p~vWsqLAKA 1114 (1630)
T 1xi4_A 1062 -NELFEEAFAIFRKFDV--NTSA---VQVLIEHIGNLDRAYEFAERCNE---------------------PAVWSQLAKA 1114 (1630)
T ss_pred -CCCHHHHHHHHHHcCC--HHHH---HHHHHHHHhhHHHHHHHHHhcCC---------------------HHHHHHHHHH
Confidence 8999999999999842 2222 33445578899999999887622 2446789999
Q ss_pred hhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-EPQSMEFLGEIYARGAGVERN 298 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~~~~~~ 298 (525)
+...|++++|+..|.++ ++++++..+|.++.+.+ ++++|+++|++|.+.. .+.+-..+|..|.+ .++
T Consensus 1115 ql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lG-----kyEEAIeyL~mArk~~~e~~Idt~LafaYAK----l~r 1182 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSG-----NWEELVKYLQMARKKARESYVETELIFALAK----TNR 1182 (1630)
T ss_pred HHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcccccccHHHHHHHHh----hcC
Confidence 99999999999999775 89999999999998884 9999999999998764 33455679999998 777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 299 YTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKY 378 (525)
Q Consensus 299 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~ 378 (525)
+++ ++.| +...+...+..+|..++. .+++++|+.+|.++ ..+..+|.+|.. .+++++|+..
T Consensus 1183 lee-le~f---I~~~n~ad~~~iGd~le~-----eg~YeeA~~~Y~kA------~ny~rLA~tLvk----Lge~q~AIEa 1243 (1630)
T 1xi4_A 1183 LAE-LEEF---INGPNNAHIQQVGDRCYD-----EKMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDG 1243 (1630)
T ss_pred HHH-HHHH---HhCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHhh------hHHHHHHHHHHH----hCCHHHHHHH
Confidence 774 3333 455577788899999987 67999999999996 588999999999 9999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hH
Q 009801 379 FLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG--YE 456 (525)
Q Consensus 379 ~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~ 456 (525)
+++| ++..+|...+.++.. .+++..|..+... +. .+++.+..++..|...|.+++|+.++++++..+ +.
T Consensus 1244 arKA---~n~~aWkev~~acve----~~Ef~LA~~cgl~-Ii-v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1244 ARKA---NSTRTWKEVCFACVD----GKEFRLAQMCGLH-IV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred HHHh---CCHHHHHHHHHHHhh----hhHHHHHHHHHHh-hh-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 9988 678899999998887 8899999988763 22 345566688888999999999999999999875 34
Q ss_pred HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHc
Q 009801 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ-------GNEHAALLIGDAYYY 516 (525)
Q Consensus 457 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~y~~ 516 (525)
..+..+|.+|.+| .+++..+++++|...+.. .+.+.+..+..+|..
T Consensus 1315 gmftELaiLyaKy--------------~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1315 GMFTELAILYSKF--------------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred HHHHHHHHHHHhC--------------CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh
Confidence 4555689888774 277899999999977654 245667777777763
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.74 E-value=9.9e-17 Score=163.09 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=179.3
Q ss_pred cHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCH-HHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHH
Q 009801 226 DDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDR-TKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYT 300 (525)
Q Consensus 226 ~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~-~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~ 300 (525)
.+++++.+++... +.++.+++.+|.++... +++ ++|+.+|+++++. +++.+++.||.+|.. .++++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~-----g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~ 154 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVT-----PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK----KGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS-----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Confidence 4556666665443 36899999999999877 499 9999999999875 678999999999999 99999
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCc---------cCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCC
Q 009801 301 KALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEK---------KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 301 ~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~---------~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~ 368 (525)
+|+.+|+++++.. +..++..+|.++.. . +++++|+.+|+++++. +++.+++.+|.+|..
T Consensus 155 ~A~~~~~~al~~~p~~~~~~~lg~~~~~-----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 225 (474)
T 4abn_A 155 SAHTCFSGALTHCKNKVSLQNLSMVLRQ-----LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS---- 225 (474)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTT-----CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHH-----hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Confidence 9999999999874 67899999999976 5 7999999999999876 678999999999998
Q ss_pred c--------CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 009801 369 K--------RDVKLACKYFLVAANA-----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALE 433 (525)
Q Consensus 369 ~--------~~~~~A~~~~~~a~~~-----~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 433 (525)
. +++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++.+| ..++..++.+
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7 9999999999999975 578999999999998 9999999999999999875 6778999999
Q ss_pred HHhcCCHHHHHHHHHHH
Q 009801 434 SYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a 450 (525)
+...|++++|+..+.+.
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999877655
No 59
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=6.6e-16 Score=152.47 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=183.7
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--- 312 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 312 (525)
.++.+|..+... +++++|+.+|++|++. + .+.+++.+|.+|.. .+++++|+.++++|++.
T Consensus 103 ~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 103 SLFFRGMYEFDQ-----KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH----MKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHh
Confidence 567789998887 4999999999999875 2 35789999999999 99999999999999864
Q ss_pred -C-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 313 -Q-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKY 378 (525)
Q Consensus 313 -~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~ 378 (525)
+ .+.++.++|.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|.. .+++++|+.+
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~ 244 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDD-----FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEH 244 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 1 25678899999987 67999999999999874 22 4578899999999 9999999999
Q ss_pred HHHHHH-----c--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C---hHHHHHHHHHHHhcCC---HH
Q 009801 379 FLVAAN-----A--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P---WSSLSRWALESYLKGD---VG 441 (525)
Q Consensus 379 ~~~a~~-----~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~---~~a~~~l~~~~~~~g~---~~ 441 (525)
|+++++ . ..+.++.++|.++.. .+++++|+.+++++++.. + ......++.++...++ +.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~ 320 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIH 320 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999987 3 347789999999998 999999999999999863 1 2345577888888888 88
Q ss_pred HHHHHHHHHHHc-ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 442 KAFLLYSRMAEL-GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 442 ~A~~~~~~a~~~-~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
+|+.++++.... ........+|.+|.. .+++++|+.+|+++++.
T Consensus 321 ~al~~~~~~~~~~~~~~~~~~la~~y~~----------------~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 321 DLLSYFEKKNLHAYIEACARSAAAVFES----------------SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHH
Confidence 888888874322 345577789999998 77899999999999864
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.74 E-value=1.4e-16 Score=146.43 Aligned_cols=205 Identities=21% Similarity=0.214 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYS 316 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 316 (525)
.+.+++.+|..+... +++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +..
T Consensus 22 ~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 92 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEF-----GDYEKAAEAFTKAIEENKEDAIPYINFANLLSS----VNELERALAFYDKALELDSSAAT 92 (243)
T ss_dssp -------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcchH
Confidence 467788899998777 4999999999999875 578899999999998 999999999999998764 788
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFY 392 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 392 (525)
++..+|.++.. .+++++|+.+++++++. .++.++..+|.++.. .+++++|+.+++++++. .++.++.
T Consensus 93 ~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 163 (243)
T 2q7f_A 93 AYYGAGNVYVV-----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARF 163 (243)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHH
Confidence 99999999986 56999999999999866 478889999999999 99999999999999877 5788999
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 393 QLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 393 ~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
.+|.++.. .+++++|+.+++++++..+ ..++..+|.++...|++++|+.+++++++. +++.++..++.+..
T Consensus 164 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 164 QFGMCLAN----EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHH----HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 99999987 8999999999999998864 678889999999999999999999999876 46777777665543
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=1.3e-16 Score=146.65 Aligned_cols=205 Identities=18% Similarity=0.103 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChh
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG 353 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~ 353 (525)
.+.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+++++++. .++.
T Consensus 22 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~ 92 (243)
T 2q7f_A 22 ASMTGGQQMGRGSE----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS-----VNELERALAFYDKALELDSSAAT 92 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCcchH
Confidence 35678889999998 999999999999998764 78999999999987 56999999999999876 5788
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSR 429 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~ 429 (525)
++..+|.+|.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++.. ...++..
T Consensus 93 ~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 164 (243)
T 2q7f_A 93 AYYGAGNVYVV----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARFQ 164 (243)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHHH
Confidence 99999999999 99999999999999987 578999999999998 999999999999999886 4778889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHH
Q 009801 430 WALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEH 505 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 505 (525)
+|.++...|++++|+.+++++++. .++.++..+|.++.. .+++++|+.+|+++++.. ++.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----------------~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY----------------KENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------TTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----------------ccCHHHHHHHHHHHHccCcchHH
Confidence 999999999999999999999886 578899999999988 667899999999998864 788
Q ss_pred HHHHHHHHHH
Q 009801 506 AALLIGDAYY 515 (525)
Q Consensus 506 a~~~lg~~y~ 515 (525)
++..++.+..
T Consensus 229 ~~~~~~~l~~ 238 (243)
T 2q7f_A 229 ALHAKKLLGH 238 (243)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHHHHh
Confidence 8888776653
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=2.3e-15 Score=139.31 Aligned_cols=191 Identities=19% Similarity=0.149 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSA 317 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 317 (525)
+.+++.+|.++...+ ++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +..+
T Consensus 37 ~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRG-----NTEQAKVPLRKALEIDPSSADAHAALAVVFQT----EMEPKLADEEYRKALASDSRNARV 107 (252)
T ss_dssp HHHHHHHHHHHHHTT-----CTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHH
Confidence 778999999998884 999999999999875 578999999999999 999999999999998864 7889
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHh--C--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD--N--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~--~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~ 391 (525)
+..+|.++.. .+++++|+.+++++++ . .++.++..+|.+|.. .+++++|+.+|+++++. .++.++
T Consensus 108 ~~~la~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (252)
T 2ho1_A 108 LNNYGGFLYE-----QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVA 178 (252)
T ss_dssp HHHHHHHHHH-----TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHH-----HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHH
Confidence 9999999987 5699999999999988 3 456788999999999 99999999999999987 578999
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
..+|.++.. .+++++|+.+++++++.. ...++..++.++...|++++|..+++++++..
T Consensus 179 ~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 179 LEMADLLYK----EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999998 999999999999999886 46778899999999999999999999998874
No 63
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=2e-14 Score=148.61 Aligned_cols=367 Identities=8% Similarity=-0.058 Sum_probs=248.1
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
.+|.+..++..++.. .. .+++++|...|+++. .|.++..+..++.++.. .+++++|...|++++..
T Consensus 8 ~~P~~~~~w~~l~~~-~~-------~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~----~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQ-------NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK----AKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HCTTCHHHHHHHHHH-HH-------SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTT
T ss_pred hCCCCHHHHHHHHHH-HH-------hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Confidence 356677777777763 32 567999999999986 57899999999999988 88999999999999875
Q ss_pred -CCHHHHHHHHH-HHhccccHHHHHH----HHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhh---------c
Q 009801 158 -GNIQSKMAVAY-TYLRQDMHDKAVK----LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRK---------S 222 (525)
Q Consensus 158 -~~~~a~~~la~-~y~~~~~~~~A~~----~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 222 (525)
.+.+.+..++. +....+++++|.+ .|++++....... .. ...+.....+.. .
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~----~~---------~~~w~~~~~~~~~~~~~~~~~~ 142 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI----MS---------YQIWVDYINFLKGVEAVGSYAE 142 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST----TC---------HHHHHHHHHHHHHSCCCSSTTH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc----cc---------HHHHHHHHHHHhcCCCcccHHH
Confidence 36677777764 3345577776665 6666654311000 00 000011111111 1
Q ss_pred cCCcHHHHHHHHHHHHc-CC------------------------------------------------------------
Q 009801 223 RGEDDEAFQILEYQAQK-GN------------------------------------------------------------ 241 (525)
Q Consensus 223 ~~~~~~A~~~~~~~~~~-~~------------------------------------------------------------ 241 (525)
.+++++|...|++++.. ..
T Consensus 143 ~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 143 NQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 23444444444444321 00
Q ss_pred -------HHHHHHHHHHHHhcCCCCccC----HHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCC---CCCCHH-----
Q 009801 242 -------AGAMYKIGLFYYFGLRGLRRD----RTKALMWFSKAADK--GEPQSMEFLGEIYARGAG---VERNYT----- 300 (525)
Q Consensus 242 -------~~a~~~Lg~~y~~~~~~~~~~----~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~---~~~~~~----- 300 (525)
...+......-.... ...++ ..+++..|++++.. .++.+++.+|.++..... ..|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~-~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNP-LRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCS-SCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCC-ccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 011111111100000 00012 24778889998874 788999999999874100 035665
Q ss_pred --HHHHHHHHHHH-c--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--Ch-hHHHHHHHHHHcCCCCcCCH
Q 009801 301 --KALEWLTHAAR-Q--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EA-GGHYNLGVMYYKGIGVKRDV 372 (525)
Q Consensus 301 --~A~~~~~~a~~-~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~-~a~~~lg~~y~~g~~~~~~~ 372 (525)
+|+..|++|++ . .+...+..++.++.. .+++++|...|+++++.. ++ .++..++.++.. .++.
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~ 372 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEES-----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGI 372 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCH
Confidence 89999999986 3 478899999999876 569999999999999874 33 478899999988 8999
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHH-HHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHH
Q 009801 373 KLACKYFLVAANAG--HQKAFYQLAKM-FHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 373 ~~A~~~~~~a~~~~--~~~a~~~l~~~-y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
++|...|++|++.. ....+...+.+ +.. .++.++|...|+++++..| +..+..++..+...|+.++|+.+|
T Consensus 373 ~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~----~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 373 KSGRMIFKKAREDARTRHHVYVTAALMEYYC----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 99999999999863 33444444444 333 7899999999999998854 677888899899999999999999
Q ss_pred HHHHHcC--hH----HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 448 SRMAELG--YE----VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 448 ~~a~~~~--~~----~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
++++... ++ ..+.....+... .++.+.+...++++++.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~----------------~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESN----------------IGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHH----------------SSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHH
Confidence 9999863 22 255555666555 34677888888888764
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=2.2e-15 Score=139.38 Aligned_cols=197 Identities=17% Similarity=0.049 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG 354 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a 354 (525)
+.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+++++++. .++.+
T Consensus 37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~ 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT-----EMEPKLADEEYRKALASDSRNARV 107 (252)
T ss_dssp HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCcCcHHH
Confidence 5778999999999 999999999999998764 78999999999987 56999999999999876 57889
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAAN--A--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~--~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+..+|.+|.. .+++++|+.+|+++++ . .+..++..+|.++.. .+++++|+.+++++++..+ ..++.
T Consensus 108 ~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (252)
T 2ho1_A 108 LNNYGGFLYE----QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVAL 179 (252)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHH----HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 9999999999 9999999999999988 3 467889999999998 9999999999999998864 77889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NE 504 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 504 (525)
.+|.++...|++++|+.+++++++. .+..++..++.++.. .+++++|+.+++++++.. ++
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV----------------FEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----------------ccCHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999999999999876 578889999999988 678999999999998865 45
Q ss_pred HHHH
Q 009801 505 HAAL 508 (525)
Q Consensus 505 ~a~~ 508 (525)
.+..
T Consensus 244 ~~~~ 247 (252)
T 2ho1_A 244 EYQE 247 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 65
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.71 E-value=7.2e-16 Score=152.21 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=117.7
Q ss_pred HHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc
Q 009801 126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----G----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (525)
Q Consensus 126 a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~----~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~ 197 (525)
.++.+|..+.. .+++++|+.+|++|... + ...+++.+|.+|...+++++|+.+++++++..+....
T Consensus 103 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-- 176 (378)
T 3q15_A 103 SLFFRGMYEFD----QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL-- 176 (378)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT--
T ss_pred HHHHHHHHHHH----HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC--
Confidence 56778998888 89999999999999864 2 3578899999999999999999999999876433110
Q ss_pred CCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-
Q 009801 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK- 276 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~- 276 (525)
+ .+..+.++..+|.+|...+ ++++|+.+|+++++.
T Consensus 177 ----------------------------~-----------~~~~~~~~~~lg~~y~~~~-----~~~~A~~~~~~al~~~ 212 (378)
T 3q15_A 177 ----------------------------Y-----------SIRTIQSLFVIAGNYDDFK-----HYDKALPHLEAALELA 212 (378)
T ss_dssp ----------------------------C-----------HHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHH
T ss_pred ----------------------------c-----------hhhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
Confidence 0 1123567888999988774 899999999988864
Q ss_pred ---CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 009801 277 ---GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-----Q--LYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (525)
Q Consensus 277 ---~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~ 342 (525)
++ +.++.+||.+|.. .+++++|+.+|+++++. . .+.++..+|.++.. .|++++|+.+
T Consensus 213 ~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~ 283 (378)
T 3q15_A 213 MDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK-----AGQTQKAFQF 283 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-----CCCHHHHHHH
Confidence 22 3567777777777 77777777777777652 1 24455555555554 3455555555
Q ss_pred HHHHHh
Q 009801 343 FEKAAD 348 (525)
Q Consensus 343 ~~~a~~ 348 (525)
++++++
T Consensus 284 ~~~al~ 289 (378)
T 3q15_A 284 IEEGLD 289 (378)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=9.5e-15 Score=132.17 Aligned_cols=199 Identities=19% Similarity=0.130 Sum_probs=172.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L 314 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~ 314 (525)
+.++.+++.+|.++...+ ++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +
T Consensus 5 ~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~ 75 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQ-----DYRQATASIEDALKSDPKNELAWLVRAEIYQY----LKVNDKAQESFRQALSIKPDS 75 (225)
T ss_dssp CHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred cccHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCC
Confidence 456788999999998884 999999999999875 578899999999999 999999999999998764 7
Q ss_pred HHHHHHHHHHHHhCCCCCc-cCHHHHHHHHHHHHh--C--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC
Q 009801 315 YSAYNGIGYLYVKGYGVEK-KNYTKAKEYFEKAAD--N--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH 387 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~-~~~~~A~~~~~~a~~--~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~ 387 (525)
..++..+|.++.. . +++++|+.+++++++ . .++.+++.+|.++.. .+++++|+.+++++++. .+
T Consensus 76 ~~~~~~l~~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 76 AEINNNYGWFLCG-----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp HHHHHHHHHHHHT-----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Confidence 8899999999986 6 799999999999998 2 236788999999999 99999999999999877 57
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQ 459 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~ 459 (525)
+.++..+|.++.. .+++++|+.+++++++..+ ..++..++.++...|+.++|..+++.+.+. +++.+.
T Consensus 147 ~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 147 PPAFKELARTKML----AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 8899999999998 9999999999999987744 567778888889999999999999988755 344443
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.70 E-value=8.5e-15 Score=133.44 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=145.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CC
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ---QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE 351 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~ 351 (525)
.++.+++.+|.++.. .+++++|+.+|+++++. .+..+++.+|.++.. .+++++|+.+|+++++. ++
T Consensus 5 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~p~~ 75 (228)
T 4i17_A 5 TDPNQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-----IKKYKEAADYFDIAIKKNYNL 75 (228)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCSH
T ss_pred cCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-----hhcHHHHHHHHHHHHHhCcch
Confidence 456778888888888 88888888888888764 356777788888876 56888888888888866 35
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH-------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ-------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~-------~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
+.+++.+|.+|.. .+++++|+.+|+++++. +++ .++..+|.++.. .+++++|+.+|+++++.+
T Consensus 76 ~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~ 147 (228)
T 4i17_A 76 ANAYIGKSAAYRD----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVT 147 (228)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcC
Confidence 6778888888888 88888888888888876 344 557888888887 888888888888888887
Q ss_pred Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHH
Q 009801 423 PW----SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA 498 (525)
Q Consensus 423 ~~----~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 498 (525)
|. .+++.+|.+++..|+ ..++++...+........+..... .+.+++|+.+|+++
T Consensus 148 p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~~~~A~~~~~~a 206 (228)
T 4i17_A 148 SKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKYASEKAKA----------------DAAFKKAVDYLGEA 206 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHHHHHHHHH----------------HHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHHHHHHHHH----------------HHHHHHHHHHHHHH
Confidence 65 567788888765543 344555554322222222222222 56788999999999
Q ss_pred HhCC--CHHHHHHHHHHH
Q 009801 499 SEQG--NEHAALLIGDAY 514 (525)
Q Consensus 499 ~~~~--~~~a~~~lg~~y 514 (525)
++.. ++++...|+.+.
T Consensus 207 ~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 207 VTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHH
Confidence 8754 778887777764
No 68
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=4.9e-14 Score=145.59 Aligned_cols=338 Identities=11% Similarity=-0.013 Sum_probs=243.9
Q ss_pred HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhc
Q 009801 119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196 (525)
Q Consensus 119 ~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~ 196 (525)
.+|.+..++..++.. .. .+++++|...|++++.. .+...+..++.++...+++++|...|++++...|.
T Consensus 8 ~~P~~~~~w~~l~~~-~~----~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~---- 78 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQ----NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH---- 78 (530)
T ss_dssp HCTTCHHHHHHHHHH-HH----SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC----
T ss_pred hCCCCHHHHHHHHHH-HH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----
Confidence 478899999999985 54 67999999999999874 68999999999999999999999999999764221
Q ss_pred cCCCCCchhhhhcccchhhhh-HhhhccCCcHHHHH----HHHHHHHc-----CCHHHHHHHHHHHHhcCC----CCccC
Q 009801 197 SKDSPVIEPIRIHNGAEENKG-ALRKSRGEDDEAFQ----ILEYQAQK-----GNAGAMYKIGLFYYFGLR----GLRRD 262 (525)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~----~~~~~~~~-----~~~~a~~~Lg~~y~~~~~----~~~~~ 262 (525)
...+.... .+....+++++|.+ .|+++... .+...+...+.+...... ...++
T Consensus 79 -------------~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 79 -------------IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp -------------HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred -------------hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 01122222 22334566666654 77776542 456777777776644100 01258
Q ss_pred HHHHHHHHHHHHhcCC-H--HHHHHHHH--------------------------HHHc------CCC-----C-------
Q 009801 263 RTKALMWFSKAADKGE-P--QSMEFLGE--------------------------IYAR------GAG-----V------- 295 (525)
Q Consensus 263 ~~~A~~~~~~a~~~~~-~--~a~~~Lg~--------------------------~y~~------g~~-----~------- 295 (525)
+++|..+|+++++... . ..+..... +|.. +.. +
T Consensus 146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 8899999999887421 1 11111100 0000 000 0
Q ss_pred ---------------------CCC----HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCC--CCccCHH-------HH
Q 009801 296 ---------------------ERN----YTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYG--VEKKNYT-------KA 339 (525)
Q Consensus 296 ---------------------~~~----~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~--~~~~~~~-------~A 339 (525)
.++ ..+++..|++++.. .++.++..+|.++..... ...|+++ +|
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 011 23677889998875 489999999999863000 0024655 99
Q ss_pred HHHHHHHHh-C--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CH-HHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 340 KEYFEKAAD-N--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQ-KAFYQLAKMFHTGVGLKKNLHMATA 413 (525)
Q Consensus 340 ~~~~~~a~~-~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~-~a~~~l~~~y~~g~g~~~~~~~A~~ 413 (525)
+..|++|++ . +++..+..+|.++.. .+++++|...|+++++.. ++ .++..++.++.. .+++++|..
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~ 377 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEES----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRM 377 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHH
Confidence 999999996 3 578899999999999 999999999999999874 33 578888888876 889999999
Q ss_pred HHHHHHHcCCh--HHHHHHHHH-HHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhH
Q 009801 414 LYKLVAERGPW--SSLSRWALE-SYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488 (525)
Q Consensus 414 ~~~~a~~~~~~--~a~~~l~~~-~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (525)
.|++|++..+. ..+...+.+ +...|++++|+..|+++++. +++.++.+++.++.. .++.
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~----------------~g~~ 441 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----------------LNED 441 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----------------TTCH
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----------------CCCH
Confidence 99999988653 344444444 34699999999999999976 578899999988876 5678
Q ss_pred HHHHHHHHHHHhCC
Q 009801 489 QCAHSLWWQASEQG 502 (525)
Q Consensus 489 ~~A~~~~~~a~~~~ 502 (525)
++|+.+|++++...
T Consensus 442 ~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 442 NNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHhcc
Confidence 99999999999864
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.70 E-value=4.4e-16 Score=164.71 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=140.6
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CC
Q 009801 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE 351 (525)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~ 351 (525)
++++.++.+||.+|.. .|++++|+.+|++|++.. ++.++++||.+|.. .|++++|+.+|++|++. ++
T Consensus 6 P~~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-----~g~~~eA~~~~~~Al~l~P~~ 76 (723)
T 4gyw_A 6 PTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-----QGKLQEALMHYKEAIRISPTF 76 (723)
T ss_dssp CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC
Confidence 3567888999999998 899999999999998764 78899999999987 56899999999998866 57
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
+.++++||.+|.. .+++++|+..|+++++. +++.+++++|.+|.. .+++++|+.+|++|++.+| ..++
T Consensus 77 ~~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~ 148 (723)
T 4gyw_A 77 ADAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAY 148 (723)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Confidence 8899999999999 99999999999999877 678899999999987 8999999999999998874 7788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++|.++...|++++|++.++++++.
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 89999999999999999999998865
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.69 E-value=5.6e-16 Score=163.92 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 313 ~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
++++++++||.+|.. .|++++|+.+|++|++. +++.++++||.+|.. .+++++|+..|+++++. +++
T Consensus 7 ~~a~al~nLG~~~~~-----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~----~g~~~eA~~~~~~Al~l~P~~~ 77 (723)
T 4gyw_A 7 THADSLNNLANIKRE-----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRISPTFA 77 (723)
T ss_dssp HHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCH
Confidence 368899999999987 67999999999999876 689999999999999 99999999999999987 689
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
.+++++|.++.. .+++++|+++|++|++.++ ..+++++|.++..+|++++|+.+|++|++. +++.++.++|.
T Consensus 78 ~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 78 DAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 999999999998 9999999999999999974 789999999999999999999999999987 68999999999
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
++.. .+++++|+..|+++++
T Consensus 154 ~l~~----------------~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQI----------------VCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHH----------------TTCCTTHHHHHHHHHH
T ss_pred HHHh----------------cccHHHHHHHHHHHHH
Confidence 9998 5567778888887765
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.69 E-value=8.9e-15 Score=133.28 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=166.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
.+.+|.+++.+|.++...+ ++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++++..
T Consensus 3 ~~~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p 73 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAK-----NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN----IKKYKEAADYFDIAIKKNY 73 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCc
Confidence 4567899999999998884 999999999999875 467888999999999 999999999999999875
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh-------hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA-------GGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~-------~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~ 383 (525)
++.++..+|.+|.. .+++++|+.+|+++++. +++ .+++.+|.++.. .+++++|+.+|++++
T Consensus 74 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al 144 (228)
T 4i17_A 74 NLANAYIGKSAAYRD-----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHAT 144 (228)
T ss_dssp SHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHH
Confidence 68899999999987 57999999999999876 445 568999999999 999999999999999
Q ss_pred HcC----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHH
Q 009801 384 NAG----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEV 457 (525)
Q Consensus 384 ~~~----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~ 457 (525)
+.+ ++.++.++|.+|.. .+...++++....+.......+......+.+++|+.+|+++++. +++.
T Consensus 145 ~~~p~~~~~~~~~~l~~~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 145 DVTSKKWKTDALYSLGVLFYN---------NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp TSSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcCCCcccHHHHHHHHHHHHH---------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 874 45889999999864 34555677777664444444555566778899999999999887 5677
Q ss_pred HHHHHHHHH
Q 009801 458 AQSNAAWIL 466 (525)
Q Consensus 458 a~~~la~~~ 466 (525)
+...++.+.
T Consensus 216 ~~~~l~~i~ 224 (228)
T 4i17_A 216 IKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 72
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=1.7e-14 Score=130.43 Aligned_cols=201 Identities=17% Similarity=0.080 Sum_probs=174.4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
+++.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+++++++. .++
T Consensus 6 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMR----GQDYRQATASIEDALKSDPKNELAWLVRAEIYQY-----LKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCCh
Confidence 456788999999999 999999999999998864 78999999999987 56999999999999875 578
Q ss_pred hHHHHHHHHHHcCCCCc-CCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 353 GGHYNLGVMYYKGIGVK-RDVKLACKYFLVAAN--A--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~--~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
.++..+|.+|.. . +++++|+.+++++++ . .+..++..+|.++.. .+++++|+.+++++++..+ ..
T Consensus 77 ~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 148 (225)
T 2vq2_A 77 EINNNYGWFLCG----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQFPP 148 (225)
T ss_dssp HHHHHHHHHHHT----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHH----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCch
Confidence 899999999999 9 999999999999998 3 347889999999998 9999999999999998864 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc---ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC-
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL---GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ- 501 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 501 (525)
++..+|.++...|++++|+.+++++++. .++.++..++.++.. .+++++|..+++.+.+.
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA----------------LGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999875 567788778888777 66789999999988754
Q ss_pred -CCHHHHHHH
Q 009801 502 -GNEHAALLI 510 (525)
Q Consensus 502 -~~~~a~~~l 510 (525)
+++.+...+
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 356555443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=7.7e-16 Score=146.90 Aligned_cols=237 Identities=15% Similarity=0.120 Sum_probs=175.3
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 238 (525)
+..++..+|.++...|++++|+.+|+++++........ ..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----------------------------------------~~ 65 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH----------------------------------------DH 65 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS----------------------------------------SS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC----------------------------------------CC
Confidence 45788899999999999999999999887643221000 01
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc------C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK------G----EPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~------~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
+..+.++..+|.+|...+ ++++|+.+|+++++. + ...++..+|.+|.. .+++++|+.+|++
T Consensus 66 ~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 136 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQN-----KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKR 136 (311)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCcHHHHHHHHHH
Confidence 234678899999998884 999999999999864 1 24688999999999 9999999999999
Q ss_pred HHHc------C----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC------C----ChhHHHHHHHHHHcCCCC
Q 009801 309 AARQ------Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------E----EAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 309 a~~~------~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~------~----~~~a~~~lg~~y~~g~~~ 368 (525)
+++. + ...++..+|.++.. .+++++|+.+++++++. + .+.++..+|.+|..
T Consensus 137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---- 207 (311)
T 3nf1_A 137 ALEIREKVLGKDHPDVAKQLNNLALLCQN-----QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK---- 207 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----
Confidence 9875 1 45678999999986 56999999999999875 1 24578899999999
Q ss_pred cCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCC--CCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 009801 369 KRDVKLACKYFLVAANAG-----------HQKAFYQLAKMFHTGV--GLKKNLHMATALYKLVAERGP--WSSLSRWALE 433 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~-----------~~~a~~~l~~~y~~g~--g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 433 (525)
.+++++|+.+++++++.. ....+..++.....+. ...+.+.+|+.+++++....+ ..++..+|.+
T Consensus 208 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 287 (311)
T 3nf1_A 208 QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287 (311)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 999999999999998641 1112233333333211 135677778888888887664 5678899999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 009801 434 SYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~ 453 (525)
+...|++++|+.+|+++++.
T Consensus 288 ~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 288 YRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=149.12 Aligned_cols=239 Identities=11% Similarity=0.074 Sum_probs=167.2
Q ss_pred ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Q 009801 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----------GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (525)
Q Consensus 123 ~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----------~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~ 192 (525)
.+.++..+|.+|.. .+++++|+.+|+++++. ....++..+|.+|...|++++|+.+|+++++....
