BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009802
(525 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/526 (84%), Positives = 484/526 (92%), Gaps = 2/526 (0%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
ML FMVG KQAFEVSLADVSQT LQGKNDVILEFHVDDTTGANEKDSLME+SFHIP+SNT
Sbjct: 118 MLAFMVGSKQAFEVSLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNT 177
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
QFVGDEN P AQVFRDKIMSMADVG GGE+AVVTF+GIAILTPRGRYSVELHLSFLRLQG
Sbjct: 178 QFVGDENRPSAQVFRDKIMSMADVGVGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQG 237
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
QANDFKIQYSSVVRLFLLPKSNQPHTFV+++LDPPIRKGQTLYPHIV+QFETD VV SEL
Sbjct: 238 QANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDTVVDSEL 297
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
+SE+L N+KYKDKLE SYKGLIHEVFTT+LRGLSG K+TKPG FRS QDGYAVKSSLKA
Sbjct: 298 AISEDLYNSKYKDKLELSYKGLIHEVFTTVLRGLSGGKVTKPGNFRSCQDGYAVKSSLKA 357
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR 300
EDG+LYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLK+EQEHLFR
Sbjct: 358 EDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFR 417
Query: 301 NIQRNEYHNLFDFISGKGLKIMNLGD-MKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGD 359
NIQRNEYHNL+ FIS KGLKIMN+ D + GVA VL+ DDDDAVDPHLERI+NEAGGD
Sbjct: 418 NIQRNEYHNLYGFISSKGLKIMNIADAQQAVGGVAKVLENDDDDAVDPHLERIRNEAGGD 477
Query: 360 ESDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEKPAKKESKKESSSVKASTSKKK 419
ESDEEDSDFV DKDDGGSPTDDSG + SDAS+SGGE EKPAKKE KK+ SS +S+ KK
Sbjct: 478 ESDEEDSDFVIDKDDGGSPTDDSGADVSDASQSGGETEKPAKKEPKKDLSSKASSSKKKS 537
Query: 420 SRDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERW 479
D DG KKKQKKKKDPNAPKRA+SGF+FFSQMEREN+KK+NPGI+FTDVGRVLGE+W
Sbjct: 538 KDA-DVDGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKW 596
Query: 480 KKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESDSA 525
K +S EE+EPYE+KA+ADKKRYKDEISGYKNP+PM++DSGNESDSA
Sbjct: 597 KNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQPMNVDSGNESDSA 642
>sp|Q39601|SSRP1_CATRO FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2
SV=1
Length = 639
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/525 (81%), Positives = 466/525 (88%), Gaps = 3/525 (0%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
MLTF+VG KQAFEVSLADV+QTQLQGKNDV+LEF K+SLMEISFH+PNSNT
Sbjct: 118 MLTFLVGSKQAFEVSLADVAQTQLQGKNDVMLEFMWMILLEQMRKNSLMEISFHVPNSNT 177
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
QFVGDEN PPAQVFRDKIMSMADVGAGGE+AVVTFEGIAILTPRGRY+VELHLSFLRLQG
Sbjct: 178 QFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYNVELHLSFLRLQG 237
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVV S L
Sbjct: 238 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVDSSL 297
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
+SE+LL+TKYKDKLEP+YKGLIHEVFT ILRGLSGAK+T+PGKFRS QDGYAVKSSLKA
Sbjct: 298 SISEDLLSTKYKDKLEPTYKGLIHEVFTMILRGLSGAKVTRPGKFRSCQDGYAVKSSLKA 357
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR 300
EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR
Sbjct: 358 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR 417
Query: 301 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDE 360
NIQRNEYHNLFDFIS KGLKIMNLG K D + AVLQEDDDDAVDPHLERIKNEAGGDE
Sbjct: 418 NIQRNEYHNLFDFISSKGLKIMNLGADKAADAITAVLQEDDDDAVDPHLERIKNEAGGDE 477
Query: 361 SDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEKPAKKESKKESSSVKASTSKKKS 420
SDEED DFVAD DD GSPTDDSGE +SD S+SG E E P KK+ KKE+S+ K S+KK
Sbjct: 478 SDEEDEDFVADIDDEGSPTDDSGEGESDGSDSGNE-EIPTKKKPKKEASAPKVPLSRKKV 536
Query: 421 RDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWK 480
D D++ KKKKQKKKKDPNAPK ++S F+FFSQ EREN+KK NPGIAFTDVG+VLG+R
Sbjct: 537 GD-DDNMKKKKQKKKKDPNAPK-SISAFMFFSQTERENVKKDNPGIAFTDVGKVLGDRCN 594
Query: 481 KMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESDSA 525
K + ++ + + ADKKRY DEIS YKNP+PM++DSGN+SDSA
Sbjct: 595 KCQLRKKHLLKQRLVADKKRYTDEISNYKNPQPMNVDSGNDSDSA 639
>sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1
SV=2
Length = 646
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/527 (78%), Positives = 468/527 (88%), Gaps = 4/527 (0%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQ 61
LTF+VG KQAFEVSLADVSQTQLQGKNDV LEFHVDDT GANEKDSLMEISFHIPNSNTQ
Sbjct: 119 LTFLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQ 178
Query: 62 FVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQ 121
FVGDEN PP+QVF D I++MADV G E+AVVTFE IAILTPRGRY+VELHLSFLRLQGQ
Sbjct: 179 FVGDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQ 238
Query: 122 ANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELL 181
ANDFKIQYSSVVRLFLLPKSNQPHTFVV++LDPPIRKGQT+YPHIV+QFETD VV+SEL
Sbjct: 239 ANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELS 298
Query: 182 MSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAE 241
+S+EL+NTK+KDKLE SYKGLIHEVFTT+LR LSGAKITKPGKFRS+QDG+AVKSSLKAE
Sbjct: 299 ISDELMNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAE 358
Query: 242 DGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRN 301
DGVLYPLEK FFFLPKPPTLILH+EIDYVEFERHAAGG+NMHYFDLLIRLKT+ EHLFRN
Sbjct: 359 DGVLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRN 418
Query: 302 IQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVL-QEDDDDAVDPHLERIKNEAGGDE 360
IQRNEYHNL+ FIS KGLKIMNLG T DGVAAVL DDDDAVDPHL RI+N+A +
Sbjct: 419 IQRNEYHNLYTFISSKGLKIMNLGGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAADES 478
Query: 361 SDEEDSDFVADKDDGGSPTDDSGEEDSDASESG-GE-KEKPAKKESKKESSSVKASTSKK 418
+E++ + + DDGGSPTDDSG +DSDASE G GE KEK KKE KKE+SS K K+
Sbjct: 479 DEEDEDFVMGEDDDGGSPTDDSGGDDSDASEGGVGEIKEKSIKKEPKKEASSSKGLPPKR 538
Query: 419 KSRDGDE-DGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGE 477
K+ DE K+KK KKKKDPNAPKRAMSGF+FFSQMER+NIKK +PGIAF +VG+VLG+
Sbjct: 539 KTVAADEGSSKRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGD 598
Query: 478 RWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESDS 524
+W++MS +++EPYE+KA+ DK+RYKDEIS YKNP+PM++DSGN+SDS
Sbjct: 599 KWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPMNVDSGNDSDS 645
>sp|Q9LGR0|SSP1A_ORYSJ FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica
GN=SSRP1-A PE=2 SV=1
Length = 641
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/529 (72%), Positives = 445/529 (84%), Gaps = 11/529 (2%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
MLTFMVG KQAFEVSLADVSQTQ+QGK DV+LEFHVDDTTG NEKDSLM++SFH+P SNT
Sbjct: 118 MLTFMVGSKQAFEVSLADVSQTQMQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVPTSNT 177
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
QF+GDEN AQV + IM +ADV + EEAVVTFEGIAILTPRGRYSVELHLSFLRLQG
Sbjct: 178 QFLGDENRTAAQVLWETIMGVADVDSS-EEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 236
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
QANDFKIQYSS+VRLFLLPKSN PHTFVVVTLDPPIRKGQTLYPHIV+QFET+ VV+ L
Sbjct: 237 QANDFKIQYSSIVRLFLLPKSNNPHTFVVVTLDPPIRKGQTLYPHIVIQFETEAVVERNL 296
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
+++E+L KYKD+LE SYKGLIHEVFT +LRGLSGAK+T+PG FRS QDGYAVKSSLKA
Sbjct: 297 ALTKEVLAEKYKDRLEESYKGLIHEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSSLKA 356
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNM--HYFDLLIRLKTEQEHL 298
EDG+LYPLEK FFFLPKPPTLILHEEI++VEFERH AGG+++ HYFDLL++LK +QEHL
Sbjct: 357 EDGLLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGGASISSHYFDLLVKLKNDQEHL 416
Query: 299 FRNIQRNEYHNLFDFISGKGLKIMNLGDMK-TTDGVAAVLQEDDDDAVDPHLERIKNEAG 357
FRNIQR+EYHNLF+FI+GK LKIMNLGD + T GV AVL++ DDDAVDPHLERIKN+AG
Sbjct: 417 FRNIQRSEYHNLFNFINGKHLKIMNLGDGQGATGGVTAVLRDTDDDAVDPHLERIKNQAG 476
Query: 358 GDESDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEKPAKKESKKESSSVKASTSK 417
+ESDEED DFVADKDD GSPTDDSG EDSDASESGGEKEK +KKE+ VK K
Sbjct: 477 DEESDEEDEDFVADKDDSGSPTDDSGGEDSDASESGGEKEKLSKKEASSSKPPVK---RK 533
Query: 418 KKSRDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGE 477
K RD +E K+K KKKKDPNAPKRAM+ F++FS ER N+K +NP + T++ + LGE
Sbjct: 534 PKGRD-EEGSDKRKPKKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGE 592
Query: 478 RWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDS---GNESD 523
W+KM+ EE++PY +++ DKKRY+ E + Y+ MD+DS GNESD
Sbjct: 593 MWQKMTGEEKQPYIQQSQVDKKRYEKESAVYRGAAAMDVDSGSGGNESD 641
>sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1
Length = 639
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/527 (72%), Positives = 445/527 (84%), Gaps = 9/527 (1%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
MLTFMVG KQAFEVSL DV+QTQ+QGK DV+LE HVDDTTGANEKDSLM++SFH+P SNT
Sbjct: 118 MLTFMVGSKQAFEVSLPDVAQTQMQGKTDVLLELHVDDTTGANEKDSLMDLSFHVPTSNT 177
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
QFVGDE+ PPA + + I+ ADVG+ EE VVTFEGIAILTPRGRYSVELHLSFLRLQG
Sbjct: 178 QFVGDESRPPAHILWETILKFADVGSS-EEPVVTFEGIAILTPRGRYSVELHLSFLRLQG 236
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
QANDFKIQYSS+VRLFLLPKSN PHTFVV+TLDPPIRKGQTLYPHIV+QFET+ VV+ +L
Sbjct: 237 QANDFKIQYSSIVRLFLLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVERDL 296
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
+S+ELL KYKD+LE SYKGLIHEVFT +LRGLSGAK+T+PG FRS QDGYAVKSSLKA
Sbjct: 297 ALSKELLVEKYKDRLEESYKGLIHEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSSLKA 356
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNM--HYFDLLIRLKTEQEHL 298
EDG+LYPLEK FFFLPKPPTLILHEEI++VEFERH AGG+++ HYFDLL++LK +QEHL
Sbjct: 357 EDGLLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGGASISSHYFDLLVKLKNDQEHL 416
Query: 299 FRNIQRNEYHNLFDFISGKGLKIMNL-GDMKTTDGVAA-VLQEDDDDAVDPHLERIKNEA 356
FRNIQRNEYHNLF+FI+GK +KIMNL GD + GV VL++ DDDAVDPHLERIKN+A
Sbjct: 417 FRNIQRNEYHNLFNFINGKNIKIMNLGGDGQGASGVVTDVLRDTDDDAVDPHLERIKNQA 476
Query: 357 GGDESDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEKPAKKESKKESSSVKASTS 416
G +ESDEED DFVADKDD GSPTDDSG+E+SDAS+SGGEKEK +KKE+ K
Sbjct: 477 GDEESDEEDEDFVADKDDSGSPTDDSGDEESDASDSGGEKEKSSKKEASSSKPVQK---R 533
Query: 417 KKKSRDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLG 476
K K+RD DE +KKK KKKKDPNAPKRAM+ F++FS ER N+K SNP + T++ + LG
Sbjct: 534 KHKARD-DEGQEKKKPKKKKDPNAPKRAMTPFMYFSMAERGNMKSSNPDLPTTEIAKKLG 592
Query: 477 ERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESD 523
E W+KMS EE++PY +A+ DKKRY+ E + Y+ +D+DSGNESD
Sbjct: 593 EMWQKMSGEEKQPYIQQAQVDKKRYEKESAVYRGEATVDVDSGNESD 639
>sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica
GN=SSRP1-B PE=2 SV=1
Length = 640
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/528 (70%), Positives = 444/528 (84%), Gaps = 10/528 (1%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
ML+F VG K+AFEVSLADV+QTQ+QGK DV+LEFHVDDTTG NEKDSLM++SFH+P SNT
Sbjct: 118 MLSFNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNT 177
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
QF GDEN P AQV I++ ADVG+ EEAVVTF+GIAILTPRGRYSVELHLSFLRLQG
Sbjct: 178 QFPGDENRPSAQVLWQAILNKADVGSS-EEAVVTFDGIAILTPRGRYSVELHLSFLRLQG 236
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
QANDFKIQYSS++RLF+LPKSN PHTFVV+TLDPPIRKGQTLYPHIV+QFET+ VVQ +L
Sbjct: 237 QANDFKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDL 296
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
+S+E+L KYKD+LE SY+GLIHEVF+ +LRGLSGAK+T+P FRS QDGYAVKSSLKA
Sbjct: 297 TLSDEVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKA 356
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNM--HYFDLLIRLKTEQEHL 298
EDG+LYPLEK FFFLPKPPTLILHEEI+YVEFERH AGG+++ HYFDLL++LK +QEHL
Sbjct: 357 EDGLLYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHL 416
Query: 299 FRNIQRNEYHNLFDFISGKGLKIMNLGDMK-TTDGVAAVLQEDDDDAVDPHLERIKNEAG 357
FRNIQRNEYHNLF+FISGK LKI+NLG+ + GV AVLQ DDDAVDPHLERI+N+ G
Sbjct: 417 FRNIQRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRNQTG 476
Query: 358 GDESDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEKPAKKESKKESSSVKASTSK 417
DESDEED DFVADKDD GSPTDDSGEE SDAS SGGEKEK +KKE+ + +K K
Sbjct: 477 DDESDEEDEDFVADKDDSGSPTDDSGEEGSDASLSGGEKEKSSKKEASSSKAPLK----K 532
Query: 418 KKSRDGD--EDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVL 475
+K + GD E +K+K KKKKDPNAPKRA++ F++FS+ ER N+K SNP +A T++ + L
Sbjct: 533 RKPKGGDAAEGSEKRKPKKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKL 592
Query: 476 GERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESD 523
GERW+KM+ EE++PY +++ DKKRY +E + Y+ MD+DSG SD
Sbjct: 593 GERWQKMTAEEKQPYVEQSQVDKKRYAEESAAYRGAAAMDVDSGPASD 640
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 184/513 (35%), Positives = 278/513 (54%), Gaps = 23/513 (4%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
+L+F +G++ FE+ L++VSQ GKN+V LEFH +D SLME+ F++P +
Sbjct: 118 LLSFDIGEQPVFEIPLSNVSQCT-TGKNEVTLEFHQNDDAEV----SLMEVRFYVPPTQE 172
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
V P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G
Sbjct: 173 DGVD-----PVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHG 227
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
+ D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L
Sbjct: 228 KTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTL 287
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
M+EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA
Sbjct: 288 NMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKA 347
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR 300
G+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F
Sbjct: 348 SSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFS 404
Query: 301 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDE 360
+I+R EY LFDF++ K L I N G + + D+D D +LER+K E E
Sbjct: 405 SIEREEYGKLFDFVNAKKLNIKNRGLKEGMKQSYDEYADSDEDQHDAYLERMKEEGKIRE 464
Query: 361 SDEEDSDFVADKDDGGSPTDDS---GEEDSDASESGGEKEKPAKKESKKESSSVKASTSK 417
+ DS D G TD+S GEED D +E + +S + +K
Sbjct: 465 ENANDSS-----DGSGEETDESFNPGEEDDDVAEEFDSNASASSSSGDGDSDRGEKKPAK 519
Query: 418 KKSRDGDEDGKKKK--QKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVL 475
K D +KK+ KK KDPNAPKR MS ++ + RE IK +PGI+ TD+ +
Sbjct: 520 KAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGISITDLSKKA 579
Query: 476 GERWKKMSVEEREPYESKARADKKRYKDEISGY 508
GE WK MS E++E ++ KA K+ Y+ + Y
Sbjct: 580 GELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEY 612
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 308 bits (790), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 187/520 (35%), Positives = 282/520 (54%), Gaps = 35/520 (6%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
+L+F +G + FE+ L++VSQ GKN+V LEFH +D SLME+ F++P +
Sbjct: 118 LLSFDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQNDDAEV----SLMEVRFYVPPTQE 172
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
V P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G
Sbjct: 173 DGVD-----PVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHG 227
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
+ D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L
Sbjct: 228 KTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTL 287
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
M+EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA
Sbjct: 288 NMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKA 347
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR 300
G+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F
Sbjct: 348 SSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFS 404
Query: 301 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDE 360
+I+R EY LFDF++ K L I N G + + + D+D D +LER+K E E
Sbjct: 405 SIEREEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHDAYLERMKEEGKIRE 464
Query: 361 SDEEDSDFVADKDDGGSPTDDSGEE-----------DSDASESGGEKEKPAKKESKKESS 409
+ DS DD G TD+S DS+AS S E + +E KK
Sbjct: 465 ENANDSS-----DDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDREEKKREQ 519
Query: 410 SVKASTSK-KKSRDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAF 468
+A +K +KSR K + KK KDPNAPKR MS ++ + RE IK +PGI+
Sbjct: 520 LKRAKMAKDRKSRR-----KSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISI 574
Query: 469 TDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGY 508
TD+ + GE WK MS E++E ++ KA ++ Y+ + Y
Sbjct: 575 TDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
Length = 709
Score = 301 bits (772), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 181/523 (34%), Positives = 283/523 (54%), Gaps = 39/523 (7%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
+L+F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P +
Sbjct: 118 LLSFDIGDQPVFEIPLSNVSQCT-TGKNEVTLEFHQND----DAEVSLMEVRFYVPPTQE 172
