Query 009802
Match_columns 525
No_of_seqs 349 out of 1408
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:19:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gcl_A Hypothetical 63.0 kDa p 100.0 1.2E-79 4E-84 609.0 25.1 257 69-325 2-259 (261)
2 3fss_A Histone chaperone RTT10 100.0 3.4E-31 1.2E-35 253.7 23.2 211 88-317 5-237 (237)
3 2co9_A Thymus high mobility gr 99.8 1.5E-21 5E-26 168.0 5.2 93 430-522 7-99 (102)
4 1k99_A Upstream binding factor 99.8 3.7E-21 1.3E-25 164.5 5.8 83 432-514 2-84 (99)
5 2eqz_A High mobility group pro 99.8 6.3E-21 2.1E-25 158.9 5.6 80 430-509 5-86 (86)
6 1hme_A High mobility group pro 99.8 1.3E-20 4.5E-25 153.5 6.2 77 435-511 1-77 (77)
7 1aab_A High mobility group pro 99.8 1.5E-20 5.3E-25 155.4 5.8 79 435-513 2-82 (83)
8 2lhj_A High mobility group pro 99.8 8E-21 2.7E-25 161.8 4.1 84 428-511 10-95 (97)
9 1wgf_A Upstream binding factor 99.8 5.4E-21 1.9E-25 160.7 2.0 83 427-509 7-89 (90)
10 2e6o_A HMG box-containing prot 99.8 5.4E-20 1.8E-24 153.6 6.0 77 433-509 10-86 (87)
11 1cg7_A Protein (NON histone pr 99.8 3.7E-21 1.3E-25 162.7 -1.4 84 429-512 9-92 (93)
12 2cs1_A PMS1 protein homolog 1; 99.8 5.9E-20 2E-24 154.9 5.4 81 435-515 2-82 (92)
13 1hry_A Human SRY; DNA, DNA-bin 99.8 9.6E-20 3.3E-24 148.0 5.6 75 437-511 1-75 (76)
14 2crj_A SWI/SNF-related matrix- 99.8 7.5E-20 2.6E-24 154.3 4.5 78 435-512 2-79 (92)
15 3nm9_A HMG-D, high mobility gr 99.8 7.5E-20 2.6E-24 147.6 3.1 72 438-511 1-72 (73)
16 1ckt_A High mobility group 1 p 99.8 2.3E-19 7.7E-24 143.8 5.3 69 440-508 1-71 (71)
17 1wxl_A Single-strand recogniti 99.8 1.9E-19 6.5E-24 145.2 4.7 72 438-511 1-72 (73)
18 1wz6_A HMG-box transcription f 99.8 2.5E-19 8.4E-24 147.8 4.2 77 436-512 3-79 (82)
19 1l8y_A Upstream binding factor 99.7 5.3E-19 1.8E-23 147.7 4.8 75 439-514 3-77 (91)
20 1j46_A SRY, sex-determining re 99.7 8.4E-19 2.9E-23 145.7 5.7 75 438-512 2-76 (85)
21 4a3n_A Transcription factor SO 99.7 3.8E-19 1.3E-23 142.3 3.1 71 439-509 1-71 (71)
22 4euw_A Transcription factor SO 99.7 1E-18 3.4E-23 151.3 5.4 80 432-511 21-100 (106)
23 1gt0_D Transcription factor SO 99.7 1.4E-18 4.7E-23 142.6 5.4 74 439-512 1-74 (80)
24 3f27_D Transcription factor SO 99.7 1.3E-18 4.3E-23 143.8 4.6 75 437-511 3-77 (83)
25 2gzk_A Sex-determining region 99.7 1.6E-18 5.3E-23 160.4 4.7 81 431-511 79-159 (159)
26 3u2b_C Transcription factor SO 99.7 2.1E-18 7.1E-23 141.0 4.7 73 439-511 1-73 (79)
27 2lef_A LEF-1 HMG, protein (lym 99.7 3E-18 1E-22 142.5 5.6 73 439-511 1-73 (86)
28 1i11_A Transcription factor SO 99.7 2.3E-18 7.8E-23 141.6 4.5 74 438-511 2-75 (81)
29 3fgh_A Transcription factor A, 99.7 2.2E-18 7.5E-23 136.6 2.9 66 439-508 1-66 (67)
30 1v64_A Nucleolar transcription 99.7 2E-18 6.8E-23 149.8 2.0 79 431-513 7-86 (108)
31 2yrq_A High mobility group pro 99.7 9.2E-18 3.1E-22 157.5 4.8 80 432-511 93-172 (173)
32 2yrq_A High mobility group pro 99.7 2.2E-17 7.4E-22 154.9 5.6 84 430-513 5-90 (173)
33 1v63_A Nucleolar transcription 99.7 2.4E-17 8.2E-22 141.4 3.1 78 436-515 4-81 (101)
34 2d7l_A WD repeat and HMG-box D 99.6 2.8E-17 9.5E-22 135.3 1.9 63 436-498 1-64 (81)
35 2cto_A Novel protein; high mob 99.6 8.7E-17 3E-21 135.5 4.2 75 435-511 5-82 (93)
36 2yuk_A Myeloid/lymphoid or mix 99.6 1.1E-17 3.8E-22 139.8 -3.1 71 431-505 13-85 (90)
37 3tmm_A Transcription factor A, 99.6 1.7E-16 5.7E-21 156.3 0.4 79 434-512 35-113 (238)
38 3tq6_A Transcription factor A, 99.6 4.9E-16 1.7E-20 150.6 1.3 76 437-512 6-81 (214)
39 3tq6_A Transcription factor A, 99.5 3.4E-16 1.2E-20 151.7 -3.1 77 432-512 106-182 (214)
40 3tmm_A Transcription factor A, 99.5 4.4E-16 1.5E-20 153.3 -3.1 77 432-512 138-214 (238)
41 2gzk_A Sex-determining region 99.5 2.1E-14 7.2E-19 132.6 5.7 74 438-511 2-75 (159)
42 3f5r_A FACT complex subunit PO 96.5 0.013 4.3E-07 54.9 9.8 79 240-324 35-125 (191)
43 1y5o_A TFB1, RNA polymerase II 58.4 51 0.0017 28.0 8.6 77 233-316 4-106 (115)
44 2qgu_A Probable signal peptide 46.1 17 0.00058 34.1 4.2 48 464-511 70-119 (211)
45 3hsa_A Pleckstrin homology dom 45.6 1.1E+02 0.0038 26.4 8.9 80 233-315 33-121 (126)
46 1pfj_A TFIIH basal transcripti 44.8 53 0.0018 27.7 6.6 76 236-316 15-98 (108)