T Consensus 26 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556666666666 66777777777776652 23567888899999999999999999888764321
Q ss_pred hhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 009801 193 SFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (525)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (525)
.... ..+..+.++..+|.+|... +++++|+.+|++
T Consensus 102 ~~~~----------------------------------------~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~ 136 (311)
T 3nf1_A 102 TLGK----------------------------------------DHPAVAATLNNLAVLYGKR-----GKYKEAEPLCKR 136 (311)
T ss_dssp HHCT----------------------------------------TCHHHHHHHHHHHHHHHTT-----TCHHHHHHHHHH
T ss_pred HhCC----------------------------------------CChHHHHHHHHHHHHHHHc-----CcHHHHHHHHHH
Confidence 1000 0122356788999999877 499999999999
Q ss_pred HHhc----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--------C--CHHHHHHHHHHHHhCCCCC
Q 009801 273 AADK----------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--------Q--LYSAYNGIGYLYVKGYGVE 332 (525)
Q Consensus 273 a~~~----------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~g~~~~ 332 (525)
+++. ....++..+|.+|.. .+++++|+.+|+++++. . ...++..+|.++..
T Consensus 137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----- 207 (311)
T 3nf1_A 137 ALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK----- 207 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-----
Confidence 8864 134678899999998 99999999999999875 2 35678899999987
Q ss_pred ccCHHHHHHHHHHHHhC-----------CChhHHHHHHHHHHcCC--CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 009801 333 KKNYTKAKEYFEKAADN-----------EEAGGHYNLGVMYYKGI--GVKRDVKLACKYFLVAANA--GHQKAFYQLAKM 397 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~-----------~~~~a~~~lg~~y~~g~--~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~ 397 (525)
.+++++|+.+++++++. .....+..++.++..+. .....+.+|..+++++... ..+.++..+|.+
T Consensus 208 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 287 (311)
T 3nf1_A 208 QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287 (311)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 67999999999999863 12334444444444321 1256666777788877754 457788999999
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 398 FHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 398 y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
|.. .+++++|+.+|+++++..+
T Consensus 288 ~~~----~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 288 YRR----QGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHH----HTCHHHHHHHHHHHHHHHC
T ss_pred HHH----CCCHHHHHHHHHHHHHHhh
Confidence 998 9999999999999987643
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.65 E-value=2.2e-13 Score=133.98 Aligned_cols=261 Identities=9% Similarity=-0.029 Sum_probs=202.0
Q ss_pred HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC---CCH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc
Q 009801 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG---GNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (525)
Q Consensus 125 ~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~---~~~----~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~ 197 (525)
++...+|.++.. .+++++|+.++++++.. ++. .++..+|.++...|++++|+..+++++...+....
T Consensus 15 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 88 (373)
T 1hz4_A 15 EFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-- 88 (373)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc--
Confidence 455677777777 78999999999998764 232 36788999999999999999999998775433100
Q ss_pred CCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-
Q 009801 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK- 276 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~- 276 (525)
......++..+|.++...| ++++|+.+++++++.
T Consensus 89 ----------------------------------------~~~~~~~~~~la~~~~~~G-----~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 89 ----------------------------------------WHYALWSLIQQSEILFAQG-----FLQTAWETQEKAFQLI 123 (373)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHH
Confidence 0011356788999998884 999999999998864
Q ss_pred ---C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCccCHHHHH
Q 009801 277 ---G------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (525)
Q Consensus 277 ---~------~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~~A~ 340 (525)
+ ...++..+|.++.. .|++++|+.+++++++.. ...++..+|.++.. .|++++|+
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~ 194 (373)
T 1hz4_A 124 NEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA-----RGDLDNAR 194 (373)
T ss_dssp HHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH-----HTCHHHHH
T ss_pred HHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH-----cCCHHHHH
Confidence 1 23567789999998 999999999999998753 24678889999986 67999999
Q ss_pred HHHHHHHhC----CChhHHH-----HHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCc
Q 009801 341 EYFEKAADN----EEAGGHY-----NLGVMYYKGIGVKRDVKLACKYFLVAANAGH------QKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 341 ~~~~~a~~~----~~~~a~~-----~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~------~~a~~~l~~~y~~g~g~~ 405 (525)
.++++++.. +.+..+. .++.++.. .+++++|..+++++.+... ..++..++.++.. .
T Consensus 195 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~ 266 (373)
T 1hz4_A 195 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----L 266 (373)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH----c
Confidence 999998754 2222221 34455778 8999999999999876532 3356788888987 8
Q ss_pred CCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 406 KNLHMATALYKLVAERG--------PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~--------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++++|+..++++++.. ...++..+|.++...|++++|..++++++..
T Consensus 267 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 267 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999997652 1246778899999999999999999999876
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.64 E-value=1.1e-13 Score=136.15 Aligned_cols=260 Identities=12% Similarity=-0.064 Sum_probs=197.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
.+...+|.++...|++++|+.++++++...+.. + ...
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------~------------~~~ 51 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPG-------------------------------W------------FYS 51 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-------------------------------C------------HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-------------------------------c------------hhH
Confidence 345666777777888888888877775421100 0 000
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GEP----QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
...++..+|.++...+ ++++|+.++++++.. +++ .++..+|.++.. .|++++|+.+++++++.
T Consensus 52 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKG-----ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 1246788999998774 999999999999864 333 457889999999 99999999999999864
Q ss_pred C----------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-------ChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 313 Q----------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-------EAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 313 ~----------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
. ...++..+|.++.. .|++++|..+++++++.. ...++..+|.++.. .+++++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 193 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWA-----WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNA 193 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHH
T ss_pred HHHhccccCcHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHH
Confidence 2 24567889999876 579999999999998652 23578899999999 9999999
Q ss_pred HHHHHHHHHc----CC-HHHHH----HHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCH
Q 009801 376 CKYFLVAANA----GH-QKAFY----QLAKMFHTGVGLKKNLHMATALYKLVAERGP------WSSLSRWALESYLKGDV 440 (525)
Q Consensus 376 ~~~~~~a~~~----~~-~~a~~----~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~l~~~~~~~g~~ 440 (525)
..+++++.+. +. ..... ..+.++.. .+++++|..++++++...+ ...+..++.++...|++
T Consensus 194 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 269 (373)
T 1hz4_A 194 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF 269 (373)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCH
Confidence 9999999865 22 11111 23344665 8999999999999987653 22567889999999999
Q ss_pred HHHHHHHHHHHHc----C----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 441 GKAFLLYSRMAEL----G----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 441 ~~A~~~~~~a~~~----~----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
++|...++++++. + ...++..+|.++.. .+++++|..+++++++.
T Consensus 270 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 270 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ----------------AGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH----------------hCCHHHHHHHHHHHHHH
Confidence 9999999999764 2 22477888999888 67889999999998863
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.63 E-value=5.9e-15 Score=140.06 Aligned_cols=210 Identities=14% Similarity=0.044 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhCCCCCc
Q 009801 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~ 333 (525)
++++|+.+|+++ |.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|.. .
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-----~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-----G 90 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----T
T ss_pred cHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-----C
Confidence 589999999888 556777 88999999999999875 22 5688999999987 5
Q ss_pred cCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCc-CCHHHHHHHHHHHHHc----CC----HHHHHHHHH
Q 009801 334 KNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVK-RDVKLACKYFLVAANA----GH----QKAFYQLAK 396 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~~----~~----~~a~~~l~~ 396 (525)
|++++|+.+|++|++. ++ +.++.++|.+|.. . +++++|+.+|++|++. ++ ..++.++|.
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 6999999999999865 33 4578899999998 8 9999999999999976 22 467889999
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcCC--h-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcChH--H-----HHH
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERGP--W-------SSLSRWALESYLKGDVGKAFLLYSRMAELGYE--V-----AQS 460 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~--~-------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~-----a~~ 460 (525)
++.. .+++++|+.+|+++++..+ . .++.++|.++..+|++++|+.+|+++++..+. . .+.
T Consensus 167 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 167 LKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242 (292)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHH
T ss_pred HHHH----hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 9998 9999999999999998753 1 15788999999999999999999999876322 1 234
Q ss_pred HHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
.++..+.. ++ .+++++|+..|+++++.+ +...+.++-...
T Consensus 243 ~l~~~~~~-~~-------------~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 243 SLIDAVNE-GD-------------SEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHT-TC-------------TTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CC-------------HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 45555532 11 567999999999887766 344555554444
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.61 E-value=1.8e-14 Score=136.69 Aligned_cols=197 Identities=13% Similarity=0.060 Sum_probs=158.6
Q ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCC
Q 009801 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~ 296 (525)
++++|+..|+++ |.+|... +++++|+.+|+++++. ++ +.++.++|.+|.. .
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLR-----KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS----G 90 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHT-----TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred cHHHHHHHHHHH------------HHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----C
Confidence 488999888876 5567666 4999999999999875 33 4688999999999 9
Q ss_pred CCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhCCCCCc-cCHHHHHHHHHHHHhC----CC----hhHHHHHH
Q 009801 297 RNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEK-KNYTKAKEYFEKAADN----EE----AGGHYNLG 359 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~-~~~~~A~~~~~~a~~~----~~----~~a~~~lg 359 (525)
+++++|+.+|++|++. ++ +.++.++|.+|.. . +++++|+.+|++|++. ++ +.++.++|
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN-----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999999999999875 33 4688999999986 4 6999999999999875 22 45788999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHcC--CH-------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH-----
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANAG--HQ-------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS----- 425 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~-------~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----- 425 (525)
.+|.. .+++++|+.+|+++++.. +. .++.++|.++.. .+++++|+.+|+++++..|..
T Consensus 166 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 166 DLKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGCC---------
T ss_pred HHHHH----hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 99999 999999999999999862 21 267889999998 899999999999999876532
Q ss_pred --HHHHHHHHHH--hcCCHHHHHHHHHHHHHcCh
Q 009801 426 --SLSRWALESY--LKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 426 --a~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~ 455 (525)
....++..+. ..+++++|+..|++++..++
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 2334555443 45689999999999887754
No 79
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=4.6e-13 Score=128.00 Aligned_cols=211 Identities=11% Similarity=0.048 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC--CCccCH-------HHHHHHHHHHHh-c--CCHHHHHHHHHHHHcC
Q 009801 227 DEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLR--GLRRDR-------TKALMWFSKAAD-K--GEPQSMEFLGEIYARG 292 (525)
Q Consensus 227 ~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~--~~~~~~-------~~A~~~~~~a~~-~--~~~~a~~~Lg~~y~~g 292 (525)
++|+..|++++. |.++++++.+|.++...+. ...+++ ++|+..|++|++ . +++.++..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~- 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES- 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence 678888888754 5888899999888864310 012453 888888888887 3 567788888888888
Q ss_pred CCCCCCHHHHHHHHHHHHHcC--CHH-HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHH-HcCC
Q 009801 293 AGVERNYTKALEWLTHAARQQ--LYS-AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMY-YKGI 366 (525)
Q Consensus 293 ~~~~~~~~~A~~~~~~a~~~~--~~~-a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y-~~g~ 366 (525)
.+++++|+..|+++++.. ++. ++..+|.++.. .+++++|+..|+++++.. +...+...+.+. ..
T Consensus 112 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~-- 181 (308)
T 2ond_A 112 ---RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-- 181 (308)
T ss_dssp ---TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT--
T ss_pred ---cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--
Confidence 888888888888888764 454 78888888765 568888888888888763 444555555443 23
Q ss_pred CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---C---ChHHHHHHHHHHHhcC
Q 009801 367 GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER---G---PWSSLSRWALESYLKG 438 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~l~~~~~~~g 438 (525)
.+++++|...|+++++. +++.++..++.++.. .+++++|+..|+++++. . ....+..++......|
T Consensus 182 --~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 182 --SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp --SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred --cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 57888888888888765 677888888888876 78888888888888885 2 2346667777788888
Q ss_pred CHHHHHHHHHHHHHcC
Q 009801 439 DVGKAFLLYSRMAELG 454 (525)
Q Consensus 439 ~~~~A~~~~~~a~~~~ 454 (525)
+.++|...++++++..
T Consensus 256 ~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 256 DLASILKVEKRRFTAF 271 (308)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 8888888888888763
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.59 E-value=2.6e-14 Score=134.08 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=161.2
Q ss_pred hccCCcHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----------CCHH
Q 009801 221 KSRGEDDEAFQILEYQAQ----------KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----------GEPQ 280 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~----------~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~ 280 (525)
...+++++|+.+++++.+ +..+.++..+|.+|...+ ++++|+.+|+++++. ..+.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-----KYKEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 356777788888887754 235778999999999884 999999999999865 2356
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ----------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN- 349 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~- 349 (525)
++..+|.+|.. .+++++|+.+|+++++. ....++..+|.++.. .+++++|+.+++++++.
T Consensus 87 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 87 TLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN-----QGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHH
Confidence 88999999999 99999999999999875 146788999999987 67999999999999876
Q ss_pred -------C--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHcCCC--CcCC
Q 009801 350 -------E--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-----------GHQKAFYQLAKMFHTGVG--LKKN 407 (525)
Q Consensus 350 -------~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----------~~~~a~~~l~~~y~~g~g--~~~~ 407 (525)
. .+.++..+|.+|.. .+++++|+.+++++++. .....+..++..+..+.- ....
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence 1 24578899999999 99999999999999864 123355556666554211 2233
Q ss_pred HHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 408 LHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+.++..+++...... ...++..+|.++...|++++|+.+++++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555554433322 2457889999999999999999999999864
No 81
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=1e-12 Score=125.51 Aligned_cols=194 Identities=10% Similarity=0.018 Sum_probs=132.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHc--------CCC--CCCCHHHHHHHHHHHHH-c--CCHHHHHHHHHHHHhCCC
Q 009801 266 ALMWFSKAAD--KGEPQSMEFLGEIYAR--------GAG--VERNYTKALEWLTHAAR-Q--QLYSAYNGIGYLYVKGYG 330 (525)
Q Consensus 266 A~~~~~~a~~--~~~~~a~~~Lg~~y~~--------g~~--~~~~~~~A~~~~~~a~~-~--~~~~a~~~lg~~~~~g~~ 330 (525)
|+..|++++. ++++.+|+.+|.++.. |.. ..++.++|+..|++|++ . ++..++..+|.++..
T Consensus 35 a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~--- 111 (308)
T 2ond_A 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES--- 111 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh---
Confidence 5566666665 4777888888877652 210 01235788888888877 3 366778888887765
Q ss_pred CCccCHHHHHHHHHHHHhCC--Chh-HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCc
Q 009801 331 VEKKNYTKAKEYFEKAADNE--EAG-GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 331 ~~~~~~~~A~~~~~~a~~~~--~~~-a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~ 405 (525)
.+++++|...|+++++.. ++. ++..+|.++.. .+++++|...|+++++.. +...+...+.+... ..
T Consensus 112 --~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~ 182 (308)
T 2ond_A 112 --RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY---CS 182 (308)
T ss_dssp --TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TS
T ss_pred --cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---Hc
Confidence 457888888888888763 454 78888888887 788888888888888763 34444444444221 14
Q ss_pred CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------ChHHHHHHHHHHHhhhCC
Q 009801 406 KNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL------GYEVAQSNAAWILDKYGE 471 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~------~~~~a~~~la~~~~~~~~ 471 (525)
+++++|+..|+++++.. .+.++..++..+...|++++|+..|+++++. .....+..++.++...|+
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 78888888888887764 3567777777788888888888888888873 234566666777666555
No 82
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.58 E-value=4.6e-15 Score=144.38 Aligned_cols=284 Identities=13% Similarity=0.028 Sum_probs=113.0
Q ss_pred hHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYA 184 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~ 184 (525)
.+++++|..++++. +++.++..||..+.. .+++++|++.|.++ +++.++..++..+...|++++|+.+++
T Consensus 16 ~~~ld~A~~fae~~---~~~~vWs~La~A~l~----~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 16 IGNLDRAYEFAERC---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC---CChHHHHHHHHHHHH----cCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45566666666665 334566667776666 66677777777654 455566666666666677777777666
Q ss_pred HHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHH
Q 009801 185 ELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRT 264 (525)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~ 264 (525)
.+.+..+. ..+...+...+.+.|++.++.++++. .+..++..+|..+... ++++
T Consensus 86 ~ark~~~~-----------------~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~~-----g~ye 139 (449)
T 1b89_A 86 MARKKARE-----------------SYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYDE-----KMYD 139 (449)
T ss_dssp ----------------------------------------CHHHHTTTTTC----C---------------------CTT
T ss_pred HHHHhCcc-----------------chhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHHc-----CCHH
Confidence 55442111 01122344455566666666655532 3345777777777666 3777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 009801 265 KALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (525)
Q Consensus 265 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~ 344 (525)
+|..+|.++ ..+..||.++.. .+++++|++.++++ +++.++..++..+.. .++++.|..+..
T Consensus 140 eA~~~Y~~a------~n~~~LA~~L~~----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~-----~~ef~lA~~~~l 201 (449)
T 1b89_A 140 AAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVD-----GKEFRLAQMCGL 201 (449)
T ss_dssp THHHHHHHT------TCHHHHHHHHHT----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHH-----TTCHHHHHHTTT
T ss_pred HHHHHHHHh------hhHHHHHHHHHH----hccHHHHHHHHHHc---CCchhHHHHHHHHHH-----cCcHHHHHHHHH
Confidence 777777766 356677777777 77777777777777 467777776666655 457777755554
Q ss_pred HHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 345 KAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 345 ~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
..+ .+|+-...+..+|.. .+.+++|+.++++++.. .+...+..||.+|..- ..++..++++.|...+...
T Consensus 202 ~L~--~~ad~l~~lv~~Yek----~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky--~p~k~~ehl~~~~~~ini~ 273 (449)
T 1b89_A 202 HIV--VHADELEELINYYQD----RGYFEELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIP 273 (449)
T ss_dssp TTT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHSTTSCHH
T ss_pred HHH--hCHhhHHHHHHHHHH----CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhcCc
Confidence 322 355555567777777 77888888888877755 4666777777777541 2345555555555443332
Q ss_pred C-------hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 423 P-------WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 423 ~-------~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
+ ...+..+..+|..-++++.|+...-+.
T Consensus 274 k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 274 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 2 344556777777788888777665444
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.57 E-value=1.3e-13 Score=123.74 Aligned_cols=161 Identities=12% Similarity=0.052 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHH----------------HHHHHHhCCCCCccCHHHH
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNG----------------IGYLYVKGYGVEKKNYTKA 339 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~----------------lg~~~~~g~~~~~~~~~~A 339 (525)
++..++..|..+.. .+++++|+.+|+++++.. ++.+++. +|.+|.. .+++++|
T Consensus 3 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A 73 (208)
T 3urz_A 3 SVDEMLQKVSAAIE----AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK-----NRNYDKA 73 (208)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH-----TTCHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH-----CCCHHHH
Confidence 45667788888888 888888888888888764 5566666 4444444 3445555
Q ss_pred HHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 340 KEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALY 415 (525)
Q Consensus 340 ~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~ 415 (525)
+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++++|.+|..- ...+.+.+...+
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--~~~~~~~~~~~~ 147 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVC----RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT--AEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH--hHHHHHHHHHHH
Confidence 5555554433 344444455555544 45555555555544443 3444444454444320 011223334444
Q ss_pred HHHHHcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 416 KLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 416 ~~a~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++++...+ ..+++.+|..+...|++++|+.+|++|++.
T Consensus 148 ~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 148 KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp C---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44332222 123344444444444455555555544444
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.57 E-value=7.6e-14 Score=130.00 Aligned_cols=150 Identities=14% Similarity=0.174 Sum_probs=108.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
.++.++.+++.+|..+...+ ++++|+..|+++++. ++ +.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQG-----KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQ 80 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTT-----CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHH
Confidence 45678999999999999884 999999999999986 45 7899999999999 9999999999999998
Q ss_pred cC-----CHHHHHHHHHHHHhC---CCCCccCHHHHHHHHHHHHhC--CChhHH-----------------HHHHHHHHc
Q 009801 312 QQ-----LYSAYNGIGYLYVKG---YGVEKKNYTKAKEYFEKAADN--EEAGGH-----------------YNLGVMYYK 364 (525)
Q Consensus 312 ~~-----~~~a~~~lg~~~~~g---~~~~~~~~~~A~~~~~~a~~~--~~~~a~-----------------~~lg~~y~~ 364 (525)
.. .+.+++.+|.++... .....+++++|+.+|+++++. +++.+. +.+|.+|..
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 62 367899999998641 011146999999999999875 344444 444555555
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHH
Q 009801 365 GIGVKRDVKLACKYFLVAANA--G---HQKAFYQLAKMFH 399 (525)
Q Consensus 365 g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~l~~~y~ 399 (525)
.+++++|+..|+++++. + .+.+++++|.+|.
T Consensus 161 ----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 161 ----RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred ----ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 45555555555554443 1 2334444444444
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.57 E-value=6.3e-14 Score=131.38 Aligned_cols=211 Identities=18% Similarity=0.166 Sum_probs=163.1
Q ss_pred CCccCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------C----CHHH
Q 009801 258 GLRRDRTKALMWFSKAADK-------G---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ------Q----LYSA 317 (525)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~----~~~a 317 (525)
...+++++|+.+|+++++. + .+.++..+|.+|.. .+++++|+.+|+++++. + ...+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD----QNKYKEAAHLLNDALAIREKTLGKDHPAVAAT 87 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 4568899999999999873 2 35688999999999 99999999999999865 2 4568
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----------CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-- 385 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-- 385 (525)
+..+|.++.. .+++++|+.+|+++++. ..+.++.++|.+|.. .+++++|+.+|+++++.
T Consensus 88 ~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 88 LNNLAVLYGK-----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Confidence 8999999987 77999999999999865 235678899999999 99999999999999876
Q ss_pred ------C--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCC------H
Q 009801 386 ------G--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----------PWSSLSRWALESYLKGD------V 440 (525)
Q Consensus 386 ------~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~l~~~~~~~g~------~ 440 (525)
. ...++..+|.++.. .+++++|+.+++++++.. ....+..++......+. +
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----
T ss_pred HhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH
Confidence 2 25678899999998 899999999999998752 13355566665555443 3
Q ss_pred HHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 441 GKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 441 ~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
.++..+++..... ....++.++|.++.. .+++++|+.+|+++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 235 GEYGSWYKACKVDSPTVNTTLRSLGALYRR----------------QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp --------CCCCCCHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHh
Confidence 3343333333222 356688999999988 77899999999999864
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.56 E-value=1.6e-13 Score=123.13 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHH----------------HHHHHHcCCCCCCCHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEF----------------LGEIYARGAGVERNYTKA 302 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~----------------Lg~~y~~g~~~~~~~~~A 302 (525)
.++.++..|..+. ..+++++|+.+|+++++. +++.+++. +|.+|.. .+++++|
T Consensus 3 ~~~~~~~~g~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A 73 (208)
T 3urz_A 3 SVDEMLQKVSAAI-----EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK----NRNYDKA 73 (208)
T ss_dssp CHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH----CCCHHHH
Confidence 5677888888873 568999999999999986 56788999 9999999 9999999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcC--CHHHHH
Q 009801 303 LEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR--DVKLAC 376 (525)
Q Consensus 303 ~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~--~~~~A~ 376 (525)
+.+|+++++.. ++.+++.+|.++.. .|++++|+.+|+++++. +++.+++++|.+|.. .+ +...+.
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~~~~~~~~~~ 144 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVC-----RGQEKDALRMYEKILQLEADNLAANIFLGNYYYL----TAEQEKKKLE 144 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----HhHHHHHHHH
Confidence 99999999864 89999999999987 67999999999999876 688999999999876 43 456677
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh
Q 009801 377 KYFLVAANAGH-QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (525)
Q Consensus 377 ~~~~~a~~~~~-~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (525)
..|+++..... ..+++++|..+.. .+++++|+.+|+++++..|.
T Consensus 145 ~~~~~~~~~~~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 145 TDYKKLSSPTKMQYARYRDGLSKLF----TTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHC---CCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCC
Confidence 88888765533 3467888988887 89999999999999999874
No 87
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.54 E-value=1.2e-14 Score=141.37 Aligned_cols=298 Identities=12% Similarity=0.085 Sum_probs=147.5
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
.++.++|.+++++. +++.++..||..+...+++++|++.|.++-.. ......+...
T Consensus 16 ~~~ld~A~~fae~~---~~~~vWs~La~A~l~~g~~~eAIdsfika~D~---------------------~~y~~V~~~a 71 (449)
T 1b89_A 16 IGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP---------------------SSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC---CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH---------------------HHHHHHHHHH
Confidence 56789999999998 56679999999999999999999999875211 1233445566
Q ss_pred hccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCH
Q 009801 221 KSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
...|++++|+++++.+.+. .++.....|+.+|.+. +++.++..+++. .+..++..+|..+.. .|.+
T Consensus 72 e~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Kl-----g~l~e~e~f~~~----pn~~a~~~IGd~~~~----~g~y 138 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKKARESYVETELIFALAKT-----NRLAELEEFING----PNNAHIQQVGDRCYD----EKMY 138 (449)
T ss_dssp ------------------------------------------CHHHHTTTTTC----C--------------------CT
T ss_pred HhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHh-----CCHHHHHHHHcC----CcHHHHHHHHHHHHH----cCCH
Confidence 7789999999999887654 4567788899999877 499998888853 455699999999999 9999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 300 TKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 300 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
++|..+|.++ +.+..|+.++.. .|++++|++.++++ +++.+|..+..++.. .++++.|....
T Consensus 139 eeA~~~Y~~a------~n~~~LA~~L~~-----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~----~~ef~lA~~~~ 200 (449)
T 1b89_A 139 DAAKLLYNNV------SNFGRLASTLVH-----LGEYQAAVDGARKA---NSTRTWKEVCFACVD----GKEFRLAQMCG 200 (449)
T ss_dssp TTHHHHHHHT------TCHHHHHHHHHT-----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHH----TTCHHHHHHTT
T ss_pred HHHHHHHHHh------hhHHHHHHHHHH-----hccHHHHHHHHHHc---CCchhHHHHHHHHHH----cCcHHHHHHHH
Confidence 9999999987 467889999987 67999999999999 589999999999999 99999997766
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHH--hcCCHHHHHHHHHHHHHc--
Q 009801 380 LVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESY--LKGDVGKAFLLYSRMAEL-- 453 (525)
Q Consensus 380 ~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~--~~g~~~~A~~~~~~a~~~-- 453 (525)
.. +. .+++-...+..+|.. .|.+++|+.++++++..+ +...+..+|.++. ..++..+.++.|...+..
T Consensus 201 l~-L~-~~ad~l~~lv~~Yek----~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 201 LH-IV-VHADELEELINYYQD----RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TT-TT-TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HH-HH-hCHhhHHHHHHHHHH----CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 54 22 566666778888998 999999999999999886 4566777776554 345777777777544322
Q ss_pred -----ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH--------------hCCCHHHHHHHHHHH
Q 009801 454 -----GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--------------EQGNEHAALLIGDAY 514 (525)
Q Consensus 454 -----~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--------------~~~~~~a~~~lg~~y 514 (525)
.+...|..+..+|.++ ++++.|+....+.. ...+.+.+|+....|
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~----------------~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fy 338 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKY----------------EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 338 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHT----------------TCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------------chHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHH
Confidence 3456788899999884 45666766554432 345788888888877
Q ss_pred H
Q 009801 515 Y 515 (525)
Q Consensus 515 ~ 515 (525)
.
T Consensus 339 l 339 (449)
T 1b89_A 339 L 339 (449)
T ss_dssp H
T ss_pred H
Confidence 6
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.54 E-value=1e-12 Score=122.29 Aligned_cols=187 Identities=18% Similarity=0.109 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--- 385 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 385 (525)
++..++.+|..+.. .+++++|+..|+++++. ++ +.+++.+|.+|.. .+++++|+..|+++++.
T Consensus 14 ~~~~~~~~a~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 14 SPQEAFERAMEFYN-----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp SHHHHHHHHHHHHH-----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHCCC
Confidence 44455555555544 33555555555555543 22 4455555555555 55555555555555544
Q ss_pred --CCHHHHHHHHHHHHcCC----CCcCCHHHHHHHHHHHHHcCC--h---HH--------------HHHHHHHHHhcCCH
Q 009801 386 --GHQKAFYQLAKMFHTGV----GLKKNLHMATALYKLVAERGP--W---SS--------------LSRWALESYLKGDV 440 (525)
Q Consensus 386 --~~~~a~~~l~~~y~~g~----g~~~~~~~A~~~~~~a~~~~~--~---~a--------------~~~l~~~~~~~g~~ 440 (525)
..+.+++.+|.++.... -..+++++|+.+|+++++..| . .+ ++.+|.++...|++
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 12345555555554200 014566666666666666543 1 12 38899999999999
Q ss_pred HHHHHHHHHHHHc--C---hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--C---HHHHHHH
Q 009801 441 GKAFLLYSRMAEL--G---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--N---EHAALLI 510 (525)
Q Consensus 441 ~~A~~~~~~a~~~--~---~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~l 510 (525)
++|+..|+++++. + .+.+++++|.+|...|+..... ...+++++|+..|+++++.. + ..+...|
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~------~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 238 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA------RQPERYRRAVELYERLLQIFPDSPLLRTAEELY 238 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh------cccchHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 9999999999976 2 5679999999998743321100 01389999999999999854 3 4566677
Q ss_pred HHHHH
Q 009801 511 GDAYY 515 (525)
Q Consensus 511 g~~y~ 515 (525)
+.++.
T Consensus 239 ~~~~~ 243 (261)
T 3qky_A 239 TRARQ 243 (261)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.53 E-value=5.8e-14 Score=118.82 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=107.1
Q ss_pred HHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 009801 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLA 395 (525)
Q Consensus 320 ~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~ 395 (525)
.||.++.. ++++++|+..+++++.. .++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|
T Consensus 2 ~LG~~~~~-----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~p~~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRS-----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE----AKEYDLAKKYICTYINVQERDPKAHRFLG 72 (150)
T ss_dssp -----CCC-----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHH-----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35666654 66888888888888876 356677888999988 88999999999988876 6788889999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHH-HHHHHHc--ChHHHHHHHHHHHhhh
Q 009801 396 KMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLL-YSRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 396 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~-~~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
.+|.. .+++++|+.+|+++++.+| +.+++++|.++...|++++|... +++|++. +++.++...+.++...
T Consensus 73 ~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 73 LLYEL----EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHH----cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 99887 8889999999999988874 67888889888888888776654 5888775 5777887788777653
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.52 E-value=1.3e-13 Score=146.39 Aligned_cols=175 Identities=13% Similarity=0.028 Sum_probs=136.8
Q ss_pred hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHH--------c--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 009801 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA--------E--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (525)
Q Consensus 120 ~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~--------~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~ 189 (525)
+++++.+.+..| .. .+++++|++.|++++ . .++..+++.+|.++...|++++|+..|+++++
T Consensus 390 ~p~~~~a~~~~a---~~----~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~- 461 (681)
T 2pzi_A 390 DPTDVAASVLQA---TV----LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE- 461 (681)
T ss_dssp CTTSTTHHHHHH---TT----TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred CCCCcchHHhhc---cc----ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-
Confidence 567777777777 22 678899999999888 3 35778888888888888888888888888765
Q ss_pred HHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 009801 190 AVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMW 269 (525)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~ 269 (525)
.+++++.+++.+|.+|...+ ++++|+..