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
V P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G
Sbjct: 173 DGVD-----PVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHG 227
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
+ D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L
Sbjct: 228 KTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTL 287
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
M+EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA
Sbjct: 288 NMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKA 347
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR 300
G+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F
Sbjct: 348 SSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFS 404
Query: 301 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDE 360
+I+R EY LFDF++ K L I N G + + + D+D D +LER+K E E
Sbjct: 405 SIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIRE 464
Query: 361 SDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEKPAKK--------------ESKK 406
+ DS +DDSGEE ++ G E+E A++ +S +
Sbjct: 465 ENANDS------------SDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDR 512
Query: 407 ESSSVKASTSKKKSRDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGI 466
+ K K ++D K + KK KDPNAPKR MS ++ + RE IK +PGI
Sbjct: 513 DEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
Query: 467 AFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 509
+ TD+ + GE WK MS E++E ++ KA ++ Y+ + Y+
Sbjct: 573 SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYE 615
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 301 bits (771), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 185/524 (35%), Positives = 282/524 (53%), Gaps = 35/524 (6%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
+L+F +G + AFE+ L++VSQ GKN+V LEFH +D + SLMEI F++P +
Sbjct: 118 LLSFDIGDQPAFELPLSNVSQCT-TGKNEVTLEFHQNDDSEV----SLMEIRFYVPPTQ- 171
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
D+ + F ++S ADV +AV F + LTPRGRY + ++ +FL L G
Sbjct: 172 ----DDGGDSVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHG 227
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
+ D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L
Sbjct: 228 KTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTL 287
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
MSEE + +++ KL+ S G ++E+ + +++ L KIT PG F + S KA
Sbjct: 288 NMSEEEVERRFEGKLKKSMSGCLYEMVSRVMKALVNRKITVPGNFLGHSGSQCITCSYKA 347
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR 300
G+LYPLE+ F ++ KPP I +EI V F R G + FD I K ++ F
Sbjct: 348 SSGLLYPLERGFIYVHKPPVHIRFDEITCVNFAR---GTTTTRSFDFEIETKQGSQYTFS 404
Query: 301 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDE 360
+I+R EY LFDF++ K L I N G + + D+D D +LER+K E E
Sbjct: 405 SIEREEYGKLFDFVNAKKLSIKNRGLKEGMKPAYDDYADSDEDQHDAYLERMKEEGKIRE 464
Query: 361 SDEEDSDFVADKDDGGSPTDDS---------GEEDSDASESGGEKEKPAKKESKKESSSV 411
+ AD D+ G TD+S E+ D++ S + ++ K+ +
Sbjct: 465 N--------ADSDESGDETDESFNPGEEEEEVAEEFDSNPSASSSSADSDDDTDKKKDAK 516
Query: 412 KASTSKKKSRDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDV 471
+A K+K + KK + KK KDP APKR MS ++ + RE IK NPGI+ TD+
Sbjct: 517 RAKIVKQK-----KPRKKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPGISITDL 571
Query: 472 GRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMD 515
+ GE WK MS +++E ++ +A K+ Y+ + Y P +
Sbjct: 572 SKKAGEIWKNMSRDKKEEWDRRAEEAKRDYEKAMKEYNTSAPTE 615
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 301 bits (771), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 187/521 (35%), Positives = 283/521 (54%), Gaps = 35/521 (6%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
+L+F +G + FE+ L++VSQ GKN+V LEFH +D SLME+ F++P +
Sbjct: 118 LLSFDIGDQPVFEIPLSNVSQCT-TGKNEVTLEFHQNDDAEV----SLMEVRFYVPPTQE 172
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
V P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G
Sbjct: 173 DGVD-----PVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHG 227
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
+ D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L
Sbjct: 228 KTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTL 287
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
M+EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA
Sbjct: 288 NMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKA 347
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR 300
G+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F
Sbjct: 348 SSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFS 404
Query: 301 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDE 360
+I+R EY LFDF++ K L I N G + + + D+D D +LER+K E E
Sbjct: 405 SIEREEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHDAYLERMKEEGKIRE 464
Query: 361 SDEEDSDFVADKDDGGSPTDDSGEE-----------DSDASESGGEKEKPAKKESKKESS 409
+ DS DD G TD+S DS+AS S E + +E KK
Sbjct: 465 ENANDS-----SDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDREEKKRKQ 519
Query: 410 SVKASTSK-KKSRDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAF 468
+A +K +KSR K + KK KDPNAPKR MS ++ + RE IK +PGI+
Sbjct: 520 LKRAKMAKDRKSRK-----KSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISI 574
Query: 469 TDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 509
TD+ + GE WK MS E++E ++ KA ++ Y+ + Y+
Sbjct: 575 TDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYE 615
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 175/519 (33%), Positives = 278/519 (53%), Gaps = 27/519 (5%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQ 61
+ F VGQK +FE+ L +VSQ Q K++V +EFH +D + SLME+ F IP S
Sbjct: 122 MMFQVGQKLSFEIPLNNVSQC-TQNKDEVTMEFHQNDDSEL----SLMEMRFFIPPSQ-- 174
Query: 62 FVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQ 121
DE + F D +M+ ADV A+ F+ + LTPRGRY + ++ F++L G+
Sbjct: 175 ---DEMIDKVKDFHDNVMAKADVLQVKGTAICVFQDLQCLTPRGRYDIRMYPKFIQLHGK 231
Query: 122 ANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELL 181
D+KI Y+S++RLFLLP +Q F VV+LDPP+++G T Y ++L F + + EL
Sbjct: 232 TFDYKITYTSILRLFLLPHKDQRQIFFVVSLDPPLKQGMTRYHFLILLFYKEDDLAVELS 291
Query: 182 MSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAE 241
+ ++ + ++ KL+ G ++EV + +++ L KIT PG F+ ++ + KA
Sbjct: 292 LPDDEIEERFGGKLQKDMSGPMYEVVSRVMKHLVQRKITVPGSFKGLNGVQSITCTYKAS 351
Query: 242 DGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMH-YFDLLIRLKTEQEHLFR 300
G L+PLE+ F ++ KPP I +EI YV F R G + ++ FD I +++ +F
Sbjct: 352 SGFLFPLERGFMYVHKPPVHIRFDEIAYVNFAR---GTTKINKSFDFEIETRSKNNFVFS 408
Query: 301 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDD---DAVDPHLERIKNEAG 357
NI+R++Y +L+DF+ K LKI N+G DG L D D D DP++ER+K EA
Sbjct: 409 NIERDQYASLYDFVHNKQLKIKNIG----KDGADFDLMVDSDEDADVHDPYMERMKQEAA 464
Query: 358 GDESDEEDSDFVADKDDGGSPTDDSGE------EDSDASESGGEKEKPAKKESKKESSSV 411
E +D D +DD P + E D ++ SG E+ E + E
Sbjct: 465 EREKQVDDDDDDESEDDDFQPETNVAEVEEEYNSDVGSASSGASDEEEEDGEEEVEEKPK 524
Query: 412 KASTSKKKSRDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDV 471
K K ++ K ++KKKDPNAPKR S + + R K N GI+ T++
Sbjct: 525 KRKKEKVMKERRQKETPGKVKRKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGISVTEL 584
Query: 472 GRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKN 510
++ G+ WKK+ +E++ +E + K ++ + YK+
Sbjct: 585 TKLAGKEWKKIDPDEKQKFERMYQKSKVKFDAAMKEYKS 623
>sp|Q4WGK6|POB3_ASPFU FACT complex subunit pob3 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pob3 PE=3
SV=2
Length = 573
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 162/457 (35%), Positives = 234/457 (51%), Gaps = 61/457 (13%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEK---------------- 45
L F V + AFE+ +++S T L GKN+V +EF + AN +
Sbjct: 117 LAFNVQNRPAFEIPYSEISNTNLAGKNEVAVEFALTSDGDANAQPSGSTKNRGRKAAAGP 176
Query: 46 DSLMEISFHIPNSNTQ---------------FVGDENHPPAQVFRDKIMSMADVGAGGEE 90
D L+E+ F+IP + + E A +F + +M A++G +
Sbjct: 177 DELVEMRFYIPGTAVKTEKGIKTENDENGEEEEEGEEQNAANLFYETLMEKAEIGDVAGD 236
Query: 91 AVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVV 150
TF + LTPRGR+ ++++ S RL+G+ D+KIQY+S+ + FLLPK+++ HT +V+
Sbjct: 237 TFATFLDVLHLTPRGRFDIDMYESSFRLRGKTYDYKIQYASIKKFFLLPKNDEMHTLIVL 296
Query: 151 TLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTI 210
LDPP+R+GQT YP +V+Q + D + EL M+EELL ++YKDKLEP Y+ IH+V T I