47 2ca6_A RAN GTPase-activating p 43.3 6.6 0.00022 39.4 0.9 23 302-324 286-310 (386)
48 3u12_A USP37 protein; structur 42.4 1E+02 0.0035 27.1 8.2 56 257-317 62-118 (141)
49 2ca6_A RAN GTPase-activating p 35.4 9.9 0.00034 38.1 0.7 7 309-315 263-269 (386)
50 3b77_A Uncharacterized protein 27.6 3.7E+02 0.013 24.8 10.6 92 218-314 6-118 (193)
51 2y6t_E Ecotin, chymotrypsinoge 24.4 2.8E+02 0.0095 24.6 8.1 34 146-180 101-135 (148)
52 1j8r_A PAPG adhesin, pyeloneph 24.2 15 0.00052 33.2 -0.1 39 101-142 143-185 (196)
53 2yf0_A Myotubularin-related pr 23.2 2.2E+02 0.0075 30.3 8.6 73 238-316 22-97 (512)
54 3sam_A 62 kDa protein, rifampi 22.7 1.6E+02 0.0055 31.1 7.0 98 9-120 250-377 (576)
55 2cay_A VPS36 PH domain, vacuol 22.5 84 0.0029 27.7 4.4 39 239-277 49-92 (145)
No 1
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=100.00 E-value=1.2e-79 Score=609.05 Aligned_cols=257 Identities=34% Similarity=0.650 Sum_probs=227.6
Q ss_pred ChHHHHHHHHHhhcccCcCCcceEEEEcCceeeccCcceeEEEecCcEEEEccceeeeeecCceeEEEecccCCCCcEEE
Q 009802 69 PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFV 148 (525)
Q Consensus 69 ~~~~~~~~~i~~~a~~~~~~g~~i~~~~~i~~~~PRgry~le~~~~~lrl~gkt~d~~I~y~~I~~~f~lP~~~~~~~~~ 148 (525)
++|++|+++||+||+|++++|++||+|+||+|+||||||+|+||.++|||||+||||+|+|++|+|+||||+|++.|++|
T Consensus 2 ~~~~~~~~~i~~ka~i~~~~gd~i~~~~dv~~ltPRGrydi~~~~~~lrl~gkt~dyki~~~~I~r~f~LP~pd~~~~~~ 81 (261)
T 2gcl_A 2 HMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMM 81 (261)
T ss_dssp ------------------CCTTSSEEEEEEEEEETTEEEEEEECSSEEEEEESSCEEEEEGGGEEEEEEEECTTSSEEEE
T ss_pred cHHHHHHHHHHhhccccccCCceEEEEcCceEEcCCCceEEEEecCcEEEeCCcccceechhhEEEEEEccCCCcCceEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccCCCcccceEEEEEEecceeeeeccCcHHHHhHhhhcccccccccchHHHHHHHHhhhcCCeeccCCCcccC
Q 009802 149 VVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSA 228 (525)
Q Consensus 149 v~~L~~Pi~~Gqt~y~~lv~~f~~~~~~~~~l~~~~e~~~~k~~~~l~~~~~g~~~ev~~~~~k~l~~~ki~~P~~F~s~ 228 (525)
||+|+||||||||+|++|||||++++++++++|+++++++++|+++|.++|+|++|++|+++|++|+|++++.|+.|.|+
T Consensus 82 vi~ld~PirqGqt~y~~lV~qf~~~e~~~~~ln~~~~~~~~ky~~~L~~~~~g~~~~vv~~ilk~l~g~kv~~P~~F~S~ 161 (261)
T 2gcl_A 82 VMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSK 161 (261)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTCEEEEECCCCHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCCEECCCSCCCT
T ss_pred EEecCCCccCCCccCCeEEEEEeCCCceEeeecCCHHHHhhhhccccccccCCcHHHHHHHHHHHhcCCeeecCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeecCcceEEEecCcceeeccCCCeEEecCceeEEEEEEecCCCCceeeEeEEEEEeCC-ceEEEeccchhhh
Q 009802 229 QDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE-QEHLFRNIQRNEY 307 (525)
Q Consensus 229 ~~~~~v~c~~ka~~G~Lypl~~~llfl~KPp~~i~~~eI~~V~feRv~~~~~~~rtFDl~i~~K~~-~~~~Fs~I~~~e~ 307 (525)
.+++||+|++||++|+||||++||||+||||+||+|++|++|+|+|||++++++|||||+|++|+| ++++|+||+|+||
T Consensus 162 ~~~~~Vkcs~ka~eG~LypL~~gflF~~KP~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~ 241 (261)
T 2gcl_A 162 YDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQ 241 (261)
T ss_dssp TSCSCEEEEETTEEEEEEECSSEEEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGH
T ss_pred CCCceEEEeccCCceEEEEecCceEEeeCCcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCCCccEEEcccCHHHH
Confidence 999999999999999999999999999999999999999999999997765556999999999998 9999999999999
Q ss_pred hhHHHHHhcCCceEeecC
Q 009802 308 HNLFDFISGKGLKIMNLG 325 (525)
Q Consensus 308 ~~l~~~l~~k~i~~~~~~ 325 (525)
++|.+||++|||+|+|++
T Consensus 242 ~~L~~ylk~k~l~ikn~~ 259 (261)
T 2gcl_A 242 QLLEQFLKSKNLRVKNED 259 (261)
T ss_dssp HHHHHHHHHTTCCEEC--
T ss_pred HHHHHHHHHcCCeeecCC
Confidence 999999999999999873
No 2
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=99.98 E-value=3.4e-31 Score=253.67 Aligned_cols=211 Identities=18% Similarity=0.322 Sum_probs=153.0
Q ss_pred CcceEEEEcCceeecc-CcceeEEEecC---c--EEEEccce--eeeee--cCceeEEEecccCCCCcE-EEEEecCCcc
Q 009802 88 GEEAVVTFEGIAILTP-RGRYSVELHLS---F--LRLQGQAN--DFKIQ--YSSVVRLFLLPKSNQPHT-FVVVTLDPPI 156 (525)
Q Consensus 88 ~g~~i~~~~~i~~~~P-Rgry~le~~~~---~--lrl~gkt~--d~~I~--y~~I~~~f~lP~~~~~~~-~~v~~L~~Pi 156 (525)
..+.|..+.+|+|++| |+|++|.+|-+ + +.-..+++ ++.|. +++|+-++|||.|....+ ++.| ...+.