T Consensus 462 -----------------------------------------------~~p~~~~a~~~lg~~~~~~g-----~~~~A~~~ 489 (681)
T 2pzi_A 462 -----------------------------------------------RVGWRWRLVWYRAVAELLTG-----DYDSATKH 489 (681)
T ss_dssp -----------------------------------------------HHCCCHHHHHHHHHHHHHHT-----CHHHHHHH
T ss_pred -----------------------------------------------cCcchHHHHHHHHHHHHHcC-----CHHHHHHH
Confidence 45677888888888888774 88888888
Q ss_pred HHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 009801 270 FSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEK 345 (525)
Q Consensus 270 ~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~ 345 (525)
|+++++. +++.+++++|.+|.. .+++++ +.+|+++++.+ ++.+++++|.++.. .|++++|+.+|++
T Consensus 490 ~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 490 FTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-----EGDRVGAVRTLDE 559 (681)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHT
T ss_pred HHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH-----cCCHHHHHHHHHh
Confidence 8888765 677888888888888 888888 88888887753 77788888888876 5688888888888
Q ss_pred HHhC--CChhHHHHHHHHHHc
Q 009801 346 AADN--EEAGGHYNLGVMYYK 364 (525)
Q Consensus 346 a~~~--~~~~a~~~lg~~y~~ 364 (525)
+++. +++.+++++|.++..
T Consensus 560 al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 560 VPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp SCTTSTTHHHHHHHHHHHTC-
T ss_pred hcccCcccHHHHHHHHHHHHc
Confidence 8765 456777788888765
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.51 E-value=9.5e-14 Score=147.45 Aligned_cols=176 Identities=12% Similarity=-0.014 Sum_probs=153.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--------h--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA--------D--KGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~--------~--~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
+++++.+.+..| ... +++++|+..|++++ + .+++.+++.+|.+|.. .+++++|+..|+
T Consensus 390 ~p~~~~a~~~~a---~~~-----~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~ 457 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVL-----SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD----LGDVAKATRKLD 457 (681)
T ss_dssp CTTSTTHHHHHH---TTT-----CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH----HTCHHHHHHHHH
T ss_pred CCCCcchHHhhc---ccc-----cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh----cCCHHHHHHHHH
Confidence 456777777766 222 59999999999999 4 3678999999999999 999999999999
Q ss_pred HHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 308 HAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383 (525)
Q Consensus 308 ~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~ 383 (525)
++++. +++.+++++|.++.. .+++++|+..|+++++. +++.+++++|.+|.. .+++++ +.+|++++
T Consensus 458 ~al~~~p~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al 527 (681)
T 2pzi_A 458 DLAERVGWRWRLVWYRAVAELL-----TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVW 527 (681)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHH
Confidence 99875 589999999999987 67999999999999876 689999999999999 999999 99999999
Q ss_pred Hc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCC
Q 009801 384 NA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGD 439 (525)
Q Consensus 384 ~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~ 439 (525)
+. ++..+++++|.++.. .+++++|+.+|+++++.++ ..+++++|.++...++
T Consensus 528 ~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 528 STNDGVISAAFGLARARSA----EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 87 689999999999998 9999999999999999986 5788899998877665
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=1.7e-12 Score=113.18 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGH 355 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 355 (525)
..+..+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++. .++.++
T Consensus 9 ~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~ 79 (186)
T 3as5_A 9 VYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-----TGAVDRGTELLERSLADAPDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 344555555555 55555555555555443 245555555555544 33555555555555443 344455
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWA 431 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~ 431 (525)
..+|.++.. .+++++|+.+++++++. .++.++..+|.++.. .+++++|+.+++++++..+ ..++..+|
T Consensus 80 ~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 80 TVLGLTYVQ----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 555555555 55555555555555543 344455555555554 5555555555555554432 34444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 009801 432 LESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.++...|++++|+.+++++++
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555544
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=1.3e-12 Score=113.96 Aligned_cols=159 Identities=17% Similarity=0.151 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSA 317 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 317 (525)
..+++.+|.++ ...+++++|+.+++++++. .++.++..+|.++.. .+++++|+.+++++++. .++.+
T Consensus 8 ~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 78 (186)
T 3as5_A 8 QVYYRDKGISH-----AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK----TGAVDRGTELLERSLADAPDNVKV 78 (186)
T ss_dssp HHHHHHHHHHH-----HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHH-----HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHH
Confidence 56788888887 4568999999999999875 678999999999999 99999999999999886 47899
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQ 393 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 393 (525)
+..+|.++.. .+++++|+.+++++++. .++.++..+|.++.. .+++++|+.+++++++. .++.++..
T Consensus 79 ~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (186)
T 3as5_A 79 ATVLGLTYVQ-----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRA 149 (186)
T ss_dssp HHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHH-----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 9999999987 56999999999999876 578899999999999 99999999999999987 57899999
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
+|.++.. .+++++|+.+++++++..
T Consensus 150 la~~~~~----~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 150 IAFSYEQ----MGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence 9999998 999999999999998764
No 94
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.50 E-value=2e-12 Score=123.42 Aligned_cols=212 Identities=13% Similarity=0.076 Sum_probs=158.2
Q ss_pred ccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009801 172 RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLF 251 (525)
Q Consensus 172 ~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~ 251 (525)
..+++++|.++++++.+..+.. ++...+++++|+..|.++ |.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-------------------------~~~~~~~~~~A~~~~~~a------------~~~ 45 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-------------------------FMKWKPDYDSAASEYAKA------------AVA 45 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-------------------------SSSCSCCHHHHHHHHHHH------------HHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-------------------------ccCCCCCHHHHHHHHHHH------------HHH
Confidence 4567788888888876643210 111146788888887764 456
Q ss_pred HHhcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----CC----H
Q 009801 252 YYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----Y 315 (525)
Q Consensus 252 y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~ 315 (525)
|... +++++|+.+|+++++. ++ +.++.++|.+|.. .+++++|+.+|+++++. ++ .
T Consensus 46 ~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 46 FKNA-----KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHT-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6655 4999999999998865 23 4578889999998 89999999999999865 22 4
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-- 385 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-- 385 (525)
.++.++|.+|.. +++++|+.+|++|++. ++ +.++.++|.+|.. .+++++|+.+|+++++.
T Consensus 117 ~~~~~lg~~~~~------g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 117 MALDRAGKLMEP------LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Confidence 678899999953 5999999999999865 22 4678899999999 99999999999999875
Q ss_pred --CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhcCCHHHHHH
Q 009801 386 --GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-------SSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 386 --~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-------~a~~~l~~~~~~~g~~~~A~~ 445 (525)
+. ..++..+|.++.. .+++++|+.+|++++ ..|. .....++.. +..|+.+.+..
T Consensus 187 ~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~-~~~~d~~~~~~ 253 (307)
T 2ifu_A 187 EMENYPTCYKKCIAQVLVQLH----RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQA-YDEQDEEQLLR 253 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HcCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHH-HHhcCHHHHHH
Confidence 22 3477788888887 899999999999999 7642 123344443 36677655444
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.49 E-value=8.6e-14 Score=117.78 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=93.8
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHH
Q 009801 284 FLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG 359 (525)
Q Consensus 284 ~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 359 (525)
.||.++.. .++.++|+..+++++... ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|
T Consensus 2 ~LG~~~~~----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-----~~~~~~A~~~~~~al~~~p~~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRS----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-----AKEYDLAKKYICTYINVQERDPKAHRFLG 72 (150)
T ss_dssp -----CCC----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHH----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35666666 777777777777776543 45566777777776 45777777777777655 5677777778
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHH-HHHHHHHcCC--hHHHHHHHHHH
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATA-LYKLVAERGP--WSSLSRWALES 434 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~-~~~~a~~~~~--~~a~~~l~~~~ 434 (525)
.+|.. .+++++|+..|+++++. +++.+++++|.+|.. .+++++|.. ++++|++.+| +.++...+.++
T Consensus 73 ~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 73 LLYEL----EENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHH----cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 77777 77788888888777766 567777777777776 666665554 4577777764 45555666666
Q ss_pred HhcCC
Q 009801 435 YLKGD 439 (525)
Q Consensus 435 ~~~g~ 439 (525)
..+|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 66654
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.47 E-value=7.1e-13 Score=126.63 Aligned_cols=189 Identities=14% Similarity=0.088 Sum_probs=122.6
Q ss_pred cCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHH
Q 009801 223 RGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKA 302 (525)
Q Consensus 223 ~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A 302 (525)
.|++++|.++++++...... + + ....+++++|+.+|.++ |.+|.. .+++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~------~--~----~~~~~~~~~A~~~~~~a------------~~~~~~----~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT------S--F----MKWKPDYDSAASEYAKA------------AVAFKN----AKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------C--S----SSCSCCHHHHHHHHHHH------------HHHHHH----TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHccc------c--c----cCCCCCHHHHHHHHHHH------------HHHHHH----cCCHHHH
Confidence 45667777777766543110 0 1 12236777777777765 446666 7788888
Q ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCC
Q 009801 303 LEWLTHAARQQ--------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGI 366 (525)
Q Consensus 303 ~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~ 366 (525)
+.+|+++++.. ...++.++|.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|..
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-----~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-- 128 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD-----LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-- 128 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--
Confidence 88888776542 24466777777766 56777777777777654 22 3456677777742
Q ss_pred CCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHH
Q 009801 367 GVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRW 430 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l 430 (525)
+++++|+.+|+++++. ++ ..++.++|.+|.. .+++++|+.+|+++++.. . ..++..+
T Consensus 129 ---g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 129 ---LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 6777777777777754 11 4566777777776 777777777777777642 1 2355566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 431 ALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
|.++...|++++|+.+|++++ ..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CC
Confidence 777777777777777777777 54
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.41 E-value=1.4e-11 Score=111.77 Aligned_cols=178 Identities=11% Similarity=-0.046 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-- 313 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-- 313 (525)
.+.+++.+|..+ ...+++++|+..|+++++. ++ +.+++.+|.+|.. .+++++|+..|+++++..
T Consensus 3 ~~~~~~~~a~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 3 PPNEIYATAQQK-----LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp CHHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcC
Confidence 466778888777 3467888888888888874 22 3678888888888 888888888888888753
Q ss_pred C---HHHHHHHHHHHHhC-------------CCCCccCHHHHHHHHHHHHhC--CChhHHH---HHHHHHHcCCCCcCCH
Q 009801 314 L---YSAYNGIGYLYVKG-------------YGVEKKNYTKAKEYFEKAADN--EEAGGHY---NLGVMYYKGIGVKRDV 372 (525)
Q Consensus 314 ~---~~a~~~lg~~~~~g-------------~~~~~~~~~~A~~~~~~a~~~--~~~~a~~---~lg~~y~~g~~~~~~~ 372 (525)
+ +.+++.+|.++... .....+++++|+..|+++++. +++.+.. .++.+...
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-------- 145 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-------- 145 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH--------
Confidence 2 24778888887541 001134566666666666554 2222221 11111110
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHH
Q 009801 373 KLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 373 ~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
.......+|.+|.. .+++++|+..|+++++..| +.+++.+|.++..+|++++|+..+
T Consensus 146 --------------~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 146 --------------LAKYEYSVAEYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp --------------HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 01223577888887 8999999999999999864 357899999999999999999999
Q ss_pred HHHHHc
Q 009801 448 SRMAEL 453 (525)
Q Consensus 448 ~~a~~~ 453 (525)
+++...
T Consensus 208 ~~l~~~ 213 (225)
T 2yhc_A 208 KIIAAN 213 (225)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988765
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.38 E-value=4.8e-11 Score=108.27 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=137.0
Q ss_pred chhhhhHhhhccCCcHHHHHHHHHHHHc--CC---HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCH---HH
Q 009801 212 AEENKGALRKSRGEDDEAFQILEYQAQK--GN---AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP---QS 281 (525)
Q Consensus 212 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~---~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~---~a 281 (525)
....++..+...|++++|+..|++++.. .+ +.+++.+|.+|...+ ++++|+..|+++++. +++ .+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~-----~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-----DLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3567788899999999999999998774 44 479999999999884 999999999999975 333 48
Q ss_pred HHHHHHHHHcC--------------CCCCCCHHHHHHHHHHHHHcC--CH---HHHHHHHHHHHhCCCCCccCHHHHHHH
Q 009801 282 MEFLGEIYARG--------------AGVERNYTKALEWLTHAARQQ--LY---SAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (525)
Q Consensus 282 ~~~Lg~~y~~g--------------~~~~~~~~~A~~~~~~a~~~~--~~---~a~~~lg~~~~~g~~~~~~~~~~A~~~ 342 (525)
++.+|.++... ....+++++|+..|+++++.. ++ .+...++.+...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~--------------- 145 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR--------------- 145 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---------------
Confidence 99999998751 011468999999999999863 32 233333332211
Q ss_pred HHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH---HHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 343 FEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ---KAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 343 ~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
.....+.+|.+|.. .+++.+|+..|+++++. +++ .+++.+|.+|.. .+++++|+..+++
T Consensus 146 --------~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 146 --------LAKYEYSVAEYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ----MQMNAQAEKVAKI 209 (225)
T ss_dssp --------HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH----cCCcHHHHHHHHH
Confidence 11234678999999 99999999999999987 343 689999999998 9999999999998
Q ss_pred HHHcCC
Q 009801 418 VAERGP 423 (525)
Q Consensus 418 a~~~~~ 423 (525)
+....+
T Consensus 210 l~~~~~ 215 (225)
T 2yhc_A 210 IAANSS 215 (225)
T ss_dssp HHHCCS
T ss_pred HHhhCC
Confidence 887754
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.37 E-value=1.4e-11 Score=100.54 Aligned_cols=105 Identities=15% Similarity=0.020 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
+++.++|..|.. .+++++|+.+|+++++.+| +.+++++|.++..+|++++|+..++++++. .++.+++++|.
T Consensus 14 ~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 334444444444 4455555555555544432 344444555555555555555555555443 24445555555
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDA 513 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 513 (525)
++.. .+++++|+.+|+++++.+ ++++...|+.|
T Consensus 90 ~~~~----------------~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 90 CLVA----------------MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH----------------CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 5544 334455555555554432 44454444443
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.36 E-value=1.4e-11 Score=100.49 Aligned_cols=108 Identities=18% Similarity=0.070 Sum_probs=91.4
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
.+.++.++|..|.. .+++++|+..|+++++. .++.+++++|.+|.. .+++++|+..|+++++.++ ..+
T Consensus 12 ~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 12 LAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK----LMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh----hccHHHHHHHHHHHHHhhhhhhHH
Confidence 34567788999998 89999999999998876 578888999999987 8899999999999988864 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
++++|.++..+|++++|+..|+++++. +++.++.+++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 889999999999999999999999876 5777888887653
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.36 E-value=1.1e-11 Score=107.69 Aligned_cols=159 Identities=8% Similarity=-0.085 Sum_probs=97.2
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC-CHH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-NIQ 161 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-~~~ 161 (525)
.+..+.+|..++. .+++++|+..|+++ .+|+++.+++.+|.+|.. .+++++|+..|++++... ++.
T Consensus 6 ~~~~~~~a~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~ 74 (176)
T 2r5s_A 6 DEQLLKQVSELLQ-------QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE----TKQFELAQELLATIPLEYQDNS 74 (176)
T ss_dssp CTTHHHHHHHHHH-------TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH----TTCHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHhhhccCChH
Confidence 4455666666655 56667777777663 466666777777776666 666677776666665432 333
Q ss_pred HHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 162 SKMAVAYTYL-RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 162 a~~~la~~y~-~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
....++.+.. ...+..+|+..|+++++ .+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~------------------------------------------------~~P~ 106 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELA------------------------------------------------ANPD 106 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHH------------------------------------------------HSTT
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHH------------------------------------------------hCCC
Confidence 3333332211 11111123333333322 3456
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
++.+++.+|.++...+ ++++|+..|+++++.+ ++.++..+|.++.. .|+.++|+..|++++.
T Consensus 107 ~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 107 NFELACELAVQYNQVG-----RDEEALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcHHHHHHHHHH
Confidence 7788888888887774 8888888888887753 24577888888887 7788888888887754
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.35 E-value=1.1e-11 Score=129.10 Aligned_cols=155 Identities=12% Similarity=-0.002 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC
Q 009801 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~ 371 (525)
.+++++|+.+|+++++. ++..++..+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|.. .++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELG-----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT----QQR 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH----TTC
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCC
Confidence 57889999999998865 478899999999987 77999999999999876 567888999999999 899
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhc---CCHHHHH
Q 009801 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLK---GDVGKAF 444 (525)
Q Consensus 372 ~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~---g~~~~A~ 444 (525)
+++|+.+|+++++. +++.++.++|.++.. .+++++|+.+|+++++.++ ..++..+|.++... |++++|+
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999999876 578889999999987 8899999999999988864 67788899999999 9999999
Q ss_pred HHHHHHHHcC--hHHHHHHHH
Q 009801 445 LLYSRMAELG--YEVAQSNAA 463 (525)
Q Consensus 445 ~~~~~a~~~~--~~~a~~~la 463 (525)
..++++++.+ +..++..++
T Consensus 149 ~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 149 AQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHhcCCcccChHHHhC
Confidence 9999998874 334444444
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.32 E-value=1.3e-11 Score=107.28 Aligned_cols=157 Identities=9% Similarity=-0.054 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHY 356 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~ 356 (525)
...+.+|..+.. .+++++|+..|+++++. +++.+++.+|.++.. .|++++|+..+++++... ++....
T Consensus 7 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-----~g~~~~A~~~~~~a~~~~p~~~~~~ 77 (176)
T 2r5s_A 7 EQLLKQVSELLQ----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE-----TKQFELAQELLATIPLEYQDNSYKS 77 (176)
T ss_dssp TTHHHHHHHHHH----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-----TTCHHHHHHHHTTCCGGGCCHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHhhhccCChHHHH
Confidence 346677888888 88889999888888654 588888888888876 568889999888887654 344444
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----hHHHHHH
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WSSLSRW 430 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l 430 (525)
.++.+...+ ..+..+|+..++++++. +++.+++.+|.++.. .+++++|+..|+++++.+| ..++..+
T Consensus 78 ~~~~~~~~~---~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 78 LIAKLELHQ---QAAESPELKRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHHHHHHHH---HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred HHHHHHHHh---hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 445443220 22333578888888876 578899999999987 8999999999999998874 3488899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009801 431 ALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
|.++...|+.++|+..|++++.
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999988865
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.32 E-value=3.9e-11 Score=113.21 Aligned_cols=160 Identities=13% Similarity=-0.067 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--C
Q 009801 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E 351 (525)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~ 351 (525)
.+++.+++.+|..+.. .|++++|+..|+++++. +++.++..+|.++.. .|++++|+..+++++... .
T Consensus 114 p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-----~g~~~~A~~~l~~~~~~~p~~ 184 (287)
T 3qou_A 114 PREEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-----LNRSEDAEAVLXTIPLQDQDT 184 (287)
T ss_dssp CCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-----TTCHHHHHHHHTTSCGGGCSH
T ss_pred CCchhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-----CCCHHHHHHHHHhCchhhcch
Confidence 4556677777777777 77888888888887765 377778888887776 557888888887776542 2
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----hH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WS 425 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~ 425 (525)
.......+..+.. .++..+|+..|+++++. +++.+++++|.++.. .+++++|+..|++++..+| ..
T Consensus 185 ~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 185 RYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp HHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred HHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcccccccch
Confidence 3334455555666 66777788888887765 677888888888877 7888888888888887764 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++.+++.++...|+.++|...|++++.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 777888888888888888888887764
No 105
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.31 E-value=1.6e-10 Score=109.44 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---CC
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA----G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER---GP 423 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~---~~ 423 (525)
++.+|.+|.. .+++++|+.+|+++++. . ...+++++|.+|.. .+++++|+.+|+++++. .+
T Consensus 118 ~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~ 189 (293)
T 2qfc_A 118 QYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALH 189 (293)
T ss_dssp HHHHHHHHHT----SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcC
Confidence 3456666666 67777777777777643 1 14567777777776 77888888888887732 21
Q ss_pred ------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHH
Q 009801 424 ------WSSLSRWALESYLKGDVGKAFLLYSRMAELG--------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (525)
Q Consensus 424 ------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (525)
..+++++|.++..+|++++|+.+++++++.. ...+++++|.++.. .++++
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~----------------~g~~~ 253 (293)
T 2qfc_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----------------LEYEE 253 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH----------------TTCCH
T ss_pred ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----------------cCCcH
Confidence 1577788888888888888888888887652 26678888888887 55678
Q ss_pred HH-HHHHHHHHh
Q 009801 490 CA-HSLWWQASE 500 (525)
Q Consensus 490 ~A-~~~~~~a~~ 500 (525)
+| ..+|++|+.
T Consensus 254 ~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 254 AEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 88 777888774
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.31 E-value=3e-11 Score=125.77 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=125.0
Q ss_pred ccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccC
Q 009801 260 RRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKN 335 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~ 335 (525)
.+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. ++.++..+|.++.. .++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~ 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-----QQR 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-----TTC
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCC
Confidence 46899999999999875 678999999999999 999999999999999874 78999999999987 579
Q ss_pred HHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc---CCH
Q 009801 336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK---KNL 408 (525)
Q Consensus 336 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~---~~~ 408 (525)
+++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++. ++..++.+++.++.. . +++
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~g~~ 144 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR----LCDWRAL 144 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCTTH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhccccH
Confidence 99999999999876 578899999999999 99999999999999987 678999999999997 7 999
Q ss_pred HHHHHHHHHHHHcCC--hHHHHHHH
Q 009801 409 HMATALYKLVAERGP--WSSLSRWA 431 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~--~~a~~~l~ 431 (525)
++|+..++++++.++ ..++..++
T Consensus 145 ~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 145 DVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHhcCCcccChHHHhC
Confidence 999999999999875 34555554
No 107
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.30 E-value=1.2e-10 Score=110.25 Aligned_cols=157 Identities=9% Similarity=-0.023 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-- 349 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-- 349 (525)
..+...+..+.. .+++++|+.+++++++.. . ...++.+|.++.. .+++++|+.+++++++.
T Consensus 76 ~~l~~~~~~~~~----~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 76 KQFKDQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-----KVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH----hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHh
Confidence 345566777777 899999999999998753 2 2345667777765 56999999999999864
Q ss_pred --CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 350 --EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-----GH----QKAFYQLAKMFHTGVGLKKNLHMATAL 414 (525)
Q Consensus 350 --~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~ 414 (525)
.+ ..+++++|.+|.. .+++++|+.+|+++++. ++ ..+++++|.+|.. .+++++|+.+
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~ 218 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQ 218 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHH
Confidence 12 4588999999999 99999999999999843 22 2689999999998 9999999999
Q ss_pred HHHHHHcCC--------hHHHHHHHHHHHhcCCHHHH-HHHHHHHHHc
Q 009801 415 YKLVAERGP--------WSSLSRWALESYLKGDVGKA-FLLYSRMAEL 453 (525)
Q Consensus 415 ~~~a~~~~~--------~~a~~~l~~~~~~~g~~~~A-~~~~~~a~~~ 453 (525)
++++++..+ ..+++++|.++..+|++++| ..+|++|+..
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999987631 56889999999999999999 8889999864
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.28 E-value=7e-11 Score=111.50 Aligned_cols=162 Identities=9% Similarity=-0.056 Sum_probs=139.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
.-++++++++.+|..+...+ ++++|+..|++++.. +++.+++.||.++.. .+++++|+..|++++...
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQES-----NYTDALPLLXDAWQLSNQNGEIGLLLAETLIA----LNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH----TTCHHHHHHHHTTSCGGGC
T ss_pred HcCCchhhHHHHHHHHHhCC-----CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH----CCCHHHHHHHHHhCchhhc
Confidence 44788999999999998884 999999999999864 789999999999999 999999999999997654
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC-
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH- 387 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~- 387 (525)
........+..+.. .++.++|+..|+++++. +++.+++++|.+|.. .+++++|+..|+++++. ++
T Consensus 183 ~~~~~~~~~~~~l~~-----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 183 DTRYQGLVAQIELLX-----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp SHHHHHHHHHHHHHH-----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTGG
T ss_pred chHHHHHHHHHHHHh-----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcccccc
Confidence 33344444444443 34677899999999865 689999999999999 99999999999999987 34
Q ss_pred -HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 388 -QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE 420 (525)
Q Consensus 388 -~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~ 420 (525)
..++.+++.++.. .++.++|+..|++++.
T Consensus 254 ~~~a~~~l~~~~~~----~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 DGQTRXTFQEILAA----LGTGDALASXYRRQLY 283 (287)
T ss_dssp GGHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH----cCCCCcHHHHHHHHHH
Confidence 7899999999997 8999999999999875
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.26 E-value=2e-09 Score=101.41 Aligned_cols=218 Identities=9% Similarity=0.014 Sum_probs=166.5
Q ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHH----HcCCCCCCC
Q 009801 227 DEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIY----ARGAGVERN 298 (525)
Q Consensus 227 ~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y----~~g~~~~~~ 298 (525)
++|++.+.++ .+|.+..+++..+.+....+ . .++++++.++.+++.. .+..+++..+.++ ... +..++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~-~--~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l-~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLP-N--RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN-NNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCT-T--SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT-TTCCC
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcc-c--ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc-cccCC
Confidence 3455555444 44577888888888887651 0 3899999999998875 6778888888888 441 11268
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHH--HHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC-
Q 009801 299 YTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYT--KAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD- 371 (525)
Q Consensus 299 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~--~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~- 371 (525)
+++++.++.++++.. +..++...+.+... .+.++ +++.++.++++. .+..|+...+.+... .+.
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~-----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~----l~~~ 196 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDT-----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS----KKHL 196 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS----SGGG
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cccc
Confidence 899999999998875 88899999988875 23555 899999999876 577899999999887 665
Q ss_pred -----HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCC
Q 009801 372 -----VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----PWSSLSRWALESYLKGD 439 (525)
Q Consensus 372 -----~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~~~~~g~ 439 (525)
+++++.++.+++.. ++..++++++.++... .+..+....++.++++.+ .+.++..++.++...|+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF---DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT---TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc---CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 88999999999876 7889999999988772 233555666777776654 57788899999999999
Q ss_pred HHHHHHHHHHHHH-cChHHHHH
Q 009801 440 VGKAFLLYSRMAE-LGYEVAQS 460 (525)
Q Consensus 440 ~~~A~~~~~~a~~-~~~~~a~~ 460 (525)
.++|+++|+++++ .+...+-+
T Consensus 274 ~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 274 YNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHHhccChHHHHH
Confidence 9999999999987 45544433
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.25 E-value=1.7e-10 Score=103.34 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQL 394 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l 394 (525)
.++.+|..+.. .+++++|+.+|+++++. ++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++
T Consensus 8 ~~~~~g~~~~~-----~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l 77 (213)
T 1hh8_A 8 SLWNEGVLAAD-----KKDWKGALDAFSAVQDP-HSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHH-----hCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 35666666665 45777777777777633 66777788888877 78888888888887765 567777888
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCCh------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGPW------------------SSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------------------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
|.+|.. .+++++|+.+|+++++..+. .+++.+|.++...|++++|+.+++++++..
T Consensus 78 g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 78 GMLYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHH----cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888876 77888888888888775432 678888888888888888888888888763
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.25 E-value=5e-11 Score=100.35 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=87.1
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
+++.+++.+|.++.. .+++++|+..|+++++. +++.+++++|.++.. .+++++|+..|+++++.+| +.
T Consensus 34 ~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYN----KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI----KEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCCCCcH
Confidence 356788999999999 99999999999999877 678999999999998 8999999999999998874 78
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+++++|.++..+|++++|+.+|+++++..
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999874
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.25 E-value=3.3e-10 Score=107.17 Aligned_cols=152 Identities=9% Similarity=-0.015 Sum_probs=124.0
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHH------HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC-
Q 009801 285 LGEIYARGAGVERNYTKALEWLTHAARQQ--LYS------AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE- 351 (525)
Q Consensus 285 Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~------a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~- 351 (525)
....+.. .+++++|+.+++++++.. .+. .+..+|.++.. .+++++|+.+|+++++. .+
T Consensus 81 ~i~~~~~----~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 81 QVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-----KVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-----SSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHHHHH----HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-----ccCHHHHHHHHHHHHHHhcccccH
Confidence 3555666 889999999999998753 222 33457777754 56999999999999974 22
Q ss_pred ---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----C----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 352 ---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-----G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 352 ---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
..++.++|.+|.. .+++++|+.+|+++++. + ...+++++|.+|.. .+++++|+.++++++
T Consensus 152 ~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 152 YQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAI 223 (293)
T ss_dssp THHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHH
Confidence 3378999999999 99999999999999952 1 34588999999998 999999999999998
Q ss_pred HcC--------ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 009801 420 ERG--------PWSSLSRWALESYLKG-DVGKAFLLYSRMAEL 453 (525)
Q Consensus 420 ~~~--------~~~a~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 453 (525)
+.. ...+++++|.++..+| ++++|+.+|++|+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 763 1678899999999999 579999999999864
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.23 E-value=1.2e-09 Score=103.24 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=120.0
Q ss_pred ccCHHHHHHHHHHHHhCC--Chh------HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHH
Q 009801 333 KKNYTKAKEYFEKAADNE--EAG------GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAK 396 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~--~~~------a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~ 396 (525)
.+++++|+.+++++++.. .+. .+..+|.+|.. .+++++|+.+|+++++. ++ ..++.++|.
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT----SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 459999999999998753 222 23358999988 89999999999999984 22 447899999
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHc-----CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------hHHHH
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAER-----GP----WSSLSRWALESYLKGDVGKAFLLYSRMAELG--------YEVAQ 459 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------~~~a~ 459 (525)
+|.. .+++++|+.+|+++++. .+ ..+++++|.++..+|++++|+.++++|++.. -+.++
T Consensus 164 ~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 164 IYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9998 99999999999999952 11 4578899999999999999999999998651 27799
Q ss_pred HHHHHHHhhhCCCccccCCCCCCCChH-hHHHHHHHHHHHHh
Q 009801 460 SNAAWILDKYGEGSMCMGESGFCTDAE-RHQCAHSLWWQASE 500 (525)
Q Consensus 460 ~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~ 500 (525)
+++|.++.. .+ ++++|+.+|++|++
T Consensus 240 ~~lg~~~~~----------------~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRK----------------LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHH----------------TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------hCCcHHHHHHHHHHHHH
Confidence 999999998 44 47999999999985
No 114
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.22 E-value=1.8e-10 Score=94.07 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh---------H
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGY---------E 456 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------~ 456 (525)
+.++.++|..+.. .+++++|+.+|++|++.+| +.++.++|.++..+|++++|+..++++++... .
T Consensus 8 A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 4567789999988 8999999999999999875 67888999999999999999999999987631 3
Q ss_pred HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 009801 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDA 513 (525)
Q Consensus 457 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~ 513 (525)
.++.++|.++.. .+++++|+.+|+++++.. +++....|..+
T Consensus 84 ~~~~~lg~~~~~----------------~~~~~~A~~~~~kal~~~~~~~~~~~l~~l 125 (127)
T 4gcn_A 84 KAMSRAGNAFQK----------------QNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence 477888888887 678999999999999754 77777666543
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.22 E-value=2e-10 Score=102.89 Aligned_cols=125 Identities=18% Similarity=0.107 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW 430 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l 430 (525)
..++.+|.++.. .+++++|+..|+++++ .++.+++++|.+|.. .+++++|+.+|+++++.++ ..+++.+
T Consensus 7 ~~~~~~g~~~~~----~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l 77 (213)
T 1hh8_A 7 ISLWNEGVLAAD----KKDWKGALDAFSAVQD-PHSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHcC-CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 356889999999 9999999999999874 378999999999998 9999999999999999864 7789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC------------------hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHH
Q 009801 431 ALESYLKGDVGKAFLLYSRMAELG------------------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAH 492 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~~------------------~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 492 (525)
|.++...|++++|+.+|+++++.. .+.+++++|.++.. .+++++|+
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~ 141 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----------------KEEWKKAE 141 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----------------TTCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----------------ccCHHHHH
Confidence 999999999999999999999852 34899999999998 77899999
Q ss_pred HHHHHHHhCC
Q 009801 493 SLWWQASEQG 502 (525)
Q Consensus 493 ~~~~~a~~~~ 502 (525)
.+|+++++..