Sbjct: 297 GLDPPLRQGQTRYPFLVMQLKLDEEISLELNMTEELLESRYKDKLEPRYEEPIHQVVTKI 356
Query: 211 LRGLSGAKITKPGK-FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDY 269
RGLSG K+ P K F S VK S+KA +G+LY L+KS F+PKP T + E I
Sbjct: 357 FRGLSGKKVIMPSKDFVSHHGHSGVKCSIKANEGLLYFLDKSLIFVPKPATYVQIENIAV 416
Query: 270 VEFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMK 328
+ R S FD+ + LK EH F NI R E L +F K ++ N
Sbjct: 417 ITMSRVGGAVSASRTFDITVTLKAGMGEHQFSNINREEQQPLEEFFKAKNIRFKNEMSDD 476
Query: 329 TTDGVAAVLQEDDDDAVDPHLER----------------IKNEAGGDESDEEDSDFV--- 369
T+ +AA L DD + D R + E+ D ++E DS+
Sbjct: 477 TSALIAAALDNDDMMSSDEDGGRADRGSADEDEESVDEDFQAESESDVAEEFDSEHESSG 536
Query: 370 ----ADKDDGGSPTDDSGEEDSDASESGGEKEKPAKK 402
A+ DD DD EED D SE E+E+P KK
Sbjct: 537 SASDAEMDDASDAGDD--EEDVDMSE---EEERPKKK 568
>sp|Q293F6|SSRP1_DROPS FACT complex subunit Ssrp1 OS=Drosophila pseudoobscura
pseudoobscura GN=Ssrp PE=3 SV=2
Length = 727
Score = 242 bits (617), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 197/356 (55%), Gaps = 13/356 (3%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
+L+F K FEV L+ VSQ + GKN+V LE+H +D L+E+ FHIP
Sbjct: 118 VLSFDKDSKTIFEVPLSHVSQC-VTGKNEVTLEYHQNDDAPVG----LLEMRFHIPA--- 169
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
V + P + F +MS A V + E++ F I ILTPRGRY +++ +F +L G
Sbjct: 170 --VESADDDPVEKFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHG 227
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
+ D+KI SV+RLF+LP + F V++LDPPI++GQT Y ++VL F D EL
Sbjct: 228 KTFDYKIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIEL 287
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
SE L KY+ KLE G ++EV +++ L G KIT PG F AV S KA
Sbjct: 288 PFSEAELRDKYEGKLEKELSGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKA 347
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR 300
G LYPLE+ F ++ KPP I EEI V F R +GGS FD + LK H+F
Sbjct: 348 AAGYLYPLERGFIYIHKPPLHIRFEEISSVNFAR--SGGST-RSFDFEVTLKNGTVHIFS 404
Query: 301 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEA 356
+I++ EY LFDFI+ K L + N+G K+ D+++ D +L R+K EA
Sbjct: 405 SIEKEEYAKLFDFITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLKAEA 460
>sp|Q5AYE3|POB3_EMENI FACT complex subunit pob3 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pob3 PE=3
SV=2
Length = 575
Score = 241 bits (616), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 202/375 (53%), Gaps = 35/375 (9%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVD-DTTG--------------ANEKD 46
L F V + AFEV +++S T L GKN+V +E + D G A D
Sbjct: 114 LAFNVQNRPAFEVPYSEISNTNLAGKNEVAVELSLSVDPNGSKPAGSTKNRGRKAAAGPD 173
Query: 47 SLMEISFHIPNSNTQF---VGDEN---------------HPPAQVFRDKIMSMADVGAGG 88
L+E+ F+IP + + + EN A +F + +M A++G
Sbjct: 174 ELVEMRFYIPGTAVKTENGIKGENADEKNGGEGEENGEEQNAANLFYELLMEKAEIGDVA 233
Query: 89 EEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFV 148
+ TF + LTPRGR+ ++++ S RL+G+ D+KIQYSS+ + FLLPK++ HT +
Sbjct: 234 GDTFATFLDVLHLTPRGRFDIDMYESSFRLRGKTYDYKIQYSSIKKFFLLPKNDDTHTLI 293
Query: 149 VVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFT 208
V+ L+PP+R+GQT YP +V+Q + D + EL M+EELL T+YKDKLEP Y+ IH+V T
Sbjct: 294 VLGLEPPLRQGQTRYPFLVMQLKLDEEISLELNMTEELLETRYKDKLEPRYEEPIHQVIT 353
Query: 209 TILRGLSGAKITKPGK-FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEI 267
I RGLSG K+ P K F S VK S+KA +G+LY L+KS F+PKP T I E +
Sbjct: 354 KIFRGLSGKKVIMPSKDFVSHHGHSGVKCSIKANEGLLYFLDKSLIFVPKPATYIQMENV 413
Query: 268 DYVEFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGD 326
V R S FD+ + LK EH F NI R E L +F K ++I N
Sbjct: 414 AVVTMSRVGGAISASRTFDITVSLKAGMGEHQFSNINREEQQPLEEFFKAKNIRIKNEMS 473
Query: 327 MKTTDGVAAVLQEDD 341
T +AA L DD
Sbjct: 474 DDTNALIAAALDNDD 488
>sp|Q7RWW0|POB3_NEUCR FACT complex subunit pob-3 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=pob-3 PE=3 SV=1
Length = 565
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 232/423 (54%), Gaps = 38/423 (8%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANE--------------KDS 47
LTF V + AFE+ +++S T L G+N++ +EF +D +N KD
Sbjct: 117 LTFNVQNRPAFEIPYSEISNTNLAGRNEIAVEFAGNDGGKSNGHSGTGGKGKKASAGKDQ 176
Query: 48 LMEISFHIPNSNTQF----------VGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEG 97
L+E+ F+IP + T+ +E +F D ++ A++G + + TF
Sbjct: 177 LVEVRFYIPGTTTRKEAEGGEAGSDADEEEKNAVTLFYDTLIEKAEIGETAGDTIATFLD 236
Query: 98 IAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIR 157
+ LTPRGR+ ++++ + RL+G+ D+KIQY ++ + +LPK + H + + LDPP+R
Sbjct: 237 VLHLTPRGRFDIDMYDASFRLRGKTYDYKIQYDAIKKFMVLPKPDDLHFLLCIGLDPPLR 296
Query: 158 KGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGA 217
+GQT YP +V+QF+ D V +L ++EE LN KYKDKL+ Y+ +H+V I +GL+
Sbjct: 297 QGQTRYPFVVMQFKADEEVTLDLNITEEELNGKYKDKLQSHYEQPLHQVVAYIFKGLANK 356
Query: 218 KITKPGK-FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHA 276
K+T P K F + + Y +K S+KA +G LY LEK+F F+PKP T I +E+ + F R
Sbjct: 357 KVTTPAKDFTTHRQQYGIKCSIKASEGFLYCLEKAFMFVPKPATYISYEQTQSITFSRVG 416
Query: 277 AGGSNMHYFDLLIRLKT-EQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAA 335
S + FD+ + +K F NI R + L +F KGL++ N D T+ +AA
Sbjct: 417 GAVSALSTFDITVHMKNGAGSSQFSNINREDLKALEEFFKLKGLRVKNEID-DDTNLIAA 475
Query: 336 VLQED-----DDDAVDPHLERIKNEAGGDESD-----EEDSDFVADKDDGGSPTDDSGEE 385
L +D D++AV P +R + + D E +SD VA++ D +D SG E
Sbjct: 476 ALGDDDMASSDEEAVGPKADRGSADEDEESVDEDFQAESESD-VAEEYDSNHESDGSGSE 534
Query: 386 DSD 388
+SD
Sbjct: 535 ESD 537
>sp|Q05344|SSRP1_DROME FACT complex subunit Ssrp1 OS=Drosophila melanogaster GN=Ssrp PE=1
SV=2
Length = 723
Score = 235 bits (600), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 193/353 (54%), Gaps = 13/353 (3%)
Query: 1 MLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT 60
+L+F K FEV L+ VSQ + GKN+V LEFH +D L+E+ FHIP
Sbjct: 118 VLSFDKESKTIFEVPLSHVSQC-VTGKNEVTLEFHQNDDAPVG----LLEMRFHIPA--- 169
Query: 61 QFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQG 120
V P F +MS A V + E++ F I ILTPRGRY +++ +F +L G
Sbjct: 170 --VESAEEDPVDKFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHG 227
Query: 121 QANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSEL 180
+ D+KI SV+RLF+LP + F V++LDPPI++GQT Y ++VL F D EL
Sbjct: 228 KTFDYKIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIEL 287
Query: 181 LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKA 240
SE L KY+ KLE G ++EV +++ L G KIT PG F AV S KA
Sbjct: 288 PFSEAELRDKYEGKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKA 347
Query: 241 EDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFR 300
G LYPLE+ F ++ KPP I EEI V F R +GGS FD + LK H+F
Sbjct: 348 AAGYLYPLERGFIYIHKPPLHIRFEEISSVNFAR--SGGST-RSFDFEVTLKNGTVHIFS 404
Query: 301 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 353
+I++ EY LFD+I+ K L + N+G K+ D+++ D +L R+K
Sbjct: 405 SIEKEEYAKLFDYITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLK 457
>sp|Q5ALL8|POB3_CANAL FACT complex subunit POB3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=POB3 PE=3 SV=1
Length = 538
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 150/427 (35%), Positives = 232/427 (54%), Gaps = 32/427 (7%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNS--- 58
L F V K AFE+ +D+S + L GKN+V LEF++D+ +E ++E+ F++P +
Sbjct: 120 LIFNVNNKPAFEIPYSDISNSNLTGKNEVALEFNLDNNKNGDE---IVEMRFYVPGTIEN 176
Query: 59 NTQFVGDENH------------PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGR 106
T V +E + AQ F +++ AD+G EA+V+F + LTPRGR
Sbjct: 177 ETTIVKNETNGDVIEEAVVNETSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGR 236
Query: 107 YSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHI 166
Y ++++ S LRL+G+ D+KIQY + R+F LPK ++ H +V+ +DPP+R+GQT YP +
Sbjct: 237 YDIDMYPSSLRLRGKTYDYKIQYEQIERIFSLPKPDETHHLIVLQIDPPLRQGQTRYPFL 296
Query: 167 VLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFR 226
VLQF D + EL +S+E KYKD+L+ +Y + V + LRGL+ K+ PG F+
Sbjct: 297 VLQFVKDEETELELNVSDEDFEKKYKDRLKKTYDAPTNVVMSHCLRGLTERKLITPGAFQ 356
Query: 227 SAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFD 286
S V S+KA +G L+PL++ F F+ KP I + EI V R G S FD
Sbjct: 357 SRYLQAGVPCSVKASEGYLFPLDRCFLFVTKPTLYIPYSEISSVVMSRTGGGVSASRTFD 416
Query: 287 LLIR-LKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAV 345
L + + + Q H+F NI R E + F KG+K+ N + A+ QE +DD
Sbjct: 417 LEVNVIGSNQPHVFSNIDREEQEFIESFCKEKGVKVKNEEKIAKARLAKALEQEANDDD- 475