T Consensus 5 ~~~iIfei~~vS~~sP~RKKlnl~~hl~~~~~~P~lsi~~~~~~E~si~~l~~~i~~~~~LPvpeK~~~~~l~i-~~~~~ 83 (237)
T 3fss_A 5 ETNTIFKLEGVSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIYLFM-TYTSC 83 (237)
T ss_dssp -CEEEEEEEEEEEEESSCEEEEEEEEECTTTCCEEEEEEETTEEEEEECCHHHHEEEEEEEECTTCTTEEEEEE-EESCC
T ss_pred cceEEEEecceeEeccccceEEEEEEECCCCCceEEEEecCCCceEEhhhhhcceeEEEEecCCccCCceEEEE-EecCC
Confidence 3568999999999999 99999999943 1 33333443 36666 999999999999986543 3333 33343
Q ss_pred cCCCcccceEEEEEEecceeeeeccCcHHHHhHhhhcccccccccchHHHHHHHHh---hhcCCeeccCCCccc------
Q 009802 157 RKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILR---GLSGAKITKPGKFRS------ 227 (525)
Q Consensus 157 ~~Gqt~y~~lv~~f~~~~~~~~~l~~~~e~~~~k~~~~l~~~~~g~~~ev~~~~~k---~l~~~ki~~P~~F~s------ 227 (525)
.- .+.-..|++|++.+.. -.++ .-.+.+...-. . |+-+..-++ .|||.++.-|..+.+
T Consensus 84 ~~-~~~~dPiv~t~n~~~~--------~kq~--~~~g~~~~~~~-~-f~~~i~~~~rQ~~l~G~~i~~pf~~~~~~~~~~ 150 (237)
T 3fss_A 84 ED-NKFSEPVVMTLNKENT--------LNQF--KKLGLLDSNVT-D-FEKCVEYIRKQAILTGFKISNPFVNSTLVDTDA 150 (237)
T ss_dssp GG-GCCCSCEEEEEEHHHH--------HHHH--HHTTSSCTTCC-C-THHHHHHHHHHHHHTTCCCBCTTC---------
T ss_pred CC-CCCCCCEEEEEchHHh--------hhhh--hhcCCCcccch-h-HHHHHHHHHHHHhhcCeeccCcccccccccCCC
Confidence 32 2334458999875421 1111 11233433333 2 222222222 578999877764332
Q ss_pred -CCCcceEEEeecCcceEEEecCcceee-ccCCCeEEecCceeEEEEEEecCCCCceeeEeEEEEEeCCceEEEeccchh
Q 009802 228 -AQDGYAVKSSLKAEDGVLYPLEKSFFF-LPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRN 305 (525)
Q Consensus 228 -~~~~~~v~c~~ka~~G~Lypl~~~llf-l~KPp~~i~~~eI~~V~feRv~~~~~~~rtFDl~i~~K~~~~~~Fs~I~~~ 305 (525)
....++|+|++||++|+||||++|||| ++||++||++++|++|+|+||++ |||||+|++|+|.+++|+||+|+
T Consensus 151 ~~~~~~~Vkc~~kAkeG~LyfL~~~ilFgf~KP~l~i~~~dI~svs~Srv~~-----RTFdl~v~~k~g~e~eFsmIDq~ 225 (237)
T 3fss_A 151 EKINSFHLQCHRGTKEGTLYFLPDHIIFGFKKPILLLDASDIESITYSSITR-----LTFNASLVTKDGEKYEFSMIDQT 225 (237)
T ss_dssp -CCCCEEEEEESSSSEEEEEECSSEEEEESSSSCEEEEGGGEEEEEEESCCS-----SEEEEEEEETTSCEEEEEEEEGG
T ss_pred CCCCceEEEEEcCCCCeEEEEecCceEEecCCCeEEEEehhEEEEEEEeccC-----cEEEEEEEECCCCeEEEeecCHH
Confidence 124689999999999999999999999 79999999999999999999963 99999999999999999999999
Q ss_pred hhhhHHHHHhcC
Q 009802 306 EYHNLFDFISGK 317 (525)
Q Consensus 306 e~~~l~~~l~~k 317 (525)
||++|++||++|
T Consensus 226 E~~~Id~fvk~K 237 (237)
T 3fss_A 226 EYAKIDDYVKRK 237 (237)
T ss_dssp GHHHHHHHHHC-
T ss_pred HHHHHHHHHhcC
Confidence 999999999975
No 3
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.5e-21 Score=167.98 Aligned_cols=93 Identities=28% Similarity=0.562 Sum_probs=84.8
Q ss_pred ccccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCC
Q 009802 430 KKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 509 (525)
Q Consensus 430 kkkkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 509 (525)
+++++++||++||||+|||||||+++|..++.+||++++.+|+++||++|++|++++|++|.++|++++++|.++|+.|+
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 86 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYR 86 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 009802 510 NPKPMDIDSGNES 522 (525)
Q Consensus 510 ~~~~~~~~~~~~~ 522 (525)
.+.......+.+.
T Consensus 87 ~~~~~~~~~e~~~ 99 (102)
T 2co9_A 87 ASLVSKSYTDSGP 99 (102)
T ss_dssp HHHTSSCCCCCST
T ss_pred hhccccccccccc
Confidence 8877765554443
No 4
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.82 E-value=3.7e-21 Score=164.54 Aligned_cols=83 Identities=19% Similarity=0.476 Sum_probs=79.7
Q ss_pred ccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 432 QKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 432 kkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
+++++||++||||+|||||||+++|..++++||++++++|+++||++|++||+++|++|.++|++++++|..+|++|...
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 009802 512 KPM 514 (525)
Q Consensus 512 ~~~ 514 (525)
.+.
T Consensus 82 ~P~ 84 (99)
T 1k99_A 82 HPD 84 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 5
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.3e-21 Score=158.89 Aligned_cols=80 Identities=40% Similarity=0.689 Sum_probs=75.5
Q ss_pred ccccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCC--chhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhcc
Q 009802 430 KKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISG 507 (525)
Q Consensus 430 kkkkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~ 507 (525)
++++.++||++||||+|||||||+++|..++.+||+++ +++|+++||++|++||+++|++|.++|++++++|.++|+.
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999987 5999999999999999999999999999999999999999
Q ss_pred CC
Q 009802 508 YK 509 (525)
Q Consensus 508 y~ 509 (525)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 85
No 6
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.81 E-value=1.3e-20 Score=153.50 Aligned_cols=77 Identities=40% Similarity=0.780 Sum_probs=74.7
Q ss_pred cCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 435 KKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 435 kkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
++||++||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|.++|+.|+.+
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 77 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 77 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999864
No 7
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.81 E-value=1.5e-20 Score=155.39 Aligned_cols=79 Identities=42% Similarity=0.752 Sum_probs=75.5
Q ss_pred cCCCCCCcCCcceeEeeehHHHHHHHhhCCCCC--chhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCCC
Q 009802 435 KKDPNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPK 512 (525)
Q Consensus 435 kkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 512 (525)
++||++||||+|||||||+++|..++.+||+++ +++|+++||++|++||+++|++|.++|++++++|.++|+.|+...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 579999999999999999999999999999986 599999999999999999999999999999999999999999876
Q ss_pred C
Q 009802 513 P 513 (525)
Q Consensus 513 ~ 513 (525)
+
T Consensus 82 g 82 (83)
T 1aab_A 82 G 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.81 E-value=8e-21 Score=161.83 Aligned_cols=84 Identities=40% Similarity=0.788 Sum_probs=78.8
Q ss_pred ccccccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCC--chhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHh
Q 009802 428 KKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEI 505 (525)
Q Consensus 428 kkkkkkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~ 505 (525)
+++++++++||++||||+|||||||+++|..++.+||+++ +++|+++||++|++||+++|++|.++|++++++|.++|
T Consensus 10 k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 89 (97)
T 2lhj_A 10 VRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREK 89 (97)
T ss_dssp CCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009802 506 SGYKNP 511 (525)
Q Consensus 506 ~~y~~~ 511 (525)
+.|+.+
T Consensus 90 ~~y~~~ 95 (97)
T 2lhj_A 90 AEYAQR 95 (97)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999753
No 9
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.80 E-value=5.4e-21 Score=160.69 Aligned_cols=83 Identities=22% Similarity=0.458 Sum_probs=77.0
Q ss_pred cccccccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhc
Q 009802 427 GKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEIS 506 (525)
Q Consensus 427 ~kkkkkkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~ 506 (525)
.+++++++++||++||||+|||||||+++|..++.+||++++++|+++||++|++|++++|++|.++|++++++|.++|.
T Consensus 7 ~k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 7 GKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp CSSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCC
Q 009802 507 GYK 509 (525)
Q Consensus 507 ~y~ 509 (525)
.+.