T Consensus 142 ~~~~~al~~~ 151 (213)
T 1hh8_A 142 EQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHcC
Confidence 9999999875
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.22 E-value=3.5e-09 Score=99.73 Aligned_cols=212 Identities=9% Similarity=-0.036 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHH----HhCCCC
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER--NYTKALEWLTHAARQQ--LYSAYNGIGYLY----VKGYGV 331 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~----~~g~~~ 331 (525)
..++|+..+.+++.. ++..+++..+.++.. .+ ++++++.++.+++..+ +..++...+.++ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~----l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l-~- 121 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKN----LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN-N- 121 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT-T-
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH----cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc-c-
Confidence 557899999999876 678999999999988 66 9999999999999875 788999999888 431 1
Q ss_pred CccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHH--HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc
Q 009801 332 EKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVK--LACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 332 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~--~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~ 405 (525)
..+++++++.++.++++. .+..+++..++++.. .+.++ +++.++.++++. .+..|+.+.+.+... .
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~----l 193 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS----K 193 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS----S
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----c
Confidence 114889999999999876 578899999999998 88887 999999999987 688899999999886 4
Q ss_pred CC------HHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc-----ChHHHHHHHHHHHhhhCC
Q 009801 406 KN------LHMATALYKLVAERG--PWSSLSRWALESYLKGDVGK-AFLLYSRMAEL-----GYEVAQSNAAWILDKYGE 471 (525)
Q Consensus 406 ~~------~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~-A~~~~~~a~~~-----~~~~a~~~la~~~~~~~~ 471 (525)
+. ++++++++.+++..+ +..+++.++.++...|+..+ .....+++++. .++.++..++.++..
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~--- 270 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ--- 270 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH---
T ss_pred cccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc---
Confidence 44 999999999999987 47899999999999997555 44466666654 478999999999987
Q ss_pred CccccCCCCCCCChHhHHHHHHHHHHHHh-CCC
Q 009801 472 GSMCMGESGFCTDAERHQCAHSLWWQASE-QGN 503 (525)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~ 503 (525)
.++.++|++.|+++++ .+.
T Consensus 271 -------------~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 271 -------------QKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCG
T ss_pred -------------cCCHHHHHHHHHHHHhccCh
Confidence 6688999999999987 453
No 117
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=5.5e-10 Score=91.24 Aligned_cols=107 Identities=26% Similarity=0.346 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (525)
+++.+|.++.. .+++++|+.+++++++. .+..++..++.++.. .+++++|+.++++++...+ ..++..
T Consensus 3 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCchHHHHH
Confidence 34445555555 55555555555554443 234444455555544 4455555555555554432 334445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 430 WALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
+|.++...|++++|+.+++++++. .++.++..+|.++..
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 555555555555555555555443 234445555555544
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.21 E-value=1.5e-10 Score=97.45 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH
Q 009801 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (525)
Q Consensus 158 ~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 237 (525)
++..+++.+|..+...|++++|+..|++++. .
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~------------------------------------------------~ 65 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI------------------------------------------------Y 65 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------------H
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------------------------h
Confidence 3566777777777777777777777777754 3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
+|+++.+++.+|.+|...+ ++++|+..|+++++. +++.+++++|.+|.. .|++++|+.+|+++++..
T Consensus 66 ~P~~~~~~~~lg~~~~~~g-----~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 66 DFYNVDYIMGLAAIYQIKE-----QFQQAADLYAVAFALGKNDYTPVFHTGQCQLR----LKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHc-----cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 5566777777777777663 777777777777654 667777777777777 777777777777777664
No 119
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=8.5e-10 Score=90.08 Aligned_cols=112 Identities=29% Similarity=0.458 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHH
Q 009801 334 KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLH 409 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~ 409 (525)
+++++|+.+++++++. .++.+++.+|.++.. .+++++|+.++++++.. .++.++..+|.++.. .++++
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 86 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYD 86 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH----hcCHH
Confidence 3455555555554432 234445555555555 55555555555555543 344455555555554 55555
Q ss_pred HHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 410 MATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 410 ~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+|+.+++++++..+ ..++..+|.++...|++++|+.+++++++.
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66666555555442 445555666666666666666666655543
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.19 E-value=5.1e-11 Score=115.15 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--C---------------hhHHH
Q 009801 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E---------------AGGHY 356 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~ 356 (525)
..++++|+..|+++++. ..+.++..+|.++.. .+++++|+.+|+++++.. + +.+++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~-----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK-----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH
Confidence 34566666666666543 256667777777766 567777777777776542 2 34555
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHH
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWAL 432 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~ 432 (525)
++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++..| ..++..++.
T Consensus 201 nla~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 201 NLAMCHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 66666666 66666666666666554 355566666666655 5566666666666655543 445555566
Q ss_pred HHHhcCCHHHH
Q 009801 433 ESYLKGDVGKA 443 (525)
Q Consensus 433 ~~~~~g~~~~A 443 (525)
++...|++++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56556655555
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.18 E-value=5.3e-10 Score=102.92 Aligned_cols=188 Identities=11% Similarity=-0.008 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHH-------HHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFL-------GEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L-------g~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
.++..|.-+. . +|+..|...|.+++.. +.+.+|..+ +.++.. ..+..+++..+++++...
T Consensus 9 ~~~~~~~~~~-~-----~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~----~~r~~~a~~~~~~~l~l~p 78 (282)
T 4f3v_A 9 SLFESAVSML-P-----MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFR----AWYSRRNFGQLSGSVQISM 78 (282)
T ss_dssp HHHHHHHHHT-T-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHH----HHHTGGGTTHHHHTTTCCG
T ss_pred HHHHHHhccc-C-----CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHH----HHHHHHHHHHHHHHhcCCh
Confidence 3455555552 2 5999999999999875 678888888 677777 677788888888888731
Q ss_pred -------C---------------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCc
Q 009801 314 -------L---------------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVK 369 (525)
Q Consensus 314 -------~---------------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~ 369 (525)
+ .+....++.++.. .+++++|...|...+..+ +. +.+.+|.++.. .
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~-----~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~ 148 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAA-----QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----A 148 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHH-----HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----T
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----c
Confidence 1 3455566777765 679999999999887654 34 89999999999 9
Q ss_pred CCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C---hHHHHHHHHHHHhcCCH
Q 009801 370 RDVKLACKYFLVAANAGH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--P---WSSLSRWALESYLKGDV 440 (525)
Q Consensus 370 ~~~~~A~~~~~~a~~~~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~---~~a~~~l~~~~~~~g~~ 440 (525)
+++++|+..|+.+....+ ..+++++|.++.. .+++++|+.+|++++... | ..+.+.+|.++..+|+.
T Consensus 149 ~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN----LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp TCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 999999999998776543 3589999999998 999999999999998654 2 35889999999999999
Q ss_pred HHHHHHHHHHHHcCh
Q 009801 441 GKAFLLYSRMAELGY 455 (525)
Q Consensus 441 ~~A~~~~~~a~~~~~ 455 (525)
++|...|+++.+...
T Consensus 225 deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 225 SAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998743
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.18 E-value=3.9e-10 Score=92.04 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------ 423 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------ 423 (525)
+.++.+||..+.. .+++++|+.+|++|++. .++.++.++|.+|.. .+++++|+.+++++++.++
T Consensus 8 A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 8 AIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE----EKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hhhHHHHHHHHHHHHHhCcccchhh
Confidence 4466778888888 88888888888888776 567788888888887 7888888888888887642
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 ---WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 ---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..++.++|.++..+|++++|+.+|+++++.
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 246778888888888888888888888875
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.18 E-value=1.7e-09 Score=92.22 Aligned_cols=124 Identities=14% Similarity=0.026 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
+..++.+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++..+ ..++
T Consensus 13 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHH
Confidence 4556777777777 77777777777777765 467777777777776 7777888888887777753 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH--HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI--LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
+.+|.++...|++++|+.+++++++. .+..++..++.+ +.. .+++++|+.+++++.
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----------------~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----------------QKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----------------HHHHHHHHHcccchH
Confidence 77777788888888888888877765 345555444444 444 567777877777654
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.16 E-value=1e-10 Score=107.75 Aligned_cols=194 Identities=9% Similarity=0.045 Sum_probs=122.2
Q ss_pred cCCHHHHHHHHHHHHc--CCCHHHHHHH-------HHHHhccccHHHHHHHHHHHHHHHHhhhhccCC-CCC----chhh
Q 009801 141 ERNKGKAFLYHHFAAE--GGNIQSKMAV-------AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD-SPV----IEPI 206 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~--~~~~~a~~~l-------a~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~-~~~----~~~~ 206 (525)
++|...|.+.|.++++ ++..+++..+ +..+....+..+++..+++.+++.+..+..... ..+ .-++
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 7889999999998875 4688888888 788888888888888888888766665433222 111 0000
Q ss_pred hhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC--CHHHHHH
Q 009801 207 RIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQSMEF 284 (525)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 284 (525)
. .-.+....++.++... +++++|.+.|...+..+ +. +.+.
T Consensus 99 ~--------------------------------~r~dl~LayA~~L~~~-----g~y~eA~~~l~~~~~~~p~~~-~~~~ 140 (282)
T 4f3v_A 99 T--------------------------------SPLAITMGFAACEAAQ-----GNYADAMEALEAAPVAGSEHL-VAWM 140 (282)
T ss_dssp S--------------------------------SHHHHHHHHHHHHHHH-----TCHHHHHHHHTSSCCTTCHHH-HHHH
T ss_pred C--------------------------------CHhHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCchH-HHHH
Confidence 0 0123344455555555 36666666666654432 23 6666
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-----ChhHH
Q 009801 285 LGEIYARGAGVERNYTKALEWLTHAARQQL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGH 355 (525)
Q Consensus 285 Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-----~~~a~ 355 (525)
+|.++.. .+++++|+.+|+++....+ ..+++.+|.++.. .|++++|+.+|++++... .+++.
T Consensus 141 ~a~l~~~----~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-----LG~~~eAl~~l~~a~~g~~~P~~~~da~ 211 (282)
T 4f3v_A 141 KAVVYGA----AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-----LALFTEAERRLTEANDSPAGEACARAIA 211 (282)
T ss_dssp HHHHHHH----TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTSTTTTTTHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHhcCCCCccccHHHH
Confidence 6666666 6666666666666555432 2366666666665 456677777777666443 23466
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+++|.++.. +++.++|...|+++...
T Consensus 212 ~~~glaL~~----lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 212 WYLAMARRS----QGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhc
Confidence 777777777 77777777777766655
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.14 E-value=1.7e-09 Score=95.79 Aligned_cols=125 Identities=16% Similarity=0.120 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER-- 421 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-- 421 (525)
+.++..+|.+|.. .+++++|+.+++++++. ....++.++|.++.. .+++++|+.+++++++.
T Consensus 26 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~ 97 (203)
T 3gw4_A 26 SGARFMLGYVYAF----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM----AGNWDAARRCFLEERELLA 97 (203)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Confidence 3455555555555 55555555555555541 123455555555555 55666666666655544
Q ss_pred --C-C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----Ch----HHHHHHHHHHHhhhCCCccccCCCCCCCChH
Q 009801 422 --G-P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GY----EVAQSNAAWILDKYGEGSMCMGESGFCTDAE 486 (525)
Q Consensus 422 --~-~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~----~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~ 486 (525)
+ + ..++..+|.++...|++++|+.+++++++. ++ ..++.++|.++.. .+
T Consensus 98 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----------------~g 161 (203)
T 3gw4_A 98 SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ----------------EK 161 (203)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TT
T ss_pred HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----------------Cc
Confidence 1 1 223455566666666666666666665532 11 2234555555555 44
Q ss_pred hHHHHHHHHHHHHh
Q 009801 487 RHQCAHSLWWQASE 500 (525)
Q Consensus 487 ~~~~A~~~~~~a~~ 500 (525)
++++|+.+++++++
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55666666665554
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.13 E-value=3.9e-10 Score=105.93 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=136.3
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
.++.++..+|..+.. .+++++|+.+|+++++.. ++.++.++|.+|.. .+++++|+..++++++. +++
T Consensus 2 ~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 2 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-----MQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHTTSCTTCH
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHhCCCCH
Confidence 356788899999998 999999999999998764 78999999999987 56999999999999876 578
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK--AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLS 428 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~--a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~ 428 (525)
.+++.+|.+|.. .+++++|+.+|+++++.+... .+....... ....++..|........ ......
T Consensus 73 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~ 141 (281)
T 2c2l_A 73 KAHFFLGQCQLE----MESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-------LRIAKKKRWNSIEERRIHQESELHS 141 (281)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH-------HHHHHHHHHHHHHHTCCCCCCHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchhhHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 899999999999 999999999999998763211 110011111 12233444444444333 344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
.++.. ..|++++|+..++++++. ++......++.++... .+.+++|...|+++.+.
T Consensus 142 ~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------------~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 142 YLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKH---------------DKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH---------------HHHHHHHHHHHHHSSCT
T ss_pred HHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH---------------HHHHHHHHHHHHhhhcc
Confidence 55543 378999999999999876 3455555666666552 46788999999988753
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.12 E-value=3.3e-10 Score=95.27 Aligned_cols=105 Identities=14% Similarity=-0.016 Sum_probs=92.4
Q ss_pred HHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 009801 341 EYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416 (525)
Q Consensus 341 ~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~ 416 (525)
..|+++++.+ ++.+++.+|.++.. .+++++|+..|++++.. .++.+++.+|.++.. .+++++|+.+|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA----MGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----HhhHHHHHHHHH
Confidence 4567777663 66788999999999 99999999999999876 688999999999998 899999999999
Q ss_pred HHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 417 LVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 417 ~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++..+| +.+++.+|.++...|++++|+.+|+++++.
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998864 778999999999999999999999999876
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.11 E-value=1.1e-10 Score=112.77 Aligned_cols=143 Identities=18% Similarity=0.145 Sum_probs=126.8
Q ss_pred cCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C---------------HHHHHHH
Q 009801 261 RDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L---------------YSAYNGI 321 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~l 321 (525)
.++++|+..|+++++. .++.++..+|.+|.. .+++++|+.+|+++++.. + ..++.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 6788899999887754 678899999999999 999999999999999864 4 5899999
Q ss_pred HHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 009801 322 GYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKM 397 (525)
Q Consensus 322 g~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~ 397 (525)
|.++.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+
T Consensus 203 a~~~~~-----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 203 AMCHLK-----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999988 77999999999999876 588999999999999 99999999999999987 688999999999
Q ss_pred HHcCCCCcCCHHHH-HHHHHHHHH
Q 009801 398 FHTGVGLKKNLHMA-TALYKLVAE 420 (525)
Q Consensus 398 y~~g~g~~~~~~~A-~~~~~~a~~ 420 (525)
+.. .+++++| ...|++...
T Consensus 274 ~~~----~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQR----IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHH----HHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHH
Confidence 997 8888888 556666554
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.11 E-value=1.6e-09 Score=95.93 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHcC
Q 009801 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKG 365 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~g 365 (525)
.|++++|...++..... ..+.++..+|.++.. .+++++|+.+++++++. ..+.++.++|.+|..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~- 78 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAF-----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM- 78 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-
Confidence 45666676643333222 245666777777765 45777777777777652 234567788888888
Q ss_pred CCCcCCHHHHHHHHHHHHHc----C-C----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----hHHHH
Q 009801 366 IGVKRDVKLACKYFLVAANA----G-H----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----GP----WSSLS 428 (525)
Q Consensus 366 ~~~~~~~~~A~~~~~~a~~~----~-~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~ 428 (525)
.+++++|+.+++++++. + + ..++.++|.++.. .+++++|+.+++++++. ++ ..++.
T Consensus 79 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 79 ---AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 88888888888888765 2 2 3467888888887 88999999999998754 22 23567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+|.++...|++++|+.+++++++.
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999865
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.10 E-value=2.6e-09 Score=86.79 Aligned_cols=107 Identities=14% Similarity=0.017 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
+..+..+|..+.. .+++++|+.+|+++++. +++.++.++|.++.. .+++++|+.+|+++++.+| ..++
T Consensus 4 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4677888999988 89999999999998876 578889999999987 8899999999999998874 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC--------hHHHHHHHHHHH
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAELG--------YEVAQSNAAWIL 466 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~~--------~~~a~~~la~~~ 466 (525)
+.+|.++...|++++|+.+|+++++.. +..+...++.+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 899999999999999999999998654 444555555443
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.10 E-value=2.7e-09 Score=90.94 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 390 (525)
+..+..+|.++.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+++++++. .++.+
T Consensus 13 ~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 13 AEELKTQANDYFK-----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHH
Confidence 4556667777765 45777777777777654 467777888888888 88888888888888766 56778
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH--HHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS--RWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~--~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++.+|.++.. .+++++|+.+|+++++..+ ..++. .++..+...|++++|+.+++++...
T Consensus 84 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 84 YYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888888877 7888888888888887764 34443 3444477778888888888776543
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.09 E-value=5.2e-10 Score=105.08 Aligned_cols=189 Identities=10% Similarity=-0.049 Sum_probs=128.1
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--C
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--G 158 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~ 158 (525)
.++.+++.+|..++. .+++++|+..|+++. ++.++.+++.+|.+|.. .+++++|+..|+++++. +
T Consensus 2 ~~a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~ 70 (281)
T 2c2l_A 2 PSAQELKEQGNRLFV-------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQ 70 (281)
T ss_dssp CCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTT
T ss_pred hhHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCC
Confidence 456788899998887 889999999999975 67899999999999998 99999999999999875 6
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH--
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ-- 236 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-- 236 (525)
+..+++.+|.+|...|++++|+..|+++++..+.+... ... ...... ...++..+....
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-----~~~-----------~~~~~~---~~~~~~~~~~~~~~ 131 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN-----FGD-----------DIPSAL---RIAKKKRWNSIEER 131 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-----CCS-----------HHHHHH---HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhh-----HHH-----------HHHHHH---HHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988764211 000 000000 011111111111
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
..+.++.....++.+. . +++++|++.++++++.+ +......++.++..- .+.+++|...|.++.+
T Consensus 132 ~~~~~~~i~~~l~~l~-~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 132 RIHQESELHSYLTRLI-A------AERERELEECQRNHEGHEDDGHIRAQQACIEAKH---DKYMADMDELFSQVDE 198 (281)
T ss_dssp CCCCCCHHHHHHHHHH-H------HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH---HHHHHHHHHHHHHSSC
T ss_pred HHhhhHHHHHHHHHHH-H------HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH---HHHHHHHHHHHHhhhc
Confidence 1224555555555554 1 36677777777766553 233444444444430 2456666666666543
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.08 E-value=7e-10 Score=93.20 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=76.3
Q ss_pred HHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCc
Q 009801 149 LYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226 (525)
Q Consensus 149 ~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (525)
..|++++.. ++..+++.+|..+...|++++|+..|++++.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------------------------- 49 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-------------------------------------- 49 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------------------------------------
Confidence 345566554 3566777777777777777777777777654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 009801 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALE 304 (525)
Q Consensus 227 ~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~ 304 (525)
.++.++.+++.+|.++...+ ++++|+.+|++++.. +++.+++++|.+|.. .|++++|+.
T Consensus 50 ----------~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~g~~~~A~~ 110 (148)
T 2vgx_A 50 ----------LDHYDSRFFLGLGACRQAMG-----QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ----XGELAEAES 110 (148)
T ss_dssp ----------HCTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHH
T ss_pred ----------cCcccHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHH
Confidence 34566777777787777663 778888888877754 567777778887777 777888888
Q ss_pred HHHHHHHc
Q 009801 305 WLTHAARQ 312 (525)
Q Consensus 305 ~~~~a~~~ 312 (525)
+|+++++.
T Consensus 111 ~~~~al~~ 118 (148)
T 2vgx_A 111 GLFLAQEL 118 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777664
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.05 E-value=3e-09 Score=86.40 Aligned_cols=108 Identities=16% Similarity=-0.005 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAA 463 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la 463 (525)
+..+..+|..+.. .+++++|+.+|+++++.+| +.+++.+|.++...|++++|+.+++++++. .++.+++++|
T Consensus 4 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5678889999998 9999999999999999875 678899999999999999999999999987 5788999999
Q ss_pred HHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--------CHHHHHHHHHHHH
Q 009801 464 WILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--------NEHAALLIGDAYY 515 (525)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~y~ 515 (525)
.++.. .+++++|+.+|+++++.. +..+...|+.+..
T Consensus 80 ~~~~~----------------~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 80 TAQIA----------------VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHH----------------TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHH----------------HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99998 778999999999998754 5677777777654
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.05 E-value=3.5e-09 Score=86.44 Aligned_cols=110 Identities=18% Similarity=0.102 Sum_probs=86.9
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
++.+++.+|.++.. .+++++|+..|+++++. .+..++..+|.++.. .+++++|+.+++++++..+ ..+
T Consensus 15 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHH----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCchHH
Confidence 45677888888888 88888888888888776 467788888888876 7888888888888887753 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
++.+|.++...|++++|+.+++++++. .+..++..++.++..
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 788888888888888888888888776 456677777777755
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.04 E-value=3.1e-09 Score=90.84 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
++.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.++ ..+
T Consensus 10 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAAEDAELATVVDPKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHH
Confidence 45677888899988 89999999999998876 578889999999987 8899999999999988864 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
++.+|.++..+|++++|+.+|+++++. +++.++.+.+...
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 889999999999999999999999876 4555555555443
No 137
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.03 E-value=1.9e-09 Score=89.79 Aligned_cols=104 Identities=16% Similarity=-0.010 Sum_probs=87.8
Q ss_pred HHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 342 YFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 342 ~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
.|+++++. +++.+++.+|..+.. .+++++|+..|++++.. .++.+++.+|.++.. .+++++|+.+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQ----AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSY 77 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHH
Confidence 44455544 356678899999999 99999999999999876 578899999999998 8999999999999
Q ss_pred HHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 418 VAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 418 a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++..+| +.+++.+|.++...|++++|+.+|+++++.
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998864 678889999999999999999999999876
No 138
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.03 E-value=6.5e-09 Score=103.92 Aligned_cols=190 Identities=15% Similarity=0.076 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC-------------------HHHHHHHHHHHHcCCCCCCCHHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-------------------PQSMEFLGEIYARGAGVERNYTKA 302 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~a~~~Lg~~y~~g~~~~~~~~~A 302 (525)
|.+...-|.-+... +++++|++.|.++++... ..++..||.+|.. .+++++|
T Consensus 4 p~~~l~~a~~l~~~-----~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~----~~~~~~a 74 (434)
T 4b4t_Q 4 PGSKLEEARRLVNE-----KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT----MGAKDKL 74 (434)
T ss_dssp TTHHHHHHHHHHHH-----TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH----HTCHHHH
T ss_pred hHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCHHHH
Confidence 34445555555555 388888888888887521 2468899999999 9999999
Q ss_pred HHHHHHHHHc----C----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHcCC
Q 009801 303 LEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGI 366 (525)
Q Consensus 303 ~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~g~ 366 (525)
+.++++++.. + ...+...+|.++.. .+++++|+.++++++.. ..+.++.+||.+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 147 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV-----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ-- 147 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSC-----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH--
Confidence 9999998763 1 12345667777754 56999999999998753 235688899999999
Q ss_pred CCcCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----C----hHHHHH
Q 009801 367 GVKRDVKLACKYFLVAANA--------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----P----WSSLSR 429 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~--------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~----~~a~~~ 429 (525)
.+++.+|...++++... ...+++..++.+|.. .+++++|..+|+++.... + ...+..
T Consensus 148 --~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 148 --KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp --HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred --ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 99999999999998753 135688899999998 999999999999997652 2 234557
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 430 WALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+|.++...|++++|..+|.++.+.
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788888999999999999998753
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.00 E-value=3.5e-09 Score=90.54 Aligned_cols=107 Identities=17% Similarity=0.031 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNA 462 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~l 462 (525)
++.+++.+|.++.. .+++++|+.+|+++++..+ ..+++.+|.++...|++++|+.+|+++++. .++.+++++
T Consensus 10 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46678899999998 9999999999999999874 778899999999999999999999999987 578999999
Q ss_pred HHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 009801 463 AWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDA 513 (525)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 513 (525)
|.++.. .+++++|+.+|+++++.. ++++++..+..
T Consensus 86 g~~~~~----------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 86 GLARFD----------------MADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHH----------------TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHH----------------ccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999998 778999999999998753 55655555544
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=9e-09 Score=83.94 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 390 (525)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+++++++. .++.+
T Consensus 16 ~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 16 ALMVKNKGNECFQ-----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHH-----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCchHH
Confidence 4455556665554 34666666666666554 345566666666666 66666666666666654 45566
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG 438 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g 438 (525)
++.+|.++.. .+++++|+.+++++++..+ ..++..++.++..+|
T Consensus 87 ~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666665 6666666666666666553 345556666555544
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.00 E-value=1.7e-09 Score=90.06 Aligned_cols=103 Identities=12% Similarity=0.000 Sum_probs=93.3
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE- 156 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~- 156 (525)
.+|+++.+++.+|..++. .+++++|+..|+++. +|.++.+++.+|.+|.. .+++++|+.+|++++.
T Consensus 13 ~~p~~~~~~~~~a~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQ-------AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSYGALM 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhc
Confidence 456678889999999887 889999999999964 78899999999999998 9999999999999976
Q ss_pred -CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Q 009801 157 -GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (525)
Q Consensus 157 -~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~ 193 (525)
++++.+++.+|.+|...|++++|+.+|+++++..+.+
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5689999999999999999999999999999987754
No 142
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.00 E-value=6.7e-09 Score=103.82 Aligned_cols=209 Identities=12% Similarity=0.065 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
|.+...-|.-+...|++++|++.|.++++..+....... ..+........
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~------- 53 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA-----------------------GASVDDKRRNE------- 53 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS-----------------------SSSBCSHHHHH-------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHH-----------------------HHHHHHHHhhh-------
Confidence 345566677778889999999999988775433211100 00001111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
...++..||.+|...+ ++++|+.+++++++. +. ..+...+|.++.. .+++++|+.++++++.
T Consensus 54 -~~~al~~l~~~y~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 123 (434)
T 4b4t_Q 54 -QETSILELGQLYVTMG-----AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV----PDSLDDQIFVCEKSIE 123 (434)
T ss_dssp -HHHHHHHHHHHHHHHT-----CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSC----CSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 1245677888887774 888888888887653 11 1344556777766 7888888888888865
Q ss_pred c--------CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 312 Q--------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 312 ~--------~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
. ....+..+||.+|.. .|++++|+.+++++... ....++..+|.+|.. .+++++|
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A 194 (434)
T 4b4t_Q 124 FAKREKRVFLKHSLSIKLATLHYQ-----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKS 194 (434)
T ss_dssp HHHHSSCCSSHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHHHH-----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHH
Confidence 3 135677888888876 56888888888887643 124577888888888 8888888
Q ss_pred HHHHHHHHHc----CC-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 376 CKYFLVAANA----GH-----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 376 ~~~~~~a~~~----~~-----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
..+|+++... .+ ...+..+|.++.. .+++++|..+|.++.+.
T Consensus 195 ~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 195 KASLTAARTAANSIYCPTQTVAELDLMSGILHCE----DKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHH
Confidence 8888887654 22 2345556666665 78888888888888653
No 143
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.00 E-value=6.8e-09 Score=87.67 Aligned_cols=124 Identities=16% Similarity=-0.000 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-- 422 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 422 (525)
.++..+|.+|.. .+++++|+.+++++++. ++ ..++..+|.++.. .+++++|+.+++++++..
T Consensus 10 ~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 10 RAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Confidence 345666666666 66677777666666644 22 1356666777766 677777777777776542
Q ss_pred --C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhH
Q 009801 423 --P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----G----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488 (525)
Q Consensus 423 --~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (525)
+ ..++..+|.++...|++++|+.+++++++. + ...++.++|.++.. .+++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~ 145 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----------------LGNH 145 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------HTCH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----------------ccCH
Confidence 1 345667777777777777777777777643 1 23466677777766 5567
Q ss_pred HHHHHHHHHHHh
Q 009801 489 QCAHSLWWQASE 500 (525)
Q Consensus 489 ~~A~~~~~~a~~ 500 (525)
++|+.+++++++
T Consensus 146 ~~A~~~~~~a~~ 157 (164)
T 3ro3_A 146 DQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777764
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.00 E-value=4.1e-07 Score=86.10 Aligned_cols=226 Identities=8% Similarity=-0.031 Sum_probs=177.6
Q ss_pred ccCCc-HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCC-----ccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHc
Q 009801 222 SRGED-DEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGL-----RRDRTKALMWFSKAADK--GEPQSMEFLGEIYAR 291 (525)
Q Consensus 222 ~~~~~-~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~-----~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 291 (525)
..|.+ ++|+.++.+++. |.+..++..-+.+....+... ...+++++.++.+++.. .+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 34455 589999999855 578899999998887653000 01268999999999875 688999999999987
Q ss_pred CCCCCC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccC-HHHHHHHHHHHHhC--CChhHHHHHHHHHHc
Q 009801 292 GAGVER--NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKN-YTKAKEYFEKAADN--EEAGGHYNLGVMYYK 364 (525)
Q Consensus 292 g~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~-~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~ 364 (525)
.+ ++++++.++.++++.+ +..++...+.+... .+. +++++.++.++++. .+..|+...+.++..
T Consensus 121 ----l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 121 ----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp ----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred ----cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 55 5899999999999875 89999999999876 234 68999999999876 688999999998876
Q ss_pred CCC----------CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc-------CCHHHHHHHHHHHHHcCChH
Q 009801 365 GIG----------VKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK-------KNLHMATALYKLVAERGPWS 425 (525)
Q Consensus 365 g~~----------~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~-------~~~~~A~~~~~~a~~~~~~~ 425 (525)
-.. ..+.+++++.++.+++.. ++..+++++..++..+.|.. +-++++++++++.++..|..
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 100 015688999999999976 78999999988888765532 45899999999999999877
Q ss_pred HHHHHHHHHH-----hcCCHHHHHHHHHHHHHcChH
Q 009801 426 SLSRWALESY-----LKGDVGKAFLLYSRMAELGYE 456 (525)
Q Consensus 426 a~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~~ 456 (525)
.+..++.+.. ..|..++...++.+.++.++.
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 7766655543 357888999999999887643
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.99 E-value=1.7e-08 Score=81.75 Aligned_cols=111 Identities=19% Similarity=0.083 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
++.+++.+|.++.. .+++++|+.+|++++.. .++.++..+|.++.. .+++++|+.+++++++..+ ..+
T Consensus 11 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHHHHHHHHHhcCccCHHH
Confidence 45667788888888 88888888888888766 567888888888887 8888888888888888764 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhh
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
++.+|.++...|++++|+.+++++++. +++.++..++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 788888888888999999998888876 4677888888888764
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.99 E-value=2.7e-09 Score=92.40 Aligned_cols=114 Identities=12% Similarity=0.177 Sum_probs=91.2
Q ss_pred ccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH-HHcCCCCcCC
Q 009801 333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKM-FHTGVGLKKN 407 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~-y~~g~g~~~~ 407 (525)
.+++++|+.+++++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.+ +.. .++
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----~~~ 94 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ----ASQ 94 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH----TTT
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----cCC
Confidence 45788888888888765 477888888888888 88888999888888866 578888888888 655 677
Q ss_pred H--HHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 408 L--HMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 408 ~--~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+ ++|+.+++++++.+| ..+++.+|.++...|++++|+.+++++++..