Query: 346 DPHLERIKNEAGGDESDE-------EDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEK 398
+ AG ++ DE DSD + D +P+ D EE +D+ E+ ++
Sbjct: 476 --DEDADMGSAGDEDEDEDVDFQSGSDSDVAEEFDSDAAPSSDDDEEMADSKET---DDR 530
Query: 399 PAKKESK 405
P KK++K
Sbjct: 531 PPKKKAK 537
>sp|O94529|POB3_SCHPO FACT complex subunit pob3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=pob3 PE=3 SV=1
Length = 512
Score = 233 bits (594), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 220/397 (55%), Gaps = 9/397 (2%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDD--TTGANEKDSLMEISFHIPNSN 59
L F V + AFE+ ++ V+ T L GKN+V LEF D + + D L+E+ ++P +
Sbjct: 118 LVFDVNSRPAFEIPISAVTNTNLSGKNEVALEFSTTDDKQIPSAQVDELVEMRLYVPGTT 177
Query: 60 TQ---FVGDE-NHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSF 115
+ G+E A +F + + AD+G +A+V+F I +LTPRGRY ++++ +
Sbjct: 178 AKEDAADGEEVEQNAANLFYESLKERADIGQAAGDAIVSFSEILLLTPRGRYDIDMYETC 237
Query: 116 LRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYV 175
+RL+G+ D+K++YSS+ LFLLPK ++ H V+ L+PP+R+GQT YP +V QF D
Sbjct: 238 MRLRGKTYDYKVEYSSINSLFLLPKPDEQHVVFVIGLEPPLRQGQTRYPFLVTQFVRDED 297
Query: 176 VQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVK 235
++ +L + E +L KY DK++ SY EV + I RGL+G K+T P +F S + AVK
Sbjct: 298 MEVDLNIEETVLKEKYADKVKASYDQPAFEVVSQIFRGLTGRKVTTPAEFLSHEGHAAVK 357
Query: 236 SSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ 295
S KA +G LY L+KSF F+PKP L+ +I V R S FDL L++
Sbjct: 358 CSYKANEGQLYCLDKSFLFIPKPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGT 417
Query: 296 EHLFRNIQRNEYHNLFDFISGKGLKIMN-LGDMKTTDGVAAVLQEDDDDAVDPHLERIKN 354
+ F NI R E L F+ K +KI N L D + + L ++D++ + E +
Sbjct: 418 SYQFSNINRVEQSALVAFLESKQIKIHNDLADETQQTLLTSALDDEDEEGDEEMEEALSE 477
Query: 355 EAGGDESDEEDSDFVADKDDGGSPTDDSGEEDSDASE 391
+ D E +SD + D+ +D+ G ++ SE
Sbjct: 478 DE--DFQAESESDVAEEYDENAESSDEEGASGAEGSE 512
>sp|Q2USL9|POB3_ASPOR FACT complex subunit pob3 OS=Aspergillus oryzae (strain ATCC 42149
/ RIB 40) GN=pob3 PE=3 SV=1
Length = 576
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 195/358 (54%), Gaps = 36/358 (10%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVD-DTTGANEK--------------- 45
L+F V + AFEV +++S T L GKN+V +E ++ D AN +
Sbjct: 114 LSFNVQNRPAFEVPYSEISNTNLAGKNEVAVELALNTDGADANAQPAGSTKNRGRKAASG 173
Query: 46 -DSLMEISFHIPNS-----------------NTQFVGDENHPPAQVFRDKIMSMADVGAG 87
D L+E+ F+IP + + E A +F + +M A++G
Sbjct: 174 PDELVEMRFYIPGTVMKTEKGIKEENGKEENGEEEEEGEEQNAANLFYEMLMEKAEIGDV 233
Query: 88 GEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTF 147
+ TF + LTPRGR+ ++++ S RL+G+ D+KIQYSS+ + FLLPK++ HT
Sbjct: 234 AGDTFATFLDVLHLTPRGRFDIDMYESSFRLRGKTYDYKIQYSSIKKFFLLPKNDDTHTL 293
Query: 148 VVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVF 207
+V+ LDPP+R+GQT YP +V+Q + D + EL M++EL+ T+YKDKLEP Y+ IH+V
Sbjct: 294 IVLGLDPPLRQGQTRYPFLVMQLKLDEEISLELNMTDELMETRYKDKLEPRYEEPIHQVV 353
Query: 208 TTILRGLSGAKITKPGK-FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEE 266
T I RGLSG K+ P K F S VK S+KA +G+LY L+KS F+PKP T I E
Sbjct: 354 TKIFRGLSGKKVIMPSKDFVSHHGHSGVKCSIKANEGLLYFLDKSLIFVPKPATYIQVEN 413
Query: 267 IDYVEFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMN 323
I + R S FD+ + LK EH F NI R E L +F K ++ N
Sbjct: 414 IAIITMSRVGGAVSASRTFDITVSLKAGMGEHQFSNINREEQQPLEEFFKAKNIRFKN 471
>sp|Q6BS60|POB3_DEBHA FACT complex subunit POB3 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=POB3 PE=3 SV=1
Length = 540
Score = 231 bits (590), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 152/429 (35%), Positives = 236/429 (55%), Gaps = 34/429 (7%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEK--DSLMEISFHIP--- 56
L F V K FE+ +++S + L GKN+V +EF++D GAN K D ++E+ F+IP
Sbjct: 123 LVFQVNNKPDFEIPYSEISNSNLTGKNEVAVEFNLD---GANSKAGDEMVEMRFYIPGTL 179
Query: 57 -NSNTQFVGDENH-----------PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPR 104
N T V +E + A VF +++ AD+G EA+V+F + LTPR
Sbjct: 180 ENETTPAVKNEENGEVKEEETEEISAATVFYEQLKDKADIGQVAGEAIVSFSDVLFLTPR 239
Query: 105 GRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYP 164
GRY ++++ + LRL+G+ D+KIQY+ + R+F LPK ++ H +V+ +DPP+R+GQT YP
Sbjct: 240 GRYDIDMYPTSLRLRGKTYDYKIQYNQIERIFSLPKPDEAHHLLVIQIDPPLRQGQTKYP 299
Query: 165 HIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGK 224
+V+QF + ++ +L +SEE N KYKD+L+ SY H V + +GL+ ++ PG
Sbjct: 300 FLVMQFAKEEEIELDLNVSEEEYNDKYKDRLKKSYDSQTHLVMSHCFKGLTERRLVVPGS 359
Query: 225 FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGG-SNMH 283
F+S + SLKA +G LYPL++ F F+ KP I EI + R AGG S
Sbjct: 360 FQSRFLQPGISCSLKASEGYLYPLDRCFLFVTKPTVYIPFSEISSITMSRTGAGGVSTSR 419
Query: 284 YFDLLIRLK-TEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDD 342
FD+ I L+ + Q H F +I+R E + ++ KGL+I N + A+ ++
Sbjct: 420 TFDMDITLRGSNQSHNFGSIEREEQETIENYCLQKGLRIKNEEKLAKAMLAKAM---NET 476
Query: 343 DAVDPHLERIKNEAGGDESDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGE----KEK 398
D + AG D+ + D DF + GS +D + E DSDAS S E ++
Sbjct: 477 ADDDDDADVDMGSAGDDDDESADDDF-----NSGSDSDVAEEFDSDASVSDAEMSDSNQE 531
Query: 399 PAKKESKKE 407
P +K+ K E
Sbjct: 532 PPQKKPKNE 540
>sp|Q4IJU0|POB3_GIBZE FACT complex subunit POB3 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=POB3 PE=3 SV=1
Length = 569
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 206/370 (55%), Gaps = 30/370 (8%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANE---------------KD 46
LTF V + AFE+ +++ T L G+N+V +E + ++ GAN +D
Sbjct: 118 LTFSVQNRPAFELPYSEIGNTNLAGRNEVAVEMALPES-GANAQLGGARSKGSKAAAGRD 176
Query: 47 SLMEISFHIPNSNTQFVGD------------ENHPPAQVFRDKIMSMADVGAGGEEAVVT 94
L+E+ F+IP T+ + + A +F + ++ A++G + + T
Sbjct: 177 QLVEMRFYIPGVTTRKEAEGEDAGSDAGNDEQEKNAATLFYETLIDKAEIGETAGDTIAT 236
Query: 95 FEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDP 154
F + LTPRGR+ ++++ + RL+G+ D+KIQY ++ + +LPK ++ H +V+ LDP
Sbjct: 237 FLDVLHLTPRGRFDIDMYEASFRLRGKTYDYKIQYEAIKKFMVLPKPDEVHYMLVMGLDP 296
Query: 155 PIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGL 214
P+R+GQT YP +V+QF+ D V +L ++EE L +KY+DKLEP Y+ +H+V I RGL
Sbjct: 297 PLRQGQTRYPFVVMQFKKDEEVTIDLNLNEEELKSKYQDKLEPHYEEPLHQVVAKIFRGL 356
Query: 215 SGAKITKPGK-FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFE 273
KI+ P K F + ++ Y +K S+KA +G LY LEK+F F+PKP T I +E+ V F
Sbjct: 357 GNRKISSPAKDFITHRNQYGIKCSIKASEGFLYCLEKAFMFVPKPATYIAYEQTQSVTFS 416
Query: 274 RHAAGGSNMHYFDLLIRLKT-EQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDG 332
R + S + FD+ + LK F NI R + L F KGL++ N D
Sbjct: 417 RVSGAVSALSTFDITVLLKNGAGSSQFSNISREDLKALESFFKLKGLRVKNEIDEDANLL 476
Query: 333 VAAVLQEDDD 342
AA+ Q+ DD
Sbjct: 477 AAAMNQQMDD 486
>sp|Q6C7V4|POB3_YARLI FACT complex subunit POB3 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=POB3 PE=3 SV=1
Length = 544
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 203/381 (53%), Gaps = 44/381 (11%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFH--VDDTTGANEKDSLMEISFHIPNSN 59
L F V K AFE+ A+V+ + L GKN+V LEF D G D L+E+ F++P
Sbjct: 127 LVFSVANKPAFEIPYAEVANSNLVGKNEVALEFQQPADGRAG----DELVEMRFYVPGV- 181
Query: 60 TQFVGDEN-------------------------------HPPAQVFRDKIMSMADVGAGG 88
T GDEN AQ+F D + AD+GA
Sbjct: 182 TSVEGDENPKKKQKTEKEGEEGKEGDDDADADDESEEEVQSTAQIFYDTLKEKADIGAVA 241
Query: 89 EEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFV 148
AVV+ I ++ PRGRY ++++ +F+RL+G+ D+ +QY V RL +LPK + H +
Sbjct: 242 GTAVVSLSEIYLVIPRGRYDIDMYANFMRLRGKTYDYMVQYKHVQRLIVLPKPDDLHNIL 301
Query: 149 VVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDK-LEPSYKGLIHEVF 207
VV LDPP+R+GQT YP +V+QF + ++ EL + + KY DK L+ SY H+V
Sbjct: 302 VVQLDPPLRQGQTRYPFLVMQFLREAEIKVELNVDDAEFAEKYADKGLKQSYDESAHQVV 361
Query: 208 TTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEI 267
+I RGL+G K+T PG F++ V SLKA +G LYPLE++F FL K P I EI
Sbjct: 362 GSIFRGLTGRKLTVPGSFKTVHGHAGVSCSLKASEGHLYPLERNFLFLSK-PVFIPFAEI 420
Query: 268 DYVEFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMN-LG 325
+ R + + FD+ ++L+ Q E+ F NI + E L FI KG+++ N L
Sbjct: 421 QDITLSRVGSSVTTSRTFDMTLKLRNAQGEYQFSNISKEEQEGLEAFIKSKGIRLKNDLA 480
Query: 326 DMKTTDGVAAVLQEDDDDAVD 346
+ K +AA L E DDD+ D
Sbjct: 481 EEKAL--LAATLAEVDDDSDD 499
>sp|Q54G78|SSRP1_DICDI FACT complex subunit SSRP1 OS=Dictyostelium discoideum GN=ssrp1
PE=3 SV=1
Length = 527