T Consensus 87 ~~~ 89 (90)
T 1wgf_A 87 PSS 89 (90)
T ss_dssp SCC
T ss_pred Hhc
Confidence 753
No 10
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=5.4e-20 Score=153.58 Aligned_cols=77 Identities=31% Similarity=0.461 Sum_probs=74.8
Q ss_pred cccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCC
Q 009802 433 KKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 509 (525)
Q Consensus 433 kkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 509 (525)
++++++++||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|.+++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999997
No 11
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.79 E-value=3.7e-21 Score=162.66 Aligned_cols=84 Identities=50% Similarity=0.926 Sum_probs=78.9
Q ss_pred cccccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccC
Q 009802 429 KKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGY 508 (525)
Q Consensus 429 kkkkkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y 508 (525)
++++++++|+++||||+|||+|||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|..+|+.|
T Consensus 9 ~~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 9 KRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 009802 509 KNPK 512 (525)
Q Consensus 509 ~~~~ 512 (525)
+.++
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 7653
No 12
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.9e-20 Score=154.92 Aligned_cols=81 Identities=27% Similarity=0.387 Sum_probs=77.3
Q ss_pred cCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCCCCC
Q 009802 435 KKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPM 514 (525)
Q Consensus 435 kkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 514 (525)
..++++||||+|||||||+++|..++++||++++.+|+++||++|++|++++|++|.++|++++++|.++|+.|+.+...
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 009802 515 D 515 (525)
Q Consensus 515 ~ 515 (525)
.
T Consensus 82 ~ 82 (92)
T 2cs1_A 82 M 82 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.78 E-value=9.6e-20 Score=147.99 Aligned_cols=75 Identities=24% Similarity=0.463 Sum_probs=71.2
Q ss_pred CCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 437 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 437 d~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
||++||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|.++|++|+-+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 75 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999753
No 14
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.78 E-value=7.5e-20 Score=154.31 Aligned_cols=78 Identities=26% Similarity=0.646 Sum_probs=75.2
Q ss_pred cCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCCC
Q 009802 435 KKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPK 512 (525)
Q Consensus 435 kkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 512 (525)
.+||++||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|.++|+.|+...
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 79 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSE 79 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999998753
No 15
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.77 E-value=7.5e-20 Score=147.61 Aligned_cols=72 Identities=32% Similarity=0.637 Sum_probs=69.3
Q ss_pred CCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 438 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 438 ~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
.++||||+|||||||+++|+.++.+||++++++|+++||++|++|++ |++|.++|++++++|+++|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999999999999997 9999999999999999999999865
No 16
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.77 E-value=2.3e-19 Score=143.79 Aligned_cols=69 Identities=39% Similarity=0.709 Sum_probs=67.1
Q ss_pred CCcCCcceeEeeehHHHHHHHhhCCCCCc--hhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccC
Q 009802 440 APKRAMSGFIFFSQMERENIKKSNPGIAF--TDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGY 508 (525)
Q Consensus 440 ~PKrP~sAy~lF~~e~R~~~k~~~P~~~~--~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y 508 (525)
+||||+|||+|||+++|+.++.+||+++. ++|+++||++|++||+++|++|.++|++++++|.++|++|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999976 9999999999999999999999999999999999999988
No 17
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.9e-19 Score=145.24 Aligned_cols=72 Identities=39% Similarity=0.767 Sum_probs=69.9
Q ss_pred CCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 438 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 438 ~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
|++||||+|||||||+++|..++.+||++++++|+++||++|++| ++|++|+++|++++++|.++|+.|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 689999999999999999999999999999999999999999999 889999999999999999999999875
No 18
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.76 E-value=2.5e-19 Score=147.80 Aligned_cols=77 Identities=18% Similarity=0.493 Sum_probs=74.1
Q ss_pred CCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCCC
Q 009802 436 KDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPK 512 (525)
Q Consensus 436 kd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 512 (525)
.++++||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|.++|++|+..-
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999998753
No 19
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.75 E-value=5.3e-19 Score=147.74 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=72.3
Q ss_pred CCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCCCCC
Q 009802 439 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPM 514 (525)
Q Consensus 439 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 514 (525)
++||||+|||+||+++.|..++.++|+ ++++|+|+||++|++|++++|++|+++|++++++|+++|+.|+.+...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 689999999999999999999999999 999999999999999999999999999999999999999999987655
No 20
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.75 E-value=8.4e-19 Score=145.66 Aligned_cols=75 Identities=24% Similarity=0.473 Sum_probs=72.6
Q ss_pred CCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCCC
Q 009802 438 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPK 512 (525)
Q Consensus 438 ~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 512 (525)
|++||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|..+|++|+..-
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998654
No 21
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.74 E-value=3.8e-19 Score=142.34 Aligned_cols=71 Identities=23% Similarity=0.579 Sum_probs=63.7
Q ss_pred CCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCC
Q 009802 439 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 509 (525)
Q Consensus 439 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 509 (525)
++||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|.++|++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999995
No 22
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=151.25 Aligned_cols=80 Identities=21% Similarity=0.457 Sum_probs=71.0
Q ss_pred ccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 432 QKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 432 kkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
....+++++||||+|||||||+++|+.++.++|++++++|+++||++|++||+++|++|.++|++++++|.++|+.|+-.
T Consensus 21 ~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 21 FQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp -------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred hhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999764
No 23
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.73 E-value=1.4e-18 Score=142.57 Aligned_cols=74 Identities=26% Similarity=0.501 Sum_probs=71.2
Q ss_pred CCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCCC
Q 009802 439 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPK 512 (525)
Q Consensus 439 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 512 (525)
++||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|..+|++|+..-
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999998654
No 24
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.73 E-value=1.3e-18 Score=143.75 Aligned_cols=75 Identities=21% Similarity=0.513 Sum_probs=69.5
Q ss_pred CCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 437 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 437 d~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
.+++||||+|||||||+++|..++.+||++++++|+++||++|++|++++|++|.++|++++++|.++|++|+-.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 77 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYR 77 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999754
No 25
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.72 E-value=1.6e-18 Score=160.41 Aligned_cols=81 Identities=41% Similarity=0.774 Sum_probs=76.8
Q ss_pred cccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCC
Q 009802 431 KQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKN 510 (525)
Q Consensus 431 kkkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 510 (525)
++++.++|++||||+|||+|||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|.++|++|++
T Consensus 79 ~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 009802 511 P 511 (525)
Q Consensus 511 ~ 511 (525)
+
T Consensus 159 ~ 159 (159)
T 2gzk_A 159 K 159 (159)
T ss_dssp C
T ss_pred C
Confidence 3
No 26
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.72 E-value=2.1e-18 Score=141.05 Aligned_cols=73 Identities=26% Similarity=0.524 Sum_probs=70.5
Q ss_pred CCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 439 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 439 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
+.||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|.+++++|+-.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~ 73 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYR 73 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999854
No 27
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.72 E-value=3e-18 Score=142.55 Aligned_cols=73 Identities=21% Similarity=0.398 Sum_probs=70.4
Q ss_pred CCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 439 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 439 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
..||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|+.++++|..+|+.|+..