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7 889999999888764 6778888888999999999999999888764
No 147
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.98 E-value=4.3e-09 Score=87.69 Aligned_cols=95 Identities=13% Similarity=-0.128 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh--------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--------------SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--------------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+..+.+.|..+.. .+++++|+..|++|++..|. .++.++|.++..+|++++|+.++++|++.
T Consensus 11 a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 11 AYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456667777776 77888888888888777544 28889999999999999999999999877
Q ss_pred ---------ChHHHH----HHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 454 ---------GYEVAQ----SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 454 ---------~~~~a~----~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
++..++ ++.|.++.. .+++++|+..|++|++..
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~----------------lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDG----------------LGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHH----------------CCCHHHHHHHHHHHHhcC
Confidence 577889 999999998 778999999999999753
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.98 E-value=1.1e-09 Score=96.90 Aligned_cols=136 Identities=17% Similarity=0.050 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh----------------hHH
Q 009801 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA----------------GGH 355 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~----------------~a~ 355 (525)
.++++++...++...+. ..+..+..+|..+.. .+++++|+.+|+++++. .++ .++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK-----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 34444444444333221 234455666666654 34666666666666654 222 677
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWA 431 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~ 431 (525)
+++|.+|.. .+++++|+.+++++++. .++.+++.+|.+|.. .+++++|+.+|+++++..| ..++..++
T Consensus 92 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 92 LNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 788888888 88888888888888766 567788888888876 7888888888888877753 55666777
Q ss_pred HHHHhcCCHHHHH
Q 009801 432 LESYLKGDVGKAF 444 (525)
Q Consensus 432 ~~~~~~g~~~~A~ 444 (525)
.++...++.+++.
T Consensus 164 ~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 164 LCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 7776666665555
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.96 E-value=1.3e-08 Score=90.03 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH----------------HHHHHH
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ----------------KAFYQL 394 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~----------------~a~~~l 394 (525)
+++++.+.+....+. ..+..+..+|..+.. .+++++|+.+|+++++. .++ .++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 19 FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ---CCCSGGGCCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hccccCchhhCCHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 555555554433222 356678899999999 99999999999999986 333 889999
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
|.++.. .+++++|+.+++++++..+ ..+++.+|.++...|++++|+.+|+++++. +++.++.+++.++..
T Consensus 95 a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 95 ATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 999998 9999999999999999874 778999999999999999999999999876 578899999999877
No 150
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.96 E-value=1e-08 Score=86.63 Aligned_cols=124 Identities=14% Similarity=0.082 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--- 385 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 385 (525)
++..+|.++.. .+++++|+.+++++++. ++ ..++..+|.+|.. .+++++|+.+++++++.
T Consensus 11 ~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 11 AFGNLGNTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Confidence 34444444443 23555555555554433 11 2356667777777 77777777777776654
Q ss_pred -CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 386 -GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 386 -~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++ ..++.++|.++.. .+++++|+.+++++++.. + ..++..+|.++...|++++|+.+++++++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11 4567777888876 788888888888887542 1 34677889999999999999999998876
Q ss_pred c
Q 009801 453 L 453 (525)
Q Consensus 453 ~ 453 (525)
.
T Consensus 158 ~ 158 (164)
T 3ro3_A 158 I 158 (164)
T ss_dssp H
T ss_pred H
Confidence 4
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.95 E-value=5.3e-09 Score=90.55 Aligned_cols=114 Identities=10% Similarity=0.017 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHH-HHhcCCH--H
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALE-SYLKGDV--G 441 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~-~~~~g~~--~ 441 (525)
.+++++|+..++++++. .++.++..+|.+|.. .+++++|+.+|+++++.. ++.++..+|.+ +...|++ +
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 67899999999999876 588999999999998 999999999999999886 47788899999 7799999 9
Q ss_pred HHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 442 KAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 442 ~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+|+.+++++++. +++.+++++|.++.. .+++++|+.+|+++++..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----------------~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFM----------------QANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----------------cccHHHHHHHHHHHHhhC
Confidence 999999999986 578899999999998 778999999999999865
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=2.6e-08 Score=79.05 Aligned_cols=108 Identities=10% Similarity=-0.024 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
.+.+++.+|.++.. .+++++|+..|+++++. .++.++..+|.++.. .+++++|+.+++++++..+ ..+
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCcccHHH
Confidence 35677888888888 88888888888888876 577888888888887 8888899999988888764 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
+..+|.++...|++++|+.+++++++. +++.++..++.+.
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 788888888999999999999988876 4666777766554
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=3.5e-08 Score=79.10 Aligned_cols=109 Identities=27% Similarity=0.383 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
+.+++.+|.++.. .+++++|+.+|+++++. ++..++..+|.++.. .+++++|+.+++++++..+ ..++
T Consensus 9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHH
Confidence 5677888888888 88888888888888766 467788888888887 7888888888888887753 5677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
..+|.++...|++++|+.+++++++. .++.++.+++.++..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 78888888888999999888888776 467778888877654
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.94 E-value=2.7e-08 Score=78.98 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNA 462 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~l 462 (525)
.+.+++.+|..+.. .+++++|+.+|++++...+ +.++..+|.++...|++++|+.+++++++. .++.++.++
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T 1elw_A 3 QVNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 45678899999998 9999999999999998864 778889999999999999999999999986 478899999
Q ss_pred HHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 463 AWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
|.++.. .+++++|+.+|+++++.+ ++.++..++.+..
T Consensus 79 a~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 79 AAALEF----------------LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHH----------------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHH----------------HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999988 678999999999999875 7888888888753
No 155
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=6.5e-08 Score=90.21 Aligned_cols=176 Identities=10% Similarity=-0.005 Sum_probs=129.5
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcCCCCCCCHHHHH
Q 009801 230 FQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG----EPQSMEFLGEIYARGAGVERNYTKAL 303 (525)
Q Consensus 230 ~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~~~~~~~~~A~ 303 (525)
+..+++.+. +.++.+.+.+|.++... +++++|++++.+.++.+ +..+...++.++.. .++.+.|.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~-----g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~----~~r~d~A~ 156 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAIL-----GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL----NNNVSTAS 156 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHc-----CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH----CCCHHHHH
Confidence 344444333 34567778999999887 49999999999998864 57888899999999 99999999
Q ss_pred HHHHHHHHcCC------HHHHHHHHHH--HHhCCCCCccCHHHHHHHHHHHHhCCCh--hHHHHHHHHHHcCCCCcCCHH
Q 009801 304 EWLTHAARQQL------YSAYNGIGYL--YVKGYGVEKKNYTKAKEYFEKAADNEEA--GGHYNLGVMYYKGIGVKRDVK 373 (525)
Q Consensus 304 ~~~~~a~~~~~------~~a~~~lg~~--~~~g~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~~g~~~~~~~~ 373 (525)
+.+++..+... -.....|+.. ..... .+++++|...|+++.+.... .....+. ++.. +++++
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~----~g~~~ 228 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQ----QRNIA 228 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHH----HTCHH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHH----cCCHH
Confidence 99998876654 4566666644 33211 23789999999998766421 2233333 7888 99999
Q ss_pred HHHHHHHHHHH------------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH
Q 009801 374 LACKYFLVAAN------------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428 (525)
Q Consensus 374 ~A~~~~~~a~~------------~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 428 (525)
+|...+++..+ .+++.++.++..+... .++ +|.++++++.+..|..++.
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~----lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM----QGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH----TTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH----hCh--HHHHHHHHHHHhCCCChHH
Confidence 99999986543 5688888888777665 454 8889999999988755443
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.94 E-value=1.4e-08 Score=84.65 Aligned_cols=95 Identities=12% Similarity=-0.085 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C-------CH-----HHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G-------HQ-----KAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~-------~~-----~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
+..+.++|..+.. .+++++|+..|++|++. . +. .++.++|.++.. .+++++|+.+|.+
T Consensus 11 a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 11 AYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 4556777888888 88888888888888876 3 22 389999999998 8999999999999
Q ss_pred HHHc-------CC--hHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 418 VAER-------GP--WSSL----SRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 418 a~~~-------~~--~~a~----~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
|++. +| ..++ +++|.++..+|++++|+..|++|++..
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9988 75 5678 999999999999999999999999873
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.93 E-value=1.5e-08 Score=81.74 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
+.+|..+.. .+++++|+..|+++++.+| +.+++.+|.++...|++++|+..|+++++. +++.+++++|.++.
T Consensus 21 ~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444443 4455555555555554432 444445555555555555555555555443 24445555555554
Q ss_pred h
Q 009801 468 K 468 (525)
Q Consensus 468 ~ 468 (525)
.
T Consensus 97 ~ 97 (121)
T 1hxi_A 97 N 97 (121)
T ss_dssp H
T ss_pred H
Confidence 4
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.93 E-value=2e-08 Score=81.33 Aligned_cols=112 Identities=19% Similarity=0.113 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 390 (525)
+.++..+|..+.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++. .++.+
T Consensus 12 ~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 12 AERLKTEGNEQMK-----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHHHHHHHHHhcCccCHHH
Confidence 3444555555544 33556666666655543 345556666666666 66666666666666554 34556
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCC
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGD 439 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~ 439 (525)
++.+|.++.. .+++++|+.+++++++..+ ..++..++.++...|+
T Consensus 83 ~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 83 YGRMGLALSS----LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666665 6666666666666666543 4455566666655554
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.91 E-value=9.1e-09 Score=82.98 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (525)
.++.+|..+.. .+++++|+..|+++++. +++.+++.+|.++.. .+++++|+..|+++++.+| ..+++.
T Consensus 19 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46788888888 88999999999998876 678889999999887 8899999999999988874 678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 430 WALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+|.++...|++++|+.+++++++..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999888764
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=3.9e-08 Score=81.81 Aligned_cols=107 Identities=17% Similarity=0.026 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--P 423 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~ 423 (525)
++..++.+|..+.. .+++++|+.+|+++++.. + ..++.++|.++.. .+++++|+.+++++++.. +
T Consensus 27 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 27 SVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp CHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCccC
Confidence 44555566666666 666666666666655542 1 4555555555554 555555655555555554 2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
..+++.+|.++...|++++|+.+|+++++. ++..++..++.+
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 445555555555555555555555555544 234444444443
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.91 E-value=4.1e-08 Score=78.70 Aligned_cols=108 Identities=22% Similarity=0.227 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAA 463 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la 463 (525)
..+++.+|.++.. .+++++|+.+++++++..+ ..++..+|.++...|++++|+.+++++++. .++.++.++|
T Consensus 9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 6788899999998 8999999999999998864 678889999999999999999999999876 5788999999
Q ss_pred HHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 464 WILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.++.. .+++++|+.+|+++++.. ++.++..+|.++.
T Consensus 85 ~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 85 NAYYK----------------QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHH----------------hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99988 678999999999998854 7899999999886
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.91 E-value=2.6e-08 Score=84.80 Aligned_cols=109 Identities=14% Similarity=0.063 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--------------------GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
+..+..+|..+.. .+++++|+..|+++++. .+..++.++|.+|.. .+++++|
T Consensus 11 a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~A 82 (162)
T 3rkv_A 11 VEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN----IGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH----HTCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHH
Confidence 3445566666666 66666666666666554 345788999999988 8999999
Q ss_pred HHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hH-HHHHHHHHHHhh
Q 009801 412 TALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YE-VAQSNAAWILDK 468 (525)
Q Consensus 412 ~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~-~a~~~la~~~~~ 468 (525)
+.+++++++.+| +.+++++|.++..+|++++|+.+|+++++.. ++ .+...++.+...
T Consensus 83 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999998874 7789999999999999999999999998874 44 445566665543
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.89 E-value=6.3e-08 Score=79.50 Aligned_cols=97 Identities=12% Similarity=-0.062 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
.++.+++.+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++.++ +.
T Consensus 7 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCchhHH
Confidence 467788899999999 99999999999998876 578889999999987 8999999999999998864 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+++.+|.++...|++++|+.+|+++++..
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 88899999999999999999999998763
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.89 E-value=1.9e-09 Score=108.68 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
..+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++.+| ..++
T Consensus 317 ~~~~~nla~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~ 388 (457)
T 1kt0_A 317 LAAFLNLAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAAR 388 (457)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5788899999999 99999999999999887 678899999999998 8999999999999998874 5678
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 009801 428 SRWALESYLKGDVGKAFLL 446 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~ 446 (525)
..++.++...+++++|...
T Consensus 389 ~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999888887654
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.88 E-value=3.4e-08 Score=99.52 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=87.6
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC---------------HHHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH---------------QKAFYQLAKMFHTGVGLKKNLHMATA 413 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~l~~~y~~g~g~~~~~~~A~~ 413 (525)
.+.++..+|..+.. .+++++|+..|+++++. .+ ..+++++|.+|.. .+++++|+.
T Consensus 267 ~a~~~~~~G~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~g~~~~A~~ 338 (457)
T 1kt0_A 267 QAAIVKEKGTVYFK----GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK----LREYTKAVE 338 (457)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHH
Confidence 34455555555555 55666666666665543 22 6889999999998 999999999
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 414 LYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 414 ~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
+|+++++.++ ..+++++|.++..+|++++|+.+|++|++. ++..++.+++.++..
T Consensus 339 ~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999874 789999999999999999999999999987 477799999999988
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.88 E-value=3.5e-08 Score=79.98 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------ 423 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------ 423 (525)
+.+++.+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++..+
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchhH
Confidence 4567788888888 88888888888888876 467788888888887 8888888888888887642
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-ChHHHHHHHHHHHhh
Q 009801 424 ---WSSLSRWALESYLKGDVGKAFLLYSRMAEL-GYEVAQSNAAWILDK 468 (525)
Q Consensus 424 ---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~a~~~la~~~~~ 468 (525)
..+++.+|.++...|++++|+.+|+++++. .++.....++.+...
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 567788899999999999999999998876 356666777766544
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.88 E-value=4.3e-08 Score=79.41 Aligned_cols=108 Identities=19% Similarity=0.104 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--h-------H
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y-------E 456 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~-------~ 456 (525)
+.+++.+|..+.. .+++++|+.+|+++++..+ +.+++.+|.++...|++++|+.+++++++.. + +
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 4678889999987 9999999999999999864 6788899999999999999999999998763 3 7
Q ss_pred HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Q 009801 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDAYY 515 (525)
Q Consensus 457 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~ 515 (525)
.+++++|.++.. .+++++|+.+|+++++.. +++....++.++.
T Consensus 80 ~~~~~la~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 80 KAYARIGNSYFK----------------EEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------hccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 789999999988 778999999999999865 7888888888775
No 168
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.86 E-value=4.5e-08 Score=95.50 Aligned_cols=127 Identities=14% Similarity=0.062 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQL 394 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 394 (525)
+..+..+|..+.. .+++++|+..|+++++...... . ..+.+++.. ....+..++.++
T Consensus 223 a~~~~~~g~~~~~-----~g~~~~Ai~~y~kAl~~~~~~~---------~----~~~~~~~~~-----~~~~~~~~~~nl 279 (370)
T 1ihg_A 223 SEDLKNIGNTFFK-----SQNWEMAIKKYTKVLRYVEGSR---------A----AAEDADGAK-----LQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHH---------H----HSCHHHHGG-----GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHhhcCc---------c----ccChHHHHH-----HHHHHHHHHHHH
Confidence 5566666666665 5567777777766664210000 0 011111110 112356677888
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
|.+|.. .+++++|+.+++++++.++ ..+++++|.++..+|++++|+.+|++|++. ++..++..++.++..
T Consensus 280 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 280 GACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHh----ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888887 8888888888888888763 677888888888888888888888888776 467777888887766
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=6.2e-07 Score=85.31 Aligned_cols=210 Identities=9% Similarity=-0.022 Sum_probs=148.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC-C-CHHHHHHHHHHHHHc
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVE-R-NYTKALEWLTHAARQ 312 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~-~-~~~~A~~~~~~a~~~ 312 (525)
.+|.+..++...+.+....+ .++++++.++.+++.. .+..++...+.++.. . + ++++++.++.++++.
T Consensus 83 ~nP~~ytaWn~R~~iL~~l~----~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~----l~~~~~~~EL~~~~k~L~~ 154 (349)
T 3q7a_A 83 MNPAHYTVWQYRFSLLTSLN----KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR----ISPQDPVSEIEYIHGSLLP 154 (349)
T ss_dssp HCTTCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----HCCSCCHHHHHHHHHHTSS
T ss_pred hCchhHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCCChHHHHHHHHHHHHh
Confidence 34567888888888887663 3699999999999875 678899999998887 4 5 788999999999877
Q ss_pred C--CHHHHHHHHHHHHhCCCC---CccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC-------HHHHHHH
Q 009801 313 Q--LYSAYNGIGYLYVKGYGV---EKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD-------VKLACKY 378 (525)
Q Consensus 313 ~--~~~a~~~lg~~~~~g~~~---~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~-------~~~A~~~ 378 (525)
. +..++...+.+...-... ......+++.++.++++. .+..|+...+.++.. .+. +++++.+
T Consensus 155 dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~----l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 155 DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS----RPGAETSSRSLQDELIY 230 (349)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT----STTCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----ccccccchHHHHHHHHH
Confidence 5 788888888877541000 011234899999999876 578899999999887 544 7899999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCCcC----------------CHHHHHHHHHHHHHc--------CChHHHHHHHH
Q 009801 379 FLVAANA--GHQKAFYQLAKMFHTGVGLKK----------------NLHMATALYKLVAER--------GPWSSLSRWAL 432 (525)
Q Consensus 379 ~~~a~~~--~~~~a~~~l~~~y~~g~g~~~----------------~~~~A~~~~~~a~~~--------~~~~a~~~l~~ 432 (525)
+.+++.. ++..+++++..++..+..... ...+-.+.....+.. ..+.+...++.
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d 310 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLAD 310 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHH
Confidence 9999876 788899888877765221100 122222222222221 23567788999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-ChHHH
Q 009801 433 ESYLKGDVGKAFLLYSRMAEL-GYEVA 458 (525)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~-~~~~a 458 (525)
+|...|+.++|...++...+. +....
T Consensus 311 ~~~~~~~~~~a~~~~~~l~~~~dpir~ 337 (349)
T 3q7a_A 311 SFIEQNRVDDAAKVFEKLSSEYDQMRA 337 (349)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHhcCCHHHHHHHHHHHHhhhChHHH
Confidence 999999999999999998744 44333
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.84 E-value=3.6e-08 Score=83.90 Aligned_cols=109 Identities=15% Similarity=-0.070 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc------------------C--ChHHHHHHHHHHHhcCCHHHHHHH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER------------------G--PWSSLSRWALESYLKGDVGKAFLL 446 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~------------------~--~~~a~~~l~~~~~~~g~~~~A~~~ 446 (525)
.+..+...|..+.. .+++++|+..|+++++. + ...+++++|.++..+|++++|+.+
T Consensus 10 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45678889999998 99999999999999987 2 246788999999999999999999
Q ss_pred HHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CH-HHHHHHHHHHH
Q 009801 447 YSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NE-HAALLIGDAYY 515 (525)
Q Consensus 447 ~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~-~a~~~lg~~y~ 515 (525)
++++++. .++.+++++|.++.. .+++++|+.+|+++++.. ++ .+...|+.+..
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~----------------~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIA----------------AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHH----------------HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999987 588999999999998 778999999999999875 55 45666766654
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1e-07 Score=79.20 Aligned_cols=108 Identities=18% Similarity=0.043 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC-----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 009801 313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE-----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-- 385 (525)
Q Consensus 313 ~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-- 385 (525)
.....++.+|..+.. .+++++|+.+|+++++... +.+++.+|.+|.. .+++++|+.+++++++.
T Consensus 26 ~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFK-----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEKDG 96 (148)
T ss_dssp CCHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCc
Confidence 478899999999987 7799999999999998743 6789999999999 99999999999999987
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 009801 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALE 433 (525)
Q Consensus 386 ~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 433 (525)
.++.+++.+|.++.. .+++++|+.+|+++++..+ ..+...++.+
T Consensus 97 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 97 GDVKALYRRSQALEK----LGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 578999999999998 9999999999999999875 4555555544
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.83 E-value=6.2e-08 Score=78.60 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH---HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ---KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---- 423 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---- 423 (525)
.+++.+|.++.. .+++++|+..|+++++. +++ .+++.+|.++.. .+++++|+.+|+++++..|
T Consensus 3 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 3 RTAYNVAFDALK----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp CCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCCCCcc
Confidence 456777888888 88888888888887765 344 678888888877 7888888888888887653
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 -WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 -~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+.+++.+|.++...|++++|+.+|+++++.
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566778888888888888888888888775
No 173
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=7.1e-07 Score=83.24 Aligned_cols=233 Identities=11% Similarity=-0.019 Sum_probs=160.8
Q ss_pred hhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCH
Q 009801 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
....|.|+.++....+....+.-...+.+.+.|...| ++... ..+.....+...++..+.. +
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg-----~~~~~------~~~~~~~~a~~~la~~~~~------~- 84 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALG-----QYQSQ------DPTSKLGKVLDLYVQFLDT------K- 84 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTT-----CCCCC------CSSSTTHHHHHHHHHHHTT------T-
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcC-----CCccC------CCCCHHHHHHHHHHHHhcc------c-
Confidence 3457888888875443222233445555666666553 22110 0111222344444444421 1
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC----ChhHHHHHHHHHHcCCCCcCCHH
Q 009801 300 TKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE----EAGGHYNLGVMYYKGIGVKRDVK 373 (525)
Q Consensus 300 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~~~~ 373 (525)
|+..+++.++. ....+...+|.++.. .|++++|++++.+.++.+ +.++...++.++.. .++.+
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~-----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~----~~r~d 153 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAI-----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL----NNNVS 153 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH----TTCHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH----CCCHH
Confidence 78888888765 366777899999987 679999999999998764 67788999999999 99999
Q ss_pred HHHHHHHHHHHcCC------HHHHHHHHHH--HHcCCCCcCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCHHHH
Q 009801 374 LACKYFLVAANAGH------QKAFYQLAKM--FHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 374 ~A~~~~~~a~~~~~------~~a~~~l~~~--y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~~~~~g~~~~A 443 (525)
.|.+.+++..+... ......|+.. ...- ..+++.+|...|+++.+..+. .....+. ++..+|++++|
T Consensus 154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~--g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eA 230 (310)
T 3mv2_B 154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFAT--NKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH--TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHH
Confidence 99999999877754 4555666544 3220 034899999999998877653 2333334 79999999999
Q ss_pred HHHHHHHHH------------cChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 444 FLLYSRMAE------------LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 444 ~~~~~~a~~------------~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
...+++..+ .+++.++.|+..+....| + +|.++++++.+..
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg----------------k--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG----------------L--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT----------------C--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC----------------h--HHHHHHHHHHHhC
Confidence 999987654 568999989888887732 2 5778888887754
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.82 E-value=6.6e-08 Score=79.40 Aligned_cols=110 Identities=15% Similarity=-0.010 Sum_probs=94.4
Q ss_pred cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHH
Q 009801 385 AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQS 460 (525)
Q Consensus 385 ~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~ 460 (525)
..++..++.+|..+.. .+++++|+.+|+++++..+ +.+++.+|.++...|++++|+.+++++++. +++.+++
T Consensus 6 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3568889999999998 9999999999999999874 678899999999999999999999999986 5788999
Q ss_pred HHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-------CHHHHHHHHHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-------NEHAALLIGDAY 514 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~y 514 (525)
++|.++.. .+++++|+.+|+++++.. +..+...+..+.
T Consensus 82 ~l~~~~~~----------------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 82 FLGQCQLE----------------MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHH----------------HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 99999998 678999999999998743 344555555443
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.82 E-value=2.3e-09 Score=108.54 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHH
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~ 444 (525)
.+++++|+.+|+++++. .++.++.++|.+|.. .+++++|+.+++++++.++ ..+++++|.++..+|++++|+
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555544 345555555555554 5555555555555555542 445555555555555555555
Q ss_pred HHHHHHHHc--ChHHHHHHHHHH
Q 009801 445 LLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 445 ~~~~~a~~~--~~~~a~~~la~~ 465 (525)
.+|+++++. ++..++.+++.+
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555544 234455555554
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=6.9e-07 Score=84.56 Aligned_cols=219 Identities=9% Similarity=-0.056 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCC----------HHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERN----------YTKALEWLTHAARQQ--LYSAYNGIGYLYVK 327 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~----------~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 327 (525)
-.++|+.++.+++.. .+..+++.-+.+... .+. +++++.++..++..+ +..++..-+.++..
T Consensus 45 ~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~----l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 45 LDESVLELTSQILGANPDFATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH----hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 345799999999876 678899988888876 333 688999999998764 89999999999876
Q ss_pred CCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 009801 328 GYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD-VKLACKYFLVAANA--GHQKAFYQLAKMFHTGV 402 (525)
Q Consensus 328 g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~ 402 (525)
- ...++++++.++.++++. .+..++...+++... .+. .++++.++.++++. .+..++.+.+.++..-.
T Consensus 121 l---~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 121 L---PEPNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp C---SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred c---CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 1 112589999999999876 578899999999988 777 69999999999987 68999999998876521
Q ss_pred C----------CcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcChHHHH
Q 009801 403 G----------LKKNLHMATALYKLVAERGP--WSSLSRWALESYLK-----------GDVGKAFLLYSRMAELGYEVAQ 459 (525)
Q Consensus 403 g----------~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~-----------g~~~~A~~~~~~a~~~~~~~a~ 459 (525)
. ..+.++++++++.+++..+| ..+++.+.+++... +.+++++.++++.++..+...+
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW 273 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence 0 11568999999999999875 67786555555544 4589999999999987544455
Q ss_pred HHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 460 SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 460 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
..++.+...-+ + ...+..++...++.+.++.+
T Consensus 274 ~l~~~~~~~~~-----~------~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 274 CLLTIILLMRA-----L------DPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHH-----H------CTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh-----h------cccccHHHHHHHHHHHHHhC
Confidence 55555443200 0 01345678999999988776
No 177
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.80 E-value=1.8e-07 Score=96.48 Aligned_cols=173 Identities=8% Similarity=-0.084 Sum_probs=142.3
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD----------VKLACKYFLVAANA--GHQKAFYQLAKMFHT 400 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~ 400 (525)
-.++|+.++.+++.. .+..+|+..+.++.. .++ +++++.++.++++. .+..++++.+.++..
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456888888888866 577888888888887 666 89999999999987 688999999999987
Q ss_pred CCCCcC--CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCc
Q 009801 401 GVGLKK--NLHMATALYKLVAERG--PWSSLSRWALESYLKG-DVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGS 473 (525)
Q Consensus 401 g~g~~~--~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g-~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~ 473 (525)
.+ +++++++++.++++.+ +..++...+++....| .+++++.+++++++. .+..|+++.+.++...+...
T Consensus 120 ----l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 120 ----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp ----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred ----cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 66 7799999999999997 4779999999999999 999999999999987 58999999999998853210
Q ss_pred cccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcc
Q 009801 474 MCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYG 517 (525)
Q Consensus 474 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g 517 (525)
..+..+ ....+.+++|++++.+|++.+ +..+++.++.++..+
T Consensus 196 -~~~~~~-~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 196 -DSGPQG-RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp -CSSSCC-SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred -cccccc-cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 000001 123688999999999999854 788999999998754
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.79 E-value=3.7e-08 Score=77.38 Aligned_cols=97 Identities=15% Similarity=0.046 Sum_probs=79.6
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---- 423 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---- 423 (525)
+++.+++.+|.++.. .+++++|+.+|+++++. .+..++..+|.++.. .+++++|+.+++++++..+
T Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 4 QNPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp SSTTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSCCTTC
T ss_pred CcHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccch
Confidence 456777888888888 88888888888888876 567888888888887 8888888888888888753
Q ss_pred hHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 009801 424 WSSLSRWALESYLK-GDVGKAFLLYSRMAELG 454 (525)
Q Consensus 424 ~~a~~~l~~~~~~~-g~~~~A~~~~~~a~~~~ 454 (525)
..++..+|.++... |++++|+.++++++...
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 46778888888888 88888888888887763
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.79 E-value=1.5e-08 Score=97.74 Aligned_cols=148 Identities=10% Similarity=-0.013 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQ 393 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 393 (525)
.+..+..+|..+.. .+++++|+.+|+++++...... .+.. .++..++...+. ..++++
T Consensus 178 ~a~~~~~~g~~~~~-----~g~~~~A~~~y~~Al~~~p~~~------~~~~----~~~~~~~~~~l~-------~~~~~n 235 (338)
T 2if4_A 178 AADRRKMDGNSLFK-----EEKLEEAMQQYEMAIAYMGDDF------MFQL----YGKYQDMALAVK-------NPCHLN 235 (338)
T ss_dssp HHHHHHHHHHHTCS-----SSCCHHHHHHHHHHHHHSCHHH------HHTC----CHHHHHHHHHHH-------THHHHH
T ss_pred HHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHhccch------hhhh----cccHHHHHHHHH-------HHHHHH
Confidence 47788888888866 6799999999999887654433 1233 445555544332 247889
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhh
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
+|.+|.. .+++++|+.+|+++++.++ ..+++++|.++..+|++++|+.+|+++++. +++.++.+++.+....
T Consensus 236 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 236 IAACLIK----LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHT----TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 9999997 8999999999999999874 778999999999999999999999999765 5777888888775442
Q ss_pred CCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.+..+++...|++++...
T Consensus 312 ---------------~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 312 ---------------KALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp ---------------------------------
T ss_pred ---------------HHHHHHHHHHHHHhhCCC
Confidence 456678888888887654
No 180
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=1.2e-06 Score=83.22 Aligned_cols=212 Identities=11% Similarity=-0.049 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCcc-C
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER-NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKK-N 335 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~-~ 335 (525)
..++|+.++.+++.. .+..+++..+.++.. .+ ++++++.++.+++... +..++...+.++.... + +
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~----l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~----~~~ 140 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTS----LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS----PQD 140 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC----CSC
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc----CCC
Confidence 567899999999876 678999999999988 66 6999999999999875 8999999999987621 3 6
Q ss_pred HHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHH--------HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC
Q 009801 336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVK--------LACKYFLVAANA--GHQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 336 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~--------~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g 403 (525)
+++++.++.++++. .+..++...+++... .+.++ +++.+++++++. .+..|+.+.+.++..-..
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 78999999999987 478899999999887 66665 999999999987 688999999999876211
Q ss_pred ---CcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHH------
Q 009801 404 ---LKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDV--------------------GKAFLLYSRMAE------ 452 (525)
Q Consensus 404 ---~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~--------------------~~A~~~~~~a~~------ 452 (525)
....++++++++++++..+| ..+++.+..++...|+- .+-.......+.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 11127999999999999874 67888888878776653 111111111111
Q ss_pred --cChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 453 --LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 453 --~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
...+.|+.-++.+|.. .++.++|.+.++...+.
T Consensus 297 ~~~~s~~al~~l~d~~~~----------------~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIE----------------QNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHhh
Confidence 2467788889999987 55678999999987644
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.75 E-value=3e-08 Score=77.95 Aligned_cols=98 Identities=11% Similarity=-0.126 Sum_probs=88.6
Q ss_pred CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-
Q 009801 81 DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG- 157 (525)
Q Consensus 81 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~- 157 (525)
+|+++.+++.+|..+.. .+++++|+.+++++. .+.++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 2 ~p~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~ 70 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYD-------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVI 70 (112)
T ss_dssp CCSSTTGGGGHHHHHHS-------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence 57788999999999886 788999999999975 56789999999999998 89999999999999874
Q ss_pred -C--CHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Q 009801 158 -G--NIQSKMAVAYTYLRQ-DMHDKAVKLYAELAEI 189 (525)
Q Consensus 158 -~--~~~a~~~la~~y~~~-~~~~~A~~~y~~~~~~ 189 (525)
. +..++..+|.++... +++++|++++++++..