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/359 (36%), Positives = 201/359 (55%), Gaps = 37/359 (10%)
Query: 9 KQAFEVSLADVSQTQL--QGKNDVILEFHVDDTTGANEKDSLMEISFHIP---------- 56
K FE +++VSQ+ + KN++ LEFH D ++ ++++E+ F P
Sbjct: 132 KVGFEFPISEVSQSVIGANNKNELTLEFHHDKAMD-DDDETMVEMRFFTPIRPSKEGEEG 190
Query: 57 --------------NSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILT 102
+E + F+ IM+ +D+ + +++V F I LT
Sbjct: 191 GKEKKVGEDGEEDEEDEEDAEKEEEISALEQFQQTIMNKSDMVSNVGKSLVVFSAIQFLT 250
Query: 103 PRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTL 162
PRGR +E++ +FL+L G+ +D+K+ Y S+ RLF + +Q H F +++LDPPIR+GQT
Sbjct: 251 PRGRIDIEMYPTFLKLHGKTHDYKVPYESISRLFQFFRPDQKHIFFIISLDPPIRQGQTK 310
Query: 163 YPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKP 222
Y H+V+QF+ + + EL +++E L K+KD+L P G + + IL+ L+G KIT P
Sbjct: 311 YAHLVIQFQAEENIHLELNLTDE-LQQKFKDQLSPIMNGNANALICKILKALTGKKITIP 369
Query: 223 GKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAA----G 278
G F+S ++K SLKA +G LYPLE+ FFF+ KPPT I E+I +EF R+ A G
Sbjct: 370 GNFQSDSGANSIKCSLKANEGYLYPLERCFFFVHKPPTYIKFEDISNIEFARYGAPSVRG 429
Query: 279 GSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVL 337
GSN FDL I LK F NIQR EY +LF+F+ K L I+N T G A ++
Sbjct: 430 GSN-RTFDLSINLKNSTSIQFVNIQREEYPSLFNFLKEKKLSILN----PVTTGPAMII 483
>sp|O01683|SSP1B_CAEEL FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3
PE=3 SV=1
Length = 689
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 157/518 (30%), Positives = 262/518 (50%), Gaps = 38/518 (7%)
Query: 12 FEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPA 71
FE+ +VS + KN+ ILEFH ++ + K LME+ FH+P +E+
Sbjct: 128 FEIPCTNVSNV-IANKNEAILEFHQNEQS----KVQLMEMRFHMP---VDLENEEDTDKV 179
Query: 72 QVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSS 131
+ F+ +++ A + A E+ + I TPRGRY ++++ + + L G+ D+KI +
Sbjct: 180 EEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPVKT 239
Query: 132 VVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKY 191
+ RLFL+P + + V++L+PPIR+GQT Y +++ +F D EL +++E L+ +
Sbjct: 240 INRLFLVPHKDGRQVYFVLSLNPPIRQGQTHYSYLIFEFGKDEEEDLELSLTDEQLDY-F 298
Query: 192 KDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKS 251
L+ G I+E + + + + K+T PG+F + A++ + + G+LYP+EK
Sbjct: 299 NGNLQREMTGPIYETISILFKSICNLKVTVPGRFLGSSGTPAIQCTHRQNLGLLYPMEKG 358
Query: 252 FFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLF 311
F F+ KP I EEI F R + G+ FD I LKT F + + E + LF
Sbjct: 359 FLFIQKPVMYIRFEEISSCHFAR-SDSGTVTRTFDFEIDLKTGSSLTFSAMDKEENNKLF 417
Query: 312 DFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDEE------- 364
D+++ K +KI N D +A D+D +DP+ +K E G E D++
Sbjct: 418 DYLNKKEIKIRN---SHRIDNKSAGYGSSDEDDIDPYKSTVKAE--GREQDDDSDDESTD 472
Query: 365 -----DSDFVADKDDGGSPTDDSGEEDSDASESGGEKEKPAKKESKKESSSV-------- 411
D D K+D S ++ SG E D +SG EK+ ES + ++
Sbjct: 473 EDYDLDKDMKKQKNDKDS-SEGSGSEPDDEYDSGSEKDASGTGESDPDEENIEPKKKESK 531
Query: 412 KASTSKKKSRDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDV 471
+ ++K ++ KK KK KDPN PKRA + +I + R ++K+ G DV
Sbjct: 532 EKKNKREKKEKPVKEKAVKKGKKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDV 589
Query: 472 GRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 509
+ G +WK MS ++++ + KA DK RY+ E+ YK
Sbjct: 590 AKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYK 627
>sp|Q6FKI2|POB3_CANGA FACT complex subunit POB3 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=POB3 PE=3
SV=1
Length = 543
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 225/415 (54%), Gaps = 49/415 (11%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQ 61
+ F + K FE+ A ++ T L KN+V +EF++ D T D ++E+ F++P S
Sbjct: 123 MVFALNGKPVFEIPYARINNTNLTAKNEVAVEFNIQDDTYQPAGDEMVEMRFYLPGS--- 179
Query: 62 FVGDENHPP--------------------AQVFRDKIMSMADVGAGGEEAVVTFEGIAIL 101
V DE+ P A+ F +++ + AD+G +A+V+F+ +
Sbjct: 180 VVVDEDQPAPKKEGEEEGEEAAETETKSLAEAFYEELKNKADIGEIAGDAIVSFQDVFFT 239
Query: 102 TPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQT 161
TPRGRY ++++ + +RL+G+ ++K+Q++ + R+ LPK++ + VV+ +DPP+R+GQT
Sbjct: 240 TPRGRYDIDIYENSIRLRGKTYEYKLQHNQIQRIVSLPKADDINHLVVLAMDPPLRQGQT 299
Query: 162 LYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITK 221
YP +VLQF+ D + +L +S++ KYKDKL+ Y H V + +L+GL+G ++
Sbjct: 300 TYPFLVLQFQKDEETEVQLNLSDQEYEEKYKDKLKKQYDSKTHIVISHVLKGLTGRRVVV 359
Query: 222 PGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSN 281
PG+++S + AV S KA +G LYPL+ +FFFL KP I ++ V R ++
Sbjct: 360 PGEYKSKYEQCAVSCSYKANEGYLYPLDNAFFFLTKPTLYIPFNDVSSVVISRAGQTSTS 419
Query: 282 MHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQED 340
FDL + L++ + +F NI + E L +F+ K L++ N E+
Sbjct: 420 SRTFDLEVILRSNRGSTIFGNISKEEQQLLENFLKSKNLRVKN---------------EE 464
Query: 341 DDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDGGSPTDD----SGEEDSDASE 391
D V R+++ G D SD+ED + + +D S +D SG++D + +E
Sbjct: 465 KDAQV-----RLQSALGSD-SDDEDVNMGSAGEDDESVDEDFHVSSGDDDDEVAE 513
>sp|Q04636|POB3_YEAST FACT complex subunit POB3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POB3 PE=1 SV=1
Length = 552
Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 224/437 (51%), Gaps = 47/437 (10%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQ 61
+ F + K FE+ A ++ T L KN+V +EF++ D D L+E+ F+IP Q
Sbjct: 123 MVFALNGKPTFEIPYARINNTNLTSKNEVGIEFNIQDEEYQPAGDELVEMRFYIPGV-IQ 181
Query: 62 FVGDENHPP------------------------------AQVFRDKIMSMADVGAGGEEA 91
DEN A+ F +++ AD+G +A
Sbjct: 182 TNVDENMTKKEESSNEVVPKKEDGAEGEDVQMAVEEKSMAEAFYEELKEKADIGEVAGDA 241
Query: 92 VVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVT 151
+V+F+ + TPRGRY ++++ + +RL+G+ ++K+Q+ + R+ LPK++ H +V+
Sbjct: 242 IVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHLLVLA 301
Query: 152 LDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTIL 211
++PP+R+GQT YP +VLQF+ D + +L + +E YKDKL+ Y H V + +L
Sbjct: 302 IEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVL 361
Query: 212 RGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVE 271
+GL+ ++ PG+++S D AV S KA +G LYPL+ +FFFL KP I ++ V
Sbjct: 362 KGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVN 421
Query: 272 FERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTT 330
R ++ FDL + L++ + F NI + E L F+ K L++ N D +
Sbjct: 422 ISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKN-EDREVQ 480
Query: 331 DGVAAVLQEDDDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDGGSPTDDSGEE-DSDA 389
+ + L D D+ E I + G++ + D DF D+ D+ EE DSDA
Sbjct: 481 ERLQTALGSDSDE------EDINMGSAGEDDESVDEDFQVSSDNDA---DEVAEEFDSDA 531
Query: 390 ----SESGGEKEKPAKK 402
+E G ++E+P+KK
Sbjct: 532 ALSDAEGGSDEERPSKK 548
>sp|Q4P647|POB3_USTMA FACT complex subunit POB3 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=POB3 PE=3 SV=1
Length = 558
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 226/432 (52%), Gaps = 36/432 (8%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEF------------HVDDTTGANEK---- 45
+ F+V K AFE+ L+ ++ + + K +V +EF D G +
Sbjct: 129 VQFLVRDKLAFELPLSHLANSNI-AKTEVSMEFLNPEQQQPGANTGTSDVNGTKSRRSKG 187
Query: 46 DSLMEISFHIPNSNTQFVG-----------DENHPPAQVFRDKIMSMADVGAGGEEAVVT 94
D L+E+ ++P + G + A+ F + + S AD+G +++V
Sbjct: 188 DQLVEMRLYVPGQAIKDDGSDAASAQDDDVNNEETAAEAFHEALKSKADIGQVAGDSIVV 247
Query: 95 FEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDP 154
F+ + +LTPRGRY +++ +F+RL+G+ D+KI YSS+ +LFLLPK+++ H +V+ LDP
Sbjct: 248 FKEVLVLTPRGRYDIDVFSTFIRLRGKTYDYKILYSSMNKLFLLPKADEIHVMLVIGLDP 307
Query: 155 PIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGL 214
PIR+GQT YP++VLQF + + +EL + E+ + KY KL+ Y+ + T I + L
Sbjct: 308 PIRQGQTRYPYLVLQFPREEEMDAELNLDEQTIQEKYDGKLKKRYEEPTFRIVTNIFKVL 367
Query: 215 SGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFER 274
SG K+ P F S+ ++K ++KA DG LYPLEKS ++ K P + + EI R
Sbjct: 368 SGQKVATPTDFESSSGQTSIKCNVKAADGNLYPLEKSLLWVSKQPVYVPYSEIHQAILSR 427
Query: 275 HAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVA 334
++ FDL + K+ EH F++I R E L +++ + ++I N +T A
Sbjct: 428 VGGAVASSKTFDLRVATKSGTEHTFQSISREELDRLKAWLADRKVRIKNEMAEETGGLAA 487
Query: 335 AVLQEDDDDAVDPHLERIKNEAGG---DESDEEDSDFVADKD-DGGSPTDDSGEEDSDAS 390
A D D + AGG DE EED+DF AD D DGGSP++ S +E
Sbjct: 488 AAAAGLLSDDDDEEM----GAAGGADEDEDSEEDADFAADSDSDGGSPSEASSDEGEGGG 543
Query: 391 ESGGEKEKPAKK 402
E+P KK
Sbjct: 544 YDDEGDERPKKK 555