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSAR 73 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999844
No 28
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.72 E-value=2.3e-18 Score=141.63 Aligned_cols=74 Identities=27% Similarity=0.524 Sum_probs=69.0
Q ss_pred CCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 438 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 438 ~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
++.||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|.+++++|+-.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999754
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.71 E-value=2.2e-18 Score=136.63 Aligned_cols=66 Identities=27% Similarity=0.537 Sum_probs=63.4
Q ss_pred CCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccC
Q 009802 439 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGY 508 (525)
Q Consensus 439 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y 508 (525)
++||||+|||+|||+++|..++..|| ++|++.||++|++||+++|++|.++|++++++|+++|++|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999998876 6999999999999999999999999999999999999998
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=2e-18 Score=149.85 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=73.2
Q ss_pred cccccCCCCCC-cCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCC
Q 009802 431 KQKKKKDPNAP-KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 509 (525)
Q Consensus 431 kkkkkkd~~~P-KrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 509 (525)
+.++.+++++| |||+|||+|||+++|..++ ++++++|+++||++|++|++++|++|.++|++++++|.++|+.|.
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999 9999999999999999987 789999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 009802 510 NPKP 513 (525)
Q Consensus 510 ~~~~ 513 (525)
.+..
T Consensus 83 ~~~~ 86 (108)
T 1v64_A 83 ESLP 86 (108)
T ss_dssp HHSC
T ss_pred hhCC
Confidence 7553
No 31
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.2e-18 Score=157.45 Aligned_cols=80 Identities=41% Similarity=0.783 Sum_probs=76.5
Q ss_pred ccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 432 QKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 432 kkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
+++.++|++||||+|||||||+++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|.++|+.|+.+
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999875
No 32
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-17 Score=154.93 Aligned_cols=84 Identities=39% Similarity=0.692 Sum_probs=78.3
Q ss_pred ccccccCCCCCCcCCcceeEeeehHHHHHHHhhCCC--CCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhcc
Q 009802 430 KKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPG--IAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISG 507 (525)
Q Consensus 430 kkkkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~--~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~ 507 (525)
++++.++||++||||+|||+|||+++|..++.+||+ +++++|+++||++|++||+++|++|.++|++++++|.++|+.
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344667899999999999999999999999999999 689999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 009802 508 YKNPKP 513 (525)
Q Consensus 508 y~~~~~ 513 (525)
|....+
T Consensus 85 y~~~~~ 90 (173)
T 2yrq_A 85 YIPPKG 90 (173)
T ss_dssp CCCCCC
T ss_pred hhhhhh
Confidence 987544
No 33
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.65 E-value=2.4e-17 Score=141.36 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=69.1
Q ss_pred CCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCCCCCC
Q 009802 436 KDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMD 515 (525)
Q Consensus 436 kd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~~ 515 (525)
....+||||+|||||||++++. ..++|++++++|+++||++|++|++++|++|+++|++++++|.++|+.|..+....
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 3456899999999999999975 34556688999999999999999999999999999999999999999998876543
No 34
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.8e-17 Score=135.28 Aligned_cols=63 Identities=25% Similarity=0.415 Sum_probs=60.2
Q ss_pred CCCCCCcCCcceeEeeehHHHHHHHhhCCCCC-chhhhhHHHhhhccCChhhhhhhHHHHHHHH
Q 009802 436 KDPNAPKRAMSGFIFFSQMERENIKKSNPGIA-FTDVGRVLGERWKKMSVEEREPYESKARADK 498 (525)
Q Consensus 436 kd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k 498 (525)
+++++||||+|||||||+++|..|+.+||+++ +++|+++||++|++|++++|++|+++|+.+.
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999998 9999999999999999999999999999884
No 35
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-17 Score=135.47 Aligned_cols=75 Identities=17% Similarity=0.328 Sum_probs=69.4
Q ss_pred cCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHH---HhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 435 KKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVL---GERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 435 kkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~l---ge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
...+++||||+|||||||+++|++++.+ ++++++|+++| |++|++|++++|++|+++|++++++|.+++..=.++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~~~~~~ 82 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPGPSEKQ 82 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 4567899999999999999999999988 89999999999 999999999999999999999999999998655443
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-17 Score=139.79 Aligned_cols=71 Identities=23% Similarity=0.400 Sum_probs=66.3
Q ss_pred cccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCC--chhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHh
Q 009802 431 KQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEI 505 (525)
Q Consensus 431 kkkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~ 505 (525)
..++++||++||||+|||||||+++|.+|+.+||+++ +++|+ ++|++|++++|++|+++|++++++|+..-
T Consensus 13 ~~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~~ 85 (90)
T 2yuk_A 13 TLKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRINK 85 (90)
T ss_dssp HHHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HhhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455679999999999999999999999999999999 99998 99999999999999999999999998754
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.7e-16 Score=156.31 Aligned_cols=79 Identities=27% Similarity=0.484 Sum_probs=75.0
Q ss_pred ccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCCC
Q 009802 434 KKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPK 512 (525)
Q Consensus 434 kkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 512 (525)
..++|++||||+|||+|||+++|..++++||++++++|+++||++|+.|++++|++|+++|++++++|+++|+.|...+
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999997544
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.55 E-value=4.9e-16 Score=150.62 Aligned_cols=76 Identities=28% Similarity=0.510 Sum_probs=72.4
Q ss_pred CCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCCC
Q 009802 437 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPK 512 (525)
Q Consensus 437 d~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 512 (525)
.|++||||+|||+|||+++|..++++||++++++|+++||++|++||+++|++|+++|++++++|..+|+.|...+
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 81 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccC
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999997544
No 39
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.52 E-value=3.4e-16 Score=151.70 Aligned_cols=77 Identities=25% Similarity=0.448 Sum_probs=70.7
Q ss_pred ccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 432 QKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 432 kkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
++..+++++||||+|||+|||+++|..++..+|+ +|+++||++|++||+++|++|.++|++++++|.++|++|+.+
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446789999999999999999999999877665 899999999999999999999999999999999999999765
Q ss_pred C
Q 009802 512 K 512 (525)
Q Consensus 512 ~ 512 (525)
.
T Consensus 182 ~ 182 (214)
T 3tq6_A 182 M 182 (214)
T ss_dssp H
T ss_pred C
Confidence 4
No 40
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.51 E-value=4.4e-16 Score=153.31 Aligned_cols=77 Identities=25% Similarity=0.448 Sum_probs=70.9
Q ss_pred ccccCCCCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 432 QKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 432 kkkkkd~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
++..+++++||||+|||+|||+++|..++.+||+ +|+++||++|++|++++|++|+++|++++++|+++|++|+.+
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999877765 899999999999999999999999999999999999999775
Q ss_pred C
Q 009802 512 K 512 (525)
Q Consensus 512 ~ 512 (525)
.