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5 789999999999999 9999999999998654
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.74 E-value=1.3e-07 Score=76.61 Aligned_cols=94 Identities=20% Similarity=0.233 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh---hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC--
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA---GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH-- 387 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~-- 387 (525)
+++.+|..+.. .+++++|+..|+++++. +++ .+++.+|.+|.. .+++++|+.+|+++++. ++
T Consensus 4 ~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 4 TAYNVAFDALK-----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp CHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHH-----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCCCCcc
Confidence 34555555554 34666666666666543 233 466666666666 66666666666666654 34
Q ss_pred -HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 388 -QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 388 -~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
+.+++++|.++.. .+++++|+.+|+++++..|
T Consensus 75 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 75 AAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCC
Confidence 5666666766665 6667777777777666654
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.74 E-value=1.2e-07 Score=92.56 Aligned_cols=136 Identities=17% Similarity=0.101 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL 358 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 358 (525)
+..+..+|..+.. .+++++|+..|+++++...... .. . +.+++.. .+..++.++.++
T Consensus 223 a~~~~~~g~~~~~----~g~~~~Ai~~y~kAl~~~~~~~--------~~-----~-~~~~~~~-----~~~~~~~~~~nl 279 (370)
T 1ihg_A 223 SEDLKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSR--------AA-----A-EDADGAK-----LQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHH--------HH-----S-CHHHHGG-----GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhcCc--------cc-----c-ChHHHHH-----HHHHHHHHHHHH
Confidence 3456778888888 8899999999998876311000 00 0 1111111 112345566777
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHH
Q 009801 359 GVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALES 434 (525)
Q Consensus 359 g~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 434 (525)
|.+|.. .+++++|+.+++++++. +++.+++++|.+|.. .+++++|+.+|+++++..+ ..+...++.++
T Consensus 280 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 280 GACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHh----ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777 77777777777777765 466777777777776 6777777777777776653 45666667766
Q ss_pred HhcCCHHHHHH
Q 009801 435 YLKGDVGKAFL 445 (525)
Q Consensus 435 ~~~g~~~~A~~ 445 (525)
...++++++..
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.72 E-value=3.1e-08 Score=79.19 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHH
Q 009801 369 KRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVG 441 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~ 441 (525)
.+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+.+|+++++..| +.+++.+|.++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence 455555666666655542 23455555665555 5566666666666655542 445555666666666666
Q ss_pred HHHHHHHHHHHc
Q 009801 442 KAFLLYSRMAEL 453 (525)
Q Consensus 442 ~A~~~~~~a~~~ 453 (525)
+|+.+++++++.
T Consensus 79 ~A~~~~~~al~~ 90 (117)
T 3k9i_A 79 QGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666655544
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.72 E-value=2.9e-08 Score=95.80 Aligned_cols=144 Identities=12% Similarity=0.038 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLG 359 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 359 (525)
..+..+|..+.. .+++++|+.+|++++........ +.. .+++.++...+. ..+++++|
T Consensus 180 ~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~------~~~-----~~~~~~~~~~l~-------~~~~~nla 237 (338)
T 2if4_A 180 DRRKMDGNSLFK----EEKLEEAMQQYEMAIAYMGDDFM------FQL-----YGKYQDMALAVK-------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHTCS----SSCCHHHHHHHHHHHHHSCHHHH------HTC-----CHHHHHHHHHHH-------THHHHHHH
T ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccchh------hhh-----cccHHHHHHHHH-------HHHHHHHH
Confidence 334555666655 66666666666666655432221 100 123333333221 23556666
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHH-H
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALE-S 434 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~-~ 434 (525)
.+|.. .+++++|+.+|+++++. ++..+++++|.+|.. .+++++|+.+|+++++..+ ..++..++.+ .
T Consensus 238 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 238 ACLIK----LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHT----TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 66666 66666666666666554 355666666666665 6666666666666655543 3444455544 2
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 009801 435 YLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 435 ~~~g~~~~A~~~~~~a~~~ 453 (525)
...+..+++...|.+++..
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3344555555566555544
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.70 E-value=4.8e-09 Score=106.22 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHH
Q 009801 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYN 357 (525)
Q Consensus 282 ~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 357 (525)
+..+|.++.. .+++++|+.+|+++++.. ++.++.++|.+|.. .+++++|+.+++++++. +++.++++
T Consensus 9 ~~~lg~~~~~----~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~l~p~~~~~~~~ 79 (477)
T 1wao_1 9 LKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-----TECYGYALGDATRAIELDKKYIKGYYR 79 (477)
T ss_dssp SSSSSSSTTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3445555665 777888888888877653 67777788887776 45788888888887766 46677788
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HHcCCCCcCCHHHHHHHHH
Q 009801 358 LGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKM--FHTGVGLKKNLHMATALYK 416 (525)
Q Consensus 358 lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~--y~~g~g~~~~~~~A~~~~~ 416 (525)
+|.+|.. .+++++|+.+|+++++. ++..++.+++.+ +.. .+++++|++.++
T Consensus 80 lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence 8888888 88888888888887766 456677777776 555 677888888887
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.64 E-value=6.7e-07 Score=92.13 Aligned_cols=128 Identities=9% Similarity=-0.053 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcC--CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcC-CH
Q 009801 336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR--DVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKK-NL 408 (525)
Q Consensus 336 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~--~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~-~~ 408 (525)
+++++.++.++++. .+..+|+..++++.. .+ ++++++.++.++++. .+..++.+.+.+... .+ .+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~----l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~----l~~~~ 160 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSR----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAP 160 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TCCCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH----cCCCh
Confidence 77888888888765 477888888888888 77 679999999998877 578888888888876 55 78
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhC
Q 009801 409 HMATALYKLVAERG--PWSSLSRWALESYLK--------------GDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYG 470 (525)
Q Consensus 409 ~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~ 470 (525)
+++++++.++++.+ +..|+...+.++... +.+++|++++.+|+.. ++..+++.++.++...+
T Consensus 161 ~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 89999999998886 477888888887764 5689999999999876 68899999999997744
Q ss_pred C
Q 009801 471 E 471 (525)
Q Consensus 471 ~ 471 (525)
.
T Consensus 241 ~ 241 (567)
T 1dce_A 241 P 241 (567)
T ss_dssp C
T ss_pred C
Confidence 3
No 188
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.63 E-value=0.00014 Score=76.01 Aligned_cols=370 Identities=7% Similarity=-0.048 Sum_probs=192.8
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCC---HHHHHHHHHHH
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERN---KGKAFLYHHFA 154 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d---~~~A~~~~~~a 154 (525)
.+|.+..+...+...... .++++.+...|+++. -|.....+......-.. .++ .+.+...|++|
T Consensus 61 ~np~d~~~W~~yi~~~~~-------~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~----~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVS-------LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFD----KMEELDAAVIEPVLARC 129 (679)
T ss_dssp HCTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----C--CCCHHHHHHHHHHH
T ss_pred HCcCCHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----hCCcchHHHHHHHHHHH
Confidence 455666666666665443 457899999999965 45677777777666554 445 99999999999
Q ss_pred HcC----CCHHHHHHHHHHHhccccH--------HHHHHHHHHHHHHHHh-hhhccCCCCCchhhhhcccchhhhhHhh-
Q 009801 155 AEG----GNIQSKMAVAYTYLRQDMH--------DKAVKLYAELAEIAVN-SFLISKDSPVIEPIRIHNGAEENKGALR- 220 (525)
Q Consensus 155 ~~~----~~~~a~~~la~~y~~~~~~--------~~A~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (525)
+.. .++.............++. +.....|++++..-.. +. .. . .++.......
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~----~s-----~----~iW~~Yi~f~~ 196 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP----KS-----I----QFWNEYLHFLE 196 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS----SC-----H----HHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc----cc-----h----HHHHHHHHHHH
Confidence 874 3555544444333333332 3344667766643111 00 00 0 0010000000
Q ss_pred --------hccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhc-CC--------CCccCHHHHHHHHHHHHh------
Q 009801 221 --------KSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFG-LR--------GLRRDRTKALMWFSKAAD------ 275 (525)
Q Consensus 221 --------~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~-~~--------~~~~~~~~A~~~~~~a~~------ 275 (525)
..+++.+.+.++|++++.. ...+-.+..=..+... +. ....++..|..+++..-.
T Consensus 197 ~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 197 HWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHh
Confidence 0122345566666665432 1111111000000000 00 001234444444443111
Q ss_pred cC-------------------C-HHHHHHHHHHH-HcCCC--CCC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhC
Q 009801 276 KG-------------------E-PQSMEFLGEIY-ARGAG--VER--NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKG 328 (525)
Q Consensus 276 ~~-------------------~-~~a~~~Lg~~y-~~g~~--~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g 328 (525)
.. . .........+- ....+ +.. ..+.....|++++... .++.+...+.+...
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~- 355 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGE- 355 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-
Confidence 00 0 11111111111 11111 000 1334556777777653 67777777777765
Q ss_pred CCCCccCHHHHH-HHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-------------------
Q 009801 329 YGVEKKNYTKAK-EYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG------------------- 386 (525)
Q Consensus 329 ~~~~~~~~~~A~-~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------------------- 386 (525)
.++.++|. ..|++|+... +...+..++.+... .++.++|...|+++++..
T Consensus 356 ----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~----~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 356 ----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL----NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp ----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred ----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 33556775 7888887642 34445667777777 777888888888777531
Q ss_pred -----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-C--ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc--Ch
Q 009801 387 -----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER-G--PWSSLSRWALESYLKG-DVGKAFLLYSRMAEL--GY 455 (525)
Q Consensus 387 -----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-~--~~~a~~~l~~~~~~~g-~~~~A~~~~~~a~~~--~~ 455 (525)
....+...+.+... .++.+.|...|.+|++. . ....+...+.+.+..+ +.+.|...|+++++. .+
T Consensus 428 ~~~~~~~~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 11223333333333 56778888888888766 3 2445555555555554 478888888888775 34
Q ss_pred HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 456 EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 456 ~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+..+..++.+... .++.+.|..+|++|+...
T Consensus 504 ~~~w~~y~~fe~~----------------~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 504 GEYINKYLDFLIY----------------VNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHHHHH----------------HTCHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHhc
Confidence 4444445554444 446677888888887654
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.62 E-value=9.8e-08 Score=79.28 Aligned_cols=84 Identities=13% Similarity=0.204 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD----------VKLACKYFLVAANA--GHQKAFYQLAKMFHT 400 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~ 400 (525)
.+++|++.++++++. +++++++++|.++.. .++ +++|+..|++|+++ ++..+++++|.+|..
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~----l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 677888888888765 577888888888877 554 45888888888877 578888888888875
Q ss_pred CCCCc-----------CCHHHHHHHHHHHHHcCChHH
Q 009801 401 GVGLK-----------KNLHMATALYKLVAERGPWSS 426 (525)
Q Consensus 401 g~g~~-----------~~~~~A~~~~~~a~~~~~~~a 426 (525)
. +++++|+.+|++|++++|...
T Consensus 93 ----lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 ----FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp ----HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ----hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 3 489999999999999887643
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.60 E-value=1.3e-07 Score=75.45 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=73.5
Q ss_pred ccCHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc
Q 009801 333 KKNYTKAKEYFEKAADNE-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~ 405 (525)
.|++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++++|.++.. .
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN----L 74 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----c
Confidence 468999999999999873 45789999999999 99999999999999987 689999999999998 9
Q ss_pred CCHHHHHHHHHHHHHcCCh
Q 009801 406 KNLHMATALYKLVAERGPW 424 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~ 424 (525)
+++++|+.+++++++..+.
T Consensus 75 g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp TCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999999988643
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.57 E-value=4e-07 Score=75.63 Aligned_cols=93 Identities=10% Similarity=0.021 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhC
Q 009801 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGD----------VGKAFLLYSRMAEL--GYEVAQSNAAWILDKYG 470 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~----------~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~ 470 (525)
.+.+++|+..++++++.+| +++++++|.++...++ +++|+..|++|++. ++..+++++|.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3467888888888888864 6778888888888776 46999999999987 58899999999998743
Q ss_pred CCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
... .+.....+++++|+.+|++|++.+
T Consensus 95 ~l~-----P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLT-----PDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHC-----CCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccC-----cchhhhhccHHHHHHHHHHHHHhC
Confidence 210 000111369999999999999866
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=1e-07 Score=74.92 Aligned_cols=78 Identities=12% Similarity=0.026 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--Ch------HHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GY------EVA 458 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~------~~a 458 (525)
.+++.+|.++.. .+++++|+.+|+++++..| +.+++++|.++...|++++|+.+++++++. ++ ..+
T Consensus 5 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 5 EKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 344455555554 5555555555555555442 344455555555555555555555555544 22 445
Q ss_pred HHHHHHHHhhhC
Q 009801 459 QSNAAWILDKYG 470 (525)
Q Consensus 459 ~~~la~~~~~~~ 470 (525)
++++|.++...|
T Consensus 81 ~~~~~~~~~~~~ 92 (111)
T 2l6j_A 81 QYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.2e-06 Score=67.04 Aligned_cols=80 Identities=15% Similarity=-0.002 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
..+++.+|.+++..|++++|+.+|+++++. .++.+++++|.++.. .+++++|+.+|+++++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----------------~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----------------LGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----------------hcCHHHHHHHHHHHHHh
Confidence 567889999999999999999999999986 578999999999998 77899999999999986
Q ss_pred C--C------HHHHHHHHHHHHccccc
Q 009801 502 G--N------EHAALLIGDAYYYGRVR 520 (525)
Q Consensus 502 ~--~------~~a~~~lg~~y~~g~g~ 520 (525)
. + ..+++.+|.++. ..|.
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~-~~~~ 93 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQG-AVGS 93 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHH-HHHC
T ss_pred CCCccHHHHHHHHHHHHHHHHH-HHHh
Confidence 5 5 789999999987 4553
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.40 E-value=4.5e-06 Score=66.05 Aligned_cols=76 Identities=9% Similarity=0.020 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009801 374 LACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSR 449 (525)
Q Consensus 374 ~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~ 449 (525)
+|+..|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++.++ ..+++.+|.++...|++++|+.+|++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456677777665 567777777777776 7778888888888777754 56777788888888888888888888
Q ss_pred HHHc
Q 009801 450 MAEL 453 (525)
Q Consensus 450 a~~~ 453 (525)
+++.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.40 E-value=3.7e-06 Score=63.05 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAA 463 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la 463 (525)
+.+++.+|.++.. .+++++|+.+|+++++..+ ..+++.+|.++...|++++|+.+++++++. +++.++.++|
T Consensus 9 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4566677777776 7777777777777777653 556777777777777777777777777765 4667777777
Q ss_pred HHHhh
Q 009801 464 WILDK 468 (525)
Q Consensus 464 ~~~~~ 468 (525)
.++..
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76654
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.36 E-value=3.9e-06 Score=62.91 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
+.+++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.++.. .+++++|+.+++++++.+| ..++
T Consensus 9 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 4566677777777 77777777777777665 456677777777776 7777777777777777653 5566
Q ss_pred HHHHHHHHhc
Q 009801 428 SRWALESYLK 437 (525)
Q Consensus 428 ~~l~~~~~~~ 437 (525)
..+|.++...
T Consensus 81 ~~l~~~~~~~ 90 (91)
T 1na3_A 81 QNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6667666544
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.36 E-value=4.2e-06 Score=64.44 Aligned_cols=80 Identities=19% Similarity=0.089 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----ChHHH
Q 009801 385 AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GYEVA 458 (525)
Q Consensus 385 ~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~a 458 (525)
.+++.+++.+|.+|.. .+++++|+.+|+++++.+| +.+++.+|.++...|++++|+.+|+++++. ++..+
T Consensus 4 p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp -CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred ccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 3577888888888887 8889999999998888864 678888899999999999999999888865 45555
Q ss_pred HHHHHHHHhh
Q 009801 459 QSNAAWILDK 468 (525)
Q Consensus 459 ~~~la~~~~~ 468 (525)
...+..++..
T Consensus 80 ~~~l~~~l~~ 89 (100)
T 3ma5_A 80 LSELQDAKLK 89 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556655544
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.33 E-value=5.8e-06 Score=63.66 Aligned_cols=80 Identities=11% Similarity=0.107 Sum_probs=64.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--- 312 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 312 (525)
+|+++.+++.+|.+|...+ ++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHD-----NASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhhc
Confidence 5688999999999998884 999999999999875 678899999999999 99999999999999864
Q ss_pred -CCHHHHHHHHHHHH
Q 009801 313 -QLYSAYNGIGYLYV 326 (525)
Q Consensus 313 -~~~~a~~~lg~~~~ 326 (525)
++......+..++.
T Consensus 74 ~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 74 EGTQKDLSELQDAKL 88 (100)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHH
Confidence 35555555555553
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.31 E-value=2.1e-05 Score=79.08 Aligned_cols=118 Identities=6% Similarity=-0.017 Sum_probs=93.7
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----C-
Q 009801 359 GVMYYKGIGVKRDVKLACKYFLVAANA-------GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER-----G- 422 (525)
Q Consensus 359 g~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-----~- 422 (525)
+..+.. ++++++|+..|+++++. +| ..++.+||.+|.. .+++++|+.+++++++. +
T Consensus 316 a~~~~~----qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~ 387 (490)
T 3n71_A 316 IDKARS----EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHH 387 (490)
T ss_dssp HHHHHT----TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCC
Confidence 344566 88999999999998864 23 4678899999988 89999999999999865 2
Q ss_pred -C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--hHH---HHHHHHHHHhhhCCCccccCCCCCCCChHhH
Q 009801 423 -P---WSSLSRWALESYLKGDVGKAFLLYSRMAEL-----G--YEV---AQSNAAWILDKYGEGSMCMGESGFCTDAERH 488 (525)
Q Consensus 423 -~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~--~~~---a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (525)
+ ...+.+||.+|..+|++++|+.+|++|++. | ++. ...+++.++.. ++.+
T Consensus 388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----------------~~~~ 451 (490)
T 3n71_A 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----------------LRMF 451 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----------------HHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----------------HHHH
Confidence 2 446789999999999999999999999853 2 333 45667777766 7789
Q ss_pred HHHHHHHHHHHh
Q 009801 489 QCAHSLWWQASE 500 (525)
Q Consensus 489 ~~A~~~~~~a~~ 500 (525)
++|...|+++.+
T Consensus 452 ~~ae~~~~~~~~ 463 (490)
T 3n71_A 452 RQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.30 E-value=8.1e-06 Score=64.53 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 338 KAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATA 413 (525)
Q Consensus 338 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~ 413 (525)
+|+..|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++. .+..+++++|.++.. .+++++|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHH
Confidence 466777777665 467777888888887 78888888888887766 567777888888876 778888888
Q ss_pred HHHHHHHcC
Q 009801 414 LYKLVAERG 422 (525)
Q Consensus 414 ~~~~a~~~~ 422 (525)
+|+++++..
T Consensus 75 ~~~~al~~~ 83 (115)
T 2kat_A 75 AWESGLAAA 83 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888887654
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.28 E-value=9.8e-06 Score=81.49 Aligned_cols=112 Identities=7% Similarity=-0.025 Sum_probs=91.6
Q ss_pred ccCHHHHHHHHHHHHhC-------CC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------CC---HHHHH
Q 009801 333 KKNYTKAKEYFEKAADN-------EE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-------GH---QKAFY 392 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~ 392 (525)
+|++++|+.+++++++. ++ ..++.+||.+|.. ++++++|..+++++++. +| ..+++
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56899999999988754 23 4577899999999 99999999999998864 23 45788
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----C--C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 393 QLAKMFHTGVGLKKNLHMATALYKLVAER-----G--P---WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 393 ~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-----~--~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
+||.+|.. .|++++|+.+|++|++. | + ......++.++..++.+++|...|.++.+
T Consensus 398 nLa~~~~~----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWH----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 99999999999999865 3 2 33456788889999999999999998865
No 202
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.25 E-value=0.00017 Score=75.45 Aligned_cols=205 Identities=10% Similarity=0.034 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHH-HHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHH
Q 009801 228 EAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKAL-MWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKA 302 (525)
Q Consensus 228 ~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~-~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A 302 (525)
.....|++++.. .+++.++..+......+ +.++|. ..|++|+.. .+...+..++.+... .++.++|
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~-----~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~----~~~~e~a 397 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKN-----TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL----NTKIPEI 397 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS-----CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHH
Confidence 345678887654 78999999999988774 667897 999999975 455667788888888 8899999
Q ss_pred HHHHHHHHHcC------------------------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-C--ChhHH
Q 009801 303 LEWLTHAARQQ------------------------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-E--EAGGH 355 (525)
Q Consensus 303 ~~~~~~a~~~~------------------------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-~--~~~a~ 355 (525)
...|++++... ...++.....+... .++.+.|...|.+|++. . ....+
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-----~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-----IQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 99999998641 11234444444443 35889999999999976 3 35566
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh-----HHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-----SSLS 428 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-----~a~~ 428 (525)
...+.+-... .++.+.|...|+++++. .++..+...+..... .++.+.|..+|++|+...+. ..+.
T Consensus 473 i~~A~lE~~~---~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~~~~~~lw~ 545 (679)
T 4e6h_A 473 LENAYIEYHI---SKDTKTACKVLELGLKYFATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDSHLLKMIFQ 545 (679)
T ss_dssp HHHHHHHHTT---TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666665551 34589999999999987 456555556665555 78999999999999988652 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.....-...|+.+.+...++++.+.
T Consensus 546 ~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 546 KVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444555789999999999999876
No 203
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.10 E-value=2.3e-05 Score=60.75 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---------PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYE 456 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~ 456 (525)
+..++.+|..+.. .+++..|+.||++|++.. ....+..+|.+++.+|++++|+.+++++++. +++
T Consensus 5 a~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 4556777777776 777777777777777541 2556788999999999999999999999865 577
Q ss_pred HHHHHHHH
Q 009801 457 VAQSNAAW 464 (525)
Q Consensus 457 ~a~~~la~ 464 (525)
.+..|+++
T Consensus 81 ~~~~n~~~ 88 (104)
T 2v5f_A 81 RANGNLKY 88 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHhhHHH
Confidence 77777773
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.00 E-value=5.1e-05 Score=58.76 Aligned_cols=72 Identities=10% Similarity=-0.076 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHH
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRMAEL---------GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~---------~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 494 (525)
+..++.+|..++..|+|..|+.||++|++. ..+..+.+||.++++ .+++++|+.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----------------~g~~~~A~~~ 68 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----------------QGDLDKALLL 68 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----------------ccCHHHHHHH
Confidence 566789999999999999999999999874 257789999999999 6689999999
Q ss_pred HHHHHhC--CCHHHHHHHH
Q 009801 495 WWQASEQ--GNEHAALLIG 511 (525)
Q Consensus 495 ~~~a~~~--~~~~a~~~lg 511 (525)
++++++. +++.++.+++
T Consensus 69 ~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 69 TKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHhhHH
Confidence 9999875 4788888877
No 205
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.96 E-value=0.0076 Score=60.77 Aligned_cols=361 Identities=11% Similarity=-0.061 Sum_probs=199.0
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhc-CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-----
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----- 156 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~----- 156 (525)
..+++.|..+...+- .++++.+...|+++... .+.+.+......-.. . ....+.....|+.|+.
T Consensus 12 ~~aR~vyer~l~~~P-------~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~-~--~~~~~~i~~~fe~al~~vg~d 81 (493)
T 2uy1_A 12 SSPSAIMEHARRLYM-------SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRK-V--SQKKFKLYEVYEFTLGQFENY 81 (493)
T ss_dssp CCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH-H--C----CTHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-h--CchHHHHHHHHHHHHHHcCCC
Confidence 446667777776663 37899999999998753 355555444333222 1 1134556777888875
Q ss_pred CCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhccc------chhhhhHhhhccCCc
Q 009801 157 GGNIQSKMAVAYTYLR----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNG------AEENKGALRKSRGED 226 (525)
Q Consensus 157 ~~~~~a~~~la~~y~~----~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 226 (525)
..+..........+.. +++.+.+...|++++...... .-.-...+.. .......+....+.+
T Consensus 82 ~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~--------~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y 153 (493)
T 2uy1_A 82 WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGS--------LSELWKDFENFELELNKITGKKIVGDTLPIF 153 (493)
T ss_dssp TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTT--------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhh--------HHHHHHHHHHHHHHhccccHHHHHHHHhHHH
Confidence 2455666666666543 467888999999987521000 0000000000 000001111112233
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCcc--CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCH
Q 009801 227 DEAFQILEYQAQK---GNAGAMYKIGLFYYFGLRGLRR--DRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 227 ~~A~~~~~~~~~~---~~~~a~~~Lg~~y~~~~~~~~~--~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
..|...++..... .....+......-.....+... ..+.....|++++. ...+..|...+..+.. .++.
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~ 229 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCH
Confidence 4444444443321 1232333333222111001111 14567789999988 4678899999999888 8999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC------------CChhHHHHHHHHHHcCCC
Q 009801 300 TKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------------EEAGGHYNLGVMYYKGIG 367 (525)
Q Consensus 300 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~lg~~y~~g~~ 367 (525)
++|...|++|+.. .......+...... .. ++...-+.++... .....+...+....+
T Consensus 230 ~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r--- 298 (493)
T 2uy1_A 230 EKAKKVVERGIEM-SDGMFLSLYYGLVM----DE---EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK--- 298 (493)
T ss_dssp HHHHHHHHHHHHH-CCSSHHHHHHHHHT----TC---THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHhhc----ch---hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH---
Confidence 9999999999987 22222222222211 01 1111111111100 112445666667667
Q ss_pred CcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHH
Q 009801 368 VKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 368 ~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A 443 (525)
.++.+.|...|++| ... ....+...+.+-.. ..++.+.|...|+++++..+ +..+...+......|+.+.|
T Consensus 299 -~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 299 -KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp -HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred -cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 77899999999999 432 23334333444332 13479999999999998653 34444556667788999999
Q ss_pred HHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 444 ~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
...|+++. .....+.....+-..+ |+.+.+...++++.
T Consensus 374 R~l~er~~--k~~~lw~~~~~fE~~~----------------G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 374 RALFKRLE--KTSRMWDSMIEYEFMV----------------GSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHSC--CBHHHHHHHHHHHHHH----------------SCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH
Confidence 99999983 2344444444444443 34556666666665
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.85 E-value=0.00014 Score=66.23 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=84.2
Q ss_pred CCChhHHHHHHHHHHcC-------CCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCC-CcCCHHHHHHHHH
Q 009801 349 NEEAGGHYNLGVMYYKG-------IGVKRDVKLACKYFLVAANAG----HQKAFYQLAKMFHTGVG-LKKNLHMATALYK 416 (525)
Q Consensus 349 ~~~~~a~~~lg~~y~~g-------~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~y~~g~g-~~~~~~~A~~~~~ 416 (525)
.++++++++.|.+...- .+......+|...++++++++ +..++..+|.+|..-=. .-|+.++|.++|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 36788888887766441 234567888999999999884 35699999999986110 1389999999999
Q ss_pred HHHHcCC---hHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Q 009801 417 LVAERGP---WSSLSRWALESYL-KGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 417 ~a~~~~~---~~a~~~l~~~~~~-~g~~~~A~~~~~~a~~~~ 454 (525)
+|++++| ..+.+.+|..++. .|++++|..++++|+...
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 9999975 6788899998888 499999999999999874
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.85 E-value=3.8e-05 Score=58.56 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=30.2
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH-HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK-AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~-a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
..|..+.. .+++++|+..|+++++. .++. +++.+|.+|.. .+++++|+.+|+++++.+
T Consensus 5 ~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 34445555 55555555555555544 3344 55555555554 555555555555555554
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.83 E-value=6e-05 Score=74.48 Aligned_cols=80 Identities=9% Similarity=-0.061 Sum_probs=67.8
Q ss_pred cCCHHHHHHHHHHHHHc-----CC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-----hHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAER-----GP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL-----G-----YEVAQSNAAW 464 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~-----~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~-----~~~a~~~la~ 464 (525)
.+++++|+..|+++++. ++ ...+.++|.+|..+|++++|+.+++++++. | ....++|||.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 56899999999999865 22 456789999999999999999999999854 2 3558899999
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
+|.. ++++++|+.+|++|++
T Consensus 391 ~~~~----------------qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMG----------------LENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHH----------------TTCHHHHHHHHHHHHH
T ss_pred HHHh----------------ccCHHHHHHHHHHHHH
Confidence 9998 7789999999999986
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.79 E-value=0.00019 Score=65.39 Aligned_cols=103 Identities=12% Similarity=0.012 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHc-------CCCCcCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 009801 385 AGHQKAFYQLAKMFHT-------GVGLKKNLHMATALYKLVAERGP----WSSLSRWALESYLK-----GDVGKAFLLYS 448 (525)
Q Consensus 385 ~~~~~a~~~l~~~y~~-------g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~~-----g~~~~A~~~~~ 448 (525)
.+++++++|.|..... |.+......+|...+++|+++++ ..++..+|.+|... |+.++|..+|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 4688999999887632 22355678999999999999986 34889999998885 99999999999
Q ss_pred HHHHcC---hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 449 RMAELG---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 449 ~a~~~~---~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+|++.+ +..+.+.+|..+... .+++++|..++++|+...
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~---------------~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIP---------------LNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTT---------------TTCHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCCchHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHcCC
Confidence 999873 388888888877551 478999999999999855
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.78 E-value=0.00013 Score=55.55 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHH
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS-SLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQ 459 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~-a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~ 459 (525)
+..|..+.. .+++++|+..|+++++..+ .. +++.+|.++...|++++|+.+|+++++.. ++.++
T Consensus 4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 567777876 8899999999999998864 56 88899999999999999999999998873 44444
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.70 E-value=0.00077 Score=64.00 Aligned_cols=66 Identities=12% Similarity=-0.063 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh
Q 009801 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 386 ~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 455 (525)
.++.++..++.++.. .+++++|+.++++|+.+++ ..++..+|.++...|++++|+..|++|+..++
T Consensus 275 ~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 466677677776665 6888888888888888874 44556778888888888888888888887743
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.66 E-value=0.00018 Score=71.02 Aligned_cols=81 Identities=21% Similarity=0.141 Sum_probs=62.1
Q ss_pred cCCcHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------CC---HHHH
Q 009801 223 RGEDDEAFQILEYQAQK-------GN---AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GE---PQSM 282 (525)
Q Consensus 223 ~~~~~~A~~~~~~~~~~-------~~---~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~ 282 (525)
.|++++|+..++++.+. ++ ..++.+||.+|...| ++++|+.+++++++. ++ +..+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-----~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-----DWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 34455555555554331 23 467889999998884 999999999999864 34 3578
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 283 EFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 283 ~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
++||.+|.. +|++++|+.+|++|++.
T Consensus 386 ~nLa~~~~~----qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 386 LKLGRLYMG----LENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----ccCHHHHHHHHHHHHHH
Confidence 999999999 99999999999999764
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.66 E-value=0.0033 Score=59.74 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHh--CCC-CCccCHHHHHH-HHHHHH----hCCChhHHHHHHHHHHcC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVK--GYG-VEKKNYTKAKE-YFEKAA----DNEEAGGHYNLGVMYYKG 365 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~--g~~-~~~~~~~~A~~-~~~~a~----~~~~~~a~~~lg~~y~~g 365 (525)
..+..+|+.+|++|++.. ++.++..++.+|.. +.+ ... ....++. .++.+. ...++.++..++..+..