>sp|Q756X6|POB3_ASHGO FACT complex subunit POB3 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=POB3 PE=3 SV=1
Length = 542
Score = 208 bits (530), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 219/416 (52%), Gaps = 34/416 (8%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQ 61
L F + K FE+ + +S T L KN+V LEF + D L+E+ ++P TQ
Sbjct: 123 LIFSLNGKPTFEIPYSHISNTNLTSKNEVALEFDLQKDGYNPAGDELVEMRLYVPGVVTQ 182
Query: 62 FVGDENHPPAQ------------------VFRDKIMSMADVGAGGEEAVVTFEGIAILTP 103
D + PA+ F +++ + A++G +A+++F+ + TP
Sbjct: 183 --EDRHSSPAEDADVDMEKDNKEEKSIAEAFYEELRAKAEIGEVSGDAIISFQDVFFTTP 240
Query: 104 RGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLY 163
RGRY ++++ + +RL+G+ ++K+Q+ + R+F LPK++ H +V++++PP+R+GQT Y
Sbjct: 241 RGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIFSLPKADDIHHLMVLSIEPPLRQGQTTY 300
Query: 164 PHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPG 223
P++VLQF+ D + +L + ++ YKDKL+ Y H V + +L+GL+ ++ PG
Sbjct: 301 PYLVLQFQKDEETEVQLNVEDDEFERLYKDKLKKQYDAKTHVVLSHVLKGLTDTRVVVPG 360
Query: 224 KFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMH 283
+++S + AV S KA +G LYPL+ +F FL KP I +++ V R ++
Sbjct: 361 EYKSKHEQCAVSCSFKANEGHLYPLDNAFMFLTKPTLYIPFQDVSSVNISRAGQATTSSR 420
Query: 284 YFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDD 342
FDL + L++ + F NI + E L F+ K +++ N + +T + L D +
Sbjct: 421 TFDLEVVLRSNRGSTTFANISKEEQQILESFLKSKNVRVKN-EEKETQQRLQTALGSDSE 479
Query: 343 DAVDPHLERIKNEAGGDESDEEDSDFVADKDDGGSPTDDSGEE-DSDASESGGEKE 397
D E + + ++ + D DF A+ +D DD EE DSDA S E E
Sbjct: 480 D------EDVNMGSAAEDDESVDEDFQAESED-----DDVAEEFDSDAGVSESETE 524
>sp|P0CR74|POB3_CRYNJ FACT complex subunit POB3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=POB3 PE=3 SV=1
Length = 588
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 207/383 (54%), Gaps = 26/383 (6%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVD-----DTTGANEK--DSLMEISFH 54
L F V K AF+V L+ V+ + + GK +V LEF+ D N++ D ++E+ F+
Sbjct: 120 LVFQVQGKTAFDVPLSQVANSNIAGKYEVALEFNPPSNYKFDPKDLNKRPPDEMVEMRFY 179
Query: 55 IPNSNTQFVGDENHP---------------PAQVFRDKIMSMADVGAGGEEAVVTFEGIA 99
IP + + G + A F I AD+GA +++V FE
Sbjct: 180 IPGKSMKKAGSDAGSGGEETELDEEGNEVSAADAFHSLIKEKADIGAVVGDSIVVFEDCL 239
Query: 100 ILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKG 159
ILTPRGR+S+E++ +RL G++ D ++ ++S+ R+FLLPK + H +V+ LDPPIR+G
Sbjct: 240 ILTPRGRFSIEVYADSIRLVGKSTDHRVPFTSIHRIFLLPKLDDLHVQLVLGLDPPIRQG 299
Query: 160 QTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKI 219
T YP +V Q+ D VV +EL +++E L +Y D LE +Y+ +V + +L+ L+G K+
Sbjct: 300 ATRYPFLVAQWPKDEVVNAELNLTDEEL-AQYPD-LEKTYEATTFQVVSRVLKALTGKKV 357
Query: 220 TKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGG 279
T PG R+AQ +++++KA G LY LEK F+ K P LI + D + F R G
Sbjct: 358 TPPGSLRNAQGLNGIRANVKAVQGELYFLEKGLIFISKQPILIDFSKTDSISFSRVGGGV 417
Query: 280 SNMHYFDLLIRLKT-EQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQ 338
++ FD+ + KT +H+F I + E + F+ K +++ N + D +
Sbjct: 418 ASARTFDMRVVSKTGGADHVFSAINKQEVGPISSFLQSKNIRLKNEMEEAIVD-IDEPFS 476
Query: 339 EDDDDAVDPHLERIKNEAGGDES 361
+DD++ P + ++A D+S
Sbjct: 477 DDDEEMESPSEDERPSKAKNDKS 499
>sp|P0CR75|POB3_CRYNB FACT complex subunit POB3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=POB3 PE=3 SV=1
Length = 588
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 207/383 (54%), Gaps = 26/383 (6%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVD-----DTTGANEK--DSLMEISFH 54
L F V K AF+V L+ V+ + + GK +V LEF+ D N++ D ++E+ F+
Sbjct: 120 LVFQVQGKTAFDVPLSQVANSNIAGKYEVALEFNPPSNYKFDPKDLNKRPPDEMVEMRFY 179
Query: 55 IPNSNTQFVGDENHP---------------PAQVFRDKIMSMADVGAGGEEAVVTFEGIA 99
IP + + G + A F I AD+GA +++V FE
Sbjct: 180 IPGKSMKKAGSDAGSGGEETELDEEGNEVSAADAFHSLIKEKADIGAVVGDSIVVFEDCL 239
Query: 100 ILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKG 159
ILTPRGR+S+E++ +RL G++ D ++ ++S+ R+FLLPK + H +V+ LDPPIR+G
Sbjct: 240 ILTPRGRFSIEVYADSIRLVGKSTDHRVPFTSIHRIFLLPKLDDLHVQLVLGLDPPIRQG 299
Query: 160 QTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKI 219
T YP +V Q+ D VV +EL +++E L +Y D LE +Y+ +V + +L+ L+G K+
Sbjct: 300 ATRYPFLVAQWPKDEVVNAELNLTDEEL-AQYPD-LEKTYEATTFQVVSRVLKALTGKKV 357
Query: 220 TKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGG 279
T PG R+AQ +++++KA G LY LEK F+ K P LI + D + F R G
Sbjct: 358 TPPGSLRNAQGLNGIRANVKAVQGELYFLEKGLIFISKQPILIDFSKTDSISFSRVGGGV 417
Query: 280 SNMHYFDLLIRLKT-EQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQ 338
++ FD+ + KT +H+F I + E + F+ K +++ N + D +
Sbjct: 418 ASARTFDMRVVSKTGGADHVFSAINKQEVGPISSFLQSKNIRLKNEMEEAIVD-IDEPFS 476
Query: 339 EDDDDAVDPHLERIKNEAGGDES 361
+DD++ P + ++A D+S
Sbjct: 477 DDDEEMESPSEDERPSKAKNDKS 499
>sp|P41848|SSP1A_CAEEL FACT complex subunit SSRP1-A OS=Caenorhabditis elegans GN=hmg-4
PE=3 SV=1
Length = 697
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 157/531 (29%), Positives = 257/531 (48%), Gaps = 53/531 (9%)
Query: 4 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 63
F K FE+ +VS + KN+ +LEFH +D + K LME+ FH+P
Sbjct: 120 FSWEDKPIFEIPCTNVSNV-IANKNEAVLEFHQND----DSKVQLMEMRFHMP---IDLE 171
Query: 64 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 123
+E+ + F+ +++ A + A E+ + I TPRGRY ++++ + + L G+
Sbjct: 172 NEEDADKVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTY 231
Query: 124 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 183
D+KI S+ RLFL+P + H + V++L+PPIR+GQT Y +++ +F D EL ++
Sbjct: 232 DYKIPIKSINRLFLVPHKDGRHVYFVLSLNPPIRQGQTRYSYLIFEFGKDEEQDLELALT 291
Query: 184 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 243
+E L + L G I+E + + + + KIT PG+F + A++ + + G
Sbjct: 292 DEQLESS-NGNLRRDMTGPIYETISILFKSICNLKITVPGRFLGSSGTPAIQCTHRQNPG 350
Query: 244 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 303
+LYP+EK F F+ KP I EEI F R + G+ FD I LK F ++
Sbjct: 351 LLYPMEKGFLFIHKPAMYIRFEEISSCHFAR-SDSGTVTRTFDFEIDLKYGGPLTFNAME 409
Query: 304 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEA------- 356
+ E + LFD+++ K +KI N + V + + DD +DP+ + E
Sbjct: 410 KEENNKLFDYLNKKNIKIRN------SQRVENTVADSSDDEIDPYKAAVTAEGRQRDDSD 463
Query: 357 ------------------GGDESDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEK 398
ES E D+ D GS D SG + SE E++
Sbjct: 464 DDSTDEDYDLDKDIKKKKEDKESSEGTGSEPDDEYDSGSEQDSSG---TGESEPDSEQDV 520
Query: 399 PAKKESKKESSSVKASTSKKKSRDGDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMEREN 458
P+K+ + + ++K + KK KK KDPNAPKRA S ++ + R
Sbjct: 521 PSKRRKGEPKEKREKKEKREKK-------EGKKGKKDKDPNAPKRATSAYMQWFLASRNE 573
Query: 459 IKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 509
+K+ +A DV + G +WK MS ++++ +E KA DK RY+ E+ Y+
Sbjct: 574 LKEDGDSVA--DVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYR 622
>sp|Q6CWD7|POB3_KLULA FACT complex subunit POB3 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=POB3 PE=3 SV=1
Length = 555
Score = 199 bits (507), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 130/439 (29%), Positives = 216/439 (49%), Gaps = 48/439 (10%)
Query: 2 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQ 61
+ F + K FE+ ++ T L KN++ LEF + D L+E+ ++P + +
Sbjct: 123 MVFSLNGKPTFEIPYTHINNTNLTAKNEIALEFDTQNEAYNPAGDELVEMRLYVPGTVEE 182
Query: 62 -------FVGDENHPP------------------------AQVFRDKIMSMADVGAGGEE 90
V DE A+ F +++ S AD+G +
Sbjct: 183 NEDQDQIMVKDEAEAEDGVKSEVKTEEGSEEPDVQEEKTLAEYFYEELRSKADIGEISGD 242
Query: 91 AVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVV 150
A+++F+ + TPRGRY ++++ + +RL+G+ ++K+Q+ + R+F LPK++ H +V+
Sbjct: 243 AIISFQDLFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQINRIFSLPKADDIHYLMVL 302
Query: 151 TLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTI 210
++DPPIR+GQT YP +VLQF+ D + +L + ++ YKDKL+ Y H V + +
Sbjct: 303 SIDPPIRQGQTSYPFLVLQFQKDEETEVQLNVEDDEFEKLYKDKLKKQYDAKTHIVLSHV 362
Query: 211 LRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYV 270
L+GL+G ++ PG+++S D AV S K +G LYPL+ +F FL KP I ++I V
Sbjct: 363 LKGLTGRRVIVPGEYKSKYDQCAVSCSYKVNEGHLYPLDNAFLFLTKPTLYIPFQDIAAV 422
Query: 271 EFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKT 329
R ++ FDL + ++ + F NI + E L F+ K L++ N
Sbjct: 423 NISRAGQTSTSARTFDLEVVMRANRGTTTFANISKEEQQLLETFLRSKNLRVKN-----E 477
Query: 330 TDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDGGSPTDDSGEE-DSD 388
LQ D I + G++ + D DF A +D DD EE DS+