T Consensus 214 ~ 214 (238)
T 3tmm_A 214 M 214 (238)
T ss_dssp H
T ss_pred C
Confidence 3
No 41
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.48 E-value=2.1e-14 Score=132.58 Aligned_cols=74 Identities=24% Similarity=0.482 Sum_probs=71.4
Q ss_pred CCCCcCCcceeEeeehHHHHHHHhhCCCCCchhhhhHHHhhhccCChhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 009802 438 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 511 (525)
Q Consensus 438 ~~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~eisk~lge~Wk~Ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 511 (525)
+++||||++|||+|+.++|..++.+||++++++|+++||++|++||+++|++|.++|+.++++|..+|+.|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999764
No 42
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.013 Score=54.94 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=66.8
Q ss_pred CcceEEEecCcceeeccC-----------CCeEEecCceeEEEEEEecCCCCceeeEeEEEEEeCCceEEEeccchhhhh
Q 009802 240 AEDGVLYPLEKSFFFLPK-----------PPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYH 308 (525)
Q Consensus 240 a~~G~Lypl~~~llfl~K-----------Pp~~i~~~eI~~V~feRv~~~~~~~rtFDl~i~~K~~~~~~Fs~I~~~e~~ 308 (525)
...|.|=..+.+|.|=.. -++.|+-+||..|...|+. |.|-|.|.+|++..++|.....++++
T Consensus 35 ~~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~------rg~~LrI~~K~g~~~~fdGF~~~D~~ 108 (191)
T 3f5r_A 35 KFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGC------RGYDLKINTKNQGVIQLDGFSQDDYN 108 (191)
T ss_dssp SSCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECS------SSEEEEEEESSSCEEEEEEECGGGHH
T ss_pred CcccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEcc------CCcEEEEEECCCceEEecCCCHHHHH
Confidence 356777777777777432 6688999999999999975 88999999999999999999999999
Q ss_pred hHHHHHhcC-CceEeec
Q 009802 309 NLFDFISGK-GLKIMNL 324 (525)
Q Consensus 309 ~l~~~l~~k-~i~~~~~ 324 (525)
.|..||+.. +|.+.+.
T Consensus 109 ~L~~~fk~~f~i~Le~k 125 (191)
T 3f5r_A 109 LIKNDFHRRFNIQVEQR 125 (191)
T ss_dssp HHHHHHHHHHCCCCEEC
T ss_pred HHHHHHHHHcCCCceee
Confidence 999999987 6666543
No 43
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=58.40 E-value=51 Score=28.05 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=54.7
Q ss_pred eEEEeecCcceEEEecCc----ceeeccC--CC-eEEecCceeEEEEEEecCCCCceeeEeEEEEEeC--------C---
Q 009802 233 AVKSSLKAEDGVLYPLEK----SFFFLPK--PP-TLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKT--------E--- 294 (525)
Q Consensus 233 ~v~c~~ka~~G~Lypl~~----~llfl~K--Pp-~~i~~~eI~~V~feRv~~~~~~~rtFDl~i~~K~--------~--- 294 (525)
.-.|+||..+|.|.-.++ .|.|.+- ++ +-|+++.|....=+..+. ---=|.|+.|. +
T Consensus 4 sgaa~yKKk~G~lti~eD~~p~~l~W~p~~g~~~isI~l~~It~LQqTp~ts-----~KvmLKI~~k~~~~~~~~~~~~~ 78 (115)
T 1y5o_A 4 SGAAIFEKVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASS-----EKMMLRLIGKVDESKKRKDNEGN 78 (115)
T ss_dssp EEEEESSSCEEEEEEECSSSSCEEEEEESSSSCEEEEESTTCSEEEECCTTC-----SSEEEEEEECSCCSSSCCCCSSC
T ss_pred cceeEEEecccEEEEccCCCcceEEEEECCCCccEEEEhhhhhhhhcCCCCC-----CceEEEEEEeccccccccCCCcC
Confidence 357999999999999999 7888542 33 559999998754443221 33446666663 2
Q ss_pred --------ceEEEeccchhhhhhHHHHHhc
Q 009802 295 --------QEHLFRNIQRNEYHNLFDFISG 316 (525)
Q Consensus 295 --------~~~~Fs~I~~~e~~~l~~~l~~ 316 (525)
-.++|++ |.+.++|++.|..
T Consensus 79 ~~~~~p~~~~F~Ftn--R~~~d~IKd~Lq~ 106 (115)
T 1y5o_A 79 EVVPKPQRHMFSFNN--RTVMDNIKMTLQQ 106 (115)
T ss_dssp CSSCCCEEEEEEESC--HHHHHHHHHHHHH
T ss_pred CCCCCcceEEEEeCC--HHHHHHHHHHHHH
Confidence 1456777 9999999999875
No 44
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=46.10 E-value=17 Score=34.14 Aligned_cols=48 Identities=15% Similarity=0.423 Sum_probs=39.5
Q ss_pred CCCCchhhhhH-HHhhhccCChhhhhhhHHHHHH-HHHHHHHHhccCCCC
Q 009802 464 PGIAFTDVGRV-LGERWKKMSVEEREPYESKARA-DKKRYKDEISGYKNP 511 (525)
Q Consensus 464 P~~~~~eisk~-lge~Wk~Ls~~eK~~y~~~A~~-~k~~y~~e~~~y~~~ 511 (525)
|-.++..+++. ||..|+.+|+++|+.|.+.-.. ....|-..+..|...
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 56677777765 5899999999999999987666 557799999999865
No 45
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=45.58 E-value=1.1e+02 Score=26.37 Aligned_cols=80 Identities=6% Similarity=0.038 Sum_probs=50.4
Q ss_pred eEEEeecCcceEEEecCcceeeccCC-------Ce-EEecCceeEEEEEEecCCCCceeeEeEEEEEeCCc-eEEEeccc
Q 009802 233 AVKSSLKAEDGVLYPLEKSFFFLPKP-------PT-LILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQ 303 (525)
Q Consensus 233 ~v~c~~ka~~G~Lypl~~~llfl~KP-------p~-~i~~~eI~~V~feRv~~~~~~~rtFDl~i~~K~~~-~~~Fs~I~ 303 (525)
.|.+.++.....+.+|++.||++-+. -+ -||+..|..+++|-.|. .- ....|.|.+.++. ++.|.=--
T Consensus 33 ~I~~ayk~iRD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~--fD-lDaElki~isg~~~pi~~~f~k 109 (126)
T 3hsa_A 33 ELQLAYXMVRDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGT--FD-MDAELXLWISGQHEPLVXELXR 109 (126)
T ss_dssp CEEEEEECSSEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEEST--TS-CEEEEEEEETTCSSCEEEEECT
T ss_pred EEEEEehhcCceEEEccchheEEecCcCcccceEEEEeccceeeEEEEecccc--cc-CCceEEEEEcCCceEEEEeccC
Confidence 46677888889999999999997643 23 39999999999997542 00 2233666665532 24443223
Q ss_pred hhhhhhHHHHHh
Q 009802 304 RNEYHNLFDFIS 315 (525)
Q Consensus 304 ~~e~~~l~~~l~ 315 (525)
..+...|...|.
T Consensus 110 ~~di~~i~k~La 121 (126)
T 3hsa_A 110 GTDVVGIQXTIA 121 (126)
T ss_dssp TSCHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 334444444443
No 46
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=44.82 E-value=53 Score=27.65 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=52.0
Q ss_pred EeecCcceEEEecCcceeecc--CCC--eEEecCceeEEEEEEecCCCCceeeEeEEEEEeCCc--eEEEecc--chhhh
Q 009802 236 SSLKAEDGVLYPLEKSFFFLP--KPP--TLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ--EHLFRNI--QRNEY 307 (525)
Q Consensus 236 c~~ka~~G~Lypl~~~llfl~--KPp--~~i~~~eI~~V~feRv~~~~~~~rtFDl~i~~K~~~--~~~Fs~I--~~~e~ 307 (525)
..||..+|.||.....+.|.+ +++ +-+.+++|.. .|+...+. ----|-|+++++. .++|++= .+.|.