T Consensus 212 ~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~-~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~- 289 (372)
T 3ly7_A 212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE-KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV- 289 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCH-HHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCch-hhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-
Confidence 345678888888887764 66677666666532 111 111 1112222 222211 22567788888888888
Q ss_pred CCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHH
Q 009801 366 IGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVG 441 (525)
Q Consensus 366 ~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~ 441 (525)
.+++++|+.++++|+.++ +..++..+|.++.. .|++++|++.|.+|+.++|....+.+.......-+.+
T Consensus 290 ---~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F~sn~~ 359 (372)
T 3ly7_A 290 ---KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVP 359 (372)
T ss_dssp ---HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSSCCCHH
T ss_pred ---CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcChHHHHhCceeecchh
Confidence 899999999999999884 55566788999987 9999999999999999988655554444333333333
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.66 E-value=0.0055 Score=61.89 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCC----CCCccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcC
Q 009801 296 ERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGY----GVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKG 365 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~----~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 365 (525)
.|+.++|+..|++..+.| +..++..|=..+.... ....++.++|...|++..+.+ +..++..|-..|..
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~- 117 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA- 117 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-
Confidence 678888888888777665 4555555544443211 112235778888888877664 55677778888888
Q ss_pred CCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCC
Q 009801 366 IGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---PWSSLSRWALESYLKGD 439 (525)
Q Consensus 366 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~~g~ 439 (525)
.++.++|...|++..+.| +...+..+=..|.. .++.++|.+.+++..+.+ +...+..+-..+...|+
T Consensus 118 ---~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 118 ---KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp ---HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred ---cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 888888888888877664 55666666666665 788888888888888776 34556677777888888
Q ss_pred HHHHHHHHHHHHHcC
Q 009801 440 VGKAFLLYSRMAELG 454 (525)
Q Consensus 440 ~~~A~~~~~~a~~~~ 454 (525)
.++|...+++-.+.+
T Consensus 191 ~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 191 ADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888876653
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.62 E-value=0.00062 Score=55.76 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcC---CHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCc
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR---DVKLACKYFLVAANAG----HQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~---~~~~A~~~~~~a~~~~----~~~a~~~l~~~y~~g~g~~ 405 (525)
....+.+.|.+..+. .+.++.|++|+++.. .+ +.++++..++..++.+ +.+++++||..+.. .
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~----S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k----l 84 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----L 84 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH----c
Confidence 344444455544442 344555555555555 33 4445555555555543 23455555555544 5
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 009801 406 KNLHMATALYKLVAERGP 423 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~ 423 (525)
+++++|+++++++++..|
T Consensus 85 ~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp SCHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHhcCC
Confidence 555555555555555544
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.58 E-value=0.0009 Score=66.13 Aligned_cols=80 Identities=11% Similarity=-0.058 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHHHHHcC-----C-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-----hHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERG-----P-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL-----G-----YEVAQSNAAW 464 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~-----~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~-----~~~a~~~la~ 464 (525)
++++++|+..++++++.. + ...+.++|.+|..+|++++|+.+++++++. | ....++|||.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 679999999999998762 1 456789999999999999999999999854 2 3558889999
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
+|.. ++++++|+.+|++|++
T Consensus 380 ~~~~----------------~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 380 LQLH----------------QGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHH----------------TTCHHHHHHHHHHHHH
T ss_pred HHHh----------------cCCHHHHHHHHHHHHH
Confidence 9998 7789999999999986
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00039 Score=56.96 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=72.4
Q ss_pred hHhHHHHHHHHHHHHh--cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHhccccHHH
Q 009801 105 VRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG----NIQSKMAVAYTYLRQDMHDK 178 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~la~~y~~~~~~~~ 178 (525)
+.....+.+.|.+... +.+.++.+.+|..+.. ...+.+.++++..++..++.+ +.+++|.||..|.+.++|++
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 5667777888887654 5678999999998887 112347789999999998866 46899999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 009801 179 AVKLYAELAEIAVNS 193 (525)
Q Consensus 179 A~~~y~~~~~~~~~~ 193 (525)
|+++++++++..|.+
T Consensus 90 A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999987654
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.48 E-value=0.00018 Score=54.24 Aligned_cols=70 Identities=9% Similarity=-0.111 Sum_probs=54.9
Q ss_pred hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 009801 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (525)
Q Consensus 120 ~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~ 190 (525)
++.+++.+..+|.++....+ ....++|..++++|+. .+++.+++.+|..+...|+|++|+.+++++++.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~-~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHK-QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTT-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56788888888887653111 3347899999999865 5689999999999999999999999999887653
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.46 E-value=0.00058 Score=51.37 Aligned_cols=69 Identities=6% Similarity=0.001 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
+.+++.+..+|.++...+ ......+|..+++++++. +++.+.+.+|.+++. .+++++|+.+++++++..
T Consensus 3 p~~~~~~~~~a~al~~~~--~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLH--KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTT--TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence 567888888888886542 112468888888888765 678888888888888 888888888888888765
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.41 E-value=0.0014 Score=64.78 Aligned_cols=81 Identities=7% Similarity=-0.141 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----C--C---hHHHH
Q 009801 369 KRDVKLACKYFLVAANA-------GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER-----G--P---WSSLS 428 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-----~--~---~~a~~ 428 (525)
++++++|+..++++++. .| ..++.+|+.+|.. .+++++|+.+++++++. + + ...++
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 57889999999998864 23 4678889999987 89999999999999865 2 2 44678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+||.+|..+|++++|+.+|++|++.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999864
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.37 E-value=0.031 Score=56.35 Aligned_cols=150 Identities=15% Similarity=0.050 Sum_probs=117.6
Q ss_pred ccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcCCC-----CcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Q 009801 333 KKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIG-----VKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTG 401 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~-----~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g 401 (525)
.|+.++|+..|++..+.| +..++..|=.++..... ..++.++|...|+...+.| +...+..+-..|..
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~- 117 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA- 117 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-
Confidence 569999999999998875 45566666555554211 2345889999999887764 66777888788887
Q ss_pred CCCcCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---hHHHHHHHHHHHhhhCCCccc
Q 009801 402 VGLKKNLHMATALYKLVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMC 475 (525)
Q Consensus 402 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~a~~~la~~~~~~~~~~~~ 475 (525)
.++.++|.+.+++..+.+ +...+..+-..+...|+.++|...+++..+.| +...+..+-..+.+
T Consensus 118 ---~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~------- 187 (501)
T 4g26_A 118 ---KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD------- 187 (501)
T ss_dssp ---HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-------
T ss_pred ---cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh-------
Confidence 899999999999998886 35567778888999999999999999998875 66677777777766
Q ss_pred cCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 476 MGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 476 ~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.++.++|...+++--+.+
T Consensus 188 ---------~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 188 ---------TKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp ---------TTCHHHHHHHHHHHHHHT
T ss_pred ---------CCCHHHHHHHHHHHHHhC
Confidence 667899999999876654
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.94 E-value=0.068 Score=41.99 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=70.3
Q ss_pred hHhHHHHHHHHHHHHh--cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCC----HHHHHHHHHHHhccccHHH
Q 009801 105 VRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN----IQSKMAVAYTYLRQDMHDK 178 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~----~~a~~~la~~y~~~~~~~~ 178 (525)
+.....+...|.+... ..+..+.|.+|..+.. ...+.+..+++..++...+.++ -+.++.||..+.+.++|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 4556777777777654 5678999999998776 2225566779999999988764 4789999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 009801 179 AVKLYAELAEIAVNS 193 (525)
Q Consensus 179 A~~~y~~~~~~~~~~ 193 (525)
|..+.+.+++..|.+
T Consensus 93 A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999886654
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.85 E-value=0.28 Score=38.47 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHhcCCHHHHHH
Q 009801 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WSSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 372 ~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~~g~~~~A~~ 445 (525)
...+...|.+.... ....+.+++|+++.. .....+..+++..++..+..++ -+..+.||..+++.|+|.+|+.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444455555443 345666666666654 1122334446666666665542 2456677777777777777777
Q ss_pred HHHHHHHc
Q 009801 446 LYSRMAEL 453 (525)
Q Consensus 446 ~~~~a~~~ 453 (525)
+.+..++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777655
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.80 E-value=0.062 Score=44.27 Aligned_cols=98 Identities=8% Similarity=0.004 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS 316 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~ 316 (525)
..+++.+|+.++.. ++|.+|...|++|++. .++.+...++ . ......... ...+.+
T Consensus 63 ~~~l~~ladalf~~-----~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~-~-------~ss~p~s~~------~~~e~E 123 (167)
T 3ffl_A 63 YQLLVYHADSLFHD-----KEYRNAVSKYTMALQQKKALSKTSKVRPSTG-N-------SASTPQSQC------LPSEIE 123 (167)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHCC----------------------------C------CCCHHH
T ss_pred HHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHHHHhcCCCcccccc-c-------cCCCccccc------ccchHH
Confidence 35788899999888 4999999999999864 1221111111 0 001110000 012456
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHH-HhCCChhHHHHHHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKA-ADNEEAGGHYNLGVMYY 363 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a-~~~~~~~a~~~lg~~y~ 363 (525)
..+.++.||.. .+++++|+..++.. .+.-.+.....||.+|.
T Consensus 124 lkykia~C~~~-----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 124 VKYKLAECYTV-----LKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 77888888877 45888888887775 34567777777777763
No 225
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.78 E-value=1.8 Score=43.26 Aligned_cols=339 Identities=9% Similarity=-0.074 Sum_probs=181.0
Q ss_pred CCCCCCCccccCCCCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh-----cCChHHHHHHHHhhhcCCCcc
Q 009801 67 LDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM-----EGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~y~~g~g~~ 141 (525)
++++.+..+|++++..- | ...+=..|+......+. ..+.....|+++.. +.+...+......+.......
T Consensus 28 ~~~e~~~~iferal~~~-p--s~~LW~~Y~~f~~~~~~--~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS-Y--NLDLWMLYIEYVRKVSQ--KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp TCHHHHHHHHHHHSTTC-C--CHHHHHHHHHHHHHHC------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCHHHHHHHHHHHhccC-C--CHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 34556777788886643 3 22333333332222221 23445566777653 445666666666655322224
Q ss_pred CCHHHHHHHHHHHHcCC--CHHHHHHHHHHHh--------------ccccHHHHHHHHHHHHHHHHhhhhccCCCCCchh
Q 009801 142 RNKGKAFLYHHFAAEGG--NIQSKMAVAYTYL--------------RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~~--~~~a~~~la~~y~--------------~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~ 205 (525)
++.+.+...|++|+... +..-+...-..+. ....+..|...|+.+...-+.. .
T Consensus 103 ~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~-----------s 171 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW-----------S 171 (493)
T ss_dssp HHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------S
T ss_pred HHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-----------c
Confidence 56788999999998742 2211111111111 1233444555555544322110 0
Q ss_pred hhhcccchhhhhHhhhcc--CC-----cHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc
Q 009801 206 IRIHNGAEENKGALRKSR--GE-----DDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (525)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~--~~-----~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (525)
. ..+.......... +- .......|++++. +..+..++..+..+... ++.++|...|++|+..
T Consensus 172 ~----~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~-----~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 172 V----KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI-----GQKEKAKKVVERGIEM 242 (493)
T ss_dssp H----HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhC
Confidence 0 0111111111111 11 2345678888877 57899999999998877 4999999999999987
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---H-------cC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAA---R-------QQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~---~-------~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~ 344 (525)
.......+......- .. +...-+..+. + .. ....+...+..... .++.+.|...|+
T Consensus 243 -P~~~~l~~~y~~~~e---~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r-----~~~~~~AR~i~~ 310 (493)
T 2uy1_A 243 -SDGMFLSLYYGLVMD---EE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK-----KRGLELFRKLFI 310 (493)
T ss_dssp -CCSSHHHHHHHHHTT---CT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH-----HHCHHHHHHHHH
T ss_pred -CCcHHHHHHHHhhcc---hh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH-----cCCHHHHHHHHH
Confidence 322222222222210 11 1111111110 0 00 11233334444433 347899999999
Q ss_pred HHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 345 KAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE 420 (525)
Q Consensus 345 ~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~ 420 (525)
+| ... ....+...+.+-.. ..++.+.|...|+++++. +.+..+......... .++.+.|...|+++.
T Consensus 311 ~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~----~~~~~~aR~l~er~~- 381 (493)
T 2uy1_A 311 EL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR----IGDEENARALFKRLE- 381 (493)
T ss_dssp HH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHSC-
T ss_pred Hh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH-
Confidence 99 432 23344444544433 033699999999999986 345444444544444 788999999999883
Q ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 421 RGPWSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 421 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.....+......-...|+.+.+...++++.+
T Consensus 382 -k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233344444444567999999999998874
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.14 E-value=0.1 Score=42.98 Aligned_cols=115 Identities=5% Similarity=-0.122 Sum_probs=67.8
Q ss_pred ccCHHHHHHHHHHHHhC--CChh---------HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHH
Q 009801 333 KKNYTKAKEYFEKAADN--EEAG---------GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAK 396 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~--~~~~---------a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~ 396 (525)
.+.|+-|+-....++.. ++++ +++.+|+.++. .++|.+|...|++|++.. .+.+...++
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~- 107 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNAVSKYTMALQQKKALSKTSKVRPSTG- 107 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHCC------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHHHhcCCCcccccc-
Confidence 45677777666664432 2222 56777777777 777888888777777541 111110111
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcChHHHHHHHHHHH
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAER-GPWSSLSRWALESYLKGDVGKAFLLYSRM-AELGYEVAQSNAAWIL 466 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~a~~~la~~~ 466 (525)
........ ... .+.+.-+.++.++...+++++|+..++.. .+...+.....||.+|
T Consensus 108 -------~~ss~p~s-------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 108 -------NSASTPQS-------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred -------ccCCCccc-------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 00011110 001 12456788999999999999999998876 3456777777788765
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.93 E-value=1.1 Score=37.45 Aligned_cols=43 Identities=14% Similarity=-0.064 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAEL 186 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~ 186 (525)
.|+.+.|.+..+.. ++..-+..||...+..++++-|...|.++
T Consensus 18 lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455554443332 44445555555555555555555555544
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.92 E-value=1.9 Score=45.98 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=46.0
Q ss_pred hhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCH
Q 009801 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
+...+..++|++.. .++...+.++... +++++|.+.. ...+++..|..||.++.. .+++
T Consensus 639 l~~~~~~~~a~~~~------~~~~~~f~~~l~~--------~~~~~A~~~~---~~~~~~~~W~~la~~al~----~~~~ 697 (814)
T 3mkq_A 639 LEGQEYYEEALNIS------PDQDQKFELALKV--------GQLTLARDLL---TDESAEMKWRALGDASLQ----RFNF 697 (814)
T ss_dssp HHHTTCHHHHHHHC------CCHHHHHHHHHHH--------TCHHHHHHHH---TTCCCHHHHHHHHHHHHH----TTCH
T ss_pred HHhCCChHHheecC------CCcchheehhhhc--------CCHHHHHHHH---HhhCcHhHHHHHHHHHHH----cCCH
Confidence 33445555555433 3444445554333 4888887764 334778888899999998 8899
Q ss_pred HHHHHHHHHH
Q 009801 300 TKALEWLTHA 309 (525)
Q Consensus 300 ~~A~~~~~~a 309 (525)
+.|+.+|.++
T Consensus 698 ~~A~~~y~~~ 707 (814)
T 3mkq_A 698 KLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999988875
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.46 E-value=0.46 Score=37.96 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 409 HMATALYKLVAERGP---WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++..++.....++ -+..+.+|..+++.|+|.+|+++.+..++.
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444443322 234455555555555555555555555544
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.01 E-value=3.5 Score=34.43 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYN 319 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 319 (525)
.|++.-|.|+.-. +|++.|.+..+.. ++...|..||..... .++.+-|+.+|+++ ++...+.
T Consensus 6 ~D~~~rF~LAL~l--------g~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~----~gn~~lAe~cy~~~---~D~~~L~ 67 (177)
T 3mkq_B 6 QDPHIRFDLALEY--------GNLDAALDEAKKL---NDSITWERLIQEALA----QGNASLAEMIYQTQ---HSFDKLS 67 (177)
T ss_dssp SCHHHHHHHHHHT--------TCHHHHHHHHHHH---CCHHHHHHHHHHHHH----TTCHHHHHHHHHHT---TCHHHHH
T ss_pred CChHHHHHHHHhc--------CCHHHHHHHHHHh---CCHHHHHHHHHHHHH----cCChHHHHHHHHHh---CCHHHHH
Confidence 3566666666554 4788887775443 677788888888887 78888888888774 3333333
Q ss_pred HHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 320 ~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
.| |.. .|+.++-.+.-+.+...++....+.. +.. .++.+++++.|.+
T Consensus 68 ~L---y~~-----tg~~e~L~kla~iA~~~g~~n~af~~---~l~----lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 68 FL---YLV-----TGDVNKLSKMQNIAQTREDFGSMLLN---TFY----NNSTKERSSIFAE 114 (177)
T ss_dssp HH---HHH-----HTCHHHHHHHHHHHHHTTCHHHHHHH---HHH----HTCHHHHHHHHHH
T ss_pred HH---HHH-----hCCHHHHHHHHHHHHHCccHHHHHHH---HHH----cCCHHHHHHHHHH
Confidence 22 222 23555555555555555544443332 233 5666666666643
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.83 E-value=1.4 Score=35.52 Aligned_cols=102 Identities=14% Similarity=-0.011 Sum_probs=69.1
Q ss_pred HHhCCChhHHHHHHHHHHcCCCCcCCH------HHHHHHHHHHHHcC------C--HHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 346 AADNEEAGGHYNLGVMYYKGIGVKRDV------KLACKYFLVAANAG------H--QKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 346 a~~~~~~~a~~~lg~~y~~g~~~~~~~------~~A~~~~~~a~~~~------~--~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
.+...++++|......... .++. ++-...|++|+..- . ..++.++-.+... ..+|.++|
T Consensus 7 ~~~p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~---ei~D~d~a 79 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK---AIQEPDDA 79 (161)
T ss_dssp ---CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH---HHHCGGGC
T ss_pred eeCCCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH---HhcCHHHH
Confidence 3455778888888887777 5666 77778888887541 1 1233333322222 15899999
Q ss_pred HHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 412 TALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 412 ~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
...|+.++.... +..+...|..-.++|+.++|+..+.+|+.++
T Consensus 80 R~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 80 RDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 999999987754 3344445555667999999999999999885
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.80 E-value=0.74 Score=36.29 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 409 HMATALYKLVAERGP---WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++..++.....++ -+.++.+|..+++.|+|.+|+++.+..++.
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344444444443332 234444455555555555555555544443
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.79 E-value=0.86 Score=35.91 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHH-hCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHH
Q 009801 335 NYTKAKEYFEKAA-DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHM 410 (525)
Q Consensus 335 ~~~~A~~~~~~a~-~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~ 410 (525)
+.....+-|++=. ..-.+.+.|++|+++..... ..+..+++..++...+.+ .-+.++.||..+.. .++|++
T Consensus 22 eL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~-~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk----lgdY~~ 96 (134)
T 3o48_A 22 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSM 96 (134)
T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHH
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH----hhhHHH
Confidence 3444444444422 22467899999999988433 456778999998888764 36789999999998 999999
Q ss_pred HHHHHHHHHHcCChH
Q 009801 411 ATALYKLVAERGPWS 425 (525)
Q Consensus 411 A~~~~~~a~~~~~~~ 425 (525)
|..+.+..++..|.+
T Consensus 97 Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 97 AKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhhCCCC
Confidence 999999999998643
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.64 E-value=12 Score=39.63 Aligned_cols=149 Identities=16% Similarity=0.137 Sum_probs=92.9
Q ss_pred cCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHH
Q 009801 261 RDRTKALM-WFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKA 339 (525)
Q Consensus 261 ~~~~~A~~-~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A 339 (525)
+++++|.+ ++.. + .+......+...+.. .+..++|++..+ ++...+.++.. .+++++|
T Consensus 613 ~~~~~a~~~~l~~-i--~~~~~~~~~~~~l~~----~~~~~~a~~~~~------~~~~~f~~~l~--------~~~~~~A 671 (814)
T 3mkq_A 613 GEIEEAIENVLPN-V--EGKDSLTKIARFLEG----QEYYEEALNISP------DQDQKFELALK--------VGQLTLA 671 (814)
T ss_dssp TCHHHHHHHTGGG-C--CCHHHHHHHHHHHHH----TTCHHHHHHHCC------CHHHHHHHHHH--------HTCHHHH
T ss_pred CCHHHHHHHHHhc-C--CchHHHHHHHHHHHh----CCChHHheecCC------Ccchheehhhh--------cCCHHHH
Confidence 37888766 4410 0 101122445555666 777787775542 33444444432 2488888
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 340 KEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 340 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
.+.. ...+++..+..+|..+.. .++++.|...|.++- +... +..++.. .++.++....-+.+.
T Consensus 672 ~~~~---~~~~~~~~W~~la~~al~----~~~~~~A~~~y~~~~---d~~~---l~~l~~~----~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 672 RDLL---TDESAEMKWRALGDASLQ----RFNFKLAIEAFTNAH---DLES---LFLLHSS----FNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHT---CHHH---HHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHH---HhhCcHhHHHHHHHHHHH----cCCHHHHHHHHHHcc---Chhh---hHHHHHH----cCCHHHHHHHHHHHH
Confidence 8764 345788899999999999 999999999999753 3332 3344443 556676666666666
Q ss_pred HcCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 420 ERGPWSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 420 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
..+....... ++...|++++|++.|.+.
T Consensus 735 ~~~~~~~A~~---~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGKFNLAFN---AYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTCHHHHHH---HHHHHTCHHHHHHHHHHT
T ss_pred HcCchHHHHH---HHHHcCCHHHHHHHHHHc
Confidence 6655433222 366688999999888543
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.79 E-value=1.8 Score=34.96 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=71.3
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCcCCH------HHHHHHHHHHHHcCChH----------HHHHHHHHHHhcCCHHHHHH
Q 009801 382 AANAGHQKAFYQLAKMFHTGVGLKKNL------HMATALYKLVAERGPWS----------SLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 382 a~~~~~~~a~~~l~~~y~~g~g~~~~~------~~A~~~~~~a~~~~~~~----------a~~~l~~~~~~~g~~~~A~~ 445 (525)
.+...+++.+.......+. .++. ++-++.|++|+..-|+. -+.+.+. +...+|.++|..
T Consensus 7 ~~~p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~ 81 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARD 81 (161)
T ss_dssp ---CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHH
T ss_pred eeCCCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHH
Confidence 3455788888888888876 5666 78889999999876542 2334453 356689999999
Q ss_pred HHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 446 LYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 446 ~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.|+.+++.....|..++++..+.. .+++..+|.+.+.+|+.++
T Consensus 82 vy~~a~~~hKkFAKiwi~~AqFEi--------------Rqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 82 YFQMARANCKKFAFVHISFAQFEL--------------SQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHCTTBHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH--------------HcccHHHHHHHHHHHhccC
Confidence 999998763222444444444431 1778999999999999987
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.29 E-value=4.3 Score=32.38 Aligned_cols=74 Identities=5% Similarity=-0.010 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L 314 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~ 314 (525)
-.+.+.|+++.++.+. ..+.+..+++..++..++.+ .-+.++.||.-+.+ .++|++|.++.+..++.. +
T Consensus 37 vs~~t~F~YAw~Lv~S--~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk----l~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKS--TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHTCCCC
T ss_pred CcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcCCCc
Confidence 4788999999998888 45667889999999988753 34688999999999 999999999999998764 4
Q ss_pred HHHHH
Q 009801 315 YSAYN 319 (525)
Q Consensus 315 ~~a~~ 319 (525)
..+..
T Consensus 111 ~QA~~ 115 (144)
T 1y8m_A 111 KQVGA 115 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.29 E-value=11 Score=36.21 Aligned_cols=89 Identities=24% Similarity=0.209 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----
Q 009801 283 EFLGEIYARGAGVERNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----- 349 (525)
Q Consensus 283 ~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----- 349 (525)
..||.+|.. .+++.+|...+.+..+. + -.+.+..-..+|.. .+|+.++...+.+|...
T Consensus 103 ~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-----~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 103 ARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-----LSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHhhhccCC
Confidence 467888888 88888888888877652 1 23344445555554 45888888888877533
Q ss_pred CChhHH----HHHHHHHH-cCCCCcCCHHHHHHHHHHHHH
Q 009801 350 EEAGGH----YNLGVMYY-KGIGVKRDVKLACKYFLVAAN 384 (525)
Q Consensus 350 ~~~~a~----~~lg~~y~-~g~~~~~~~~~A~~~~~~a~~ 384 (525)
.+|... ..-|.++. . .+++.+|..+|-.+.+
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~----~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAAD----ERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHh----ccCHHHHHHHHHHHHh
Confidence 223222 34577777 7 8899999888877753
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.97 E-value=1.3 Score=44.11 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE 420 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~ 420 (525)
..||++... ......|..||.+|... ++...++.||.+... .++.-.|+.+|-+++.
T Consensus 156 ~~LGDL~RY----~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 156 VHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHS
T ss_pred HHcccHHHH----HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHHHHHHHHHh
Confidence 344555544 44445555555554444 334444455554443 4444445555554443
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.13 E-value=31 Score=37.04 Aligned_cols=348 Identities=11% Similarity=0.036 Sum_probs=180.3
Q ss_pred ccHHHHHHHHHHHhhcCCh--HhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc---CCC--
Q 009801 87 GSYYITISKMMSAVTNGDV--RVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE---GGN-- 159 (525)
Q Consensus 87 a~~~l~~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~---~~~-- 159 (525)
+...++..........|.- .-+..-..|+-++.+.+-..|...||.++.. +.++++..+.+-+. .++
T Consensus 337 s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g------~~~~gl~~L~~yL~~~~s~~~~ 410 (963)
T 4ady_A 337 SLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKG------NLLEGKKVMAPYLPGSRASSRF 410 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSS------CTTTHHHHHTTTSTTSCCSCHH
T ss_pred hHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccC------chHHHHHHHHHhccccCCCcHH
Confidence 4455555554443333332 2233334576665444556677788888763 66677777776554 232
Q ss_pred --HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH
Q 009801 160 --IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (525)
Q Consensus 160 --~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 237 (525)
..|++.+|.++...++ +++.++...+...... .|+- .....
T Consensus 411 ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~-----------------------------~~~~--~~~~i---- 453 (963)
T 4ady_A 411 IKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGT-----------------------------SGDE--DVDVL---- 453 (963)
T ss_dssp HHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSC-----------------------------CSCH--HHHHH----
T ss_pred HHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCcccc-----------------------------cccc--ccHHH----
Confidence 3678888888877664 5666665544321100 0000 00000
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP----QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
...+...||.+|.-. .-++++..+...+..+++ .+.+.||.++.- .++.+-....+..+.+..
T Consensus 454 ---r~gAaLGLGla~~GS------~~eev~e~L~~~L~dd~~~~~~~AalALGli~vG----Tgn~~ai~~LL~~~~e~~ 520 (963)
T 4ady_A 454 ---LHGASLGIGLAAMGS------ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLG----TGKPEAIHDMFTYSQETQ 520 (963)
T ss_dssp ---HHHHHHHHHHHSTTC------CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHCS
T ss_pred ---HHHHHHHHHHHhcCC------CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc----cCCHHHHHHHHHHHhccC
Confidence 013566788887643 335677777777765553 355667877775 777776666666666554
Q ss_pred CHH----HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhH----HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 314 LYS----AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG----HYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 314 ~~~----a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a----~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+.. +...||.++. ++.+.+-...+......++.. .+.+|..|.. .++...-...+..+...
T Consensus 521 ~e~vrR~aalgLGll~~-------g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaG----TGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 521 HGNITRGLAVGLALINY-------GRQELADDLITKMLASDESLLRYGGAFTIALAYAG----TGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp CHHHHHHHHHHHHHHTT-------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT----SCCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHhccC
Confidence 433 3344555543 244555555555554455443 3456777766 77755444466666654
Q ss_pred CCHH----HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcChHH
Q 009801 386 GHQK----AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS----RWALESYLKGDVGKAFLLYSRMAELGYEV 457 (525)
Q Consensus 386 ~~~~----a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~----~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 457 (525)
.+.. |...||.+.. ++.+.+...+....+..++..-+ .+|.+....++ .+++..+.+...-.+..
T Consensus 590 ~~d~VRraAViaLGlI~~------g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLL------RDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp SCHHHHHHHHHHHHHHTS------SSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHTCSSHH
T ss_pred CcHHHHHHHHHHHHhhcc------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHccCCCHH
Confidence 3322 3334444332 23333344443333444443333 33333323333 77888888887654433
Q ss_pred ----HHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC--CCHH----HHHHHHHHHHccccc
Q 009801 458 ----AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEH----AALLIGDAYYYGRVR 520 (525)
Q Consensus 458 ----a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~----a~~~lg~~y~~g~g~ 520 (525)
|...||.+...- ......+...-++-+.+.... .++. +.+-.|.++. |-|+
T Consensus 663 Vrq~Ai~ALG~Ig~gt-----------nna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a-G~~n 723 (963)
T 4ady_A 663 VRQAAMIALSMILIQQ-----------TEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA-GGRN 723 (963)
T ss_dssp HHHHHHHHHHHHSTTC-----------CTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT-GGGT
T ss_pred HHHHHHHHHHHHhcCC-----------ccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc-CCCc
Confidence 444555544220 000011455555555554542 2333 4445777775 6554
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.09 E-value=19 Score=34.47 Aligned_cols=156 Identities=12% Similarity=0.050 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----CC---HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---- 349 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~---~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---- 349 (525)
+.+.||.+|.. .++.++-.+++...... +. +.....|=..+.. + .+..+.-++....+++-
T Consensus 21 ~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~---~-~~~~~~~~~~~~~~~~~a~~~ 92 (394)
T 3txn_A 21 GILQQGELYKQ----EGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLD---M-DAGTGIEVQLCKDCIEWAKQE 92 (394)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTT---S-CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc---C-CCcHHHHHHHHHHHHHHHHHH
Confidence 45678888888 88888877777765321 11 1112222223322 1 22444445555555432
Q ss_pred CChh----HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 350 EEAG----GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 350 ~~~~----a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
.-.. ....||.+|.. .+++.+|...+.+..+. ++ .+.+..-..+|.. .+|+.++...|.+
T Consensus 93 ~r~flr~~l~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~~ 164 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALTS 164 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHHH
Confidence 1111 23478999999 99999999988887653 22 2344445666776 8899999999998
Q ss_pred HHHcC-----ChH--H--HHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 009801 418 VAERG-----PWS--S--LSRWALESY-LKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 418 a~~~~-----~~~--a--~~~l~~~~~-~~g~~~~A~~~~~~a~~ 452 (525)
|.... ++. + ...-|..+. ..++|++|..+|-++.+
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 85432 332 2 224577778 89999999999988864
No 241
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=86.44 E-value=3.5 Score=40.99 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHH
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYN 319 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 319 (525)
.+..||++..... .+..|..||.+|+.. ++...+..||.+... .++.-+|+.+|.+++.. +.+.+..