Sbjct: 478 DKEAEQRLQTAFGSDSDDDDVDINMGSAGEDEESVDEDFHASDED-----DDVAEEFDSE 532
Query: 389 ASESGGE-----KEKPAKK 402
AS S E E+P+KK
Sbjct: 533 ASASDSEGETSKSERPSKK 551
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 66/82 (80%)
Query: 427 GKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEE 486
GK +K++ KKDPNAPKR +S ++FF+ +REN+++ NPG++F VG++LGERWK +S ++
Sbjct: 12 GKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGKILGERWKALSDKQ 71
Query: 487 REPYESKARADKKRYKDEISGY 508
R PYE+KA ADKKRY+DE Y
Sbjct: 72 RAPYEAKAAADKKRYEDEKQAY 93
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 62/77 (80%)
Query: 432 QKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYE 491
++ KKDPNAPKR +S ++FF+ +REN+++ NPGI+F VG++LGERWK ++ ++R PYE
Sbjct: 15 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYE 74
Query: 492 SKARADKKRYKDEISGY 508
+KA ADKKRY+DE Y
Sbjct: 75 AKAAADKKRYEDEKQAY 91
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 429 KKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEERE 488
K+ ++KKKDPNAPKR +S ++FF+ R+ +++ NPGI+F VG++LGERWK +S ER
Sbjct: 13 KRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERR 72
Query: 489 PYESKARADKKRYKDEISGY 508
PYE KA ADKKRY+DE + Y
Sbjct: 73 PYEEKAAADKKRYEDEKASY 92
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 62/77 (80%)
Query: 433 KKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYES 492
+KKKDPNAPKR +S ++FF+ R+ +++ NPGI+F VG++LGE+WK +S +ER+PYE
Sbjct: 19 RKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYED 78
Query: 493 KARADKKRYKDEISGYK 509
KA ADKKRY+DE + YK
Sbjct: 79 KAAADKKRYEDEKAAYK 95
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%)
Query: 428 KKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEER 487
+KK Q+KKKDPNAPKRA+S ++FF+ R+ ++ NPGI F VGR+LGE+WK ++ +E+
Sbjct: 5 RKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEK 64
Query: 488 EPYESKARADKKRYKDEISGY 508
PYE+KA ADKKRY+ E Y
Sbjct: 65 APYEAKAEADKKRYESEKELY 85
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 61/81 (75%)
Query: 428 KKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEER 487
KK+ ++KKDPNAPKR +S ++FF+ R+ ++ NP + F VGR+LGERWK ++ EE+
Sbjct: 14 KKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEK 73
Query: 488 EPYESKARADKKRYKDEISGY 508
+PYESKA+ADKKRY+ E Y
Sbjct: 74 QPYESKAQADKKRYESEKELY 94
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 57/76 (75%)
Query: 437 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARA 496
DPNAPKRAMS ++FF+ R+ ++ NPGI+F VGRVLGE+WK +S +E++PYE+KA A
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPGISFGQVGRVLGEKWKALSDDEKQPYEAKAEA 76
Query: 497 DKKRYKDEISGYKNPK 512
DKKRY+ E Y K
Sbjct: 77 DKKRYESEKELYNATK 92
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 55/73 (75%)
Query: 437 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARA 496
DPNAPKRA+S ++FF+ R+ I+ NPGIAF VG+ LGE+WK ++ E+ PYE KA A
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNPGIAFGQVGKALGEKWKTLTDAEKVPYEEKATA 80
Query: 497 DKKRYKDEISGYK 509
DKKRY+DE + YK
Sbjct: 81 DKKRYEDEKAAYK 93
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 53/78 (67%)
Query: 431 KQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY 490
K +KKDPN PKR MS F+FFS RE +K NP F +G +LG+RWK+++ EREPY
Sbjct: 6 KSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPY 65
Query: 491 ESKARADKKRYKDEISGY 508
E KAR DK+RY+ E Y
Sbjct: 66 EEKARQDKERYERERKEY 83
>sp|P11632|NHP6A_YEAST Non-histone chromosomal protein 6A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6A PE=1 SV=1
Length = 93
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 54/72 (75%)
Query: 437 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARA 496
DPNAPKRA+S ++FF+ R+ ++ NP I F VG+ LGE+WK ++ EE++PYE+KA+A
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQA 76
Query: 497 DKKRYKDEISGY 508
DKKRY+ E Y
Sbjct: 77 DKKRYESEKELY 88
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 57/78 (73%)
Query: 431 KQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY 490
K++ KKDPN PKRA+S ++FF Q RE IK NP F DVG++LG +W++M+ E++PY
Sbjct: 18 KKRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEATFGDVGKLLGIKWREMNENEKKPY 77
Query: 491 ESKARADKKRYKDEISGY 508
E+KA+ADK+R E + Y
Sbjct: 78 EAKAKADKERADRENADY 95
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3 SV=1
Length = 116
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 57/78 (73%)
Query: 431 KQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY 490
K++ KKDPN PKRA+S ++FF Q RE IK NP F DVG++LG +W++M+ E++PY
Sbjct: 18 KKRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEATFGDVGKLLGIKWREMNENEKKPY 77
Query: 491 ESKARADKKRYKDEISGY 508
E+KA+ADK+R E + Y
Sbjct: 78 EAKAKADKERADRENADY 95
>sp|Q9UVL1|NHP6_CANAL Non-histone chromosomal protein 6 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=NHP6 PE=3 SV=1
Length = 92
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 56/72 (77%)
Query: 437 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARA 496
DP+APKR++S ++FF+ R+ ++ NPGI+F VG++LGE+WK ++ E++ PYE+KA A
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEA 74
Query: 497 DKKRYKDEISGY 508
DKKRY+ E + Y
Sbjct: 75 DKKRYEKEKAEY 86
>sp|Q6BRB4|NHP6_DEBHA Non-histone chromosomal protein 6 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NHP6 PE=3 SV=1
Length = 92
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 55/72 (76%)
Query: 437 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARA 496
DP+APKR++S ++FF+ R+ ++ NPGI+F VG++LGE+WK ++ E++ PYE+KA
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALTPEDKIPYENKADT 74
Query: 497 DKKRYKDEISGY 508
DKKRY+ E + Y
Sbjct: 75 DKKRYEKEKAEY 86
>sp|Q09390|HMG12_CAEEL High mobility group protein 1.2 OS=Caenorhabditis elegans
GN=hmg-1.2 PE=2 SV=2
Length = 235
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 423 GDEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKM 482
G ED +K+++ KKDP+APKRA+S F F+SQ +R I+ +P V + LG+ WK +
Sbjct: 117 GGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLV 176
Query: 483 SVEEREPYESKARADKKRYKDEISGYK 509
E ++ YE KA+ADK RY DE+ YK
Sbjct: 177 PQETKDMYEQKAQADKDRYADEMRNYK 203
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 446 SGFIFFSQMERENIKKSNPG--IAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKD 503
S + FF +M E KK P + T++ + E+WK M +E+ + A+ D +RY+
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQA 109
Query: 504 EIS 506
E+S
Sbjct: 110 EVS 112
>sp|Q4PBZ9|NHP6_USTMA Non-histone chromosomal protein 6 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=NHP6 PE=3 SV=2
Length = 99
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 428 KKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEER 487
+K+ K KKDP+APKR +S ++FFSQ +RE +K +NP F +VGR+LG +WK+MS E+
Sbjct: 15 QKRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPEAGFGEVGRLLGAKWKEMSEAEK 74
Query: 488 EPYESKARAD 497
+PY A D
Sbjct: 75 KPYNDMANRD 84
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 OS=Drosophila melanogaster GN=Dsp1
PE=2 SV=1
Length = 393
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 427 GKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEE 486
G+ KK+K+ KDPNAPKR++S F +F ER +K NP D+ + LG +W + E
Sbjct: 257 GRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEV 316
Query: 487 REPYESKARADKKRYKDEISGYK 509
++ YES A DK RY+ E++ YK
Sbjct: 317 KQKYESMAERDKARYEREMTEYK 339
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 441 PKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKARADK 498
P+ M+ + +F Q RE KK +P + F + R ERWK M +E++ + A DK
Sbjct: 179 PRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDK 238
Query: 499 KRYKDEISGYKNPKPMDIDSG 519
+RY+ E+ Y PK + G
Sbjct: 239 QRYEAEMQNYVPPKGAVVGRG 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,622,499
Number of Sequences: 539616
Number of extensions: 9550127
Number of successful extensions: 93686
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 1742
Number of HSP's that attempted gapping in prelim test: 48260
Number of HSP's gapped (non-prelim): 21432
length of query: 525
length of database: 191,569,459
effective HSP length: 122
effective length of query: 403
effective length of database: 125,736,307
effective search space: 50671731721
effective search space used: 50671731721
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)