T Consensus 15 v~yKK~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~---qq~SP~~k--~KVqLqi~l~~~~~~~F~Ftn~~~a~~er 89 (108)
T 1pfj_A 15 VRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKC---QKISPEGK--AKIQLQLVLHAGDTTNFHFSNESTAVKER 89 (108)
T ss_dssp CBCSSCBCEEEEETTEEEEECSSSSSCSEEEETTTCCC---EEECCSSS--SSCEEEEECSSSCEEEEECCCSSCTTHHH
T ss_pred heeecCCceEEEEcceEEEccCCCCCceEEEehhhhhc---ceeCCCCC--ccEEEEEEEeCCCceEEEEcCcHHHHHHH
Confidence 467889999999999999966 333 3357999886 34443331 2345788888764 4556663 36788
Q ss_pred hhHHHHHhc
Q 009802 308 HNLFDFISG 316 (525)
Q Consensus 308 ~~l~~~l~~ 316 (525)
+.|++-|..
T Consensus 90 d~VKd~L~~ 98 (108)
T 1pfj_A 90 DAVKDLLQQ 98 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887754
No 47
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=43.35 E-value=6.6 Score=39.44 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=10.7
Q ss_pred cchhhhhhHHHHH-hc-CCceEeec
Q 009802 302 IQRNEYHNLFDFI-SG-KGLKIMNL 324 (525)
Q Consensus 302 I~~~e~~~l~~~l-~~-k~i~~~~~ 324 (525)
|...-...|-.++ .. ..|+..+.
T Consensus 286 i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 286 IELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEc
Confidence 3333344455555 32 45555543
No 48
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase, structural genomi consortium, SGC; 2.08A {Homo sapiens}
Probab=42.38 E-value=1e+02 Score=27.08 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=46.6
Q ss_pred CCCeEEecC-ceeEEEEEEecCCCCceeeEeEEEEEeCCceEEEeccchhhhhhHHHHHhcC
Q 009802 257 KPPTLILHE-EIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGK 317 (525)
Q Consensus 257 KPp~~i~~~-eI~~V~feRv~~~~~~~rtFDl~i~~K~~~~~~Fs~I~~~e~~~l~~~l~~k 317 (525)
|.|..+.|+ .|.+|.|...+. +---|-+++||...+-+.-++..+.+.|+.||+.-
T Consensus 62 ~~~ktFQL~nNIksVvlr~~g~-----~qn~LhLTlknn~fLfIdKLs~~DaeqLK~FLd~v 118 (141)
T 3u12_A 62 GIPRIFQLSHNIKNVVLRPSGA-----KQSRLMLTLQDNSFLSIDKVPSKDAEEMRLFLDAV 118 (141)
T ss_dssp SCCEEEECTTTEEEEEEEECST-----TEEEEEEEETTCCEEEEEEEEHHHHHHHHHHHHHH
T ss_pred CccEEEEcccceeeEEEecCCC-----ccceEEEEEecCcEEEEecCCHHHHHHHHHHHHHh
Confidence 565555665 699999988765 44458999999999999999999999999999874
No 49
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=35.40 E-value=9.9 Score=38.09 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=3.2
Q ss_pred hHHHHHh
Q 009802 309 NLFDFIS 315 (525)
Q Consensus 309 ~l~~~l~ 315 (525)
.|-.+|.
T Consensus 263 ~l~~~l~ 269 (386)
T 2ca6_A 263 AVVDAFS 269 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3445553
No 50
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=27.57 E-value=3.7e+02 Score=24.81 Aligned_cols=92 Identities=13% Similarity=0.215 Sum_probs=55.9
Q ss_pred eeccCCCcccCCC--------cceEEEeecCcceEEEecCcceeecc------CCCeE--EecC--ceeEEEEEEecCCC
Q 009802 218 KITKPGKFRSAQD--------GYAVKSSLKAEDGVLYPLEKSFFFLP------KPPTL--ILHE--EIDYVEFERHAAGG 279 (525)
Q Consensus 218 ki~~P~~F~s~~~--------~~~v~c~~ka~~G~Lypl~~~llfl~------KPp~~--i~~~--eI~~V~feRv~~~~ 279 (525)
+|+.|..|..... .--|.+.++...-.+.++++.||++- |-..| ||+. -|..|+++-.| +
T Consensus 6 ~ii~p~D~dk~di~~~Ll~EdgE~I~~ayk~irD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAG--t 83 (193)
T 3b77_A 6 QVIHPDDFDKAAADDYVLHEDGEKIYFLIKSKTDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAG--T 83 (193)
T ss_dssp EECCGGGSTTSGGGGGSCGGGTCCEEEEEECSSEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCC--S
T ss_pred cccChhhCChhhhhhhccCCCCCEEeeeeeecceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecc--e
Confidence 4555776665432 22477888888889999999999965 33333 9999 99999999533 2
Q ss_pred CceeeEeEEEEEeCCceEEEeccch---hhhhhHHHHH
Q 009802 280 SNMHYFDLLIRLKTEQEHLFRNIQR---NEYHNLFDFI 314 (525)
Q Consensus 280 ~~~rtFDl~i~~K~~~~~~Fs~I~~---~e~~~l~~~l 314 (525)
.- ..-.|.|.+. +..+.| .+++ ++...|...|
T Consensus 84 fD-lDaElki~i~-~~~~~I-ef~K~~~~di~~lyk~L 118 (193)
T 3b77_A 84 VD-LDVEIKFEIG-GKHYSI-DVDKKQLEHVKDLYKAL 118 (193)
T ss_dssp SC-CEEEEEEEET-TEEEEE-EEEGGGHHHHHHHHHHH
T ss_pred ec-cCccEEEEEc-CceEEE-EeCCcchhhHHHHHHHH
Confidence 11 2333344443 344444 4444 3444444444
No 51
>2y6t_E Ecotin, chymotrypsinogen A; hydrolase-inhibitor complex; 2.74A {Yersinia pseudotuberculosis}
Probab=24.40 E-value=2.8e+02 Score=24.56 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=25.7
Q ss_pred EEEEEec-CCcccCCCcccceEEEEEEecceeeeec
Q 009802 146 TFVVVTL-DPPIRKGQTLYPHIVLQFETDYVVQSEL 180 (525)
Q Consensus 146 ~~~v~~L-~~Pi~~Gqt~y~~lv~~f~~~~~~~~~l 180 (525)
.++.++| ++++.--..|+| ||++.+.+-++...+
T Consensus 101 ~FV~~~lg~~~~irYnSrlP-iVVY~P~~~evrYRi 135 (148)
T 2y6t_E 101 KFVTANLGDAAMQRYNSRLP-IVVYVPQGVEVKYRI 135 (148)
T ss_dssp EEEEEECTTTTEEECCTTSC-EEEEEETTCEEEEEE
T ss_pred EEEEecCCCcceEecCCCCC-EEEEcCCCcEEEEEE