T Consensus 154 ~l~~LGDL~RY~~-----~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~y~y~rsl~~~~Pf~~a~~ 224 (497)
T 1ya0_A 154 CLVHLGDIARYRN-----QTSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIAVKFPFPAAST 224 (497)
T ss_dssp HHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred HHHHcccHHHHHH-----HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHHHHHHHHHhcCCCChhHHH
Confidence 5677899887773 789999999999875 678899999999998 88999999999999754 5788888
Q ss_pred HHHHHHHh
Q 009801 320 GIGYLYVK 327 (525)
Q Consensus 320 ~lg~~~~~ 327 (525)
+|...+..
T Consensus 225 nL~~~f~~ 232 (497)
T 1ya0_A 225 NLQKALSK 232 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888753
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.38 E-value=25 Score=32.34 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 009801 313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (525)
Q Consensus 313 ~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~ 344 (525)
|+++.+..+|..|.. .+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~-----e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLE-----GDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHH-----TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh-----cCCHHHHHHHHH
Confidence 566666666666665 336666666554
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.65 E-value=27 Score=32.13 Aligned_cols=63 Identities=11% Similarity=-0.019 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCCCc---cCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLR---RDRTKALMWFSKAA--DKGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~---~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
+.+..-.|..++..-....+ .=..+|++|-.+.- +.|++..+..+|..|.. .+++.+|..+|-
T Consensus 91 ~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~H~i 158 (312)
T 2wpv_A 91 DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE----GDFVYEAERYFM 158 (312)
T ss_dssp SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHH
Confidence 44455556666543210111 12456777766653 34899999999999999 899999998876
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.67 E-value=66 Score=34.59 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR 172 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~ 172 (525)
.+|.+.+.+.|.+..+.++....+.++..+.+
T Consensus 243 LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~ 274 (963)
T 4ady_A 243 LNDAGLALQLFKKLKEENDEGLSAQIAFDLVS 274 (963)
T ss_dssp HTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 45777777777777766677777777776654
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=77.86 E-value=22 Score=28.21 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIG 322 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 322 (525)
..++=-+.+...+.. -+|..+..+|..|.. .++..+|.+.+.+|++.|..+|+.++-
T Consensus 106 KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~K----lg~~r~a~eLl~~AC~kG~kEAC~~in 164 (172)
T 1wy6_A 106 KRDKLEEIGREILKNNEVSASILVAIANALRR----VGDERDATTLLIEACKKGEKEACNAVN 164 (172)
T ss_dssp CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHhHHHHHHHHHhccCCCChHHHHHHHHHHHH----hcchhhHHHHHHHHHHhhhHHHHHHHH
Confidence 444444444443222 236777777777777 777777777777777777777776654
No 246
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=77.62 E-value=19 Score=28.58 Aligned_cols=59 Identities=15% Similarity=0.006 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAA 463 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la 463 (525)
++.-++=-+.+...+...+ ++....+|.+|-+.|+.++|-+.+.+|++.|-.+|..++-
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kEAC~~in 164 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKEACNAVN 164 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444444444333333 6777788888888888888888888888888888777654
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.80 E-value=25 Score=36.90 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
.++++-|++.-++|+...| ...++.|+.+|..+|+++.|+-.+.-+
T Consensus 350 K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 7899999999999999975 678899999999999999999777654
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.49 E-value=24 Score=33.77 Aligned_cols=59 Identities=15% Similarity=0.053 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
+...++..+.. .+++.+|+..+.+++..+| ..++..+-.+++..|+..+|+..|++..+
T Consensus 173 a~~~~~~~~l~----~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIA----CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44456666666 8899999999999999885 56788888899999999999999998864
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=72.06 E-value=40 Score=27.75 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC------------
Q 009801 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------------ 349 (525)
Q Consensus 282 ~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~------------ 349 (525)
...++.++.. .|.+..++-.+. ..+...+.+.-..+|.. .+++.+|+..++..++.
T Consensus 36 ~lL~~I~Lyy----ngEY~R~Lf~L~---~lNT~Ts~YYk~LCy~k-----lKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 36 RMLMSIVLYL----NGEYTRALFHLH---KLNTCTSKYYESLCYKK-----KKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHH---TCCBHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred Hhhhhhhhhh----cchHhHHHHHHH---hcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccCccccccc
Confidence 3445555554 667777665543 35567777777777766 45888888888888732
Q ss_pred -------CChh-HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 350 -------EEAG-GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 350 -------~~~~-a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
++.+ .+..+|.+..+ .++.++|+.+|.++-...
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq----~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTL----SGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred ceeeeccchHHHHHHHHHHHHHH----hcCHHHhhhHhhhhcCCc
Confidence 1222 34568888988 999999999998876653
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=69.01 E-value=43 Score=36.38 Aligned_cols=92 Identities=10% Similarity=0.017 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---ChH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---PWS 425 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 425 (525)
+..|=..|.+ .++.++|...|...-+. -+...++.|=..|.. .|+.++|.+.|++..+.| +..
T Consensus 130 ynaLIdglcK----~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 130 LLAFFKCCLL----TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----QGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHH----HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCcHH
Confidence 3344444444 55555555555332211 133444444444443 455555555555555544 122
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHcC
Q 009801 426 SLSRWALESYLKGD-VGKAFLLYSRMAELG 454 (525)
Q Consensus 426 a~~~l~~~~~~~g~-~~~A~~~~~~a~~~~ 454 (525)
.+..+-..+.+.|+ .++|...+++-.+.|
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 33333334444444 244555555554443
No 251
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=68.43 E-value=45 Score=36.27 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---hHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAER-----G-PWSSLSRWALESYLKGDVGKAFLLYSRMAELG---YEVAQS 460 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-----~-~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~a~~ 460 (525)
.+..|=..|.. .|+.++|...+....+. . +...+..+-..+++.|+.++|...|++-.+.| +...++
T Consensus 129 TynaLIdglcK----~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 129 RLLAFFKCCLL----TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34455555665 89999999999776533 2 46677888889999999999999999999886 555555
Q ss_pred HHHHHHhhhCCCccccCCCCCCCChHh-HHHHHHHHHHHHhCC-CHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGFCTDAER-HQCAHSLWWQASEQG-NEHA 506 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~-~~~a 506 (525)
.+=..+.+ .++ .++|.+.+++-.+.| .++.
T Consensus 205 tLI~glcK----------------~G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 205 AALQCMGR----------------QDQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp HHHHHHHH----------------HTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCCCCh
Confidence 55555555 333 468889999888777 4443
No 252
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=66.96 E-value=11 Score=26.86 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++|+.+.++|++ .-..|++++|+.+|.++++.
T Consensus 16 ~~~Ai~lv~~Ave-------------~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVK-------------ADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHH
Confidence 4566666666654 46778888999988888874
No 253
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=65.33 E-value=57 Score=26.89 Aligned_cols=27 Identities=19% Similarity=-0.061 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+..+|.++-+.|+.++|+.++.+.-..
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 445677777777888888777766443
No 254
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=65.07 E-value=13 Score=26.57 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++|+.+.++|++ .-..|++++|+.+|..+++.
T Consensus 8 ~~~Ai~lv~~Ave-------------~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVK-------------ADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHH
Confidence 3566666666654 46778888888888888874
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=64.39 E-value=57 Score=34.18 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=33.7
Q ss_pred ccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
+++++-|+++.++|+.. ..-.+|+.|+.+|.. .++++.|+-.+...
T Consensus 350 K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~----l~d~e~ALLtLNSc 397 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALDSFESWYNLARCHIK----KEEYEKALFAINSM 397 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH----hccHHHHHHHHhcC
Confidence 45788888888887765 466677888888888 88888877666543
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.96 E-value=14 Score=35.98 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH-QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----G 422 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~-~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~ 422 (525)
..+...+|..|.. .|++++|.+.|.++.+. ++ .+.+..+-.++.. .+|+..+..++.++... +
T Consensus 131 ~~~~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~----~~d~~~~~~~~~ka~~~~~~~~ 202 (429)
T 4b4t_R 131 AQAWINLGEYYAQ----IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF----YNDQLYVKEKLEAVNSMIEKGG 202 (429)
T ss_dssp SSCCHHHHHHHHH----HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhhcCC
Confidence 3456667777777 77777777777665543 11 2333444444443 56777777777776433 1
Q ss_pred ChHH----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 423 PWSS----LSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 423 ~~~a----~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++.. ....|..+...++|.+|..+|-.+..
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2221 22335555666777777777766543
No 257
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=63.25 E-value=7.1 Score=27.88 Aligned_cols=14 Identities=7% Similarity=-0.266 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHc
Q 009801 440 VGKAFLLYSRMAEL 453 (525)
Q Consensus 440 ~~~A~~~~~~a~~~ 453 (525)
.++|+....+|++.
T Consensus 16 ~~~Ai~lv~~Ave~ 29 (83)
T 2w2u_A 16 EEMARKYAINAVKA 29 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35677777777654
No 258
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=61.56 E-value=7.9 Score=27.64 Aligned_cols=13 Identities=8% Similarity=-0.279 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHc
Q 009801 441 GKAFLLYSRMAEL 453 (525)
Q Consensus 441 ~~A~~~~~~a~~~ 453 (525)
++|+....+|++.
T Consensus 9 ~~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 9 DMARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677777777665
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.76 E-value=28 Score=33.74 Aligned_cols=93 Identities=19% Similarity=0.117 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-----QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---- 349 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---- 349 (525)
..++..+|..|.. .||+++|.+.|.+..+. ...+.+..+-.++.. .+|+..+..++.++-..
T Consensus 131 ~~~~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-----~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 131 AQAWINLGEYYAQ----IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-----YNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp SSCCHHHHHHHHH----HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhhhcC
Confidence 4577889999998 99999999999887653 134555555555544 45888888888877432
Q ss_pred CChhHH----HHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 350 EEAGGH----YNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (525)
Q Consensus 350 ~~~~a~----~~lg~~y~~g~~~~~~~~~A~~~~~~a~~ 384 (525)
+++... ..-|.++.. .+++.+|...|..+..
T Consensus 202 ~d~~~~~~lk~~~gl~~l~----~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLA----VRNFKEAAKLLVDSLA 236 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGG----TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH----hChHHHHHHHHHHHhc
Confidence 333322 234455555 6666666666655443
No 260
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=55.71 E-value=24 Score=25.75 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 405 KKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..-.++|+....+|++ .-..|++++|+.+|..+++.
T Consensus 9 ~~~l~~Ai~lv~~Ave-------------~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVE-------------LDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp CCHHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-------------HHHhCCHHHHHHHHHHHHHH
Confidence 3445677777777765 34567788888888777764
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=53.27 E-value=1.4e+02 Score=27.60 Aligned_cols=245 Identities=14% Similarity=0.091 Sum_probs=123.8
Q ss_pred CcHHHHHHHHHHHHcCCH----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCC
Q 009801 225 EDDEAFQILEYQAQKGNA----GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----KGEPQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~----~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~~~~ 296 (525)
+.++-+.-++..++.|+- +|+-.+=.++.+- -..+++++|++++-..+. .+...+-..|+.++..
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry--~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llve----- 83 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARY--SKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVD----- 83 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHH--HhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHH-----
Confidence 345556666666666654 4444433333222 223699999998777543 3444444444433322
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCcc------CHHHHHHHHHHHH--hCCChhHHHHHHHHHHcCCCC
Q 009801 297 RNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKK------NYTKAKEYFEKAA--DNEEAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~------~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~~~ 368 (525)
.|+++-..-+.+...+|..++.. .... =..+|++|-.+.- ..|+|+.+..+|..|.+
T Consensus 84 --------vy~~~~~~~~~~~~~rL~~L~~~---~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~---- 148 (336)
T 3lpz_A 84 --------TFRQAGQRVDGASRGKLLGCLRL---FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVE---- 148 (336)
T ss_dssp --------HHHHHTCCCCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHH----
T ss_pred --------HHHHcCCCCCHHHHHHHHHHHHh---CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----
Confidence 11111001122333334444322 1111 1346667766632 45899999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhcCCHHHHHHHH
Q 009801 369 KRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS-SLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
.+++.+|...|-.. ..+.++.+.. +.. +|+++.- ..... ...+....|...++...|...+
T Consensus 149 e~~~~~Ae~H~ilg-~~~s~~~~a~---mL~-------------ew~~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~ 210 (336)
T 3lpz_A 149 EGEFEAAEKHLVLG-TKESPEVLAR---MEY-------------EWYKQDE-SHTAPLYCARAVLPYLLVANVRAANTAY 210 (336)
T ss_dssp TTCHHHHHHHHTTS-CTTHHHHHHH---HHH-------------HHHHTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHhc-CCchHHHHHH---HHH-------------HHHHhcC-CccHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88999988877421 1111222222 211 1111100 01111 2234444577888999888876
Q ss_pred HHHHHc----Ch-----------------H-HHHHHHHH-HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCC-
Q 009801 448 SRMAEL----GY-----------------E-VAQSNAAW-ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN- 503 (525)
Q Consensus 448 ~~a~~~----~~-----------------~-~a~~~la~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~- 503 (525)
+...+. .. + ....|... ++..+. .+ ...-+..-..-|+..++...
T Consensus 211 ~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q--------~~---~~~lF~~L~~~Y~~~l~rd~~ 279 (336)
T 3lpz_A 211 RIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQ--------KG---SPDLFRQLKSKYEANLNELNG 279 (336)
T ss_dssp HHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHH--------SC---CHHHHHHHHHHTHHHHHTTTT
T ss_pred HHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHh--------cC---CHHHHHHHHHHHHHHHHhcHH
Confidence 655431 00 0 12223333 222210 00 03345556666677776653
Q ss_pred --HHHHHHHHHHHHcccccC
Q 009801 504 --EHAALLIGDAYYYGRVRH 521 (525)
Q Consensus 504 --~~a~~~lg~~y~~g~g~~ 521 (525)
...+-.+|.+|+ |+-.+
T Consensus 280 ~~~~~L~~IG~~YF-gi~~p 298 (336)
T 3lpz_A 280 IWDTALELIAEMYF-GIQRP 298 (336)
T ss_dssp TTHHHHHHHHHHHH-CCCCC
T ss_pred HHHHHHHHHHHHHc-CCCCC
Confidence 678889999999 77443
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=51.59 E-value=2.1e+02 Score=29.11 Aligned_cols=117 Identities=15% Similarity=-0.014 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-hH-HHHHHHHHHHhcCCHHHHH
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-WS-SLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~-a~~~l~~~~~~~g~~~~A~ 444 (525)
.++.+.|...+.+..+. -+......+-..........+...++..|+.++..... .. .....++ ....||++.|.
T Consensus 227 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr~~d~~~a~ 305 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLN 305 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHH
T ss_pred hcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-HHHCCCHHHHH
Confidence 55667777777665432 12222222222222111223325566667666544332 22 2223333 34557777777
Q ss_pred HHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 445 LLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 445 ~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.++++.... ..+...+++|..+.. .++.++|..+|++++...
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~----------------~g~~~~a~~~~~~~a~~~ 349 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLE----------------RGREAEAKEILHQLMQQR 349 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHTSC
T ss_pred HHHHHccccccccHhHHHHHHHHHHH----------------cCCHHHHHHHHHHHhcCC
Confidence 777665432 346667777777766 445567777777777543
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.45 E-value=1.4e+02 Score=28.82 Aligned_cols=59 Identities=17% Similarity=0.029 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----ChHH----HHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHH
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL-----GYEV----AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW 496 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~----a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 496 (525)
.+.....++...+|+.+|...+.++... .++. -....|.++.+ .++|.+|.++|.
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~----------------e~~y~~a~~~y~ 242 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLH----------------KREYLEVAQYLQ 242 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----------------HCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHHH
Confidence 3444455666777777777777766321 1222 22234444444 667777877777
Q ss_pred HHHh
Q 009801 497 QASE 500 (525)
Q Consensus 497 ~a~~ 500 (525)
.+.+
T Consensus 243 e~~~ 246 (445)
T 4b4t_P 243 EIYQ 246 (445)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.44 E-value=1.3e+02 Score=29.22 Aligned_cols=91 Identities=11% Similarity=-0.015 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH----c
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE----R 421 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~------~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~----~ 421 (525)
....|+.+|.. .+++.+|...+...... + -.+.+.....++.. .+|+.+|...++++.. .
T Consensus 139 l~~~La~i~e~----~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~----~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 139 VTKDLVEIKKE----EGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL----KGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhhccc
Confidence 34567777777 77777777776654321 1 12344444555555 6788888888877642 1
Q ss_pred C-ChH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 422 G-PWS----SLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 422 ~-~~~----a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
. ++. .+...|..+...++|.+|-.+|..+.+
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1 222 233567777778888888888877754
No 265
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=48.31 E-value=17 Score=26.54 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHc
Q 009801 440 VGKAFLLYSRMAEL 453 (525)
Q Consensus 440 ~~~A~~~~~~a~~~ 453 (525)
.++|+....+|++.
T Consensus 12 l~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 12 STAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45777777777765
No 266
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=45.60 E-value=40 Score=23.94 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 407 NLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 407 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..++|+....+|++ .-..|++++|+.+|..+++.
T Consensus 9 ~l~~A~~l~~~Av~-------------~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 9 FLTKGIELVQKAID-------------LDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHH
Confidence 35666666666653 35567888888888887764
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=44.53 E-value=1.9e+02 Score=26.68 Aligned_cols=40 Identities=23% Similarity=0.496 Sum_probs=28.4
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 264 TKALMWFSKAA--DKGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 264 ~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
.+|+.|-.+.- +.|++..+..+|.+|.. .+++.+|..+|-
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~----e~~~~~Ae~H~i 160 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVE----EGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHHT
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHH
Confidence 45666665532 34788888888888888 778888877763
No 268
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=44.12 E-value=35 Score=26.13 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++|+.+..+|++ .-..|++++|+.+|..|++.
T Consensus 15 l~kAi~lv~~Ave-------------~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQ-------------EDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHH-------------HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHccCHHHHHHHHHHHHHH
Confidence 5667777776653 34456777777777777663
No 269
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=44.02 E-value=34 Score=24.51 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 407 NLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 407 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
...+|+.+..+|++ .-..|++++|+.+|..+++.
T Consensus 12 ~~~~A~~lv~~Ave-------------~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 12 QSTAAATVLKRAVE-------------LDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHH
Confidence 34455555555554 35667888888888877754
No 270
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=43.36 E-value=22 Score=27.22 Aligned_cols=14 Identities=36% Similarity=0.256 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHc
Q 009801 440 VGKAFLLYSRMAEL 453 (525)
Q Consensus 440 ~~~A~~~~~~a~~~ 453 (525)
.++|+.+..+|++.
T Consensus 15 l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 15 LQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45777778777755
No 271
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=42.58 E-value=24 Score=25.15 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHc
Q 009801 440 VGKAFLLYSRMAEL 453 (525)
Q Consensus 440 ~~~A~~~~~~a~~~ 453 (525)
.++|+....+|++.
T Consensus 10 l~~A~~l~~~Av~~ 23 (85)
T 2v6x_A 10 LTKGIELVQKAIDL 23 (85)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777644
No 272
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=41.48 E-value=45 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.+-+.+..+...|+|++||++.++|+.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344778888999999999999998874
No 273
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=40.77 E-value=23 Score=25.36 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHc
Q 009801 441 GKAFLLYSRMAEL 453 (525)
Q Consensus 441 ~~A~~~~~~a~~~ 453 (525)
..|+....+|++.
T Consensus 14 ~~A~~lv~~Ave~ 26 (86)
T 4a5x_A 14 TAAATVLKRAVEL 26 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566677777665
No 274
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=40.46 E-value=1e+02 Score=29.29 Aligned_cols=59 Identities=7% Similarity=-0.119 Sum_probs=48.0
Q ss_pred HHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Q 009801 130 LGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (525)
Q Consensus 130 lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~ 192 (525)
++..+.. .+++.+|+..++.++.. -+..++..|-.++...|+..+|+..|+++...-..
T Consensus 177 ~~~~~l~----~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 177 KAEAEIA----CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4455555 78999999999987654 47889999999999999999999999998765433
No 275
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=38.10 E-value=26 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
...+|.-+...|+|+.|+.+|+.++++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 346788899999999999999998875
No 276
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.54 E-value=35 Score=25.91 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHc
Q 009801 438 GDVGKAFLLYSRMAEL 453 (525)
Q Consensus 438 g~~~~A~~~~~~a~~~ 453 (525)
..+++|+.+..+|+..
T Consensus 17 ~~h~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3567888888888866
No 277
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.48 E-value=80 Score=35.10 Aligned_cols=64 Identities=11% Similarity=0.000 Sum_probs=46.7
Q ss_pred cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-------------------------CCHHHHHHHHHHHhcccc
Q 009801 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------------------------GNIQSKMAVAYTYLRQDM 175 (525)
Q Consensus 121 ~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------------------------~~~~a~~~la~~y~~~~~ 175 (525)
+.++...|.+|.+|.. .+++++|..+|++|+.. +....++.+..++...+-
T Consensus 839 ~~~~~~~yl~g~~~L~----~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~ 914 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLK----SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA 914 (1139)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSC
T ss_pred cCCcHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCC
Confidence 4677788999999998 99999999999998631 112344555666666777
Q ss_pred HHHHHHHHHHHHH
Q 009801 176 HDKAVKLYAELAE 188 (525)
Q Consensus 176 ~~~A~~~y~~~~~ 188 (525)
++-+++.-+.+++
T Consensus 915 ~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 915 YIDALEFSLLADA 927 (1139)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666654
No 278
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=27.60 E-value=1.4e+02 Score=26.54 Aligned_cols=50 Identities=16% Similarity=0.065 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 405 KKNLHMATALYKLVAERGPWSSLS--RWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~~~a~~--~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
.++.++|++..+..++..|.++-. .+-.+++..|+++.|..-++.+++++
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 678888899888888888766554 45556888899999998888888774
No 279
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=27.54 E-value=2e+02 Score=26.83 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
..|.++-+||.+-... -. .....++.+|.+|+.. .+..-+..+|..+.+ .+++.+|++.+-.|..
T Consensus 253 rYPmALgnLgDLEe~~--pt-~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR----~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 253 TYPMAIANLGDLEEIS--PT-PGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYR----KKKYYEAIASWVDAGY 324 (472)
T ss_dssp TCHHHHHHHHHHHHHS--CC-TTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcC--CC-CCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhh----cchHHHHHHHHHHHHH
Confidence 4688888888876533 11 2233377888887753 345666777777777 8889999988888754
No 280
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=26.60 E-value=1.2e+02 Score=33.70 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=65.4
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------------------------CCHHHHHHHHHHHHcCCCC
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-------------------------GHQKAFYQLAKMFHTGVGL 404 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------------------------~~~~a~~~l~~~y~~g~g~ 404 (525)
.++...|.+|.++.. .+++++|..+|++++.. +.+.-+.++..+++.
T Consensus 840 ~~~~~~yl~g~~~L~----~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~---- 911 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLK----SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE---- 911 (1139)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH----
T ss_pred CCcHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH----
Confidence 456667899999999 99999999999887521 112345566677776
Q ss_pred cCCHHHHHHHHHHHHHcC---ChH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERG---PWS----SLSRWALESYLKGDVGKAFLLYSR 449 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~---~~~----a~~~l~~~~~~~g~~~~A~~~~~~ 449 (525)
.+.++.+++.-+.|++.. +.+ -+.++=......|+|++|...+..
T Consensus 912 ~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 912 ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 788899999999998764 221 233444456677888888777643
No 281
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=25.88 E-value=30 Score=24.91 Aligned_cols=15 Identities=20% Similarity=0.022 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHc
Q 009801 439 DVGKAFLLYSRMAEL 453 (525)
Q Consensus 439 ~~~~A~~~~~~a~~~ 453 (525)
.+++|+.++.+++..
T Consensus 12 ~h~~AF~~Is~aL~~ 26 (89)
T 3eab_A 12 FHKQAFEYISIALRI 26 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 467777777777655
No 282
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=25.83 E-value=1.5e+02 Score=27.64 Aligned_cols=64 Identities=22% Similarity=0.156 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-------CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~ 384 (525)
.|.++.+||.+-...- .. ....++.+|.+|+.. .+..-+..+|-.+.+ .+++.+|++.+-.|.+
T Consensus 254 YPmALgnLgDLEe~~p--t~-gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR----~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISP--TP-GRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYR----KKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSC--CT-TSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCC--CC-CCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhh----cchHHHHHHHHHHHHH
Confidence 5777777887765311 12 222366777777643 456677778888888 8889999888877764
No 283
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=25.09 E-value=2.1e+02 Score=21.16 Aligned_cols=52 Identities=4% Similarity=-0.107 Sum_probs=33.5
Q ss_pred ccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHH
Q 009801 333 KKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAF 391 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 391 (525)
+|+|++|..+.+... .|+.-..++.+-.+ .+-.+++..++.+....|++...
T Consensus 52 rG~Yq~Al~l~~~~c---~pdlepw~ALce~r----lGl~s~le~rL~~la~sg~p~~q 103 (115)
T 2uwj_G 52 QGRYQEALAFAHGNP---WPALEPWFALCEWH----LGLGAALDRRLAGLGGSSDPALA 103 (115)
T ss_dssp TTCHHHHHGGGTTCC---CGGGHHHHHHHHHH----TTCHHHHHHHHHHHHTCSSHHHH
T ss_pred chhHHHHHHhcCCCC---CchHHHHHHHHHHh----cccHHHHHHHHHHHHhCCCHHHH
Confidence 457777776655443 55555666666666 67777777777666666666543
No 284
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.99 E-value=67 Score=24.39 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHHH
Q 009801 438 GDVGKAFLLYSRMAE 452 (525)
Q Consensus 438 g~~~~A~~~~~~a~~ 452 (525)
|+.++|+.+|++.+.
T Consensus 36 g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 36 GQKEEAKNYYKQGIG 50 (116)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 566666666655543
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.68 E-value=2.9e+02 Score=22.70 Aligned_cols=149 Identities=15% Similarity=-0.026 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 009801 301 KALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFL 380 (525)
Q Consensus 301 ~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~ 380 (525)
.++..+.+.+..+++.........+.. .++ ..++..+.+.+...++.........+.. .++ .+++..+.
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~-----~~~-~~~~~~L~~~l~~~~~~vr~~a~~aL~~----~~~-~~~~~~L~ 118 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQ-----IGD-ERAVEPLIKALKDEDGWVRQSAAVALGQ----IGD-ERAVEPLI 118 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHH-----HCC-GGGHHHHHHHTTCSSHHHHHHHHHHHHH----HCC-GGGHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHh-----hCC-HHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCc-HHHHHHHH
Confidence 345555555555554433333333221 101 2445555566655555444433333333 222 23555555
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHH
Q 009801 381 VAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQS 460 (525)
Q Consensus 381 ~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~ 460 (525)
+.+...++.........+.. .++ .+++..+...++-.++.........+...++ .+++..+.+.+...++....
T Consensus 119 ~~l~d~~~~vr~~a~~aL~~----~~~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~~~~vr~ 192 (211)
T 3ltm_A 119 KALKDEDWFVRIAAAFALGE----IGD-ERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAETGTGFARK 192 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHH----HCC-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHCCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH----cCC-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhCCCHHHHH
Confidence 55555555444433333332 121 3455556555544444433344444444444 56677777776665555444
Q ss_pred HHHHHH
Q 009801 461 NAAWIL 466 (525)
Q Consensus 461 ~la~~~ 466 (525)
.....+
T Consensus 193 ~A~~aL 198 (211)
T 3ltm_A 193 VAVNYL 198 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 286
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=24.53 E-value=2.2e+02 Score=21.12 Aligned_cols=52 Identities=13% Similarity=-0.038 Sum_probs=32.8
Q ss_pred ccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHH
Q 009801 333 KKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAF 391 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 391 (525)
+|+|++|..+.+... .|+.--.++.+-.+ .+-.+++..++.+....|++...
T Consensus 53 rG~Yq~Al~l~~~~c---~pdlepw~ALce~r----lGl~s~le~rL~~la~sg~p~~q 104 (116)
T 2p58_C 53 RGDYASALQQGNKLA---YPDLEPWLALCEYR----LGLGSALESRLNRLARSQDPRIQ 104 (116)
T ss_dssp TTCHHHHHHHHTTSC---CGGGHHHHHHHHHH----HTCHHHHHHHHHHHTTCCCHHHH
T ss_pred chhHHHHHHhcCCCC---CchHHHHHHHHHHh----cccHHHHHHHHHHHHhCCCHHHH
Confidence 457777777665544 55555555666556 66777777777666666665543
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.94 E-value=68 Score=31.79 Aligned_cols=57 Identities=16% Similarity=0.011 Sum_probs=44.6
Q ss_pred hhhHhhhccCCcHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc
Q 009801 215 NKGALRKSRGEDDEAFQILEYQAQKG-------NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (525)
Q Consensus 215 ~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (525)
.+-..|...+.++.|..+..+..-|. ....+|.+|.++.-. .+|.+|.+++..|+..
T Consensus 236 llLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q-----~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 236 LILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQ-----LDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTSS
T ss_pred HHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHh
Confidence 44555778889999999999875442 156678899999777 4999999999999864
No 288
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.08 E-value=2.5e+02 Score=26.72 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
..|.++-+||.+-... -.++ -..++.+|.+|+.. .+..-+..+|..+.+ .+++.+|+..+-.|..
T Consensus 275 rYPmALgnLgDLEe~~--pt~g-r~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR----~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 275 RYPMALGNLADLEELE--PTPG-RPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR----NRNVREALQAWADTAT 346 (550)
T ss_dssp TCHHHHHHHHHHHHHS--CCTT-CCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHhhcC--CCCC-CCCHHHHHHHHHHHHHHHhccCCccceeecchhhhh----cchHHHHHHHHHHHHH
Confidence 4699999999987544 1222 23478888888753 455677778888888 8999999999988764
No 289
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=22.66 E-value=1.6e+02 Score=23.23 Aligned_cols=47 Identities=13% Similarity=0.003 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Q 009801 140 RERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (525)
Q Consensus 140 ~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~ 192 (525)
..+|.+++..|+++|.. -+..|...+..|+++.|.-..+++++...+
T Consensus 2 ~~~~~ee~~~wl~~A~~------dl~~A~~~~~~g~y~~a~F~aqQA~Ek~lK 48 (141)
T 3o10_A 2 SVGNPVEARRWLRQARA------NFSAARNDLHKNANEWVCFKCYLSTKLALI 48 (141)
T ss_dssp CCCCHHHHHHHHHHHHH------HHHHHGGGTTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHh------hhhHHhhHHhhCccceEeeehhHHHHHHHH
Confidence 35688999999999854 244455666678888888888888776443
No 290
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=22.12 E-value=1.3e+02 Score=23.70 Aligned_cols=44 Identities=11% Similarity=-0.062 Sum_probs=29.8
Q ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 368 VKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 368 ~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
+.++.+++..|+++|.+ ....+..... .++++.|.-..++|++.
T Consensus 2 ~~~~~ee~~~wl~~A~~------dl~~A~~~~~----~g~y~~a~F~aqQA~Ek 45 (141)
T 3o10_A 2 SVGNPVEARRWLRQARA------NFSAARNDLH----KNANEWVCFKCYLSTKL 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHH------HHHHHGGGTT----TTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHh------hhhHHhhHHh----hCccceEeeehhHHHHH
Confidence 35678888888887654 2333444443 67788888888888776
No 291
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.05 E-value=1.5e+02 Score=21.45 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=22.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Q 009801 162 SKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (525)
Q Consensus 162 a~~~la~~y~~~~~~~~A~~~y~~~~~~ 189 (525)
.+-..+..++..++|++||+..++++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3456677888899999999999998764
Done!