Confidence 5677776 666766778888 999999987776554
No 52
>1j8r_A PAPG adhesin, pyelonephritic adhesin; PAG adhesin, GBO4, structural genomics, PSI, protein structure initiative; HET: NGA GLA GAL BGC; 1.80A {Escherichia coli} SCOP: b.2.3.3 PDB: 1j8s_A
Probab=24.20 E-value=15 Score=33.18 Aligned_cols=39 Identities=33% Similarity=0.471 Sum_probs=26.3
Q ss_pred eccCcceeEEEe-cCcEEEEccc---eeeeeecCceeEEEecccCC
Q 009802 101 LTPRGRYSVELH-LSFLRLQGQA---NDFKIQYSSVVRLFLLPKSN 142 (525)
Q Consensus 101 ~~PRgry~le~~-~~~lrl~gkt---~d~~I~y~~I~~~f~lP~~~ 142 (525)
-.|.|+|++-+- -.||+=|--. ..|||||+.||| ||..+
T Consensus 143 DLPkG~Y~~pv~yirGiQ~h~yd~~~~~yKmpy~~~K~---lP~~n 185 (196)
T 1j8r_A 143 DLPLGDYSVKIPYTSGMQRHFASYLGARFKIPYNVAKT---LPREN 185 (196)
T ss_dssp TCCSEEEEEEEEEEEEEEEEEESSTTCCCCCCHHHHTT---SCCCE
T ss_pred cCCCCccccccchhhccchhhhhhhhhhccCcHHHHhc---CCCCC
Confidence 358999999873 3344444322 239999999998 46654
No 53
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=23.24 E-value=2.2e+02 Score=30.33 Aligned_cols=73 Identities=26% Similarity=0.384 Sum_probs=50.9
Q ss_pred ecCcceEEEecCcceeecc--CCCeEEecCceeEEEEEEecCCCCceeeEeEEEEEeCCceEEEeccchh-hhhhHHHHH
Q 009802 238 LKAEDGVLYPLEKSFFFLP--KPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRN-EYHNLFDFI 314 (525)
Q Consensus 238 ~ka~~G~Lypl~~~llfl~--KPp~~i~~~eI~~V~feRv~~~~~~~rtFDl~i~~K~~~~~~Fs~I~~~-e~~~l~~~l 314 (525)
.++..|.||-+.--|+|.. +..++|++.-|.+|+ ++...+ +..-|.|..||-..++|. ++.+ +...|.+-|
T Consensus 22 ~~~~~GtL~lTn~~LiF~~~~~~e~wi~~~~I~~Ve--K~~~~~---~~~~l~I~CKDfr~~~f~-f~~~~~~~~v~~sL 95 (512)
T 2yf0_A 22 NKSLTGTLYLTATHLLFIDSHQKETWILHHHIASVE--KLALTT---SGCPLVIQCKNFRTVHFI-VPRERDCHDIYNSL 95 (512)
T ss_dssp --CCEEEEEECSSEEEEEESSSCEEEEEGGGEEEEE--ECCCBT---TBEEEEEEETTSCEEEEE-ESCHHHHHHHHHHH
T ss_pred CCceeEEEEEECCEEEEeCCCCCceEecccceeEEE--EecCCC---CCceEEEEecCCcEEEEE-eCChHHHHHHHHHH
Confidence 4577899999999999976 345789999999985 544322 446799999998888886 4443 334455555
Q ss_pred hc
Q 009802 315 SG 316 (525)
Q Consensus 315 ~~ 316 (525)
..
T Consensus 96 ~~ 97 (512)
T 2yf0_A 96 LQ 97 (512)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 54
>3sam_A 62 kDa protein, rifampicin resistance protein; double-barrel, jelly-roll, scaffolding protein, structural P rifampicin-resistance protein; 2.55A {Vaccinia virus} PDB: 3saq_A 2ygc_A* 2ygb_A
Probab=22.74 E-value=1.6e+02 Score=31.09 Aligned_cols=98 Identities=16% Similarity=0.263 Sum_probs=70.2
Q ss_pred ee-EEEEechhhhccccCccceEEEEEecCCCCCCCCCCceEEEEEEecCCC----Cc---cCC--CCCCChHHHHHHHH
Q 009802 9 KQ-AFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSN----TQ---FVG--DENHPPAQVFRDKI 78 (525)
Q Consensus 9 k~-~feip~~~i~~~~~~~knev~~ef~~~~~~~~~~~~~l~e~rf~~p~~~----~~---~~~--~~~~~~~~~~~~~i 78 (525)
|+ -+|+|=.-|.|+|. ++-++=+||- .+.+.+|+-+.- .+ +.| ..|.+.+++|.++|
T Consensus 250 K~~yiE~~rr~v~q~N~--~t~~i~dv~s-----------~TslsvY~Kp~yg~~~NkFIsYPgy~qtE~dyI~afVerL 316 (576)
T 3sam_A 250 KPSFIEKPRRVIGQINQ--PTATVTEVHA-----------ATSLSVYTKPYYGNTDNKFISYPGYSQDEKDYIDAYVSRL 316 (576)
T ss_dssp CCEEEEEEEEEECCTTC--SEEEEECCSE-----------EEEEEEEEEEECTTSCCEESCCCTTCCSHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhcccCc--ccccccccee-----------eeEEEEEEecccccCCCeeEcCCCCCcCHHHHHHHHHHHH
Confidence 44 45888888888886 5666666652 667777765411 10 111 13457889999999
Q ss_pred Hh---------------hcccCcCCcceEEEEcCceee-----ccCcceeEEEecCcEEEEc
Q 009802 79 MS---------------MADVGAGGEEAVVTFEGIAIL-----TPRGRYSVELHLSFLRLQG 120 (525)
Q Consensus 79 ~~---------------~a~~~~~~g~~i~~~~~i~~~-----~PRgry~le~~~~~lrl~g 120 (525)
|+ +|.+..+.-..+++|+|+.|. +|-|. +|=.|.|=|-|.-
T Consensus 317 L~DLviVs~~~p~~Fp~~a~~vevp~~g~V~iqDvdv~V~IdnVP~~~-~vYyHtNiLvF~t 377 (576)
T 3sam_A 317 LDDLVIVSDGPPTGYPESAEIVEVPEDGIVSIQDADVYVKIDNVPDNM-SVYLHTNLLMFGT 377 (576)
T ss_dssp HHHHEEEESSSCCSSCTTCCEEECCTTCEEEETTEEEEEEEESCCTTC-EEEEETTSBEECS
T ss_pred HhhEEEecCCCCCCCCccceEEEcCCCCeEEEeeeeEEEEecCcCCCc-eEEEEeeeEEEEe
Confidence 97 788888888889999999886 58776 8889999887754
No 55
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=22.48 E-value=84 Score=27.67 Aligned_cols=39 Identities=8% Similarity=0.307 Sum_probs=32.0
Q ss_pred cCcceEEEecCcceeeccCC-----CeEEecCceeEEEEEEecC
Q 009802 239 KAEDGVLYPLEKSFFFLPKP-----PTLILHEEIDYVEFERHAA 277 (525)
Q Consensus 239 ka~~G~Lypl~~~llfl~KP-----p~~i~~~eI~~V~feRv~~ 277 (525)
+...|.||-|+.=+||+.+. .+-++|..|..++++--.+
T Consensus 49 ~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~f 92 (145)
T 2cay_A 49 QRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFL 92 (145)
T ss_dssp TCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSS
T ss_pred CCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCcc
Confidence 56789999999999998752 3679999999999975433
Done!